Ovalentaria ANCESTRAL SPECIES 8 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Atherinomorphae ANCESTRAL SPECIES 15 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Oryzias ANCESTRAL SPECIES 8 ENSGT00950000183078.b.a.b #7 ENSGT00950000182929.A #8 ENSGT00940000163374 #9 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00540000072704 #34 ENSGT00940000157083 #35 ENSGT00390000014712.a.g.a #36 ENSGT00940000157853.a #37 Oryzias_a ANCESTRAL SPECIES 51 ENSGT00950000183078.b.a.b #7 ENSGT00950000182929.A #8 ENSGT00940000163374 #9 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00540000072704 #34 ENSGT00940000157083 #35 ENSGT00390000014712.a.g.a #36 ENSGT00940000157853.a #37 Japanese Medaka HdrR MODERN SPECIES 4 apoa1b (ENSORLG00000015744) #8 ENSORLG00000028989 #9 ENSORLG00000015728 bace1 (ENSORLG00000025617) #10 pcsk7 (ENSORLG00000015722) #11 tagln (ENSORLG00000015714) #12 ENSORLG00000021874 #13 cbln20 (ENSORLG00000015708) #14 cbln20 (ENSORLG00000015707) #15 ENSORLG00000015701 #16 nudt8 (ENSORLG00000015682) #17 MFRP (ENSORLG00000015680) #18 ENSORLG00000015672 #19 pnkp (ENSORLG00000015667) #20 zgc:162193 (ENSORLG00000015653) #21 ENSORLG00000015639 #22 spsb4a (ENSORLG00000015620) #23 ENSORLG00000015614 #24 lpar5b (ENSORLG00000015601) #25 rbp2a (ENSORLG00000022031) #26 COPB2 (ENSORLG00000015574) #27 mrps22 (ENSORLG00000015543) #28 foxl2a (ENSORLG00000020203) PIK3CB (ENSORLG00000015529) #29 her13 (ENSORLG00000015432) #31 PER2 (ENSORLG00000015456) #30 her8.2 (ENSORLG00000015428) #32 ENSORLG00000026928 ENSORLG00000022288 ENSORLG00000015424 #33 gkup (ENSORLG00000025988) #34 Chinese medaka MODERN SPECIES 1060 ENSOSIG00000003101 SIK3 (ENSOSIG00000003169) SIDT2 (ENSOSIG00000005029) ENSOSIG00000005248 #7 pcsk7 (ENSOSIG00000005269) #11 ENSOSIG00000005840 #9 bace1 (ENSOSIG00000005850) #10 tagln (ENSOSIG00000005871) #12 ENSOSIG00000005876 #13 cbln20 (ENSOSIG00000005879) #14 cbln20 (ENSOSIG00000005881) #15 ENSOSIG00000005884 #16 nudt8 (ENSOSIG00000005885) #17 ENSOSIG00000005887 #18 zgc:162193 (ENSOSIG00000005890) #21 SLC25A36 (ENSOSIG00000005892) #22 spsb4a (ENSOSIG00000005910) #23 CLSTN2 (ENSOSIG00000005916) #24 Oryzias_b ANCESTRAL SPECIES 38 ENSGT00950000183078.b.a.b #7 ENSGT00950000182929.A #8 ENSGT00940000163374 #9 ENSGT00940000157786 #10 ENSGT00940000157676 #11 ENSGT00940000155162.o.b #12 ENSGT00940000163520.B.g #13 ENSGT00940000163520.A.b.b.b.b #14 ENSGT00940000163520.A.b.b.a #15 ENSGT00940000162978.a.b #16 ENSGT00940000162775 #17 ENSGT00940000154525.b.b #18 ENSGT00940000165141.a #19 ENSGT00940000159302 #20 ENSGT00390000017365.b #21 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00540000072704 #34 ENSGT00940000157083 #35 ENSGT00390000014712.a.g.a #36 ENSGT00940000157853.a #37 Indian medaka MODERN SPECIES 19 rps4x (ENSOMEG00000020132) cited1 (ENSOMEG00000020143) hdac8 (ENSOMEG00000020217) sycp3 (ENSOMEG00000020251) ENSOMEG00000020344 leap2 (ENSOMEG00000020370) ENSOMEG00000020380 ##13 ENSOMEG00000020389 ENSOMEG00000020407 ENSOMEG00000020415 ENSOMEG00000020449 hnrnpc (ENSOMEG00000020488) ndrg2 (ENSOMEG00000020643) ENSOMEG00000020724 ENSOMEG00000021257 SLC25A36 (ENSOMEG00000021336) #22 spsb4a (ENSOMEG00000021373) #23 ENSOMEG00000021411 znf219 (ENSOMEG00000021440) ENSOMEG00000021462 btr12 (ENSOMEG00000021478) ENSOMEG00000021652 ENSOMEG00000021736 ENSOMEG00000021768 ENSOMEG00000021780 ##13 ENSOMEG00000021794 ENSOMEG00000021810 ENSOMEG00000021820 ENSOMEG00000021859 ENSOMEG00000021875 ENSOMEG00000021881 Javanese ricefish MODERN SPECIES 4 SIK3 (ENSOJAG00000010711) SIDT2 (ENSOJAG00000010763) CEP164 (ENSOJAG00000011238) #7 apoa1b (ENSOJAG00000011266) #8 ENSOJAG00000011303 #9 bace1 (ENSOJAG00000011345) #10 pcsk7 (ENSOJAG00000011470) #11 tagln (ENSOJAG00000012135) #12 ENSOJAG00000012154 #13 cbln20 (ENSOJAG00000012243) #15 ENSOJAG00000012260 #16 nudt8 (ENSOJAG00000012280) #17 ENSOJAG00000012290 #19 pnkp (ENSOJAG00000012584) #20 zgc:162193 (ENSOJAG00000013822) #21 SLC25A36 (ENSOJAG00000013846) #22 spsb4a (ENSOJAG00000013867) #23 CLSTN2 (ENSOJAG00000013906) #24 lpar5b (ENSOJAG00000014509) #25 ENSOJAG00000014518 rbp2a (ENSOJAG00000014549) #26 COPB2 (ENSOJAG00000014602) #27 mrps22 (ENSOJAG00000014852) #28 PIK3CB (ENSOJAG00000014934) #29 PER2 (ENSOJAG00000015635) #30 her13 (ENSOJAG00000016109) #31 her8.2 (ENSOJAG00000016131) #32 ENSOJAG00000016142 #33 usf1l (ENSOJAG00000016387) #35 ENSOJAG00000016398 #36 abcg4b (ENSOJAG00000016402) #37 Cyprinodontiformes ANCESTRAL SPECIES 12 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Cyprinodontoidei ANCESTRAL SPECIES 9 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 Poeciliinae ANCESTRAL SPECIES 14 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00510000047299.d ENSGT00940000160721 Poecilia ANCESTRAL SPECIES 2 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00940000162996.y.a.a.c.a.a ENSGT00510000047299.d NAME_6 ANCESTRAL SPECIES 60 ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000162556.C.c ENSGT00940000161289 ENSGT00530000063405.b.e ENSGT00940000162996.y.a.b.a ENSGT00940000162996.y.a.b.b.b ENSGT00940000162996.y.a.a.c.a.a Amazon molly MODERN SPECIES 325 pxylp1 (ENSPFOG00000008537) SLC25A36 (ENSPFOG00000008439) #22 spsb4a (ENSPFOG00000008391) #23 CLSTN2 (ENSPFOG00000007669) #24 lpar5b (ENSPFOG00000020309) #25 rbp2a (ENSPFOG00000007568) #26 ENSPFOG00000007552 COPB2 (ENSPFOG00000007284) #27 mrps22 (ENSPFOG00000007141) #28 foxl2b (ENSPFOG00000020308) PIK3CB (ENSPFOG00000006566) #29 PER2 (ENSPFOG00000006138) #30 ENSPFOG00000006124 usp2a (ENSPFOG00000005925) tbcela (ENSPFOG00000005811) ENSPFOG00000022258 ENSPFOG00000004739 Sailfin molly MODERN SPECIES 695 pxylp1 (ENSPLAG00000008564) SLC25A36 (ENSPLAG00000008595) #22 spsb4a (ENSPLAG00000008604) #23 Guppy MODERN SPECIES 443 psmd2 (ENSPREG00000010322) serpine2 (ENSPREG00000010402) wdfy1 (ENSPREG00000010455) dhrs12la (ENSPREG00000010484) AP1S3 (ENSPREG00000010517) ENSPREG00000010524 kcne4 (ENSPREG00000010533) acsl3a (ENSPREG00000010542) farsb (ENSPREG00000010583) ENSPREG00000010621 SGPP2 (ENSPREG00000010631) ENSPREG00000010649 pax3b (ENSPREG00000010656) epha4a (ENSPREG00000010744) pxylp1 (ENSPREG00000010798) SLC25A36 (ENSPREG00000010816) #22 spsb4a (ENSPREG00000010844) #23 CLSTN2 (ENSPREG00000010875) #24 lpar5b (ENSPREG00000010933) #25 ENSPREG00000010948 rbp2a (ENSPREG00000010960) #26 ENSPREG00000010971 COPB2 (ENSPREG00000010996) #27 mrps22 (ENSPREG00000011070) #28 PIK3CB (ENSPREG00000011211) #29 PER2 (ENSPREG00000011271) #30 ENSPREG00000011295 usp2a (ENSPREG00000011319) tbcela (ENSPREG00000011348) ENSPREG00000011380 ENSPREG00000011466 Platyfish MODERN SPECIES 9 prss16 (ENSXMAG00000008194) serpine2 (ENSXMAG00000008196) wdfy1 (ENSXMAG00000008220) dhrs12la (ENSXMAG00000008246) ENSXMAG00000008263 AP1S3 (ENSXMAG00000008255) kcne4 (ENSXMAG00000008266) acsl3a (ENSXMAG00000008269) ENSXMAG00000029278 farsb (ENSXMAG00000008280) ENSXMAG00000021789 SGPP2 (ENSXMAG00000008302) pax3b (ENSXMAG00000008304) epha4a (ENSXMAG00000008306) pxylp1 (ENSXMAG00000008348) SLC25A36 (ENSXMAG00000008353) #22 spsb4a (ENSXMAG00000008361) #23 CLSTN2 (ENSXMAG00000008362) #24 lpar5b (ENSXMAG00000020218) #25 rbp2a (ENSXMAG00000006544) #26 COPB2 (ENSXMAG00000006552) #27 mrps22 (ENSXMAG00000006580) #28 ENSXMAG00000029209 foxl2b (ENSXMAG00000020219) PIK3CB (ENSXMAG00000006594) #29 PER2 (ENSXMAG00000006651) #30 ENSXMAG00000006705 usp2a (ENSXMAG00000006708) tbcela (ENSXMAG00000006724) ENSXMAG00000006737 PGAP2 (ENSXMAG00000006831) NAME_4 ANCESTRAL SPECIES 102 ENSGT00940000153386.B ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000162075 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00940000163911.a.a.a.s ENSGT00940000163911.a.a.b.a.a.a.b.d.a.a Mummichog MODERN SPECIES 2202 prss16 (ENSFHEG00000021150) serpine2 (ENSFHEG00000021132) wdfy1 (ENSFHEG00000021120) dhrs12la (ENSFHEG00000021061) AP1S3 (ENSFHEG00000021028) ENSFHEG00000021018 kcne4 (ENSFHEG00000020998) acsl3a (ENSFHEG00000020987) farsb (ENSFHEG00000020939) ENSFHEG00000020916 SGPP2 (ENSFHEG00000020896) ENSFHEG00000020864 pax3b (ENSFHEG00000020858) epha4a (ENSFHEG00000020823) pxylp1 (ENSFHEG00000020749) SLC25A36 (ENSFHEG00000020736) #22 spsb4a (ENSFHEG00000020702) #23 CLSTN2 (ENSFHEG00000020690) #24 lpar5b (ENSFHEG00000020648) #25 rbp2a (ENSFHEG00000020640) #26 ENSFHEG00000020604 #27 COPB2 (ENSFHEG00000020594) #27 mrps22 (ENSFHEG00000020557) #28 foxl2b (ENSFHEG00000020548) ENSFHEG00000020532 PIK3CB (ENSFHEG00000020512) #29 PER2 (ENSFHEG00000020488) #30 ENSFHEG00000020468 Sheepshead minnow MODERN SPECIES 73 SLC25A36 (ENSCVAG00000021401) #22 Aplocheiloidei ANCESTRAL SPECIES 246 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00390000006095 #28 ENSGT00940000157522.b #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 Mangrove rivulus MODERN SPECIES 62 ENSKMAG00000003188 lhx1a (ENSKMAG00000003163) bcas3 (ENSKMAG00000003039) tbx2b (ENSKMAG00000002976) tbx4 (ENSKMAG00000002942) brip1 (ENSKMAG00000002856) PPM1D (ENSKMAG00000002841) appbp2 (ENSKMAG00000002779) ENSKMAG00000002765 USP6 (ENSKMAG00000002625) ENSKMAG00000002543 tmem97 (ENSKMAG00000002514) ULK2 (ENSKMAG00000002479) aldh3a2a (ENSKMAG00000002434) ENSKMAG00000002417 SLC25A36 (ENSKMAG00000002380) #22 spsb4a (ENSKMAG00000002358) #23 ENSKMAG00000002334 CLSTN2 (ENSKMAG00000002240) #24 lpar5b (ENSKMAG00000002207) #25 rbp2a (ENSKMAG00000002179) #26 mrps22 (ENSKMAG00000002163) #28 foxl2b (ENSKMAG00000002135) PIK3CB (ENSKMAG00000002028) #29 PER2 (ENSKMAG00000001995) #30 her13 (ENSKMAG00000001975) #31 Turquoise killifish MODERN SPECIES 1085 SLC25A36 (ENSNFUG00015018450) #22 Ovalentaria_B ANCESTRAL SPECIES 11 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 ENSGT00940000161057 Cichlidae ANCESTRAL SPECIES 33 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00950000183014.f.a ENSGT00970000193449 ENSGT00940000162403 ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.b ##25 ENSGT00950000183136.b.b.d.b ##25 ENSGT00950000183136.b.b.d.a.a.a ##25 Pseudocrenilabrinae ANCESTRAL SPECIES 22 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00950000183014.f.a ENSGT00970000193449 ENSGT00940000162403 ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a ##25 ENSGT00950000183136.b.b.d.a.a.b.b ##25 ENSGT00950000183136.b.b.d.a.a.b.a ##25 Pseudocrenilabrinae_A ANCESTRAL SPECIES 25 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00950000183014.f.a ENSGT00970000193449 ENSGT00940000162403 ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a ##25 ENSGT00950000183136.b.b.d.a.a.b.b ##25 ENSGT00950000183136.b.b.d.a.a.b.a ##25 Haplochromini ANCESTRAL SPECIES 35 ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT01100000263520.a.b.a.a.a.b.a.b.c.d.a.a.a ENSGT00940000154907.a.a.x.b ENSGT00970000193449 ENSGT00950000183014.f.a ENSGT00940000162403 ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a.a.a ##25 ENSGT00950000183136.b.b.d.a.a.a.a.b ##25 ENSGT00950000183136.b.b.d.a.a.a.b ##25 Burton s mouthbrooder MODERN SPECIES 349 kcne4 (ENSHBUG00000022240) ENSHBUG00000022286 ENSHBUG00000022296 farsb (ENSHBUG00000022379) SGPP2 (ENSHBUG00000022394) ENSHBUG00000022407 pax3b (ENSHBUG00000022451) epha4a (ENSHBUG00000022511) pxylp1 (ENSHBUG00000022527) SLC25A36 (ENSHBUG00000022561) #22 spsb4a (ENSHBUG00000022597) #23 ENSHBUG00000022617 CLSTN2 (ENSHBUG00000022673) #24 lpar5b (ENSHBUG00000022688) #25 rbp2a (ENSHBUG00000022702) #26 COPB2 (ENSHBUG00000022803) #27 mrps22 (ENSHBUG00000022826) #28 PIK3CB (ENSHBUG00000023142) #29 PER2 (ENSHBUG00000000709) #30 her13 (ENSHBUG00000023176) #31 her8.2 (ENSHBUG00000023184) #32 ENSHBUG00000023216 #33 ITM2C (ENSHBUG00000023261) lpar5b (ENSHBUG00000023274) ##25 lpar5b (ENSHBUG00000023292) ##25 Haplochromini_A ANCESTRAL SPECIES 40 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a.a.a ##25 ENSGT00950000183136.b.b.d.a.a.b.a ##25 ENSGT00950000183136.b.b.d.b ##25 P. nyererei MODERN SPECIES 378 wdfy1 (ENSPNYG00000011057) dhrs12la (ENSPNYG00000011099) AP1S3 (ENSPNYG00000011149) ENSPNYG00000011372 kcne4 (ENSPNYG00000011382) acsl3a (ENSPNYG00000011402) farsb (ENSPNYG00000011433) ENSPNYG00000011468 ENSPNYG00000011481 SGPP2 (ENSPNYG00000011492) ENSPNYG00000011511 pax3b (ENSPNYG00000011527) ENSPNYG00000011554 epha4a (ENSPNYG00000011571) pxylp1 (ENSPNYG00000011653) SLC25A36 (ENSPNYG00000011731) #22 spsb4a (ENSPNYG00000011766) #23 CLSTN2 (ENSPNYG00000011806) #24 lpar5b (ENSPNYG00000011904) #25 rbp2a (ENSPNYG00000011924) #26 COPB2 (ENSPNYG00000011944) #27 mrps22 (ENSPNYG00000011985) #28 foxl2b (ENSPNYG00000012072) PIK3CB (ENSPNYG00000012104) #29 PER2 (ENSPNYG00000012204) #30 her13 (ENSPNYG00000012240) #31 her8.2 (ENSPNYG00000012263) #32 ENSPNYG00000012316 #33 ITM2C (ENSPNYG00000012355) lpar5b (ENSPNYG00000012388) ##25 Haplochromini_B ANCESTRAL SPECIES 9 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.a.a.a.a.a ##25 ENSGT00950000183136.b.b.d.a.a.b.a ##25 ENSGT00950000183136.b.b.d.b.a.a ##25 Eastern happy MODERN SPECIES 5 dhrs12la (ENSACLG00000014210) ENSACLG00000014191 AP1S3 (ENSACLG00000014183) kcne4 (ENSACLG00000014128) acsl3a (ENSACLG00000014060) ENSACLG00000014051 farsb (ENSACLG00000013951) SGPP2 (ENSACLG00000013928) ENSACLG00000013923 pax3b (ENSACLG00000013881) ENSACLG00000013809 epha4a (ENSACLG00000013751) ENSACLG00000013740 ENSACLG00000013580 pxylp1 (ENSACLG00000013559) SLC25A36 (ENSACLG00000013526) #22 spsb4a (ENSACLG00000013515) #23 ENSACLG00000013213 ENSACLG00000013208 ENSACLG00000013193 CLSTN2 (ENSACLG00000013110) #24 lpar5b (ENSACLG00000012853) #25 rbp2a (ENSACLG00000012843) #26 COPB2 (ENSACLG00000012761) #27 mrps22 (ENSACLG00000012727) #28 PIK3CB (ENSACLG00000012502) #29 PER2 (ENSACLG00000012344) #30 her13 (ENSACLG00000012297) #31 her8.2 (ENSACLG00000012275) #32 ENSACLG00000012262 #33 ITM2C (ENSACLG00000012210) Zebra mbuna MODERN SPECIES 1096 ENSMZEG00005004351 gemin4 (ENSMZEG00005004438) TLCD3A (ENSMZEG00005004444) usp2a (ENSMZEG00005004453) TBCEL (ENSMZEG00005004478) kcne4 (ENSMZEG00005004495) ENSMZEG00005004509 farsb (ENSMZEG00005004544) ENSMZEG00005004588 ENSMZEG00005004594 SGPP2 (ENSMZEG00005004600) ENSMZEG00005004622 pax3b (ENSMZEG00005004628) epha4a (ENSMZEG00005004684) pxylp1 (ENSMZEG00005004789) SLC25A36 (ENSMZEG00005004803) #22 spsb4a (ENSMZEG00005004837) #23 ENSMZEG00005004855 CLSTN2 (ENSMZEG00005004867) #24 ENSMZEG00005004907 #25 rbp2a (ENSMZEG00005004916) #26 COPB2 (ENSMZEG00005004942) #27 mrps22 (ENSMZEG00005005002) #28 foxl2a (ENSMZEG00005005026) nop53 (ENSMZEG00005005033) ENSMZEG00005005051 ENSMZEG00005005059 psma6l (ENSMZEG00005005071) ENSMZEG00005005107 sars2 (ENSMZEG00005005189) si:dkey-260j18.2 (ENSMZEG00005005293) Lyretail cichlid MODERN SPECIES 367 prss16 (ENSNBRG00000003861) serpine2 (ENSNBRG00000003846) wdfy1 (ENSNBRG00000003804) AP1S3 (ENSNBRG00000003658) ENSNBRG00000003634 kcne4 (ENSNBRG00000003631) acsl3a (ENSNBRG00000003327) ENSNBRG00000003270 farsb (ENSNBRG00000003198) SGPP2 (ENSNBRG00000003149) ENSNBRG00000003132 pax3b (ENSNBRG00000003096) epha4a (ENSNBRG00000003033) pxylp1 (ENSNBRG00000002984) ENSNBRG00000002963 SLC25A36 (ENSNBRG00000002942) #22 CLSTN2 (ENSNBRG00000002891) #24 lpar5b (ENSNBRG00000002874) #25 rbp2a (ENSNBRG00000002854) #26 COPB2 (ENSNBRG00000002788) #27 mrps22 (ENSNBRG00000002593) #28 PIK3CB (ENSNBRG00000002386) #29 PER2 (ENSNBRG00000002361) #30 her13 (ENSNBRG00000002345) #31 her8.2 (ENSNBRG00000002319) #32 ENSNBRG00000002297 #33 ITM2C (ENSNBRG00000002259) lpar5b (ENSNBRG00000002226) ##25 lpar5b (ENSNBRG00000002212) ##25 ENSNBRG00000002192 meis3 (ENSNBRG00000002156) Nile tilapia MODERN SPECIES 5 psmd2 (ENSONIG00000010770) prss16 (ENSONIG00000010768) serpine2 (ENSONIG00000010765) wdfy1 (ENSONIG00000014648) dhrs12la (ENSONIG00000014649) ENSONIG00000014647 kcne4 (ENSONIG00000014646) acsl3a (ENSONIG00000014644) farsb (ENSONIG00000014639) ENSONIG00000036757 SGPP2 (ENSONIG00000014638) ENSONIG00000037185 pax3b (ENSONIG00000014632) epha4a (ENSONIG00000014623) pxylp1 (ENSONIG00000030369) SLC25A36 (ENSONIG00000014617) #22 spsb4a (ENSONIG00000014616) #23 CLSTN2 (ENSONIG00000014608) #24 ENSONIG00000034460 lpar5b (ENSONIG00000020974) #25 rbp2a (ENSONIG00000014606) #26 COPB2 (ENSONIG00000014597) #27 mrps22 (ENSONIG00000014596) #28 ENSONIG00000033377 PIK3CB (ENSONIG00000007924) #29 PER2 (ENSONIG00000007937) #30 