Chordata	ANCESTRAL SPECIES																	ENSGT00410000025695 #33
Vertebrata	ANCESTRAL SPECIES																	ENSGT00410000025695 #33
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	1367																ENSGT00410000025695.a #22	ENSGT00390000012913.a #23
Euteleostomi	ANCESTRAL SPECIES	334																ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34
Tetrapoda	ANCESTRAL SPECIES	50	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Amniota	ANCESTRAL SPECIES	23	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Mammalia	ANCESTRAL SPECIES	39	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Theria	ANCESTRAL SPECIES	31									ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Eutheria	ANCESTRAL SPECIES	24					ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Boreoeutheria	ANCESTRAL SPECIES	18				ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Laurasiatheria	ANCESTRAL SPECIES	15				ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	19				ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Artiodactyla	ANCESTRAL SPECIES	22						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Suina	ANCESTRAL SPECIES	39	ENSGT00940000160338 #7	ENSGT00940000162750 #8	ENSGT00530000063632.B #9	ENSGT00960000186612.A.m.b #10	ENSGT00960000186612.A.m.a #11	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Pig	MODERN SPECIES	10	MGAT1 (ENSSSCG00000014538) #9	ENSSSCG00000033438	ENSSSCG00000043984	ENSSSCG00000038707 #10	ENSSSCG00000061333 #11	ATP13A1 (ENSSSCG00000013930) #12	GMIP (ENSSSCG00000013931) #13	LPAR2 (ENSSSCG00000013932) #14	PBX4 (ENSSSCG00000013933) #15	CILP2 (ENSSSCG00000013934) #16	YJEFN3 (ENSSSCG00000013935) #17	NDUFA13 (ENSSSCG00000056961) #18	TSSK6 (ENSSSCG00000013937) #19	GATAD2A (ENSSSCG00000013938) #20	MAU2 (ENSSSCG00000021664) #21	SUGP1 (ENSSSCG00000036970) #22	ENSSSCG00000048260	TM6SF2 (ENSSSCG00000059192) #23	HAPLN4 (ENSSSCG00000034887) #24	NCAN (ENSSSCG00000032131) #25	NR2C2AP (ENSSSCG00000023658) #26	RFXANK (ENSSSCG00000036310) #27	BORCS8 (ENSSSCG00000044084) #28	MEF2B (ENSSSCG00000030351) #29	TMEM161A (ENSSSCG00000033168) #30	SLC25A42 (ENSSSCG00000013927) #31	ENSSSCG00000044637	ARMC6 (ENSSSCG00000049430) #32	SUGP2 (ENSSSCG00000025839) #33	HOMER3 (ENSSSCG00000013919) #34	DDX49 (ENSSSCG00000025329) #35
Chacoan peccary	MODERN SPECIES	769	BTNL9 (ENSCWAG00000009419) #7	ZFP62 (ENSCWAG00000009392) #8	MGAT1 (ENSCWAG00000009379) #9	ENSCWAG00000009337 #10	ENSCWAG00000009299 #11	ATP13A1 (ENSCWAG00000009122) #12	GMIP (ENSCWAG00000009054) #13	LPAR2 (ENSCWAG00000009001) #14	PBX4 (ENSCWAG00000008974) #15	CILP2 (ENSCWAG00000008907) #16	YJEFN3 (ENSCWAG00000008846) #17	NDUFA13 (ENSCWAG00000008819) #18	TSSK6 (ENSCWAG00000008796) #19	GATAD2A (ENSCWAG00000008702) #20	MAU2 (ENSCWAG00000008506) #21	SUGP1 (ENSCWAG00000008452) #22	TM6SF2 (ENSCWAG00000008344) #23	HAPLN4 (ENSCWAG00000008277) #24	NCAN (ENSCWAG00000007920) #25	NR2C2AP (ENSCWAG00000007805) #26	RFXANK (ENSCWAG00000020046) #27	BORCS8 (ENSCWAG00000019997) #28	MEF2B (ENSCWAG00000019951) #29	TMEM161A (ENSCWAG00000019820) #30	SLC25A42 (ENSCWAG00000019779) #31	ARMC6 (ENSCWAG00000019757) #32	SUGP2 (ENSCWAG00000019735) #33	HOMER3 (ENSCWAG00000019671) #34	DDX49 (ENSCWAG00000019644) #35	COPE (ENSCWAG00000019578) #36	CERS1 (ENSCWAG00000019515) #37
Artiodactyla_a	ANCESTRAL SPECIES	23						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Artiodactyla_b	ANCESTRAL SPECIES	23						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000163783	ENSGT00950000183069.b	ENSGT00950000183216.d.a.a.b.a.a.a.b.b	ENSGT00950000183216.d.a.a.b.a.a.b.b.a.a	ENSGT00940000162084	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000154619.g.b.a.a	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000163783	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Sperm whale	MODERN SPECIES	11	ZNF317 (ENSPCTG00005013391)	OR7G3 (ENSPCTG00005013334)	ENSPCTG00005013280	ENSPCTG00005013185	ENSPCTG00005013155	ENSPCTG00005013134	ATP13A1 (ENSPCTG00005013057) #12	GMIP (ENSPCTG00005012997) #13	LPAR2 (ENSPCTG00005012960) #14	ENSPCTG00005012928 #15	ENSPCTG00005012911	CILP2 (ENSPCTG00005012782) #16	YJEFN3 (ENSPCTG00005012712) #17	NDUFA13 (ENSPCTG00005012668) #18	TSSK6 (ENSPCTG00005012651) #19	SUGP1 (ENSPCTG00005012419) #22	TM6SF2 (ENSPCTG00005012374) #23	HAPLN4 (ENSPCTG00005012308) #24	NCAN (ENSPCTG00005012150) #25	NR2C2AP (ENSPCTG00005012090) #26	RFXANK (ENSPCTG00005012057) #27	BORCS8 (ENSPCTG00005011972) #28	CRTC1 (ENSPCTG00005011514)	COMP (ENSPCTG00005011285)	KLHL26 (ENSPCTG00005011236)	ENSPCTG00005011193	PGPEP1 (ENSPCTG00005011099)	MAP1S (ENSPCTG00005011006)	UNC13A (ENSPCTG00005008632)	KCNN1 (ENSPCTG00005008359)	ENSPCTG00005008284
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT00440000039287	ENSGT00940000163783	ENSGT00940000162532	ENSGT00940000162241	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Dolphin	MODERN SPECIES	2460						ATP13A1 (ENSTTRG00000009893) #12	GMIP (ENSTTRG00000009891) #13	LPAR2 (ENSTTRG00000009889) #14	PBX4 (ENSTTRG00000009886) #15	CILP2 (ENSTTRG00000009884) #16	YJEFN3 (ENSTTRG00000009882) #17	NDUFA13 (ENSTTRG00000009880) #18	TSSK6 (ENSTTRG00000009879) #19	GATAD2A (ENSTTRG00000009875) #20	MAU2 (ENSTTRG00000009871) #21	SUGP1 (ENSTTRG00000009868) #22	TM6SF2 (ENSTTRG00000009863) #23	HAPLN4 (ENSTTRG00000009848) #24
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00440000039287	ENSGT00940000163783	ENSGT00940000162532	ENSGT00940000162241	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000018299.eb.a	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00440000039287	ENSGT00940000163783	ENSGT00940000162532	ENSGT00940000162241	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000018299.eb.a	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Narwhal	MODERN SPECIES	298	ZNF317 (ENSMMNG00015005671)	ENSMMNG00015005730	ENSMMNG00015005751	IFT20 (ENSMMNG00015005765)	ATP13A1 (ENSMMNG00015005783) #12	GMIP (ENSMMNG00015005835) #13	LPAR2 (ENSMMNG00015005899) #14	ENSMMNG00015005954 #15	ENSMMNG00015006078	CILP2 (ENSMMNG00015006092) #16	YJEFN3 (ENSMMNG00015006128) #17	ENSMMNG00015006145 #18	TSSK6 (ENSMMNG00015006158) #19	GATAD2A (ENSMMNG00015006177) #20	MAU2 (ENSMMNG00015006228) #21	SUGP1 (ENSMMNG00015006270) #22	TM6SF2 (ENSMMNG00015006300) #23	HAPLN4 (ENSMMNG00015006325) #24	NCAN (ENSMMNG00015006441) #25	ENSMMNG00015006667 #26	RFXANK (ENSMMNG00015006700) #27	BORCS8 (ENSMMNG00015006726) #28	MEF2B (ENSMMNG00015006749) #29	TMEM161A (ENSMMNG00015006783) #30	SLC25A42 (ENSMMNG00015006831) #31	ARMC6 (ENSMMNG00015006856) #32	SUGP2 (ENSMMNG00015006879) #33	HOMER3 (ENSMMNG00015006915) #34	DDX49 (ENSMMNG00015006955) #35	COPE (ENSMMNG00015007007) #36	CERS1 (ENSMMNG00015007051) #37
Beluga whale	MODERN SPECIES	27	ZNF317 (ENSDLEG00000009793)	ENSDLEG00000009767	ENSDLEG00000009743	ENSDLEG00000009736	ATP13A1 (ENSDLEG00000009604) #12	GMIP (ENSDLEG00000009515) #13	LPAR2 (ENSDLEG00000009491) #14	ENSDLEG00000009478 #15	ENSDLEG00000009459	CILP2 (ENSDLEG00000009413) #16	YJEFN3 (ENSDLEG00000009396) #17	ENSDLEG00000009372 #18	TSSK6 (ENSDLEG00000009362) #19	GATAD2A (ENSDLEG00000009307) #20	MAU2 (ENSDLEG00000009190) #21	SUGP1 (ENSDLEG00000009158) #22	TM6SF2 (ENSDLEG00000009148) #23	HAPLN4 (ENSDLEG00000006247) #24	NCAN (ENSDLEG00000006241) #25	ENSDLEG00000006238 #26	RFXANK (ENSDLEG00000006230) #27	ENSDLEG00000006226	MEF2B (ENSDLEG00000006219) #29	TMEM161A (ENSDLEG00000006213) #30	SLC25A42 (ENSDLEG00000006206) #31	ARMC6 (ENSDLEG00000006199) #32	SUGP2 (ENSDLEG00000006190) #33	HOMER3 (ENSDLEG00000006185) #34	DDX49 (ENSDLEG00000006176) #35	COPE (ENSDLEG00000006169) #36	CERS1 (ENSDLEG00000006163) #37
Vaquita	MODERN SPECIES	14	ZNF317 (ENSPSNG00000000646)	ENSPSNG00000000667	ENSPSNG00000000682	ENSPSNG00000000694	ENSPSNG00000000709	ATP13A1 (ENSPSNG00000000739) #12	GMIP (ENSPSNG00000000833) #13	LPAR2 (ENSPSNG00000000922) #14	ENSPSNG00000000937 #15	ENSPSNG00000000965	CILP2 (ENSPSNG00000000993) #16	YJEFN3 (ENSPSNG00000001047) #17	TSSK6 (ENSPSNG00000001081) #19	GATAD2A (ENSPSNG00000001112) #20	MAU2 (ENSPSNG00000001203) #21	SUGP1 (ENSPSNG00000001311) #22	TM6SF2 (ENSPSNG00000001343) #23	HAPLN4 (ENSPSNG00000001367) #24	NCAN (ENSPSNG00000001532) #25	NR2C2AP (ENSPSNG00000001752) #26	RFXANK (ENSPSNG00000001779) #27	MEF2B (ENSPSNG00000001853) #29	TMEM161A (ENSPSNG00000001898) #30	SLC25A42 (ENSPSNG00000001921) #31	ARMC6 (ENSPSNG00000001939) #32	SUGP2 (ENSPSNG00000001966) #33	HOMER3 (ENSPSNG00000002016) #34	DDX49 (ENSPSNG00000002062) #35	COPE (ENSPSNG00000002124) #36	CERS1 (ENSPSNG00000002156) #37	GDF1 (ENSPSNG00000002175)
Blue whale	MODERN SPECIES	14	ENSBMSG00010002262	ENSBMSG00010002274	ENSBMSG00010002290	OR7C1 (ENSBMSG00010002299)	ENSBMSG00010002309	ATP13A1 (ENSBMSG00010002333) #12	GMIP (ENSBMSG00010002416) #13	LPAR2 (ENSBMSG00010002465) #14	ENSBMSG00010002474	ENSBMSG00010002498 #15	CILP2 (ENSBMSG00010002559) #16	YJEFN3 (ENSBMSG00010002588) #17	TSSK6 (ENSBMSG00010002611) #19	GATAD2A (ENSBMSG00010002620) #20	MAU2 (ENSBMSG00010002666) #21	SUGP1 (ENSBMSG00010002719) #22	TM6SF2 (ENSBMSG00010002725) #23	HAPLN4 (ENSBMSG00010002737) #24	NCAN (ENSBMSG00010002745) #25	NR2C2AP (ENSBMSG00010002762) #26	RFXANK (ENSBMSG00010002771) #27	ENSBMSG00010002783	MEF2B (ENSBMSG00010003849) #29	TMEM161A (ENSBMSG00010003877) #30	SLC25A42 (ENSBMSG00010003900) #31	ARMC6 (ENSBMSG00010003914) #32	SUGP2 (ENSBMSG00010003931) #33	HOMER3 (ENSBMSG00010003958) #34	DDX49 (ENSBMSG00010004039) #35	COPE (ENSBMSG00010004064) #36	CERS1 (ENSBMSG00010004105) #37
Pecora	ANCESTRAL SPECIES		ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Yarkand deer	MODERN SPECIES	32	SNAP47 (ENSCHYG00000010619)	JMJD4 (ENSCHYG00000010663)	ENSCHYG00000010707	ZNF354B (ENSCHYG00000010723)	ENSCHYG00000010766	ATP13A1 (ENSCHYG00000010816) #12	GMIP (ENSCHYG00000011272) #13	LPAR2 (ENSCHYG00000011542) #14	PBX4 (ENSCHYG00000011654) #15	CILP2 (ENSCHYG00000012104) #16	YJEFN3 (ENSCHYG00000012151) #17	NDUFA13 (ENSCHYG00000012188) #18	TSSK6 (ENSCHYG00000012255) #19	GATAD2A (ENSCHYG00000012277) #20	MAU2 (ENSCHYG00000012428) #21	SUGP1 (ENSCHYG00000012677) #22	TM6SF2 (ENSCHYG00000012851) #23	HAPLN4 (ENSCHYG00000012901) #24	NCAN (ENSCHYG00000012951) #25	NR2C2AP (ENSCHYG00000013015) #26	RFXANK (ENSCHYG00000013090) #27	BORCS8 (ENSCHYG00000013210) #28	MEF2B (ENSCHYG00000013347) #29	TMEM161A (ENSCHYG00000013806) #30	SLC25A42 (ENSCHYG00000014137) #31	ARMC6 (ENSCHYG00000014214) #32	SUGP2 (ENSCHYG00000014360) #33	ENSCHYG00000014561 #34	DDX49 (ENSCHYG00000015448) #35	CERS1 (ENSCHYG00000015529) #37	GDF1 (ENSCHYG00000015658)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Bovidae	ANCESTRAL SPECIES		ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Bovinae	ANCESTRAL SPECIES	34	ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Bos	ANCESTRAL SPECIES	34	ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Bos_a	ANCESTRAL SPECIES	29	ENSGT00940000160510	ENSGT00940000159618	ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Domestic yak	MODERN SPECIES	27	PRSS38 (ENSBGRG00000002987)	SNAP47 (ENSBGRG00000002943)	JMJD4 (ENSBGRG00000002925)	ZNF354B (ENSBGRG00000002905)	ENSBGRG00000002896	ATP13A1 (ENSBGRG00000002465) #12	GMIP (ENSBGRG00000002278) #13	LPAR2 (ENSBGRG00000002227) #14	PBX4 (ENSBGRG00000002159) #15	CILP2 (ENSBGRG00000002130) #16	YJEFN3 (ENSBGRG00000002015) #17	TSSK6 (ENSBGRG00000001976) #19	GATAD2A (ENSBGRG00000001936) #20	ENSBGRG00000001911	MAU2 (ENSBGRG00000001879) #21	SUGP1 (ENSBGRG00000001817) #22	TM6SF2 (ENSBGRG00000001786) #23	HAPLN4 (ENSBGRG00000001768) #24	NCAN (ENSBGRG00000001688) #25	NR2C2AP (ENSBGRG00000001646) #26	RFXANK (ENSBGRG00000001549) #27	ENSBGRG00000001503 #28	MEF2B (ENSBGRG00000001435) #29	TMEM161A (ENSBGRG00000001322) #30	SLC25A42 (ENSBGRG00000001293) #31	ARMC6 (ENSBGRG00000001271) #32	SUGP2 (ENSBGRG00000001227) #33	ENSBGRG00000001213 #34	HOMER3 (ENSBGRG00000001163) #34	DDX49 (ENSBGRG00000001122) #35	COPE (ENSBGRG00000001045) #36
Wild yak	MODERN SPECIES	984																SUGP1 (ENSBMUG00000014735) #22	TM6SF2 (ENSBMUG00000014742) #23	ENSBMUG00000014766 #24	NCAN (ENSBMUG00000014781) #25	NR2C2AP (ENSBMUG00000014819) #26	RFXANK (ENSBMUG00000014864) #27	BORCS8 (ENSBMUG00000014902) #28	MEF2B (ENSBMUG00000014926) #29	TMEM161A (ENSBMUG00000014965) #30	SLC25A42 (ENSBMUG00000014988) #31	ARMC6 (ENSBMUG00000015012) #32	SUGP2 (ENSBMUG00000015048) #33	HOMER3 (ENSBMUG00000015101) #34	DDX49 (ENSBMUG00000015132) #35	COPE (ENSBMUG00000015145) #36	CERS1 (ENSBMUG00000015159) #37
Bos_b	ANCESTRAL SPECIES	36	ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005011249	ENSBIXG00005001061	ENSBIXG00005011259	SNAP47 (ENSBIXG00005011285)	JMJD4 (ENSBIXG00005005916)	ENSBIXG00005000504	ZNF354B (ENSBIXG00005011307)	ENSBIXG00005011324	ATP13A1 (ENSBIXG00005011383) #12	GMIP (ENSBIXG00005011455) #13	LPAR2 (ENSBIXG00005011498) #14	PBX4 (ENSBIXG00005011533) #15	CILP2 (ENSBIXG00005011569) #16	GATAD2A (ENSBIXG00005011721) #20	MAU2 (ENSBIXG00005011825) #21	SUGP1 (ENSBIXG00005011882) #22	TM6SF2 (ENSBIXG00005011902) #23	HAPLN4 (ENSBIXG00005006424) #24	NCAN (ENSBIXG00005011939) #25	NR2C2AP (ENSBIXG00005011976) #26	RFXANK (ENSBIXG00005012032) #27	BORCS8 (ENSBIXG00005012065) #28	MEF2B (ENSBIXG00005012139) #29	TMEM161A (ENSBIXG00005007436) #30	SLC25A42 (ENSBIXG00005012191) #31	ARMC6 (ENSBIXG00005012220) #32	SUGP2 (ENSBIXG00005001278) #33	HOMER3 (ENSBIXG00005000373) #34	DDX49 (ENSBIXG00005012358) #35	COPE (ENSBIXG00005012672) #36	UPF1 (ENSBIXG00005012808)
Cow	MODERN SPECIES	26	PRSS38 (ENSBTAG00000013977)	SNAP47 (ENSBTAG00000004188)	JMJD4 (ENSBTAG00000004191)	ZNF354B (ENSBTAG00000017123)	ENSBTAG00000052161	ATP13A1 (ENSBTAG00000007128) #12	GMIP (ENSBTAG00000015144) #13	LPAR2 (ENSBTAG00000004652) #14	PBX4 (ENSBTAG00000009975) #15	CILP2 (ENSBTAG00000014969) #16	YJEFN3 (ENSBTAG00000014968) #17	NDUFA13 (ENSBTAG00000007812) #18	TSSK6 (ENSBTAG00000006649) #19	GATAD2A (ENSBTAG00000003034) #20	MAU2 (ENSBTAG00000006124) #21	SUGP1 (ENSBTAG00000006116) #22	TM6SF2 (ENSBTAG00000016042) #23	HAPLN4 (ENSBTAG00000001765) #24	NCAN (ENSBTAG00000001764) #25	NR2C2AP (ENSBTAG00000001763) #26	RFXANK (ENSBTAG00000001762) #27	BORCS8 (ENSBTAG00000025817) #28	MEF2B (ENSBTAG00000001818) #29	TMEM161A (ENSBTAG00000001817) #30	SLC25A42 (ENSBTAG00000001816) #31	ARMC6 (ENSBTAG00000013291) #32	SUGP2 (ENSBTAG00000013288) #33	HOMER3 (ENSBTAG00000000813) #34	DDX49 (ENSBTAG00000000811) #35	COPE (ENSBTAG00000000810) #36	CERS1 (ENSBTAG00000037729) #37
American bison	MODERN SPECIES	3165	PRSS38 (ENSBBBG00000016108)	SNAP47 (ENSBBBG00000007139)	JMJD4 (ENSBBBG00000016083)	ZNF354B (ENSBBBG00000016063)	ENSBBBG00000016056	ATP13A1 (ENSBBBG00000003990) #12	GMIP (ENSBBBG00000016022) #13	LPAR2 (ENSBBBG00000015996) #14	PBX4 (ENSBBBG00000015984) #15	CILP2 (ENSBBBG00000015975) #16	YJEFN3 (ENSBBBG00000015957) #17	NDUFA13 (ENSBBBG00000015950) #18	TSSK6 (ENSBBBG00000015942) #19	GATAD2A (ENSBBBG00000015939) #20	MAU2 (ENSBBBG00000003961) #21	SUGP1 (ENSBBBG00000015892) #22	TM6SF2 (ENSBBBG00000015869) #23	HAPLN4 (ENSBBBG00000015855) #24	NCAN (ENSBBBG00000003940) #25	NR2C2AP (ENSBBBG00000003931) #26	RFXANK (ENSBBBG00000015745) #27	ENSBBBG00000015701 #28	MEF2B (ENSBBBG00000007138) #29	TMEM161A (ENSBBBG00000007455) #30	ARMC6 (ENSBBBG00000015629) #32	SUGP2 (ENSBBBG00000003426) #33	ENSBBBG00000003456 #34	ENSBBBG00000003467 #34	DDX49 (ENSBBBG00000015616) #35	COPE (ENSBBBG00000015595) #36	CERS1 (ENSBBBG00000015545) #37
Caprinae	ANCESTRAL SPECIES	32	ENSGT00940000154494.a.b	ENSGT00950000182843.b	ENSGT00940000159380	ENSGT00940000162570	ENSGT00730000111029.e.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020018666	WNT9A (ENSOARG00020018708)	PRSS38 (ENSOARG00020018766)	SNAP47 (ENSOARG00020018819)	ZNF354B (ENSOARG00020018905)	ENSOARG00020018960	ATP13A1 (ENSOARG00020019002) #12	GMIP (ENSOARG00020019185) #13	LPAR2 (ENSOARG00020019376) #14	CILP2 (ENSOARG00020019527) #16	YJEFN3 (ENSOARG00020019633) #17	NDUFA13 (ENSOARG00020019709) #18	TSSK6 (ENSOARG00020019749) #19	GATAD2A (ENSOARG00020019767) #20	MAU2 (ENSOARG00020019838) #21	SUGP1 (ENSOARG00020019993) #22	TM6SF2 (ENSOARG00020020089) #23	HAPLN4 (ENSOARG00020020166) #24	NR2C2AP (ENSOARG00020020240) #26	RFXANK (ENSOARG00020020308) #27	BORCS8 (ENSOARG00020020354) #28	MEF2B (ENSOARG00020020398) #29	TMEM161A (ENSOARG00020020857) #30	SLC25A42 (ENSOARG00020020909) #31	ARMC6 (ENSOARG00020020947) #32	SUGP2 (ENSOARG00020021040) #33	ENSOARG00020021129 #34	DDX49 (ENSOARG00020021548) #35	CERS1 (ENSOARG00020021615) #37	UPF1 (ENSOARG00020003352)	COMP (ENSOARG00020003569)
Goat	MODERN SPECIES	26	ENSCHIG00000004906	SNAP47 (ENSCHIG00000025042)	JMJD4 (ENSCHIG00000001908)	ZNF354B (ENSCHIG00000024384)	ENSCHIG00000027175	ATP13A1 (ENSCHIG00000027146) #12	GMIP (ENSCHIG00000006935) #13	LPAR2 (ENSCHIG00000026267) #14	PBX4 (ENSCHIG00000020490) #15	CILP2 (ENSCHIG00000016599) #16	YJEFN3 (ENSCHIG00000022695) #17	NDUFA13 (ENSCHIG00000005106) #18	TSSK6 (ENSCHIG00000012857) #19	GATAD2A (ENSCHIG00000022449) #20	MAU2 (ENSCHIG00000018574) #21	SUGP1 (ENSCHIG00000024169) #22	TM6SF2 (ENSCHIG00000009497) #23	HAPLN4 (ENSCHIG00000017398) #24	NCAN (ENSCHIG00000023523) #25	NR2C2AP (ENSCHIG00000026754) #26	RFXANK (ENSCHIG00000009697) #27	BORCS8 (ENSCHIG00000023514) #28	MEF2B (ENSCHIG00000009022) #29	TMEM161A (ENSCHIG00000015703) #30	SLC25A42 (ENSCHIG00000017224) #31	ARMC6 (ENSCHIG00000022745) #32	SUGP2 (ENSCHIG00000000571) #33	HOMER3 (ENSCHIG00000013425) #34	DDX49 (ENSCHIG00000019910) #35	COPE (ENSCHIG00000019197) #36	CERS1 (ENSCHIG00000021209) #37
Siberian musk deer	MODERN SPECIES	1231					ATP13A1 (ENSMMSG00000018140) #12	GMIP (ENSMMSG00000018067) #13	LPAR2 (ENSMMSG00000018021) #14	PBX4 (ENSMMSG00000017955) #15	CILP2 (ENSMMSG00000017925) #16	YJEFN3 (ENSMMSG00000017864) #17	ENSMMSG00000017802 #18	TSSK6 (ENSMMSG00000017779) #19	ENSMMSG00000017748	GATAD2A (ENSMMSG00000017683) #20	MAU2 (ENSMMSG00000017598) #21	SUGP1 (ENSMMSG00000017541) #22	TM6SF2 (ENSMMSG00000017487) #23	HAPLN4 (ENSMMSG00000017463) #24	NCAN (ENSMMSG00000017015) #25	NR2C2AP (ENSMMSG00000016963) #26	RFXANK (ENSMMSG00000016859) #27	BORCS8 (ENSMMSG00000016823) #28	MEF2B (ENSMMSG00000016211) #29	TMEM161A (ENSMMSG00000016113) #30	SLC25A42 (ENSMMSG00000022673) #31	ARMC6 (ENSMMSG00000022659) #32	SUGP2 (ENSMMSG00000022643) #33	HOMER3 (ENSMMSG00000022598) #34	DDX49 (ENSMMSG00000022565) #35	COPE (ENSMMSG00000022538) #36	CERS1 (ENSMMSG00000022516) #37
Camelidae	ANCESTRAL SPECIES	64							ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643.a #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Arabian camel	MODERN SPECIES	14	GABRG2 (ENSCDRG00005009620)	GABRA1 (ENSCDRG00005010066)	GABRA6 (ENSCDRG00005010202)	GABRB2 (ENSCDRG00005010424)	ENSCDRG00005010558	ATP10B (ENSCDRG00005010580)	ATP13A1 (ENSCDRG00005011036) #12	GMIP (ENSCDRG00005011233) #13	LPAR2 (ENSCDRG00005011318) #14	PBX4 (ENSCDRG00005011358) #15	CILP2 (ENSCDRG00005011464) #16	YJEFN3 (ENSCDRG00005011508) #17	TSSK6 (ENSCDRG00005011623) #19	GATAD2A (ENSCDRG00005011647) #20	MAU2 (ENSCDRG00005011821) #21	SUGP1 (ENSCDRG00005011946) #22	TM6SF2 (ENSCDRG00005012037) #23	HAPLN4 (ENSCDRG00005012163) #24	NCAN (ENSCDRG00005012212) #25	NR2C2AP (ENSCDRG00005012299) #26	RFXANK (ENSCDRG00005012616) #27	ENSCDRG00005012691 #28	MEF2B (ENSCDRG00005012755) #29	TMEM161A (ENSCDRG00005012779) #30	SLC25A42 (ENSCDRG00005012927) #31	ARMC6 (ENSCDRG00005012979) #32	SUGP2 (ENSCDRG00005013031) #33	HOMER3 (ENSCDRG00005013258) #34	DDX49 (ENSCDRG00005013373) #35	COPE (ENSCDRG00005013441) #36	CERS1 (ENSCDRG00005013600) #37
