Clupeocephala	ANCESTRAL SPECIES	144	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00970000193372.b.b	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C #23	ENSGT00530000064220	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b #35	ENSGT01040000240444.A.b.b	ENSGT01030000234571.b.b.a.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	126	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00530000064220	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b #35	ENSGT01040000240444.A.b.b
Acanthomorphata	ANCESTRAL SPECIES	98	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b #35	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33
Euacanthomorphacea	ANCESTRAL SPECIES	8	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b #35	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Percomorphaceae	ANCESTRAL SPECIES	8	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b #35	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Percomorphaceae_B	ANCESTRAL SPECIES	13	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36
Percomorphaceae_C	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Eupercaria	ANCESTRAL SPECIES	7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Eupecaria_A	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Eupecaria_B	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Eupecaria_C	ANCESTRAL SPECIES	7	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	5	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37	ENSGT00940000154866.A
European seabass	MODERN SPECIES	3	ENSDLAG00005015478	ENSDLAG00005013752 #7	prss16 (ENSDLAG00005015483) #8	serpine2 (ENSDLAG00005015524) #9	wdfy1 (ENSDLAG00005015649) #10	dhrs12la (ENSDLAG00005015755) #11	ENSDLAG00005015875 #12	acsl3a (ENSDLAG00005015895) #14	farsb (ENSDLAG00005016391) #15	ENSDLAG00005016506 #16	SGPP2 (ENSDLAG00005016513) #17	ENSDLAG00005032104 #18	pax3b (ENSDLAG00005016542) #19	EPHA4 (ENSDLAG00005017247) #20	pxylp1 (ENSDLAG00005019541) #21	ENSDLAG00005019555 #22	ENSDLAG00005034208	ENSDLAG00005028083	ENSDLAG00005019584 #23	ENSDLAG00005019627 #24	ENSDLAG00005029656	ENSDLAG00005029788 #25	RBP2 (ENSDLAG00005026550) #26	COPB2 (ENSDLAG00005020529) #27	mrps22 (ENSDLAG00005020753) #28	foxl2 (ENSDLAG00005034171)	PIK3CB (ENSDLAG00005020770) #29	ENSDLAG00005020824 #30	ENSDLAG00005020871 #31	ENSDLAG00005020875 #32	ENSDLAG00005020882 #33
Large yellow croaker	MODERN SPECIES	479	pnkp (ENSLCRG00005017710)	ENSLCRG00005017698	ENSLCRG00005017694	dhrs12la (ENSLCRG00005017536) #11	wdfy1 (ENSLCRG00005017521) #10	ENSLCRG00005017520 #12	kcne4 (ENSLCRG00005017519) #13	acsl3a (ENSLCRG00005016039) #14	ENSLCRG00005016024 #16	farsb (ENSLCRG00005015824) #15	SGPP2 (ENSLCRG00005015823) #17	ENSLCRG00005015822 #18	pax3b (ENSLCRG00005015806) #19	epha4a (ENSLCRG00005014647) #20	pxylp1 (ENSLCRG00005014645) #21	SLC25A36 (ENSLCRG00005014644) #22	spsb4a (ENSLCRG00005014643) #23	CLSTN2 (ENSLCRG00005014635) #24	lpar5b (ENSLCRG00005014634) #25	rbp2a (ENSLCRG00005014633) #26	COPB2 (ENSLCRG00005014204) #27	mrps22 (ENSLCRG00005014181) #28	PIK3CB (ENSLCRG00005011368) #29	PER2 (ENSLCRG00005011302) #30	HES6 (ENSLCRG00005011299) #31	her8.2 (ENSLCRG00005011297) #32	ENSLCRG00005011293 #33	ITM2C (ENSLCRG00005011291) #34	lpar5b (ENSLCRG00005011289) #25	ENSLCRG00005011287 #36	ENSLCRG00005011285 #36
Gilthead seabream	MODERN SPECIES	11	psmd2 (ENSSAUG00010020121) #7	prss16 (ENSSAUG00010020022) #8	serpine2 (ENSSAUG00010020016) #9	dhrs12la (ENSSAUG00010019998) #11	wdfy1 (ENSSAUG00010019952) #10	ENSSAUG00010019944 #12	kcne4 (ENSSAUG00010019943) #13	acsl3a (ENSSAUG00010019839) #14	ENSSAUG00010019835 #16	farsb (ENSSAUG00010019829) #15	SGPP2 (ENSSAUG00010019825) #17	ENSSAUG00010019823 #18	pax3b (ENSSAUG00010019792) #19	epha4a (ENSSAUG00010016809) #20	pxylp1 (ENSSAUG00010016785) #21	SLC25A36 (ENSSAUG00010016782) #22	spsb4a (ENSSAUG00010016778) #23	CLSTN2 (ENSSAUG00010014662) #24	lpar5b (ENSSAUG00010014631) #25	rbp2a (ENSSAUG00010014627) #26	COPB2 (ENSSAUG00010012728) #27	mrps22 (ENSSAUG00010012665) #28	PIK3CB (ENSSAUG00010011008) #29	PER2 (ENSSAUG00010010319) #30	HES6 (ENSSAUG00010010304) #31	her8.2 (ENSSAUG00010010303) #32	ENSSAUG00010010300 #33	ITM2C (ENSSAUG00010010296) #34	lpar5b (ENSSAUG00010010292) #35	lpar5b (ENSSAUG00010010291) #35	lpar5b (ENSSAUG00010010288) #35
Perciformes	ANCESTRAL SPECIES	10	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Cottioidei	ANCESTRAL SPECIES	4	ENSGT00940000177736	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37	ENSGT00940000154866.A
Lumpfish	MODERN SPECIES	4	ENSCLMG00005013019	ENSCLMG00005013017	psmd2 (ENSCLMG00005010698) #7	prss16 (ENSCLMG00005010668) #8	serpine2 (ENSCLMG00005010667) #9	dhrs12la (ENSCLMG00005010665) #11	wdfy1 (ENSCLMG00005010662) #10	ENSCLMG00005010642 #12	kcne4 (ENSCLMG00005010641) #13	acsl3a (ENSCLMG00005010121) #14	farsb (ENSCLMG00005010117) #15	SGPP2 (ENSCLMG00005010114) #17	ENSCLMG00005010110 #18	pax3b (ENSCLMG00005010108) #19	pxylp1 (ENSCLMG00005010107) #21	SLC25A36 (ENSCLMG00005010096) #22	spsb4a (ENSCLMG00005010095) #23	lpar5b (ENSCLMG00005010094) #25	ENSCLMG00005010093	CLSTN2 (ENSCLMG00005010091) #24	rbp2a (ENSCLMG00005010090) #26	COPB2 (ENSCLMG00005010088) #27	mrps22 (ENSCLMG00005010084) #28	PIK3CB (ENSCLMG00005008841) #29	ENSCLMG00005008838 #30	her13 (ENSCLMG00005008837) #31	her8.2 (ENSCLMG00005008835) #32	ENSCLMG00005008834 #33	ITM2C (ENSCLMG00005008833) #34	ENSCLMG00005008832 #36	meis3 (ENSCLMG00005008829) #37
Stickleback	MODERN SPECIES		dhrs13b.2 (ENSGACG00000005366)	smtnl (ENSGACG00000005375)	SEBOX (ENSGACG00000005381)	tmem199 (ENSGACG00000005384)	poldip2 (ENSGACG00000005396)	LRRC75A (ENSGACG00000005426)	crk (ENSGACG00000005430)	ywhae1 (ENSGACG00000005434)	myo1cb (ENSGACG00000005438)	SLC43A2 (ENSGACG00000005457)	pitpnaa (ENSGACG00000005469)	inpp5ka (ENSGACG00000005511)	ECEL1 (ENSGACG00000005523)	zgc:153039 (ENSGACG00000005540)	ENSGACG00000005551 #21	SLC25A36 (ENSGACG00000005559) #22	CLSTN2 (ENSGACG00000005585) #24	lpar5b (ENSGACG00000005595) #25	rbp2a (ENSGACG00000005598) #26	COPB2 (ENSGACG00000005621) #27	mrps22 (ENSGACG00000005634) #28	foxl2b (ENSGACG00000005639)	PIK3CB (ENSGACG00000005645) #29	ENSGACG00000005662 #30	HES6 (ENSGACG00000005680) #31	ENSGACG00000005684 #33	ENSGACG00000005715	ENSGACG00000005721	ENSGACG00000005725 #36	meis3 (ENSGACG00000005732) #37	ENSGACG00000005744
Perciformes_a	ANCESTRAL SPECIES	9	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Pike perch	MODERN SPECIES	60	psmd2 (ENSSLUG00000024595) #7	prss16 (ENSSLUG00000024507) #8	serpine2 (ENSSLUG00000024504) #9	dhrs12la (ENSSLUG00000024461) #11	wdfy1 (ENSSLUG00000024451) #10	ENSSLUG00000024445 #12	kcne4 (ENSSLUG00000024444) #13	acsl3a (ENSSLUG00000023868) #14	ENSSLUG00000023744 #16	farsb (ENSSLUG00000023706) #15	SGPP2 (ENSSLUG00000023690) #17	ENSSLUG00000023684 #18	pax3b (ENSSLUG00000023671) #19	epha4a (ENSSLUG00000023403) #20	pxylp1 (ENSSLUG00000023371) #21	SLC25A36 (ENSSLUG00000023361) #22	spsb4a (ENSSLUG00000023357) #23	CLSTN2 (ENSSLUG00000023266) #24	lpar5b (ENSSLUG00000023242) #25	rbp2a (ENSSLUG00000023238) #26	COPB2 (ENSSLUG00000023150) #27	mrps22 (ENSSLUG00000023133) #28	PIK3CB (ENSSLUG00000022808) #29	PER2 (ENSSLUG00000022765) #30	her13 (ENSSLUG00000022759) #31	her8.2 (ENSSLUG00000022756) #32	ENSSLUG00000022753	ENSSLUG00000022750 #33	ITM2C (ENSSLUG00000022743) #34	lpar5b (ENSSLUG00000022740) #35	ENSSLUG00000022736 #36
Channel bull blenny	MODERN SPECIES	4	ENSCGOG00000006008	ENSCGOG00000006009	wdfy1 (ENSCGOG00000006020) #10	dhrs12la (ENSCGOG00000006280) #11	ENSCGOG00000006349 #12	kcne4 (ENSCGOG00000006352) #13	acsl3a (ENSCGOG00000006366) #14	farsb (ENSCGOG00000006513) #15	ENSCGOG00000007342 #16	SGPP2 (ENSCGOG00000007343) #17	ENSCGOG00000007347 #18	pax3b (ENSCGOG00000007355) #19	ENSCGOG00000007483	epha4a (ENSCGOG00000007497) #20	pxylp1 (ENSCGOG00000008533) #21	SLC25A36 (ENSCGOG00000008534) #22	spsb4a (ENSCGOG00000008585) #23	CLSTN2 (ENSCGOG00000008630) #24	ENSCGOG00000009663	mrps22 (ENSCGOG00000009668) #28	PIK3CB (ENSCGOG00000009836) #29	her13 (ENSCGOG00000011185) #31	her8.2 (ENSCGOG00000011188) #32	ENSCGOG00000011193 #33	ITM2C (ENSCGOG00000011325) #34	ENSCGOG00000011328 #36	ENSCGOG00000011330 #36	meis3 (ENSCGOG00000011355) #37	ENSCGOG00000011934	sirt2 (ENSCGOG00000011964)	dmac2 (ENSCGOG00000012677)
Ballan wrasse	MODERN SPECIES	93	ENSLBEG00000017884 #12	kcne4 (ENSLBEG00000017894) #13	acsl3a (ENSLBEG00000017932) #14	ENSLBEG00000018008	ENSLBEG00000018031	sirt2 (ENSLBEG00000018065)	farsb (ENSLBEG00000018127) #15	ENSLBEG00000018194 #16	SGPP2 (ENSLBEG00000018207) #17	ENSLBEG00000018228 #18	pax3b (ENSLBEG00000018254) #19	epha4a (ENSLBEG00000018304) #20	ENSLBEG00000018373	ENSLBEG00000018386	pxylp1 (ENSLBEG00000018402) #21	SLC25A36 (ENSLBEG00000018438) #22	spsb4a (ENSLBEG00000018485) #23	CLSTN2 (ENSLBEG00000018525) #24	lpar5b (ENSLBEG00000018605) #25	rbp2a (ENSLBEG00000018618) ##26	COPB2 (ENSLBEG00000018650) #27	mrps22 (ENSLBEG00000018725) #28
Tetraodontidae	ANCESTRAL SPECIES	10	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00940000160165.a.a.a ##26	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37	ENSGT00940000154866.A
