Glires	ANCESTRAL SPECIES		ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b #16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Rodentia	ANCESTRAL SPECIES		ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.f ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.a #10	ENSGT00940000157630.b.b #12	ENSGT00940000157630.b.a #13	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Lesser Egyptian jerboa	MODERN SPECIES	63	Tnfrsf1b (ENSJJAG00000010813) #7	Vps13d (ENSJJAG00000013581) #8	Dhrs3 (ENSJJAG00000010964) #9	ENSJJAG00000011214 #10	ENSJJAG00000010939 #11	ENSJJAG00000009632 #12	Aadacl4fm1 (ENSJJAG00000011655) #13	Aadacl3 (ENSJJAG00000011110) #14	Cfap107 (ENSJJAG00000012706) #15	ENSJJAG00000013886 #16	ENSJJAG00000011316 #17	ENSJJAG00000007952 #18	Lrrc38 (ENSJJAG00000010300) #19	Pdpn (ENSJJAG00000011298) #20	Prdm2 (ENSJJAG00000013245) #21	Kazn (ENSJJAG00000013027) #22	Tmem51 (ENSJJAG00000007750) #23	Fhad1 (ENSJJAG00000011545) #24	Efhd2 (ENSJJAG00000005238) #25	ENSJJAG00000011961 #26	Cela2a (ENSJJAG00000012004) #27	ENSJJAG00000010832 #28	Dnajc16 (ENSJJAG00000007639) #29	Agmat (ENSJJAG00000000771) #30	ENSJJAG00000008758 #31	ENSJJAG00000002222 #32	Plekhm2 (ENSJJAG00000009735) #33	Slc25a34 (ENSJJAG00000001837) #34	Tmem82 (ENSJJAG00000011441) #35	Fblim1 (ENSJJAG00000013123) #36	Spen (ENSJJAG00000010882) #37
Muroidea	ANCESTRAL SPECIES	3	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.a.a #10	ENSGT00940000157630.a.b #10	ENSGT00940000157630.b.b #12	ENSGT00940000157630.b.a #13	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1803																ENSNGAG00000013647 #22	ENSNGAG00000018275 #22	Tmem51 (ENSNGAG00000012512) #23	Fhad1 (ENSNGAG00000002450) #24	Efhd2 (ENSNGAG00000018634) #25	ENSNGAG00000020581 #26	Cela2a (ENSNGAG00000019296) #27	Casp9 (ENSNGAG00000003405)	Dnajc16 (ENSNGAG00000013158) #29	Agmat (ENSNGAG00000006410) #30	ENSNGAG00000008573 #31	ENSNGAG00000011605 #32	Plekhm2 (ENSNGAG00000018802) #33	Slc25a34 (ENSNGAG00000019484) #34	Tmem82 (ENSNGAG00000020347) #35	Fblim1 (ENSNGAG00000017164) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1803															ENSNGAG00000013647 #22	ENSNGAG00000018275 #22	Tmem51 (ENSNGAG00000012512) #23	Fhad1 (ENSNGAG00000002450) #24	Efhd2 (ENSNGAG00000018634) #25	ENSNGAG00000020581 #26	Cela2a (ENSNGAG00000019296) #27	Casp9 (ENSNGAG00000003405)	Dnajc16 (ENSNGAG00000013158) #29	Agmat (ENSNGAG00000006410) #30	ENSNGAG00000008573 #31	ENSNGAG00000011605 #32	Plekhm2 (ENSNGAG00000018802) #33	Slc25a34 (ENSNGAG00000019484) #34	Tmem82 (ENSNGAG00000020347) #35	Fblim1 (ENSNGAG00000017164) #36	Spen (ENSNGAG00000000641) #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000157630.a.a.b #10	ENSGT00940000157630.a.b #10	ENSGT00940000163565	ENSGT00940000157630.b.a #13	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus	ANCESTRAL SPECIES	3	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus_A	ANCESTRAL SPECIES	3	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus_C	ANCESTRAL SPECIES	2	ENSGT00860000136337	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.b.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
