Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000157630	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b #15	ENSGT01030000234531.A.b.b.b.i.a.a.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000158724	ENSGT00940000157630	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c #8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Pecora	ANCESTRAL SPECIES	22					ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.j ##8	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT00550000074794.k.b	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.j ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Bovidae	ANCESTRAL SPECIES	15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Bovinae	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Bos	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003.d #35	ENSGT00940000154141.B.t.b #36	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.b #37
Bos_a	ANCESTRAL SPECIES	8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003.d #35	ENSGT00940000154141.B.t.b #36	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.b #37
Domestic yak	MODERN SPECIES	5	ENSBGRG00000021633 #7	ENSBGRG00000021586 #8	ENSBGRG00000021556 #9	ENSBGRG00000021508 #10	ENSBGRG00000021485 #11	ENSBGRG00000021466 #12	ENSBGRG00000021449 #13	ENSBGRG00000021430 #14	ENSBGRG00000021379 #15	ENSBGRG00000021323 #16	ENSBGRG00000021291 #17	LRRC38 (ENSBGRG00000021255) #18	ENSBGRG00000021152 #19	PRDM2 (ENSBGRG00000020945) #20	ENSBGRG00000020912 #21	KAZN (ENSBGRG00000020603) #22	TMEM51 (ENSBGRG00000020549) #23	FHAD1 (ENSBGRG00000020058) #24	EFHD2 (ENSBGRG00000020005) #25	CTRC (ENSBGRG00000019947) #26	ENSBGRG00000019856 #27	CASP9 (ENSBGRG00000019581) #28	DNAJC16 (ENSBGRG00000019367) #29	AGMAT (ENSBGRG00000019283) #30	ENSBGRG00000019177 #31	PLEKHM2 (ENSBGRG00000019013) #32	SLC25A34 (ENSBGRG00000018908) #33	TMEM82 (ENSBGRG00000018870) #34	ENSBGRG00000018722 #35	ENSBGRG00000018679 #36	ENSBGRG00000018650 #37
Wild yak	MODERN SPECIES	185														ENSBMUG00000025697 #20	ENSBMUG00000025687	KAZN (ENSBMUG00000025682) #22	TMEM51 (ENSBMUG00000025671) #23	FHAD1 (ENSBMUG00000025658) #24	EFHD2 (ENSBMUG00000025629) #25	CTRC (ENSBMUG00000025619) #26	ENSBMUG00000025605 #27	CASP9 (ENSBMUG00000025595) #28	DNAJC16 (ENSBMUG00000025587) #29	AGMAT (ENSBMUG00000025575) #30	ENSBMUG00000025563 #31	PLEKHM2 (ENSBMUG00000025554) #32	SLC25A34 (ENSBMUG00000025524) #33	TMEM82 (ENSBMUG00000025518) #34	FBLIM1 (ENSBMUG00000025515) #35	SPEN (ENSBMUG00000025507)	ZBTB17 (ENSBMUG00000025489)
Bos_b	ANCESTRAL SPECIES	27	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.b #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.b.d.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.b #14	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.a #15	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a #10	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003.d #35	ENSGT00940000154141.B.t.b #36	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.b #37	ENSGT00940000157087.a.b
