Atherinomorphae ANCESTRAL SPECIES 15 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Oryzias ANCESTRAL SPECIES 8 ENSGT00950000183078.b.a.b ENSGT00950000182929.A #7 ENSGT00940000163374 #8 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00540000072704 #37 ENSGT00940000157083 ENSGT00390000014712.a.g.a ENSGT00940000157853.a Oryzias_a ANCESTRAL SPECIES 51 ENSGT00950000183078.b.a.b ENSGT00950000182929.A #7 ENSGT00940000163374 #8 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00540000072704 #37 ENSGT00940000157083 ENSGT00390000014712.a.g.a ENSGT00940000157853.a Japanese Medaka HdrR MODERN SPECIES 4 apoa1b (ENSORLG00000015744) #7 ENSORLG00000028989 #8 ENSORLG00000015728 #9 bace1 (ENSORLG00000025617) #10 pcsk7 (ENSORLG00000015722) #11 tagln (ENSORLG00000015714) #12 ENSORLG00000021874 #13 cbln20 (ENSORLG00000015708) #14 cbln20 (ENSORLG00000015707) #15 ENSORLG00000015701 #16 nudt8 (ENSORLG00000015682) #17 MFRP (ENSORLG00000015680) #18 ENSORLG00000015672 #19 pnkp (ENSORLG00000015667) #20 zgc:162193 (ENSORLG00000015653) #21 ENSORLG00000015639 #22 spsb4a (ENSORLG00000015620) #23 ENSORLG00000015614 #24 lpar5b (ENSORLG00000015601) #25 rbp2a (ENSORLG00000022031) #26 COPB2 (ENSORLG00000015574) #27 mrps22 (ENSORLG00000015543) #28 foxl2a (ENSORLG00000020203) #29 PIK3CB (ENSORLG00000015529) #30 her13 (ENSORLG00000015432) #31 PER2 (ENSORLG00000015456) #32 her8.2 (ENSORLG00000015428) #33 ENSORLG00000026928 #34 ENSORLG00000022288 #35 ENSORLG00000015424 #36 gkup (ENSORLG00000025988) #37 Chinese medaka MODERN SPECIES 1060 ENSOSIG00000003101 SIK3 (ENSOSIG00000003169) SIDT2 (ENSOSIG00000005029) ENSOSIG00000005248 pcsk7 (ENSOSIG00000005269) #11 ENSOSIG00000005840 #8 bace1 (ENSOSIG00000005850) #10 tagln (ENSOSIG00000005871) #12 ENSOSIG00000005876 #13 cbln20 (ENSOSIG00000005879) #14 cbln20 (ENSOSIG00000005881) #15 ENSOSIG00000005884 #16 nudt8 (ENSOSIG00000005885) #17 ENSOSIG00000005887 #18 zgc:162193 (ENSOSIG00000005890) #21 SLC25A36 (ENSOSIG00000005892) #22 spsb4a (ENSOSIG00000005910) #23 CLSTN2 (ENSOSIG00000005916) #24 Oryzias_b ANCESTRAL SPECIES 38 ENSGT00950000183078.b.a.b ENSGT00950000182929.A #7 ENSGT00940000163374 #8 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00540000072704 #37 ENSGT00940000157083 ENSGT00390000014712.a.g.a ENSGT00940000157853.a Indian medaka MODERN SPECIES 19 rps4x (ENSOMEG00000020132) cited1 (ENSOMEG00000020143) hdac8 (ENSOMEG00000020217) sycp3 (ENSOMEG00000020251) ENSOMEG00000020344 leap2 (ENSOMEG00000020370) ENSOMEG00000020380 ##13 ENSOMEG00000020389 ENSOMEG00000020407 ENSOMEG00000020415 ENSOMEG00000020449 hnrnpc (ENSOMEG00000020488) ndrg2 (ENSOMEG00000020643) ENSOMEG00000020724 ENSOMEG00000021257 SLC25A36 (ENSOMEG00000021336) #22 spsb4a (ENSOMEG00000021373) #23 ENSOMEG00000021411 znf219 (ENSOMEG00000021440) ENSOMEG00000021462 btr12 (ENSOMEG00000021478) ENSOMEG00000021652 ENSOMEG00000021736 ENSOMEG00000021768 ENSOMEG00000021780 ##13 ENSOMEG00000021794 ENSOMEG00000021810 ENSOMEG00000021820 ENSOMEG00000021859 ENSOMEG00000021875 ENSOMEG00000021881 Javanese