spretus	MODERN SPECIES	13	MGP_SPRETEiJ_G0027754 ##16	MGP_SPRETEiJ_G0027753 ##16	MGP_SPRETEiJ_G0027752 ##16	MGP_SPRETEiJ_G0027751 ##16	MGP_SPRETEiJ_G0027750 ##16	MGP_SPRETEiJ_G0027749 ##16	MGP_SPRETEiJ_G0027748 ##16	MGP_SPRETEiJ_G0027747 ##16	MGP_SPRETEiJ_G0027746 ##16	Oog4 (MGP_SPRETEiJ_G0027745) ##16	Pramel12 (MGP_SPRETEiJ_G0027744) ##16	Pramel1 (MGP_SPRETEiJ_G0027743) ##16	Lrrc38 (MGP_SPRETEiJ_G0027742) #19	Pdpn (MGP_SPRETEiJ_G0027741) #20	Prdm2 (MGP_SPRETEiJ_G0027740) #21	Kazn (MGP_SPRETEiJ_G0027739) #22	Tmem51 (MGP_SPRETEiJ_G0027738) #23	Fhad1 (MGP_SPRETEiJ_G0027737) #24	Efhd2 (MGP_SPRETEiJ_G0027736) #25	MGP_SPRETEiJ_G0027735	Cela2a (MGP_SPRETEiJ_G0027734) #27	Casp9 (MGP_SPRETEiJ_G0027733)	Dnajc16 (MGP_SPRETEiJ_G0027732) #29	Agmat (MGP_SPRETEiJ_G0027731) #30	MGP_SPRETEiJ_G0027730 #32	MGP_SPRETEiJ_G0027729 #32	Plekhm2 (MGP_SPRETEiJ_G0027728) #33	Slc25a34 (MGP_SPRETEiJ_G0027727) #34	Tmem82 (MGP_SPRETEiJ_G0027726) #35	Fblim1 (MGP_SPRETEiJ_G0027725) #36	Spen (MGP_SPRETEiJ_G0027724) #37
Steppe mouse	MODERN SPECIES	3329							ENSMSIG00000015535 ##16	Oog4 (ENSMSIG00000015458) ##16	Pramel12 (ENSMSIG00000015426) ##16	Pramel1 (ENSMSIG00000015411) ##16	ENSMSIG00000015393 #19	Pdpn (ENSMSIG00000015317) #20	ENSMSIG00000015307	Prdm2 (ENSMSIG00000015257) #21	ENSMSIG00000015235 ##22	Kazn (ENSMSIG00000015206) #22	ENSMSIG00000015199	Tmem51 (ENSMSIG00000015190) #23	Fhad1 (ENSMSIG00000014775) #24	Efhd2 (ENSMSIG00000014750) #25	ENSMSIG00000014707 #26	Cela2a (ENSMSIG00000014686) #27	Casp9 (ENSMSIG00000014653)	Dnajc16 (ENSMSIG00000014635) #29	Agmat (ENSMSIG00000014614) #30	ENSMSIG00000014561 #32	Plekhm2 (ENSMSIG00000014394) #33	Slc25a34 (ENSMSIG00000014377) #34	Tmem82 (ENSMSIG00000014350) #35	Fblim1 (ENSMSIG00000014313) #36	Spen (ENSMSIG00000014208) #37
Mouse	MODERN SPECIES	13	Pramel24 (ENSMUSG00000046435) ##16	Pramel23 (ENSMUSG00000070617) ##16	Pramel22 (ENSMUSG00000078513) ##16	Pramel21 (ENSMUSG00000066688) ##16	Pramel20 (ENSMUSG00000070618) ##16	Gm13057 (ENSMUSG00000096154) ##16	Gm13040 (ENSMUSG00000070616) ##16	Gm13043 (ENSMUSG00000095409) ##16	Oog4 (ENSMUSG00000047799) ##16	Pramel12 (ENSMUSG00000046862) ##16	Pramel1 (ENSMUSG00000041805) ##16	Lrrc38 (ENSMUSG00000028584) #19	Pdpn (ENSMUSG00000028583) #20	Prdm2 (ENSMUSG00000057637) #21	6330411D24Rik (ENSMUSG00000110067)	Kazn (ENSMUSG00000040606) #22	Tmem51 (ENSMUSG00000040616) #23	Fhad1 (ENSMUSG00000051435) #24	Efhd2 (ENSMUSG00000040659) #25	Ctrc (ENSMUSG00000062478)	Cela2a (ENSMUSG00000058579) #27	Casp9 (ENSMUSG00000028914)	Dnajc16 (ENSMUSG00000040697) #29	Agmat (ENSMUSG00000040706) #30	Rsc1a1 (ENSMUSG00000040715) #32	Ddi2 (ENSMUSG00000078515) #32	Plekhm2 (ENSMUSG00000028917) #33	Slc25a34 (ENSMUSG00000040740) #34	Tmem82 (ENSMUSG00000043085) #35	Fblim1 (ENSMUSG00000006219) #36	Spen (ENSMUSG00000040761) #37
Ryukyu mouse	MODERN SPECIES	13	Aadacl4fm2 (MGP_CAROLIEiJ_G0026774)	Aadacl4fm1 (MGP_CAROLIEiJ_G0026773) #13	Aadacl3 (MGP_CAROLIEiJ_G0026772) #14	MGP_CAROLIEiJ_G0026771	Cfap107 (MGP_CAROLIEiJ_G0026770) #15	Pramel13 (MGP_CAROLIEiJ_G0026769) #16	MGP_CAROLIEiJ_G0026768 ##16	MGP_CAROLIEiJ_G0026767 ##16	MGP_CAROLIEiJ_G0026766 ##16	Oog4 (MGP_CAROLIEiJ_G0026765) ##16	Pramel12 (MGP_CAROLIEiJ_G0026764) ##16	Pramel1 (MGP_CAROLIEiJ_G0026763) ##16	Lrrc38 (MGP_CAROLIEiJ_G0026762) #19	Pdpn (MGP_CAROLIEiJ_G0026761) #20	Prdm2 (MGP_CAROLIEiJ_G0026760) #21	Kazn (MGP_CAROLIEiJ_G0026759) #22	Tmem51 (MGP_CAROLIEiJ_G0026758) #23	Fhad1 (MGP_CAROLIEiJ_G0026757) #24	Efhd2 (MGP_CAROLIEiJ_G0026756) #25	MGP_CAROLIEiJ_G0026755	MGP_CAROLIEiJ_G0026754	Dnajc16 (MGP_CAROLIEiJ_G0026753) #29	Agmat (MGP_CAROLIEiJ_G0026752) #30	MGP_CAROLIEiJ_G0026751 #32	MGP_CAROLIEiJ_G0026750 #32	Plekhm2 (MGP_CAROLIEiJ_G0026749) #33	Slc25a34 (MGP_CAROLIEiJ_G0026748) #34	Tmem82 (MGP_CAROLIEiJ_G0026747) #35	Fblim1 (MGP_CAROLIEiJ_G0026746) #36	Spen (MGP_CAROLIEiJ_G0026745) #37	Zbtb17 (MGP_CAROLIEiJ_G0026744)
