Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000160620	ENSGT00940000158959.b #7	ENSGT00940000162285 #8	ENSGT01030000234883 #9	ENSGT00940000156018.A #11	ENSGT00940000162806 #12	ENSGT00610000086173 #13	ENSGT00390000015368.a.a #14	ENSGT00940000161872	ENSGT00390000004001 #16	ENSGT00950000183049.C #17	ENSGT00390000018395 #18	ENSGT00940000155914 #19	ENSGT00940000156705 #20	ENSGT00530000064192 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Equus	ANCESTRAL SPECIES	23	ENSGT00940000160620	ENSGT00940000158959.b #7	ENSGT00940000162285 #8	ENSGT01030000234883 #9	ENSGT00940000156018.A #11	ENSGT00940000162806 #12	ENSGT00610000086173 #13	ENSGT00390000015368.a.a #14	ENSGT00940000161872	ENSGT00390000004001 #16	ENSGT00950000183049.C #17	ENSGT00390000018395 #18	ENSGT00940000155914 #19	ENSGT00940000156705 #20	ENSGT00530000064192 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Donkey	MODERN SPECIES		RAB3A (ENSEASG00005006221) #7	PDE4C (ENSEASG00005006231) #8	ENSEASG00005028857 #9	ENSEASG00005038750 #10	ENSEASG00005006233 #11	JUND (ENSEASG00005006235) #12	ENSEASG00005030773 #13	PGPEP1 (ENSEASG00005006237) #14	ENSEASG00005032985 #15	LRRC25 (ENSEASG00005006241) #16	SSBP4 (ENSEASG00005006244) #17	ISYNA1 (ENSEASG00005006248) #18	ELL (ENSEASG00005006252) #19	FKBP8 (ENSEASG00005006254) #20	KXD1 (ENSEASG00005031599) #21	UBA52 (ENSEASG00005033556) #22	ENSEASG00005025213 #23	CRLF1 (ENSEASG00005006270) #24	TMEM59L (ENSEASG00005006274) #25	KLHL26 (ENSEASG00005006276) #26	CRTC1 (ENSEASG00005006280) #27	COMP (ENSEASG00005006320) #28	UPF1 (ENSEASG00005006549) #29	GDF1 (ENSEASG00005029430) #30	CERS1 (ENSEASG00005030456) #31	COPE (ENSEASG00005006557) #32	DDX49 (ENSEASG00005006560) #33	HOMER3 (ENSEASG00005006562) #34	SUGP2 (ENSEASG00005006565) #35	ARMC6 (ENSEASG00005006568) #36	SLC25A42 (ENSEASG00005006570) #37
Chiroptera	ANCESTRAL SPECIES	44	ENSGT00940000160620	ENSGT00940000158959.b #7	ENSGT00940000162285 #8	ENSGT01030000234883 #9	ENSGT00940000156018.A #11	ENSGT00940000162806 #12	ENSGT00610000086173 #13	ENSGT00390000015368.a.a #14	ENSGT00940000161872	ENSGT00390000004001 #16	ENSGT00950000183049.C #17	ENSGT00390000018395 #18	ENSGT00940000155914 #19	ENSGT00940000156705 #20	ENSGT00530000064192 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Megabat	MODERN SPECIES	485										GDF15 (ENSPVAG00000009921)	SSBP4 (ENSPVAG00000009922) #17	ISYNA1 (ENSPVAG00000009923) #18	ELL (ENSPVAG00000009924) #19	FKBP8 (ENSPVAG00000009926) #20	KXD1 (ENSPVAG00000009927) #21	UBA52 (ENSPVAG00000024217) #22	ENSPVAG00000009928 #23	CRLF1 (ENSPVAG00000009929) #24	TMEM59L (ENSPVAG00000009930) #25	KLHL26 (ENSPVAG00000009931) #26