Cow	DUPLICATION
Cow	MODERN SPECIES	7	ENSBTAG00000050338 #10	ENSBTAG00000051639 #10	ENSBTAG00000054788 #10	ENSBTAG00000031507 #13	ENSBTAG00000053200 ##8	ENSBTAG00000054475 #14	ENSBTAG00000046630 #15	ENSBTAG00000051014 #10	ENSBTAG00000054147 ##8	ENSBTAG00000050422 #16	ENSBTAG00000024791 #17	LRRC38 (ENSBTAG00000017883) #18	PDPN (ENSBTAG00000001788) #19	PRDM2 (ENSBTAG00000020552) #20	ENSBTAG00000050764 ##22	ENSBTAG00000054228 #22	KAZN (ENSBTAG00000015606) #22	TMEM51 (ENSBTAG00000005300) #23	FHAD1 (ENSBTAG00000002408) #24	EFHD2 (ENSBTAG00000009048) #25	CTRC (ENSBTAG00000024497) #27	CELA2A (ENSBTAG00000024496) #27	CASP9 (ENSBTAG00000002472) #28	DNAJC16 (ENSBTAG00000002476) #29	AGMAT (ENSBTAG00000002478) #30	ENSBTAG00000039662 #31	PLEKHM2 (ENSBTAG00000018722) #32	SLC25A34 (ENSBTAG00000018723) #33	TMEM82 (ENSBTAG00000018724) #34	FBLIM1 (ENSBTAG00000018725) #35	SPEN (ENSBTAG00000018729)
Cow	MODERN SPECIES	7	ENSBTAG00000051639 #10	ENSBTAG00000054788 #10	ENSBTAG00000031507 #13	ENSBTAG00000053200 ##8	ENSBTAG00000054475 #14	ENSBTAG00000046630 #15	ENSBTAG00000051014 #10	ENSBTAG00000054147 ##8	ENSBTAG00000050422 #16	ENSBTAG00000024791 #17	LRRC38 (ENSBTAG00000017883) #18	PDPN (ENSBTAG00000001788) #19	PRDM2 (ENSBTAG00000020552) #20	ENSBTAG00000050764 ##22	ENSBTAG00000054228 #22	KAZN (ENSBTAG00000015606) #22	TMEM51 (ENSBTAG00000005300) #23	FHAD1 (ENSBTAG00000002408) #24	EFHD2 (ENSBTAG00000009048) #25	CTRC (ENSBTAG00000024497) #27	CELA2A (ENSBTAG00000024496) #27	CASP9 (ENSBTAG00000002472) #28	DNAJC16 (ENSBTAG00000002476) #29	AGMAT (ENSBTAG00000002478) #30	ENSBTAG00000039662 #31	PLEKHM2 (ENSBTAG00000018722) #32	SLC25A34 (ENSBTAG00000018723) #33	TMEM82 (ENSBTAG00000018724) #34	FBLIM1 (ENSBTAG00000018725) #35	SPEN (ENSBTAG00000018729)	ZBTB17 (ENSBTAG00000018730)
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005008982 ##8	ENSBIXG00005009342 ##8	ENSBIXG00005007254 ##8	ENSBIXG00005009912 #9	ENSBIXG00005006987 ##8	ENSBIXG00005010103 #13	ENSBIXG00005000864 #14	ENSBIXG00005000883 #15	ENSBIXG00005010457 ##8	ENSBIXG00005010530 #16	ENSBIXG00005006420 #17	LRRC38 (ENSBIXG00005000595) #18	ENSBIXG00005000979 #19	PRDM2 (ENSBIXG00005007097) #20	ENSBIXG00005005375	KAZN (ENSBIXG00005011261) #22	TMEM51 (ENSBIXG00005011327) #23	FHAD1 (ENSBIXG00005011647) #24	EFHD2 (ENSBIXG00005011720) #25	ENSBIXG00005011756 #27	ENSBIXG00005005955 #27	CASP9 (ENSBIXG00005005479) #28	DNAJC16 (ENSBIXG00005001178) #29	AGMAT (ENSBIXG00005000434) #30	ENSBIXG00005011928 #31	PLEKHM2 (ENSBIXG00005012000) #32	SLC25A34 (ENSBIXG00005012016) #33	TMEM82 (ENSBIXG00005012046) #34	FBLIM1 (ENSBIXG00005012085) #35	ENSBIXG00005012103 #36	ENSBIXG00005012123 #37