Shrew mouse	MODERN SPECIES	19	Pramel15 (MGP_PahariEiJ_G0029106) ##16	MGP_PahariEiJ_G0029105 ##16	MGP_PahariEiJ_G0029104 ##16	MGP_PahariEiJ_G0029103 ##16	MGP_PahariEiJ_G0029102 ##16	MGP_PahariEiJ_G0029101 ##16	MGP_PahariEiJ_G0029100 ##16	MGP_PahariEiJ_G0029099 ##16	MGP_PahariEiJ_G0029098 ##16	MGP_PahariEiJ_G0029097 ##16	Pramel12 (MGP_PahariEiJ_G0029096) ##16	Pramel1 (MGP_PahariEiJ_G0029095) ##16	Lrrc38 (MGP_PahariEiJ_G0029094) #19	Pdpn (MGP_PahariEiJ_G0029093) #20	Prdm2 (MGP_PahariEiJ_G0029092) #21	Kazn (MGP_PahariEiJ_G0029091) #22	Tmem51 (MGP_PahariEiJ_G0029090) #23	Fhad1 (MGP_PahariEiJ_G0029089) #24	Efhd2 (MGP_PahariEiJ_G0029088) #25	MGP_PahariEiJ_G0029087	Cela2a (MGP_PahariEiJ_G0029086) #27	Casp9 (MGP_PahariEiJ_G0029085)	Dnajc16 (MGP_PahariEiJ_G0029084) #29	Agmat (MGP_PahariEiJ_G0029083) #30	MGP_PahariEiJ_G0029082 #32	MGP_PahariEiJ_G0029081 #32	Plekhm2 (MGP_PahariEiJ_G0029080) #33	Slc25a34 (MGP_PahariEiJ_G0029079) #34	Tmem82 (MGP_PahariEiJ_G0029078) #35	Fblim1 (MGP_PahariEiJ_G0029077) #36	Spen (MGP_PahariEiJ_G0029076) #37
Rat	MODERN SPECIES	15	Pramef17 (ENSRNOG00000042820) ##16	RGD1306186 (ENSRNOG00000037039) ##16	LOC120103107 (ENSRNOG00000047341) ##16	Oog1 (ENSRNOG00000027142) ##16	ENSRNOG00000065869 ##16	Pramef5 (ENSRNOG00000067307) ##16	Oog3 (ENSRNOG00000033000) ##16	Pramef8 (ENSRNOG00000027278) ##16	Pramef27 (ENSRNOG00000027328) ##16	Lrrc38 (ENSRNOG00000015264) #19	Pdpn (ENSRNOG00000014961) #20	ENSRNOG00000070725	LOC100359951 (ENSRNOG00000071148)	Prdm2 (ENSRNOG00000033522) #21	6330411D24Rik (ENSRNOG00000065736)	Kazn (ENSRNOG00000014322) #22	ENSRNOG00000070661	Tmem51 (ENSRNOG00000014197) #23	Fhad1 (ENSRNOG00000028064) #24	Efhd2 (ENSRNOG00000013783) #25	Ctrc (ENSRNOG00000013745) #26	Cela2a (ENSRNOG00000013628) #27	Casp9 (ENSRNOG00000012944)	Dnajc16 (ENSRNOG00000012503) #29	Agmat (ENSRNOG00000012315) #30	Ddi2 (ENSRNOG00000012274) #32	Plekhm2 (ENSRNOG00000012163) #33	Tmem82 (ENSRNOG00000011970) #35	Fblim1 (ENSRNOG00000011774) #36	Spen (ENSRNOG00000033556) #37	Zbtb17 (ENSRNOG00000010436)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000157630.a.a.a #10	ENSGT00940000157630.a.a.b #10	ENSGT00940000157630.a.b #10	ENSGT00940000163565	ENSGT00940000157630.b.a #13	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.a.a.b #10	ENSGT00940000157630.a.b #10	ENSGT00940000157630.b.b #12	ENSGT00940000157630.b.a #13	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.e.a.b.a ##16	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	726										Pramel12 (ENSMAUG00000013165) ##16	Pramel1 (ENSMAUG00000017344) ##16	Lrrc38 (ENSMAUG00000019684) #19	Pdpn (ENSMAUG00000013176) #20	Prdm2 (ENSMAUG00000017021) #21	ENSMAUG00000009108 #22	ENSMAUG00000010094 #22	Tmem51 (ENSMAUG00000007940) #23	Fhad1 (ENSMAUG00000001064) #24	Efhd2 (ENSMAUG00000001147) #25	ENSMAUG00000007283 #26	Cela2a (ENSMAUG00000010885) #27	Casp9 (ENSMAUG00000014326)	Dnajc16 (ENSMAUG00000021653) #29	Agmat (ENSMAUG00000022247) #30	ENSMAUG00000020325 #31	Plekhm2 (ENSMAUG00000010838) #33	Slc25a34 (ENSMAUG00000020022) #34	Tmem82 (ENSMAUG00000007567) #35	Fblim1 (ENSMAUG00000018139) #36	Spen (ENSMAUG00000008318) #37	Zbtb17 (ENSMAUG00000001376)
Golden Hamster	MODERN SPECIES	726											Pramel12 (ENSMAUG00000013165) ##16	Pramel1 (ENSMAUG00000017344) ##16	Lrrc38 (ENSMAUG00000019684) #19	Pdpn (ENSMAUG00000013176) #20	Prdm2 (ENSMAUG00000017021) #21	ENSMAUG00000009108 #22	ENSMAUG00000010094 #22	Tmem51 (ENSMAUG00000007940) #23	Fhad1 (ENSMAUG00000001064) #24	Efhd2 (ENSMAUG00000001147) #25	ENSMAUG00000007283 #26	Cela2a (ENSMAUG00000010885) #27	Casp9 (ENSMAUG00000014326)	Dnajc16 (ENSMAUG00000021653) #29	Agmat (ENSMAUG00000022247) #30	ENSMAUG00000020325 #31	Plekhm2 (ENSMAUG00000010838) #33	Slc25a34 (ENSMAUG00000020022) #34	Tmem82 (ENSMAUG00000007567) #35	Fblim1 (ENSMAUG00000018139) #36	Spen (ENSMAUG00000008318) #37