Tetraodon	MODERN SPECIES	8	psmd2 (ENSTNIG00000014301) #7	prss16 (ENSTNIG00000014302) #8	serpine2 (ENSTNIG00000014303) #9	wdfy1 (ENSTNIG00000014304) #10	dhrs12la (ENSTNIG00000014305) #11	AP1S3 (ENSTNIG00000014306)	ENSTNIG00000014307 #12	kcne4 (ENSTNIG00000014308) #13	acsl3a (ENSTNIG00000014309) #14	farsb (ENSTNIG00000014310) #15	eef1b2 (ENSTNIG00000014311)	SGPP2 (ENSTNIG00000014312) #17	pax3b (ENSTNIG00000014313) #19	epha4a (ENSTNIG00000014314) #20	pxylp1 (ENSTNIG00000014315) #21	ENSTNIG00000014316 #22	spsb4a (ENSTNIG00000014317) #23	ENSTNIG00000014318 #24	lpar5b (ENSTNIG00000014319) #25	RBP2 (ENSTNIG00000014320) #26	foxl2b (ENSTNIG00000014321)	PIK3CB (ENSTNIG00000014322) #29	PER2 (ENSTNIG00000014323) #30	her13 (ENSTNIG00000014324) #31	her8.2 (ENSTNIG00000000385) #32	ENSTNIG00000014325 #33	ITM2C (ENSTNIG00000014326) #34	ENSTNIG00000014327 #36	ENSTNIG00000014328	GJD2 (ENSTNIG00000014329)	ENSTNIG00000001535
Fugu	MODERN SPECIES	2	prss16 (ENSTRUG00000010946) #8	serpine2 (ENSTRUG00000010637) #9	wdfy1 (ENSTRUG00000010333) #10	dhrs12la (ENSTRUG00000010229) #11	ENSTRUG00000031332	ENSTRUG00000025682 #12	kcne4 (ENSTRUG00000010143) #13	acsl3a (ENSTRUG00000009826) #14	farsb (ENSTRUG00000009483) #15	ENSTRUG00000021552 #16	SGPP2 (ENSTRUG00000009369) #17	ENSTRUG00000021876 #18	pax3b (ENSTRUG00000009198) #19	epha4a (ENSTRUG00000008442) #20	pxylp1 (ENSTRUG00000020231) #21	ENSTRUG00000008215 #22	spsb4a (ENSTRUG00000026889) #23	CLSTN2 (ENSTRUG00000030827) #24	ENSTRUG00000032783	lpar5b (ENSTRUG00000023839) #25	rbp2a (ENSTRUG00000008045) ##26	mrps22 (ENSTRUG00000007940) #28	PIK3CB (ENSTRUG00000007179) #29	PER2 (ENSTRUG00000006817) #30	her13 (ENSTRUG00000006688) #31	her8.2 (ENSTRUG00000006663) #32	ENSTRUG00000006438 #33	ITM2C (ENSTRUG00000006075) #34	ENSTRUG00000005924 #36	ENSTRUG00000032831 #36	meis3 (ENSTRUG00000000345) #37
Percomorphaceae_D	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Anabantaria	ANCESTRAL SPECIES	9	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000011642 #7	prss16 (ENSMAMG00000011675) #8	serpine2 (ENSMAMG00000011683) #9	wdfy1 (ENSMAMG00000011685) #10	dhrs12la (ENSMAMG00000011712) #11	ENSMAMG00000026117 #12	kcne4 (ENSMAMG00000011787) #13	acsl3a (ENSMAMG00000011800) #14	farsb (ENSMAMG00000011835) #15	ENSMAMG00000011897 #16	SGPP2 (ENSMAMG00000011912) #17	ENSMAMG00000011970 #18	pax3b (ENSMAMG00000011978) #19	EPHA4 (ENSMAMG00000012022) #20	pxylp1 (ENSMAMG00000012120) #21	ENSMAMG00000026348 #22	ENSMAMG00000012146 #23	ENSMAMG00000012176 #24	ENSMAMG00000024587 #25	RBP2 (ENSMAMG00000012240) #26	MRPS22 (ENSMAMG00000012264) #28	ENSMAMG00000012296 #29	ENSMAMG00000012347 #30	ENSMAMG00000012374 #31	ENSMAMG00000027547 #32	ENSMAMG00000012469 #33	ENSMAMG00000012502 #34	ENSMAMG00000028330 #36	meis3 (ENSMAMG00000012541) #37	ENSMAMG00000026554	sirt2 (ENSMAMG00000012576)
Anabantoidei	ANCESTRAL SPECIES	14	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Siamese fighting fish	MODERN SPECIES	4	prss16 (ENSBSLG00000020948) #8	serpine2 (ENSBSLG00000020585) #9	wdfy1 (ENSBSLG00000020575) #10	dhrs12la (ENSBSLG00000020564) #11	ENSBSLG00000020560 #12	kcne4 (ENSBSLG00000020558) #13	acsl3a (ENSBSLG00000019665) #14	ENSBSLG00000019622 #16	farsb (ENSBSLG00000019456) #15	SGPP2 (ENSBSLG00000019393) #17	ENSBSLG00000019391 #18	pax3b (ENSBSLG00000019381) #19	epha4a (ENSBSLG00000018927) #20	pxylp1 (ENSBSLG00000018811) #21	ENSBSLG00000018797	SLC25A36 (ENSBSLG00000018769) #22	spsb4a (ENSBSLG00000018738) #23	CLSTN2 (ENSBSLG00000016943) #24	rbp2a (ENSBSLG00000015872) #26	COPB2 (ENSBSLG00000015276) #27	mrps22 (ENSBSLG00000015161) #28	PIK3CB (ENSBSLG00000013020) #29	ENSBSLG00000012891 #30	her13 (ENSBSLG00000012880) #31	ENSBSLG00000012856 #33	ITM2C (ENSBSLG00000012845) #34	ENSBSLG00000012841 #25	ENSBSLG00000012832 #36	meis3 (ENSBSLG00000012619) #37	ENSBSLG00000012579	sirt2 (ENSBSLG00000012322)
Climbing perch	MODERN SPECIES	4	ENSATEG00000020752	ENSATEG00000020821	ENSATEG00000020911 #7	prss16 (ENSATEG00000020982) #8	serpine2 (ENSATEG00000020995) #9	wdfy1 (ENSATEG00000021008) #10	dhrs12la (ENSATEG00000021047) #11	ENSATEG00000021367 #12	kcne4 (ENSATEG00000021395) #13	acsl3a (ENSATEG00000021403) #14	farsb (ENSATEG00000021441) #15	SGPP2 (ENSATEG00000021475) #17	pax3b (ENSATEG00000021488) #19	EPHA4 (ENSATEG00000021519) #20	pxylp1 (ENSATEG00000021551) #21	ENSATEG00000021568 #22	ENSATEG00000021585 #23	ENSATEG00000021594 #24	ENSATEG00000021614 #25	ENSATEG00000026860	RBP2 (ENSATEG00000021618) #26	COPB2 (ENSATEG00000021631) #27	MRPS22 (ENSATEG00000021646) #28	PIK3CB (ENSATEG00000021657) #29	ENSATEG00000021691 #30	ENSATEG00000021709 #31	ENSATEG00000025611 #32	ENSATEG00000021754 #33	ITM2C (ENSATEG00000021766) #34	ENSATEG00000021777 #35	ENSATEG00000021783 #36
Carangaria	ANCESTRAL SPECIES	8	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Carangaria_A	ANCESTRAL SPECIES	37	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Seriola	ANCESTRAL SPECIES	51	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Yellowtail amberjack	MODERN SPECIES	3091															pxylp1 (ENSSLDG00000025042) #21	SLC25A36 (ENSSLDG00000025033) #22	spsb4a (ENSSLDG00000025027) #23	CLSTN2 (ENSSLDG00000025020) #24	lpar5b (ENSSLDG00000025014) #25	rbp2a (ENSSLDG00000025008) #26	COPB2 (ENSSLDG00000024979) #27	mrps22 (ENSSLDG00000024969) #28	PIK3CB (ENSSLDG00000024911) #29	ENSSLDG00000024851 #30	HES6 (ENSSLDG00000024834) #31	her8.2 (ENSSLDG00000024823) #32	ENSSLDG00000024805 #33	ITM2C (ENSSLDG00000024796) #34	lpar5b (ENSSLDG00000024790) #35	ENSSLDG00000024786
Greater amberjack	MODERN SPECIES	114	serpine2 (ENSSDUG00000009476) #9	wdfy1 (ENSSDUG00000009505) #10	dhrs12la (ENSSDUG00000009540) #11	AP1S3 (ENSSDUG00000009569)	ENSSDUG00000009583 #12	kcne4 (ENSSDUG00000009590) #13	acsl3a (ENSSDUG00000009608) #14	farsb (ENSSDUG00000009685) #15	ENSSDUG00000009771 #16	SGPP2 (ENSSDUG00000009776) #17	ENSSDUG00000009793 #18	pax3b (ENSSDUG00000009804) #19	epha4a (ENSSDUG00000009839) #20	ENSSDUG00000009883 #20	pxylp1 (ENSSDUG00000009897) #21	SLC25A36 (ENSSDUG00000009920) #22	spsb4a (ENSSDUG00000009950) #23	CLSTN2 (ENSSDUG00000009967) #24	lpar5b (ENSSDUG00000010000) #25	rbp2a (ENSSDUG00000010022) #26	COPB2 (ENSSDUG00000010056) #27	mrps22 (ENSSDUG00000010135) #28	foxl2b (ENSSDUG00000010149)	PIK3CB (ENSSDUG00000010182) #29	PER2 (ENSSDUG00000010286) #30	HES6 (ENSSDUG00000010317) #31	her8.2 (ENSSDUG00000010328) #32	ENSSDUG00000010338 #33	ITM2C (ENSSDUG00000010370) #34	lpar5b (ENSSDUG00000010411) #35	ENSSDUG00000010420 #36
Barramundi perch	MODERN SPECIES	124	psmd2 (ENSLCAG00010002522) #7	prss16 (ENSLCAG00010002731) #8	serpine2 (ENSLCAG00010002733) #9	wdfy1 (ENSLCAG00010002740) #10	dhrs12la (ENSLCAG00010002752) #11	ENSLCAG00010002758 #12	kcne4 (ENSLCAG00010002760) #13	acsl3a (ENSLCAG00010002837) #14	farsb (ENSLCAG00010003414) #15	ENSLCAG00010003460 #16	SGPP2 (ENSLCAG00010003464) #17	ENSLCAG00010003467 #18	pax3b (ENSLCAG00010003474) #19	epha4a (ENSLCAG00010003599) #20	pxylp1 (ENSLCAG00010004187) #21	SLC25A36 (ENSLCAG00010004194) #22	spsb4a (ENSLCAG00010004206) #23	CLSTN2 (ENSLCAG00010004213) #24	lpar5b (ENSLCAG00010004216) #25	rbp2a (ENSLCAG00010004218) #26	COPB2 (ENSLCAG00010004245) #27	mrps22 (ENSLCAG00010004320) #28	PIK3CB (ENSLCAG00010004460) #29	ENSLCAG00010004908 #30	HES6 (ENSLCAG00010005146) #31	her8.2 (ENSLCAG00010005153) #32	myo7aa (ENSLCAG00010005254)	ENSLCAG00010005772
Pleuronectoidei	ANCESTRAL SPECIES	13	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.d #35	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00940000160281 #36	ENSGT00940000161057 #37	ENSGT00940000154866.A
Tongue sole	MODERN SPECIES	14	bcl9l (ENSCSEG00000006896)	ENSCSEG00000006875	TREH (ENSCSEG00000006851)	ENSCSEG00000006846	FBXO40 (ENSCSEG00000006833)	ttc36 (ENSCSEG00000006840)	NECTIN1 (ENSCSEG00000006820)	ENSCSEG00000006815	trpc6a (ENSCSEG00000006802)	pgr (ENSCSEG00000006795)	ENSCSEG00000006789	ARHGAP42 (ENSCSEG00000006717)	cntn5 (ENSCSEG00000006697)	epha4a (ENSCSEG00000006677) #20	pxylp1 (ENSCSEG00000006664) #21	SLC25A36 (ENSCSEG00000006649) #22	spsb4a (ENSCSEG00000006639) #23	panx1a (ENSCSEG00000006624)	ENSCSEG00000006620	clns1a (ENSCSEG00000006611)	aqp11 (ENSCSEG00000006605)	pak1 (ENSCSEG00000006576)	GDPD4 (ENSCSEG00000006568)	myo7aa (ENSCSEG00000006533)	ompa (ENSCSEG00000006525)	CAPN5 (ENSCSEG00000006517)	dcun1d5 (ENSCSEG00000006513)	CUL5 (ENSCSEG00000006499)	SLC35F2 (ENSCSEG00000006494)	flot2b (ENSCSEG00000006488)	FAM222B (ENSCSEG00000006481)
Turbot	MODERN SPECIES	15	ENSSMAG00000020563	ENSSMAG00000020589 #7	prss16 (ENSSMAG00000020598) #8	serpine2 (ENSSMAG00000020601) #9	wdfy1 (ENSSMAG00000020603) #10	dhrs12la (ENSSMAG00000020608) #11	ENSSMAG00000020660 #12	kcne4 (ENSSMAG00000020661) #13	acsl3a (ENSSMAG00000020663) #14	farsb (ENSSMAG00000020668) #15	ENSSMAG00000020677 #16	SGPP2 (ENSSMAG00000020680) #17	ENSSMAG00000020682	pax3b (ENSSMAG00000020683) #19	EPHA4 (ENSSMAG00000020688) #20	ENSSMAG00000020692 #22	pxylp1 (ENSSMAG00000020689) #21	ENSSMAG00000020694 #23	ENSSMAG00000027874	ENSSMAG00000020698 #24	ENSSMAG00000020702 #35	RBP2 (ENSSMAG00000025467) #26	COPB2 (ENSSMAG00000020707) #27	MRPS22 (ENSSMAG00000020714) #28	PIK3CB (ENSSMAG00000000112) #29	ENSSMAG00000000129 #30	ENSSMAG00000029620 #31	ENSSMAG00000000161 #32	ENSSMAG00000000166 #33	ENSSMAG00000000194	ENSSMAG00000000173 #34
Ovalentaria	ANCESTRAL SPECIES	8	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36
Atherinomorphae	ANCESTRAL SPECIES	15	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36
Cyprinodontiformes	ANCESTRAL SPECIES	12	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36
