Rodentia_A ANCESTRAL SPECIES ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630 ENSGT00940000162160 ENSGT00390000014553 ENSGT01030000234531.A.b.b.b.e.b ENSGT01030000234531.A.b.b.b.f ENSGT00940000162571 #19 ENSGT00390000000013 #20 ENSGT00940000159410 #21 ENSGT00390000002770 ENSGT00940000154570.a.b ##22 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Sciuridae ANCESTRAL SPECIES 3 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630 ENSGT00940000162160 ENSGT00390000014553 ENSGT01030000234531.A.b.b.b.f.b.b ENSGT00940000162571 #19 ENSGT00390000000013 #20 ENSGT00940000159410 #21 ENSGT00940000154570.a.b ##22 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Marmotini ANCESTRAL SPECIES ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630.c ENSGT00940000162160 ENSGT00390000014553 ENSGT00940000162571 #19 ENSGT00390000000013 #20 ENSGT00940000159410 #21 ENSGT00940000154570.a.b ##22 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Alpin marmot MODERN SPECIES 15 LRRC38 (ENSMMMG00000021887) #19 ENSMMMG00000021882 #20 PRDM2 (ENSMMMG00000021858) #21 KAZN (ENSMMMG00000021835) #22 TMEM51 (ENSMMMG00000021802) #23 FHAD1 (ENSMMMG00000021774) #24 EFHD2 (ENSMMMG00000021754) #25 ENSMMMG00000021744 #26 CASP9 (ENSMMMG00000021730) #27 DNAJC16 (ENSMMMG00000021719) #28 AGMAT (ENSMMMG00000021713) #29 DDI2 (ENSMMMG00000021707) #30 PLEKHM2 (ENSMMMG00000021689) #31 SLC25A34 (ENSMMMG00000021668) #32 TMEM82 (ENSMMMG00000021661) #33 FBLIM1 (ENSMMMG00000021649) #34 ENSMMMG00000021647 #35 ZBTB17 (ENSMMMG00000021636) #36 SRARP (ENSMMMG00000021634) #37 Marmotini_b ANCESTRAL SPECIES ENSGT00390000007643 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630.c ENSGT00940000162160 ENSGT00390000014553 ENSGT00940000162571 #19 ENSGT00390000000013 #20 ENSGT00940000159410 #21 ENSGT00940000154570.a.b ##22 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Squirrel DUPLICATION Squirrel MODERN SPECIES 74 NPPB (ENSSTOG00000020778) KIAA2013 (ENSSTOG00000027586) PLOD1 (ENSSTOG00000009927) MFN2 (ENSSTOG00000005705) MIIP (ENSSTOG00000024734) TNFRSF1B (ENSSTOG00000024605) VPS13D (ENSSTOG00000005519) DHRS3 (ENSSTOG00000016015) AADACL4 (ENSSTOG00000019534) AADACL3 (ENSSTOG00000007059) CFAP107 (ENSSTOG00000009816) LRRC38 (ENSSTOG00000023111) #19 PDPN (ENSSTOG00000032629) #20 PRDM2 (ENSSTOG00000019848) #21 ENSSTOG00000023112 #22 ENSSTOG00000030433 #22 TMEM51 (ENSSTOG00000020167) #23 FHAD1 (ENSSTOG00000023646) #24 EFHD2 (ENSSTOG00000025403) #25 ENSSTOG00000032931 ENSSTOG00000021532 #26 ENSSTOG00000028042 DNAJC16 (ENSSTOG00000013804) #28 AGMAT (ENSSTOG00000013813) #29 DDI2 (ENSSTOG00000019447) #30 RSC1A1 (ENSSTOG00000025982) PLEKHM2 (ENSSTOG00000013821) #31 SLC25A34 (ENSSTOG00000013833) #32 TMEM82 (ENSSTOG00000025954) #33 FBLIM1 (ENSSTOG00000028645) #34 ENSSTOG00000029207 #35 Squirrel MODERN SPECIES 74 ENSSTOG00000007663 NPPB (ENSSTOG00000020778) KIAA2013 (ENSSTOG00000027586) PLOD1 (ENSSTOG00000009927) MFN2 (ENSSTOG00000005705) MIIP (ENSSTOG00000024734) TNFRSF1B (ENSSTOG00000024605) VPS13D (ENSSTOG00000005519) DHRS3 (ENSSTOG00000016015) AADACL4 (ENSSTOG00000019534) AADACL3 (ENSSTOG00000007059) CFAP107 (ENSSTOG00000009816) LRRC38 (ENSSTOG00000023111) #19 PDPN (ENSSTOG00000032629) #20 PRDM2 (ENSSTOG00000019848) #21 ENSSTOG00000023112 #22 ENSSTOG00000030433 #22 TMEM51 (ENSSTOG00000020167) #23 FHAD1 (ENSSTOG00000023646) #24 EFHD2 (ENSSTOG00000025403) #25 ENSSTOG00000032931 ENSSTOG00000021532 #26 ENSSTOG00000028042 DNAJC16 (ENSSTOG00000013804) #28 AGMAT (ENSSTOG00000013813) #29 DDI2 (ENSSTOG00000019447) #30 RSC1A1 (ENSSTOG00000025982) PLEKHM2 (ENSSTOG00000013821) #31 SLC25A34 (ENSSTOG00000013833) #32 TMEM82 (ENSSTOG00000025954) #33 FBLIM1 (ENSSTOG00000028645) #34 Arctic ground squirrel MODERN SPECIES 451 LRRC38 (ENSUPAG00010007763) #19 PDPN (ENSUPAG00010007766) #20 PRDM2 (ENSUPAG00010007769) #21 ENSUPAG00010007797 ##22 KAZN (ENSUPAG00010007804) #22 TMEM51 (ENSUPAG00010007834) #23 FHAD1 (ENSUPAG00010007841) #24 EFHD2 (ENSUPAG00010007892) #25 Eurasian red squirrel MODERN SPECIES MFN2 (ENSSVLG00005006764) MIIP (ENSSVLG00005006797) TNFRSF8 (ENSSVLG00005006831) ENSSVLG00005006934 TNFRSF1B (ENSSVLG00005006983) VPS13D (ENSSVLG00005007158) DHRS3 (ENSSVLG00005007738) ENSSVLG00005007795 ENSSVLG00005007846 AADACL3 (ENSSVLG00005007922) CFAP107 (ENSSVLG00005007956) ENSSVLG00005008079 LRRC38 (ENSSVLG00005008488) #19 PDPN (ENSSVLG00005008527) #20 PRDM2 (ENSSVLG00005008674) #21 KAZN (ENSSVLG00005008929) #22 TMEM51 (ENSSVLG00005009207) #23 FHAD1 (ENSSVLG00005009255) #24 EFHD2 (ENSSVLG00005009504) #25 CTRC (ENSSVLG00005009531) ENSSVLG00005009617 #26 ENSSVLG00005009810 #26 ENSSVLG00005009886 DNAJC16 (ENSSVLG00005009925) #28 ENSSVLG00005009978 AGMAT (ENSSVLG00005010003) #29 DDI2 (ENSSVLG00005010074) #30 RSC1A1 (ENSSVLG00005010092) PLEKHM2 (ENSSVLG00005010150) #31 SLC25A34 (ENSSVLG00005010194) #32 TMEM82 (ENSSVLG00005010237) #33 Hystricomorpha ANCESTRAL SPECIES 4 ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630.h ENSGT00940000157630.g.a ENSGT00940000157630.g.b ENSGT00940000162160 ENSGT00390000014553 ENSGT01030000234531.A.b.b.b.e.b.c ENSGT00940000162571 #19 ENSGT00390000000013 #20 ENSGT00940000170582 ENSGT00940000159410 #21 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Naked mole-rat female MODERN SPECIES 26 ENSHGLG00000007958 TCEANC2 (ENSHGLG00000046573) ENSHGLG00000043225 LRRC42 (ENSHGLG00000000742) ENSHGLG00000001352 ENSHGLG00000040583 ENSHGLG00000042903 ENSHGLG00000046232 NDC1 (ENSHGLG00000001547) ENSHGLG00000041952 LRP8 (ENSHGLG00000001818) ENSHGLG00000001648 