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	111	Vps13d (ENSCGRG00001023868) #8	Dhrs3 (ENSCGRG00001012549) #9	Aadacl4fm4 (ENSCGRG00001018913) #10	Aadacl4 (ENSCGRG00001021022) #10	ENSCGRG00001024601 #12	Aadacl4fm1 (ENSCGRG00001024757) #13	Aadacl3 (ENSCGRG00001024964) #14	Cfap107 (ENSCGRG00001025039) #15	Pramel13 (ENSCGRG00001018269) #16	Pramel15 (ENSCGRG00001024569) ##16	Pramel12 (ENSCGRG00001024998) ##16	Pramel1 (ENSCGRG00001003207) ##16	Lrrc38 (ENSCGRG00001015382) #19	Pdpn (ENSCGRG00001019750) #20	Prdm2 (ENSCGRG00001020470) #21	ENSCGRG00001022553 #22	Tmem51 (ENSCGRG00001023938) #23	ENSCGRG00001024256 #22	Fhad1 (ENSCGRG00001024955) #24	Efhd2 (ENSCGRG00001016692) #25	ENSCGRG00001018143 #26	ENSCGRG00001024391 #27	Casp9 (ENSCGRG00001012293)	Dnajc16 (ENSCGRG00001019382) #29	Agmat (ENSCGRG00001022077) #30	ENSCGRG00001024250 #32	Plekhm2 (ENSCGRG00001011209) #33	Slc25a34 (ENSCGRG00001021299) #34	Tmem82 (ENSCGRG00001022720) #35	Fblim1 (ENSCGRG00001024160) #36	Spen (ENSCGRG00001007725) #37
Chinese hamster chok1gshd	MODERN SPECIES	111	Aadacl4fm4 (ENSCGRG00001018913) #10	Aadacl4 (ENSCGRG00001021022) #10	ENSCGRG00001024601 #12	Aadacl4fm1 (ENSCGRG00001024757) #13	Aadacl3 (ENSCGRG00001024964) #14	Cfap107 (ENSCGRG00001025039) #15	Pramel13 (ENSCGRG00001018269) #16	Pramel15 (ENSCGRG00001024569) ##16	Pramel12 (ENSCGRG00001024998) ##16	Pramel1 (ENSCGRG00001003207) ##16	Lrrc38 (ENSCGRG00001015382) #19	Pdpn (ENSCGRG00001019750) #20	Prdm2 (ENSCGRG00001020470) #21	ENSCGRG00001022553 #22	Tmem51 (ENSCGRG00001023938) #23	ENSCGRG00001024256 #22	Fhad1 (ENSCGRG00001024955) #24	Efhd2 (ENSCGRG00001016692) #25	ENSCGRG00001018143 #26	ENSCGRG00001024391 #27	Casp9 (ENSCGRG00001012293)	Dnajc16 (ENSCGRG00001019382) #29	Agmat (ENSCGRG00001022077) #30	ENSCGRG00001024250 #32	Plekhm2 (ENSCGRG00001011209) #33	Slc25a34 (ENSCGRG00001021299) #34	Tmem82 (ENSCGRG00001022720) #35	Fblim1 (ENSCGRG00001024160) #36	Spen (ENSCGRG00001007725) #37	Zbtb17 (ENSCGRG00001019408)	Srarp (ENSCGRG00001024454)
Cricetidae_B	ANCESTRAL SPECIES	2										ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b ##16	ENSGT01030000234531.A.b.b.b.e.a.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	ENSMOCG00000005802	E330021D16Rik (ENSMOCG00000006042)	Usp9x (ENSMOCG00000009609)	ENSMOCG00000008046	Ddx3x (ENSMOCG00000014170)	Nyx (ENSMOCG00000018188)	Cask (ENSMOCG00000007637)	Gpr34 (ENSMOCG00000016433)	Gpr82 (ENSMOCG00000003874)	ENSMOCG00000016039	Lrrc38 (ENSMOCG00000014237) #19	ENSMOCG00000015618	ENSMOCG00000018838	ENSMOCG00000021077 #21	ENSMOCG00000002830 #22	ENSMOCG00000007192 #22	Tmem51 (ENSMOCG00000009847) #23	Fhad1 (ENSMOCG00000015308) #24	Efhd2 (ENSMOCG00000002945) #25	ENSMOCG00000006919 #26	Cela2a (ENSMOCG00000019141) #27	Casp9 (ENSMOCG00000020323)	Dnajc16 (ENSMOCG00000018345) #29	Agmat (ENSMOCG00000006579) #30	ENSMOCG00000008741 #31	Plekhm2 (ENSMOCG00000016353) #33	Slc25a34 (ENSMOCG00000001770) #34	Tmem82 (ENSMOCG00000004076) #35	Spen (ENSMOCG00000016083) #37	Zbtb17 (ENSMOCG00000005017)	Hspb7 (ENSMOCG00000015401)
Prairie vole	MODERN SPECIES	1	ENSMOCG00000016742	ENSMOCG00000005802	E330021D16Rik (ENSMOCG00000006042)	Usp9x (ENSMOCG00000009609)	ENSMOCG00000008046	Ddx3x (ENSMOCG00000014170)	Nyx (ENSMOCG00000018188)	Cask (ENSMOCG00000007637)	Gpr34 (ENSMOCG00000016433)	Gpr82 (ENSMOCG00000003874)	ENSMOCG00000016039	Lrrc38 (ENSMOCG00000014237) #19	ENSMOCG00000015618	ENSMOCG00000018838	ENSMOCG00000021077 #21	ENSMOCG00000002830 #22	ENSMOCG00000007192 #22	Tmem51 (ENSMOCG00000009847) #23	Fhad1 (ENSMOCG00000015308) #24	Efhd2 (ENSMOCG00000002945) #25	ENSMOCG00000006919 #26	Cela2a (ENSMOCG00000019141) #27	Casp9 (ENSMOCG00000020323)	Dnajc16 (ENSMOCG00000018345) #29	Agmat (ENSMOCG00000006579) #30	ENSMOCG00000008741 #31	Plekhm2 (ENSMOCG00000016353) #33	Slc25a34 (ENSMOCG00000001770) #34	Tmem82 (ENSMOCG00000004076) #35	Spen (ENSMOCG00000016083) #37	Zbtb17 (ENSMOCG00000005017)