Cyprinodontoidei	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36
Poeciliinae	ANCESTRAL SPECIES	14	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000162556.C.c	ENSGT00940000161289	ENSGT00530000063405.b.e	ENSGT00940000162996.y.a.b.a	ENSGT00510000047299.d	ENSGT00940000160721
Poecilia	ANCESTRAL SPECIES	2	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000162556.C.c	ENSGT00940000161289	ENSGT00530000063405.b.e	ENSGT00940000162996.y.a.b.a	ENSGT00940000162996.y.a.a.c.a.a	ENSGT00510000047299.d
NAME_6	ANCESTRAL SPECIES	60															ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000162556.C.c	ENSGT00940000161289	ENSGT00530000063405.b.e	ENSGT00940000162996.y.a.b.a	ENSGT00940000162996.y.a.b.b.b	ENSGT00940000162996.y.a.a.c.a.a
Amazon molly	MODERN SPECIES	325															pxylp1 (ENSPFOG00000008537) #21	SLC25A36 (ENSPFOG00000008439) #22	spsb4a (ENSPFOG00000008391) #23	CLSTN2 (ENSPFOG00000007669) #24	lpar5b (ENSPFOG00000020309) #25	rbp2a (ENSPFOG00000007568) #26	ENSPFOG00000007552	COPB2 (ENSPFOG00000007284) #27	mrps22 (ENSPFOG00000007141) #28	foxl2b (ENSPFOG00000020308)	PIK3CB (ENSPFOG00000006566) #29	PER2 (ENSPFOG00000006138) #30	ENSPFOG00000006124	usp2a (ENSPFOG00000005925)	tbcela (ENSPFOG00000005811)	ENSPFOG00000022258	ENSPFOG00000004739
Sailfin molly	MODERN SPECIES	695															pxylp1 (ENSPLAG00000008564) #21	SLC25A36 (ENSPLAG00000008595) #22	spsb4a (ENSPLAG00000008604) #23
Guppy	MODERN SPECIES	443	psmd2 (ENSPREG00000010322) #7	serpine2 (ENSPREG00000010402) #9	wdfy1 (ENSPREG00000010455) #10	dhrs12la (ENSPREG00000010484) #11	AP1S3 (ENSPREG00000010517)	ENSPREG00000010524 #12	kcne4 (ENSPREG00000010533) #13	acsl3a (ENSPREG00000010542) #14	farsb (ENSPREG00000010583) #15	ENSPREG00000010621 #16	SGPP2 (ENSPREG00000010631) #17	ENSPREG00000010649 #18	pax3b (ENSPREG00000010656) #19	epha4a (ENSPREG00000010744) #20	pxylp1 (ENSPREG00000010798) #21	SLC25A36 (ENSPREG00000010816) #22	spsb4a (ENSPREG00000010844) #23	CLSTN2 (ENSPREG00000010875) #24	lpar5b (ENSPREG00000010933) #25	ENSPREG00000010948	rbp2a (ENSPREG00000010960) #26	ENSPREG00000010971	COPB2 (ENSPREG00000010996) #27	mrps22 (ENSPREG00000011070) #28	PIK3CB (ENSPREG00000011211) #29	PER2 (ENSPREG00000011271) #30	ENSPREG00000011295	usp2a (ENSPREG00000011319)	tbcela (ENSPREG00000011348)	ENSPREG00000011380	ENSPREG00000011466
Platyfish	MODERN SPECIES	9	prss16 (ENSXMAG00000008194) #8	serpine2 (ENSXMAG00000008196) #9	wdfy1 (ENSXMAG00000008220) #10	dhrs12la (ENSXMAG00000008246) #11	ENSXMAG00000008263 #12	AP1S3 (ENSXMAG00000008255)	kcne4 (ENSXMAG00000008266) #13	acsl3a (ENSXMAG00000008269) #14	ENSXMAG00000029278 #16	farsb (ENSXMAG00000008280) #15	ENSXMAG00000021789 #18	SGPP2 (ENSXMAG00000008302) #17	pax3b (ENSXMAG00000008304) #19	epha4a (ENSXMAG00000008306) #20	pxylp1 (ENSXMAG00000008348) #21	SLC25A36 (ENSXMAG00000008353) #22	spsb4a (ENSXMAG00000008361) #23	CLSTN2 (ENSXMAG00000008362) #24	lpar5b (ENSXMAG00000020218) #25	rbp2a (ENSXMAG00000006544) #26	COPB2 (ENSXMAG00000006552) #27	mrps22 (ENSXMAG00000006580) #28	ENSXMAG00000029209	foxl2b (ENSXMAG00000020219)	PIK3CB (ENSXMAG00000006594) #29	PER2 (ENSXMAG00000006651) #30	ENSXMAG00000006705	usp2a (ENSXMAG00000006708)	tbcela (ENSXMAG00000006724)	ENSXMAG00000006737	PGAP2 (ENSXMAG00000006831)
NAME_4	ANCESTRAL SPECIES	102	ENSGT00940000153386.B #7	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00940000163911.a.a.a.s	ENSGT00940000163911.a.a.b.a.a.a.b.d.a.a
Mummichog	MODERN SPECIES	2202	prss16 (ENSFHEG00000021150) #8	serpine2 (ENSFHEG00000021132) #9	wdfy1 (ENSFHEG00000021120) #10	dhrs12la (ENSFHEG00000021061) #11	AP1S3 (ENSFHEG00000021028)	ENSFHEG00000021018 #12	kcne4 (ENSFHEG00000020998) #13	acsl3a (ENSFHEG00000020987) #14	farsb (ENSFHEG00000020939) #15	ENSFHEG00000020916	SGPP2 (ENSFHEG00000020896) #17	ENSFHEG00000020864 #18	pax3b (ENSFHEG00000020858) #19	epha4a (ENSFHEG00000020823) #20	pxylp1 (ENSFHEG00000020749) #21	SLC25A36 (ENSFHEG00000020736) #22	spsb4a (ENSFHEG00000020702) #23	CLSTN2 (ENSFHEG00000020690) #24	lpar5b (ENSFHEG00000020648) #25	rbp2a (ENSFHEG00000020640) #26	ENSFHEG00000020604 #27	COPB2 (ENSFHEG00000020594) #27	mrps22 (ENSFHEG00000020557) #28	foxl2b (ENSFHEG00000020548)	ENSFHEG00000020532	PIK3CB (ENSFHEG00000020512) #29	PER2 (ENSFHEG00000020488) #30	ENSFHEG00000020468
Sheepshead minnow	MODERN SPECIES	73																SLC25A36 (ENSCVAG00000021401) #22
Aplocheiloidei	ANCESTRAL SPECIES	246																ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00390000006095 #28	ENSGT00940000157522.b #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31
Mangrove rivulus	MODERN SPECIES	62	ENSKMAG00000003188	lhx1a (ENSKMAG00000003163)	bcas3 (ENSKMAG00000003039)	tbx2b (ENSKMAG00000002976)	tbx4 (ENSKMAG00000002942)	brip1 (ENSKMAG00000002856)	PPM1D (ENSKMAG00000002841)	appbp2 (ENSKMAG00000002779)	ENSKMAG00000002765	USP6 (ENSKMAG00000002625)	ENSKMAG00000002543	tmem97 (ENSKMAG00000002514)	ULK2 (ENSKMAG00000002479)	aldh3a2a (ENSKMAG00000002434)	ENSKMAG00000002417	SLC25A36 (ENSKMAG00000002380) #22	spsb4a (ENSKMAG00000002358) #23	ENSKMAG00000002334	CLSTN2 (ENSKMAG00000002240) #24	lpar5b (ENSKMAG00000002207) #25	rbp2a (ENSKMAG00000002179) #26	mrps22 (ENSKMAG00000002163) #28	foxl2b (ENSKMAG00000002135)	PIK3CB (ENSKMAG00000002028) #29	PER2 (ENSKMAG00000001995) #30	her13 (ENSKMAG00000001975) #31
Turquoise killifish	MODERN SPECIES	1085																SLC25A36 (ENSNFUG00015018450) #22
Oryzias	ANCESTRAL SPECIES	8	ENSGT00950000183078.b.a.b	ENSGT00950000182929.A	ENSGT00940000163374	ENSGT00940000157786	ENSGT00940000157676	ENSGT00940000155162.o.b	ENSGT00940000163520.B.g	ENSGT00940000163520.A.b.b.b.b	ENSGT00940000163520.A.b.b.a	ENSGT00940000162978.a.b	ENSGT00940000162775	ENSGT00940000154525.b.b	ENSGT00940000165141.a	ENSGT00940000159302	ENSGT00390000017365.b	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00540000072704	ENSGT00940000157083	ENSGT00390000014712.a.g.a	ENSGT00940000157853.a
Oryzias_b	ANCESTRAL SPECIES	38	ENSGT00950000183078.b.a.b	ENSGT00950000182929.A	ENSGT00940000163374	ENSGT00940000157786	ENSGT00940000157676	ENSGT00940000155162.o.b	ENSGT00940000163520.B.g	ENSGT00940000163520.A.b.b.b.b	ENSGT00940000163520.A.b.b.a	ENSGT00940000162978.a.b	ENSGT00940000162775	ENSGT00940000154525.b.b	ENSGT00940000165141.a	ENSGT00940000159302	ENSGT00390000017365.b	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00540000072704	ENSGT00940000157083	ENSGT00390000014712.a.g.a	ENSGT00940000157853.a
Indian medaka	MODERN SPECIES	19	rps4x (ENSOMEG00000020132)	cited1 (ENSOMEG00000020143)	hdac8 (ENSOMEG00000020217)	sycp3 (ENSOMEG00000020251)	ENSOMEG00000020344	leap2 (ENSOMEG00000020370)	ENSOMEG00000020380	ENSOMEG00000020389	ENSOMEG00000020407	ENSOMEG00000020415	ENSOMEG00000020449	hnrnpc (ENSOMEG00000020488)	ndrg2 (ENSOMEG00000020643)	ENSOMEG00000020724	ENSOMEG00000021257	SLC25A36 (ENSOMEG00000021336) #22	spsb4a (ENSOMEG00000021373) #23	ENSOMEG00000021411	znf219 (ENSOMEG00000021440)	ENSOMEG00000021462	btr12 (ENSOMEG00000021478)	ENSOMEG00000021652	ENSOMEG00000021736	ENSOMEG00000021768	ENSOMEG00000021780	ENSOMEG00000021794	ENSOMEG00000021810	ENSOMEG00000021820	ENSOMEG00000021859	ENSOMEG00000021875	ENSOMEG00000021881
Javanese ricefish	MODERN SPECIES	4	SIK3 (ENSOJAG00000010711)	SIDT2 (ENSOJAG00000010763)	CEP164 (ENSOJAG00000011238)	apoa1b (ENSOJAG00000011266)	ENSOJAG00000011303	bace1 (ENSOJAG00000011345)	pcsk7 (ENSOJAG00000011470)	tagln (ENSOJAG00000012135)	ENSOJAG00000012154	cbln20 (ENSOJAG00000012243)	ENSOJAG00000012260	nudt8 (ENSOJAG00000012280)	ENSOJAG00000012290	pnkp (ENSOJAG00000012584)	zgc:162193 (ENSOJAG00000013822)	SLC25A36 (ENSOJAG00000013846) #22	spsb4a (ENSOJAG00000013867) #23	CLSTN2 (ENSOJAG00000013906) #24	lpar5b (ENSOJAG00000014509) #25	ENSOJAG00000014518	rbp2a (ENSOJAG00000014549) #26	COPB2 (ENSOJAG00000014602) #27	mrps22 (ENSOJAG00000014852) #28	PIK3CB (ENSOJAG00000014934) #29	PER2 (ENSOJAG00000015635) #30	her13 (ENSOJAG00000016109) #31	her8.2 (ENSOJAG00000016131) #32	ENSOJAG00000016142 #33	usf1l (ENSOJAG00000016387)	ENSOJAG00000016398	abcg4b (ENSOJAG00000016402)
Oryzias_a	ANCESTRAL SPECIES	51	ENSGT00950000183078.b.a.b	ENSGT00950000182929.A	ENSGT00940000163374	ENSGT00940000157786	ENSGT00940000157676	ENSGT00940000155162.o.b	ENSGT00940000163520.B.g	ENSGT00940000163520.A.b.b.b.b	ENSGT00940000163520.A.b.b.a	ENSGT00940000162978.a.b	ENSGT00940000162775	ENSGT00940000154525.b.b	ENSGT00940000165141.a	ENSGT00940000159302	ENSGT00390000017365.b	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00540000072704	ENSGT00940000157083	ENSGT00390000014712.a.g.a	ENSGT00940000157853.a
Japanese Medaka HdrR	MODERN SPECIES	4	apoa1b (ENSORLG00000015744)	ENSORLG00000028989	ENSORLG00000015728	bace1 (ENSORLG00000025617)	pcsk7 (ENSORLG00000015722)	tagln (ENSORLG00000015714)	ENSORLG00000021874	cbln20 (ENSORLG00000015708)	cbln20 (ENSORLG00000015707)	ENSORLG00000015701	nudt8 (ENSORLG00000015682)	MFRP (ENSORLG00000015680)	ENSORLG00000015672	pnkp (ENSORLG00000015667)	zgc:162193 (ENSORLG00000015653)	ENSORLG00000015639 #22	spsb4a (ENSORLG00000015620) #23	ENSORLG00000015614 #24	lpar5b (ENSORLG00000015601) #25	rbp2a (ENSORLG00000022031) #26	COPB2 (ENSORLG00000015574) #27	mrps22 (ENSORLG00000015543) #28	foxl2a (ENSORLG00000020203)	PIK3CB (ENSORLG00000015529) #29	her13 (ENSORLG00000015432) #31	PER2 (ENSORLG00000015456) #30	her8.2 (ENSORLG00000015428) #32	ENSORLG00000026928	ENSORLG00000022288	ENSORLG00000015424 #33	gkup (ENSORLG00000025988)