Alpaca	MODERN SPECIES	2871																SUGP1 (ENSVPAG00000002122) #22	ENSVPAG00000002121 #23	NCAN (ENSVPAG00000002120) #25
Laurasiatheria_b	ANCESTRAL SPECIES	18				ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000012690	ENSGT00940000156463	ENSGT00390000001296	ENSGT00950000182890.D.d.c	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000012690	ENSGT00940000156463.e	ENSGT00390000001296	ENSGT00950000182890.D.d.c	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000012690	ENSGT00940000156463.e	ENSGT00390000001296	ENSGT00950000182890.D.d.c	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
lion	MODERN SPECIES	2	TMEM42 (ENSPLOG00000001938)	KIF15 (ENSPLOG00000001861)	KIAA1143 (ENSPLOG00000001819)	ENSPLOG00000001812	ZNF502 (ENSPLOG00000001805)	ATP13A1 (ENSPLOG00000001767) #12	GMIP (ENSPLOG00000001614) #13	LPAR2 (ENSPLOG00000001569) #14	PBX4 (ENSPLOG00000001560) #15	CILP2 (ENSPLOG00000001532) #16	YJEFN3 (ENSPLOG00000001517) #17	NDUFA13 (ENSPLOG00000001502) #18	TSSK6 (ENSPLOG00000001493) #19	GATAD2A (ENSPLOG00000001463) #20	MAU2 (ENSPLOG00000001424) #21	SUGP1 (ENSPLOG00000001334) #22	TM6SF2 (ENSPLOG00000001308) #23	HAPLN4 (ENSPLOG00000001286) #24	NCAN (ENSPLOG00000001120) #25	ENSPLOG00000000980 #26	RFXANK (ENSPLOG00000000919) #27	BORCS8 (ENSPLOG00000000887) #28	MEF2B (ENSPLOG00000000863) #29	TMEM161A (ENSPLOG00000000833) #30	SLC25A42 (ENSPLOG00000000808) #31	ARMC6 (ENSPLOG00000000792) #32	SUGP2 (ENSPLOG00000000772) #33	HOMER3 (ENSPLOG00000000722) #34	DDX49 (ENSPLOG00000000667) #35	COPE (ENSPLOG00000000628) #36	CERS1 (ENSPLOG00000000599) #37
leopard	MODERN SPECIES	68	KIF15 (ENSPPRG00000010780)	KIAA1143 (ENSPPRG00000011059)	ENSPPRG00000015943	ZNF502 (ENSPPRG00000011352)	ENSPPRG00000011672	ATP13A1 (ENSPPRG00000014180) #12	GMIP (ENSPPRG00000016893) #13	LPAR2 (ENSPPRG00000018123) #14	PBX4 (ENSPPRG00000020424) #15	CILP2 (ENSPPRG00000023737) #16	YJEFN3 (ENSPPRG00000023619) #17	NDUFA13 (ENSPPRG00000022807) #18	TSSK6 (ENSPPRG00000016235) #19	GATAD2A (ENSPPRG00000000270) #20	MAU2 (ENSPPRG00000000643) #21	SUGP1 (ENSPPRG00000000880) #22	TM6SF2 (ENSPPRG00000001208) #23	HAPLN4 (ENSPPRG00000001581) #24	NR2C2AP (ENSPPRG00000003111) #26	RFXANK (ENSPPRG00000004266) #27	BORCS8 (ENSPPRG00000004580) #28	MEF2B (ENSPPRG00000006317) #29	TMEM161A (ENSPPRG00000008638) #30	SLC25A42 (ENSPPRG00000008936) #31	ARMC6 (ENSPPRG00000009582) #32	SUGP2 (ENSPPRG00000010924) #33	HOMER3 (ENSPPRG00000013004) #34	DDX49 (ENSPPRG00000013274) #35	COPE (ENSPPRG00000019668) #36	CERS1 (ENSPPRG00000021419) #37	GDF1 (ENSPPRG00000024438)
Tiger	MODERN SPECIES	281	TMEM42 (ENSPTIG00000013807)	ENSPTIG00000013744	ENSPTIG00000013732	KIAA1143 (ENSPTIG00000013723)	ENSPTIG00000006544	ZNF502 (ENSPTIG00000013634)	GMIP (ENSPTIG00000013444) #13	LPAR2 (ENSPTIG00000013412) #14	PBX4 (ENSPTIG00000013405) #15	CILP2 (ENSPTIG00000013349) #16	YJEFN3 (ENSPTIG00000013321) #17	NDUFA13 (ENSPTIG00000013303) #18	TSSK6 (ENSPTIG00000006514) #19	GATAD2A (ENSPTIG00000013272) #20	MAU2 (ENSPTIG00000013179) #21	SUGP1 (ENSPTIG00000013061) #22	TM6SF2 (ENSPTIG00000013026) #23	HAPLN4 (ENSPTIG00000013017) #24	NR2C2AP (ENSPTIG00000012962) #26	RFXANK (ENSPTIG00000012655) #27	BORCS8 (ENSPTIG00000012610) #28	MEF2B (ENSPTIG00000012475) #29	TMEM161A (ENSPTIG00000012395) #30	SLC25A42 (ENSPTIG00000012354) #31	ARMC6 (ENSPTIG00000012073) #32	SUGP2 (ENSPTIG00000012003) #33	HOMER3 (ENSPTIG00000011533) #34	DDX49 (ENSPTIG00000011259) #35	COPE (ENSPTIG00000010957) #36	CERS1 (ENSPTIG00000010849) #37	GDF1 (ENSPTIG00000010670)
Cat	MODERN SPECIES	1	TMEM42 (ENSFCAG00000007645)	KIF15 (ENSFCAG00000007640)	KIAA1143 (ENSFCAG00000007638)	ENSFCAG00000042601	ZNF502 (ENSFCAG00000024223)	ATP13A1 (ENSFCAG00000014541) #12	GMIP (ENSFCAG00000014540) #13	LPAR2 (ENSFCAG00000014538) #14	PBX4 (ENSFCAG00000014536) #15	CILP2 (ENSFCAG00000014331) #16	YJEFN3 (ENSFCAG00000014330) #17	NDUFA13 (ENSFCAG00000014329) #18	TSSK6 (ENSFCAG00000014328) #19	GATAD2A (ENSFCAG00000014327) #20	MAU2 (ENSFCAG00000009780) #21	SUGP1 (ENSFCAG00000009779) #22	HAPLN4 (ENSFCAG00000022898) #24	NCAN (ENSFCAG00000008376) #25	NR2C2AP (ENSFCAG00000009777) #26	RFXANK (ENSFCAG00000009775) #27	BORCS8 (ENSFCAG00000047348) #28	MEF2B (ENSFCAG00000009774) #29	TMEM161A (ENSFCAG00000009771) #30	SLC25A42 (ENSFCAG00000009770) #31	ARMC6 (ENSFCAG00000009767) #32	SUGP2 (ENSFCAG00000009765) #33	HOMER3 (ENSFCAG00000009762) #34	DDX49 (ENSFCAG00000009760) #35	CERS1 (ENSFCAG00000023920) #36	UPF1 (ENSFCAG00000009757)	COMP (ENSFCAG00000009754)
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Canidae	ANCESTRAL SPECIES		ENSGT00940000156463	ENSGT00390000001296	ENSGT00950000182890.D.d.c.d	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478.b #36	ENSGT01030000234515.b #37
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000156463	ENSGT00390000001296	ENSGT00950000182890.D.d.c.d	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478.b #36	ENSGT01030000234515.b #37
Dingo	MODERN SPECIES	112	TMEM42 (ENSCAFG00020013305)	KIF15 (ENSCAFG00020013252)	KIAA1143 (ENSCAFG00020013246)	ZNF502 (ENSCAFG00020013240)	ATP13A1 (ENSCAFG00020012802) #12	GMIP (ENSCAFG00020012761) #13	LPAR2 (ENSCAFG00020012758) #14	PBX4 (ENSCAFG00020012739) #15	CILP2 (ENSCAFG00020012728) #16	YJEFN3 (ENSCAFG00020012724) #17	ENSCAFG00020012723	NDUFA13 (ENSCAFG00020012721) #18	TSSK6 (ENSCAFG00020012717) #19	GATAD2A (ENSCAFG00020012715) #20	MAU2 (ENSCAFG00020012543) #21	SUGP1 (ENSCAFG00020012508) #22	TM6SF2 (ENSCAFG00020012504) #23	HAPLN4 (ENSCAFG00020012500) #24	NCAN (ENSCAFG00020012454) #25	NR2C2AP (ENSCAFG00020012443) #26	RFXANK (ENSCAFG00020012437) #27	BORCS8 (ENSCAFG00020012435) #28	MEF2B (ENSCAFG00020012425) #29	TMEM161A (ENSCAFG00020012412) #30	SLC25A42 (ENSCAFG00020012408) #31	ARMC6 (ENSCAFG00020012404) #32	SUGP2 (ENSCAFG00020012392) #33	HOMER3 (ENSCAFG00020012389) #34	DDX49 (ENSCAFG00020012375) #35	COPE (ENSCAFG00020012363) #36	CERS1 (ENSCAFG00020012351) #37
Dog	MODERN SPECIES	12	ENSCAFG00845013403	KIF15 (ENSCAFG00845013570)	KIAA1143 (ENSCAFG00845013959)	ENSCAFG00845013976	ENSCAFG00845014000	ATP13A1 (ENSCAFG00845014060) #12	GMIP (ENSCAFG00845014134) #13	LPAR2 (ENSCAFG00845014191) #14	PBX4 (ENSCAFG00845014230) #15	CILP2 (ENSCAFG00845014273) #16	YJEFN3 (ENSCAFG00845014306) #17	NDUFA13 (ENSCAFG00845014336) #18	TSSK6 (ENSCAFG00845014349) #19	GATAD2A (ENSCAFG00845014383) #20	MAU2 (ENSCAFG00845014470) #21	SUGP1 (ENSCAFG00845014514) #22	TM6SF2 (ENSCAFG00845014561) #23	HAPLN4 (ENSCAFG00845014588) #24	NCAN (ENSCAFG00845014625) #25	RFXANK (ENSCAFG00845014775) #27	NR2C2AP (ENSCAFG00845018085) #26	BORCS8 (ENSCAFG00845018185) #28	MEF2B (ENSCAFG00845018253) #29	TMEM161A (ENSCAFG00845018423) #30	SLC25A42 (ENSCAFG00845018653) #31	ARMC6 (ENSCAFG00845018765) #32	SUGP2 (ENSCAFG00845018888) #33	HOMER3 (ENSCAFG00845019115) #34	DDX49 (ENSCAFG00845019266) #35	COPE (ENSCAFG00845019400) #36	CERS1 (ENSCAFG00845019662) #37
Red fox	MODERN SPECIES	5	TMEM42 (ENSVVUG00000007057)	KIF15 (ENSVVUG00000007077)	KIAA1143 (ENSVVUG00000007169)	ENSVVUG00000007176	ZNF502 (ENSVVUG00000007182)	ATP13A1 (ENSVVUG00000007184) #12	GMIP (ENSVVUG00000007227) #13	LPAR2 (ENSVVUG00000007473) #14	PBX4 (ENSVVUG00000007478) #15	CILP2 (ENSVVUG00000007489) #16	YJEFN3 (ENSVVUG00000007502) #17	NDUFA13 (ENSVVUG00000007513) #18	TSSK6 (ENSVVUG00000007516) #19	GATAD2A (ENSVVUG00000007522) #20	MAU2 (ENSVVUG00000007527) #21	SUGP1 (ENSVVUG00000007569) #22	TM6SF2 (ENSVVUG00000007584) #23	HAPLN4 (ENSVVUG00000007594) #24	NCAN (ENSVVUG00000007597) #25	NR2C2AP (ENSVVUG00000007609) #26	RFXANK (ENSVVUG00000007633) #27	BORCS8 (ENSVVUG00000007667) #28	MEF2B (ENSVVUG00000007672) #29	TMEM161A (ENSVVUG00000007683) #30	SLC25A42 (ENSVVUG00000007728) #31	ARMC6 (ENSVVUG00000007731) #32	SUGP2 (ENSVVUG00000007744) #33	HOMER3 (ENSVVUG00000007758) #34	DDX49 (ENSVVUG00000007767) #35	ENSVVUG00000007777 #36	CERS1 (ENSVVUG00000007783) #37
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000012690	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Mustelinae	ANCESTRAL SPECIES	10	ENSGT00390000012690	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
American mink	MODERN SPECIES	58	ENSNVIG00000021055	KIF15 (ENSNVIG00000021010)	K1143 (ENSNVIG00000020998)	ZNF501 (ENSNVIG00000020994)	ZNF502 (ENSNVIG00000020983)	ATP13A1 (ENSNVIG00000020944) #12	GMIP (ENSNVIG00000020899) #13	LPAR2 (ENSNVIG00000020878) #14	PBX4 (ENSNVIG00000020863) #15	CILP2 (ENSNVIG00000020847) #16	YJEFN3 (ENSNVIG00000020838) #17	NDUFA13 (ENSNVIG00000020832) #18	TSSK6 (ENSNVIG00000020829) #19	GATAD2A (ENSNVIG00000020782) #20	MAU2 (ENSNVIG00000020762) #21	SUGP1 (ENSNVIG00000020747) #22	TM6SF2 (ENSNVIG00000020733) #23	HAPLN4 (ENSNVIG00000020713) #24	NCAN (ENSNVIG00000020377) #25	NR2CA (ENSNVIG00000020303) #26	RFXANK (ENSNVIG00000020264) #27	BORCS8 (ENSNVIG00000020221) #28	MEF2B (ENSNVIG00000020206) #29	TMEM161A (ENSNVIG00000020180) #30	S2542 (ENSNVIG00000020166) #31	ARMC6 (ENSNVIG00000020143) #32	SUGP2 (ENSNVIG00000020116) #33	HOMER3 (ENSNVIG00000020032) #34	DDX49 (ENSNVIG00000020003) #35	COPE (ENSNVIG00000019958) #36	CERS1 (ENSNVIG00000019939) #37
Ferret	MODERN SPECIES	238	EXOSC7 (ENSMPUG00000015336)	ZDHHC3 (ENSMPUG00000015337)	TMEM42 (ENSMPUG00000015339)	KIF15 (ENSMPUG00000015344)	KIAA1143 (ENSMPUG00000015348)	ZNF502 (ENSMPUG00000015349)	ATP13A1 (ENSMPUG00000015350) #12	GMIP (ENSMPUG00000015351) #13	LPAR2 (ENSMPUG00000015364) #14	PBX4 (ENSMPUG00000015365) #15	CILP2 (ENSMPUG00000015383) #16	YJEFN3 (ENSMPUG00000015390) #17	TSSK6 (ENSMPUG00000019662) #19	GATAD2A (ENSMPUG00000015399) #20	MAU2 (ENSMPUG00000015402) #21	SUGP1 (ENSMPUG00000015404) #22	TM6SF2 (ENSMPUG00000015407) #23	HAPLN4 (ENSMPUG00000015424) #24	NCAN (ENSMPUG00000015433) #25	NR2C2AP (ENSMPUG00000015462) #26	RFXANK (ENSMPUG00000015469) #27	BORCS8 (ENSMPUG00000015471) #28	MEF2B (ENSMPUG00000015473) #29	TMEM161A (ENSMPUG00000015475) #30	SLC25A42 (ENSMPUG00000015477) #31	SUGP2 (ENSMPUG00000015478) #33	HOMER3 (ENSMPUG00000015484) #34	DDX49 (ENSMPUG00000015485) #35	COPE (ENSMPUG00000015486) #36	CERS1 (ENSMPUG00000015497) #37	GDF1 (ENSMPUG00000015514)
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000012690	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Giant Panda	MODERN SPECIES	14	TMEM42 (ENSAMEG00000012098)	KIF15 (ENSAMEG00000012038)	KIAA1143 (ENSAMEG00000012027)	ENSAMEG00000019371	ENSAMEG00000012026	ENSAMEG00000011962 #12	GMIP (ENSAMEG00000011931) #13	LPAR2 (ENSAMEG00000024299) #14	PBX4 (ENSAMEG00000011909) #15	CILP2 (ENSAMEG00000011906) #16	YJEFN3 (ENSAMEG00000030667) #17	NDUFA13 (ENSAMEG00000011893) #18	TSSK6 (ENSAMEG00000019351) #19	GATAD2A (ENSAMEG00000011882) #20	MAU2 (ENSAMEG00000011868) #21	SUGP1 (ENSAMEG00000011838) #22	TM6SF2 (ENSAMEG00000011811) #23	HAPLN4 (ENSAMEG00000027731) #24	NCAN (ENSAMEG00000011734) #25	NR2C2AP (ENSAMEG00000011727) #26	RFXANK (ENSAMEG00000011703) #27	BORCS8 (ENSAMEG00000011698) #28	MEF2B (ENSAMEG00000011682) #29	TMEM161A (ENSAMEG00000011655) #30	SLC25A42 (ENSAMEG00000027218) #31	ARMC6 (ENSAMEG00000011621) #32	SUGP2 (ENSAMEG00000011613) #33	HOMER3 (ENSAMEG00000011595) #34	DDX49 (ENSAMEG00000011566) #35	COPE (ENSAMEG00000011524) #36	CERS1 (ENSAMEG00000011517) #37
Ursus	ANCESTRAL SPECIES	5	ENSGT00390000012690	ENSGT00940000156463	ENSGT00390000001296	ENSGT00940000153104.e.a.a.b	ENSGT00940000163095.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Polar bear	MODERN SPECIES	255	ENSUMAG00000005734	TMEM42 (ENSUMAG00000005738)	KIF15 (ENSUMAG00000005764)	KIAA1143 (ENSUMAG00000005959)	ZNF501 (ENSUMAG00000005963)	ZNF502 (ENSUMAG00000005965)	ATP13A1 (ENSUMAG00000005989) #12	GMIP (ENSUMAG00000006087) #13	LPAR2 (ENSUMAG00000006117) #14	PBX4 (ENSUMAG00000006125) #15	ENSUMAG00000006179 #17	NDUFA13 (ENSUMAG00000006183) #18	TSSK6 (ENSUMAG00000006185) #19	GATAD2A (ENSUMAG00000006192) #20	MAU2 (ENSUMAG00000006229) #21	SUGP1 (ENSUMAG00000006358) #22	TM6SF2 (ENSUMAG00000006368) #23	NCAN (ENSUMAG00000006378) #25	NR2C2AP (ENSUMAG00000006411) #26	RFXANK (ENSUMAG00000006419) #27	BORCS8 (ENSUMAG00000006425) #28	MEF2B (ENSUMAG00000006437) #29	TMEM161A (ENSUMAG00000006455) #30	SLC25A42 (ENSUMAG00000006458) #31	ARMC6 (ENSUMAG00000006462) #32	SUGP2 (ENSUMAG00000006467) #33	HOMER3 (ENSUMAG00000006477) #34	DDX49 (ENSUMAG00000006489) #35	COPE (ENSUMAG00000006505) #36	UPF1 (ENSUMAG00000006652)	COMP (ENSUMAG00000007436)
American black bear	DUPLICATION
American black bear	MODERN SPECIES		ENSUAMG00000001974	ENSUAMG00000001965	TMEM42 (ENSUAMG00000001960)	KIF15 (ENSUAMG00000001916)	KIAA1143 (ENSUAMG00000001910)	ZNF501 (ENSUAMG00000001908)	ZNF502 (ENSUAMG00000001904)	ATP13A1 (ENSUAMG00000001148) #12	LPAR2 (ENSUAMG00000001027) #14	PBX4 (ENSUAMG00000000763) #15	CILP2 (ENSUAMG00000000697) #16	YJEFN3 (ENSUAMG00000000690) #17	NDUFA13 (ENSUAMG00000000686) #18	TSSK6 (ENSUAMG00000000680) #19	GATAD2A (ENSUAMG00000000666) #20	ENSUAMG00000000653 #22	MAU2 (ENSUAMG00000000016) #21	SUGP1 (ENSUAMG00000000010) #22	TM6SF2 (ENSUAMG00000000009) #23	HAPLN4 (ENSUAMG00000000008) #24	NCAN (ENSUAMG00000000007) #25	NR2C2AP (ENSUAMG00000000006) #26	RFXANK (ENSUAMG00000000005) #27	BORCS8 (ENSUAMG00000000004) #28	MEF2B (ENSUAMG00000000003) #29	TMEM161A (ENSUAMG00000000002) #30	SLC25A42 (ENSUAMG00000000001) #31
American black bear	MODERN SPECIES		TMEM42 (ENSUAMG00000001960)	KIF15 (ENSUAMG00000001916)	KIAA1143 (ENSUAMG00000001910)	ZNF501 (ENSUAMG00000001908)	ZNF502 (ENSUAMG00000001904)	ATP13A1 (ENSUAMG00000001148) #12	LPAR2 (ENSUAMG00000001027) #14	PBX4 (ENSUAMG00000000763) #15	CILP2 (ENSUAMG00000000697) #16	YJEFN3 (ENSUAMG00000000690) #17	NDUFA13 (ENSUAMG00000000686) #18	TSSK6 (ENSUAMG00000000680) #19	GATAD2A (ENSUAMG00000000666) #20	ENSUAMG00000000653 #22	MAU2 (ENSUAMG00000000016) #21	SUGP1 (ENSUAMG00000000010) #22	TM6SF2 (ENSUAMG00000000009) #23	HAPLN4 (ENSUAMG00000000008) #24	NCAN (ENSUAMG00000000007) #25	NR2C2AP (ENSUAMG00000000006) #26	RFXANK (ENSUAMG00000000005) #27	BORCS8 (ENSUAMG00000000004) #28	MEF2B (ENSUAMG00000000003) #29	TMEM161A (ENSUAMG00000000002) #30	SLC25A42 (ENSUAMG00000000001) #31
Laurasiatheria_c	ANCESTRAL SPECIES	16					ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Chiroptera	ANCESTRAL SPECIES	44						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Microchiroptera	ANCESTRAL SPECIES	43					ENSGT00940000157178	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Greater horseshoe bat	MODERN SPECIES	9	TMA16 (ENSRFEG00010007959)	ENSRFEG00010007896	MARCHF1 (ENSRFEG00010007829)	LPL (ENSRFEG00010007714)	ENSRFEG00010007665	ATP13A1 (ENSRFEG00010007191) #12	GMIP (ENSRFEG00010007096) #13	LPAR2 (ENSRFEG00010007041) #14	PBX4 (ENSRFEG00010006894) #15	CILP2 (ENSRFEG00010006782) #16	YJEFN3 (ENSRFEG00010006740) #17	NDUFA13 (ENSRFEG00010006692) #18	TSSK6 (ENSRFEG00010006656) #19	GATAD2A (ENSRFEG00010006588) #20	MAU2 (ENSRFEG00010006479) #21	SUGP1 (ENSRFEG00010006391) #22	TM6SF2 (ENSRFEG00010006340) #23	HAPLN4 (ENSRFEG00010006311) #24	NCAN (ENSRFEG00010006275) #25	NR2C2AP (ENSRFEG00010006230) #26	RFXANK (ENSRFEG00010006139) #27	BORCS8 (ENSRFEG00010006052) #28	MEF2B (ENSRFEG00010005974) #29	TMEM161A (ENSRFEG00010005885) #30	SLC25A42 (ENSRFEG00010005823) #31	ARMC6 (ENSRFEG00010005797) #32	SUGP2 (ENSRFEG00010005746) #33	HOMER3 (ENSRFEG00010005693) #34	DDX49 (ENSRFEG00010005585) #35	CERS1 (ENSRFEG00010005439) #37	GDF1 (ENSRFEG00010020888)
Microbat	MODERN SPECIES	1248					ENSMLUG00000026606	LPL (ENSMLUG00000000724)	ATP13A1 (ENSMLUG00000007903) #12	GMIP (ENSMLUG00000023678) #13	LPAR2 (ENSMLUG00000007886) #14	CILP2 (ENSMLUG00000017369) #16	YJEFN3 (ENSMLUG00000017368) #17	NDUFA13 (ENSMLUG00000017367) #18	TSSK6 (ENSMLUG00000017365) #19	GATAD2A (ENSMLUG00000017364) #20	MAU2 (ENSMLUG00000017362) #21	SUGP1 (ENSMLUG00000017360) #22	TM6SF2 (ENSMLUG00000027634) #23	HAPLN4 (ENSMLUG00000017358) #24	NCAN (ENSMLUG00000017356) #25	NR2C2AP (ENSMLUG00000017355) #26	RFXANK (ENSMLUG00000017354) #27	BORCS8 (ENSMLUG00000025095) #28	MEF2B (ENSMLUG00000003299) #29	TMEM161A (ENSMLUG00000017352) #30	SLC25A42 (ENSMLUG00000012208) #31	ENSMLUG00000012203 #32	SUGP2 (ENSMLUG00000012189) #33	ENSMLUG00000025755	HOMER3 (ENSMLUG00000012170) #34	DDX49 (ENSMLUG00000012159) #35	COPE (ENSMLUG00000012147) #36
Megabat	MODERN SPECIES	1678							ATP13A1 (ENSPVAG00000017462) #12	GMIP (ENSPVAG00000017461) #13	LPAR2 (ENSPVAG00000017460) #14	PBX4 (ENSPVAG00000017459) #15	CILP2 (ENSPVAG00000017456) #16	YJEFN3 (ENSPVAG00000017455) #17	NDUFA13 (ENSPVAG00000017454) #18	GATAD2A (ENSPVAG00000017453) #20	MAU2 (ENSPVAG00000017452) #21	SUGP1 (ENSPVAG00000017451) #22	TM6SF2 (ENSPVAG00000017449) #23	HAPLN4 (ENSPVAG00000017448) #24	NCAN (ENSPVAG00000017445) #25	NR2C2AP (ENSPVAG00000017442) #26	RFXANK (ENSPVAG00000017440) #27	MEF2B (ENSPVAG00000017435) #29
Equus	ANCESTRAL SPECIES	23	ENSGT00940000162327	ENSGT00940000163610	ENSGT00940000161175	ENSGT01100000263521.a.a.b.a.b.b	ENSGT00390000018500.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926
Donkey	MODERN SPECIES		ENSEASG00005006758	ENSEASG00005006754	ZNF692 (ENSEASG00005006750)	ZNF672 (ENSEASG00005035295)	ENSEASG00005006747	ENSEASG00005006649 #12	GMIP (ENSEASG00005006622) #13	LPAR2 (ENSEASG00005031542) #14	ENSEASG00005033171 #15	CILP2 (ENSEASG00005006616) #16	YJEFN3 (ENSEASG00005006613) #17	ENSEASG00005028100	TSSK6 (ENSEASG00005006607) #19	GATAD2A (ENSEASG00005006602) #20	MAU2 (ENSEASG00005006596) #21	SUGP1 (ENSEASG00005006593) #22	HAPLN4 (ENSEASG00005006590) #24	NCAN (ENSEASG00005006587) #25	NR2C2AP (ENSEASG00005027263) #26	RFXANK (ENSEASG00005006582) #27	BORCS8 (ENSEASG00005006580) #28	MEF2B (ENSEASG00005006578) #29	TMEM161A (ENSEASG00005006575) #30	SLC25A42 (ENSEASG00005006570) #31	ARMC6 (ENSEASG00005006568) #32	SUGP2 (ENSEASG00005006565) #33	HOMER3 (ENSEASG00005006562) #34	DDX49 (ENSEASG00005006560) #35	COPE (ENSEASG00005006557) #36	CERS1 (ENSEASG00005030456) #37	GDF1 (ENSEASG00005029430)
Horse	MODERN SPECIES	13	ZNF672 (ENSECAG00000013991)	SH3BP5L (ENSECAG00000000789)	ENSECAG00000049438	ENSECAG00000045987	ENSECAG00000040482	ATP13A1 (ENSECAG00000020569) #12	GMIP (ENSECAG00000011647) #13	LPAR2 (ENSECAG00000009148) #14	ENSECAG00000044009 #15	CILP2 (ENSECAG00000000250) #16	YJEFN3 (ENSECAG00000018123) #17	TSSK6 (ENSECAG00000051056) #19	ENSECAG00000017590	GATAD2A (ENSECAG00000012875) #20	MAU2 (ENSECAG00000001359) #21	SUGP1 (ENSECAG00000013871) #22	HAPLN4 (ENSECAG00000020045) #24	NCAN (ENSECAG00000016115) #25	NR2C2AP (ENSECAG00000015219) #26	RFXANK (ENSECAG00000009442) #27	BORCS8 (ENSECAG00000007592) #28	MEF2B (ENSECAG00000022642) #29	TMEM161A (ENSECAG00000013963) #30	SLC25A42 (ENSECAG00000011367) #31	ARMC6 (ENSECAG00000006428) #32	SUGP2 (ENSECAG00000000129) #33	HOMER3 (ENSECAG00000023105) #34	DDX49 (ENSECAG00000012194) #35	COPE (ENSECAG00000024390) #36	CERS1 (ENSECAG00000052582) #37	GDF1 (ENSECAG00000026851)
Euarchontoglires	ANCESTRAL SPECIES	18					ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Primates	ANCESTRAL SPECIES	18					ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Strepsirrhini	DUPLICATION