Microchiroptera	ANCESTRAL SPECIES	43	ENSGT00940000160620	ENSGT00940000158959.b #7	ENSGT00940000162285 #8	ENSGT01030000234883 #9	ENSGT00940000156018.A #11	ENSGT00940000162806 #12	ENSGT00610000086173 #13	ENSGT00390000015368.a.a #14	ENSGT00940000161872	ENSGT00390000004001 #16	ENSGT00950000183049.C #17	ENSGT00390000018395 #18	ENSGT00940000155914 #19	ENSGT00940000156705 #20	ENSGT00530000064192 #21	ENSGT00940000153593.c.a #22	ENSGT00390000011631 #23	ENSGT00940000156569.a.b #24	ENSGT00390000008279.b #25	ENSGT00940000159238 #26	ENSGT00390000010652.D.b #27	ENSGT00940000162169 #28	ENSGT00940000157413 #29	ENSGT00940000162926 #30	ENSGT01030000234515.b #31	ENSGT00390000003478 #32	ENSGT00730000111231 #33	ENSGT00940000158081 #34	ENSGT00410000025695.b #35	ENSGT00390000002913 #36	ENSGT00940000158163 #37
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1005	NADK2 (ENSMLUG00000002689)	RANBP3L (ENSMLUG00000002697)	NIPBL (ENSMLUG00000001724)	ENSMLUG00000011746	ENSMLUG00000029621	NUP155 (ENSMLUG00000014272)	WDR70 (ENSMLUG00000004998)	GDNF (ENSMLUG00000005002)	EGFLAM (ENSMLUG00000012866)	LIFR (ENSMLUG00000015027)	OSMR (ENSMLUG00000005743)	RICTOR (ENSMLUG00000005754)	FYB1 (ENSMLUG00000002937)	C9 (ENSMLUG00000005440)	DAB2 (ENSMLUG00000005444)	ENSMLUG00000027508 #22	ENSMLUG00000006820	ENSMLUG00000030031	ENSMLUG00000029265	PTGER4 (ENSMLUG00000010038)	TTC33 (ENSMLUG00000012023)	PRKAA1 (ENSMLUG00000014242)	RPL37 (ENSMLUG00000001565)	ENSMLUG00000007572	C7 (ENSMLUG00000007586)	MROH2B (ENSMLUG00000007613)	C6 (ENSMLUG00000016910)	PLCXD3 (ENSMLUG00000016916)	ENSMLUG00000009431	RIMOC1 (ENSMLUG00000007915)	FBXO4 (ENSMLUG00000014799)
Microbat	MODERN SPECIES	1248	IFI30 (ENSMLUG00000000931)	MPV17L2 (ENSMLUG00000024457)	PDE4C (ENSMLUG00000003985) #8	ENSMLUG00000003998 #11	LSM4 (ENSMLUG00000004010) #13	PGPEP1 (ENSMLUG00000002092) #14	ENSMLUG00000023172	GDF15 (ENSMLUG00000002100)	LRRC25 (ENSMLUG00000002102) #16	SSBP4 (ENSMLUG00000002107) #17	ISYNA1 (ENSMLUG00000002119) #18	ENSMLUG00000002123 #19	ENSMLUG00000023645 #19	FKBP8 (ENSMLUG00000002128) #20	KXD1 (ENSMLUG00000002143) #21	ENSMLUG00000029594 #22	REX1BD (ENSMLUG00000030218) #23	CRLF1 (ENSMLUG00000002437) #24	ENSMLUG00000028871	KLHL26 (ENSMLUG00000003470) #26	CRTC1 (ENSMLUG00000012234) #27	COMP (ENSMLUG00000012249) #28	UPF1 (ENSMLUG00000012122) #29	ENSMLUG00000012140 #30	ENSMLUG00000026905 #31	COPE (ENSMLUG00000012147) #32	DDX49 (ENSMLUG00000012159) #33	HOMER3 (ENSMLUG00000012170) #34	ENSMLUG00000025755	SUGP2 (ENSMLUG00000012189) #35	ENSMLUG00000012203 #36