Chinese medaka	MODERN SPECIES	1060	ENSOSIG00000003101	SIK3 (ENSOSIG00000003169)	SIDT2 (ENSOSIG00000005029)	ENSOSIG00000005248	pcsk7 (ENSOSIG00000005269)	ENSOSIG00000005840	bace1 (ENSOSIG00000005850)	tagln (ENSOSIG00000005871)	ENSOSIG00000005876	cbln20 (ENSOSIG00000005879)	cbln20 (ENSOSIG00000005881)	ENSOSIG00000005884	nudt8 (ENSOSIG00000005885)	ENSOSIG00000005887	zgc:162193 (ENSOSIG00000005890)	SLC25A36 (ENSOSIG00000005892) #22	spsb4a (ENSOSIG00000005910) #23	CLSTN2 (ENSOSIG00000005916) #24
Ovalentaria_B	ANCESTRAL SPECIES	11	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Cichlidae	ANCESTRAL SPECIES	33	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.b #35	ENSGT00950000183136.b.b.d.b #35	ENSGT00950000183136.b.b.d.a.a.a #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	22	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.b #35	ENSGT00950000183136.b.b.d.a.a.b.a #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	25	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.b #35	ENSGT00950000183136.b.b.d.a.a.b.a #35
Haplochromini	ANCESTRAL SPECIES	35	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT01100000263520.a.b.a.a.a.b.a.b.c.d.a.a.a	ENSGT00940000154907.a.a.x.b	ENSGT00970000193449	ENSGT00950000183014.f.a	ENSGT00940000162403	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.a.a.b #35	ENSGT00950000183136.b.b.d.a.a.a.b #35
Burton s mouthbrooder	MODERN SPECIES	349							kcne4 (ENSHBUG00000022240) #13	ENSHBUG00000022286 #14	ENSHBUG00000022296 #16	farsb (ENSHBUG00000022379) #15	SGPP2 (ENSHBUG00000022394) #17	ENSHBUG00000022407 #18	pax3b (ENSHBUG00000022451) #19	epha4a (ENSHBUG00000022511) #20	pxylp1 (ENSHBUG00000022527) #21	SLC25A36 (ENSHBUG00000022561) #22	spsb4a (ENSHBUG00000022597) #23	ENSHBUG00000022617	CLSTN2 (ENSHBUG00000022673) #24	lpar5b (ENSHBUG00000022688) #25	rbp2a (ENSHBUG00000022702) #26	COPB2 (ENSHBUG00000022803) #27	mrps22 (ENSHBUG00000022826) #28	PIK3CB (ENSHBUG00000023142) #29	PER2 (ENSHBUG00000000709) #30	her13 (ENSHBUG00000023176) #31	her8.2 (ENSHBUG00000023184) #32	ENSHBUG00000023216 #33	ITM2C (ENSHBUG00000023261) #34	lpar5b (ENSHBUG00000023274) #35	lpar5b (ENSHBUG00000023292) #35
Haplochromini_A	ANCESTRAL SPECIES	40	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.a #35	ENSGT00950000183136.b.b.d.b #35
P. nyererei	MODERN SPECIES	378	wdfy1 (ENSPNYG00000011057) #10	dhrs12la (ENSPNYG00000011099) #11	AP1S3 (ENSPNYG00000011149)	ENSPNYG00000011372 #12	kcne4 (ENSPNYG00000011382) #13	acsl3a (ENSPNYG00000011402) #14	farsb (ENSPNYG00000011433) #15	ENSPNYG00000011468	ENSPNYG00000011481 #16	SGPP2 (ENSPNYG00000011492) #17	ENSPNYG00000011511 #18	pax3b (ENSPNYG00000011527) #19	ENSPNYG00000011554	epha4a (ENSPNYG00000011571) #20	pxylp1 (ENSPNYG00000011653) #21	SLC25A36 (ENSPNYG00000011731) #22	spsb4a (ENSPNYG00000011766) #23	CLSTN2 (ENSPNYG00000011806) #24	lpar5b (ENSPNYG00000011904) #25	rbp2a (ENSPNYG00000011924) #26	COPB2 (ENSPNYG00000011944) #27	mrps22 (ENSPNYG00000011985) #28	foxl2b (ENSPNYG00000012072)	PIK3CB (ENSPNYG00000012104) #29	PER2 (ENSPNYG00000012204) #30	her13 (ENSPNYG00000012240) #31	her8.2 (ENSPNYG00000012263) #32	ENSPNYG00000012316 #33	ITM2C (ENSPNYG00000012355) #34	lpar5b (ENSPNYG00000012388) #35
Haplochromini_B	ANCESTRAL SPECIES	9	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.a.a.a.a.a #35	ENSGT00950000183136.b.b.d.a.a.b.a #35	ENSGT00950000183136.b.b.d.b.a.a #35
Eastern happy	MODERN SPECIES	5	dhrs12la (ENSACLG00000014210) #11	ENSACLG00000014191 #12	AP1S3 (ENSACLG00000014183)	kcne4 (ENSACLG00000014128) #13	acsl3a (ENSACLG00000014060) #14	ENSACLG00000014051 #16	farsb (ENSACLG00000013951) #15	SGPP2 (ENSACLG00000013928) #17	ENSACLG00000013923 #18	pax3b (ENSACLG00000013881) #19	ENSACLG00000013809	epha4a (ENSACLG00000013751) #20	ENSACLG00000013740	ENSACLG00000013580	pxylp1 (ENSACLG00000013559) #21	SLC25A36 (ENSACLG00000013526) #22	spsb4a (ENSACLG00000013515) #23	ENSACLG00000013213	ENSACLG00000013208	ENSACLG00000013193	CLSTN2 (ENSACLG00000013110) #24	lpar5b (ENSACLG00000012853) #25	rbp2a (ENSACLG00000012843) #26	COPB2 (ENSACLG00000012761) #27	mrps22 (ENSACLG00000012727) #28	PIK3CB (ENSACLG00000012502) #29	PER2 (ENSACLG00000012344) #30	her13 (ENSACLG00000012297) #31	her8.2 (ENSACLG00000012275) #32	ENSACLG00000012262 #33	ITM2C (ENSACLG00000012210) #34
Zebra mbuna	MODERN SPECIES	1096	ENSMZEG00005004351	gemin4 (ENSMZEG00005004438)	TLCD3A (ENSMZEG00005004444)	usp2a (ENSMZEG00005004453)	TBCEL (ENSMZEG00005004478)	kcne4 (ENSMZEG00005004495) #13	ENSMZEG00005004509 #14	farsb (ENSMZEG00005004544) #15	ENSMZEG00005004588	ENSMZEG00005004594 #16	SGPP2 (ENSMZEG00005004600) #17	ENSMZEG00005004622 #18	pax3b (ENSMZEG00005004628) #19	epha4a (ENSMZEG00005004684) #20	pxylp1 (ENSMZEG00005004789) #21	SLC25A36 (ENSMZEG00005004803) #22	spsb4a (ENSMZEG00005004837) #23	ENSMZEG00005004855	CLSTN2 (ENSMZEG00005004867) #24	ENSMZEG00005004907 #25	rbp2a (ENSMZEG00005004916) #26	COPB2 (ENSMZEG00005004942) #27	mrps22 (ENSMZEG00005005002) #28	foxl2a (ENSMZEG00005005026)	nop53 (ENSMZEG00005005033)	ENSMZEG00005005051	ENSMZEG00005005059	psma6l (ENSMZEG00005005071)	ENSMZEG00005005107	sars2 (ENSMZEG00005005189)	si:dkey-260j18.2 (ENSMZEG00005005293)
Lyretail cichlid	MODERN SPECIES	367	prss16 (ENSNBRG00000003861) #8	serpine2 (ENSNBRG00000003846) #9	wdfy1 (ENSNBRG00000003804) #10	AP1S3 (ENSNBRG00000003658)	ENSNBRG00000003634 #12	kcne4 (ENSNBRG00000003631) #13	acsl3a (ENSNBRG00000003327) #14	ENSNBRG00000003270 #16	farsb (ENSNBRG00000003198) #15	SGPP2 (ENSNBRG00000003149) #17	ENSNBRG00000003132 #18	pax3b (ENSNBRG00000003096) #19	epha4a (ENSNBRG00000003033) #20	pxylp1 (ENSNBRG00000002984) #21	ENSNBRG00000002963	SLC25A36 (ENSNBRG00000002942) #22	CLSTN2 (ENSNBRG00000002891) #24	lpar5b (ENSNBRG00000002874) #25	rbp2a (ENSNBRG00000002854) #26	COPB2 (ENSNBRG00000002788) #27	mrps22 (ENSNBRG00000002593) #28	PIK3CB (ENSNBRG00000002386) #29	PER2 (ENSNBRG00000002361) #30	her13 (ENSNBRG00000002345) #31	her8.2 (ENSNBRG00000002319) #32	ENSNBRG00000002297 #33	ITM2C (ENSNBRG00000002259) #34	lpar5b (ENSNBRG00000002226) #35	lpar5b (ENSNBRG00000002212) #35	ENSNBRG00000002192 #36	meis3 (ENSNBRG00000002156) #37
Nile tilapia	MODERN SPECIES	5	psmd2 (ENSONIG00000010770) #7	prss16 (ENSONIG00000010768) #8	serpine2 (ENSONIG00000010765) #9	wdfy1 (ENSONIG00000014648) #10	dhrs12la (ENSONIG00000014649) #11	ENSONIG00000014647 #12	kcne4 (ENSONIG00000014646) #13	acsl3a (ENSONIG00000014644) #14	farsb (ENSONIG00000014639) #15	ENSONIG00000036757 #16	SGPP2 (ENSONIG00000014638) #17	ENSONIG00000037185 #18	pax3b (ENSONIG00000014632) #19	epha4a (ENSONIG00000014623) #20	pxylp1 (ENSONIG00000030369) #21	SLC25A36 (ENSONIG00000014617) #22	spsb4a (ENSONIG00000014616) #23	CLSTN2 (ENSONIG00000014608) #24	ENSONIG00000034460	lpar5b (ENSONIG00000020974) #25	rbp2a (ENSONIG00000014606) #26	COPB2 (ENSONIG00000014597) #27	mrps22 (ENSONIG00000014596) #28	ENSONIG00000033377	PIK3CB (ENSONIG00000007924) #29	PER2 (ENSONIG00000007937) #30	ENSONIG00000039254	her13 (ENSONIG00000035460) #31	her8.2 (ENSONIG00000007948) #32	ENSONIG00000007949 #33	ITM2C (ENSONIG00000007951) #34
Midas cichlid	MODERN SPECIES	1208															ENSACIG00000007678	SLC25A36 (ENSACIG00000007655) #22	spsb4a (ENSACIG00000007648) #23	CLSTN2 (ENSACIG00000007501) #24
Pomacentridae	ANCESTRAL SPECIES	5	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Bicolor damselfish	MODERN SPECIES	1489															pxylp1 (ENSSPAG00000017892) #21	SLC25A36 (ENSSPAG00000017838) #22	spsb4a (ENSSPAG00000017828) #23
Pomacentridae_A	ANCESTRAL SPECIES	4	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d #35	ENSGT00940000160281 #36	ENSGT00940000161057 #37
Amphiprion	ANCESTRAL SPECIES	6	ENSGT00940000164087 #8	ENSGT00940000158424 #9	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00530000063489.a #15	ENSGT00940000176917 #16	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00970000193381.a.a.a.a.b.b.a.b.f.a.a.a	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183136.b.b.c #25	ENSGT00940000160165.a.b #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b.d.c #35	ENSGT01040000240444.A.a.a.b
Orange clownfish	MODERN SPECIES	23	psmd2 (ENSAPEG00000001498) #7	prss16 (ENSAPEG00000001482) #8	serpine2 (ENSAPEG00000001453) #9	wdfy1 (ENSAPEG00000001381) #10	dhrs12la (ENSAPEG00000001325) #11	SCG2 (ENSAPEG00000001314) #12	AP1S3 (ENSAPEG00000001305)	kcne4 (ENSAPEG00000001287) #13	acsl3a (ENSAPEG00000001224) #14	farsb (ENSAPEG00000001153) #15	SGPP2 (ENSAPEG00000001108) #17	ENSAPEG00000001098 #18	pax3b (ENSAPEG00000001057) #19	epha4a (ENSAPEG00000000975) #20	pxylp1 (ENSAPEG00000000923) #21	SLC25A36 (ENSAPEG00000000858) #22	spsb4a (ENSAPEG00000000845) #23	ENSAPEG00000000779	CLSTN2 (ENSAPEG00000000726) #24	lpar5b (ENSAPEG00000000689) #25	rbp2a (ENSAPEG00000000675) #26	ENSAPEG00000000653 #27	COPB2 (ENSAPEG00000000555) #27	mrps22 (ENSAPEG00000000548) #28	PIK3CB (ENSAPEG00000000351) #29	PER2 (ENSAPEG00000000330) #30	her13 (ENSAPEG00000024634) #31	her8.2 (ENSAPEG00000024633) #32	ENSAPEG00000024631	ENSAPEG00000024629	ENSAPEG00000024627
Clown anemonefish	MODERN SPECIES	2165															pxylp1 (ENSAOCG00000000768) #21	SLC25A36 (ENSAOCG00000012499) #22	spsb4a (ENSAOCG00000012541) #23	SLC4A1AP (ENSAOCG00000012568)	supt7l (ENSAOCG00000012589)
Spiny chromis	MODERN SPECIES	407															pxylp1 (ENSAPOG00000020055) #21	SLC25A36 (ENSAPOG00000020029) #22	spsb4a (ENSAPOG00000019979) #23