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00410000025695.a.k #22
Bushbaby	MODERN SPECIES	220	CCDC124 (ENSOGAG00000012293)	SLC5A5 (ENSOGAG00000012290)	RPL18A (ENSOGAG00000031828)	JAK3 (ENSOGAG00000009777)	ENSOGAG00000029158	B3GNT3 (ENSOGAG00000001205)	FCHO1 (ENSOGAG00000006490)	MAP1S (ENSOGAG00000025035)	UNC13A (ENSOGAG00000027473)	COLGALT1 (ENSOGAG00000000093)	NIBAN3 (ENSOGAG00000000092)	PGLS (ENSOGAG00000000091)	SLC27A1 (ENSOGAG00000000089)	NXNL1 (ENSOGAG00000031624)	TMEM221 (ENSOGAG00000003706)	ENSOGAG00000027569 #22	MVB12A (ENSOGAG00000030761)	PLVAP (ENSOGAG00000032556)	GTPBP3 (ENSOGAG00000007014)	ANO8 (ENSOGAG00000007006)	DDA1 (ENSOGAG00000003701)	MRPL34 (ENSOGAG00000028616)	ABHD8 (ENSOGAG00000007003)	ANKLE1 (ENSOGAG00000008404)	BABAM1 (ENSOGAG00000008400)	USHBP1 (ENSOGAG00000008395)	NR2F6 (ENSOGAG00000030281)	MYO9B (ENSOGAG00000008379)	HAUS8 (ENSOGAG00000034468)	ENSOGAG00000031673	F2RL3 (ENSOGAG00000028611)
Strepsirrhini	ANCESTRAL SPECIES	33					ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Lemuriformes	ANCESTRAL SPECIES	45					ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Lemuriformes_a	ANCESTRAL SPECIES	65					ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Coquerels sifaka	MODERN SPECIES	589					ZNF14 (ENSPCOG00000028861)	ATP13A1 (ENSPCOG00000020533) #12	GMIP (ENSPCOG00000026022) #13	LPAR2 (ENSPCOG00000020323) #14	PBX4 (ENSPCOG00000016827) #15	CILP2 (ENSPCOG00000016451) #16	YJEFN3 (ENSPCOG00000028351) #17	NDUFA13 (ENSPCOG00000015544) #18	TSSK6 (ENSPCOG00000012813) #19	GATAD2A (ENSPCOG00000019794) #20	MAU2 (ENSPCOG00000020236) #21	SUGP1 (ENSPCOG00000017524) #22	TM6SF2 (ENSPCOG00000024818) #23	HAPLN4 (ENSPCOG00000023645) #24	NCAN (ENSPCOG00000015066) #25	NR2C2AP (ENSPCOG00000023079) #26	RFXANK (ENSPCOG00000019783) #27	BORCS8 (ENSPCOG00000016887) #28	MEF2B (ENSPCOG00000024251) #29	TMEM161A (ENSPCOG00000012683) #30	SLC25A42 (ENSPCOG00000026001) #31	ARMC6 (ENSPCOG00000017481) #32	SUGP2 (ENSPCOG00000016042) #33	HOMER3 (ENSPCOG00000014798) #34	DDX49 (ENSPCOG00000024973) #35	COPE (ENSPCOG00000015758) #36	GDF1 (ENSPCOG00000015607)
Greater bamboo lemur	MODERN SPECIES	392						GMIP (ENSPSMG00000002524) #13	LPAR2 (ENSPSMG00000002408) #14	PBX4 (ENSPSMG00000002398) #15	ENSPSMG00000002390	CILP2 (ENSPSMG00000002378) #16	YJEFN3 (ENSPSMG00000002364) #17	NDUFA13 (ENSPSMG00000002354) #18	TSSK6 (ENSPSMG00000002343) #19	GATAD2A (ENSPSMG00000002335) #20	MAU2 (ENSPSMG00000002309) #21	SUGP1 (ENSPSMG00000002255) #22	TM6SF2 (ENSPSMG00000002208) #23	HAPLN4 (ENSPSMG00000002199) #24	NCAN (ENSPSMG00000002186) #25	NR2C2AP (ENSPSMG00000002131) #26	RFXANK (ENSPSMG00000002047) #27	BORCS8 (ENSPSMG00000002009) #28	MEF2B (ENSPSMG00000001996) #29	TMEM161A (ENSPSMG00000001938) #30	SLC25A42 (ENSPSMG00000001893) #31	ARMC6 (ENSPSMG00000001861) #32	SUGP2 (ENSPSMG00000001742) #33	HOMER3 (ENSPSMG00000001606) #34	DDX49 (ENSPSMG00000001520) #35	COPE (ENSPSMG00000001405) #36	CERS1 (ENSPSMG00000001173) #37
Mouse lemur	MODERN SPECIES	16	ENSMICG00000038248	ACP5 (ENSMICG00000007032)	ELOF1 (ENSMICG00000011684)	CNN1 (ENSMICG00000011674)	ECSIT (ENSMICG00000043164)	ATP13A1 (ENSMICG00000005954) #12	GMIP (ENSMICG00000005944) #13	LPAR2 (ENSMICG00000047382) #14	PBX4 (ENSMICG00000005939) #15	CILP2 (ENSMICG00000038618) #16	YJEFN3 (ENSMICG00000043804) #17	NDUFA13 (ENSMICG00000027711) #18	TSSK6 (ENSMICG00000031087) #19	GATAD2A (ENSMICG00000015636) #20	MAU2 (ENSMICG00000015603) #21	ENSMICG00000047505 #22	ELAVL3 (ENSMICG00000016528)	PRKCSH (ENSMICG00000009913)	ODAD3 (ENSMICG00000009897)	RGL3 (ENSMICG00000009876)	EPOR (ENSMICG00000034457)	SWSAP1 (ENSMICG00000005683)	PLPPR2 (ENSMICG00000036197)	CCDC159 (ENSMICG00000004075)	TMEM205 (ENSMICG00000044601)	RAB3D (ENSMICG00000031435)	TSPAN16 (ENSMICG00000042148)	DOCK6 (ENSMICG00000004040)	ANGPTL8 (ENSMICG00000042533)	KANK2 (ENSMICG00000004036)	SPC24 (ENSMICG00000045263)
Bushbaby	MODERN SPECIES	220	BMS1 (ENSOGAG00000006511)	ZNF248 (ENSOGAG00000029260)	ENSOGAG00000034716	ZNF25 (ENSOGAG00000032242)	ENSOGAG00000003983	ATP13A1 (ENSOGAG00000002592) #12	GMIP (ENSOGAG00000002588) #13	LPAR2 (ENSOGAG00000034025) #14	PBX4 (ENSOGAG00000007450) #15	CILP2 (ENSOGAG00000028615) #16	YJEFN3 (ENSOGAG00000033582) #17	NDUFA13 (ENSOGAG00000007445) #18	TSSK6 (ENSOGAG00000027271) #19	GATAD2A (ENSOGAG00000007442) #20	MAU2 (ENSOGAG00000009979) #21	ENSOGAG00000009975 #22	TM6SF2 (ENSOGAG00000028833) #23	HAPLN4 (ENSOGAG00000009972) #24	NCAN (ENSOGAG00000010954) #25	NR2C2AP (ENSOGAG00000033463) #26	RFXANK (ENSOGAG00000010950) #27	BORCS8 (ENSOGAG00000028427) #28	MEF2B (ENSOGAG00000001694) #29	TMEM161A (ENSOGAG00000015720) #30	SLC25A42 (ENSOGAG00000007251) #31	ARMC6 (ENSOGAG00000007536) #32	SUGP2 (ENSOGAG00000024068) #33	HOMER3 (ENSOGAG00000008261) #34	DDX49 (ENSOGAG00000008259) #35	COPE (ENSOGAG00000031639) #36	CERS1 (ENSOGAG00000033679) #37
Haplorrhini	ANCESTRAL SPECIES	14					ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000010067	ENSGT00940000161356	ENSGT00390000001014	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Platyrrhini	ANCESTRAL SPECIES	25	ENSGT00390000010067.c	ENSGT00940000161356	ENSGT00390000001014.n	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Mas night monkey	MODERN SPECIES	1353	ENSANAG00000023146	ENSANAG00000002572	ZNF14 (ENSANAG00000032489)	ENSANAG00000000491	ATP13A1 (ENSANAG00000033092) #12	GMIP (ENSANAG00000001734) #13	LPAR2 (ENSANAG00000036455) #14	ENSANAG00000038455	PBX4 (ENSANAG00000032208) #15	CILP2 (ENSANAG00000024220) #16	YJEFN3 (ENSANAG00000026506) #17	NDUFA13 (ENSANAG00000033597) #18	TSSK6 (ENSANAG00000020096) #19	GATAD2A (ENSANAG00000038065) #20	MAU2 (ENSANAG00000026794) #21	SUGP1 (ENSANAG00000028538) #22	TM6SF2 (ENSANAG00000034245) #23	HAPLN4 (ENSANAG00000024057) #24	ENSANAG00000035988 #25	NR2C2AP (ENSANAG00000035166) #26	RFXANK (ENSANAG00000025466) #27	BORCS8 (ENSANAG00000034161) #28	MEF2B (ENSANAG00000020769) #29	TMEM161A (ENSANAG00000034160) #30	SLC25A42 (ENSANAG00000030310) #31	ARMC6 (ENSANAG00000025554) #32	SUGP2 (ENSANAG00000027159) #33	ENSANAG00000020793 #34	DDX49 (ENSANAG00000031415) #35	COPE (ENSANAG00000018604) #36	GDF1 (ENSANAG00000037936)
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000161356	ENSGT00390000001014.n	ENSGT00940000154251.A.a.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Marmoset	MODERN SPECIES	14	ENSCJAG00000072189	ENSCJAG00000071921	ENSCJAG00000060061	ZNF14 (ENSCJAG00000005527)	ZNF101 (ENSCJAG00000005545)	GMIP (ENSCJAG00000005633) #13	LPAR2 (ENSCJAG00000005646) #14	ENSCJAG00000023241	ENSCJAG00000070214	ENSCJAG00000073644	CILP2 (ENSCJAG00000005650) #16	YJEFN3 (ENSCJAG00000005654) #17	ENSCJAG00000043112 #18	GATAD2A (ENSCJAG00000040704) #20	MAU2 (ENSCJAG00000039088) #21	SUGP1 (ENSCJAG00000005755) #22	TM6SF2 (ENSCJAG00000039656) #23	HAPLN4 (ENSCJAG00000073329) #24	ENSCJAG00000070942	NCAN (ENSCJAG00000008512) #25	NR2C2AP (ENSCJAG00000019782) #26	RFXANK (ENSCJAG00000019775) #27	BORCS8 (ENSCJAG00000046526) #28	MEF2B (ENSCJAG00000019767) #29	TMEM161A (ENSCJAG00000019759) #30	SLC25A42 (ENSCJAG00000044017) #31	ARMC6 (ENSCJAG00000019747) #32	SUGP2 (ENSCJAG00000019714) #33	HOMER3 (ENSCJAG00000080144) #34	DDX49 (ENSCJAG00000042114) #35	COPE (ENSCJAG00000019706) #36
Cebidae_a	ANCESTRAL SPECIES	48			ENSGT00940000154251.A.a.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a.g.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Capuchin	MODERN SPECIES	280	ENSCCAG00000033064	ENSCCAG00000016414	ZNF682 (ENSCCAG00000000964)	ZNF14 (ENSCCAG00000035187)	ZNF101 (ENSCCAG00000032395)	ATP13A1 (ENSCCAG00000033311) #12	GMIP (ENSCCAG00000030811) #13	LPAR2 (ENSCCAG00000036944) #14	PBX4 (ENSCCAG00000028260) #15	CILP2 (ENSCCAG00000025104) #16	YJEFN3 (ENSCCAG00000036770) #17	ENSCCAG00000027170 #18	TSSK6 (ENSCCAG00000019676) #19	GATAD2A (ENSCCAG00000036212) #20	MAU2 (ENSCCAG00000031923) #21	SUGP1 (ENSCCAG00000024177) #22	TM6SF2 (ENSCCAG00000030646) #23	HAPLN4 (ENSCCAG00000030280) #24	NCAN (ENSCCAG00000029973) #25	NR2C2AP (ENSCCAG00000034992) #26	RFXANK (ENSCCAG00000034756) #27	BORCS8 (ENSCCAG00000026464) #28	MEF2B (ENSCCAG00000025516) #29	ENSCCAG00000034387 #30	SLC25A42 (ENSCCAG00000028461) #31	ARMC6 (ENSCCAG00000027993) #32	SUGP2 (ENSCCAG00000023178) #33	HOMER3 (ENSCCAG00000024819) #34	DDX49 (ENSCCAG00000036092) #35	COPE (ENSCCAG00000036516) #36	CERS1 (ENSCCAG00000033033) #37
Bolivian squirrel monkey	MODERN SPECIES	199			ENSSBOG00000024223	ZNF14 (ENSSBOG00000029592)	ZNF101 (ENSSBOG00000033857)	ATP13A1 (ENSSBOG00000033381) #12	GMIP (ENSSBOG00000036091) #13	LPAR2 (ENSSBOG00000029005) #14	ENSSBOG00000031282 #15	CILP2 (ENSSBOG00000026211) #16	YJEFN3 (ENSSBOG00000021793) #17	NDUFA13 (ENSSBOG00000019126) #18	TSSK6 (ENSSBOG00000018199) #19	GATAD2A (ENSSBOG00000029481) #20	MAU2 (ENSSBOG00000034577) #21	SUGP1 (ENSSBOG00000020160) #22	TM6SF2 (ENSSBOG00000031897) #23	HAPLN4 (ENSSBOG00000028603) #24	NCAN (ENSSBOG00000033005) #25	NR2C2AP (ENSSBOG00000031337) #26	RFXANK (ENSSBOG00000022019) #27	BORCS8 (ENSSBOG00000022945) #28	MEF2B (ENSSBOG00000024550) #29	TMEM161A (ENSSBOG00000031066) #30	SLC25A42 (ENSSBOG00000024288) #31	ENSSBOG00000024227 #32	SUGP2 (ENSSBOG00000020629) #33	HOMER3 (ENSSBOG00000030722) #34	DDX49 (ENSSBOG00000035812) #35	COPE (ENSSBOG00000014113) #36	CERS1 (ENSSBOG00000000038) #37
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00410000025695.a.m #22
Sooty mangabey	MODERN SPECIES	309	ENSCATG00000045028	LMNB1 (ENSCATG00000034925)	MARCHF3 (ENSCATG00000015290)	ENSCATG00000033679	MEGF10 (ENSCATG00000045270)	PRRC1 (ENSCATG00000031589)	CTXN3 (ENSCATG00000018324)	CCDC192 (ENSCATG00000042132)	SLC12A2 (ENSCATG00000023575)	FBN2 (ENSCATG00000038815)	SLC27A6 (ENSCATG00000007497)	ISOC1 (ENSCATG00000039096)	ADAMTS19 (ENSCATG00000038533)	MINAR2 (ENSCATG00000035432)	CHSY3 (ENSCATG00000038876)	ENSCATG00000035240 #22	ENSCATG00000037620	LYRM7 (ENSCATG00000037078)	CDC42SE2 (ENSCATG00000034894)	RAPGEF6 (ENSCATG00000040471)	FNIP1 (ENSCATG00000036918)	MEIKIN (ENSCATG00000037472)	ACSL6 (ENSCATG00000013697)	IL3 (ENSCATG00000041084)	CSF2 (ENSCATG00000042168)	P4HA2 (ENSCATG00000037172)	PDLIM4 (ENSCATG00000018873)	SLC22A4 (ENSCATG00000039145)	SLC22A5 (ENSCATG00000030925)	ENSCATG00000032180	IRF1 (ENSCATG00000036411)
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000154251.A.a.b	ENSGT00940000162960.A	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162960.A	ENSGT00490000043385.u.a.b	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Hominidae	ANCESTRAL SPECIES		ENSGT00940000162960.A	ENSGT00490000043385.u.a.b	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000162960.A	ENSGT00490000043385.u.a.b	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000162960.A	ENSGT00490000043385.u.a.b	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Pan	ANCESTRAL SPECIES	14	ENSGT00940000162960.A	ENSGT00490000043385.u.a.b	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Bonobo	MODERN SPECIES	10	ENSPPAG00000039166	ENSPPAG00000040622	ENSPPAG00000028827	ZNF14 (ENSPPAG00000036864)	ZNF101 (ENSPPAG00000028690)	ATP13A1 (ENSPPAG00000042644) #12	GMIP (ENSPPAG00000037482) #13	LPAR2 (ENSPPAG00000043772) #14	PBX4 (ENSPPAG00000035891) #15	CILP2 (ENSPPAG00000035758) #16	YJEFN3 (ENSPPAG00000025286) #17	ENSPPAG00000016456 #18	TSSK6 (ENSPPAG00000022354) #19	GATAD2A (ENSPPAG00000003218) #20	MAU2 (ENSPPAG00000032359) #21	SUGP1 (ENSPPAG00000037102) #22	TM6SF2 (ENSPPAG00000043499) #23	HAPLN4 (ENSPPAG00000013291) #24	NCAN (ENSPPAG00000003961) #25	NR2C2AP (ENSPPAG00000008303) #26	RFXANK (ENSPPAG00000032045) #27	BORCS8 (ENSPPAG00000033735) #28	MEF2B (ENSPPAG00000029747) #29	TMEM161A (ENSPPAG00000041901) #30	SLC25A42 (ENSPPAG00000036060) #31	ARMC6 (ENSPPAG00000040716) #32	SUGP2 (ENSPPAG00000043787) #33	HOMER3 (ENSPPAG00000037113) #34	DDX49 (ENSPPAG00000035217) #35	COPE (ENSPPAG00000020767) #36	CERS1 (ENSPPAG00000036380) #37
Chimpanzee	MODERN SPECIES	10	ZNF253 (ENSPTRG00000029074)	ENSPTRG00000045322	ZNF506 (ENSPTRG00000010755)	ZNF14 (ENSPTRG00000022814)	ZNF101 (ENSPTRG00000045970)	ATP13A1 (ENSPTRG00000010747) #12	GMIP (ENSPTRG00000010746) #13	LPAR2 (ENSPTRG00000010745) #14	PBX4 (ENSPTRG00000010744) #15	CILP2 (ENSPTRG00000010743) #16	YJEFN3 (ENSPTRG00000010742) #17	NDUFA13 (ENSPTRG00000010741) #18	ENSPTRG00000043712 #19	GATAD2A (ENSPTRG00000010739) #20	MAU2 (ENSPTRG00000010738) #21	SUGP1 (ENSPTRG00000010737) #22	TM6SF2 (ENSPTRG00000010736) #23	HAPLN4 (ENSPTRG00000033676) #24	NCAN (ENSPTRG00000010734) #25	NR2C2AP (ENSPTRG00000010733) #26	RFXANK (ENSPTRG00000010732) #27	BORCS8 (ENSPTRG00000039907) #28	MEF2B (ENSPTRG00000010731) #29	TMEM161A (ENSPTRG00000010730) #30	SLC25A42 (ENSPTRG00000010729) #31	ARMC6 (ENSPTRG00000010728) #32	SUGP2 (ENSPTRG00000010727) #33	HOMER3 (ENSPTRG00000010726) #34	DDX49 (ENSPTRG00000010725) #35	COPE (ENSPTRG00000010723) #36	CERS1 (ENSPTRG00000039869) #37
Human	MODERN SPECIES	10	ZNF253 (ENSG00000256771)	ZNF506 (ENSG00000081665)	ZNF14 (ENSG00000105708)	ZNF101 (ENSG00000181896)	ATP13A1 (ENSG00000105726) #12	GMIP (ENSG00000089639) #13	LPAR2 (ENSG00000064547) #14	PBX4 (ENSG00000105717) #15	CILP2 (ENSG00000160161) #16	YJEFN3 (ENSG00000250067) #17	ENSG00000258674	NDUFA13 (ENSG00000186010) #18	TSSK6 (ENSG00000178093) #19	GATAD2A (ENSG00000167491) #20	MAU2 (ENSG00000129933) #21	SUGP1 (ENSG00000105705) #22	TM6SF2 (ENSG00000213996) #23	HAPLN4 (ENSG00000187664) #24	NCAN (ENSG00000130287) #25	NR2C2AP (ENSG00000184162) #26	RFXANK (ENSG00000064490) #27	BORCS8 (ENSG00000254901) #28	BORCS8-MEF2B (ENSG00000064489)	MEF2B (ENSG00000213999) #29	TMEM161A (ENSG00000064545) #30	SLC25A42 (ENSG00000181035) #31	ARMC6 (ENSG00000105676) #32	SUGP2 (ENSG00000064607) #33	HOMER3 (ENSG00000051128) #34	DDX49 (ENSG00000105671) #35	COPE (ENSG00000105669) #36
Gorilla	MODERN SPECIES	10	ZNF93 (ENSGGOG00000001955)	ENSGGOG00000043851	ENSGGOG00000022087	ZNF14 (ENSGGOG00000022750)	ZNF101 (ENSGGOG00000006033)	ATP13A1 (ENSGGOG00000006026) #12	GMIP (ENSGGOG00000006016) #13	LPAR2 (ENSGGOG00000006010) #14	PBX4 (ENSGGOG00000006000) #15	CILP2 (ENSGGOG00000005993) #16	YJEFN3 (ENSGGOG00000005985) #17	NDUFA13 (ENSGGOG00000040690) #18	TSSK6 (ENSGGOG00000042656) #19	GATAD2A (ENSGGOG00000005973) #20	MAU2 (ENSGGOG00000002989) #21	SUGP1 (ENSGGOG00000002984) #22	TM6SF2 (ENSGGOG00000002983) #23	HAPLN4 (ENSGGOG00000002981) #24	NCAN (ENSGGOG00000002977) #25	NR2C2AP (ENSGGOG00000012536) #26	RFXANK (ENSGGOG00000012530) #27	BORCS8 (ENSGGOG00000044155) #28	MEF2B (ENSGGOG00000009730) #29	TMEM161A (ENSGGOG00000022481) #30	SLC25A42 (ENSGGOG00000008113) #31	ARMC6 (ENSGGOG00000006708) #32	SUGP2 (ENSGGOG00000013540) #33	HOMER3 (ENSGGOG00000007011) #34	DDX49 (ENSGGOG00000037966) #35	COPE (ENSGGOG00000006987) #36	ENSGGOG00000025662
Orangutan	MODERN SPECIES	10	ZNF682 (ENSPPYG00000040895)	ENSPPYG00000035360	ENSPPYG00000009781	ZNF14 (ENSPPYG00000009778)	ZNF101 (ENSPPYG00000009777)	ATP13A1 (ENSPPYG00000009776) #12	GMIP (ENSPPYG00000009775) #13	LPAR2 (ENSPPYG00000009774) #14	PBX4 (ENSPPYG00000035724) #15	CILP2 (ENSPPYG00000009773) #16	YJEFN3 (ENSPPYG00000009772) #17	NDUFA13 (ENSPPYG00000036460) #18	TSSK6 (ENSPPYG00000009770) #19	GATAD2A (ENSPPYG00000009769) #20	MAU2 (ENSPPYG00000009767) #21	SUGP1 (ENSPPYG00000009766) #22	TM6SF2 (ENSPPYG00000009765) #23	HAPLN4 (ENSPPYG00000009764) #24	NCAN (ENSPPYG00000009763) #25	NR2C2AP (ENSPPYG00000009762) #26	RFXANK (ENSPPYG00000009761) #27	BORCS8 (ENSPPYG00000039532) #28	MEF2B (ENSPPYG00000009760) #29	TMEM161A (ENSPPYG00000009759) #30	SLC25A42 (ENSPPYG00000009758) #31	ARMC6 (ENSPPYG00000009757) #32	SUGP2 (ENSPPYG00000009756) #33	HOMER3 (ENSPPYG00000035001) #34	DDX49 (ENSPPYG00000009755) #35	COPE (ENSPPYG00000009753) #36	CERS1 (ENSPPYG00000029471) #37
Gibbon	MODERN SPECIES		ENSNLEG00000031307	ZNF506 (ENSNLEG00000006340)	ZNF14 (ENSNLEG00000006339)	ZNF101 (ENSNLEG00000006338)	ATP13A1 (ENSNLEG00000006315) #12	ENSNLEG00000006312 #13	PBX4 (ENSNLEG00000006307) #15	ENSNLEG00000034918 #14	ENSNLEG00000018526	CILP2 (ENSNLEG00000006302) #16	YJEFN3 (ENSNLEG00000027046) #17	NDUFA13 (ENSNLEG00000006289) #18	TSSK6 (ENSNLEG00000019216) #19	GATAD2A (ENSNLEG00000006277) #20	MAU2 (ENSNLEG00000026855) #21	SUGP1 (ENSNLEG00000006236) #22	TM6SF2 (ENSNLEG00000006229) #23	HAPLN4 (ENSNLEG00000006225) #24	NCAN (ENSNLEG00000006221) #25	NR2C2AP (ENSNLEG00000006212) #26	RFXANK (ENSNLEG00000006200) #27	ENSNLEG00000006195 #28	MEF2B (ENSNLEG00000006191) #29	ENSNLEG00000006186 #30	SLC25A42 (ENSNLEG00000027898) #31	ENSNLEG00000006185	ARMC6 (ENSNLEG00000006169) #32	SUGP2 (ENSNLEG00000006162) #33	HOMER3 (ENSNLEG00000006154) #34	DDX49 (ENSNLEG00000006136) #35	COPE (ENSNLEG00000006090) #36
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000162960.A	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000162960.A.c	ENSGT01100000263495.E	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Vervet Monkey	MODERN SPECIES	25	ZNF682 (ENSCSAG00000005029)	ENSCSAG00000005034	ENSCSAG00000005037	ENSCSAG00000005039	ZNF14 (ENSCSAG00000005044)	ZNF101 (ENSCSAG00000005048)	ATP13A1 (ENSCSAG00000005054) #12	GMIP (ENSCSAG00000005061) #13	LPAR2 (ENSCSAG00000005063) #14	PBX4 (ENSCSAG00000005070) #15	CILP2 (ENSCSAG00000005072) #16	NDUFA13 (ENSCSAG00000005084) #18	TSSK6 (ENSCSAG00000018500) #19	GATAD2A (ENSCSAG00000005096) #20	MAU2 (ENSCSAG00000005122) #21	SUGP1 (ENSCSAG00000005148) #22	TM6SF2 (ENSCSAG00000005157) #23	HAPLN4 (ENSCSAG00000005162) #24	NCAN (ENSCSAG00000005190) #25	NR2C2AP (ENSCSAG00000005205) #26	RFXANK (ENSCSAG00000005210) #27	BORCS8 (ENSCSAG00000005214) #28	MEF2B (ENSCSAG00000005217) #29	TMEM161A (ENSCSAG00000005220) #30	SLC25A42 (ENSCSAG00000005223) #31	ARMC6 (ENSCSAG00000005225) #32	SUGP2 (ENSCSAG00000005226) #33	HOMER3 (ENSCSAG00000005233) #34	DDX49 (ENSCSAG00000005251) #35	COPE (ENSCSAG00000005262) #36	CERS1 (ENSCSAG00000005267) #37
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000162960.A.c	ENSGT01100000263495.E	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000162960.A.c	ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Pig-tailed macaque	MODERN SPECIES	76	ZNF506 (ENSMNEG00000037374)	ZNF14 (ENSMNEG00000020785)	ENSMNEG00000042306	ZNF101 (ENSMNEG00000034981)	ATP13A1 (ENSMNEG00000029828) #12	GMIP (ENSMNEG00000042233) #13	LPAR2 (ENSMNEG00000042518) #14	PBX4 (ENSMNEG00000041601) #15	ENSMNEG00000010618	CILP2 (ENSMNEG00000034197) #16	YJEFN3 (ENSMNEG00000037092) #17	NDUFA13 (ENSMNEG00000039567) #18	TSSK6 (ENSMNEG00000009045) #19	ENSMNEG00000043233 #20	MAU2 (ENSMNEG00000034232) #21	SUGP1 (ENSMNEG00000042010) #22	TM6SF2 (ENSMNEG00000043588) #23	HAPLN4 (ENSMNEG00000034804) #24	NCAN (ENSMNEG00000029669) #25	RFXANK (ENSMNEG00000025165) #27	NR2C2AP (ENSMNEG00000037479) #26	BORCS8 (ENSMNEG00000033374) #28	MEF2B (ENSMNEG00000041102) #29	TMEM161A (ENSMNEG00000027465) #30	SLC25A42 (ENSMNEG00000043911) #31	ENSMNEG00000030397	ARMC6 (ENSMNEG00000043051) #32	SUGP2 (ENSMNEG00000043062) #33	HOMER3 (ENSMNEG00000042042) #34	DDX49 (ENSMNEG00000029654) #35	COPE (ENSMNEG00000031787) #36
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000154251.A.a.b	ENSGT00940000162960.A.c	ENSGT00940000153236.a.a.b.b	ENSGT00940000165497.F.b.b.a.a.a	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926