American bison	MODERN SPECIES	3204	ENSBBBG00000001187 ##8	ENSBBBG00000000878 ##8	ENSBBBG00000003594 ##8	ENSBBBG00000006952 #8	ENSBBBG00000003702 #9	ENSBBBG00000003719 #10	ENSBBBG00000015055 #13	ENSBBBG00000015074 #14	ENSBBBG00000015138 #15	ENSBBBG00000015151 ##8	ENSBBBG00000003551 #16	ENSBBBG00000015198 #17	LRRC38 (ENSBBBG00000015206) #18	ENSBBBG00000015215 #19	PRDM2 (ENSBBBG00000015229) #20	KAZN (ENSBBBG00000015286) #22	TMEM51 (ENSBBBG00000015300) #23	FHAD1 (ENSBBBG00000001305) #24	EFHD2 (ENSBBBG00000001289) #25	ENSBBBG00000001259 #27	ENSBBBG00000003506 #27	CASP9 (ENSBBBG00000003489) #28	DNAJC16 (ENSBBBG00000015369) #29	AGMAT (ENSBBBG00000015382) #30	DDI2 (ENSBBBG00000003839)	RSC1A1 (ENSBBBG00000015392) #31	PLEKHM2 (ENSBBBG00000003857) #32	SLC25A34 (ENSBBBG00000015510) #33	TMEM82 (ENSBBBG00000007137) #34	FBLIM1 (ENSBBBG00000015556) #35	ENSBBBG00000015562 #36
Caprinae	ANCESTRAL SPECIES	12	ENSGT01030000234531.A.b.b.b.i.a.a.a.b.a.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.b ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.b.a #8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.b #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.b.c.a.a.h #10	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.b.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.a.a.a.b #16	ENSGT01030000234531.A.b.b.b.i.a.a.b.b #17	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Rambouillet Sheep	MODERN SPECIES	3	ENSOARG00020010409 #10	ENSOARG00020010369 #10	ENSOARG00020010311 #15	ENSOARG00020010268 #10	ENSOARG00020009699 ##8	ENSOARG00020009442 #8	ENSOARG00020009412 #10	ENSOARG00020009341 #10	ENSOARG00020009285 ##8	ENSOARG00020009198 #16	ENSOARG00020020120 #17	LRRC38 (ENSOARG00020020097) #18	PDPN (ENSOARG00020020058) #19	PRDM2 (ENSOARG00020019392) #20	ENSOARG00020019315	KAZN (ENSOARG00020018607) #22	TMEM51 (ENSOARG00020018527) #23	FHAD1 (ENSOARG00020018014) #24	EFHD2 (ENSOARG00020017962) #25	CTRC (ENSOARG00020017905) #26	ENSOARG00020017822 #27	CASP9 (ENSOARG00020017778) #28	DNAJC16 (ENSOARG00020017433) #29	AGMAT (ENSOARG00020017341) #30	PLEKHM2 (ENSOARG00020016680) #32	SLC25A34 (ENSOARG00020016601) #33	TMEM82 (ENSOARG00020016514) #34	FBLIM1 (ENSOARG00020016382) #35	SPEN (ENSOARG00020016226)	ZBTB17 (ENSOARG00020015851)	SAMD11 (ENSOARG00020015279)
Goat	MODERN SPECIES	7	ENSCHIG00000016311	AADACL3 (ENSCHIG00000019769)	CFAP107 (ENSCHIG00000011019)	ENSCHIG00000020333 ##8	ENSCHIG00000014888 #10	ENSCHIG00000008224 #8	ENSCHIG00000020507 ##8	ENSCHIG00000014501 #13	ENSCHIG00000004814 #10	ENSCHIG00000014605 ##8	LRRC38 (ENSCHIG00000025277) #18	PDPN (ENSCHIG00000018527) #19	PRDM2 (ENSCHIG00000023399) #20	ENSCHIG00000010486 ##22	ENSCHIG00000006445	KAZN (ENSCHIG00000017691) #22	TMEM51 (ENSCHIG00000026268) #23	FHAD1 (ENSCHIG00000025559) #24	EFHD2 (ENSCHIG00000014798) #25	ENSCHIG00000024451 #27	ENSCHIG00000024541 #27	CASP9 (ENSCHIG00000011738) #28	DNAJC16 (ENSCHIG00000015911) #29	AGMAT (ENSCHIG00000026472) #30	DDI2 (ENSCHIG00000018822)	RSC1A1 (ENSCHIG00000007845) #31	PLEKHM2 (ENSCHIG00000024452) #32	SLC25A34 (ENSCHIG00000019912) #33	TMEM82 (ENSCHIG00000003584) #34	FBLIM1 (ENSCHIG00000017802) #35	ENSCHIG00000026022