Tiger tail seahorse	MODERN SPECIES	517	wdfy1 (ENSHCOG00000016262) #10	dhrs12la (ENSHCOG00000016289) #11	AP1S3 (ENSHCOG00000016296)	ENSHCOG00000016302 #12	kcne4 (ENSHCOG00000016311) #13	ENSHCOG00000016330	acsl3a (ENSHCOG00000016430) #14	farsb (ENSHCOG00000016462) #15	ENSHCOG00000016479 #16	ENSHCOG00000016512	SGPP2 (ENSHCOG00000016537) #17	ENSHCOG00000016554 #18	pax3b (ENSHCOG00000016573) #19	epha4a (ENSHCOG00000016610) #20	pxylp1 (ENSHCOG00000016625) #21	SLC25A36 (ENSHCOG00000016644) #22	spsb4a (ENSHCOG00000016659) #23	CLSTN2 (ENSHCOG00000016690) #24	rbp2a (ENSHCOG00000016710) #26	mrps22 (ENSHCOG00000016713) #28	foxl2b (ENSHCOG00000016718)	PIK3CB (ENSHCOG00000016759) #29	PER2 (ENSHCOG00000016767) #30	her13 (ENSHCOG00000016789) #31	her8.2 (ENSHCOG00000016804) #32	ENSHCOG00000016829 #33	ITM2C (ENSHCOG00000016875) #34	meis3 (ENSHCOG00000016923) #37	ENSHCOG00000016940	sirt2 (ENSHCOG00000016976)	dmac2 (ENSHCOG00000017106)
Pinecone sodierfish	MODERN SPECIES	4	psmd2 (ENSMMDG00005019038) #7	prss16 (ENSMMDG00005019100) #8	serpine2 (ENSMMDG00005019108) #9	wdfy1 (ENSMMDG00005019117) #10	dhrs12la (ENSMMDG00005019127) #11	ENSMMDG00005019130 #12	kcne4 (ENSMMDG00005019132) #13	acsl3a (ENSMMDG00005019162) #14	farsb (ENSMMDG00005001237) #15	ENSMMDG00005001539 #16	SGPP2 (ENSMMDG00005001557) #17	ENSMMDG00005001621 #18	pax3b (ENSMMDG00005001645) #19	epha4a (ENSMMDG00005001794) #20	pxylp1 (ENSMMDG00005003638) #21	SLC25A36 (ENSMMDG00005003650) #22	spsb4a (ENSMMDG00005003678) #23	CLSTN2 (ENSMMDG00005003696) #24	lpar5b (ENSMMDG00005003739) #35	rbp2a (ENSMMDG00005003743) #26	COPB2 (ENSMMDG00005003752) #27	mrps22 (ENSMMDG00005003761) #28	PIK3CB (ENSMMDG00005003879) #29	ENSMMDG00005007371 #30	her13 (ENSMMDG00005008258) #31	her8.2 (ENSMMDG00005008260) #32	ENSMMDG00005008264 #33	ITM2C (ENSMMDG00005008270) #34	lpar5b (ENSMMDG00005008271) #35	ENSMMDG00005008273 #36	ENSMMDG00005008275 #36
Cod	MODERN SPECIES	7	ENSGMOG00000034276	ENSGMOG00000008966	ENSGMOG00000029247	kcnj13 (ENSGMOG00000030777)	ENSGMOG00000009010	ENSGMOG00000009019	tpst1 (ENSGMOG00000009059)	tnfaip1 (ENSGMOG00000009025)	ENSGMOG00000009038	aldh3a2a (ENSGMOG00000009087)	ENSGMOG00000030909	ENSGMOG00000014227 #20	ENSGMOG00000024699	ENSGMOG00000023021	pxylp1 (ENSGMOG00000025794) #21	ENSGMOG00000001882 #22	ENSGMOG00000008804 #23	ENSGMOG00000008822 #24	ENSGMOG00000028813	ENSGMOG00000022668 #35	RBP2 (ENSGMOG00000013916) #26	COPB2 (ENSGMOG00000013927) #27	MRPS22 (ENSGMOG00000013972) #28	PIK3CB (ENSGMOG00000013996) #29	ENSGMOG00000014046 #30	ENSGMOG00000027451 #31	ENSGMOG00000028584	ENSGMOG00000033018 #32	ENSGMOG00000029526 #33	ENSGMOG00000014166 #35	ENSGMOG00000010627 #37
Protacanthopterygii	ANCESTRAL SPECIES	15	ENSGT00940000157731 #10	ENSGT00940000165979 #11	ENSGT00970000193372.b.a.b	ENSGT00390000010895.a #12	ENSGT00390000013776 #13	ENSGT00940000155954.b #14	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.j.a #20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.b #23	ENSGT00530000064220	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00940000160165.a #26	ENSGT00900000141083.c.b #27	ENSGT00390000006095 #28	ENSGT00940000162075	ENSGT00940000157522 #29	ENSGT00940000156342.d #30	ENSGT00940000161398.e #31	ENSGT00940000164578.a.a #32	ENSGT00390000004360.a.a #33	ENSGT00950000183115.a.a.a #34	ENSGT00950000183136.b.b #35	ENSGT01040000240444.A.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	588															ENSGT00390000016324.n.a #21	ENSGT00940000154369.g.b.a #22	ENSGT01030000234629.C.b.a #23	ENSGT00530000064220	ENSGT00950000183086.a.a.b.h.a.b.b #24	ENSGT00950000183086.a.a.b.h.a.a #24	ENSGT00940000160165.a.c #26	ENSGT00900000141083.c.b.c #27	ENSGT00390000006095.d #28	ENSGT00940000162075.db.b.a	ENSGT00940000157522.d.b #29	ENSGT00940000157522.d.a.b #29	ENSGT00940000161398.e.a #31	ENSGT00940000164578.a.a.a #32	ENSGT00390000004360.a.a.b #33	ENSGT00950000183115.a.a.a.b #34
Huchen	MODERN SPECIES	1548															pxylp1 (ENSHHUG00000036325) #21	SLC25A36 (ENSHHUG00000036314) #22	spsb4a (ENSHHUG00000036312) #23	ENSHHUG00000036301 #24
Salmoninae_a	ANCESTRAL SPECIES	3	ENSGT00940000164087 #8	ENSGT00940000158424.c #9	ENSGT00940000157731.e.a #10	ENSGT00940000165979.a #11	ENSGT00940000157731.f.a #10	ENSGT00390000010895.a.a #12	ENSGT00390000013776.d #13	ENSGT00940000155954.b.a #14	ENSGT01030000234582.e.a.wc.b	ENSGT00530000063489.a.c #15	ENSGT00940000159500.j #17	ENSGT00940000166595.b.d #18	ENSGT00940000156504.i.a.f #19	ENSGT00940000156948.j.a.b #20	ENSGT00390000016324.m.a #21	ENSGT00940000154369.g.b.a #22	ENSGT01030000234629.C.b.a #23	ENSGT00530000064220.a	ENSGT00950000183086.a.a.b.h.a.a #24	ENSGT00940000160165.a.c #26	ENSGT00900000141083.c.b.c #27	ENSGT00390000006095.d #28	ENSGT00940000162075.db.b.a	ENSGT00940000157522.d.b #29	ENSGT00940000161398.e.a #31	ENSGT00940000164578.a.a.a #32	ENSGT00390000004360.a.a.b #33	ENSGT00950000183115.a.a.a.b #34	ENSGT00950000183136.b.b.i.b #35	ENSGT01040000240444.A.b.b.e.b	ENSGT01030000234571.b.b.a.a.a.b
Oncorhynchus	ANCESTRAL SPECIES	14	ENSGT00940000153386.B.i #7	ENSGT00940000164087 #8	ENSGT00940000158424.c #9	ENSGT00940000165979.a #11	ENSGT00940000157731.f.a #10	ENSGT00390000010895.a.a #12	ENSGT00390000013776.d #13	ENSGT00940000155954.b.a #14	ENSGT01030000234582.e.a.wc.b	ENSGT00530000063489.a.c #15	ENSGT00940000159500.j #17	ENSGT00940000166595.b.d #18	ENSGT00940000156504.i.a.f #19	ENSGT00940000156948.j.a.b #20	ENSGT00390000016324.m.a #21	ENSGT00940000154369.g.b.a #22	ENSGT01030000234629.C.b.a #23	ENSGT00530000064220.a	ENSGT00950000183086.a.a.b.h.a.a #24	ENSGT00940000160165.a.c #26	ENSGT00900000141083.c.b.c #27	ENSGT00940000157522.d.a.a #29	ENSGT00940000161398.e.a #31	ENSGT00940000164578.a.a.a #32	ENSGT00390000004360.a.a.b #33	ENSGT00950000183115.a.a.a.b #34	ENSGT00950000183136.b.b.i.b #35	ENSGT01040000240444.A.b.b.e.b	ENSGT01030000234571.b.b.a.a.a.b	ENSGT00390000012058.c.a.d	ENSGT00990000203615.b.a.b.f
Oncorhynchus_a	ANCESTRAL SPECIES	32	ENSGT00940000153386.B.i #7	ENSGT00940000164087.e #8	ENSGT00940000158424.c #9	ENSGT00940000165979.a #11	ENSGT00940000157731.f.a #10	ENSGT00390000010895.a.a #12	ENSGT00390000013776.d #13	ENSGT00940000155954.b.a #14	ENSGT01030000234582.e.a.wc.b	ENSGT00530000063489.a.c #15	ENSGT00940000159500.j #17	ENSGT00940000166595.b.d #18	ENSGT00940000156504.i.a.f #19	ENSGT00940000156948.j.a.b #20	ENSGT00390000016324.m.a #21	ENSGT00940000154369.g.b.a #22	ENSGT01030000234629.C.b.a #23	ENSGT00530000064220.a	ENSGT00950000183086.a.a.b.h.a.a #24	ENSGT00940000160165.a.c #26	ENSGT00900000141083.c.b.c #27	ENSGT00940000157522.d.a.a #29	ENSGT00940000161398.e.a #31	ENSGT00940000164578.a.a.a #32	ENSGT00390000004360.a.a.b #33	ENSGT00950000183115.a.a.a.b #34	ENSGT00950000183136.b.b.i.b #35	ENSGT01040000240444.A.b.b.e.b	ENSGT01030000234571.b.b.a.a.a.b	ENSGT00390000012058.c.a.d	ENSGT00990000203615.b.a.b.f
Coho salmon	MODERN SPECIES	6	prss16 (ENSOKIG00005033142) #8	serpine2 (ENSOKIG00005033223) #9	wdfy1 (ENSOKIG00005033259) #10	dhrs12la (ENSOKIG00005033327) #11	ENSOKIG00005033654 #12	kcne4 (ENSOKIG00005033667) #13	acsl3a (ENSOKIG00005033681) #14	ENSOKIG00005033822	MOGAT1 (ENSOKIG00005033840)	farsb (ENSOKIG00005033852) #15	SGPP2 (ENSOKIG00005033954) #17	ENSOKIG00005033983 #18	pax3b (ENSOKIG00005033994) #19	EPHA4 (ENSOKIG00005034081) #20	pxylp1 (ENSOKIG00005034194) #21	SLC25A36 (ENSOKIG00005034220) #22	spsb4a (ENSOKIG00005034305) #23	ENSOKIG00005034314	CLSTN2 (ENSOKIG00005034370) #24	RBP2 (ENSOKIG00005034789) #26	ENSOKIG00005034810	COPB2 (ENSOKIG00005034824) #27	ENSOKIG00005034947	ENSOKIG00005034995 #28	ENSOKIG00005035105	PIK3CB (ENSOKIG00005035228) #29	her13 (ENSOKIG00005036977) #31	her8.2 (ENSOKIG00005036998) #32	ENSOKIG00005037011 #33	ITM2C (ENSOKIG00005037042) #34	lpar5b (ENSOKIG00005037066) #35
Chinook salmon	MODERN SPECIES	4	smc4 (ENSOTSG00005033673)	ENSOTSG00005033659	ENSOTSG00005033658 #29	HES6 (ENSOTSG00005033657) #31	her8.2 (ENSOTSG00005033653) #32	ENSOTSG00005033646 #33	ITM2C (ENSOTSG00005033643) #34	lpar5b (ENSOTSG00005033642) #35	gpr55a (ENSOTSG00005033641)	NGEF (ENSOTSG00005033262)	efhd1 (ENSOTSG00005033260)	kcnj13 (ENSOTSG00005033259)	GAL3ST2 (ENSOTSG00005033258)	dok1b (ENSOTSG00005033257)	ENSOTSG00005033255	SLC25A36 (ENSOTSG00005033254) #22	spsb4a (ENSOTSG00005033252) #23	ENSOTSG00005033250 #24	ENSOTSG00005033247	ENSOTSG00005033242	chrd (ENSOTSG00005033240)	alp3 (ENSOTSG00005037268)	ENSOTSG00005037262	PSMD2 (ENSOTSG00005037069) #7	prss16 (ENSOTSG00005037067) #8	dhrs12la (ENSOTSG00005037066) #11	wdfy1 (ENSOTSG00005036581) #10	SCG2 (ENSOTSG00005036580) #12	kcne4 (ENSOTSG00005036579) #13	acsl3a (ENSOTSG00005036578) #14	MOGAT1 (ENSOTSG00005036575)
Rainbow trout	MODERN SPECIES	19	wdfy1 (ENSOMYG00000041744) #10	dhrs12la (ENSOMYG00000041779) #11	ENSOMYG00000067981	ENSOMYG00000053039 #12	kcne4 (ENSOMYG00000045256) #13	acsl3a (ENSOMYG00000062951) #14	MOGAT1 (ENSOMYG00000045261)	farsb (ENSOMYG00000045269) #15	ENSOMYG00000075686	ENSOMYG00000045286	SGPP2 (ENSOMYG00000045289) #17	ENSOMYG00000045293 #18	pax3b (ENSOMYG00000045319) #19	EPHA4 (ENSOMYG00000045497) #20	pxylp1 (ENSOMYG00000045548) #21	ENSOMYG00000045536 #22	SPSB4 (ENSOMYG00000045534) #23	ENSOMYG00000045523 #24	ENSOMYG00000037636 #26	ENSOMYG00000037604 #27	ENSOMYG00000070221	ENSOMYG00000060003	ENSOMYG00000037526	ENSOMYG00000064208	ENSOMYG00000037470 #29	ENSOMYG00000058394	ENSOMYG00000037364 #31	ENSOMYG00000037359 #32	ENSOMYG00000037347 #33	ENSOMYG00000037339 #34	lpar5b (ENSOMYG00000037327) #35