ricefish MODERN SPECIES 4 SIK3 (ENSOJAG00000010711) SIDT2 (ENSOJAG00000010763) CEP164 (ENSOJAG00000011238) apoa1b (ENSOJAG00000011266) #7 ENSOJAG00000011303 #8 bace1 (ENSOJAG00000011345) #10 pcsk7 (ENSOJAG00000011470) #11 tagln (ENSOJAG00000012135) #12 ENSOJAG00000012154 #13 cbln20 (ENSOJAG00000012243) #15 ENSOJAG00000012260 #16 nudt8 (ENSOJAG00000012280) #17 ENSOJAG00000012290 #19 pnkp (ENSOJAG00000012584) #20 zgc:162193 (ENSOJAG00000013822) #21 SLC25A36 (ENSOJAG00000013846) #22 spsb4a (ENSOJAG00000013867) #23 CLSTN2 (ENSOJAG00000013906) #24 lpar5b (ENSOJAG00000014509) #25 ENSOJAG00000014518 rbp2a (ENSOJAG00000014549) #26 COPB2 (ENSOJAG00000014602) #27 mrps22 (ENSOJAG00000014852) #28 PIK3CB (ENSOJAG00000014934) #30 PER2 (ENSOJAG00000015635) #32 her13 (ENSOJAG00000016109) #31 her8.2 (ENSOJAG00000016131) #33 ENSOJAG00000016142 #36 usf1l (ENSOJAG00000016387) ENSOJAG00000016398 abcg4b (ENSOJAG00000016402) Cyprinodontiformes ANCESTRAL SPECIES 12 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Cyprinodontoidei ANCESTRAL SPECIES 9 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00390000004360.a.a #36 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Poeciliinae ANCESTRAL SPECIES 14 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00510000047299.d ENSGT00940000160721 Poecilia ANCESTRAL SPECIES 2 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00940000162996.y.a.a.c.a.a ENSGT00510000047299.d NAME_6 ANCESTRAL SPECIES 60 ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00940000162996.y.a.b.b.b ENSGT00940000162996.y.a.a.c.a.a Amazon molly MODERN SPECIES 325 pxylp1 (ENSPFOG00000008537) SLC25A36 (ENSPFOG00000008439) #22 spsb4a (ENSPFOG00000008391) #23 CLSTN2 (ENSPFOG00000007669) #24 lpar5b (ENSPFOG00000020309) #25 rbp2a (ENSPFOG00000007568) #26 ENSPFOG00000007552 COPB2 (ENSPFOG00000007284) #27 mrps22 (ENSPFOG00000007141) #28 foxl2b (ENSPFOG00000020308) #29 PIK3CB (ENSPFOG00000006566) #30 PER2 (ENSPFOG00000006138) #32 ENSPFOG00000006124 usp2a (ENSPFOG00000005925) tbcela (ENSPFOG00000005811) ENSPFOG00000022258 ENSPFOG00000004739 Sailfin molly MODERN SPECIES 695 pxylp1 (ENSPLAG00000008564) SLC25A36 (ENSPLAG00000008595) #22 spsb4a (ENSPLAG00000008604) #23 Guppy MODERN SPECIES 443 psmd2 (ENSPREG00000010322) serpine2 (ENSPREG00000010402) wdfy1 (ENSPREG00000010455) dhrs12la (ENSPREG00000010484) AP1S3 (ENSPREG00000010517) ENSPREG00000010524 kcne4 (ENSPREG00000010533) acsl3a (ENSPREG00000010542) farsb (ENSPREG00000010583) ENSPREG00000010621 SGPP2 (ENSPREG00000010631) ENSPREG00000010649 pax3b (ENSPREG00000010656) epha4a (ENSPREG00000010744) pxylp1 (ENSPREG00000010798) SLC25A36 (ENSPREG00000010816) #22 spsb4a (ENSPREG00000010844) #23 CLSTN2 (ENSPREG00000010875) #24 lpar5b (ENSPREG00000010933) #25 ENSPREG00000010948 rbp2a (ENSPREG00000010960) #26 ENSPREG00000010971 COPB2 (ENSPREG00000010996) #27 mrps22 (ENSPREG00000011070) #28 PIK3CB (ENSPREG00000011211) #30 PER2 (ENSPREG00000011271) #32 ENSPREG00000011295 usp2a (ENSPREG00000011319) tbcela (ENSPREG00000011348) ENSPREG00000011380 