Rhesus	MODERN SPECIES	10	ZNF93 (ENSMMUG00000054055)	ENSMMUG00000061017	ZNF506 (ENSMMUG00000028833)	ENSMMUG00000062373	ZNF14 (ENSMMUG00000021989)	ENSMMUG00000005860	ATP13A1 (ENSMMUG00000043400) #12	GMIP (ENSMMUG00000003036) #13	LPAR2 (ENSMMUG00000000654) #14	PBX4 (ENSMMUG00000048108) #15	CILP2 (ENSMMUG00000011352) #16	YJEFN3 (ENSMMUG00000011351) #17	TSSK6 (ENSMMUG00000049072) #19	GATAD2A (ENSMMUG00000003164) #20	MAU2 (ENSMMUG00000008931) #21	SUGP1 (ENSMMUG00000028834) #22	TM6SF2 (ENSMMUG00000008576) #23	HAPLN4 (ENSMMUG00000008578) #24	NCAN (ENSMMUG00000062498) #25	NR2C2AP (ENSMMUG00000010723) #26	RFXANK (ENSMMUG00000010722) #27	BORCS8 (ENSMMUG00000018368) #29	TMEM161A (ENSMMUG00000018367) #30	SLC25A42 (ENSMMUG00000019669) #31	ARMC6 (ENSMMUG00000019668) #32	SUGP2 (ENSMMUG00000019665) #33	HOMER3 (ENSMMUG00000023294) #34	DDX49 (ENSMMUG00000023293) #35	COPE (ENSMMUG00000023291) #36	CERS1 (ENSMMUG00000059247) #37	GDF1 (ENSMMUG00000023290)
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000003085 #20	ENSMFAG00000039432	ZNF93 (ENSMFAG00000035382)	ZNF506 (ENSMFAG00000039702)	ENSMFAG00000056328	ZNF14 (ENSMFAG00000042563)	ZNF101 (ENSMFAG00000042473)	ATP13A1 (ENSMFAG00000045331) #12	LPAR2 (ENSMFAG00000040780) #14	GMIP (ENSMFAG00000046087) #13	PBX4 (ENSMFAG00000031948) #15	CILP2 (ENSMFAG00000064577) #16	YJEFN3 (ENSMFAG00000011503) #17	ENSMFAG00000002152 #20	MAU2 (ENSMFAG00000041829) #21	SUGP1 (ENSMFAG00000031157) #22	TM6SF2 (ENSMFAG00000006917) #23	HAPLN4 (ENSMFAG00000029816) #24	NCAN (ENSMFAG00000043588) #25	NR2C2AP (ENSMFAG00000042311) #26	RFXANK (ENSMFAG00000003753) #27	MEF2B (ENSMFAG00000032755) #29	SLC25A42 (ENSMFAG00000039473) #31	TMEM161A (ENSMFAG00000043553) #30	ARMC6 (ENSMFAG00000000505) #32	SUGP2 (ENSMFAG00000040352) #33	HOMER3 (ENSMFAG00000031509) #34	DDX49 (ENSMFAG00000044697) #35	COPE (ENSMFAG00000038870) #36	GDF1 (ENSMFAG00000064570)	CERS1 (ENSMFAG00000044990) #37
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000162960.A.c	ENSGT01100000263495.E	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Olive baboon	MODERN SPECIES	12	ZNF682 (ENSPANG00000017939)	ZNF93 (ENSPANG00000015321)	ENSPANG00000046193	ZNF506 (ENSPANG00000007279)	ZNF14 (ENSPANG00000006684)	ATP13A1 (ENSPANG00000003160) #12	GMIP (ENSPANG00000020293) #13	LPAR2 (ENSPANG00000020387) #14	PBX4 (ENSPANG00000004463) #15	CILP2 (ENSPANG00000002530) #16	YJEFN3 (ENSPANG00000015322) #17	NDUFA13 (ENSPANG00000001628) #18	TSSK6 (ENSPANG00000005919) #19	GATAD2A (ENSPANG00000011632) #20	MAU2 (ENSPANG00000002876) #21	SUGP1 (ENSPANG00000014398) #22	TM6SF2 (ENSPANG00000017375) #23	HAPLN4 (ENSPANG00000004385) #24	NCAN (ENSPANG00000017942) #25	NR2C2AP (ENSPANG00000017708) #26	RFXANK (ENSPANG00000011633) #27	BORCS8 (ENSPANG00000034354) #28	MEF2B (ENSPANG00000023043) #29	TMEM161A (ENSPANG00000023920) #30	SLC25A42 (ENSPANG00000004441) #31	ARMC6 (ENSPANG00000002531) #32	SUGP2 (ENSPANG00000004442) #33	HOMER3 (ENSPANG00000004386) #34	DDX49 (ENSPANG00000003161) #35	COPE (ENSPANG00000002532) #36	CERS1 (ENSPANG00000005280) #37
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000162960.A.c	ENSGT01100000263495.E	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Sooty mangabey	MODERN SPECIES	347	ENSCATG00000039728 #20	ZNF93 (ENSCATG00000042867)	ENSCATG00000037145	ZNF14 (ENSCATG00000028572)	ZNF101 (ENSCATG00000020203)	ATP13A1 (ENSCATG00000034481) #12	GMIP (ENSCATG00000030063) #13	LPAR2 (ENSCATG00000036510) #14	PBX4 (ENSCATG00000035336) #15	CILP2 (ENSCATG00000040476) #16	YJEFN3 (ENSCATG00000037712) #17	NDUFA13 (ENSCATG00000038956) #18	TSSK6 (ENSCATG00000003439) #19	ENSCATG00000035199 #20	MAU2 (ENSCATG00000015302) #21	SUGP1 (ENSCATG00000033059) #22	TM6SF2 (ENSCATG00000038371) #23	HAPLN4 (ENSCATG00000033215) #24	NCAN (ENSCATG00000033037) #25	NR2C2AP (ENSCATG00000035313) #26	RFXANK (ENSCATG00000032949) #27	BORCS8 (ENSCATG00000034039) #28	MEF2B (ENSCATG00000031174) #29	TMEM161A (ENSCATG00000036119) #30	SLC25A42 (ENSCATG00000035155) #31	ARMC6 (ENSCATG00000032065) #32	SUGP2 (ENSCATG00000029755) #33	HOMER3 (ENSCATG00000036483) #34	DDX49 (ENSCATG00000032577) #35	COPE (ENSCATG00000038467) #36	CERS1 (ENSCATG00000033850) #37
Drill	MODERN SPECIES	160	ENSMLEG00000039824	ZNF506 (ENSMLEG00000035015)	ZNF14 (ENSMLEG00000024882)	ENSMLEG00000034754	ZNF101 (ENSMLEG00000038564)	ATP13A1 (ENSMLEG00000038891) #12	GMIP (ENSMLEG00000015104) #13	LPAR2 (ENSMLEG00000038948) #14	ENSMLEG00000038352	PBX4 (ENSMLEG00000028081) #15	CILP2 (ENSMLEG00000038834) #16	NDUFA13 (ENSMLEG00000027225) #18	TSSK6 (ENSMLEG00000010320) #19	GATAD2A (ENSMLEG00000040547) #20	MAU2 (ENSMLEG00000035371) #21	SUGP1 (ENSMLEG00000043364) #22	TM6SF2 (ENSMLEG00000027647) #23	HAPLN4 (ENSMLEG00000043866) #24	NCAN (ENSMLEG00000035960) #25	NR2C2AP (ENSMLEG00000026610) #26	RFXANK (ENSMLEG00000007628) #27	BORCS8 (ENSMLEG00000036175) #28	MEF2B (ENSMLEG00000002780) #29	TMEM161A (ENSMLEG00000041570) #30	SLC25A42 (ENSMLEG00000038599) #31	ARMC6 (ENSMLEG00000039585) #32	SUGP2 (ENSMLEG00000036719) #33	HOMER3 (ENSMLEG00000042234) #34	DDX49 (ENSMLEG00000042550) #35	COPE (ENSMLEG00000042923) #36	CERS1 (ENSMLEG00000020659) #37
Rhinopithecus	ANCESTRAL SPECIES			ENSGT00940000153236.a.a.b.b	ENSGT00950000182755.b.a.a.a.a.a.b.d.a	ENSGT00390000007479.y.b	ENSGT00950000182755.b.a.a.b.a.b.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Black snub-nosed monkey	MODERN SPECIES	1576			ENSRBIG00000030741	ZNF14 (ENSRBIG00000042038)	ZNF101 (ENSRBIG00000029302)	ATP13A1 (ENSRBIG00000028613) #12	GMIP (ENSRBIG00000034503) #13	LPAR2 (ENSRBIG00000028307) #14	PBX4 (ENSRBIG00000043379) #15	CILP2 (ENSRBIG00000033619) #16	YJEFN3 (ENSRBIG00000044837) #17	NDUFA13 (ENSRBIG00000029310) #18	TSSK6 (ENSRBIG00000020631) #19	ENSRBIG00000029752 #20	MAU2 (ENSRBIG00000036077) #21	SUGP1 (ENSRBIG00000035555) #22	TM6SF2 (ENSRBIG00000035648) #23	HAPLN4 (ENSRBIG00000028696) #24	NCAN (ENSRBIG00000028711) #25	RFXANK (ENSRBIG00000027696) #27	NR2C2AP (ENSRBIG00000035480) #26	BORCS8 (ENSRBIG00000044655) #28	MEF2B (ENSRBIG00000037482) #29	TMEM161A (ENSRBIG00000035635) #30	SLC25A42 (ENSRBIG00000027977) #31	ENSRBIG00000034545	ARMC6 (ENSRBIG00000038109) #32	SUGP2 (ENSRBIG00000020354) #33	HOMER3 (ENSRBIG00000038778) #34	DDX49 (ENSRBIG00000030758) #35	COPE (ENSRBIG00000040843) #36
Golden snub-nosed monkey	MODERN SPECIES	2586		ZNF506 (ENSRROG00000034835)	ZNF14 (ENSRROG00000034519)	ENSRROG00000040378	ZNF101 (ENSRROG00000034698)	ATP13A1 (ENSRROG00000033237) #12	GMIP (ENSRROG00000033996) #13	LPAR2 (ENSRROG00000044369) #14	PBX4 (ENSRROG00000033089) #15	CILP2 (ENSRROG00000044306) #16	YJEFN3 (ENSRROG00000040358) #17	NDUFA13 (ENSRROG00000043641) #18	TSSK6 (ENSRROG00000027240) #19	ENSRROG00000031855 #20	MAU2 (ENSRROG00000032649) #21	SUGP1 (ENSRROG00000030048) #22	TM6SF2 (ENSRROG00000036675) #23	HAPLN4 (ENSRROG00000029649) #24	NCAN (ENSRROG00000037872) #25	NR2C2AP (ENSRROG00000033994) #26	RFXANK (ENSRROG00000028283) #27	BORCS8 (ENSRROG00000045680) #28	MEF2B (ENSRROG00000033740) #29	TMEM161A (ENSRROG00000024629) #30	SLC25A42 (ENSRROG00000040352) #31	ARMC6 (ENSRROG00000034739) #32	SUGP2 (ENSRROG00000029264) #33	HOMER3 (ENSRROG00000038822) #34	DDX49 (ENSRROG00000032460) #35	COPE (ENSRROG00000032396) #36	CERS1 (ENSRROG00000038529) #37
Catarrhini	ANCESTRAL SPECIES																	ENSGT00410000025695.a.n.b #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00410000025695.a.n.b #22
Rhinopithecus	ANCESTRAL SPECIES	856																ENSGT00410000025695.a.n.b #22	ENSGT00940000162576	ENSGT00940000154158.k.b.b.a.b
Golden snub-nosed monkey	MODERN SPECIES	1897																ENSRROG00000031017 #22	ATXN7L3B (ENSRROG00000013750)	ENSRROG00000033934
Black snub-nosed monkey	MODERN SPECIES	118																ENSRBIG00000037600 #22	ATXN7L3B (ENSRBIG00000018753)	ENSRBIG00000042017
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00410000025695.a.n.b #22
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00530000063626.b	ENSGT00390000001285	ENSGT00950000183039.A	ENSGT00940000156088	ENSGT00940000157212.B	ENSGT00940000158153	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214	ENSGT00390000001116	ENSGT00940000161088	ENSGT00390000017998	ENSGT00940000156786	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000155878	ENSGT00410000025695.a.n.b #22	ENSGT00940000162576	ENSGT00910000147024	ENSGT00940000157371	ENSGT00940000159670	ENSGT00940000162547	ENSGT00940000162357	ENSGT00940000160727	ENSGT00390000018775	ENSGT00390000017839.o.b.b.b.f	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622	ENSGT01050000244986.b.b.d.a.a.b
Macaca	ANCESTRAL SPECIES	6	ENSGT00530000063626.b	ENSGT00390000001285	ENSGT00950000183039.A	ENSGT00940000156088	ENSGT00940000157212.B	ENSGT00940000158153	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214	ENSGT00390000001116	ENSGT00940000161088	ENSGT00390000017998	ENSGT00940000156786	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000155878	ENSGT00410000025695.a.n.b #22	ENSGT00940000162576	ENSGT00910000147024	ENSGT00940000157371	ENSGT00940000159670	ENSGT00940000162547	ENSGT00940000162357	ENSGT00940000160727	ENSGT00390000018775	ENSGT00440000039564.b	ENSGT00940000153362.a.lb	ENSGT00390000002417	ENSGT00960000192410	ENSGT00940000156622	ENSGT01050000244986.b.b.d.a.a.b	ENSGT00390000009168.hb
Pig-tailed macaque	MODERN SPECIES	517	CNOT2 (ENSMNEG00000045426)	KCNMB4 (ENSMNEG00000039891)	PTPRB (ENSMNEG00000033910)	ENSMNEG00000030996	PTPRR (ENSMNEG00000031531)	TSPAN8 (ENSMNEG00000043021)	ENSMNEG00000005986	LGR5 (ENSMNEG00000043876)	ZFC3H1 (ENSMNEG00000008807)	THAP2 (ENSMNEG00000038799)	TMEM19 (ENSMNEG00000032989)	RAB21 (ENSMNEG00000037678)	TBC1D15 (ENSMNEG00000044834)	TPH2 (ENSMNEG00000036855)	TRHDE (ENSMNEG00000038410)	ENSMNEG00000035574 #22	ATXN7L3B (ENSMNEG00000006304)	ENSMNEG00000002104	KCNC2 (ENSMNEG00000035997)	CAPS2 (ENSMNEG00000011146)	GLIPR1L1 (ENSMNEG00000028603)	GLIPR1L2 (ENSMNEG00000044396)	GLIPR1 (ENSMNEG00000044536)	ENSMNEG00000034922	ENSMNEG00000045114	ENSMNEG00000040738	PHLDA1 (ENSMNEG00000033607)	NAP1L1 (ENSMNEG00000035793)	BBS10 (ENSMNEG00000040224)	ENSMNEG00000030308	OSBPL8 (ENSMNEG00000028835)
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00530000063626.b	ENSGT00390000001285	ENSGT00950000183039.A	ENSGT00940000156088	ENSGT00940000157212.B	ENSGT00940000158153	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214	ENSGT00390000001116	ENSGT00940000161088	ENSGT00390000017998	ENSGT00940000156786	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000155878	ENSGT00410000025695.a.n.b #22	ENSGT00940000162576	ENSGT00940000157371	ENSGT00940000159670	ENSGT00940000162547	ENSGT00940000162357	ENSGT00940000160727	ENSGT00390000018775	ENSGT00940000158854.ab.a	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622	ENSGT00390000009168.hb	ENSGT00530000063074.b.b	ENSGT00940000154980
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00530000063626.b	ENSGT00390000001285	ENSGT00950000183039.A	ENSGT00940000156088	ENSGT00940000157212.B	ENSGT00940000158153	ENSGT00390000005727.a.b.b.cb	ENSGT00940000160214	ENSGT00390000001116	ENSGT00940000161088	ENSGT00390000017998	ENSGT00940000156786	ENSGT00940000156429	ENSGT00950000182885.A.b	ENSGT00940000155878	ENSGT00410000025695.a.n.b #22	ENSGT00940000162576	ENSGT00940000157371	ENSGT00940000159670	ENSGT00940000162547	ENSGT00940000162357	ENSGT00940000160727	ENSGT00390000018775	ENSGT00390000018052.k	ENSGT00940000158854.ab.a	ENSGT00440000039564.b	ENSGT00940000153362.a	ENSGT00390000002417	ENSGT00940000156622	ENSGT00390000009168.hb	ENSGT00530000063074.b.b
Sooty mangabey	MODERN SPECIES	582	KCNMB4 (ENSCATG00000026892)	PTPRB (ENSCATG00000033946)	PTPRR (ENSCATG00000040356)	ENSCATG00000032640	TSPAN8 (ENSCATG00000031127)	ENSCATG00000032435	LGR5 (ENSCATG00000039556)	ZFC3H1 (ENSCATG00000016321)	THAP2 (ENSCATG00000038126)	TMEM19 (ENSCATG00000035854)	RAB21 (ENSCATG00000029219)	TBC1D15 (ENSCATG00000032820)	ENSCATG00000033175	TPH2 (ENSCATG00000037085)	TRHDE (ENSCATG00000005594)	ENSCATG00000033580 #22	ATXN7L3B (ENSCATG00000002045)	KCNC2 (ENSCATG00000034752)	CAPS2 (ENSCATG00000044038)	GLIPR1L1 (ENSCATG00000035838)	GLIPR1L2 (ENSCATG00000032595)	GLIPR1 (ENSCATG00000007700)	KRR1 (ENSCATG00000038219)	ENSCATG00000040362	ENSCATG00000010102	NAP1L1 (ENSCATG00000032285)	ENSCATG00000039964	BBS10 (ENSCATG00000042101)	OSBPL8 (ENSCATG00000036635)	ENSCATG00000005498	ENSCATG00000039522
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5844																ENSTSYG00000033354 #22
Tarsier	MODERN SPECIES	4863											YJEFN3 (ENSTSYG00000036056) #17	NDUFA13 (ENSTSYG00000012695) #18	TSSK6 (ENSTSYG00000027337) #19	GATAD2A (ENSTSYG00000000285) #20	MAU2 (ENSTSYG00000005181) #21	SUGP1 (ENSTSYG00000005329) #22	TM6SF2 (ENSTSYG00000029039) #23
Euarchontoglires_A	ANCESTRAL SPECIES	20					ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Tree shrew	MODERN SPECIES	118																ENSTBEG00000016501 #22
Glires	ANCESTRAL SPECIES	21					ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Rodentia	ANCESTRAL SPECIES	17						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Rodentia_A	ANCESTRAL SPECIES	16						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00940000158279	ENSGT00940000159742	ENSGT00940000160737	ENSGT00390000000410	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b ##11	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000160737	ENSGT00390000000410	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b ##11	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.b ##11	ENSGT00950000182755.b.a.a.b.a.a.l	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Alpin marmot	MODERN SPECIES	24	ENSMMMG00000003867 ##11	ENSMMMG00000003860 ##11	ENSMMMG00000003852 ##11	ENSMMMG00000003843	ATP13A1 (ENSMMMG00000003751) #12	GMIP (ENSMMMG00000003685) #13	LPAR2 (ENSMMMG00000003676) #14	ENSMMMG00000003669	PBX4 (ENSMMMG00000003652) #15	CILP2 (ENSMMMG00000003635) #16	YJEFN3 (ENSMMMG00000003614) #17	NDUFA13 (ENSMMMG00000003609) #18	TSSK6 (ENSMMMG00000003603) #19	GATAD2A (ENSMMMG00000003539) #20	MAU2 (ENSMMMG00000003432) #21	SUGP1 (ENSMMMG00000003416) #22	TM6SF2 (ENSMMMG00000003397) #23	HAPLN4 (ENSMMMG00000003386) #24	NCAN (ENSMMMG00000003066) #25	NR2C2AP (ENSMMMG00000003044) #26	RFXANK (ENSMMMG00000003029) #27	BORCS8 (ENSMMMG00000003015) #28	MEF2B (ENSMMMG00000002982) #29	TMEM161A (ENSMMMG00000002937) #30	SLC25A42 (ENSMMMG00000002914) #31	ARMC6 (ENSMMMG00000002877) #32	SUGP2 (ENSMMMG00000002743) #33	HOMER3 (ENSMMMG00000002691) #34	DDX49 (ENSMMMG00000002658) #35	COPE (ENSMMMG00000002634) #36	CERS1 (ENSMMMG00000002619) #37
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00940000160737	ENSGT00390000000410	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.a.b ##11	ENSGT00960000186612.B.a.b.a.b.a.b.i.a.b ##11	ENSGT00950000182755.b.a.a.b.a.a.l	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Arctic ground squirrel	MODERN SPECIES	73	CDC25A (ENSUPAG00010017812)	ENSUPAG00010017839	CAMP (ENSUPAG00010017843)	ENSUPAG00010017852 ##11	ENSUPAG00010017854 ##11	ENSUPAG00010017861	ATP13A1 (ENSUPAG00010017873) #12	GMIP (ENSUPAG00010017934) #13	LPAR2 (ENSUPAG00010017989) #14	PBX4 (ENSUPAG00010017995) #15	CILP2 (ENSUPAG00010018008) #16	YJEFN3 (ENSUPAG00010018017) #17	TSSK6 (ENSUPAG00010018027) #19	GATAD2A (ENSUPAG00010018036) #20	MAU2 (ENSUPAG00010018075) #21	SUGP1 (ENSUPAG00010018104) #22	TM6SF2 (ENSUPAG00010018116) #23	HAPLN4 (ENSUPAG00010018121) #24	NCAN (ENSUPAG00010018127) #25	NR2C2AP (ENSUPAG00010018146) #26	RFXANK (ENSUPAG00010018152) #27	BORCS8 (ENSUPAG00010018165) #28	MEF2B (ENSUPAG00010018172) #29	TMEM161A (ENSUPAG00010018179) #30	SLC25A42 (ENSUPAG00010018191) #31	ARMC6 (ENSUPAG00010018208) #32	SUGP2 (ENSUPAG00010018216) #33	HOMER3 (ENSUPAG00010018230) #34	DDX49 (ENSUPAG00010018246) #35	COPE (ENSUPAG00010018276) #36	CERS1 (ENSUPAG00010018294) #37
Squirrel	MODERN SPECIES	196	ENSSTOG00000024015	CDC25A (ENSSTOG00000015144)	ENSSTOG00000034924	CAMP (ENSSTOG00000015157)	ATP13A1 (ENSSTOG00000007205) #12	GMIP (ENSSTOG00000007176) #13	LPAR2 (ENSSTOG00000021678) #14	PBX4 (ENSSTOG00000007166) #15	ENSSTOG00000019762	CILP2 (ENSSTOG00000026823) #16	YJEFN3 (ENSSTOG00000023979) #17	NDUFA13 (ENSSTOG00000022888) #18	TSSK6 (ENSSTOG00000021351) #19	GATAD2A (ENSSTOG00000022640) #20	MAU2 (ENSSTOG00000001026) #21	SUGP1 (ENSSTOG00000001020) #22	TM6SF2 (ENSSTOG00000025054) #23	HAPLN4 (ENSSTOG00000007240) #24	NCAN (ENSSTOG00000001012) #25	NR2C2AP (ENSSTOG00000001006) #26	RFXANK (ENSSTOG00000024080) #27	BORCS8 (ENSSTOG00000025422) #28	MEF2B (ENSSTOG00000005895) #29	TMEM161A (ENSSTOG00000005867) #30	SLC25A42 (ENSSTOG00000022047) #31	ARMC6 (ENSSTOG00000012997) #32	SUGP2 (ENSSTOG00000026887) #33	HOMER3 (ENSSTOG00000029095) #34	DDX49 (ENSSTOG00000006749) #35	COPE (ENSSTOG00000006736) #36	CERS1 (ENSSTOG00000029010) #37
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005018685 ##11	ZNF670 (ENSSVLG00005018638)	ENSSVLG00005018591	ENSSVLG00005018572	ENSSVLG00005018537	ATP13A1 (ENSSVLG00005018497) #12	GMIP (ENSSVLG00005018416) #13	LPAR2 (ENSSVLG00005018364) #14	PBX4 (ENSSVLG00005018272) #15	CILP2 (ENSSVLG00005018243) #16	YJEFN3 (ENSSVLG00005018175) #17	NDUFA13 (ENSSVLG00005018132) #18	TSSK6 (ENSSVLG00005018119) #19	GATAD2A (ENSSVLG00005018054) #20	MAU2 (ENSSVLG00005017993) #21	SUGP1 (ENSSVLG00005017843) #22	TM6SF2 (ENSSVLG00005017792) #23	HAPLN4 (ENSSVLG00005017756) #24	ENSSVLG00005017692	NCAN (ENSSVLG00005017503) #25	NR2C2AP (ENSSVLG00005017403) #26	RFXANK (ENSSVLG00005017362) #27	BORCS8 (ENSSVLG00005017305) #28	MEF2B (ENSSVLG00005017215) #29	TMEM161A (ENSSVLG00005017057) #30	SLC25A42 (ENSSVLG00005017005) #31	ARMC6 (ENSSVLG00005016951) #32	SUGP2 (ENSSVLG00005016823) #33	HOMER3 (ENSSVLG00005016701) #34	DDX49 (ENSSVLG00005016654) #35	COPE (ENSSVLG00005016567) #36
Hystricomorpha	ANCESTRAL SPECIES	47							ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00940000157924	ENSGT00390000013811	ENSGT00940000160466	ENSGT00940000161678	ENSGT00940000157246	ENSGT01030000234542.b.b.a.a.a.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00940000157924	ENSGT00390000013811	ENSGT00940000160466	ENSGT00940000161678	ENSGT00940000157246	ENSGT01030000234542.b.b.a.a.a.b	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Long-tailed chinchilla	MODERN SPECIES	231	TPM4 (ENSCLAG00000006213)	ENSCLAG00000006263	ENSCLAG00000006498	DDX11 (ENSCLAG00000007090)	ENSCLAG00000007229	ENSCLAG00000007428	ATP13A1 (ENSCLAG00000009549) #12	GMIP (ENSCLAG00000008010) #13	LPAR2 (ENSCLAG00000016969) #14	CILP2 (ENSCLAG00000015928) #16	YJEFN3 (ENSCLAG00000016158) #17	NDUFA13 (ENSCLAG00000016915) #18	TSSK6 (ENSCLAG00000018107) #19	GATAD2A (ENSCLAG00000010160) #20	MAU2 (ENSCLAG00000006535) #21	SUGP1 (ENSCLAG00000003512) #22	TM6SF2 (ENSCLAG00000003633) #23	HAPLN4 (ENSCLAG00000003955) #24	NCAN (ENSCLAG00000004140) #25	NR2C2AP (ENSCLAG00000004378) #26	RFXANK (ENSCLAG00000004632) #27	BORCS8 (ENSCLAG00000004959) #28	MEF2B (ENSCLAG00000007377) #29	TMEM161A (ENSCLAG00000007578) #30	SLC25A42 (ENSCLAG00000008004) #31	ARMC6 (ENSCLAG00000008215) #32	SUGP2 (ENSCLAG00000011375) #33	HOMER3 (ENSCLAG00000011599) #34	DDX49 (ENSCLAG00000012844) #35	COPE (ENSCLAG00000003621) #36	CERS1 (ENSCLAG00000003897) #37