Salmo	ANCESTRAL SPECIES	7	ENSGT00940000164087 #8	ENSGT00940000158424.c #9	ENSGT00940000157731.e.a #10	ENSGT00940000165979.a #11	ENSGT00970000193372.b.a.b.a	ENSGT00390000010895.a.a #12	ENSGT00390000013776.d #13	ENSGT00940000155954.b.a #14	ENSGT01030000234582.e.a.wc.b	ENSGT00530000063489.a.c #15	ENSGT00940000159500.j #17	ENSGT00940000166595.b.d #18	ENSGT00940000156504.i.a.f #19	ENSGT00940000156948.j.a.b #20	ENSGT00390000016324.m.a #21	ENSGT00940000154369.g.b.a #22	ENSGT01030000234629.C.b.a #23	ENSGT00950000183086.a.a.b.h.a.a #24	ENSGT00940000160165.a.c #26	ENSGT00900000141083.c.b.c #27	ENSGT00390000006095.d #28	ENSGT00940000162075.db.b.a	ENSGT00940000157522.d.b #29	ENSGT00940000161398.e.a #31	ENSGT00940000164578.a.a.a #32	ENSGT00390000004360.a.a.b #33	ENSGT00950000183115.a.a.a.b #34	ENSGT00950000183136.b.b.i.b #35	ENSGT01040000240444.A.b.b.e.b	ENSGT01030000234571.b.b.a.a.a.b	ENSGT00390000012058.c.a.d
Atlantic salmon	MODERN SPECIES	12	wdfy1 (ENSSSAG00000078262) #10	dhrs12la (ENSSSAG00000078330) #11	AP1S3 (ENSSSAG00000106401)	ENSSSAG00000097433 #12	kcne4 (ENSSSAG00000092694) #13	acsl3a (ENSSSAG00000090701) #14	MOGAT1 (ENSSSAG00000006217)	farsb (ENSSSAG00000006297) #15	SGPP2 (ENSSSAG00000006428) #17	ENSSSAG00000087087 #18	pax3b (ENSSSAG00000006484) #19	EPHA4 (ENSSSAG00000006756) #20	ENSSSAG00000096046	ENSSSAG00000111346	acpl2 (ENSSSAG00000067856) #21	ENSSSAG00000068023 #22	ENSSSAG00000068016 #23	ENSSSAG00000111589 #24	ENSSSAG00000107920	COPB2 (ENSSSAG00000054694) #27	mrps22 (ENSSSAG00000085488) #28	ENSSSAG00000120199	PIK3CB (ENSSSAG00000044156) #29	HES6 (ENSSSAG00000043968) #31	ENSSSAG00000043963 #32	ENSSSAG00000043918 #33	ENSSSAG00000043844 #34	gpr55a (ENSSSAG00000087199)	ngef (ENSSSAG00000043373)	ENSSSAG00000087441	ENSSSAG00000119253
River trout	MODERN SPECIES	18	prss16 (ENSSTUG00000016559) #8	serpine2 (ENSSTUG00000016576) #9	wdfy1 (ENSSTUG00000016617) #10	dhrs12la (ENSSTUG00000016709) #11	SCG2 (ENSSTUG00000016849) #12	kcne4 (ENSSTUG00000016852) #13	acsl3a (ENSSTUG00000016868) #14	ENSSTUG00000017223	ENSSTUG00000017231	farsb (ENSSTUG00000017360) #15	ENSSTUG00000017986	ENSSTUG00000017993 #18	pax3b (ENSSTUG00000018005) #19	EPHA4 (ENSSTUG00000018120) #20	pxylp1 (ENSSTUG00000018182) #21	SLC25A36 (ENSSTUG00000018198) #22	spsb4a (ENSSTUG00000018223) #23	ENSSTUG00000018228 #24	RBP2 (ENSSTUG00000018242) #26	COPB2 (ENSSTUG00000018264) #27	ENSSTUG00000018500	mrps22 (ENSSTUG00000018509) #28	ENSSTUG00000018557	PIK3CB (ENSSTUG00000018608) #29	ENSSTUG00000019232	her13 (ENSSTUG00000019266) #31	her8.2 (ENSSTUG00000019275) #32	ENSSTUG00000019280 #33	ITM2C (ENSSTUG00000019293) #34	lpar5b (ENSSTUG00000019342) #35	gpr55a (ENSSTUG00000019362)
Salmoninae	ANCESTRAL SPECIES	493	ENSGT00390000010895.a.b #12	ENSGT00390000013776.c #13	ENSGT00940000155954.b.b.a.a #14	ENSGT01030000234582.e.a.wc.a	ENSGT00530000063489.a.d #15	ENSGT00940000159500.i #17	ENSGT01030000234582.e.a.wc.b	ENSGT00530000063489.a.c #15	ENSGT00940000159500.j #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a.f #19	ENSGT00940000156948.j.a.b #20	ENSGT00390000016324.m #21	ENSGT00940000156504.i.a.e #19	ENSGT00940000156948.j.a.a #20	ENSGT00940000154369.g.b.b #22	ENSGT01030000234629.C.b.b #23
Huchen	MODERN SPECIES	4417																SLC25A36 (ENSHHUG00000044269) #22	spsb4a (ENSHHUG00000044267) #23
Salmoninae_a	ANCESTRAL SPECIES	56	ENSGT00940000158424.d #9	ENSGT00940000157731.e.b #10	ENSGT00940000165979.b #11	ENSGT00940000157731.f.b #10	ENSGT00390000010895.a.b #12	ENSGT00390000013776.c #13	ENSGT00940000155954.b.b.b #14	ENSGT00940000155954.b.b.a.a #14	ENSGT01030000234582.e.a.wc.a	ENSGT00530000063489.a.d #15	ENSGT00940000159500.i #17	ENSGT00940000166595.b.c #18	ENSGT00940000156504.i.a.e #19	ENSGT00940000156948.j.a.a #20	ENSGT00390000016324.m.b #21	ENSGT00940000154369.g.b.b #22	ENSGT01030000234629.C.b.b #23	ENSGT00530000064220.b	ENSGT00950000183086.a.a.b.h.a.b.b #24	ENSGT00940000160165.a.d #26	ENSGT00900000141083.c.b.d #27	ENSGT00390000006095.c #28	ENSGT00940000162075.db.b.b	ENSGT00940000157522.c #29	ENSGT00940000161398.e.b #31	ENSGT00940000164578.a.a.b #32	ENSGT00390000004360.a.a.a #33	ENSGT00950000183115.a.a.a.a #34	ENSGT00950000183136.b.b.i.a #35	ENSGT01040000240444.A.b.b.e.a	ENSGT01030000234571.b.b.a.a.a.a
Oncorhynchus	ANCESTRAL SPECIES	57	ENSGT00940000154648.a.b.b	ENSGT00940000153386.B.j #7	ENSGT00940000158424.d #9	ENSGT00940000165979.b #11	ENSGT00940000157731.f.b #10	ENSGT00390000010895.a.b #12	ENSGT00390000013776.c #13	ENSGT00940000155954.b.b.b #14	ENSGT01030000234582.e.a.wc.a	ENSGT00530000063489.a.d #15	ENSGT00940000159500.i #17	ENSGT00940000166595.b.c #18	ENSGT00940000156504.i.a.e #19	ENSGT00940000156948.j.a.a #20	ENSGT00390000016324.m.b #21	ENSGT00940000154369.g.b.b #22	ENSGT01030000234629.C.b.b #23	ENSGT00530000064220.b	ENSGT00950000183086.a.a.b.h.a.b.b #24	ENSGT00940000160165.a.d #26	ENSGT00900000141083.c.b.d #27	ENSGT00390000006095.c #28	ENSGT00940000157522.c #29	ENSGT00940000161398.e.b #31	ENSGT00940000164578.a.a.b #32	ENSGT00390000004360.a.a.a #33	ENSGT00950000183115.a.a.a.a #34	ENSGT01040000240444.A.b.b.e.a	ENSGT01030000234571.b.b.a.a.a.a	ENSGT00390000012058.c.a.c	ENSGT00990000203615.b.a.b.e
Rainbow trout	MODERN SPECIES	16	serpine2 (ENSOMYG00000042953) #9	wdfy1 (ENSOMYG00000042987) #10	dhrs12la (ENSOMYG00000043025) #11	ENSOMYG00000043148 #12	ENSOMYG00000043153 #13	acsl3a (ENSOMYG00000051839) #14	MOGAT1 (ENSOMYG00000043158)	farsb (ENSOMYG00000043179) #15	SGPP2 (ENSOMYG00000043206) #17	ENSOMYG00000043211 #18	pax3b (ENSOMYG00000043216) #19	EPHA4 (ENSOMYG00000043230) #20	ENSOMYG00000068412	ENSOMYG00000055905	ENSOMYG00000043266 #23	ENSOMYG00000043294 #22	ENSOMYG00000043246	ENSOMYG00000043305 #24	rbp2a (ENSOMYG00000043708) #26	COPB2 (ENSOMYG00000062074) #27	MRPS22 (ENSOMYG00000043703) #28	PIK3CB (ENSOMYG00000043608) #29	ENSOMYG00000043546 #31	ENSOMYG00000043536 #33	ENSOMYG00000043529 #34	gpr55a (ENSOMYG00000043522)	ENSOMYG00000043509	efhd1 (ENSOMYG00000043478)	kcnj13 (ENSOMYG00000043477)	ENSOMYG00000064329	ENSOMYG00000071106
Oncorhynchus_a	ANCESTRAL SPECIES	78	ENSGT00940000154648.a.b.b	ENSGT00940000153386.B.j #7	ENSGT00940000158424.d #9	ENSGT00940000165979.b #11	ENSGT00940000157731.f.b #10	ENSGT00390000010895.a.b #12	ENSGT00390000013776.c #13	ENSGT00940000155954.b.b.b #14	ENSGT01030000234582.e.a.wc.a	ENSGT00530000063489.a.d #15	ENSGT00940000159500.i #17	ENSGT00940000166595.b.c #18	ENSGT00940000156504.i.a.e #19	ENSGT00940000156948.j.a.a #20	ENSGT00390000016324.m.b #21	ENSGT00940000154369.g.b.b #22	ENSGT01030000234629.C.b.b #23	ENSGT00530000064220.b	ENSGT00950000183086.a.a.b.h.a.b.b #24	ENSGT00940000160165.a.d #26	ENSGT00900000141083.c.b.d #27	ENSGT00390000006095.c #28	ENSGT00940000157522.c #29	ENSGT00940000161398.e.b #31	ENSGT00940000164578.a.a.b #32	ENSGT00390000004360.a.a.a #33	ENSGT00950000183115.a.a.a.a #34	ENSGT01040000240444.A.b.b.e.a	ENSGT01030000234571.b.b.a.a.a.a	ENSGT00390000012058.c.a.c	ENSGT00990000203615.b.a.b.e
Coho salmon	MODERN SPECIES	9	PSMD2 (ENSOKIG00005024834) #7	SERPINE2 (ENSOKIG00005024649) #9	dhrs12la (ENSOKIG00005024421) #11	wdfy1 (ENSOKIG00005024308) #10	SCG2 (ENSOKIG00005024280) #12	ENSOKIG00005024276	kcne4 (ENSOKIG00005024271) #13	acsl3a (ENSOKIG00005023041) #14	MOGAT1 (ENSOKIG00005022988)	farsb (ENSOKIG00005022847) #15	SGPP2 (ENSOKIG00005022801) #17	ENSOKIG00005022784 #18	pax3b (ENSOKIG00005022662) #19	EPHA4 (ENSOKIG00005021217) #20	pxylp1 (ENSOKIG00005021145) #21	SLC25A36 (ENSOKIG00005021117) #22	SPSB4 (ENSOKIG00005021110) #23	ENSOKIG00005021104	CLSTN2 (ENSOKIG00005020906) #24	rbp2a (ENSOKIG00005020847) #26	COPB2 (ENSOKIG00005020802) #27	mrps22 (ENSOKIG00005020794) #28	PIK3CB (ENSOKIG00005019301) #29	HES6 (ENSOKIG00005019217) #31	ENSOKIG00005019210 #32	ENSOKIG00005019198 #33	ITM2C (ENSOKIG00005019191) #34	gpr55a (ENSOKIG00005019189)	ENSOKIG00005019083	efhd1 (ENSOKIG00005019062)	kcnj13 (ENSOKIG00005019057)
Chinook salmon	MODERN SPECIES	5	COPB2 (ENSOTSG00005005339) #27	mrps22 (ENSOTSG00005005336) #28	PIK3CB (ENSOTSG00005005287) #29	ENSOTSG00005005274 #31	her8.2 (ENSOTSG00005005273) #32	ENSOTSG00005005271 #33	ITM2C (ENSOTSG00005005269) #34	gpr55a (ENSOTSG00005005266)	ENSOTSG00005004687	efhd1 (ENSOTSG00005004680)	kcnj13 (ENSOTSG00005004678)	GAL3ST2 (ENSOTSG00005004675)	hnrnpr (ENSOTSG00005004663)	SMCO4 (ENSOTSG00005004661)	ENSOTSG00005004660	SLC25A36 (ENSOTSG00005004658) #22	spsb4a (ENSOTSG00005004657) #23	ENSOTSG00005004656	ENSOTSG00005004655 #24	EPHA4 (ENSOTSG00005004652) #20	pax3b (ENSOTSG00005004639) #19	ENSOTSG00005004637 #18	ENSOTSG00005004636	ENSOTSG00005004635	SGPP2 (ENSOTSG00005004634) #17	farsb (ENSOTSG00005004507) #15	MOGAT1 (ENSOTSG00005004499)	ENSOTSG00005004498	SCG2 (ENSOTSG00005004497) #12	dhrs12la (ENSOTSG00005004480) #11	wdfy1 (ENSOTSG00005004479) #10
Salmo	ANCESTRAL SPECIES	18	ENSGT00940000153386.B.j #7	ENSGT00940000158424.d #9	ENSGT00940000157731.e.b #10	ENSGT00940000165979.b.a #11	ENSGT00970000193372.b.a.b.b	ENSGT00390000010895.a.b #12	ENSGT00390000013776.c #13	ENSGT00940000155954.b.b.a.a #14	ENSGT01030000234582.e.a.wc.a	ENSGT00530000063489.a.d #15	ENSGT00940000159500.i #17	ENSGT00940000166595.b.c #18	ENSGT00940000156504.i.a.e #19	ENSGT00940000156948.j.a.a #20	ENSGT00390000016324.m.b #21	ENSGT00940000154369.g.b.b #22	ENSGT01030000234629.C.b.b #23	ENSGT00530000064220.b	ENSGT00950000183086.a.a.b.h.a.b.b #24	ENSGT00940000160165.a.d #26	ENSGT00390000006095.c #28	ENSGT00940000162075.db.b.b	ENSGT00940000157522.c #29	ENSGT00940000161398.e.b #31	ENSGT00940000164578.a.a.b #32	ENSGT00390000004360.a.a.a #33	ENSGT00950000183115.a.a.a.a #34	ENSGT00950000183136.b.b.i.a #35	ENSGT01040000240444.A.b.b.e.a	ENSGT01030000234571.b.b.a.a.a.a	ENSGT00390000012058.c.a.c