Northern American deer mouse	MODERN SPECIES	11	Pank4 (ENSPEMG00000018726)	Hes5 (ENSPEMG00000031266)	Tnfrsf14 (ENSPEMG00000016250)	Prxl2b (ENSPEMG00000016639)	Mmel1 (ENSPEMG00000015360)	ENSPEMG00000003914	Actrt2 (ENSPEMG00000014225)	ENSPEMG00000027963	Pramel12 (ENSPEMG00000023636) ##16	ENSPEMG00000025426 ##16	Pramel1 (ENSPEMG00000021753) ##16	Lrrc38 (ENSPEMG00000027448) #19	Pdpn (ENSPEMG00000007524) #20	Prdm2 (ENSPEMG00000023130) #21	ENSPEMG00000028452 ##22	Kazn (ENSPEMG00000021311) #22	Tmem51 (ENSPEMG00000031341) #23	Fhad1 (ENSPEMG00000005222) #24	Efhd2 (ENSPEMG00000001500) #25	ENSPEMG00000009764 #27	Cela2a (ENSPEMG00000023249) #27	Casp9 (ENSPEMG00000022246)	Dnajc16 (ENSPEMG00000023576) #29	Agmat (ENSPEMG00000022206) #30	ENSPEMG00000021491 #31	ENSPEMG00000029595 #32	Plekhm2 (ENSPEMG00000024198) #33	Slc25a34 (ENSPEMG00000009951) #34	Tmem82 (ENSPEMG00000021877) #35	Fblim1 (ENSPEMG00000022333) #36	Spen (ENSPEMG00000022997) #37
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	380	Fam151a (ENSDORG00000013808)	Acot11 (ENSDORG00000013806)	Ssbp3 (ENSDORG00000002296)	Mrpl37 (ENSDORG00000002294)	Cyb5rl (ENSDORG00000002291)	Cdcp2 (ENSDORG00000002289)	Tceanc2 (ENSDORG00000029310)	ENSDORG00000002286	Ldlrad1 (ENSDORG00000002283)	Lrrc42 (ENSDORG00000004216)	Hspb11 (ENSDORG00000015267)	Dio1 (ENSDORG00000015264)	Yipf1 (ENSDORG00000015262)	ENSDORG00000011209 #20	Prdm2 (ENSDORG00000012558) #21	ENSDORG00000016542 #22	ENSDORG00000023515 #22	Tmem51 (ENSDORG00000015453) #23	Fhad1 (ENSDORG00000005392) #24	Efhd2 (ENSDORG00000026861) #25	ENSDORG00000016574 #26	Cela2a (ENSDORG00000006593) #27	ENSDORG00000003973 #28	Dnajc16 (ENSDORG00000003972) #29	Agmat (ENSDORG00000003970) #30	ENSDORG00000012305 #31	ENSDORG00000027846 #32	Plekhm2 (ENSDORG00000008849) #33	Slc25a34 (ENSDORG00000008853) #34	Tmem82 (ENSDORG00000008854) #35	Fblim1 (ENSDORG00000002591) #36
Kangaroo rat	MODERN SPECIES	380	Acot11 (ENSDORG00000013806)	Ssbp3 (ENSDORG00000002296)	Mrpl37 (ENSDORG00000002294)	Cyb5rl (ENSDORG00000002291)	Cdcp2 (ENSDORG00000002289)	Tceanc2 (ENSDORG00000029310)	ENSDORG00000002286	Ldlrad1 (ENSDORG00000002283)	Lrrc42 (ENSDORG00000004216)	Hspb11 (ENSDORG00000015267)	Dio1 (ENSDORG00000015264)	Yipf1 (ENSDORG00000015262)	ENSDORG00000011209 #20	Prdm2 (ENSDORG00000012558) #21	ENSDORG00000016542 #22	ENSDORG00000023515 #22	Tmem51 (ENSDORG00000015453) #23	Fhad1 (ENSDORG00000005392) #24	Efhd2 (ENSDORG00000026861) #25	ENSDORG00000016574 #26	Cela2a (ENSDORG00000006593) #27	ENSDORG00000003973 #28	Dnajc16 (ENSDORG00000003972) #29	Agmat (ENSDORG00000003970) #30	ENSDORG00000012305 #31	ENSDORG00000027846 #32	Plekhm2 (ENSDORG00000008849) #33	Slc25a34 (ENSDORG00000008853) #34	Tmem82 (ENSDORG00000008854) #35	Fblim1 (ENSDORG00000002591) #36	Spen (ENSDORG00000023909) #37
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b #16	ENSGT01030000234531.A.b.b.b.f ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Sciuridae	ANCESTRAL SPECIES	3	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.f.b.b ##16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Marmotini	ANCESTRAL SPECIES		ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.c #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Marmotini_b	ANCESTRAL SPECIES		ENSGT00390000007643	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.c #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	