Degu	MODERN SPECIES	323			ENSODEG00000011437	ENSODEG00000010301	ENSODEG00000011452	ENSODEG00000019897	ATP13A1 (ENSODEG00000010691) #12	GMIP (ENSODEG00000010205) #13	LPAR2 (ENSODEG00000010920) #14	CILP2 (ENSODEG00000010764) #16	YJEFN3 (ENSODEG00000011107) #17	NDUFA13 (ENSODEG00000013435) #18	TSSK6 (ENSODEG00000020032) #19	GATAD2A (ENSODEG00000013506) #20	MAU2 (ENSODEG00000012887) #21	SUGP1 (ENSODEG00000011538) #22	TM6SF2 (ENSODEG00000010936) #23	HAPLN4 (ENSODEG00000011689) #24	NCAN (ENSODEG00000011699) #25	NR2C2AP (ENSODEG00000011486) #26	RFXANK (ENSODEG00000013006) #27	BORCS8 (ENSODEG00000013003) #28	MEF2B (ENSODEG00000012357) #29	TMEM161A (ENSODEG00000012343) #30	SLC25A42 (ENSODEG00000012168) #31	ARMC6 (ENSODEG00000012613) #32	SUGP2 (ENSODEG00000012058) #33	HOMER3 (ENSODEG00000014870) #34	DDX49 (ENSODEG00000011203) #35	COPE (ENSODEG00000011547) #36	CERS1 (ENSODEG00000011214) #37
Guinea pig	MODERN SPECIES	72						ENSCPOG00000022796	ATP13A1 (ENSCPOG00000011167) #12	GMIP (ENSCPOG00000011161) #13	LPAR2 (ENSCPOG00000012652) #14	CILP2 (ENSCPOG00000007219) #16	YJEFN3 (ENSCPOG00000023842) #17	NDUFA13 (ENSCPOG00000019995) #18	TSSK6 (ENSCPOG00000024320) #19	GATAD2A (ENSCPOG00000015396) #20	MAU2 (ENSCPOG00000003755) #21	SUGP1 (ENSCPOG00000007797) #22	TM6SF2 (ENSCPOG00000022916) #23	HAPLN4 (ENSCPOG00000023683) #24	NR2C2AP (ENSCPOG00000032927) #26	RFXANK (ENSCPOG00000003121) #27	BORCS8 (ENSCPOG00000036178) #28	MEF2B (ENSCPOG00000032781) #29	TMEM161A (ENSCPOG00000013640) #30	SLC25A42 (ENSCPOG00000013086) #31	ARMC6 (ENSCPOG00000006374) #32	SUGP2 (ENSCPOG00000006372) #33	HOMER3 (ENSCPOG00000004565) #34	DDX49 (ENSCPOG00000013626) #35	COPE (ENSCPOG00000013624) #36	CERS1 (ENSCPOG00000033783) #37	GDF1 (ENSCPOG00000031791)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000020580	ENSHGLG00000049921	ENSHGLG00000039559	ENSHGLG00000046812	ENSHGLG00000044603	ENSHGLG00000042271	ENSHGLG00000003184	ENSHGLG00000013806 #13	LPAR2 (ENSHGLG00000035704) #14	CILP2 (ENSHGLG00000018931) #16	YJEFN3 (ENSHGLG00000019524) #17	NDUFA13 (ENSHGLG00000018628) #18	TSSK6 (ENSHGLG00000020778) #19	GATAD2A (ENSHGLG00000003176) #20	ENSHGLG00000049094 #21	ENSHGLG00000048186 #22	ENSHGLG00000039617 #33	ENSHGLG00000042474 #22	TM6SF2 (ENSHGLG00000004113) #23	HAPLN4 (ENSHGLG00000003896) #24	NCAN (ENSHGLG00000034381) #25	NR2C2AP (ENSHGLG00000033726) #26	RFXANK (ENSHGLG00000003396) #27	MEF2BNB (ENSHGLG00000047513) #28	ENSHGLG00000003123 #29	TMEM161A (ENSHGLG00000009517) #30	SLC25A42 (ENSHGLG00000008826) #31	ARMC6 (ENSHGLG00000008147) #32	HOMER3 (ENSHGLG00000006851) #34	ENSHGLG00000006789 #35	COPE (ENSHGLG00000006648) #36
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000039559	ENSHGLG00000046812	ENSHGLG00000044603	ENSHGLG00000042271	ENSHGLG00000003184	ENSHGLG00000013806 #13	LPAR2 (ENSHGLG00000035704) #14	CILP2 (ENSHGLG00000018931) #16	YJEFN3 (ENSHGLG00000019524) #17	NDUFA13 (ENSHGLG00000018628) #18	TSSK6 (ENSHGLG00000020778) #19	GATAD2A (ENSHGLG00000003176) #20	ENSHGLG00000049094 #21	ENSHGLG00000048186 #22	ENSHGLG00000039617 #33	ENSHGLG00000042474 #22	TM6SF2 (ENSHGLG00000004113) #23	HAPLN4 (ENSHGLG00000003896) #24	NCAN (ENSHGLG00000034381) #25	NR2C2AP (ENSHGLG00000033726) #26	RFXANK (ENSHGLG00000003396) #27	MEF2BNB (ENSHGLG00000047513) #28	ENSHGLG00000003123 #29	TMEM161A (ENSHGLG00000009517) #30	SLC25A42 (ENSHGLG00000008826) #31	ARMC6 (ENSHGLG00000008147) #32	HOMER3 (ENSHGLG00000006851) #34	ENSHGLG00000006789 #35	COPE (ENSHGLG00000006648) #36	CERS1 (ENSHGLG00000013716) #37	GDF1 (ENSHGLG00000042377)
Rodentia_B	ANCESTRAL SPECIES	37						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Kangaroo rat	MODERN SPECIES	427	Med26 (ENSDORG00000012119)	Cherp (ENSDORG00000027623)	Calr3 (ENSDORG00000013084)	Eps15l1 (ENSDORG00000012303)	Fam32a (ENSDORG00000027872)	Cib3 (ENSDORG00000002313)	Rab8a (ENSDORG00000028823)	ENSDORG00000027508	ENSDORG00000012240	Atp13a1 (ENSDORG00000005185) #12	Gmip (ENSDORG00000005179) #13	Lpar2 (ENSDORG00000023437) #14	Tssk6 (ENSDORG00000008538) #19	Gatad2a (ENSDORG00000008536) #20	Mau2 (ENSDORG00000004918) #21	ENSDORG00000024315 #22	Tm6sf2 (ENSDORG00000004913) #23	Hapln4 (ENSDORG00000004912) #24	Nr2c2ap (ENSDORG00000001440) #26	Rfxank (ENSDORG00000001449) #27	Borcs8 (ENSDORG00000027906) #28	ENSDORG00000011003 #29	ENSDORG00000010999 #30	Slc25a42 (ENSDORG00000010998) #31	ENSDORG00000004418 #32	Sugp2 (ENSDORG00000011519) #33	ENSDORG00000004302 #34	Ddx49 (ENSDORG00000004301) #35	Cope (ENSDORG00000004298) #36	ENSDORG00000023557 #37	Upf1 (ENSDORG00000009984)
Myomorpha	ANCESTRAL SPECIES	43						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Lesser Egyptian jerboa	MODERN SPECIES	127	Abhd8 (ENSJJAG00000010342)	Mrpl34 (ENSJJAG00000018808)	Dda1 (ENSJJAG00000021059)	Ano8 (ENSJJAG00000011527)	Plvap (ENSJJAG00000000206)	Ccdc194 (ENSJJAG00000013119)	Mvb12a (ENSJJAG00000019047)	Atp13a1 (ENSJJAG00000010806) #12	Gmip (ENSJJAG00000013017) #13	Lpar2 (ENSJJAG00000022302) #14	Pbx4 (ENSJJAG00000010902) #15	Ndufa13 (ENSJJAG00000021903) #18	Tssk6 (ENSJJAG00000006030) #19	Gatad2a (ENSJJAG00000014763) #20	Mau2 (ENSJJAG00000021815) #21	Sugp1 (ENSJJAG00000013477) #22	Tm6sf2 (ENSJJAG00000023997) #23	Hapln4 (ENSJJAG00000016332) #24	Ncan (ENSJJAG00000018295) #25	Nr2c2ap (ENSJJAG00000023882) #26	Mef2b (ENSJJAG00000009955) #29	Slc25a42 (ENSJJAG00000018672) #31	Armc6 (ENSJJAG00000014237) #32	Sugp2 (ENSJJAG00000005264) #33	Homer3 (ENSJJAG00000014551) #34	Cope (ENSJJAG00000017037) #36	ENSJJAG00000016264 #37	ENSJJAG00000000262	Upf1 (ENSJJAG00000023151)	Comp (ENSJJAG00000011685)	Crtc1 (ENSJJAG00000014073)
Muroidea	ANCESTRAL SPECIES	47			ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870		Zfp868 (ENSNGAG00000021523)	Zfp869 (ENSNGAG00000024282)	ENSNGAG00000022982	Zfp866 (ENSNGAG00000012916)	Atp13a1 (ENSNGAG00000021636) #12	Gmip (ENSNGAG00000012947) #13	Lpar2 (ENSNGAG00000022925) #14	Pbx4 (ENSNGAG00000013031) #15	Cilp2 (ENSNGAG00000011748) #16	Yjefn3 (ENSNGAG00000021673) #17	Ndufa13 (ENSNGAG00000023080) #18	Tssk6 (ENSNGAG00000001299) #19	Gatad2a (ENSNGAG00000004469) #20	Mau2 (ENSNGAG00000015571) #21	Sugp1 (ENSNGAG00000018965) #22	Tm6sf2 (ENSNGAG00000020192) #23	Hapln4 (ENSNGAG00000014554) #24	Ncan (ENSNGAG00000022597) #25	Nr2c2ap (ENSNGAG00000010770) #26	Rfxank (ENSNGAG00000012986) #27	Borcs8 (ENSNGAG00000023653) #28	Mef2b (ENSNGAG00000010342) #29	Tmem161a (ENSNGAG00000023788) #30	Slc25a42 (ENSNGAG00000023980) #31	Armc6 (ENSNGAG00000021205) #32	Sugp2 (ENSNGAG00000005936) #33	Homer3 (ENSNGAG00000015803) #34	Ddx49 (ENSNGAG00000019673) #35	Cope (ENSNGAG00000022394) #36	ENSNGAG00000022292 #37
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Northern American deer mouse	MODERN SPECIES	8	Zfp868 (ENSPEMG00000006111)	Zfp964 (ENSPEMG00000010305)	Zfp869 (ENSPEMG00000000596)	Zfp963 (ENSPEMG00000011994)	Zfp866 (ENSPEMG00000012624)	Atp13a1 (ENSPEMG00000018771) #12	Gmip (ENSPEMG00000006786) #13	Lpar2 (ENSPEMG00000012110) #14	Pbx4 (ENSPEMG00000010841) #15	Cilp2 (ENSPEMG00000008010) #16	Yjefn3 (ENSPEMG00000011764) #17	Ndufa13 (ENSPEMG00000007743) #18	Tssk6 (ENSPEMG00000007183) #19	Gatad2a (ENSPEMG00000012515) #20	Mau2 (ENSPEMG00000016559) #21	Sugp1 (ENSPEMG00000009253) #22	Tm6sf2 (ENSPEMG00000016397) #23	Hapln4 (ENSPEMG00000029211) #24	Ncan (ENSPEMG00000012564) #25	Nr2c2ap (ENSPEMG00000001962) #26	Rfxank (ENSPEMG00000007761) #27	Borcs8 (ENSPEMG00000010340) #28	Mef2b (ENSPEMG00000018054) #29	Tmem161a (ENSPEMG00000016451) #30	Slc25a42 (ENSPEMG00000011354) #31	Armc6 (ENSPEMG00000012468) #32	Sugp2 (ENSPEMG00000009700) #33	Homer3 (ENSPEMG00000016382) #34	Ddx49 (ENSPEMG00000009238) #35	Cope (ENSPEMG00000018557) #36	ENSPEMG00000012430 #37
Prairie vole	MODERN SPECIES	164	Zfp868 (ENSMOCG00000002776)	Zfp964 (ENSMOCG00000003187)	Zfp869 (ENSMOCG00000001013)	Zfp963 (ENSMOCG00000016227)	Zfp866 (ENSMOCG00000007573)	Atp13a1 (ENSMOCG00000001496) #12	ENSMOCG00000019025	Lpar2 (ENSMOCG00000014804) #14	Pbx4 (ENSMOCG00000001326) #15	Cilp2 (ENSMOCG00000018051) #16	Yjefn3 (ENSMOCG00000019664) #17	Ndufa13 (ENSMOCG00000015070) #18	Tssk6 (ENSMOCG00000007466) #19	Gatad2a (ENSMOCG00000001060) #20	Mau2 (ENSMOCG00000003213) #21	Sugp1 (ENSMOCG00000014670) #22	Tm6sf2 (ENSMOCG00000018885) #23	Hapln4 (ENSMOCG00000000353) #24	Ncan (ENSMOCG00000020207) #25	Nr2c2ap (ENSMOCG00000003423) #26	Rfxank (ENSMOCG00000021751) #27	ENSMOCG00000008996 #28	Mef2b (ENSMOCG00000000308) #29	Tmem161a (ENSMOCG00000018852) #30	Slc25a42 (ENSMOCG00000012570) #31	Armc6 (ENSMOCG00000014288) #32	Sugp2 (ENSMOCG00000009704) #33	Homer3 (ENSMOCG00000013590) #34	Ddx49 (ENSMOCG00000018690) #35	Cope (ENSMOCG00000014940) #36	ENSMOCG00000004861 #37
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Chinese hamster chok1gshd	MODERN SPECIES	184	Zfp868 (ENSCGRG00001024449)	Zfp964 (ENSCGRG00001016061)	Zfp869 (ENSCGRG00001022854)	Zfp963 (ENSCGRG00001021819)	Zfp866 (ENSCGRG00001019443)	Atp13a1 (ENSCGRG00001012808) #12	Gmip (ENSCGRG00001000197) #13	Lpar2 (ENSCGRG00001015085) #14	Pbx4 (ENSCGRG00001014693) #15	Cilp2 (ENSCGRG00001007338) #16	Yjefn3 (ENSCGRG00001023789) #17	Ndufa13 (ENSCGRG00001022785) #18	Tssk6 (ENSCGRG00001010147) #19	Gatad2a (ENSCGRG00001018413) #20	Mau2 (ENSCGRG00001009180) #21	Sugp1 (ENSCGRG00001021250) #22	Tm6sf2 (ENSCGRG00001019424) #23	Hapln4 (ENSCGRG00001018509) #24	Ncan (ENSCGRG00001015055) #25	Nr2c2ap (ENSCGRG00001011302) #26	Rfxank (ENSCGRG00001000782) #27	Borcs8 (ENSCGRG00001020163) #28	Mef2b (ENSCGRG00001014460) #29	Tmem161a (ENSCGRG00001022808) #30	Slc25a42 (ENSCGRG00001022045) #31	Armc6 (ENSCGRG00001019296) #32	Sugp2 (ENSCGRG00001018264) #33	Homer3 (ENSCGRG00001014952) #34	Ddx49 (ENSCGRG00001009467) #35	COPE (ENSCGRG00001024248) #36	ENSCGRG00001019774 #37
Golden Hamster	MODERN SPECIES	831	ENSMAUG00000000837	Zfp868 (ENSMAUG00000007713)	Zfp964 (ENSMAUG00000017867)	Zfp963 (ENSMAUG00000012846)	Zfp866 (ENSMAUG00000013777)	Atp13a1 (ENSMAUG00000022087) #12	Gmip (ENSMAUG00000020071) #13	Lpar2 (ENSMAUG00000020957) #14	Pbx4 (ENSMAUG00000000855) #15	Cilp2 (ENSMAUG00000005034) #16	Yjefn3 (ENSMAUG00000021666) #17	Ndufa13 (ENSMAUG00000019158) #18	Tssk6 (ENSMAUG00000008397) #19	Gatad2a (ENSMAUG00000021128) #20	Mau2 (ENSMAUG00000021335) #21	Sugp1 (ENSMAUG00000016683) #22	Tm6sf2 (ENSMAUG00000001556) #23	Hapln4 (ENSMAUG00000011983) #24	Ncan (ENSMAUG00000007276) #25	Nr2c2ap (ENSMAUG00000003921) #26	Rfxank (ENSMAUG00000002477) #27	Borcs8 (ENSMAUG00000014785) #28	Mef2b (ENSMAUG00000006774) #29	Tmem161a (ENSMAUG00000011694) #30	Slc25a42 (ENSMAUG00000018082) #31	Armc6 (ENSMAUG00000011324) #32	Sugp2 (ENSMAUG00000011371) #33	Homer3 (ENSMAUG00000014150) #34	Ddx49 (ENSMAUG00000010235) #35	Cope (ENSMAUG00000016322) #36	ENSMAUG00000011350 #37
Murinae	ANCESTRAL SPECIES	23	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Rat	MODERN SPECIES	7	LOC102551257 (ENSRNOG00000067812)	Zfp964 (ENSRNOG00000042504)	Zfp869 (ENSRNOG00000033351)	Zfp866 (ENSRNOG00000042580)	LOC108348302 (ENSRNOG00000011492)	Atp13a1 (ENSRNOG00000010776) #12	Gmip (ENSRNOG00000027257) #13	Lpar2 (ENSRNOG00000010758) #14	Pbx4 (ENSRNOG00000010736) #15	Cilp2 (ENSRNOG00000020622) #16	Yjefn3 (ENSRNOG00000039191) #17	Ndufa13 (ENSRNOG00000020602) #18	Tssk6 (ENSRNOG00000020599) #19	Gatad2a (ENSRNOG00000022173) #20	Mau2 (ENSRNOG00000020526) #21	Sugp1 (ENSRNOG00000052111) #22	Tm6sf2 (ENSRNOG00000042237) #23	Hapln4 (ENSRNOG00000049949) #24	Ncan (ENSRNOG00000048036) #25	Nr2c2ap (ENSRNOG00000022247) #26	Rfxank (ENSRNOG00000033318) #27	Borcs8 (ENSRNOG00000020427) #28	Mef2b (ENSRNOG00000020400) #29	Tmem161a (ENSRNOG00000020390) #30	Slc25a42 (ENSRNOG00000020345) #31	Armc6 (ENSRNOG00000020280) #32	Sugp2 (ENSRNOG00000020269) #33	Homer3 (ENSRNOG00000020229) #34	Ddx49 (ENSRNOG00000022368) #35	Cope (ENSRNOG00000020178) #36	Cers1 (ENSRNOG00000067124) #37
Mus	ANCESTRAL SPECIES	6	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Shrew mouse	MODERN SPECIES	10	Zfp964 (MGP_PahariEiJ_G0021576)	Zfp869 (MGP_PahariEiJ_G0021577)	Zfp963 (MGP_PahariEiJ_G0021578)	MGP_PahariEiJ_G0021579	Zfp866 (MGP_PahariEiJ_G0021580)	Atp13a1 (MGP_PahariEiJ_G0021581) #12	Gmip (MGP_PahariEiJ_G0021582) #13	Lpar2 (MGP_PahariEiJ_G0021583) #14	Pbx4 (MGP_PahariEiJ_G0021584) #15	Cilp2 (MGP_PahariEiJ_G0021585) #16	Yjefn3 (MGP_PahariEiJ_G0021586) #17	Ndufa13 (MGP_PahariEiJ_G0021587) #18	Tssk6 (MGP_PahariEiJ_G0021588) #19	Gatad2a (MGP_PahariEiJ_G0021589) #20	Mau2 (MGP_PahariEiJ_G0021590) #21	Sugp1 (MGP_PahariEiJ_G0021591) #22	Tm6sf2 (MGP_PahariEiJ_G0021592) #23	Hapln4 (MGP_PahariEiJ_G0021593) #24	Ncan (MGP_PahariEiJ_G0021594) #25	Rfxank (MGP_PahariEiJ_G0021595) #27	Nr2c2ap (MGP_PahariEiJ_G0021596) #26	MGP_PahariEiJ_G0021597 #29	MGP_PahariEiJ_G0021598 #29	Tmem161a (MGP_PahariEiJ_G0021599) #30	Slc25a42 (MGP_PahariEiJ_G0021600) #31	Armc6 (MGP_PahariEiJ_G0021601) #32	Sugp2 (MGP_PahariEiJ_G0021602) #33	Homer3 (MGP_PahariEiJ_G0021603) #34	Ddx49 (MGP_PahariEiJ_G0021604) #35	Cope (MGP_PahariEiJ_G0021605) #36	MGP_PahariEiJ_G0021606
Mus_A	ANCESTRAL SPECIES	8	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Ryukyu mouse	MODERN SPECIES	17	Zfp964 (MGP_CAROLIEiJ_G0031111)	Zfp869 (MGP_CAROLIEiJ_G0031112)	Zfp963 (MGP_CAROLIEiJ_G0031113)	MGP_CAROLIEiJ_G0031114	Zfp866 (MGP_CAROLIEiJ_G0031115)	Atp13a1 (MGP_CAROLIEiJ_G0031116) #12	Gmip (MGP_CAROLIEiJ_G0031117) #13	Lpar2 (MGP_CAROLIEiJ_G0031118) #14	Pbx4 (MGP_CAROLIEiJ_G0031119) #15	Cilp2 (MGP_CAROLIEiJ_G0031120) #16	Yjefn3 (MGP_CAROLIEiJ_G0031121) #17	Ndufa13 (MGP_CAROLIEiJ_G0031122) #18	Tssk6 (MGP_CAROLIEiJ_G0031123) #19	Gatad2a (MGP_CAROLIEiJ_G0031124) #20	Mau2 (MGP_CAROLIEiJ_G0031125) #21	Sugp1 (MGP_CAROLIEiJ_G0031126) #22	Tm6sf2 (MGP_CAROLIEiJ_G0031127) #23	Hapln4 (MGP_CAROLIEiJ_G0031128) #24	Ncan (MGP_CAROLIEiJ_G0031129) #25	Rfxank (MGP_CAROLIEiJ_G0031130) #27	Nr2c2ap (MGP_CAROLIEiJ_G0031131) #26	MGP_CAROLIEiJ_G0031132 #29	MGP_CAROLIEiJ_G0031133 #29	Tmem161a (MGP_CAROLIEiJ_G0031134) #30	Slc25a42 (MGP_CAROLIEiJ_G0031135) #31	Armc6 (MGP_CAROLIEiJ_G0031136) #32	Sugp2 (MGP_CAROLIEiJ_G0031137) #33	Homer3 (MGP_CAROLIEiJ_G0031138) #34	Ddx49 (MGP_CAROLIEiJ_G0031139) #35	Cope (MGP_CAROLIEiJ_G0031140) #36	MGP_CAROLIEiJ_G0031141
Mus_B	ANCESTRAL SPECIES	6	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Mouse	MODERN SPECIES	17	Zfp964 (ENSMUSG00000091764)	Zfp869 (ENSMUSG00000054648)	Zfp963 (ENSMUSG00000092260)	Gm20422 (ENSMUSG00000092544)	Zfp866 (ENSMUSG00000043090)	Atp13a1 (ENSMUSG00000031862) #12	Gmip (ENSMUSG00000036246) #13	Lpar2 (ENSMUSG00000031861) #14	Pbx4 (ENSMUSG00000031860) #15	Cilp2 (ENSMUSG00000044006) #16	Yjefn3 (ENSMUSG00000048967) #17	Ndufa13 (ENSMUSG00000036199) #18	Tssk6 (ENSMUSG00000047654) #19	Gatad2a (ENSMUSG00000036180) #20	Mau2 (ENSMUSG00000031858) #21	Sugp1 (ENSMUSG00000011306) #22	Tm6sf2 (ENSMUSG00000036151) #23	Hapln4 (ENSMUSG00000007594) #24	Ncan (ENSMUSG00000002341) #25	Rfxank (ENSMUSG00000036120) #27	Nr2c2ap (ENSMUSG00000071078) #26	Borcs8 (ENSMUSG00000002345) #28	Mef2b (ENSMUSG00000079033) #29	Tmem161a (ENSMUSG00000002342) #30	Slc25a42 (ENSMUSG00000002346) #31	Armc6 (ENSMUSG00000002343) #32	Sugp2 (ENSMUSG00000036054) #33	Homer3 (ENSMUSG00000003573) #34	Ddx49 (ENSMUSG00000057788) #35	Cope (ENSMUSG00000055681) #36	Cers1 (ENSMUSG00000087408)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00950000182755.b.a.a.b.a.a.k.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.b.b	ENSGT00950000182755.b.a.a.b.a.a.k.b.a	ENSGT00940000164244.b	ENSGT00950000182755.b.a.a.b.a.a.k.a.a	ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
spretus	MODERN SPECIES	17	Zfp964 (MGP_SPRETEiJ_G0032229)	Zfp869 (MGP_SPRETEiJ_G0032230)	Zfp963 (MGP_SPRETEiJ_G0032231)	MGP_SPRETEiJ_G0032232	Zfp866 (MGP_SPRETEiJ_G0032233)	Atp13a1 (MGP_SPRETEiJ_G0032234) #12	Gmip (MGP_SPRETEiJ_G0032235) #13	Lpar2 (MGP_SPRETEiJ_G0032236) #14	Pbx4 (MGP_SPRETEiJ_G0032237) #15	Cilp2 (MGP_SPRETEiJ_G0032238) #16	Yjefn3 (MGP_SPRETEiJ_G0032239) #17	Ndufa13 (MGP_SPRETEiJ_G0032240) #18	Tssk6 (MGP_SPRETEiJ_G0032241) #19	Gatad2a (MGP_SPRETEiJ_G0032242) #20	Mau2 (MGP_SPRETEiJ_G0032243) #21	Sugp1 (MGP_SPRETEiJ_G0032244) #22	Tm6sf2 (MGP_SPRETEiJ_G0032245) #23	Hapln4 (MGP_SPRETEiJ_G0032246) #24	Ncan (MGP_SPRETEiJ_G0032247) #25	Rfxank (MGP_SPRETEiJ_G0032248) #27	Nr2c2ap (MGP_SPRETEiJ_G0032249) #26	MGP_SPRETEiJ_G0032250 #29	MGP_SPRETEiJ_G0032251 #29	Tmem161a (MGP_SPRETEiJ_G0032252) #30	Slc25a42 (MGP_SPRETEiJ_G0032253) #31	Armc6 (MGP_SPRETEiJ_G0032254) #32	Sugp2 (MGP_SPRETEiJ_G0032255) #33	Homer3 (MGP_SPRETEiJ_G0032256) #34	Ddx49 (MGP_SPRETEiJ_G0032257) #35	Cope (MGP_SPRETEiJ_G0032258) #36	MGP_SPRETEiJ_G0032259
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2734									Pbx4 (ENSMSIG00000032030) #15	Cilp2 (ENSMSIG00000032031) #16	Yjefn3 (ENSMSIG00000032032) #17	Ndufa13 (ENSMSIG00000032033) #18	Tssk6 (ENSMSIG00000032034) #19	Gatad2a (ENSMSIG00000032035) #20	Mau2 (ENSMSIG00000032036) #21	Sugp1 (ENSMSIG00000032037) #22	Tm6sf2 (ENSMSIG00000032038) #23	Hapln4 (ENSMSIG00000032039) #24	Ncan (ENSMSIG00000032040) #25	Nr2c2ap (ENSMSIG00000032043) #26	Rfxank (ENSMSIG00000032044) #27	Borcs8 (ENSMSIG00000032045) #28	ENSMSIG00000032046 #29	Tmem161a (ENSMSIG00000032047) #30	Slc25a42 (ENSMSIG00000032048) #31	Armc6 (ENSMSIG00000032049) #32	Sugp2 (ENSMSIG00000032050) #33	Homer3 (ENSMSIG00000032051) #34	Ddx49 (ENSMSIG00000032052) #35	Cope (ENSMSIG00000032053) #36	ENSMSIG00000032054 #37
Steppe mouse	MODERN SPECIES	1033																ENSMSIG00000001784 #22
Lagomorpha	ANCESTRAL SPECIES	270												ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26
Pika	MODERN SPECIES	3990															ENSOPRG00000018947 #21	SUGP1 (ENSOPRG00000004247) #22	ENSOPRG00000018692 #23	HAPLN4 (ENSOPRG00000004236) #24	NCAN (ENSOPRG00000004179) #25	NR2C2AP (ENSOPRG00000004162) #26
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	831															ENSOCUG00000011101	ENSOCUG00000024929 #22	ENSOCUG00000024634 #22	ENSOCUG00000036988	ENSOCUG00000037609
Rabbit	MODERN SPECIES	831														ENSOCUG00000011101	ENSOCUG00000024929 #22	ENSOCUG00000024634 #22	ENSOCUG00000036988	ENSOCUG00000037609
Rabbit	MODERN SPECIES	858												TSSK6 (ENSOCUG00000026975) #19	ENSOCUG00000039262	GATAD2A (ENSOCUG00000017513) #20	MAU2 (ENSOCUG00000002263) #21	ENSOCUG00000038816 #22
Atlantogenata	ANCESTRAL SPECIES	42						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926
Afrotheria	ANCESTRAL SPECIES	45						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926
Afrotheria_a	ANCESTRAL SPECIES	44						ENSGT00550000075064 #12	ENSGT00950000183110.a #13	ENSGT01050000244941.B.c #14	ENSGT00940000162643 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926
Elephant	MODERN SPECIES	270	ENSLAFG00000028505	ENSLAFG00000003168	KLHL17 (ENSLAFG00000003167)	ENSLAFG00000025891	ENSLAFG00000031243	ENSLAFG00000030867	ATP13A1 (ENSLAFG00000008396) #12	GMIP (ENSLAFG00000008389) #13	LPAR2 (ENSLAFG00000008384) #14	CILP2 (ENSLAFG00000025674) #16	YJEFN3 (ENSLAFG00000009481) #17	NDUFA13 (ENSLAFG00000022064) #18	TSSK6 (ENSLAFG00000027015) #19	GATAD2A (ENSLAFG00000009470) #20	MAU2 (ENSLAFG00000021412) #21	SUGP1 (ENSLAFG00000017363) #22	TM6SF2 (ENSLAFG00000021853) #23	HAPLN4 (ENSLAFG00000031107) #24	NCAN (ENSLAFG00000015356) #25	NR2C2AP (ENSLAFG00000017559) #26	RFXANK (ENSLAFG00000017554) #27	BORCS8 (ENSLAFG00000031264) #28	ENSLAFG00000026493	MEF2B (ENSLAFG00000029184) #29	TMEM161A (ENSLAFG00000012976) #30	SLC25A42 (ENSLAFG00000003608) #31	ARMC6 (ENSLAFG00000021876) #32	SUGP2 (ENSLAFG00000018646) #33	CRLF1 (ENSLAFG00000008358)	HOMER3 (ENSLAFG00000002936) #34	DDX49 (ENSLAFG00000002934) #35
