Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00970000193381.a.a.a.a.b.b.a.b.f.a.a.a	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.c #35	ENSGT01040000240444.A.a.a.b
Orange clownfish	MODERN SPECIES	23	psmd2 (ENSAPEG00000001498)	prss16 (ENSAPEG00000001482) #7	serpine2 (ENSAPEG00000001453) #8	wdfy1 (ENSAPEG00000001381) #9	dhrs12la (ENSAPEG00000001325) #10	SCG2 (ENSAPEG00000001314) #12	AP1S3 (ENSAPEG00000001305) #11	kcne4 (ENSAPEG00000001287) #13	acsl3a (ENSAPEG00000001224) #14	farsb (ENSAPEG00000001153) #15	SGPP2 (ENSAPEG00000001108) #17	ENSAPEG00000001098 #18	pax3b (ENSAPEG00000001057) #19	epha4a (ENSAPEG00000000975) #20	pxylp1 (ENSAPEG00000000923) #21	SLC25A36 (ENSAPEG00000000858) #22	spsb4a (ENSAPEG00000000845) #23	ENSAPEG00000000779	CLSTN2 (ENSAPEG00000000726) #24	lpar5b (ENSAPEG00000000689) #25	rbp2a (ENSAPEG00000000675) #26	ENSAPEG00000000653 #27	COPB2 (ENSAPEG00000000555) #27	mrps22 (ENSAPEG00000000548) #28	PIK3CB (ENSAPEG00000000351) #29	PER2 (ENSAPEG00000000330) #30	her13 (ENSAPEG00000024634) #31	her8.2 (ENSAPEG00000024633) #32	ENSAPEG00000024631	ENSAPEG00000024629	ENSAPEG00000024627
Clown anemonefish	MODERN SPECIES	2165															pxylp1 (ENSAOCG00000000768) #21	SLC25A36 (ENSAOCG00000012499) #22	spsb4a (ENSAOCG00000012541) #23	SLC4A1AP (ENSAOCG00000012568)	supt7l (ENSAOCG00000012589)
Spiny chromis	MODERN SPECIES	407															pxylp1 (ENSAPOG00000020055) #21	SLC25A36 (ENSAPOG00000020029) #22	spsb4a (ENSAPOG00000019979) #23
Bicolor damselfish	MODERN SPECIES	1489															pxylp1 (ENSSPAG00000017892) #21	SLC25A36 (ENSSPAG00000017838) #22	spsb4a (ENSSPAG00000017828) #23
Cichlidae	ANCESTRAL SPECIES	33	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.b #35	ENSGT00950000183136.b.b.d.b #35	ENSGT00950000183136.b.b.d.a.a.a #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.b #35	ENSGT00950000183136.b.b.d.a.a.b.a #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.b #35	ENSGT00950000183136.b.b.d.a.a.b.a #35
Haplochromini	ANCESTRAL SPECIES	35	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT01100000263520.a.b.a.a.a.b.a.b.c.d.a.a.a	ENSGT00940000154907.a.a.x.b	ENSGT00970000193449	ENSGT00950000183014.f.a	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.a.a.b #35	ENSGT00950000183136.b.b.d.a.a.a.b #35
Burton s mouthbrooder	MODERN SPECIES	349							kcne4 (ENSHBUG00000022240) #13	ENSHBUG00000022286 #14	ENSHBUG00000022296 #16	farsb (ENSHBUG00000022379) #15	SGPP2 (ENSHBUG00000022394) #17	ENSHBUG00000022407 #18	pax3b (ENSHBUG00000022451) #19	epha4a (ENSHBUG00000022511) #20	pxylp1 (ENSHBUG00000022527) #21	SLC25A36 (ENSHBUG00000022561) #22	spsb4a (ENSHBUG00000022597) #23	ENSHBUG00000022617	CLSTN2 (ENSHBUG00000022673) #24	lpar5b (ENSHBUG00000022688) #25	rbp2a (ENSHBUG00000022702) #26	COPB2 (ENSHBUG00000022803) #27	mrps22 (ENSHBUG00000022826) #28	PIK3CB (ENSHBUG00000023142) #29	PER2 (ENSHBUG00000000709) #30	her13 (ENSHBUG00000023176) #31	her8.2 (ENSHBUG00000023184) #32	ENSHBUG00000023216 #33	ITM2C (ENSHBUG00000023261) #34	lpar5b (ENSHBUG00000023274) #35	lpar5b (ENSHBUG00000023292) #35