River trout	MODERN SPECIES	4	PSMD2 (ENSSTUG00000003015) #7	serpine2 (ENSSTUG00000004095) #9	wdfy1 (ENSSTUG00000004442) #10	dhrs12la (ENSSTUG00000004618) #11	SCG2 (ENSSTUG00000004694) #12	kcne4 (ENSSTUG00000004697) #13	acsl3a (ENSSTUG00000004701) #14	MOGAT1 (ENSSTUG00000004706)	farsb (ENSSTUG00000004736) #15	SGPP2 (ENSSTUG00000004993) #17	ENSSTUG00000005010 #18	pax3b (ENSSTUG00000005031) #19	ENSSTUG00000005147	EPHA4 (ENSSTUG00000005206) #20	pxylp1 (ENSSTUG00000006679) #21	SLC25A36 (ENSSTUG00000006696) #22	spsb4a (ENSSTUG00000006771) #23	ENSSTUG00000006772	CLSTN2 (ENSSTUG00000006813) #24	rbp2a (ENSSTUG00000007216) #26	mrps22 (ENSSTUG00000007231) #28	ENSSTUG00000007276 #29	ENSSTUG00000008129	HES6 (ENSSTUG00000008183) #31	her8.2 (ENSSTUG00000008190) #32	ENSSTUG00000008198 #33	ITM2C (ENSSTUG00000008227) #34	lpar5b (ENSSTUG00000008234) #35	gpr55a (ENSSTUG00000008236)	ENSSTUG00000008240	efhd1 (ENSSTUG00000008303)
Atlantic salmon	MODERN SPECIES	28	serpine2 (ENSSSAG00000046301) #9	wdfy1 (ENSSSAG00000056785) #10	dhrs12la (ENSSSAG00000057066) #11	AP1S3 (ENSSSAG00000112646)	ENSSSAG00000101506 #12	kcne4 (ENSSSAG00000056752) #13	acsl3a (ENSSSAG00000068061) #14	mogt1 (ENSSSAG00000057167)	farsb (ENSSSAG00000057206) #15	SGPP2 (ENSSSAG00000057757) #17	ENSSSAG00000103189	ENSSSAG00000120692 #18	pax3b (ENSSSAG00000057843) #19	EPHA4 (ENSSSAG00000092983) #20	pxylp1 (ENSSSAG00000057141) #21	ENSSSAG00000101149 #22	SPSB4 (ENSSSAG00000057105) #23	ENSSSAG00000057097	CLSTN2 (ENSSSAG00000057150) #24	ENSSSAG00000046286 #26	mrps22 (ENSSSAG00000046262) #28	ENSSSAG00000082803	ENSSSAG00000061272 #29	HES6 (ENSSSAG00000061216) #31	ENSSSAG00000088398 #32	ENSSSAG00000061151 #33	ITM2C (ENSSSAG00000061118) #34	gpr55a (ENSSSAG00000120052)	ENSSSAG00000060567	efhd1 (ENSSSAG00000060520)	kcnj13 (ENSSSAG00000060505)
Northern pike	MODERN SPECIES		ENSELUG00000015157	psmd2 (ENSELUG00000015058) #7	prss16 (ENSELUG00000015027) #8	serpine2 (ENSELUG00000015004) #9	wdfy1 (ENSELUG00000014992) #10	dhrs12la (ENSELUG00000014951) #11	ENSELUG00000014895 #12	kcne4 (ENSELUG00000014891) #13	acsl3a (ENSELUG00000014878) #14	farsb (ENSELUG00000014767) #15	SGPP2 (ENSELUG00000014716) #17	ENSELUG00000014710 #18	pax3b (ENSELUG00000014699) #19	EPHA4 (ENSELUG00000014650) #20	pxylp1 (ENSELUG00000000536) #21	SLC25A36 (ENSELUG00000014542) #22	spsb4a (ENSELUG00000014517) #23	ENSELUG00000033315	CLSTN2 (ENSELUG00000000534) #24	rbp2a (ENSELUG00000000526) #26	COPB2 (ENSELUG00000014429) #27	mrps22 (ENSELUG00000014349) #28	PIK3CB (ENSELUG00000014140) #29	PER2 (ENSELUG00000014096) #30	her13 (ENSELUG00000014037) #31	her8.2 (ENSELUG00000014014) #32	ENSELUG00000014008 #33	ITM2C (ENSELUG00000013990) #34	lpar5b (ENSELUG00000013976) #35	gpr55a (ENSELUG00000013972)	NGEF (ENSELUG00000013959)
Otomorpha	ANCESTRAL SPECIES	480										ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.i.a ##20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24
Otophysi	ANCESTRAL SPECIES	351										ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.i.a ##20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.e.a	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24
Characiphysae	ANCESTRAL SPECIES	77	ENSGT00940000164640	ENSGT00390000012596.e	ENSGT00940000157704.a.a	ENSGT00940000175356	ENSGT00940000157718.c	ENSGT00940000156181.B	ENSGT00940000158610.d	ENSGT01050000244924.a.b.h	ENSGT00390000000954	ENSGT00390000004175.b	ENSGT01010000222313.A.b.a.d.g.a	ENSGT00940000154539.a.a.e	ENSGT01100000263547.a.b.b.b.a.a	ENSGT00940000156948.i.a ##20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.e.a	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00530000063252.b	ENSGT00940000155418.a.b.b	ENSGT00940000160603	ENSGT00940000159510	ENSGT00940000180166
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	63	ENSGT00940000164640	ENSGT00390000012596.e	ENSGT00940000157704.a.a	ENSGT00940000175356	ENSGT00940000157718.c	ENSGT00940000156181.B	ENSGT00940000158610.d	ENSGT01050000244924.a.b.h	ENSGT00390000000954	ENSGT00390000004175.b	ENSGT01010000222313.A.b.a.d.g.a	ENSGT00940000154539.a.a.e	ENSGT01100000263547.a.b.b.b.a.a	ENSGT00940000156948.i.a ##20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b.c #22	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183155.a.b.a.a.a	ENSGT00530000063252.b	ENSGT00940000155418.a.b.b	ENSGT00940000160603	ENSGT00940000159510
Characoidei	ANCESTRAL SPECIES	257								ENSGT01050000244924.a.b.h	ENSGT00390000000954	ENSGT00390000004175.b	ENSGT01010000222313.A.b.a.d.g.a	ENSGT00940000154539.a.a.e	ENSGT01100000263547.a.b.b.b.a.a	ENSGT00940000156948.i.a ##20	ENSGT00390000016324 #21	ENSGT00940000154369.g.b.c #22	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT00950000183155.a.b.a.a.a	ENSGT00530000063252.b	ENSGT00940000155418.a.b.b	ENSGT00940000160603	ENSGT00940000159510
Mexicana tetra	MODERN SPECIES		ENSAMXG00000006345	rab3aa (ENSAMXG00000043573)	AGTR1 (ENSAMXG00000025929)	gyg1a (ENSAMXG00000036673)	HLTF (ENSAMXG00000006359)	ENSAMXG00000036626	pccb (ENSAMXG00000006365)	msl2a (ENSAMXG00000032232)	nceh1a (ENSAMXG00000038667)	PPP2R3A (ENSAMXG00000006377)	si:dkey-10f21.4 (ENSAMXG00000033409)	cnn3b (ENSAMXG00000038181)	ENSAMXG00000006396	EPHA4 (ENSAMXG00000006406) ##20	pxylp1 (ENSAMXG00000038336) #21	SLC25A36 (ENSAMXG00000033723) #22	spsb4b (ENSAMXG00000010781) #23	CLSTN2 (ENSAMXG00000010806) #24	ENSAMXG00000039784	fndc3ba (ENSAMXG00000006332)	ENSAMXG00000029621	pld1a (ENSAMXG00000006319)	tnika (ENSAMXG00000006314)	slc2a2 (ENSAMXG00000006312)	eif5a2 (ENSAMXG00000043662)	slc7a14a (ENSAMXG00000006310)	cldn11a (ENSAMXG00000040638)	GRIN3B (ENSAMXG00000006305)	ENSAMXG00000030466	ENSAMXG00000038294	plppr3a (ENSAMXG00000043542)
Red-bellied piranha	MODERN SPECIES	354																SLC25A36 (ENSPNAG00000027426) #22	spsb4b (ENSPNAG00000027380) #23	CLSTN2 (ENSPNAG00000027368) #24	ENSPNAG00000027284	FCGBP (ENSPNAG00000007016)	ENSPNAG00000026893	ENSPNAG00000026851	ENSPNAG00000026842	kirrel3l (ENSPNAG00000005512)
Electric eel	MODERN SPECIES	19	ENSEEEG00000018699	agla (ENSEEEG00000018672)	FRRS1 (ENSEEEG00000018668)	ENSEEEG00000018667	PLPPR4 (ENSEEEG00000018666)	plppr5a (ENSEEEG00000018665)	ptbp2b (ENSEEEG00000017730)	RWDD3 (ENSEEEG00000017675)	hccsa.1 (ENSEEEG00000017674)	ENSEEEG00000017672	si:dkey-10f21.4 (ENSEEEG00000017670)	cnn3b (ENSEEEG00000017666)	ENSEEEG00000017663	EPHA4 (ENSEEEG00000017658) ##20	pxylp1 (ENSEEEG00000017644) #21	SLC25A36 (ENSEEEG00000017640) #22	spsb4b (ENSEEEG00000017639) #23	ENSEEEG00000017625 #24	ENSEEEG00000017623	ENSEEEG00000017622	ENSEEEG00000017620	APLP1 (ENSEEEG00000017609)	ST14 (ENSEEEG00000017594)	kirrel3l (ENSEEEG00000017586)	nphs1 (ENSEEEG00000017583)	ENSEEEG00000017577	ENSEEEG00000017574	ENSEEEG00000017572	ENSEEEG00000017570	ENSEEEG00000017568
Characiphysae_b	ANCESTRAL SPECIES	33	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086	ENSGT00940000166078	ENSGT00940000166763	ENSGT00950000183071.a.a.b.c.c	ENSGT00390000004600.b.a	ENSGT00940000165265.g.a	ENSGT00990000209937	ENSGT00990000208442	ENSGT00940000173713	ENSGT01030000235105	ENSGT00940000156948.i.b ##20	ENSGT00940000154369.g.a ##22	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.b.d #22	ENSGT01030000234629.C.d #23	ENSGT00950000183116.b.a.a.a.b	ENSGT00950000183086.a.a.b.h.b ##24	ENSGT00950000183179.b.b	ENSGT00940000159675.c	ENSGT00940000160165.b ##26	ENSGT00900000141083.c.a ##27	ENSGT01030000234576.D.a.a.a	ENSGT00940000160062.a	ENSGT00940000157990.a.a	ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.e.b	ENSGT00940000163496.a.i.a	ENSGT00940000159567.a.a	ENSGT00940000163520.A.a.a.a.b.a	ENSGT00940000157841
Electric eel	MODERN SPECIES	935																SLC25A36 (ENSEEEG00000005340) #22	spsb4a (ENSEEEG00000005338) #23
Channel catfish	MODERN SPECIES	8	ENSIPUG00000019233	smco4 (ENSIPUG00000019226)	agla (ENSIPUG00000019133)	ENSIPUG00000019125	PALMD (ENSIPUG00000019112)	PLPPR4 (ENSIPUG00000019080)	plppr5a (ENSIPUG00000019064)	ENSIPUG00000019046	ptbp2b (ENSIPUG00000019002)	rwdd3 (ENSIPUG00000018984)	hccsa.1 (ENSIPUG00000018962)	si:dkey-10f21.4 (ENSIPUG00000018940)	cnn3b (ENSIPUG00000018922)	ENSIPUG00000018904	pxylp1 (ENSIPUG00000018814) #21	SLC25A36 (ENSIPUG00000018795) #22	ENSIPUG00000018782	spsb4b (ENSIPUG00000018765) #23	CLSTN2 (ENSIPUG00000018732) #24	aplp1 (ENSIPUG00000018710)	ST14 (ENSIPUG00000018652)	Kirrel (ENSIPUG00000018590)	ENSIPUG00000018575	nphs1 (ENSIPUG00000018528)	ENSIPUG00000018518	zbtb32 (ENSIPUG00000018508)	or71at1 (ENSIPUG00000018502)	or71al2 (ENSIPUG00000018490)	zp2l1 (ENSIPUG00000018481)	ENSIPUG00000018477	ENSIPUG00000018472