74	NPPB (ENSSTOG00000020778)	KIAA2013 (ENSSTOG00000027586)	PLOD1 (ENSSTOG00000009927)	MFN2 (ENSSTOG00000005705)	MIIP (ENSSTOG00000024734)	TNFRSF1B (ENSSTOG00000024605) #7	VPS13D (ENSSTOG00000005519) #8	DHRS3 (ENSSTOG00000016015) #9	AADACL4 (ENSSTOG00000019534) #10	AADACL3 (ENSSTOG00000007059) #14	CFAP107 (ENSSTOG00000009816) #15	LRRC38 (ENSSTOG00000023111) #19	PDPN (ENSSTOG00000032629) #20	PRDM2 (ENSSTOG00000019848) #21	ENSSTOG00000023112 #22	ENSSTOG00000030433 #22	TMEM51 (ENSSTOG00000020167) #23	FHAD1 (ENSSTOG00000023646) #24	EFHD2 (ENSSTOG00000025403) #25	ENSSTOG00000032931 #26	ENSSTOG00000021532 #27	ENSSTOG00000028042 #28	DNAJC16 (ENSSTOG00000013804) #29	AGMAT (ENSSTOG00000013813) #30	DDI2 (ENSSTOG00000019447) #31	RSC1A1 (ENSSTOG00000025982) #32	PLEKHM2 (ENSSTOG00000013821) #33	SLC25A34 (ENSSTOG00000013833) #34	TMEM82 (ENSSTOG00000025954) #35	FBLIM1 (ENSSTOG00000028645) #36	ENSSTOG00000029207
Squirrel	MODERN SPECIES	74	ENSSTOG00000007663	NPPB (ENSSTOG00000020778)	KIAA2013 (ENSSTOG00000027586)	PLOD1 (ENSSTOG00000009927)	MFN2 (ENSSTOG00000005705)	MIIP (ENSSTOG00000024734)	TNFRSF1B (ENSSTOG00000024605) #7	VPS13D (ENSSTOG00000005519) #8	DHRS3 (ENSSTOG00000016015) #9	AADACL4 (ENSSTOG00000019534) #10	AADACL3 (ENSSTOG00000007059) #14	CFAP107 (ENSSTOG00000009816) #15	LRRC38 (ENSSTOG00000023111) #19	PDPN (ENSSTOG00000032629) #20	PRDM2 (ENSSTOG00000019848) #21	ENSSTOG00000023112 #22	ENSSTOG00000030433 #22	TMEM51 (ENSSTOG00000020167) #23	FHAD1 (ENSSTOG00000023646) #24	EFHD2 (ENSSTOG00000025403) #25	ENSSTOG00000032931 #26	ENSSTOG00000021532 #27	ENSSTOG00000028042 #28	DNAJC16 (ENSSTOG00000013804) #29	AGMAT (ENSSTOG00000013813) #30	DDI2 (ENSSTOG00000019447) #31	RSC1A1 (ENSSTOG00000025982) #32	PLEKHM2 (ENSSTOG00000013821) #33	SLC25A34 (ENSSTOG00000013833) #34	TMEM82 (ENSSTOG00000025954) #35	FBLIM1 (ENSSTOG00000028645) #36
Arctic ground squirrel	MODERN SPECIES	451												LRRC38 (ENSUPAG00010007763) #19	PDPN (ENSUPAG00010007766) #20	PRDM2 (ENSUPAG00010007769) #21	ENSUPAG00010007797 ##22	KAZN (ENSUPAG00010007804) #22	TMEM51 (ENSUPAG00010007834) #23	FHAD1 (ENSUPAG00010007841) #24	EFHD2 (ENSUPAG00010007892) #25
Alpin marmot	MODERN SPECIES	15													LRRC38 (ENSMMMG00000021887) #19	ENSMMMG00000021882 #20	PRDM2 (ENSMMMG00000021858) #21	KAZN (ENSMMMG00000021835) #22	TMEM51 (ENSMMMG00000021802) #23	FHAD1 (ENSMMMG00000021774) #24	EFHD2 (ENSMMMG00000021754) #25	ENSMMMG00000021744 #27	CASP9 (ENSMMMG00000021730)	DNAJC16 (ENSMMMG00000021719) #29	AGMAT (ENSMMMG00000021713) #30	DDI2 (ENSMMMG00000021707) #31	PLEKHM2 (ENSMMMG00000021689) #33	SLC25A34 (ENSMMMG00000021668) #34	TMEM82 (ENSMMMG00000021661) #35	FBLIM1 (ENSMMMG00000021649) #36	ENSMMMG00000021647	ZBTB17 (ENSMMMG00000021636)	SRARP (ENSMMMG00000021634)
Eurasian red squirrel	MODERN SPECIES		MFN2 (ENSSVLG00005006764)	MIIP (ENSSVLG00005006797)	TNFRSF8 (ENSSVLG00005006831)	ENSSVLG00005006934	TNFRSF1B (ENSSVLG00005006983) #7	VPS13D (ENSSVLG00005007158) #8	DHRS3 (ENSSVLG00005007738) #9	ENSSVLG00005007795 #10	ENSSVLG00005007846 #10	AADACL3 (ENSSVLG00005007922) #14	CFAP107 (ENSSVLG00005007956) #15	ENSSVLG00005008079 ##16	LRRC38 (ENSSVLG00005008488) #19	PDPN (ENSSVLG00005008527) #20	PRDM2 (ENSSVLG00005008674) #21	KAZN (ENSSVLG00005008929) #22	TMEM51 (ENSSVLG00005009207) #23	FHAD1 (ENSSVLG00005009255) #24	EFHD2 (ENSSVLG00005009504) #25	CTRC (ENSSVLG00005009531) #26	ENSSVLG00005009617 #27	ENSSVLG00005009810 #27	ENSSVLG00005009886 #28	DNAJC16 (ENSSVLG00005009925) #29	ENSSVLG00005009978	AGMAT (ENSSVLG00005010003) #30	DDI2 (ENSSVLG00005010074) #31	RSC1A1 (ENSSVLG00005010092) #32	PLEKHM2 (ENSSVLG00005010150) #33	SLC25A34 (ENSSVLG00005010194) #34	TMEM82 (ENSSVLG00005010237) #35