Hyrax	MODERN SPECIES	6558															MAU2 (ENSPCAG00000014835) #21	SUGP1 (ENSPCAG00000014760) #22	TM6SF2 (ENSPCAG00000014712) #23	HAPLN4 (ENSPCAG00000014625) #24
Xenarthra	ANCESTRAL SPECIES																	ENSGT00410000025695.a #22
Armadillo	MODERN SPECIES	4186																ENSDNOG00000045088 #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162014.f	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.a.b	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01000000216439	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162014.f.b.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.e.a.a	ENSGT00940000162014.e.a.b	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01000000216439	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162014.f.b.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.e.a.a	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01000000216439	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162014.f.b.a	ENSGT00940000162014.e.b.a.a	ENSGT00940000162014.e.a.a	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753.a #27	ENSGT00390000014856 #28	ENSGT00940000154929.B	ENSGT00950000182916.a.a	ENSGT01000000216439	ENSGT00500000044957	ENSGT00950000183104.B.a.a	ENSGT00390000004282	ENSGT00390000005318.a	ENSGT00940000161213	ENSGT00390000003420.b
Common wonbat	MODERN SPECIES	580	ILVBL (ENSVURG00010024855)	SYDE1 (ENSVURG00010024852)	OR1I1 (ENSVURG00010024850)	CASP14 (ENSVURG00010024849)	ENSVURG00010024848	SLC1A6 (ENSVURG00010024846)	ENSVURG00010024843	ENSVURG00010024842	ENSVURG00010024841	ENSVURG00010024840	CILP2 (ENSVURG00010024838) #16	YJEFN3 (ENSVURG00010024837) #17	NDUFA13 (ENSVURG00010024836) #18	TSSK6 (ENSVURG00010024835) #19	GATAD2A (ENSVURG00010024834) #20	SUGP1 (ENSVURG00010024831) #22	TM6SF2 (ENSVURG00010024830) #23	HAPLN4 (ENSVURG00010024829) #24	ENSVURG00010024827 #25	ENSVURG00010024825 #26	RFXANK (ENSVURG00010024824) #27	BORCS8 (ENSVURG00010024823) #28	ENSVURG00010024799	ENSVURG00010024784	DOHH (ENSVURG00010024782)	FZR1 (ENSVURG00010024780)	TEKTIP1 (ENSVURG00010024778)	MFSD12 (ENSVURG00010024773)	HMG20B (ENSVURG00010024769)	GIPC3 (ENSVURG00010024764)	TBXA2R (ENSVURG00010024759)
koala	MODERN SPECIES	190	SYDE1 (ENSPCIG00000003261)	OR1I1 (ENSPCIG00000003241)	CASP14 (ENSPCIG00000003224)	ENSPCIG00000003213	CCDC105 (ENSPCIG00000003198)	SLC1A6 (ENSPCIG00000003178)	ENSPCIG00000011974	ENSPCIG00000031404	ENSPCIG00000032437	ENSPCIG00000027489	CILP2 (ENSPCIG00000024194) #16	YJEFN3 (ENSPCIG00000024192) #17	NDUFA13 (ENSPCIG00000024191) #18	GATAD2A (ENSPCIG00000024189) #20	MAU2 (ENSPCIG00000024186) #21	SUGP1 (ENSPCIG00000031015) #22	TM6SF2 (ENSPCIG00000024217) #23	HAPLN4 (ENSPCIG00000024218) #24	NCAN (ENSPCIG00000024219) #25	NR2C2AP (ENSPCIG00000024227) #26	ENSPCIG00000024222 #27	BORCS8 (ENSPCIG00000024230) #28	ENSPCIG00000024267	ENSPCIG00000025322	ENSPCIG00000033895	DOHH (ENSPCIG00000025326)	FZR1 (ENSPCIG00000025330)	ENSPCIG00000033355	MFSD12 (ENSPCIG00000025337)	HMG20B (ENSPCIG00000025343)	GIPC3 (ENSPCIG00000025355)
Wallaby	MODERN SPECIES	30															MAU2 (ENSMEUG00000013331) #21	SUGP1 (ENSMEUG00000013320) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000027731	ENSSHAG00000026661	ENSSHAG00000029122	ENSSHAG00000021148	ENSSHAG00000026593	ENSSHAG00000025267	ENSSHAG00000020667	ENSSHAG00000024947	ENSSHAG00000004029	ENSSHAG00000022278 #16	ENSSHAG00000003518 #17	TSSK6 (ENSSHAG00000001334) #19	NDUFA13 (ENSSHAG00000031151) #18	GATAD2A (ENSSHAG00000013178) #20	MAU2 (ENSSHAG00000012602) #21	SUGP1 (ENSSHAG00000012361) #22	TM6SF2 (ENSSHAG00000012199) #23	HAPLN4 (ENSSHAG00000012102) #24	ENSSHAG00000011784 #25	ENSSHAG00000026063 #27	ENSSHAG00000031648 #28	ENSSHAG00000010759	ENSSHAG00000008822	DOHH (ENSSHAG00000008794)	FZR1 (ENSSHAG00000007954)	MFSD12 (ENSSHAG00000007626)	HMG20B (ENSSHAG00000007226)	TBXA2R (ENSSHAG00000006677)	ENSSHAG00000006050	PIP5K1C (ENSSHAG00000004499)	ENSSHAG00000027582
Opossum	MODERN SPECIES	2	ENSMODG00000046972	ENSMODG00000007347	ENSMODG00000023782	ENSMODG00000040491	ENSMODG00000046547	ENSMODG00000007250	ENSMODG00000023786	ENSMODG00000050615	ENSMODG00000007234	CILP2 (ENSMODG00000007229) #16	YJEFN3 (ENSMODG00000007212) #17	NDUFA13 (ENSMODG00000007201) #18	TSSK6 (ENSMODG00000023787) #19	GATAD2A (ENSMODG00000007189) #20	MAU2 (ENSMODG00000007162) #21	SUGP1 (ENSMODG00000007089) #22	TM6SF2 (ENSMODG00000007077) #23	HAPLN4 (ENSMODG00000007055) #24	ENSMODG00000028358 #25	NR2C2AP (ENSMODG00000047700) #26	RFXANK (ENSMODG00000007002) #27	BORCS8 (ENSMODG00000006986) #28	ENSMODG00000006976	NFIC (ENSMODG00000006935)	DOHH (ENSMODG00000006927)	FZR1 (ENSMODG00000006919)	ENSMODG00000047578	MFSD12 (ENSMODG00000006897)	HMG20B (ENSMODG00000006884)	ENSMODG00000006869	TBXA2R (ENSMODG00000006844)
Platypus	MODERN SPECIES	84	BABAM1 (ENSOANG00000041344)	ENSOANG00000039006	ABHD8 (ENSOANG00000014712)	ENSOANG00000050876	ENSOANG00000040368	ENSOANG00000037822	ANO8 (ENSOANG00000013731)	GTPBP3 (ENSOANG00000013734)	ENSOANG00000007382	CILP2 (ENSOANG00000046610) #16	YJEFN3 (ENSOANG00000051046) #17	ENSOANG00000045026 #18	ENSOANG00000011547 #19	GATAD2A (ENSOANG00000006409) #20	ENSOANG00000012450 #21	SUGP1 (ENSOANG00000030496) #22	TM6SF2 (ENSOANG00000012176) #23	HAPLN4 (ENSOANG00000029891) #24	ENSOANG00000032130 #25	NR2C2AP (ENSOANG00000040380) #26	ENSOANG00000003658 #27	BORCS8 (ENSOANG00000043258) #28	ENSOANG00000046511	MEF2B (ENSOANG00000010126) #29	TMEM161A (ENSOANG00000011575) #30	SLC25A42 (ENSOANG00000001030) #31	ARMC6 (ENSOANG00000045954) #32	SUGP2 (ENSOANG00000004574) #33	ENSOANG00000043871	ENSOANG00000004573	ENSOANG00000044420 #35
Sauria	ANCESTRAL SPECIES	20	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Lepidosauria	ANCESTRAL SPECIES	35	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.m.b #34	ENSGT00940000167763	ENSGT00940000158081.m.a #34
Episquamata	ANCESTRAL SPECIES	18	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00440000039287.a.a	ENSGT00670000098179	ENSGT00950000185241.b	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35
Laterata	ANCESTRAL SPECIES	37	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00960000192150	ENSGT00670000098179	ENSGT00950000185241.b	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35
Common wall lizard	MODERN SPECIES	9	ENSPMRG00000020648	ENSPMRG00000020652	ENSPMRG00000020659	ACTL9 (ENSPMRG00000020665)	ENSPMRG00000020672	FKBP8 (ENSPMRG00000020683)	ENSPMRG00000020692	ENSPMRG00000020696	KXD1 (ENSPMRG00000020710)	WDR18 (ENSPMRG00000020734)	GRIN3B (ENSPMRG00000020765)	TMEM259 (ENSPMRG00000020879)	NDUFA13 (ENSPMRG00000020953) #18	GATAD2A (ENSPMRG00000020959) #20	MAU2 (ENSPMRG00000021003) #21	SUGP1 (ENSPMRG00000021319) #22	TM6SF2 (ENSPMRG00000021377) #23	HAPLN4 (ENSPMRG00000021383) #24	NCAN (ENSPMRG00000021434) #25	NR2C2AP (ENSPMRG00000021664) #26	RFXANK (ENSPMRG00000021677) #27	ENSPMRG00000021683	ENSPMRG00000021689	MEF2B (ENSPMRG00000021693) #29	TMEM161A (ENSPMRG00000021702) #30	SLC25A42 (ENSPMRG00000021711) #31	ENSPMRG00000021717 #32	ENSPMRG00000021724	ENSPMRG00000021726	ENSPMRG00000021729 #32	ENSPMRG00000021733 #32
Argentine black and white tegu	MODERN SPECIES	106	ENSSMRG00000002608	ADAMTS10 (ENSSMRG00000000856)	ZAP70 (ENSSMRG00000000789)	ACTL9 (ENSSMRG00000000784)	ENSSMRG00000000723	ENSSMRG00000000700	ENSSMRG00000000683	FKBP8 (ENSSMRG00000000670)	KXD1 (ENSSMRG00000000652)	WDR18 (ENSSMRG00000000620)	GRIN3B (ENSSMRG00000000601)	TMEM259 (ENSSMRG00000000592)	NDUFA13 (ENSSMRG00000000580) #18	GATAD2A (ENSSMRG00000000536) #20	MAU2 (ENSSMRG00000000406) #21	SUGP1 (ENSSMRG00000000352) #22	TM6SF2 (ENSSMRG00000000324) #23	HAPLN4 (ENSSMRG00000000158) #24	NCAN (ENSSMRG00000000110) #25	NR2C2AP (ENSSMRG00000000094) #26	RFXANK (ENSSMRG00000000051) #27	BORCS8 (ENSSMRG00000000033) #28	ENSSMRG00000022975	MEF2B (ENSSMRG00000022974) #29	TMEM161A (ENSSMRG00000022973) #30	SLC25A42 (ENSSMRG00000022972) #31	ARMC6 (ENSSMRG00000022971) #32	SUGP2 (ENSSMRG00000022970) #33	ENSSMRG00000022969	HOMER3 (ENSSMRG00000022968) #34	DDX49 (ENSSMRG00000022967) #35
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000163012	ENSGT00440000039287.a.a	ENSGT00670000098179	ENSGT00950000185241.b	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35
Lizard	MODERN SPECIES	423																ENSACAG00000008769 #22
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000163012.a	ENSGT00940000163012.b	ENSGT00440000039287.a.a	ENSGT00670000098179	ENSGT00950000185241.b	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231.i.a #35
Indian cobra	MODERN SPECIES		ADAMTS10 (ENSNNAG00000000892)	ZAP70 (ENSNNAG00000000997)	ENSNNAG00000001047	ENSNNAG00000001061	ENSNNAG00000001070	ENSNNAG00000001099	ENSNNAG00000001115	FKBP8 (ENSNNAG00000001152)	KXD1 (ENSNNAG00000001270)	WDR18 (ENSNNAG00000001289)	GRIN3B (ENSNNAG00000001337)	TMEM259 (ENSNNAG00000001408)	NDUFA13 (ENSNNAG00000001445) #18	GATAD2A (ENSNNAG00000001467) #20	MAU2 (ENSNNAG00000001497) #21	SUGP1 (ENSNNAG00000001518) #22	TM6SF2 (ENSNNAG00000001539) #23	ENSNNAG00000001558	HAPLN4 (ENSNNAG00000001578) #24	NCAN (ENSNNAG00000001611) #25	NR2C2AP (ENSNNAG00000001682) #26	RFXANK (ENSNNAG00000001702) #27	BORCS8 (ENSNNAG00000001727) #28	ENSNNAG00000001734 #29	TMEM161A (ENSNNAG00000001750) #30	SLC25A42 (ENSNNAG00000001764) #31	ARMC6 (ENSNNAG00000001775) #32	SUGP2 (ENSNNAG00000001797) #33	ENSNNAG00000001830	HOMER3 (ENSNNAG00000001848) #34	DDX49 (ENSNNAG00000001874) #35
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000163012.a	ENSGT00940000163012.b	ENSGT00440000039287.a.a	ENSGT00670000098179	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00950000185950	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00940000159808	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000163012.a	ENSGT00940000163012.b	ENSGT00670000098179	ENSGT00940000156705	ENSGT00530000064192	ENSGT00390000000289	ENSGT00940000161021	ENSGT00390000013329	ENSGT00390000000719.d #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231.i.a #35
Mainland tiger snake	MODERN SPECIES	191						ENSNSUG00000017286	ENSNSUG00000017285	FKBP8 (ENSNSUG00000017284)	ENSNSUG00000017283	WDR18 (ENSNSUG00000017269)	GRIN3B (ENSNSUG00000017267)	TMEM259 (ENSNSUG00000017266)	ENSNSUG00000017264 #18	GATAD2A (ENSNSUG00000017263) #20	MAU2 (ENSNSUG00000017183) #21	SUGP1 (ENSNSUG00000017182) #22	TM6SF2 (ENSNSUG00000017181) #23	HAPLN4 (ENSNSUG00000017180) #24	ENSNSUG00000017179 #25	ENSNSUG00000017178 #25	NR2C2AP (ENSNSUG00000017177) #26	RFXANK (ENSNSUG00000017158) #27	BORCS8 (ENSNSUG00000017157) #28	ENSNSUG00000017155	ENSNSUG00000017154 #29	TMEM161A (ENSNSUG00000017150) #30	SLC25A42 (ENSNSUG00000017149) #31	ARMC6 (ENSNSUG00000017148) #32	SUGP2 (ENSNSUG00000017147) #33	ENSNSUG00000017139	HOMER3 (ENSNSUG00000017134) #34
Eastern brown snake	MODERN SPECIES	10	OAZ1 (ENSPTXG00000002197)	MYO1F (ENSPTXG00000002198)	ADAMTS10 (ENSPTXG00000002208)	ZAP70 (ENSPTXG00000002233)	ENSPTXG00000002235	ENSPTXG00000002236	ENSPTXG00000002239	ENSPTXG00000002240	FKBP8 (ENSPTXG00000002241)	WDR18 (ENSPTXG00000002244)	GRIN3B (ENSPTXG00000002248)	TMEM259 (ENSPTXG00000002329)	ENSPTXG00000002332 #18	GATAD2A (ENSPTXG00000002333) #20	MAU2 (ENSPTXG00000002334) #21	SUGP1 (ENSPTXG00000002335) #22	TM6SF2 (ENSPTXG00000002337) #23	ENSPTXG00000002338 #24	ENSPTXG00000002340 #25	ENSPTXG00000002343 #25	NR2C2AP (ENSPTXG00000002344) #26	RFXANK (ENSPTXG00000002349) #27	BORCS8 (ENSPTXG00000002351) #28	ENSPTXG00000002354	MEF2B (ENSPTXG00000002356) #29	TMEM161A (ENSPTXG00000002360) #30	SLC25A42 (ENSPTXG00000002364) #31	ARMC6 (ENSPTXG00000002367) #32	SUGP2 (ENSPTXG00000002368) #33	ENSPTXG00000002371	ENSPTXG00000002373 #34
Blue-lipped sea krait	MODERN SPECIES	6554																ENSLLTG00000010653 #22
tuatara	MODERN SPECIES	1387	SLC5A5 (ENSSPUG00000007125)	CCDC124 (ENSSPUG00000007177)	KCNN1 (ENSSPUG00000007182)	ENSSPUG00000007197	NR2F6 (ENSSPUG00000007214)	BABAM1 (ENSSPUG00000007222)	ABHD8 (ENSSPUG00000007232)	MRPL34 (ENSSPUG00000007265)	DDA1 (ENSSPUG00000007270)	GTPBP3 (ENSSPUG00000007326)	ENSSPUG00000007338	YJEFN3 (ENSSPUG00000007394) #17	NDUFA13 (ENSSPUG00000007419) #18	GATAD2A (ENSSPUG00000007455) #20	MAU2 (ENSSPUG00000007521) #21	SUGP1 (ENSSPUG00000007840) #22	TM6SF2 (ENSSPUG00000007875) #23	HAPLN4 (ENSSPUG00000007909) #24	NCAN (ENSSPUG00000007934) #25	NR2C2AP (ENSSPUG00000007984) #26	RFXANK (ENSSPUG00000007991) #27	BORCS8 (ENSSPUG00000008006) #28	ENSSPUG00000008012	ENSSPUG00000008020 #29	TMEM161A (ENSSPUG00000008031) #30	SLC25A42 (ENSSPUG00000008044) #31
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719.a #18	ENSGT00960000189525	ENSGT00390000000719.b #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Abingdon island giant tortoise	MODERN SPECIES		ENSCABG00000004188	BABAM1 (ENSCABG00000004192)	ANKLE1 (ENSCABG00000004202)	ABHD8 (ENSCABG00000004206)	MRPL34 (ENSCABG00000004210)	DDA1 (ENSCABG00000004212)	ANO8 (ENSCABG00000004215)	GTPBP3 (ENSCABG00000004223)	ENSCABG00000004225	CILP2 (ENSCABG00000004232) #16	YJEFN3 (ENSCABG00000004238) #17	ENSCABG00000004241	ENSCABG00000004244 #18	GATAD2A (ENSCABG00000004245) #20	MAU2 (ENSCABG00000004254) #21	SUGP1 (ENSCABG00000004858) #22	TM6SF2 (ENSCABG00000004866) #23	HAPLN4 (ENSCABG00000004875) #24	NCAN (ENSCABG00000004882) #25	NR2C2AP (ENSCABG00000004889) #26	RFXANK (ENSCABG00000004891) #27	BORCS8 (ENSCABG00000004894) #28	ENSCABG00000004899	MEF2B (ENSCABG00000004901) #29	TMEM161A (ENSCABG00000004904) #30	SLC25A42 (ENSCABG00000004955) #31	FLRT2 (ENSCABG00000004957)
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005006831	ENSGEVG00005006786	NR2F6 (ENSGEVG00005006760)	BABAM1 (ENSGEVG00005006735)	ANKLE1 (ENSGEVG00005006566)	ABHD8 (ENSGEVG00005006483)	MRPL34 (ENSGEVG00005006469)	DDA1 (ENSGEVG00005006430)	ANO8 (ENSGEVG00005006292)	GTPBP3 (ENSGEVG00005006249)	CILP2 (ENSGEVG00005006211) #16	YJEFN3 (ENSGEVG00005006180) #17	NDUFA13 (ENSGEVG00005006122) #18	GATAD2A (ENSGEVG00005006074) #20	MAU2 (ENSGEVG00005005539) #21	SUGP1 (ENSGEVG00005005333) #22	TM6SF2 (ENSGEVG00005005276) #23	HAPLN4 (ENSGEVG00005005235) #24	NCAN (ENSGEVG00005005147) #25	NR2C2AP (ENSGEVG00005005076) #26	RFXANK (ENSGEVG00005005039) #27	BORCS8 (ENSGEVG00005005013) #28	ENSGEVG00005004987	MEF2B (ENSGEVG00005004959) #29	TMEM161A (ENSGEVG00005004899) #30	SLC25A42 (ENSGEVG00005004855) #31	ARMC6 (ENSGEVG00005004824) #32	SUGP2 (ENSGEVG00005004782) #33	ENSGEVG00005004681	HOMER3 (ENSGEVG00005004624) #34	DDX49 (ENSGEVG00005004539) #35
Emydidae	ANCESTRAL SPECIES	14	ENSGT00940000165052	ENSGT00940000160748	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Three-toed box turtle	MODERN SPECIES	92	NR2F6 (ENSTMTG00000003288)	ENSTMTG00000003274	BABAM1 (ENSTMTG00000003264)	ANKLE1 (ENSTMTG00000003176)	ABHD8 (ENSTMTG00000003154)	MRPL34 (ENSTMTG00000003147)	DDA1 (ENSTMTG00000003127)	ANO8 (ENSTMTG00000003079)	GTPBP3 (ENSTMTG00000003053)	ENSTMTG00000003038	CILP2 (ENSTMTG00000003015) #16	YJEFN3 (ENSTMTG00000013384) #17	NDUFA13 (ENSTMTG00000013371) #18	GATAD2A (ENSTMTG00000013318) #20	MAU2 (ENSTMTG00000013280) #21	SUGP1 (ENSTMTG00000013266) #22	TM6SF2 (ENSTMTG00000013253) #23	HAPLN4 (ENSTMTG00000013225) #24	NCAN (ENSTMTG00000013156) #25	NR2C2AP (ENSTMTG00000013134) #26	RFXANK (ENSTMTG00000013105) #27	BORCS8 (ENSTMTG00000013093) #28	ENSTMTG00000013028	MEF2B (ENSTMTG00000013005) #29	TMEM161A (ENSTMTG00000012984) #30	SLC25A42 (ENSTMTG00000012962) #31	ARMC6 (ENSTMTG00000012947) #32	SUGP2 (ENSTMTG00000012920) #33	ENSTMTG00000012889	HOMER3 (ENSTMTG00000012853) #34	DDX49 (ENSTMTG00000012790) #35
painted turtle	MODERN SPECIES	771	ENSCPBG00000012401	ENSCPBG00000012402	NR2F6 (ENSCPBG00000012404)	BABAM1 (ENSCPBG00000012410)	ANKLE1 (ENSCPBG00000012416)	ABHD8 (ENSCPBG00000012422)	MRPL34 (ENSCPBG00000012424)	DDA1 (ENSCPBG00000012426)	ANO8 (ENSCPBG00000012431)	GTPBP3 (ENSCPBG00000012434)	ENSCPBG00000012437	CILP2 (ENSCPBG00000012445) #16	YJEFN3 (ENSCPBG00000012447) #17	GATAD2A (ENSCPBG00000012450) #20	MAU2 (ENSCPBG00000012453) #21	SUGP1 (ENSCPBG00000012455) #22	TM6SF2 (ENSCPBG00000012458) #23	HAPLN4 (ENSCPBG00000012460) #24	NCAN (ENSCPBG00000012461) #25	NR2C2AP (ENSCPBG00000012463) #26	RFXANK (ENSCPBG00000012464) #27	BORCS8 (ENSCPBG00000012467) #28	ENSCPBG00000012469	MEF2B (ENSCPBG00000012471) #29	TMEM161A (ENSCPBG00000012479) #30	SLC25A42 (ENSCPBG00000012483) #31	ARMC6 (ENSCPBG00000012485) #32	SUGP2 (ENSCPBG00000012487) #33	ENSCPBG00000012490	HOMER3 (ENSCPBG00000012496) #34	DDX49 (ENSCPBG00000012500) #35
Chinese turtle	MODERN SPECIES	1790	CCDC124 (ENSPSIG00000013042)	KCNN1 (ENSPSIG00000013049)	ENSPSIG00000013072	NR2F6 (ENSPSIG00000013773)	BABAM1 (ENSPSIG00000014350)	ANKLE1 (ENSPSIG00000014550)	ABHD8 (ENSPSIG00000015080)	MRPL34 (ENSPSIG00000001128)	DDA1 (ENSPSIG00000015105)	GTPBP3 (ENSPSIG00000015510)	CILP2 (ENSPSIG00000015529) #16	YJEFN3 (ENSPSIG00000015540) #17	NDUFA13 (ENSPSIG00000015655) #18	GATAD2A (ENSPSIG00000015717) #20	MAU2 (ENSPSIG00000016573) #21	SUGP1 (ENSPSIG00000016889) #22	TM6SF2 (ENSPSIG00000017375) #23	HAPLN4 (ENSPSIG00000017388) #24	NCAN (ENSPSIG00000017408) #25	ENSPSIG00000017603	ENSPSIG00000001137	NR2C2AP (ENSPSIG00000017608) #26	RFXANK (ENSPSIG00000017645) #27	BORCS8 (ENSPSIG00000006585) #28	TMEM161A (ENSPSIG00000006789) #30	SLC25A42 (ENSPSIG00000007452) #31	ARMC6 (ENSPSIG00000008070) #32	SUGP2 (ENSPSIG00000008256) #33	ENSPSIG00000008490	HOMER3 (ENSPSIG00000008524) #34	DDX49 (ENSPSIG00000008625) #35
Archosauria	ANCESTRAL SPECIES	16	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Australian saltwater crocodile	MODERN SPECIES	3	PCSK4 (ENSCPRG00005015619)	REEP6 (ENSCPRG00005015622)	ENSCPRG00005015625	THOP1 (ENSCPRG00005015627)	SGTA (ENSCPRG00005015629)	SLC39A3 (ENSCPRG00005015630)	DIRAS1 (ENSCPRG00005015632)	GNG7 (ENSCPRG00005015637)	GADD45B (ENSCPRG00005015639)	ENSCPRG00005015644	CARTPT (ENSCPRG00005015645)	YJEFN3 (ENSCPRG00005015647) #17	NDUFA13 (ENSCPRG00005015651) #18	GATAD2A (ENSCPRG00005015653) #20	MAU2 (ENSCPRG00005015658) #21	SUGP1 (ENSCPRG00005015667) #22	TM6SF2 (ENSCPRG00005015672) #23	HAPLN4 (ENSCPRG00005015677) #24	NR2C2AP (ENSCPRG00005015681) #26	RFXANK (ENSCPRG00005015684) #27	BORCS8 (ENSCPRG00005015689) #28	ENSCPRG00005015692	MEF2B (ENSCPRG00005015695) #29	TMEM161A (ENSCPRG00005015699) #30	SLC25A42 (ENSCPRG00005015701) #31	ARMC6 (ENSCPRG00005015704) #32	SUGP2 (ENSCPRG00005015708) #33	ENSCPRG00005015709	HOMER3 (ENSCPRG00005015713) #34	DDX49 (ENSCPRG00005015719) #35	COPE (ENSCPRG00005015722) #36
Aves	ANCESTRAL SPECIES	20	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
African ostrich	MODERN SPECIES	1058														GATAD2A (ENSSCUG00000019070) #20	MAU2 (ENSSCUG00000019069) #21	SUGP1 (ENSSCUG00000019068) #22	TM6SF2 (ENSSCUG00000019067) #23	NR2C2AP (ENSSCUG00000019065) #26	RFXANK (ENSSCUG00000019064) #27	BORCS8 (ENSSCUG00000019063) #28	ENSSCUG00000019062