Cyprinoidei	ANCESTRAL SPECIES	129	ENSGT00940000156253.a.b	ENSGT00940000159077.j	ENSGT00940000159077.i	ENSGT00940000164824.B.a	ENSGT00940000164824.A	ENSGT00940000156294.c.b	ENSGT00530000063946.a.b	ENSGT00530000063489.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b #18	ENSGT00940000156504.i.a #19	ENSGT00940000156948.i.a ##20	ENSGT01100000263547.a.b.b.b.b.a.b.b.a	ENSGT01100000263547.a.b.b.b.b.a.b.b.b	ENSGT00390000016324 #21	ENSGT00940000154369.g.b #22	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.e.a	ENSGT00940000154308.D.c.b.b.b.a.b.b.b	ENSGT01030000234629.C.c #23	ENSGT00950000183086.a.a.b.h.a #24	ENSGT01100000263547.a.b.b.b.b.a.b.a.a.b.a.a.a.b	ENSGT00940000156013	ENSGT00390000005285	ENSGT00940000169425	ENSGT00940000160117.k.b	ENSGT00940000166267.b.b.a	ENSGT00940000160117.l	ENSGT00940000166267.b.b.b	ENSGT00940000154981.bb.a	ENSGT00950000182923.B.a	ENSGT00990000203615.b.a.b
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	189	ENSGT00940000158344.a.a.b	ENSGT01100000263547.a.b.b.b.b.a.b.a.a.b.a.a.b.b.b.a	ENSGT00940000156253.a.b.c.a	ENSGT00940000159077.j	ENSGT00940000159077.i.a.a	ENSGT00940000164824.B.a.a	ENSGT00940000164824.A	ENSGT00940000156294.c.b.f	ENSGT00530000063946.a.b.b	ENSGT00530000063489.a.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b.b #18	ENSGT00940000156504.i.a.g.b #19	ENSGT00940000156948.i.a.a ##20	ENSGT00390000016324.l #21	ENSGT00940000154369.g.b.e.a #22	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.e.a	ENSGT01030000234629.C.c.b #23	ENSGT00950000183086.a.a.b.h.a.d #24	ENSGT01100000263547.a.b.b.b.b.a.b.a.a.b.a.a.a.a.a.a.b	ENSGT00940000156013.l	ENSGT00390000005285	ENSGT00940000169425.b	ENSGT00940000160117.l	ENSGT00940000166267.b.b.b.b	ENSGT00940000154981.bb.a.q	ENSGT00950000182923.B.a.i	ENSGT00990000203615.b.a.b.g	ENSGT00390000012058.c.a.a
Cyprininae_a	ANCESTRAL SPECIES	38	ENSGT00940000159077.j	ENSGT00940000159077.i.a.a	ENSGT00940000164824.B.a.a	ENSGT00940000156294.c.b.f	ENSGT00530000063946.a.b.b	ENSGT00530000063489.a.b #15	ENSGT00940000166595.b.a #18	ENSGT00940000156504.i.a.h #19	ENSGT00530000063489.a.a #15	ENSGT00940000159500 #17	ENSGT00940000166595.b.b #18	ENSGT00940000156504.i.a.g.b #19	ENSGT01080000257462.a.b.a.b.b.b	ENSGT00940000156948.i.a.a ##20	ENSGT00390000016324.l #21	ENSGT00940000154369.g.b.e.a #22	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.e.a	ENSGT01030000234629.C.c.b #23	ENSGT00950000183086.a.a.b.h.a.d #24	ENSGT01100000263547.a.b.b.b.b.a.b.a.a.b.a.a.a.a.a.a.b	ENSGT00940000156013.l	ENSGT00390000005285	ENSGT00940000169425.a	ENSGT00940000160117.k.b	ENSGT00940000166267.b.b.b.a	ENSGT00940000154981.bb.a.r	ENSGT00950000182923.B.a.j	ENSGT00990000203615.b.a.b.h	ENSGT00390000012058.c.a.b	ENSGT01030000234571.b.b.a.a.a.e	ENSGT01040000240444.A.b.b.h
Common carp reference	MODERN SPECIES	26	GRIK1 (ENSCCRG00000018827)	cldn8.3 (ENSCCRG00000059355)	CLDN8 (ENSCCRG00000025005)	cldn8.2 (ENSCCRG00000076559)	TIAM1 (ENSCCRG00000023012)	scaf4b (ENSCCRG00000032084)	farsb (ENSCCRG00000027027) #15	SGPP2 (ENSCCRG00000077548) #17	ENSCCRG00000056137 #18	pax3b (ENSCCRG00000027071) #19	ENSCCRG00000079537	ENSCCRG00000036826	EPHA4 (ENSCCRG00000026981) ##20	ENSCCRG00000065828	pxylp1 (ENSCCRG00000070709) #21	ENSCCRG00000074832 #22	ENSCCRG00000022567	ENSCCRG00000022580	spsb4b (ENSCCRG00000022582) #23	ENSCCRG00000055486 #24	ENSCCRG00000081656	ENSCCRG00000053636	ENSCCRG00000080057	usp16 (ENSCCRG00000024055)	usp16 (ENSCCRG00000024052)	ENSCCRG00000069762	ENSCCRG00000027122	fat3a (ENSCCRG00000018989)	ENSCCRG00000078408	kcnj13 (ENSCCRG00000063062)	efhd1 (ENSCCRG00000042422)
Goldfish	MODERN SPECIES	6	cldn8.3 (ENSCARG00000007720)	CLDN8 (ENSCARG00000007725)	cldn8.2 (ENSCARG00000007742)	ENSCARG00000007749	TIAM1 (ENSCARG00000007774)	scaf4b (ENSCARG00000007928)	farsb (ENSCARG00000007948) #15	ENSCARG00000008019 #18	pax3b (ENSCARG00000008023) #19	ENSCARG00000008029	ENSCARG00000008035	ENSCARG00000008039	EPHA4 (ENSCARG00000008070) ##20	ENSCARG00000008636	pxylp1 (ENSCARG00000008647) #21	SLC25A36 (ENSCARG00000008668) #22	ENSCARG00000008693	ftr72 (ENSCARG00000008685)	ENSCARG00000008698	ENSCARG00000008700	spsb4b (ENSCARG00000008708) #23	CLSTN2 (ENSCARG00000008713) #24	ENSCARG00000008725	ENSCARG00000008761	efhd1 (ENSCARG00000009024)	kcnj13 (ENSCARG00000009029)	GAL3ST2 (ENSCARG00000009035)	robo2 (ENSCARG00000009107)	ENSCARG00000010820	ROBO1 (ENSCARG00000010981)	ENSCARG00000015097
Cyprininae	ANCESTRAL SPECIES	856										ENSGT00940000156504.i.a.g.a #19	ENSGT01080000257462.a.a.a.b.b	ENSGT00940000156948.i.a.b ##20	ENSGT01100000263547.a.b.b.b.b.a.b.b.a.a.a	ENSGT01100000263547.a.b.b.b.b.a.b.b.b	ENSGT00390000016324.k #21	ENSGT00940000154369.g.b.e.b #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	4	ENSCARG00000017564	TIAM1 (ENSCARG00000017412)	scaf4b (ENSCARG00000017368)	farsb (ENSCARG00000017236) #15	SGPP2 (ENSCARG00000017193) #17	ENSCARG00000017184 #18	pax3b (ENSCARG00000017178) #19	pax3b (ENSCARG00000017170) #19	ENSCARG00000017162	ENSCARG00000017155	EPHA4 (ENSCARG00000016541) ##20	ENSCARG00000016487	ENSCARG00000016463	ENSCARG00000016455	pxylp1 (ENSCARG00000016445) #21	SLC25A36 (ENSCARG00000016421) #22	ENSCARG00000016398	ENSCARG00000016385	spsb4b (ENSCARG00000016379) #23	CLSTN2 (ENSCARG00000016313) #24	ENSCARG00000016306	ENSCARG00000016299	ENSCARG00000016295	ENSCARG00000016289	ENSCARG00000016285	dnaaf9 (ENSCARG00000016094)	cfd (ENSCARG00000016075)	foxi2 (ENSCARG00000016066)	fgfr3 (ENSCARG00000013122)	ENSCARG00000012970	letm1 (ENSCARG00000011981)
Goldfish	MODERN SPECIES	34	GRIK1 (ENSCARG00000035281)	CLDN8 (ENSCARG00000035263)	cldn8.2 (ENSCARG00000035259)	ENSCARG00000035257	TIAM1 (ENSCARG00000035143)	scaf4b (ENSCARG00000035110)	farsb (ENSCARG00000034953) #15	SGPP2 (ENSCARG00000034923) #17	ENSCARG00000034916 #18	pax3b (ENSCARG00000034899) #19	ENSCARG00000034883	EPHA4 (ENSCARG00000034428) ##20	ENSCARG00000034369	ENSCARG00000034324	pxylp1 (ENSCARG00000034293) #21	SLC25A36 (ENSCARG00000034257) #22	ENSCARG00000034212	ENSCARG00000034196	ENSCARG00000034180	ENSCARG00000034169	ENSCARG00000034115	ENSCARG00000034050	wsb1 (ENSCARG00000034018)	ENSCARG00000034003	cuedc1b (ENSCARG00000033982)	vezf1b (ENSCARG00000033960)	ENSCARG00000032192	OMG (ENSCARG00000032138)	ENSCARG00000032129	NF1 (ENSCARG00000031607)	akap1b (ENSCARG00000031328)
Cyprininae_a	ANCESTRAL SPECIES	585										ENSGT00940000156504.i.a.g.a #19	ENSGT01080000257462.a.a.a.b.b	ENSGT00940000156948.i.a.b ##20	ENSGT01100000263547.a.b.b.b.b.a.b.b.a.a.a	ENSGT01100000263547.a.b.b.b.b.a.b.b.b	ENSGT00390000016324.k #21	ENSGT00940000154369.g.b.e.b #22	ENSGT00940000154308.D.c.b.b.b.a.b.b.b	ENSGT01030000234629.C.c.a #23	ENSGT00950000183086.a.a.b.h.a.c #24
Common carp reference	MODERN SPECIES	39	ENSCCRG00000074529	ENSCCRG00000024558	cldn8.2 (ENSCCRG00000063127)	TIAM1 (ENSCCRG00000001831)	scaf4b (ENSCCRG00000027095)	farsb (ENSCCRG00000027083) #15	ENSCCRG00000027080 #18	SGPP2 (ENSCCRG00000054393) #17	pax3b (ENSCCRG00000071060) #19	ENSCCRG00000027000	ENSCCRG00000070321	ENSCCRG00000056242	EPHA4 (ENSCCRG00000019015) ##20	ENSCCRG00000072090	pxylp1 (ENSCCRG00000078562) #21	ENSCCRG00000028342 #22	ENSCCRG00000071838	ENSCCRG00000028351	ENSCCRG00000011030	ENSCCRG00000011026 #23	ENSCCRG00000075956 #24	ENSCCRG00000064253	ENSCCRG00000082540	ENSCCRG00000066272	ENSCCRG00000080261	usp16 (ENSCCRG00000029085)	ENSCCRG00000029090	ENSCCRG00000067250	fat3a (ENSCCRG00000063995)	ENSCCRG00000082279	kcnj13 (ENSCCRG00000076232)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000154369.g.b.f #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000154369.g.b.f #22
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	73	GRIK1 (ENSSGRG00000008992)	cldn8.3 (ENSSGRG00000008987)	cldn8.2 (ENSSGRG00000008985)	TIAM1 (ENSSGRG00000008434)	scaf4b (ENSSGRG00000008411)	farsb (ENSSGRG00000007425) #15	SGPP2 (ENSSGRG00000007349) #17	ENSSGRG00000007347 #18	pax3b (ENSSGRG00000007345) #19	ENSSGRG00000007343 ##19	ENSSGRG00000007340	ENSSGRG00000007336	ENSSGRG00000007334	EPHA4 (ENSSGRG00000006736) ##20	pxylp1 (ENSSGRG00000006720) #21	SLC25A36 (ENSSGRG00000006703) #22	ENSSGRG00000006700	ENSSGRG00000006699	spsb4b (ENSSGRG00000006694) #23	CLSTN2 (ENSSGRG00000006350) #24	usp16 (ENSSGRG00000006314)	ENSSGRG00000006306	ENSSGRG00000006302	ENSSGRG00000006298	fat3a (ENSSGRG00000005012)	ENSSGRG00000004978	ENSSGRG00000004977	GAL3ST2 (ENSSGRG00000004973)	GAL3ST2 (ENSSGRG00000004971)	kcnj13 (ENSSGRG00000004969)	efhd1 (ENSSGRG00000004966)
Golden-line barbel	MODERN SPECIES	659	ENSSGRG00000026318	ENSSGRG00000026316	cldn8.2 (ENSSGRG00000026315)	TIAM1 (ENSSGRG00000026313)	scaf4b (ENSSGRG00000026311)	farsb (ENSSGRG00000026019) #15	SGPP2 (ENSSGRG00000026004) #17	ENSSGRG00000026003 #18	pax3b (ENSSGRG00000026002) #19	ENSSGRG00000026001	ENSSGRG00000025999	ENSSGRG00000025998	ENSSGRG00000025997	EPHA4 (ENSSGRG00000024704) ##20	pxylp1 (ENSSGRG00000024678) #21	SLC25A36 (ENSSGRG00000024676) #22	ENSSGRG00000024674	ENSSGRG00000024673	ENSSGRG00000024671	ENSSGRG00000024670	CLSTN2 (ENSSGRG00000024668) #24
Zebrafish	MODERN SPECIES	6	ENSDARG00000088274	GRIK1 (ENSDARG00000040627)	cldn8.2 (ENSDARG00000040628)	cldn8.3 (ENSDARG00000099950)	TIAM1 (ENSDARG00000025920)	scaf4b (ENSDARG00000018854)	farsb (ENSDARG00000016864) #15	SGPP2 (ENSDARG00000079608) #17	pax3b (ENSDARG00000028348) #19	ENSDARG00000097725	EPHA4 (ENSDARG00000010767) ##20	ENSDARG00000095665	ENSDARG00000077673	ENSDARG00000096545	pxylp1 (ENSDARG00000040644) #21	SLC25A36 (ENSDARG00000015915) #22	ENSDARG00000098004	ftr72 (ENSDARG00000026704)	ENSDARG00000095298	ENSDARG00000097679	ENSDARG00000076093	ENSDARG00000097373	ENSDARG00000040536	ENSDARG00000053800	spsb4b (ENSDARG00000040538) #23	CLSTN2 (ENSDARG00000060638) #24	ENSDARG00000093532	ENSDARG00000094350	ENSDARG00000078101	ENSDARG00000076819	ENSDARG00000095528