Siberian musk deer	MODERN SPECIES	389	ENSMMSG00000022549 ##8	ENSMMSG00000022796 #13	ENSMMSG00000022826 ##8	ENSMMSG00000004665 #8	ENSMMSG00000005072 ##8	ENSMMSG00000005284 #10	ENSMMSG00000005419 #14	ENSMMSG00000005559 #13	ENSMMSG00000005659 #15	ENSMMSG00000005756 ##8	ENSMMSG00000005826 #16	ENSMMSG00000006132 #17	LRRC38 (ENSMMSG00000006158) #18	PDPN (ENSMMSG00000006182) #19	PRDM2 (ENSMMSG00000006211) #20	KAZN (ENSMMSG00000006323) #22	TMEM51 (ENSMMSG00000006826) #23	FHAD1 (ENSMMSG00000006911) #24	EFHD2 (ENSMMSG00000007253) #25	ENSMMSG00000007296 #27	ENSMMSG00000007363 #27	CASP9 (ENSMMSG00000007413) #28	DNAJC16 (ENSMMSG00000007464) #29	AGMAT (ENSMMSG00000007536) #30	ENSMMSG00000007570	RSC1A1 (ENSMMSG00000007605) #31	PLEKHM2 (ENSMMSG00000007626) #32	SLC25A34 (ENSMMSG00000007677) #33	TMEM82 (ENSMMSG00000007707) #34	FBLIM1 (ENSMMSG00000007749) #35	SPEN (ENSMMSG00000007827)
Yarkand deer	MODERN SPECIES	5	ENSCHYG00000025611 ##8	ENSCHYG00000025592	ENSCHYG00000025542 #9	ENSCHYG00000025520 ##8	ENSCHYG00000025494 #10	ENSCHYG00000025470 #13	ENSCHYG00000025459	ENSCHYG00000025443	ENSCHYG00000025290 #13	ENSCHYG00000025053 #14	ENSCHYG00000024944 #15	ENSCHYG00000024866 #17	LRRC38 (ENSCHYG00000024848) #18	PDPN (ENSCHYG00000024833) #19	PRDM2 (ENSCHYG00000024667) #20	KAZN (ENSCHYG00000024327) #22	TMEM51 (ENSCHYG00000024288) #23	FHAD1 (ENSCHYG00000024072) #24	ENSCHYG00000023937 #27	ENSCHYG00000023761 #27	CASP9 (ENSCHYG00000023723) #28	DNAJC16 (ENSCHYG00000023597) #29	AGMAT (ENSCHYG00000023518) #30	ENSCHYG00000023341 #31	PLEKHM2 (ENSCHYG00000023065) #32	ENSCHYG00000022975 #33	TMEM82 (ENSCHYG00000022909) #34	FBLIM1 (ENSCHYG00000022827) #35	SPEN (ENSCHYG00000022636)	ZBTB17 (ENSCHYG00000022216)	SAMD11 (ENSCHYG00000021909)
Cetacea	ANCESTRAL SPECIES		ENSGT00940000158724	ENSGT00940000157630	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.b.c #8	ENSGT01030000234531.A.b.b.b.i.a.a.a.b #15	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Blue whale	MODERN SPECIES		TNFRSF1B (ENSBMSG00010007324)	VPS13D (ENSBMSG00010007384)	DHRS3 (ENSBMSG00010007478)	AADACL4 (ENSBMSG00010007488)	CFAP107 (ENSBMSG00010007511)	ENSBMSG00010007532 #13	ENSBMSG00010007544 #8	ENSBMSG00010007602 #15	ENSBMSG00010007792 ##8	ENSBMSG00010007917 ##8	ENSBMSG00010007941 #9	ENSBMSG00010007958 #9	LRRC38 (ENSBMSG00010007987) #18	PDPN (ENSBMSG00010007995) #19	PRDM2 (ENSBMSG00010008032) #20	KAZN (ENSBMSG00010008100) #22	ENSBMSG00010008186	ENSBMSG00010008193	TMEM51 (ENSBMSG00010008196) #23	FHAD1 (ENSBMSG00010008207) #24	ENSBMSG00010008241	EFHD2 (ENSBMSG00010008253) #25	CTRC (ENSBMSG00010008262) #26	ENSBMSG00010008297 #27	CASP9 (ENSBMSG00010008360) #28	DNAJC16 (ENSBMSG00010008382) #29	AGMAT (ENSBMSG00010008410) #30	ENSBMSG00010008433 #31	PLEKHM2 (ENSBMSG00010008480) #32	SLC25A34 (ENSBMSG00010008526) #33	TMEM82 (ENSBMSG00010008539) #34
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000158724	ENSGT00940000157630	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.a.a.a.b #15	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.a #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Sperm whale	MODERN SPECIES	214																ENSPCTG00005014737 #22