Haplochromini_A	ANCESTRAL SPECIES	40	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.a #35	ENSGT00950000183136.b.b.d.b #35
P. nyererei	MODERN SPECIES	378	wdfy1 (ENSPNYG00000011057) #9	dhrs12la (ENSPNYG00000011099) #10	AP1S3 (ENSPNYG00000011149) #11	ENSPNYG00000011372 #12	kcne4 (ENSPNYG00000011382) #13	acsl3a (ENSPNYG00000011402) #14	farsb (ENSPNYG00000011433) #15	ENSPNYG00000011468	ENSPNYG00000011481 #16	SGPP2 (ENSPNYG00000011492) #17	ENSPNYG00000011511 #18	pax3b (ENSPNYG00000011527) #19	ENSPNYG00000011554	epha4a (ENSPNYG00000011571) #20	pxylp1 (ENSPNYG00000011653) #21	SLC25A36 (ENSPNYG00000011731) #22	spsb4a (ENSPNYG00000011766) #23	CLSTN2 (ENSPNYG00000011806) #24	lpar5b (ENSPNYG00000011904) #25	rbp2a (ENSPNYG00000011924) #26	COPB2 (ENSPNYG00000011944) #27	mrps22 (ENSPNYG00000011985) #28	foxl2b (ENSPNYG00000012072)	PIK3CB (ENSPNYG00000012104) #29	PER2 (ENSPNYG00000012204) #30	her13 (ENSPNYG00000012240) #31	her8.2 (ENSPNYG00000012263) #32	ENSPNYG00000012316 #33	ITM2C (ENSPNYG00000012355) #34	lpar5b (ENSPNYG00000012388) #35
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00940000164087 #7	ENSGT00940000158424 #8	ENSGT00940000157731 #9	ENSGT00940000165979 #10	ENSGT00970000193372.b.a.b #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.a #35	ENSGT00950000183136.b.b.d.b.a.a #35
Eastern happy	MODERN SPECIES	5	dhrs12la (ENSACLG00000014210) #10	ENSACLG00000014191 #12	AP1S3 (ENSACLG00000014183) #11	kcne4 (ENSACLG00000014128) #13	acsl3a (ENSACLG00000014060) #14	ENSACLG00000014051 #16	farsb (ENSACLG00000013951) #15	SGPP2 (ENSACLG00000013928) #17	ENSACLG00000013923 #18	pax3b (ENSACLG00000013881) #19	ENSACLG00000013809	epha4a (ENSACLG00000013751) #20	ENSACLG00000013740	ENSACLG00000013580	pxylp1 (ENSACLG00000013559) #21	SLC25A36 (ENSACLG00000013526) #22	spsb4a (ENSACLG00000013515) #23	ENSACLG00000013213	ENSACLG00000013208	ENSACLG00000013193	CLSTN2 (ENSACLG00000013110) #24	lpar5b (ENSACLG00000012853) #25	rbp2a (ENSACLG00000012843) #26	COPB2 (ENSACLG00000012761) #27	mrps22 (ENSACLG00000012727) #28	PIK3CB (ENSACLG00000012502) #29	PER2 (ENSACLG00000012344) #30	her13 (ENSACLG00000012297) #31	her8.2 (ENSACLG00000012275) #32	ENSACLG00000012262 #33	ITM2C (ENSACLG00000012210) #34