Neognathae	ANCESTRAL SPECIES	21	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Chicken	MODERN SPECIES	20	NR2F6 (ENSGALG00010028581)	USHBP1 (ENSGALG00010028583)	BABAM1 (ENSGALG00010028586)	ANKLE1 (ENSGALG00010028587)	ABHD8 (ENSGALG00010028588)	DDA1 (ENSGALG00010028596)	ANO8 (ENSGALG00010028601)	GTPBP3 (ENSGALG00010028605)	PLVAP (ENSGALG00010028607)	ENSGALG00010028610	CILP2 (ENSGALG00010028510) #16	YJEFN3 (ENSGALG00010028511) #17	NDUFA13 (ENSGALG00010028512) #18	GATAD2A (ENSGALG00010028516) #20	MAU2 (ENSGALG00010028518) #21	SUGP1 (ENSGALG00010028523) #22	TM6SF2 (ENSGALG00010028525) #23	HAPLN4 (ENSGALG00010028379) #24	NCAN (ENSGALG00010028386) #25	NR2C2AP (ENSGALG00010028430) #26	RFXANK (ENSGALG00010028432) #27	BORCS8 (ENSGALG00010028439) #28	ENSGALG00010028443	MEF2B (ENSGALG00010028444) #29	TMEM161A (ENSGALG00010028131) #30	SLC25A42 (ENSGALG00010028147) #31	ARMC6 (ENSGALG00010028150) #32	SUGP2 (ENSGALG00010028124) #33	ENSGALG00010028446 #33	ENSGALG00010028152	HOMER3 (ENSGALG00010028744) #34
Turkey	MODERN SPECIES	23	ENSMGAG00000002493	ENSMGAG00000002489	ENSMGAG00000002388	ENSMGAG00000018914	ENSMGAG00000019234	USHBP1 (ENSMGAG00000019092)	ANKLE1 (ENSMGAG00000021903)	ABHD8 (ENSMGAG00000001860)	DDA1 (ENSMGAG00000003919)	ANO8 (ENSMGAG00000003374)	GTPBP3 (ENSMGAG00000020218)	ENSMGAG00000021153	YJEFN3 (ENSMGAG00000018230) #17	GATAD2A (ENSMGAG00000004036) #20	MAU2 (ENSMGAG00000004012) #21	SUGP1 (ENSMGAG00000003967) #22	TM6SF2 (ENSMGAG00000003934) #23	ENSMGAG00000020085	ENSMGAG00000004088	NDUFS7 (ENSMGAG00000004106)	GAMT (ENSMGAG00000022259)	DAZAP1 (ENSMGAG00000020659)	RPS15 (ENSMGAG00000004229)	APC2 (ENSMGAG00000018235)	ENSMGAG00000004216	ENSMGAG00000004238	ENSMGAG00000022068	ENSMGAG00000004246	ENSMGAG00000004273	THOP1 (ENSMGAG00000004287)	SGTA (ENSMGAG00000004305)
Japanese quail	MODERN SPECIES	20	NR2F6 (ENSCJPG00005011133)	USHBP1 (ENSCJPG00005011140)	BABAM1 (ENSCJPG00005011141)	ANKLE1 (ENSCJPG00005011145)	ABHD8 (ENSCJPG00005011146)	MRPL34 (ENSCJPG00005011147)	DDA1 (ENSCJPG00005011149)	ANO8 (ENSCJPG00005011150)	GTPBP3 (ENSCJPG00005011151)	ENSCJPG00005011152	CILP2 (ENSCJPG00005011154) #16	YJEFN3 (ENSCJPG00005011155) #17	NDUFA13 (ENSCJPG00005011156) #18	GATAD2A (ENSCJPG00005011157) #20	MAU2 (ENSCJPG00005011158) #21	SUGP1 (ENSCJPG00005011161) #22	TM6SF2 (ENSCJPG00005011166) #23	HAPLN4 (ENSCJPG00005011167) #24	NCAN (ENSCJPG00005011168) #25	ENSCJPG00005011170 #26	RFXANK (ENSCJPG00005011171) #27	BORCS8 (ENSCJPG00005011172) #28	ENSCJPG00005011173	MEF2B (ENSCJPG00005011174) #29	ENSCJPG00005011175	SLC25A42 (ENSCJPG00005011178) #31	ARMC6 (ENSCJPG00005011186) #32	SUGP2 (ENSCJPG00005011187) #33	ENSCJPG00005011188	ENSCJPG00005011189 #34	ENSCJPG00005011190 #34
Anatidae	ANCESTRAL SPECIES	71										ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Pink-footed goose	MODERN SPECIES	308										ENSABRG00000002971	CILP2 (ENSABRG00000003000) #16	YJEFN3 (ENSABRG00000003014) #17	NDUFA13 (ENSABRG00000003036) #18	GATAD2A (ENSABRG00000003048) #20	MAU2 (ENSABRG00000003093) #21	SUGP1 (ENSABRG00000003136) #22	TM6SF2 (ENSABRG00000003169) #23	HAPLN4 (ENSABRG00000003196) #24	NCAN (ENSABRG00000003206) #25	ENSABRG00000003239 #26	RFXANK (ENSABRG00000003275) #27	BORCS8 (ENSABRG00000003310) #28	ENSABRG00000003339	MEF2B (ENSABRG00000003346) #29	TMEM161A (ENSABRG00000003380) #30	SLC25A42 (ENSABRG00000003394) #31	ARMC6 (ENSABRG00000003410) #32	SUGP2 (ENSABRG00000003433) #33	HOMER3 (ENSABRG00000003480) #34	DDX49 (ENSABRG00000003533) #35	COPE (ENSABRG00000003553) #36
Duck	MODERN SPECIES	20	ENSAPLG00000028560	ENSAPLG00000029543	GNA11 (ENSAPLG00000004066)	ENSAPLG00000019679	ENSAPLG00000004622	S1PR4 (ENSAPLG00000001591)	NCLN (ENSAPLG00000004844)	CELF5 (ENSAPLG00000005174)	HSD11B1L (ENSAPLG00000005717)	MICOS13 (ENSAPLG00000001598)	ENSAPLG00000005780	ENSAPLG00000006355	ENSAPLG00000020158	ENSAPLG00000019522	MAU2 (ENSAPLG00000002818) #21	SUGP1 (ENSAPLG00000002500) #22	HAPLN4 (ENSAPLG00000000916) #24	ENSAPLG00000017029 #25	NR2C2AP (ENSAPLG00000016443) #26	RFXANK (ENSAPLG00000016423) #27	ENSAPLG00000025930	TMEM161A (ENSAPLG00000006657) #30	SLC25A42 (ENSAPLG00000006582) #31	ARMC6 (ENSAPLG00000006480) #32	SUGP2 (ENSAPLG00000006469) #33	HOMER3 (ENSAPLG00000008170) #34	COPE (ENSAPLG00000008757) #36	CERS1 (ENSAPLG00000008945) #37	ENSAPLG00000009148	UPF1 (ENSAPLG00000009175)	ENSAPLG00000009709
Neognathae_b	DUPLICATION
Neognathae_b	ANCESTRAL SPECIES																	ENSGT00410000025695.a.g #22
Passeriformes	ANCESTRAL SPECIES																	ENSGT00410000025695.a.g #22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00410000025695.a.g #22
Flycatcher	MODERN SPECIES	20	DAZAP1 (ENSFALG00000014010)	RPS15 (ENSFALG00000014013)	ENSFALG00000027576	ENSFALG00000014022	ENSFALG00000028718	ENSFALG00000014020	ENSFALG00000014025	ENSFALG00000014030	THOP1 (ENSFALG00000009169)	SGTA (ENSFALG00000027653)	ENSFALG00000025438	SLC39A3 (ENSFALG00000027233)	DIRAS1 (ENSFALG00000026581)	ENSFALG00000026177 #18	ENSFALG00000027214	ENSFALG00000010583 #22	TM6SF2 (ENSFALG00000028745) #23	HAPLN4 (ENSFALG00000025367) #24	NCAN (ENSFALG00000008279) #25	NR2C2AP (ENSFALG00000008269) #26	ENSFALG00000027827	ENSFALG00000009275 #34	ENSFALG00000027136	COPE (ENSFALG00000009287) #36	CERS1 (ENSFALG00000009299) #37	UPF1 (ENSFALG00000009312)	ENSFALG00000009345	ENSFALG00000025225	CRTC1 (ENSFALG00000009377)	KLHL26 (ENSFALG00000014947)	ENSFALG00000028577
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT00410000025695.a.g #22
Passeroidea	ANCESTRAL SPECIES																	ENSGT00410000025695.a.g #22
Common canary	MODERN SPECIES	173												ENSSCAG00000002718 #20	ENSSCAG00000002712	MAU2 (ENSSCAG00000002706) #21	ENSSCAG00000002704 #22	ENSSCAG00000002697 #22
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Passeriformes	ANCESTRAL SPECIES	34					ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Great tit	MODERN SPECIES	282															MAU2 (ENSPMJG00000001205) #21	ENSPMJG00000001215 #22	TM6SF2 (ENSPMJG00000001219) #23	HAPLN4 (ENSPMJG00000001224) #24	NCAN (ENSPMJG00000001279) #25	ENSPMJG00000001294 #26	ENSPMJG00000001342 #27	BORCS8 (ENSPMJG00000001351) #28	ENSPMJG00000001365	MEF2B (ENSPMJG00000001372) #29	ENSPMJG00000001384 #30
Passeriformes_d	ANCESTRAL SPECIES	35					ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019.c	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Passeriformes_g	ANCESTRAL SPECIES	39					ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019.c	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Passeroidea	ANCESTRAL SPECIES	38					ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019.c	ENSGT00390000016851	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37
Zebra finch	MODERN SPECIES	21	ANO8 (ENSTGUG00000021968)	ENSTGUG00000021258	ENSTGUG00000019139	ENSTGUG00000023781	ENSTGUG00000024009 #17	ENSTGUG00000029553 #17	NDUFA13 (ENSTGUG00000027276) #18	GATAD2A (ENSTGUG00000013885) #20	MAU2 (ENSTGUG00000013909) #21	ENSTGUG00000024768	ENSTGUG00000015926	ENSTGUG00000021489	ENSTGUG00000020486	ENSTGUG00000026134	CILP2 (ENSTGUG00000019631) #16	SUGP1 (ENSTGUG00000013941) #22	TM6SF2 (ENSTGUG00000013966) #23	HAPLN4 (ENSTGUG00000019161) #24	NCAN (ENSTGUG00000019059) #25	ENSTGUG00000020853 #26	RFXANK (ENSTGUG00000014033) #27	ENSTGUG00000024488 #28	MEF2B (ENSTGUG00000022364) #29	ENSTGUG00000023122	TMEM161A (ENSTGUG00000025437) #30	SLC25A42 (ENSTGUG00000020561) #31	ARMC6 (ENSTGUG00000001090) #32	SUGP2 (ENSTGUG00000001088) #33	HOMER3 (ENSTGUG00000001080) #34	DDX49 (ENSTGUG00000001072) #35	ENSTGUG00000029565 #36
Common canary	MODERN SPECIES	173													ENSSCAG00000002718 #20	ENSSCAG00000002712	MAU2 (ENSSCAG00000002706) #21	ENSSCAG00000002704 #22	ENSSCAG00000002697 #22
Medium ground finch	MODERN SPECIES	522														MAU2 (ENSGFOG00000009789) #21	ENSGFOG00000009783	SUGP1 (ENSGFOG00000009468) #22	ENSGFOG00000009453 #23	HAPLN4 (ENSGFOG00000009448) #24
Flycatcher	MODERN SPECIES	444															ENSFALG00000010868 #21	ENSFALG00000024908 #22
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00940000160748	ENSGT00530000063974.a	ENSGT00390000016934	ENSGT00510000049316	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35
Kakapo	MODERN SPECIES	13	ENSSHBG00005015936	NR2F6 (ENSSHBG00005015943)	ENSSHBG00005015946	BABAM1 (ENSSHBG00005015951)	ANKLE1 (ENSSHBG00005015957)	ABHD8 (ENSSHBG00005015962)	MRPL34 (ENSSHBG00005015967)	ANO8 (ENSSHBG00005015977)	GTPBP3 (ENSSHBG00005015979)	ENSSHBG00005015986	CILP2 (ENSSHBG00005015990) #16	YJEFN3 (ENSSHBG00005016001) #17	NDUFA13 (ENSSHBG00005016006) #18	GATAD2A (ENSSHBG00005016010) #20	MAU2 (ENSSHBG00005016045) #21	SUGP1 (ENSSHBG00005016077) #22	TM6SF2 (ENSSHBG00005016084) #23	HAPLN4 (ENSSHBG00005016090) #24	NCAN (ENSSHBG00005016099) #25	NR2C2AP (ENSSHBG00005016311) #26	RFXANK (ENSSHBG00005016324) #27	BORCS8 (ENSSHBG00005016340) #28	ENSSHBG00005016346	MEF2B (ENSSHBG00005016361) #29	TMEM161A (ENSSHBG00005016377) #30	SLC25A42 (ENSSHBG00005016405) #31	ARMC6 (ENSSHBG00005016636) #32	SUGP2 (ENSSHBG00005016643) #33	ENSSHBG00005016648	HOMER3 (ENSSHBG00005016668) #34	ENSSHBG00005016679 #34
Golden eagle	MODERN SPECIES	3	NR2F6 (ENSACCG00020005019)	USHBP1 (ENSACCG00020005028)	BABAM1 (ENSACCG00020005036)	ANKLE1 (ENSACCG00020005042)	ABHD8 (ENSACCG00020005049)	MRPL34 (ENSACCG00020005054)	DDA1 (ENSACCG00020005063)	ANO8 (ENSACCG00020005101)	GTPBP3 (ENSACCG00020005142)	ENSACCG00020005158	CILP2 (ENSACCG00020005178) #16	YJEFN3 (ENSACCG00020005188) #17	NDUFA13 (ENSACCG00020005202) #18	GATAD2A (ENSACCG00020005214) #20	MAU2 (ENSACCG00020005272) #21	SUGP1 (ENSACCG00020005346) #22	TM6SF2 (ENSACCG00020005379) #23	HAPLN4 (ENSACCG00020005415) #24	NCAN (ENSACCG00020005458) #25	ENSACCG00020005528	NR2C2AP (ENSACCG00020005548) #26	RFXANK (ENSACCG00020005611) #27	BORCS8 (ENSACCG00020005634) #28	ENSACCG00020005651	MEF2B (ENSACCG00020005665) #29	TMEM161A (ENSACCG00020005730) #30	SLC25A42 (ENSACCG00020005755) #31	ARMC6 (ENSACCG00020005768) #32	SUGP2 (ENSACCG00020005795) #33	HOMER3 (ENSACCG00020005833) #34	DDX49 (ENSACCG00020005865) #35
Anura	ANCESTRAL SPECIES	119		ENSGT00390000017123.b	ENSGT00940000158075	ENSGT00940000162805	ENSGT00390000007336	ENSGT00390000012240	ENSGT00390000007029	ENSGT00940000157019	ENSGT00390000016851	ENSGT00390000006166	ENSGT00970000194286	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000016620	ENSLLEG00000016656	ENSLLEG00000016943	ENSLLEG00000016967	ENSLLEG00000017004	ENSLLEG00000017036	UPF1 (ENSLLEG00000017156)	AP1M1 (ENSLLEG00000018290)	CIB3 (ENSLLEG00000019959)	ENSLLEG00000020029	RAB8A (ENSLLEG00000020123)	TPM4 (ENSLLEG00000020308)	ENSLLEG00000020874	GATAD2A (ENSLLEG00000020909) #20	MAU2 (ENSLLEG00000021086) #21	SUGP1 (ENSLLEG00000021601) #22	TM6SF2 (ENSLLEG00000021856) #23	HAPLN4 (ENSLLEG00000022101) #24	NCAN (ENSLLEG00000022173) #25	ENSLLEG00000022581	ENSLLEG00000022604	NR2C2AP (ENSLLEG00000022668) #26	RFXANK (ENSLLEG00000022726) #27	BORCS8 (ENSLLEG00000022858) #28	ENSLLEG00000022900	MEF2B (ENSLLEG00000022939) #29	TMEM161A (ENSLLEG00000023032) #30	SLC25A42 (ENSLLEG00000023359) #31	ENSLLEG00000023562	ARMC6 (ENSLLEG00000023586) #32	SUGP2 (ENSLLEG00000023662) #33
Frog	MODERN SPECIES		rnf170 (ENSXETG00000027376)	hook3 (ENSXETG00000010213)	trabd2a (ENSXETG00000013102)	abhd8 (ENSXETG00000013090)	MRPL34 (ENSXETG00000036912)	dda1 (ENSXETG00000013089)	ano8 (ENSXETG00000013077)	gtpbp3 (ENSXETG00000013066)	ENSXETG00000042229	plvap (ENSXETG00000036707)	cilp2 (ENSXETG00000013064) #16	yjefn3 (ENSXETG00000013061) #17	exosc3 (ENSXETG00000013060)	gatad2a (ENSXETG00000013053) #20	mau2 (ENSXETG00000013046) #21	sugp1 (ENSXETG00000013044) #22	borcs8 (ENSXETG00000040421) #28	rfxank (ENSXETG00000013042) #27	nr2c2ap (ENSXETG00000037690) #26	ncan (ENSXETG00000014328) #25	hapln4 (ENSXETG00000014330) #24	tm6sf2 (ENSXETG00000014331) #23	tmem221 (ENSXETG00000036930)	tmem161a (ENSXETG00000014335) #30	slc25a42 (ENSXETG00000014336) #31	armc6 (ENSXETG00000014338) #32	sugp2 (ENSXETG00000030450) #33	micos13 (ENSXETG00000039864)	hsd11b1l (ENSXETG00000014342)	celf5 (ENSXETG00000014344)	s1pr4 (ENSXETG00000044238)
Coelacanth	MODERN SPECIES	749									si:ch211-212d10.2 (ENSLACG00000002892)	CILP2 (ENSLACG00000003357) #16	YJEFN3 (ENSLACG00000005018) #17	NDUFA13 (ENSLACG00000008322) #18	TSSK6 (ENSLACG00000008538) #19	GATAD2A (ENSLACG00000008883) #20	MAU2 (ENSLACG00000010940) #21	SUGP1 (ENSLACG00000011311) #22	TM6SF2 (ENSLACG00000011802) #23	HAPLN4 (ENSLACG00000012117) #24	ENSLACG00000012721 #25	NR2C2AP (ENSLACG00000014414) #26	RFXANK (ENSLACG00000014451) #27	BORCS8 (ENSLACG00000014590) #28	ENSLACG00000014629	MEF2B (ENSLACG00000015083) #29
Actinopterygii	ANCESTRAL SPECIES	61										ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b	ENSGT00940000159142	ENSGT00940000157113	ENSGT00940000161332	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000178278	ENSGT01030000234551	ENSGT00390000018225.A	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21
Reedfish	MODERN SPECIES	3	diras1b (ENSECRG00000013404)	SLC39A3 (ENSECRG00000013414)	sgta (ENSECRG00000013438)	thop1 (ENSECRG00000013480)	ENSECRG00000013515	ENSECRG00000013543	ENSECRG00000013559	ENSECRG00000013565	ENSECRG00000013601	fgf22 (ENSECRG00000013664)	POLRMT (ENSECRG00000013686)	HCN2 (ENSECRG00000013721)	bsg (ENSECRG00000013739)	rnf126 (ENSECRG00000013753)	fstl3 (ENSECRG00000013774)	SUGP1 (ENSECRG00000013796) #22	stk11 (ENSECRG00000013845)	CBARP (ENSECRG00000013916)	atp5f1d (ENSECRG00000013941)	midn (ENSECRG00000013954)	ENSECRG00000013974	ENSECRG00000013998	ENSECRG00000014047	si:ch211-212d10.2 (ENSECRG00000014163)	CILP2 (ENSECRG00000014240) #16	yjefn3 (ENSECRG00000014433) #17	NDUFA13 (ENSECRG00000014455) #18	gatad2ab (ENSECRG00000014488) #20	MAU2 (ENSECRG00000014583) #21	ARMC6 (ENSECRG00000014771) #32	slc25a42 (ENSECRG00000014797) #31
Neopterygii	ANCESTRAL SPECIES	67		ENSGT00950000183112.b.a.a	ENSGT00940000177291	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C	ENSGT00940000162161.A	ENSGT00910000144271.A	ENSGT00910000144271.B	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b	ENSGT00940000159142	ENSGT00940000157113	ENSGT00940000161332	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551	ENSGT00390000018225.A	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198.b #21	ENSGT01060000249150
Osteoglossocephalai	ANCESTRAL SPECIES	72	ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00950000183112.b.a.a.b.b	ENSGT00940000162487	ENSGT00390000002629	ENSGT00950000182925.C.a.b	ENSGT00940000162161.A	ENSGT00910000144271.A	ENSGT00910000144271.B	ENSGT00940000161721	ENSGT00390000008060	ENSGT00940000156523.b	ENSGT00940000159142	ENSGT00940000157113	ENSGT00940000161332	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00390000009230.a	ENSGT00390000017576	ENSGT00510000049027.c	ENSGT00940000153524.c	ENSGT00940000153524.d	ENSGT01030000234551.i	ENSGT00390000018225.A	ENSGT00390000008152.B.a #16	ENSGT00390000000719 #18	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000007227.b #17	ENSGT00940000160464 #19
Clupeocephala	ANCESTRAL SPECIES	125	ENSGT01030000234539.a.a.a.f	ENSGT00940000153487.b.a.s.a	ENSGT00940000157036.e.a	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234534.B.a.a.a.a.a.b	ENSGT00940000160088	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000007227.b #17	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00940000160464 #19	ENSGT00390000004097.a.e #20	ENSGT00390000012198.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23
Otomorpha	ANCESTRAL SPECIES	201	ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b	ENSGT00390000018299	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a	ENSGT00940000160088	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.b	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.a #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23
Clupeiformes	ANCESTRAL SPECIES	177		ENSGT00940000153487.b.a.s.b	ENSGT00940000157036.e.b	ENSGT01000000214836	ENSGT00950000183005.b.a	ENSGT00940000162613	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000159261.d.b	ENSGT01030000234518.B.a.a	ENSGT00940000160088	ENSGT00940000154716.hc.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.b	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.d #21	ENSGT00390000014810.b.c	ENSGT00390000002913 #32	ENSGT00940000158163.a #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d ##13	ENSGT00390000013841
Atlantic herring	MODERN SPECIES	17	KCNJ10 (ENSCHAG00000003393)	ENSCHAG00000003468	ENSCHAG00000003489	ENSCHAG00000003518	ENSCHAG00000003544	ENSCHAG00000003559	ENSCHAG00000003584	ENSCHAG00000003596	ENSCHAG00000003603	ENSCHAG00000003644	ENSCHAG00000003655	ENSCHAG00000003667	ENSCHAG00000003699	HCN2 (ENSCHAG00000003730)	rnf126 (ENSCHAG00000003947)	SUGP1 (ENSCHAG00000003995) #22	ENSCHAG00000004380	ENSCHAG00000004398	ENSCHAG00000004437	rnf126 (ENSCHAG00000004467)	stk11 (ENSCHAG00000004539)	ENSCHAG00000004733	ENSCHAG00000004757	ENSCHAG00000005204	ENSCHAG00000005277	ENSCHAG00000005299	YJEFN3 (ENSCHAG00000005316) #17	ENSCHAG00000005325	ENSCHAG00000005356	NDUFA13 (ENSCHAG00000005365) #18	GATAD2A (ENSCHAG00000005389) #20
Denticle herring	MODERN SPECIES	14	ENSDCDG00000028511	mbd3a (ENSDCDG00000028507)	MEX3D (ENSDCDG00000028502)	UNC13A (ENSDCDG00000023562)	BTBD2 (ENSDCDG00000023410)	eef2b (ENSDCDG00000023176)	ENSDCDG00000023174	ENSDCDG00000023172	RXFP3 (ENSDCDG00000023171)	sirt6 (ENSDCDG00000023165)	ENSDCDG00000022621	HSD11B1L (ENSDCDG00000022481)	ENSDCDG00000022463	ENSDCDG00000022346	rnf126 (ENSDCDG00000022336)	SUGP1 (ENSDCDG00000022221) #22	stk11 (ENSDCDG00000022204)	CBARP (ENSDCDG00000022198)	ENSDCDG00000022196	cirbpa (ENSDCDG00000022193)	YJEFN3 (ENSDCDG00000022190) #17	NDUFA13 (ENSDCDG00000022188) #18	GATAD2A (ENSDCDG00000022185) #20	MAU2 (ENSDCDG00000022067) #21	ENSDCDG00000022049	ARMC6 (ENSDCDG00000022040) #32	ENSDCDG00000022030	ARMC6 (ENSDCDG00000022034) #32	slc25a42 (ENSDCDG00000022012) #31	ENSDCDG00000021977 #25	tm6sf2a (ENSDCDG00000021974) #23
Otophysi	ANCESTRAL SPECIES	380																ENSGT00410000025695.a #22	ENSGT00390000012198.b #21	ENSGT00390000004097.a.f #20	ENSGT00390000000719 #18	ENSGT00940000165622.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050
Characiphysae	ANCESTRAL SPECIES	34	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a	ENSGT00940000157924	ENSGT00940000157178.g	ENSGT01030000234542.b.b.a.a.a.b.wb.a.a	ENSGT00940000157246.a	ENSGT00940000160466	ENSGT00410000025695.a #22	ENSGT00390000012198.b #21	ENSGT00390000004097.a.f #20	ENSGT00390000000719 #18	ENSGT00940000165622.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050
Channel catfish	MODERN SPECIES	12	Lox (ENSIPUG00000005255)	nmrk2 (ENSIPUG00000005267)	ATCAY (ENSIPUG00000005280)	cplx4c (ENSIPUG00000005311)	rx2 (ENSIPUG00000005326)	CALR (ENSIPUG00000005374)	ENSIPUG00000005411	ENSIPUG00000005421	ENSIPUG00000006478	Klf2 (ENSIPUG00000006554)	AP1M1 (ENSIPUG00000006581)	LPL (ENSIPUG00000006646)	TPM4 (ENSIPUG00000006687)	rab8a (ENSIPUG00000006761)	CIB3 (ENSIPUG00000006864)	sugp1 (ENSIPUG00000006883) #22	mau2 (ENSIPUG00000006952) #21	GATAD2A (ENSIPUG00000007020) #20	ndufa13 (ENSIPUG00000007031) #18	YJEFN3 (ENSIPUG00000007059) #17	CIRBP (ENSIPUG00000007089)	midn (ENSIPUG00000007122)	ENSIPUG00000007136	stk11 (ENSIPUG00000007147)	ENSIPUG00000007173	ENSIPUG00000007177	PNP (ENSIPUG00000007195)	KCNJ10 (ENSIPUG00000007237)	foxl2b (ENSIPUG00000007251)	nop9 (ENSIPUG00000007265)	TGM1 (ENSIPUG00000007280)