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000157630	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.a #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.a #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Monodontidae	ANCESTRAL SPECIES		ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.a.b.d #13	ENSGT01030000234531.A.b.b.b.i.b ##8	ENSGT01030000234531.A.b.b.b.i.a.a.a.a ##8	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.a #9	ENSGT01030000234531.A.b.b.b.i.a.a.b.a.c.b #9	ENSGT00940000162571 #18	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00940000154570.a.b ##22	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Narwhal	MODERN SPECIES	304	TNFRSF1B (ENSMMNG00015006400)	VPS13D (ENSMMNG00015006173)	DHRS3 (ENSMMNG00015006042)	AADACL3 (ENSMMNG00015006022)	CFAP107 (ENSMMNG00015006001)	ENSMMNG00015005979 #13	ENSMMNG00015005966 ##8	ENSMMNG00015005942 ##8	ENSMMNG00015005928 #9	ENSMMNG00015005863 #9	LRRC38 (ENSMMNG00015005800) #18	PDPN (ENSMMNG00015005780) #19	ENSMMNG00015005757	PRDM2 (ENSMMNG00015005720) #20	ENSMMNG00015005668	KAZN (ENSMMNG00015005583) #22	TMEM51 (ENSMMNG00015005532) #23	FHAD1 (ENSMMNG00015005493) #24	EFHD2 (ENSMMNG00015005471) #25	CTRC (ENSMMNG00015005454) #26	ENSMMNG00015005395 #27	CASP9 (ENSMMNG00015005353) #28	DNAJC16 (ENSMMNG00015005297) #29	AGMAT (ENSMMNG00015005248) #30	DDI2 (ENSMMNG00015009565)	RSC1A1 (ENSMMNG00015009553) #31	PLEKHM2 (ENSMMNG00015009498) #32	SLC25A34 (ENSMMNG00015009466) #33	TMEM82 (ENSMMNG00015009449) #34	FBLIM1 (ENSMMNG00015009423) #35	SPEN (ENSMMNG00015009352)
Beluga whale	MODERN SPECIES	51	KIAA2013 (ENSDLEG00000017314)	PLOD1 (ENSDLEG00000017268)	MFN2 (ENSDLEG00000017211)	MIIP (ENSDLEG00000017173)	TNFRSF1B (ENSDLEG00000017139)	VPS13D (ENSDLEG00000015351)	DHRS3 (ENSDLEG00000015176)	CUNH1orf158 (ENSDLEG00000015158)	ENSDLEG00000015097 #13	ENSDLEG00000014811 ##8	ENSDLEG00000014598 ##8	LRRC38 (ENSDLEG00000014556) #18	PDPN (ENSDLEG00000014539) #19	PRDM2 (ENSDLEG00000014477) #20	ENSDLEG00000014459 ##22	KAZN (ENSDLEG00000014420) #22	TMEM51 (ENSDLEG00000014403) #23	FHAD1 (ENSDLEG00000014350) #24	EFHD2 (ENSDLEG00000014322) #25	CTRC (ENSDLEG00000014286) #26	ENSDLEG00000014265 #27	CASP9 (ENSDLEG00000014226) #28	DNAJC16 (ENSDLEG00000014190) #29	AGMAT (ENSDLEG00000014173) #30	ENSDLEG00000014150 #31	PLEKHM2 (ENSDLEG00000014078) #32	SLC25A34 (ENSDLEG00000014059) #33	TMEM82 (ENSDLEG00000014032) #34	FBLIM1 (ENSDLEG00000013991) #35	SPEN (ENSDLEG00000013956)	ZBTB17 (ENSDLEG00000013910)
Vaquita	MODERN SPECIES		MIIP (ENSPSNG00000012075)	TNFRSF8 (ENSPSNG00000012138)	TNFRSF1B (ENSPSNG00000012455)	VPS13D (ENSPSNG00000012531)	DHRS3 (ENSPSNG00000012639)	CFAP107 (ENSPSNG00000012671)	ENSPSNG00000012759 #13	ENSPSNG00000012912 ##8	ENSPSNG00000013025 ##8	ENSPSNG00000013486 #9	ENSPSNG00000013599 #9	LRRC38 (ENSPSNG00000014112) #18	PDPN (ENSPSNG00000014169) #19	ENSPSNG00000014314 #20	ENSPSNG00000014427	KAZN (ENSPSNG00000014520) #22	ENSPSNG00000015276	TMEM51 (ENSPSNG00000015327) #23	FHAD1 (ENSPSNG00000015379) #24	ENSPSNG00000015562	EFHD2 (ENSPSNG00000015611) #25	CTRC (ENSPSNG00000015637) #26	ENSPSNG00000015787 #27	CASP9 (ENSPSNG00000016214) #28	DNAJC16 (ENSPSNG00000016286) #29	AGMAT (ENSPSNG00000016383) #30	DDI2 (ENSPSNG00000016493)	RSC1A1 (ENSPSNG00000016538) #31	PLEKHM2 (ENSPSNG00000000003) #32	SLC25A34 (ENSPSNG00000000006) #33	TMEM82 (ENSPSNG00000000008) #34