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005004351	gemin4 (ENSMZEG00005004438)	TLCD3A (ENSMZEG00005004444)	usp2a (ENSMZEG00005004453)	TBCEL (ENSMZEG00005004478)	kcne4 (ENSMZEG00005004495) #13	ENSMZEG00005004509 #14	farsb (ENSMZEG00005004544) #15	ENSMZEG00005004588	ENSMZEG00005004594 #16	SGPP2 (ENSMZEG00005004600) #17	ENSMZEG00005004622 #18	pax3b (ENSMZEG00005004628) #19	epha4a (ENSMZEG00005004684) #20	pxylp1 (ENSMZEG00005004789) #21	SLC25A36 (ENSMZEG00005004803) #22	spsb4a (ENSMZEG00005004837) #23	ENSMZEG00005004855	CLSTN2 (ENSMZEG00005004867) #24	ENSMZEG00005004907 #25	rbp2a (ENSMZEG00005004916) #26	COPB2 (ENSMZEG00005004942) #27	mrps22 (ENSMZEG00005005002) #28	foxl2a (ENSMZEG00005005026)	nop53 (ENSMZEG00005005033)	ENSMZEG00005005051	ENSMZEG00005005059	psma6l (ENSMZEG00005005071)	ENSMZEG00005005107	sars2 (ENSMZEG00005005189)	si:dkey-260j18.2 (ENSMZEG00005005293)
Lyretail cichlid	MODERN SPECIES	367	prss16 (ENSNBRG00000003861) #7	serpine2 (ENSNBRG00000003846) #8	wdfy1 (ENSNBRG00000003804) #9	AP1S3 (ENSNBRG00000003658) #11	ENSNBRG00000003634 #12	kcne4 (ENSNBRG00000003631) #13	acsl3a (ENSNBRG00000003327) #14	ENSNBRG00000003270 #16	farsb (ENSNBRG00000003198) #15	SGPP2 (ENSNBRG00000003149) #17	ENSNBRG00000003132 #18	pax3b (ENSNBRG00000003096) #19	epha4a (ENSNBRG00000003033) #20	pxylp1 (ENSNBRG00000002984) #21	ENSNBRG00000002963	SLC25A36 (ENSNBRG00000002942) #22	CLSTN2 (ENSNBRG00000002891) #24	lpar5b (ENSNBRG00000002874) #25	rbp2a (ENSNBRG00000002854) #26	COPB2 (ENSNBRG00000002788) #27	mrps22 (ENSNBRG00000002593) #28	PIK3CB (ENSNBRG00000002386) #29	PER2 (ENSNBRG00000002361) #30	her13 (ENSNBRG00000002345) #31	her8.2 (ENSNBRG00000002319) #32	ENSNBRG00000002297 #33	ITM2C (ENSNBRG00000002259) #34	lpar5b (ENSNBRG00000002226) #35	lpar5b (ENSNBRG00000002212) #35	ENSNBRG00000002192 #36	meis3 (ENSNBRG00000002156) #37
Nile tilapia	MODERN SPECIES	5	psmd2 (ENSONIG00000010770)	prss16 (ENSONIG00000010768) #7	serpine2 (ENSONIG00000010765) #8	wdfy1 (ENSONIG00000014648) #9	dhrs12la (ENSONIG00000014649) #10	ENSONIG00000014647 #12	kcne4 (ENSONIG00000014646) #13	acsl3a (ENSONIG00000014644) #14	farsb (ENSONIG00000014639) #15	ENSONIG00000036757 #16	SGPP2 (ENSONIG00000014638) #17	ENSONIG00000037185 #18	pax3b (ENSONIG00000014632) #19	epha4a (ENSONIG00000014623) #20	pxylp1 (ENSONIG00000030369) #21	SLC25A36 (ENSONIG00000014617) #22	spsb4a (ENSONIG00000014616) #23	CLSTN2 (ENSONIG00000014608) #24	ENSONIG00000034460	lpar5b (ENSONIG00000020974) #25	rbp2a (ENSONIG00000014606) #26	COPB2 (ENSONIG00000014597) #27	mrps22 (ENSONIG00000014596) #28	ENSONIG00000033377	PIK3CB (ENSONIG00000007924) #29	PER2 (ENSONIG00000007937) #30	ENSONIG00000039254	her13 (ENSONIG00000035460) #31	her8.2 (ENSONIG00000007948) #32	ENSONIG00000007949 #33	ITM2C (ENSONIG00000007951) #34
Midas cichlid	MODERN SPECIES	1208															ENSACIG00000007678	SLC25A36 (ENSACIG00000007655) #22	spsb4a (ENSACIG00000007648) #23	CLSTN2 (ENSACIG00000007501) #24