ENSHGLG00000002034 CPT2 (ENSHGLG00000003070) ENSHGLG00000035804 ENSHGLG00000009940 #22 TMEM51 (ENSHGLG00000013366) #23 FHAD1 (ENSHGLG00000018196) #24 EFHD2 (ENSHGLG00000046486) #25 CTRC (ENSHGLG00000018486) ENSHGLG00000016895 #26 CASP9 (ENSHGLG00000019310) #27 DNAJC16 (ENSHGLG00000014574) #28 AGMAT (ENSHGLG00000007473) #29 ENSHGLG00000038027 PLEKHM2 (ENSHGLG00000007190) #31 SLC25A34 (ENSHGLG00000032560) #32 TMEM82 (ENSHGLG00000011424) #33 FBLIM1 (ENSHGLG00000019134) #34 ENSHGLG00000014407 SPEN (ENSHGLG00000032487) Hystricomorpha_a ANCESTRAL SPECIES 1 ENSGT01030000234558.A.a.a.b ENSGT00390000013727.c ENSGT00390000003768 ENSGT00510000049215 ENSGT00940000161800 ENSGT00950000183083.b ENSGT00940000158724 ENSGT00940000157630.h ENSGT00940000157630.g.a ENSGT00940000157630.g.b ENSGT00940000162160 ENSGT00390000014553 ENSGT00940000162571 #19 ENSGT00940000170582 ENSGT00940000159410 #21 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Hystricomorpha_b ANCESTRAL SPECIES 7 ENSGT00940000162571 #19 ENSGT00940000170582 ENSGT00940000159410 #21 ENSGT00940000154570.b #22 ENSGT00390000009278 #23 ENSGT00940000154171.A #24 ENSGT00390000012058.c.b #25 ENSGT00940000153216.a.b ENSGT01030000234528.B.a.a #26 ENSGT00940000159698 #27 ENSGT00940000155851 #28 ENSGT00950000183195.a #29 ENSGT00950000182999.a.a #30 ENSGT00390000005744 ENSGT00390000015175 #31 ENSGT00940000160016 #32 ENSGT00500000045021 #33 ENSGT00940000159003 #34 ENSGT00940000157087.a.b Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 234 LRRC38 (ENSCLAG00000002559) #19 ENSCLAG00000002299 PRDM2 (ENSCLAG00000004362) #21 ENSCLAG00000003967 #22 ENSCLAG00000003684 #22 TMEM51 (ENSCLAG00000003533) #23 FHAD1 (ENSCLAG00000012202) #24 EFHD2 (ENSCLAG00000014606) #25 CTRC (ENSCLAG00000010834) ENSCLAG00000010512 #26 CASP9 (ENSCLAG00000003082) #27 DNAJC16 (ENSCLAG00000002114) #28 AGMAT (ENSCLAG00000004055) #29 ENSCLAG00000003693 PLEKHM2 (ENSCLAG00000003128) #31 SLC25A34 (ENSCLAG00000002647) #32 TMEM82 (ENSCLAG00000004347) #33 FBLIM1 (ENSCLAG00000003668) #34 SPEN (ENSCLAG00000002018) Long-tailed chinchilla MODERN SPECIES 234 LRRC38 (ENSCLAG00000002559) #19 ENSCLAG00000002299 PRDM2 (ENSCLAG00000004362) #21 ENSCLAG00000003967 #22 ENSCLAG00000003684 #22 TMEM51 (ENSCLAG00000003533) #23 FHAD1 (ENSCLAG00000012202) #24 EFHD2 (ENSCLAG00000014606) #25 CTRC (ENSCLAG00000010834) ENSCLAG00000010512 #26 CASP9 (ENSCLAG00000003082) #27 DNAJC16 (ENSCLAG00000002114) #28 AGMAT (ENSCLAG00000004055) #29 ENSCLAG00000003693 PLEKHM2 (ENSCLAG00000003128) #31 SLC25A34 (ENSCLAG00000002647) #32 TMEM82 (ENSCLAG00000004347) #33 FBLIM1 (ENSCLAG00000003668) #34 SPEN (ENSCLAG00000002018) ZBTB17 (ENSCLAG00000006044) #36 Degu DUPLICATION Degu MODERN SPECIES 133 PRDM2 (ENSODEG00000017400) #21 