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.h #10	ENSGT00940000157630.g.a #10	ENSGT00940000157630.g.b #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.e.b.c #16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000170582	ENSGT00940000159410 #21	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000007958	TCEANC2 (ENSHGLG00000046573)	ENSHGLG00000043225	LRRC42 (ENSHGLG00000000742)	ENSHGLG00000001352	ENSHGLG00000040583	ENSHGLG00000042903	ENSHGLG00000046232	NDC1 (ENSHGLG00000001547)	ENSHGLG00000041952	LRP8 (ENSHGLG00000001818)	ENSHGLG00000001648	ENSHGLG00000002034	CPT2 (ENSHGLG00000003070)	ENSHGLG00000035804	ENSHGLG00000009940 #22	TMEM51 (ENSHGLG00000013366) #23	FHAD1 (ENSHGLG00000018196) #24	EFHD2 (ENSHGLG00000046486) #25	CTRC (ENSHGLG00000018486) #26	ENSHGLG00000016895 #27	CASP9 (ENSHGLG00000019310)	DNAJC16 (ENSHGLG00000014574) #29	AGMAT (ENSHGLG00000007473) #30	ENSHGLG00000038027 #32	PLEKHM2 (ENSHGLG00000007190) #33	SLC25A34 (ENSHGLG00000032560) #34	TMEM82 (ENSHGLG00000011424) #35	FBLIM1 (ENSHGLG00000019134) #36	ENSHGLG00000014407	SPEN (ENSHGLG00000032487) #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630.h #10	ENSGT00940000157630.g.a #10	ENSGT00940000157630.g.b #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT00940000162571 #19	ENSGT00940000170582	ENSGT00940000159410 #21	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	7													ENSGT00940000162571 #19	ENSGT00940000170582	ENSGT00940000159410 #21	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a #31	ENSGT00390000005744 #32	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	234													LRRC38 (ENSCLAG00000002559) #19	ENSCLAG00000002299	PRDM2 (ENSCLAG00000004362) #21	ENSCLAG00000003967 #22	ENSCLAG00000003684 #22	TMEM51 (ENSCLAG00000003533) #23	FHAD1 (ENSCLAG00000012202) #24	EFHD2 (ENSCLAG00000014606) #25	CTRC (ENSCLAG00000010834) #26	ENSCLAG00000010512 #27	CASP9 (ENSCLAG00000003082)	DNAJC16 (ENSCLAG00000002114) #29	AGMAT (ENSCLAG00000004055) #30	ENSCLAG00000003693 #32	PLEKHM2 (ENSCLAG00000003128) #33	SLC25A34 (ENSCLAG00000002647) #34	TMEM82 (ENSCLAG00000004347) #35	FBLIM1 (ENSCLAG00000003668) #36	SPEN (ENSCLAG00000002018) #37
Long-tailed chinchilla	MODERN SPECIES	234												LRRC38 (ENSCLAG00000002559) #19	ENSCLAG00000002299	PRDM2 (ENSCLAG00000004362) #21	ENSCLAG00000003967 #22	ENSCLAG00000003684 #22	TMEM51 (ENSCLAG00000003533) #23	FHAD1 (ENSCLAG00000012202) #24	EFHD2 (ENSCLAG00000014606) #25	CTRC (ENSCLAG00000010834) #26	ENSCLAG00000010512 #27	CASP9 (ENSCLAG00000003082)	DNAJC16 (ENSCLAG00000002114) #29	AGMAT (ENSCLAG00000004055) #30	ENSCLAG00000003693 #32	PLEKHM2 (ENSCLAG00000003128) #33	SLC25A34 (ENSCLAG00000002647) #34	TMEM82 (ENSCLAG00000004347) #35	FBLIM1 (ENSCLAG00000003668) #36	SPEN (ENSCLAG00000002018) #37	ZBTB17 (ENSCLAG00000006044)
Degu	DUPLICATION
Degu	MODERN SPECIES	133															PRDM2 (ENSODEG00000017400) #21	ENSODEG00000016425 #22	ENSODEG00000016473 #22	TMEM51 (ENSODEG00000016454) #23	FHAD1 (ENSODEG00000016605) #24	EFHD2 (ENSODEG00000016306) #25	CTRC (ENSODEG00000016340) #26	ENSODEG00000020480	ENSODEG00000016581 #27	ENSODEG00000016480 #28	DNAJC16 (ENSODEG00000016313) #29	AGMAT (ENSODEG00000016792) #30	DDI2 (ENSODEG00000016549) #31	RSC1A1 (ENSODEG00000016320) #32	PLEKHM2 (ENSODEG00000016981) #33	SLC25A34 (ENSODEG00000016800) #34	TMEM82 (ENSODEG00000016458) #35