ENSPREG00000011466 Platyfish MODERN SPECIES 9 prss16 (ENSXMAG00000008194) serpine2 (ENSXMAG00000008196) wdfy1 (ENSXMAG00000008220) dhrs12la (ENSXMAG00000008246) ENSXMAG00000008263 AP1S3 (ENSXMAG00000008255) kcne4 (ENSXMAG00000008266) acsl3a (ENSXMAG00000008269) ENSXMAG00000029278 farsb (ENSXMAG00000008280) ENSXMAG00000021789 SGPP2 (ENSXMAG00000008302) pax3b (ENSXMAG00000008304) epha4a (ENSXMAG00000008306) pxylp1 (ENSXMAG00000008348) SLC25A36 (ENSXMAG00000008353) #22 spsb4a (ENSXMAG00000008361) #23 CLSTN2 (ENSXMAG00000008362) #24 lpar5b (ENSXMAG00000020218) #25 rbp2a (ENSXMAG00000006544) #26 COPB2 (ENSXMAG00000006552) #27 mrps22 (ENSXMAG00000006580) #28 ENSXMAG00000029209 foxl2b (ENSXMAG00000020219) #29 PIK3CB (ENSXMAG00000006594) #30 PER2 (ENSXMAG00000006651) #32 ENSXMAG00000006705 usp2a (ENSXMAG00000006708) tbcela (ENSXMAG00000006724) ENSXMAG00000006737 PGAP2 (ENSXMAG00000006831) NAME_4 ANCESTRAL SPECIES 102 ENSGT00940000153386.B ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 #29 ENSGT00940000157522 #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #33 ENSGT00940000163911.a.a.a.s ENSGT00940000163911.a.a.b.a.a.a.b.d.a.a Mummichog MODERN SPECIES 2202 prss16 (ENSFHEG00000021150) serpine2 (ENSFHEG00000021132) wdfy1 (ENSFHEG00000021120) dhrs12la (ENSFHEG00000021061) AP1S3 (ENSFHEG00000021028) ENSFHEG00000021018 kcne4 (ENSFHEG00000020998) acsl3a (ENSFHEG00000020987) farsb (ENSFHEG00000020939) ENSFHEG00000020916 SGPP2 (ENSFHEG00000020896) ENSFHEG00000020864 pax3b (ENSFHEG00000020858) epha4a (ENSFHEG00000020823) pxylp1 (ENSFHEG00000020749) SLC25A36 (ENSFHEG00000020736) #22 spsb4a (ENSFHEG00000020702) #23 CLSTN2 (ENSFHEG00000020690) #24 lpar5b (ENSFHEG00000020648) #25 rbp2a (ENSFHEG00000020640) #26 ENSFHEG00000020604 #27 COPB2 (ENSFHEG00000020594) #27 mrps22 (ENSFHEG00000020557) #28 foxl2b (ENSFHEG00000020548) #29 ENSFHEG00000020532 PIK3CB (ENSFHEG00000020512) #30 PER2 (ENSFHEG00000020488) #32 ENSFHEG00000020468 Sheepshead minnow MODERN SPECIES 73 SLC25A36 (ENSCVAG00000021401) #22 Aplocheiloidei ANCESTRAL SPECIES 246 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00390000006095 #28 ENSGT00940000157522.b #30 ENSGT00940000156342.d #32 ENSGT00940000161398.e #31 Mangrove rivulus MODERN SPECIES 62 ENSKMAG00000003188 lhx1a (ENSKMAG00000003163) bcas3 (ENSKMAG00000003039) tbx2b (ENSKMAG00000002976) tbx4 (ENSKMAG00000002942) brip1 (ENSKMAG00000002856) PPM1D (ENSKMAG00000002841) appbp2 (ENSKMAG00000002779) ENSKMAG00000002765 USP6 (ENSKMAG00000002625) ENSKMAG00000002543 tmem97 (ENSKMAG00000002514) ULK2 (ENSKMAG00000002479) aldh3a2a (ENSKMAG00000002434) ENSKMAG00000002417 SLC25A36 (ENSKMAG00000002380) #22 spsb4a (ENSKMAG00000002358) #23 ENSKMAG00000002334 CLSTN2 (ENSKMAG00000002240) #24 lpar5b (ENSKMAG00000002207) #25 rbp2a (ENSKMAG00000002179) #26 mrps22 (ENSKMAG00000002163) #28 foxl2b (ENSKMAG00000002135) #29 PIK3CB (ENSKMAG00000002028) #30 PER2 (ENSKMAG00000001995) #32 her13 (ENSKMAG00000001975) #31 Turquoise killifish MODERN SPECIES 1085 SLC25A36 (ENSNFUG00015018450) #22