ENSODEG00000016425 #22 ENSODEG00000016473 #22 TMEM51 (ENSODEG00000016454) #23 FHAD1 (ENSODEG00000016605) #24 EFHD2 (ENSODEG00000016306) #25 CTRC (ENSODEG00000016340) ENSODEG00000020480 ENSODEG00000016581 #26 ENSODEG00000016480 DNAJC16 (ENSODEG00000016313) #28 AGMAT (ENSODEG00000016792) #29 DDI2 (ENSODEG00000016549) #30 RSC1A1 (ENSODEG00000016320) PLEKHM2 (ENSODEG00000016981) #31 SLC25A34 (ENSODEG00000016800) #32 TMEM82 (ENSODEG00000016458) #33 Degu MODERN SPECIES 133 PRDM2 (ENSODEG00000017400) #21 ENSODEG00000016425 #22 ENSODEG00000016473 #22 TMEM51 (ENSODEG00000016454) #23 FHAD1 (ENSODEG00000016605) #24 EFHD2 (ENSODEG00000016306) #25 CTRC (ENSODEG00000016340) ENSODEG00000020480 ENSODEG00000016581 #26 ENSODEG00000016480 DNAJC16 (ENSODEG00000016313) #28 AGMAT (ENSODEG00000016792) #29 DDI2 (ENSODEG00000016549) #30 RSC1A1 (ENSODEG00000016320) PLEKHM2 (ENSODEG00000016981) #31 SLC25A34 (ENSODEG00000016800) #32 TMEM82 (ENSODEG00000016458) #33 FBLIM1 (ENSODEG00000016558) #34 Guinea pig DUPLICATION Guinea pig MODERN SPECIES 25 PLOD1 (ENSCPOG00000020909) MFN2 (ENSCPOG00000006834) MIIP (ENSCPOG00000032652) ENSCPOG00000009191 TNFRSF1B (ENSCPOG00000020299) VPS13D (ENSCPOG00000010440) DHRS3 (ENSCPOG00000001600) ENSCPOG00000010237 ENSCPOG00000015038 ENSCPOG00000011374 AADACL3 (ENSCPOG00000000228) CFAP107 (ENSCPOG00000003643) LRRC38 (ENSCPOG00000031681) #19 ENSCPOG00000038973 PRDM2 (ENSCPOG00000038436) #21 ENSCPOG00000007591 #22 ENSCPOG00000035462 #22 TMEM51 (ENSCPOG00000035704) #23 FHAD1 (ENSCPOG00000014449) #24 EFHD2 (ENSCPOG00000022076) #25 CTRC (ENSCPOG00000034507) ENSCPOG00000039418 #26 ENSCPOG00000038747 #26 CASP9 (ENSCPOG00000012051) #27 DNAJC16 (ENSCPOG00000012059) #28 AGMAT (ENSCPOG00000026931) #29 DDI2 (ENSCPOG00000020885) #30 RSC1A1 (ENSCPOG00000012066) PLEKHM2 (ENSCPOG00000012069) #31 SLC25A34 (ENSCPOG00000012078) #32 TMEM82 (ENSCPOG00000012084) #33 Guinea pig MODERN SPECIES 25 MFN2 (ENSCPOG00000006834) MIIP (ENSCPOG00000032652) ENSCPOG00000009191 TNFRSF1B (ENSCPOG00000020299) VPS13D (ENSCPOG00000010440) DHRS3 (ENSCPOG00000001600) ENSCPOG00000010237 ENSCPOG00000015038 ENSCPOG00000011374 AADACL3 (ENSCPOG00000000228) CFAP107 (ENSCPOG00000003643) LRRC38 (ENSCPOG00000031681) #19 ENSCPOG00000038973 PRDM2 (ENSCPOG00000038436) #21 ENSCPOG00000007591 #22 ENSCPOG00000035462 #22 TMEM51 (ENSCPOG00000035704) #23 FHAD1 (ENSCPOG00000014449) #24 EFHD2 (ENSCPOG00000022076) #25 CTRC (ENSCPOG00000034507) ENSCPOG00000039418 #26 ENSCPOG00000038747 #26 CASP9 (ENSCPOG00000012051) #27 DNAJC16 (ENSCPOG00000012059) #28 AGMAT (ENSCPOG00000026931) #29 DDI2 (ENSCPOG00000020885) #30 RSC1A1 (ENSCPOG00000012066) PLEKHM2 (ENSCPOG00000012069) #31 SLC25A34 (ENSCPOG00000012078) #32 TMEM82 (ENSCPOG00000012084) #33 FBLIM1 (ENSCPOG00000024867) #34