Degu	MODERN SPECIES	133														PRDM2 (ENSODEG00000017400) #21	ENSODEG00000016425 #22	ENSODEG00000016473 #22	TMEM51 (ENSODEG00000016454) #23	FHAD1 (ENSODEG00000016605) #24	EFHD2 (ENSODEG00000016306) #25	CTRC (ENSODEG00000016340) #26	ENSODEG00000020480	ENSODEG00000016581 #27	ENSODEG00000016480 #28	DNAJC16 (ENSODEG00000016313) #29	AGMAT (ENSODEG00000016792) #30	DDI2 (ENSODEG00000016549) #31	RSC1A1 (ENSODEG00000016320) #32	PLEKHM2 (ENSODEG00000016981) #33	SLC25A34 (ENSODEG00000016800) #34	TMEM82 (ENSODEG00000016458) #35	FBLIM1 (ENSODEG00000016558) #36
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	25	PLOD1 (ENSCPOG00000020909)	MFN2 (ENSCPOG00000006834)	MIIP (ENSCPOG00000032652)	ENSCPOG00000009191	TNFRSF1B (ENSCPOG00000020299) #7	VPS13D (ENSCPOG00000010440) #8	DHRS3 (ENSCPOG00000001600) #9	ENSCPOG00000010237 #10	ENSCPOG00000015038 #10	ENSCPOG00000011374 #10	AADACL3 (ENSCPOG00000000228) #14	CFAP107 (ENSCPOG00000003643) #15	LRRC38 (ENSCPOG00000031681) #19	ENSCPOG00000038973	PRDM2 (ENSCPOG00000038436) #21	ENSCPOG00000007591 #22	ENSCPOG00000035462 #22	TMEM51 (ENSCPOG00000035704) #23	FHAD1 (ENSCPOG00000014449) #24	EFHD2 (ENSCPOG00000022076) #25	CTRC (ENSCPOG00000034507) #26	ENSCPOG00000039418 #27	ENSCPOG00000038747 #27	CASP9 (ENSCPOG00000012051)	DNAJC16 (ENSCPOG00000012059) #29	AGMAT (ENSCPOG00000026931) #30	DDI2 (ENSCPOG00000020885) #31	RSC1A1 (ENSCPOG00000012066) #32	PLEKHM2 (ENSCPOG00000012069) #33	SLC25A34 (ENSCPOG00000012078) #34	TMEM82 (ENSCPOG00000012084) #35
Guinea pig	MODERN SPECIES	25	MFN2 (ENSCPOG00000006834)	MIIP (ENSCPOG00000032652)	ENSCPOG00000009191	TNFRSF1B (ENSCPOG00000020299) #7	VPS13D (ENSCPOG00000010440) #8	DHRS3 (ENSCPOG00000001600) #9	ENSCPOG00000010237 #10	ENSCPOG00000015038 #10	ENSCPOG00000011374 #10	AADACL3 (ENSCPOG00000000228) #14	CFAP107 (ENSCPOG00000003643) #15	LRRC38 (ENSCPOG00000031681) #19	ENSCPOG00000038973	PRDM2 (ENSCPOG00000038436) #21	ENSCPOG00000007591 #22	ENSCPOG00000035462 #22	TMEM51 (ENSCPOG00000035704) #23	FHAD1 (ENSCPOG00000014449) #24	EFHD2 (ENSCPOG00000022076) #25	CTRC (ENSCPOG00000034507) #26	ENSCPOG00000039418 #27	ENSCPOG00000038747 #27	CASP9 (ENSCPOG00000012051)	DNAJC16 (ENSCPOG00000012059) #29	AGMAT (ENSCPOG00000026931) #30	DDI2 (ENSCPOG00000020885) #31	RSC1A1 (ENSCPOG00000012066) #32	PLEKHM2 (ENSCPOG00000012069) #33	SLC25A34 (ENSCPOG00000012078) #34	TMEM82 (ENSCPOG00000012084) #35	FBLIM1 (ENSCPOG00000024867) #36
Lagomorpha	ANCESTRAL SPECIES	140	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800 #7	ENSGT00950000183083.b #8	ENSGT00940000158724 #9	ENSGT00940000157630 #10	ENSGT00940000162160 #14	ENSGT00390000014553 #15	ENSGT01030000234531.A.b.b.b.c #16	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.b #22
Pika	MODERN SPECIES	4282																KAZN (ENSOPRG00000008867) #22	ENSOPRG00000008955
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	472	TNFRSF8 (ENSOCUG00000015925)	TNFRSF1B (ENSOCUG00000014127) #7	VPS13D (ENSOCUG00000005551) #8	ENSOCUG00000029199 #9	ENSOCUG00000003422 #10	ENSOCUG00000026490 #10	AADACL3 (ENSOCUG00000025025) #14	CFAP107 (ENSOCUG00000007517) #15	ENSOCUG00000008348 #16	LRRC38 (ENSOCUG00000010759) #19	PDPN (ENSOCUG00000005899) #20	ENSOCUG00000030212	PRDM2 (ENSOCUG00000009605) #21	ENSOCUG00000028991	ENSOCUG00000017106 #22	ENSOCUG00000033717 #22
Rabbit	MODERN SPECIES	472	ENSOCUG00000003525	TNFRSF8 (ENSOCUG00000015925)	TNFRSF1B (ENSOCUG00000014127) #7	VPS13D (ENSOCUG00000005551) #8	ENSOCUG00000029199 #9	ENSOCUG00000003422 #10	ENSOCUG00000026490 #10	AADACL3 (ENSOCUG00000025025) #14	CFAP107 (ENSOCUG00000007517) #15	ENSOCUG00000008348 #16	LRRC38 (ENSOCUG00000010759) #19	PDPN (ENSOCUG00000005899) #20	ENSOCUG00000030212	PRDM2 (ENSOCUG00000009605) #21	ENSOCUG00000028991	ENSOCUG00000017106 #22	ENSOCUG00000033717 #22