Mus	ANCESTRAL SPECIES	3	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.e.b ##7	ENSGT01030000234531.A.b.b.b.e.a.b.a #7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a #8	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a #15	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.a ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b #17	ENSGT01030000234531.A.b.b.b.e.a.b.b #18	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Shrew mouse	MODERN SPECIES	19	Pramel15 (MGP_PahariEiJ_G0029106) #7	MGP_PahariEiJ_G0029105 #8	MGP_PahariEiJ_G0029104 #9	MGP_PahariEiJ_G0029103 #10	MGP_PahariEiJ_G0029102 #11	MGP_PahariEiJ_G0029101 #12	MGP_PahariEiJ_G0029100 #13	MGP_PahariEiJ_G0029099 #14	MGP_PahariEiJ_G0029098 #15	MGP_PahariEiJ_G0029097 #16	Pramel12 (MGP_PahariEiJ_G0029096) #17	Pramel1 (MGP_PahariEiJ_G0029095) #18	Lrrc38 (MGP_PahariEiJ_G0029094) #19	Pdpn (MGP_PahariEiJ_G0029093) #20	Prdm2 (MGP_PahariEiJ_G0029092) #21	Kazn (MGP_PahariEiJ_G0029091) #22	Tmem51 (MGP_PahariEiJ_G0029090) #23	Fhad1 (MGP_PahariEiJ_G0029089) #24	Efhd2 (MGP_PahariEiJ_G0029088) #25	MGP_PahariEiJ_G0029087 #26	Cela2a (MGP_PahariEiJ_G0029086) #27	Casp9 (MGP_PahariEiJ_G0029085) #28	Dnajc16 (MGP_PahariEiJ_G0029084) #29	Agmat (MGP_PahariEiJ_G0029083) #30	MGP_PahariEiJ_G0029082 #31	MGP_PahariEiJ_G0029081 #32	Plekhm2 (MGP_PahariEiJ_G0029080) #33	Slc25a34 (MGP_PahariEiJ_G0029079) #34	Tmem82 (MGP_PahariEiJ_G0029078) #35	Fblim1 (MGP_PahariEiJ_G0029077) #36	Spen (MGP_PahariEiJ_G0029076) #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT01030000234531.A.b.b.b.e.b ##7	ENSGT01030000234531.A.b.b.b.e.a.b.a #7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a #8	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a #15	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.a ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b #17	ENSGT01030000234531.A.b.b.b.e.a.b.b #18	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.e.b ##7	ENSGT01030000234531.A.b.b.b.e.a.b.a #7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a.b #8	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a #15	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b #17	ENSGT01030000234531.A.b.b.b.e.a.b.b #18	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
Mus_C	ANCESTRAL SPECIES	2	ENSGT00860000136337	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.e.b ##7	ENSGT01030000234531.A.b.b.b.e.a.b.a #7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.a.b #8	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.a.a.a.b.a #15	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.b.a.a.b ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.a.a.b.a.a ##7	ENSGT01030000234531.A.b.b.b.e.a.a.a.b.b #17	ENSGT01030000234531.A.b.b.b.e.a.b.b #18	ENSGT00940000162571 #19	ENSGT00390000000013 #20	ENSGT00940000159410 #21	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #33	ENSGT00940000160016 #34	ENSGT00500000045021 #35	ENSGT00940000159003 #36	ENSGT00940000157087.a.b #37	ENSGT00940000159957