ENSONIG00000039254 her13 (ENSONIG00000035460) #31 her8.2 (ENSONIG00000007948) #32 ENSONIG00000007949 #33 ITM2C (ENSONIG00000007951) Midas cichlid MODERN SPECIES 1208 ENSACIG00000007678 SLC25A36 (ENSACIG00000007655) #22 spsb4a (ENSACIG00000007648) #23 CLSTN2 (ENSACIG00000007501) #24 Pomacentridae ANCESTRAL SPECIES 5 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 ENSGT00940000161057 Bicolor damselfish MODERN SPECIES 1489 pxylp1 (ENSSPAG00000017892) SLC25A36 (ENSSPAG00000017838) #22 spsb4a (ENSSPAG00000017828) #23 Pomacentridae_A ANCESTRAL SPECIES 4 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d ##25 ENSGT00940000160281 ENSGT00940000161057 Amphiprion ANCESTRAL SPECIES 6 ENSGT00940000164087 ENSGT00940000158424 ENSGT00940000157731 ENSGT00940000165979 ENSGT00970000193372.b.a.b ENSGT00390000010895.a ENSGT00390000013776 ENSGT00940000155954.b ENSGT00530000063489.a ENSGT00940000176917 ENSGT00940000159500 ENSGT00940000166595.b ENSGT00940000156504.i.a ENSGT00940000156948.j ENSGT00390000016324 ENSGT00940000154369.g.b #22 ENSGT01030000234629.C.b #23 ENSGT00970000193381.a.a.a.a.b.b.a.b.f.a.a.a ENSGT00950000183086.a.a.b.h.a #24 ENSGT00950000183136.b.b.c #25 ENSGT00940000160165.a.b #26 ENSGT00900000141083.c.b #27 ENSGT00390000006095 #28 ENSGT00940000157522 #29 ENSGT00940000156342.d #30 ENSGT00940000161398.e #31 ENSGT00940000164578.a.a #32 ENSGT00390000004360.a.a #33 ENSGT00950000183115.a.a.a ENSGT00950000183136.b.b.d.c ##25 ENSGT01040000240444.A.a.a.b Orange clownfish MODERN SPECIES 23 psmd2 (ENSAPEG00000001498) prss16 (ENSAPEG00000001482) serpine2 (ENSAPEG00000001453) wdfy1 (ENSAPEG00000001381) dhrs12la (ENSAPEG00000001325) SCG2 (ENSAPEG00000001314) AP1S3 (ENSAPEG00000001305) kcne4 (ENSAPEG00000001287) acsl3a (ENSAPEG00000001224) farsb (ENSAPEG00000001153) SGPP2 (ENSAPEG00000001108) ENSAPEG00000001098 pax3b (ENSAPEG00000001057) epha4a (ENSAPEG00000000975) pxylp1 (ENSAPEG00000000923) SLC25A36 (ENSAPEG00000000858) #22 spsb4a (ENSAPEG00000000845) #23 ENSAPEG00000000779 CLSTN2 (ENSAPEG00000000726) #24 lpar5b (ENSAPEG00000000689) #25 rbp2a (ENSAPEG00000000675) #26 ENSAPEG00000000653 #27 COPB2 (ENSAPEG00000000555) #27 mrps22 (ENSAPEG00000000548) #28 PIK3CB (ENSAPEG00000000351) #29 PER2 (ENSAPEG00000000330) #30 her13 (ENSAPEG00000024634) #31 her8.2 (ENSAPEG00000024633) #32 ENSAPEG00000024631 ENSAPEG00000024629 ENSAPEG00000024627 Clown anemonefish MODERN SPECIES 2165 pxylp1 (ENSAOCG00000000768) SLC25A36 (ENSAOCG00000012499) #22 spsb4a (ENSAOCG00000012541) #23 SLC4A1AP (ENSAOCG00000012568) supt7l (ENSAOCG00000012589) Spiny chromis MODERN SPECIES 407 pxylp1 (ENSAPOG00000020055) SLC25A36 (ENSAPOG00000020029) #22 spsb4a (ENSAPOG00000019979) #23