Dolphin	MODERN SPECIES	2513																KAZN (ENSTTRG00000017165) #22	ENSTTRG00000017168
Camelidae	ANCESTRAL SPECIES	3	ENSGT01030000234558.A.a.a.b	ENSGT00390000013727.c	ENSGT00390000003768	ENSGT00510000049215	ENSGT00940000161800	ENSGT00950000183083.b	ENSGT00940000158724	ENSGT00940000162160	ENSGT00390000014553	ENSGT01030000234531.A.b.b.b.i.b.b ##8	ENSGT01030000234531.A.b.b.b.i.b.a ##8	ENSGT00940000163979	ENSGT00390000000013 #19	ENSGT00940000159410 #20	ENSGT00390000002770	ENSGT00940000154570.b #22	ENSGT00390000009278 #23	ENSGT00940000154171.A #24	ENSGT00390000012058.c.b #25	ENSGT00940000153216.a.b #26	ENSGT01030000234528.B.a.a #27	ENSGT00940000159698 #28	ENSGT00940000155851 #29	ENSGT00950000183195.a #30	ENSGT00950000182999.a.a	ENSGT00390000005744 #31	ENSGT00390000015175 #32	ENSGT00940000160016 #33	ENSGT00500000045021 #34	ENSGT00940000159003 #35	ENSGT00940000157087.a.b
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	4	PLOD1 (ENSCDRG00005017719)	MFN2 (ENSCDRG00005017822)	MIIP (ENSCDRG00005017918)	TNFRSF8 (ENSCDRG00005017963)	TNFRSF1B (ENSCDRG00005018060)	VPS13D (ENSCDRG00005018211)	DHRS3 (ENSCDRG00005018610)	AADACL3 (ENSCDRG00005018643)	CFAP107 (ENSCDRG00005018678)	ENSCDRG00005018739 ##8	ENSCDRG00005018920 ##8	ENSCDRG00005019181	PDPN (ENSCDRG00005019191) #19	PRDM2 (ENSCDRG00005019238) #20	ENSCDRG00005019343	ENSCDRG00005019377 #22	TMEM51 (ENSCDRG00005019540) #23	FHAD1 (ENSCDRG00005019578) #24	EFHD2 (ENSCDRG00005019753) #25	CTRC (ENSCDRG00005019769) #26	ENSCDRG00005019791 #27	CASP9 (ENSCDRG00005019814) #28	DNAJC16 (ENSCDRG00005019829) #29	AGMAT (ENSCDRG00005019855) #30	ENSCDRG00005019881 #31	PLEKHM2 (ENSCDRG00005019947) #32	SLC25A34 (ENSCDRG00005020338) #33	TMEM82 (ENSCDRG00005020345) #34	FBLIM1 (ENSCDRG00005003370) #35	SPEN (ENSCDRG00005003423)	ZBTB17 (ENSCDRG00005003563)
Arabian camel	MODERN SPECIES	21	NSMAF (ENSCDRG00005020419)	TOX (ENSCDRG00005020469)	CA8 (ENSCDRG00005020483)	RAB2A (ENSCDRG00005020500)	CHD7 (ENSCDRG00005020522)	CLVS1 (ENSCDRG00005020550)	ASPH (ENSCDRG00005020568)	NKAIN3 (ENSCDRG00005020651)	GGH (ENSCDRG00005020657)	TTPA (ENSCDRG00005020665)	ENSCDRG00005020671	YTHDF3 (ENSCDRG00005020678)	ENSCDRG00005020699	ENSCDRG00005020705	CYP7B1 (ENSCDRG00005020713)	ENSCDRG00005020716 #22	ARMC1 (ENSCDRG00005020720)	MTFR1 (ENSCDRG00005020730)	PDE7A (ENSCDRG00005020748)	DNAJC5B (ENSCDRG00005020764)	TRIM55 (ENSCDRG00005020793)	CRH (ENSCDRG00005020833)	RRS1 (ENSCDRG00005020834)	ADHFE1 (ENSCDRG00005020841)	VXN (ENSCDRG00005020864)	MYBL1 (ENSCDRG00005020892)	VCPIP1 (ENSCDRG00005020916)	SGK3 (ENSCDRG00005020926)	MCMDC2 (ENSCDRG00005020934)	TCF24 (ENSCDRG00005020969)	PPP1R42 (ENSCDRG00005020972)