spretus	MODERN SPECIES	13	MGP_SPRETEiJ_G0027754 ##7	MGP_SPRETEiJ_G0027753 ##7	MGP_SPRETEiJ_G0027752 #8	MGP_SPRETEiJ_G0027751 #8	MGP_SPRETEiJ_G0027750 #8	MGP_SPRETEiJ_G0027749 #8	MGP_SPRETEiJ_G0027748 #8	MGP_SPRETEiJ_G0027747 #8	MGP_SPRETEiJ_G0027746 ##7	Oog4 (MGP_SPRETEiJ_G0027745) ##7	Pramel12 (MGP_SPRETEiJ_G0027744) #17	Pramel1 (MGP_SPRETEiJ_G0027743) #18	Lrrc38 (MGP_SPRETEiJ_G0027742) #19	Pdpn (MGP_SPRETEiJ_G0027741) #20	Prdm2 (MGP_SPRETEiJ_G0027740) #21	Kazn (MGP_SPRETEiJ_G0027739) #22	Tmem51 (MGP_SPRETEiJ_G0027738) #23	Fhad1 (MGP_SPRETEiJ_G0027737) #24	Efhd2 (MGP_SPRETEiJ_G0027736) #25	MGP_SPRETEiJ_G0027735 #26	Cela2a (MGP_SPRETEiJ_G0027734) #27	Casp9 (MGP_SPRETEiJ_G0027733) #28	Dnajc16 (MGP_SPRETEiJ_G0027732) #29	Agmat (MGP_SPRETEiJ_G0027731) #30	MGP_SPRETEiJ_G0027730 #31	MGP_SPRETEiJ_G0027729 #31	Plekhm2 (MGP_SPRETEiJ_G0027728) #33	Slc25a34 (MGP_SPRETEiJ_G0027727) #34	Tmem82 (MGP_SPRETEiJ_G0027726) #35	Fblim1 (MGP_SPRETEiJ_G0027725) #36	Spen (MGP_SPRETEiJ_G0027724) #37
Steppe mouse	MODERN SPECIES	3329							ENSMSIG00000015535 ##7	Oog4 (ENSMSIG00000015458) ##7	Pramel12 (ENSMSIG00000015426) #17	Pramel1 (ENSMSIG00000015411) #18	ENSMSIG00000015393 #19	Pdpn (ENSMSIG00000015317) #20	ENSMSIG00000015307	Prdm2 (ENSMSIG00000015257) #21	ENSMSIG00000015235 ##22	Kazn (ENSMSIG00000015206) #22	ENSMSIG00000015199	Tmem51 (ENSMSIG00000015190) #23	Fhad1 (ENSMSIG00000014775) #24	Efhd2 (ENSMSIG00000014750) #25	ENSMSIG00000014707	Cela2a (ENSMSIG00000014686) #27	Casp9 (ENSMSIG00000014653) #28	Dnajc16 (ENSMSIG00000014635) #29	Agmat (ENSMSIG00000014614) #30	ENSMSIG00000014561 #31	Plekhm2 (ENSMSIG00000014394) #33	Slc25a34 (ENSMSIG00000014377) #34	Tmem82 (ENSMSIG00000014350) #35	Fblim1 (ENSMSIG00000014313) #36	Spen (ENSMSIG00000014208) #37
Mouse	MODERN SPECIES	13	Pramel24 (ENSMUSG00000046435) ##7	Pramel23 (ENSMUSG00000070617) ##7	Pramel22 (ENSMUSG00000078513) ##7	Pramel21 (ENSMUSG00000066688) ##7	Pramel20 (ENSMUSG00000070618) #8	Gm13057 (ENSMUSG00000096154) #8	Gm13040 (ENSMUSG00000070616) #8	Gm13043 (ENSMUSG00000095409) #8	Oog4 (ENSMUSG00000047799) ##7	Pramel12 (ENSMUSG00000046862) #17	Pramel1 (ENSMUSG00000041805) #18	Lrrc38 (ENSMUSG00000028584) #19	Pdpn (ENSMUSG00000028583) #20	Prdm2 (ENSMUSG00000057637) #21	6330411D24Rik (ENSMUSG00000110067)	Kazn (ENSMUSG00000040606) #22	Tmem51 (ENSMUSG00000040616) #23	Fhad1 (ENSMUSG00000051435) #24	Efhd2 (ENSMUSG00000040659) #25	Ctrc (ENSMUSG00000062478) #26	Cela2a (ENSMUSG00000058579) #27	Casp9 (ENSMUSG00000028914) #28	Dnajc16 (ENSMUSG00000040697) #29	Agmat (ENSMUSG00000040706) #30	Rsc1a1 (ENSMUSG00000040715) #31	Ddi2 (ENSMUSG00000078515) #31	Plekhm2 (ENSMUSG00000028917) #33	Slc25a34 (ENSMUSG00000040740) #34	Tmem82 (ENSMUSG00000043085) #35	Fblim1 (ENSMUSG00000006219) #36	Spen (ENSMUSG00000040761) #37
Ryukyu mouse	MODERN SPECIES	13	Aadacl4fm2 (MGP_CAROLIEiJ_G0026774)	Aadacl4fm1 (MGP_CAROLIEiJ_G0026773)	Aadacl3 (MGP_CAROLIEiJ_G0026772)	MGP_CAROLIEiJ_G0026771	Cfap107 (MGP_CAROLIEiJ_G0026770)	Pramel13 (MGP_CAROLIEiJ_G0026769) ##7	MGP_CAROLIEiJ_G0026768 #15	MGP_CAROLIEiJ_G0026767 #15	MGP_CAROLIEiJ_G0026766 ##7	Oog4 (MGP_CAROLIEiJ_G0026765) ##7	Pramel12 (MGP_CAROLIEiJ_G0026764) #17	Pramel1 (MGP_CAROLIEiJ_G0026763) #18	Lrrc38 (MGP_CAROLIEiJ_G0026762) #19	Pdpn (MGP_CAROLIEiJ_G0026761) #20	Prdm2 (MGP_CAROLIEiJ_G0026760) #21	Kazn (MGP_CAROLIEiJ_G0026759) #22	Tmem51 (MGP_CAROLIEiJ_G0026758) #23	Fhad1 (MGP_CAROLIEiJ_G0026757) #24	Efhd2 (MGP_CAROLIEiJ_G0026756) #25	MGP_CAROLIEiJ_G0026755 #26	MGP_CAROLIEiJ_G0026754 #28	Dnajc16 (MGP_CAROLIEiJ_G0026753) #29	Agmat (MGP_CAROLIEiJ_G0026752) #30	MGP_CAROLIEiJ_G0026751 #31	MGP_CAROLIEiJ_G0026750 #31	Plekhm2 (MGP_CAROLIEiJ_G0026749) #33	Slc25a34 (MGP_CAROLIEiJ_G0026748) #34	Tmem82 (MGP_CAROLIEiJ_G0026747) #35	Fblim1 (MGP_CAROLIEiJ_G0026746) #36	Spen (MGP_CAROLIEiJ_G0026745) #37	Zbtb17 (MGP_CAROLIEiJ_G0026744)