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a	ENSGT00940000157924	ENSGT00940000157178.g	ENSGT01030000234542.b.b.a.a.a.b.wb.a.a	ENSGT00940000157246.a	ENSGT00940000160466	ENSGT00410000025695.a #22	ENSGT00390000012198.b #21	ENSGT00390000004097.a.f #20	ENSGT00390000000719 #18	ENSGT00940000165622.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT01030000234767.b.a	ENSGT00640000091492.a.d	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d	ENSGT00940000155020.u.b.f	ENSGT01030000234918.a	ENSGT01030000235169	ENSGT00940000159301.c.b
Characoidei	ANCESTRAL SPECIES	45	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a	ENSGT00940000157924	ENSGT00940000157178.g	ENSGT01030000234542.b.b.a.a.a.b.wb.a.a	ENSGT00940000157246.a	ENSGT00940000160466	ENSGT00410000025695.a #22	ENSGT00390000012198.b #21	ENSGT00390000004097.a.f #20	ENSGT00390000000719 #18	ENSGT00940000165622.b	ENSGT00510000049027.d	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT01030000234767.b.a	ENSGT00640000091492.a.d	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d	ENSGT00940000155020.u.b.f	ENSGT01030000234918.a.c	ENSGT01030000235169	ENSGT00940000159301.c.b
Red-bellied piranha	MODERN SPECIES	48	ENSPNAG00000025498	loxl5b (ENSPNAG00000006766)	nmrk2 (ENSPNAG00000003921)	ATCAY (ENSPNAG00000025397)	cplx4c (ENSPNAG00000025384)	ENSPNAG00000003912	rx2 (ENSPNAG00000025348)	ENSPNAG00000025330	ENSPNAG00000005719	klf2b (ENSPNAG00000025132)	ap1m1 (ENSPNAG00000025118)	LPL (ENSPNAG00000025045)	TPM4 (ENSPNAG00000025032)	rab8a (ENSPNAG00000005890)	CIB3 (ENSPNAG00000024947)	SUGP1 (ENSPNAG00000004723) #22	MAU2 (ENSPNAG00000006354) #21	GATAD2A (ENSPNAG00000024686) #20	NDUFA13 (ENSPNAG00000024633) #18	YJEFN3 (ENSPNAG00000024601) #17	cirbpa (ENSPNAG00000024569)	ENSPNAG00000024555	ENSPNAG00000003830	stk11 (ENSPNAG00000005021)	ENSPNAG00000024493	vapal (ENSPNAG00000024482)	ENSPNAG00000005637	APCDD1 (ENSPNAG00000024431)	epb41l3b (ENSPNAG00000006475)	ENSPNAG00000024288	LRRC30 (ENSPNAG00000024271)
Mexicana tetra	MODERN SPECIES	8	foxl2b (ENSAMXG00000018076)	ENSAMXG00000043022	TGM1 (ENSAMXG00000033868)	abhd4 (ENSAMXG00000040865)	dad1 (ENSAMXG00000041545)	ENSAMXG00000034304	ENSAMXG00000037234	ENSAMXG00000014005	ENSAMXG00000039322	ENSAMXG00000044095	ENSAMXG00000033632	LPL (ENSAMXG00000002796)	TPM4 (ENSAMXG00000032280)	RAB8A (ENSAMXG00000002853)	CIB3 (ENSAMXG00000038031)	SUGP1 (ENSAMXG00000002872) #22	MAU2 (ENSAMXG00000002971) #21	GATAD2A (ENSAMXG00000035421) #20	NDUFA13 (ENSAMXG00000038688) #18	YJEFN3 (ENSAMXG00000035910) #17	cirbpa (ENSAMXG00000002894)	ENSAMXG00000031123	ENSAMXG00000041704	stk11 (ENSAMXG00000009149)	vapal (ENSAMXG00000009145)	ENSAMXG00000034883	APCDD1 (ENSAMXG00000042208)	epb41l3b (ENSAMXG00000041057)	ENSAMXG00000012186	PTPRM (ENSAMXG00000012131)	ENSAMXG00000035474
Electric eel	MODERN SPECIES	318										klf2b (ENSEEEG00000023858)	ap1m1 (ENSEEEG00000023795)	LPL (ENSEEEG00000023679)	TPM4 (ENSEEEG00000023652)	rab8a (ENSEEEG00000023636)	CIB3 (ENSEEEG00000023628)	SUGP1 (ENSEEEG00000023627) #22	MAU2 (ENSEEEG00000023625) #21	GATAD2A (ENSEEEG00000023623) #20	NDUFA13 (ENSEEEG00000023622) #18	cirbpa (ENSEEEG00000023620)	ENSEEEG00000023619	CBARP (ENSEEEG00000023617)	stk11 (ENSEEEG00000023616)	ENSEEEG00000023615	vapal (ENSEEEG00000023614)	APCDD1 (ENSEEEG00000023613)	epb41l3b (ENSEEEG00000023612)	ENSEEEG00000023611	ENSEEEG00000023610	ENSEEEG00000023609
Cyprinoidei	ANCESTRAL SPECIES	222																ENSGT00410000025695.a #22	ENSGT00390000012198.b #21	ENSGT00390000004097.a.f #20	ENSGT00390000000719 #18	ENSGT00940000165622.b	ENSGT00390000009230.b	ENSGT00940000158050	ENSGT00940000153524.c	ENSGT00510000049027.d
Cyprininae	ANCESTRAL SPECIES	547									ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.a	ENSGT01100000263594	ENSGT00940000163250.C.i.b	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00410000025695.a #22	ENSGT00390000012198.b.f.a #21	ENSGT00390000012198.b.f.b #21	ENSGT00390000004097.a.f.a #20	ENSGT00390000000719 #18	ENSGT00390000007227.b.p #17	ENSGT00940000165622.b.d	ENSGT00940000153524.c	ENSGT00510000049027.d.a	ENSGT00390000009230.b.b	ENSGT00940000158050	ENSGT00940000155020.u.b.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	tcf3a (ENSCARG00000017386)	ENSCARG00000017577	ONECUT3 (ENSCARG00000017584)	ENSCARG00000017590	ENSCARG00000017598	ENSCARG00000017605	sf3a2 (ENSCARG00000017613)	plekhj1 (ENSCARG00000017621)	ISYNA1 (ENSCARG00000017641)	ENSCARG00000003888	ENSCARG00000003904	ENSCARG00000003923	ENSCARG00000003954	FEM1A (ENSCARG00000003965)	PTPRS (ENSCARG00000004135)	SUGP1 (ENSCARG00000004806) #22	MAU2 (ENSCARG00000004820) #21	cirbpa (ENSCARG00000004858)	ENSCARG00000004872	ENSCARG00000004875	CBARP (ENSCARG00000004889)	stk11 (ENSCARG00000004911)	PTPRM (ENSCARG00000005097)	ENSCARG00000007057	ENSCARG00000007061	ENSCARG00000007069	ENSCARG00000007076	epb41l3b (ENSCARG00000007110)	APCDD1 (ENSCARG00000007204)	vapal (ENSCARG00000007221)	ENSCARG00000007249
Goldfish	MODERN SPECIES	19	ENSCARG00000058418	ESYT2 (ENSCARG00000065674)	ENSCARG00000066502	LACTB2 (ENSCARG00000066543)	SLCO5A1 (ENSCARG00000066551)	gtpbp4 (ENSCARG00000066562)	ENSCARG00000066594	ENSCARG00000066599	tmem71 (ENSCARG00000066609)	ift57 (ENSCARG00000066619)	cavin4a (ENSCARG00000066729)	ENSCARG00000066738	slc39a6 (ENSCARG00000066756)	CYP7B1 (ENSCARG00000066819)	PTPRS (ENSCARG00000066845)	ENSCARG00000066929 #22	MAU2 (ENSCARG00000067081) #21	ENSCARG00000067152	ENSCARG00000067161	ENSCARG00000067200	CBARP (ENSCARG00000067232)	stk11 (ENSCARG00000067259)	ENSCARG00000067309	ENSCARG00000067319	dnaaf6 (ENSCARG00000067329)	pip4p1a (ENSCARG00000067346)	zgc:152670 (ENSCARG00000067373)	zgc:152670 (ENSCARG00000067392)	lig1 (ENSCARG00000004212)	mpz (ENSCARG00000006555)	atp1a2a (ENSCARG00000006714)
Cyprininae_a	ANCESTRAL SPECIES	613									ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.a	ENSGT01100000263594	ENSGT00940000163250.C.i.b	ENSGT00940000161210	ENSGT00940000153617.A.a.b	ENSGT00940000165115.b	ENSGT00410000025695.a #22	ENSGT00390000012198.b.f.a #21
Common carp reference	MODERN SPECIES	29										ENSCCRG00000069356	ENSCCRG00000063924	ENSCCRG00000080756	ENSCCRG00000060570	ENSCCRG00000048859	ENSCCRG00000071301	ENSCCRG00000079559 #22	ENSCCRG00000080463 #21	ENSCCRG00000045632 #18	ENSCCRG00000064873	ENSCCRG00000057786	ENSCCRG00000069672	ENSCCRG00000067913	ENSCCRG00000081706	ENSCCRG00000051541	ENSCCRG00000072730	ENSCCRG00000056413	ENSCCRG00000063644	ENSCCRG00000035358	ENSCCRG00000064811	epb41l3b (ENSCCRG00000005264)	ENSCCRG00000082718
Golden-line barbel	MODERN SPECIES	1307												ENSSGRG00000013487	ENSSGRG00000013493	FEM1A (ENSSGRG00000013494)	ENSSGRG00000013495	ENSSGRG00000013765 #22	MAU2 (ENSSGRG00000013766) #21
Zebrafish	MODERN SPECIES	11	ENSDARG00000100128 #25	ENSDARG00000095678	ENSDARG00000092745	ENSDARG00000087057	ENSDARG00000089388	ENSDARG00000079614	ENSDARG00000095032	ENSDARG00000093203	ENSDARG00000075355	ENSDARG00000095448	ENSDARG00000073735	ENSDARG00000110978	ENSDARG00000111722	stk11 (ENSDARG00000046074)	ENSDARG00000089172	ENSDARG00000075936 #22	MAU2 (ENSDARG00000042056) #21	ENSDARG00000090544	cirbpa (ENSDARG00000103672)	PTPRS (ENSDARG00000110940)	ENSDARG00000067817	ENSDARG00000116727	epb41l3b (ENSDARG00000019917)	APCDD1 (ENSDARG00000098203)	ENSDARG00000115672	vapal (ENSDARG00000115862)	ENSDARG00000078442	foxl2b (ENSDARG00000068417)	KCNJ10 (ENSDARG00000105022)	pnp5b (ENSDARG00000099802)	ENSDARG00000100199
Euteleosteomorpha	ANCESTRAL SPECIES	64	ENSGT00940000157036.e.a	ENSGT00940000153487.b.a.s.a	ENSGT01030000234539.a.a.a.f	ENSGT00940000166634	ENSGT00950000183103.d.b.a.b	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b	ENSGT00950000183190.a.a.b.d
Protacanthopterygii	ANCESTRAL SPECIES	43	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000163253.b.c.a.b	ENSGT01030000234567.B.a.a.b.b.a.a	ENSGT00940000165622.i.a	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	874											ENSGT00950000183104.B.a.b.a.a.a	ENSGT00940000162487.s.b	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000156523.b.d.c	ENSGT00940000157113.d.g	ENSGT00410000025695.a.c #22	ENSGT00940000158050.h.a.b	ENSGT00390000009230.b.f
Huchen	MODERN SPECIES	1314									pip4p2 (ENSHHUG00000000071)	tmem64 (ENSHHUG00000000092)	fzr1a (ENSHHUG00000000096)	ENSHHUG00000000478	ENSHHUG00000000520	ENSHHUG00000000524	rnf126 (ENSHHUG00000000562)	SUGP1 (ENSHHUG00000000572) #22	stk11 (ENSHHUG00000000586)	ENSHHUG00000000598
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000154662.d.l.b.a	ENSGT00940000159179.g.c	ENSGT00940000161905.b	ENSGT00940000162613.g	ENSGT00950000183005.b.a.e	ENSGT00940000157036.e.b.a	ENSGT00940000153487.b.a.s.b.c	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000164500.a.e	ENSGT00720000108823.i	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00940000162487.s.b	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000156523.b.d.c	ENSGT00940000157113.d.g	ENSGT00410000025695.a.c #22	ENSGT00940000158050.h.a.b	ENSGT00390000009230.b.f	ENSGT00390000005847.e	ENSGT00940000160466.d	ENSGT00940000157246.a.e	ENSGT00940000164495.c.a.e	ENSGT00940000155438.a.p	ENSGT00940000163917.a.b.d	ENSGT00940000154779.a.a.c.g	ENSGT00940000156845.nc.b	ENSGT00940000164530.d.b	ENSGT00940000164530.c	ENSGT00940000155404.i.a.d.a	ENSGT00940000157375.d.d	ENSGT00940000158753.g.a
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000154662.d.l.b.b	ENSGT00940000159179.g.d	ENSGT00940000161905.b	ENSGT00940000162613.g	ENSGT00950000183005.b.a.e	ENSGT00940000157036.e.b.a	ENSGT00940000153487.b.a.s.b.c	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000164500.a.e	ENSGT00720000108823.i	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00940000162487.s.b	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000156523.b.d.c	ENSGT00940000157113.d.g	ENSGT00410000025695.a.c #22	ENSGT00940000158050.h.a.b	ENSGT01070000253775.a.d.a.b.b.h.a.c.a	ENSGT00730000111114.e.a.a	ENSGT00730000111114.f	ENSGT00950000182893.a.a.b.a.d	ENSGT00940000160486.c.b	ENSGT00950000182909.b.b.a.i	ENSGT00530000063956.a.g	ENSGT01030000234633.B.b.a.d	ENSGT00390000007796.e	ENSGT00550000075016.d.b	ENSGT00390000008161.a.a.a.b.a	ENSGT00940000159165.e	ENSGT00940000158060.h.a	ENSGT00940000156172.a.d
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000012382	MEX3D (ENSOMYG00000020732)	mbd3a (ENSOMYG00000020713)	tcf3a (ENSOMYG00000020336)	map2k2b (ENSOMYG00000020235)	ENSOMYG00000020234	ENSOMYG00000020232	ENSOMYG00000067324	ENSOMYG00000020229	sf3a2 (ENSOMYG00000020220)	ENSOMYG00000019806	ENSOMYG00000019727	ENSOMYG00000066967	ENSOMYG00000019684	ENSOMYG00000019626	ENSOMYG00000019570 #22	ENSOMYG00000019510	ENSOMYG00000075714	ENSOMYG00000019220	ENSOMYG00000019320	ENSOMYG00000019182	ENSOMYG00000019177	ENSOMYG00000019150	zfp313 (ENSOMYG00000019140)	ENSOMYG00000066424	ENSOMYG00000019119	ENSOMYG00000019099	ENSOMYG00000062024	PRPF6 (ENSOMYG00000019079)	ENSOMYG00000059412	ZNF512B (ENSOMYG00000019034)
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000154662.d.l.b.b	ENSGT00940000159179.g.d	ENSGT00940000161905.b	ENSGT00940000162613.g	ENSGT00950000183005.b.a.e	ENSGT00940000157036.e.b.a	ENSGT00940000153487.b.a.s.b.c	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000164500.a.e	ENSGT00720000108823.i	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00940000162487.s.b	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000156523.b.d.c	ENSGT00940000157113.d.g	ENSGT00410000025695.a.c #22	ENSGT00940000158050.h.a.b	ENSGT00940000158588.d.b.a	ENSGT00950000183067.a.b.b.vb.b	ENSGT00390000005847.e	ENSGT00940000160466.d	ENSGT00940000164495.c.a.e	ENSGT00940000154779.a.a.c.g	ENSGT00940000156845.nc.b	ENSGT00940000164530.d.b	ENSGT00940000155404.i.a.d.a	ENSGT00940000157375.d.d	ENSGT00940000158753.h	ENSGT00510000047872.s	ENSGT00940000161753.f.b	ENSGT00940000153424.a.a.d
Coho salmon	MODERN SPECIES	19	ENSOKIG00005041426	ENSOKIG00005041410	BTBD2 (ENSOKIG00005041142)	eef2b (ENSOKIG00005040779)	MEX3D (ENSOKIG00005039248)	mbd3a (ENSOKIG00005039227)	tcf3a (ENSOKIG00005038925)	map2k2b (ENSOKIG00005038237)	ENSOKIG00005038182	sf3a2 (ENSOKIG00005038153)	ENSOKIG00005037950	ENSOKIG00005037904	ENSOKIG00005037877	ENSOKIG00005037817	RNF126 (ENSOKIG00005037713)	ENSOKIG00005048082 #22	STK11 (ENSOKIG00005048064)	RANBP3 (ENSOKIG00005048041)	ENSOKIG00005048011	pnhd (ENSOKIG00005048003)	CIB3 (ENSOKIG00005047974)	ENSOKIG00005047964	ENSOKIG00005047957	ENSOKIG00005047674	ENSOKIG00005047609	INSR (ENSOKIG00005047213)	arhgef18a (ENSOKIG00005047139)	ENSOKIG00005047124	lsm7 (ENSOKIG00005047106)	DAPK3 (ENSOKIG00005047035)	ENSOKIG00005047009
Chinook salmon	MODERN SPECIES	20	BTBD2 (ENSOTSG00005016354)	ENSOTSG00005016348	ENSOTSG00005016347	MEX3D (ENSOTSG00005016346)	mbd3a (ENSOTSG00005016345)	tcf3a (ENSOTSG00005016324)	map2k2b (ENSOTSG00005016323)	ENSOTSG00005016321	ENSOTSG00005016320	sf3a2 (ENSOTSG00005016319)	fzr1a (ENSOTSG00005016057)	ENSOTSG00005016051	ENSOTSG00005016048	ENSOTSG00005016037	rnf126 (ENSOTSG00005016028)	ENSOTSG00005016017 #22	stk11 (ENSOTSG00005016016)	klf2b (ENSOTSG00005016015)	loxl5b (ENSOTSG00005016013)	ENSOTSG00005013380	ENSOTSG00005013371	ENSOTSG00005013370	insra (ENSOTSG00005012927)	arhgef18a (ENSOTSG00005012924)	ENSOTSG00005012923	lsm7 (ENSOTSG00005012920)	ENSOTSG00005012919	ENSOTSG00005012918	ENSOTSG00005012916	prkci (ENSOTSG00005009959)	ENSOTSG00005009953
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000154662.d.l.b.a	ENSGT00940000159179.g.c	ENSGT00940000161905.b	ENSGT00940000162613.g	ENSGT00950000183005.b.a.e	ENSGT00940000157036.e.b.a	ENSGT00940000153487.b.a.s.b.c	ENSGT00950000183103.d.b.a.a.a.a	ENSGT00940000164500.a.e	ENSGT00720000108823.i	ENSGT00950000183104.B.a.b.a.a.a	ENSGT00940000162487.s.b	ENSGT00950000182925.C.a.a.c.a	ENSGT00940000156523.b.d.c	ENSGT00940000157113.d.g	ENSGT00410000025695.a.c #22	ENSGT00940000158050.h.a.b	ENSGT00390000009230.b.f	ENSGT01070000253775.a.d.a.b.b.h.a.c	ENSGT00730000111114.f	ENSGT00950000182893.a.a.b.a.d	ENSGT00940000160486.c.b	ENSGT00950000182909.b.b.a.i	ENSGT00530000063956.a.g	ENSGT01030000234633.B.b.a.d	ENSGT00390000007796.e	ENSGT00550000075016.d.b	ENSGT00390000008161.a.a.a.b.a	ENSGT00940000159165.e	ENSGT00940000158060.h.a	ENSGT00940000156172.a.d
Atlantic salmon	MODERN SPECIES	22	MEX3D (ENSSSAG00000120967)	mbd3 (ENSSSAG00000081084)	ENSSSAG00000102781	tcf3a (ENSSSAG00000081096)	map2k2b (ENSSSAG00000081195)	ENSSSAG00000081249	ENSSSAG00000081250	sf3a2 (ENSSSAG00000081251)	ENSSSAG00000080501	ENSSSAG00000090503	ENSSSAG00000081306	ENSSSAG00000093405	ENSSSAG00000090795	ENSSSAG00000081313	ENSSSAG00000085746	ENSSSAG00000081319 #22	ENSSSAG00000081329	ENSSSAG00000101882	ENSSSAG00000081335	ENSSSAG00000049450	ENSSSAG00000049420	ENSSSAG00000049412	ENSSSAG00000049378	ENSSSAG00000049340	KLF2 (ENSSSAG00000049310)	ENSSSAG00000085860	ENSSSAG00000049280	ENSSSAG00000049254	ENSSSAG00000046454	mfsd14a2 (ENSSSAG00000045290)	insra (ENSSSAG00000041161)
River trout	MODERN SPECIES	24	ENSSTUG00000019080	eef2b (ENSSTUG00000018799)	BTBD2 (ENSSTUG00000018179)	UNC13A (ENSSTUG00000017341)	MEX3D (ENSSTUG00000017314)	mbd3a (ENSSTUG00000017305)	tcf3a (ENSSTUG00000016901)	map2k2b (ENSSTUG00000016240)	ENSSTUG00000016203	sf3a2 (ENSSTUG00000016194)	fzr1a (ENSSTUG00000015478)	ENSSTUG00000015393	ENSSTUG00000015383	ENSSTUG00000015315	rnf126 (ENSSTUG00000015294)	SUGP1 (ENSSTUG00000015272) #22	stk11 (ENSSTUG00000015207)	ENSSTUG00000015186	ENSSTUG00000014850	zhx3b (ENSSTUG00000014823)	mafba (ENSSTUG00000014810)	ENSSTUG00000014803	rnf114 (ENSSTUG00000014796)	ENSSTUG00000014793	spata2 (ENSSTUG00000014790)	aar2 (ENSSTUG00000014776)	prpf6 (ENSSTUG00000014754)	ENSSTUG00000014729	ZNF512B (ENSSTUG00000014661)	ENSSTUG00000014650	ZBTB46 (ENSSTUG00000014615)
Salmoninae	ANCESTRAL SPECIES	239	ENSGT00950000183005.b.a.f	ENSGT01000000214836	ENSGT00940000157036.e.b.b	ENSGT00940000153487.b.a.s.b.d	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a.a.b	ENSGT00940000164500.a.f	ENSGT00720000108823.j	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00950000182925.C.a.a.d	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000156523.b.d.d	ENSGT00940000157113.d.h	ENSGT00410000025695.a.d #22	ENSGT00940000158050.h.a.a	ENSGT00390000009230.b.e	ENSGT00510000049027.d	ENSGT01030000234567.B.a.a.b.b.a.a	ENSGT00940000163253.b.c.a.b.b	ENSGT00940000165622.i.a.b	ENSGT00390000007227.b.ab #17	ENSGT00390000000719.u.b #18	ENSGT00390000004097.a.f.c #20	ENSGT00390000012198.b.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.j #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b.m
Salmoninae_a	ANCESTRAL SPECIES	51	ENSGT00940000162613.h	ENSGT00950000183005.b.a.f	ENSGT01000000214836	ENSGT00940000157036.e.b.b	ENSGT00940000153487.b.a.s.b.d	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a.a.b	ENSGT00940000164500.a.f	ENSGT00720000108823.j	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000156523.b.d.d	ENSGT00940000157113.d.h	ENSGT00410000025695.a.d #22	ENSGT00940000158050.h.a.a	ENSGT00390000009230.b.e	ENSGT00510000049027.d	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00940000163253.b.c.a.b.b	ENSGT01030000234567.B.a.a.b.b.a.a.a	ENSGT00940000165622.i.a.b	ENSGT00390000007227.b.ab #17	ENSGT00390000000719.u.b #18	ENSGT00390000004097.a.f.c #20	ENSGT00390000012198.b.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.j #25	ENSGT00390000012913.a.a #23
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000162613.h	ENSGT00950000183005.b.a.f	ENSGT01000000214836	ENSGT00940000157036.e.b.b	ENSGT00940000153487.b.a.s.b.d	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a.a.b	ENSGT00940000164500.a.f	ENSGT00720000108823.j	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000156523.b.d.d	ENSGT00940000157113.d.h	ENSGT00410000025695.a.d #22	ENSGT00940000158050.h.a.a	ENSGT00390000009230.b.e	ENSGT00510000049027.d	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00940000163253.b.c.a.b.b	ENSGT01030000234567.B.a.a.b.b.a.a.a	ENSGT00940000165622.i.a.b	ENSGT00390000007227.b.ab #17	ENSGT00390000000719.u.b #18	ENSGT00390000004097.a.f.c #20	ENSGT00390000012198.b.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.j #25	ENSGT00390000012913.a.a #23
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000080413	QCR10 (ENSSSAG00000080419)	ENSSSAG00000114488	tcf3 (ENSSSAG00000080422)	map2k2b (ENSSSAG00000110636)	pias4b (ENSSSAG00000080484)	onecut3 (ENSSSAG00000080491)	ENSSSAG00000098495	ENSSSAG00000080494	sf3a2 (ENSSSAG00000080497)	plekhj1 (ENSSSAG00000087805)	ENSSSAG00000081269	ENSSSAG00000080517	ENSSSAG00000080520	ENSSSAG00000080530	ENSSSAG00000080535 #22	stk11 (ENSSSAG00000094770)	ENSSSAG00000085793	ENSSSAG00000080551	ENSSSAG00000119558	ENSSSAG00000080695	ENSSSAG00000080787	ENSSSAG00000080809	ENSSSAG00000080819	ENSSSAG00000080823 #17	ENSSSAG00000083741 #20	ENSSSAG00000080841 #21	armc6 (ENSSSAG00000080858) #32	ENSSSAG00000090529 #31	ENSSSAG00000119479	ENSSSAG00000004449 #25
River trout	MODERN SPECIES	13	MEX3D (ENSSTUG00000040434)	mbd3a (ENSSTUG00000040441)	ENSSTUG00000040487	tcf3a (ENSSTUG00000040504)	map2k2b (ENSSTUG00000040895)	pias4b (ENSSTUG00000041412)	ENSSTUG00000041450	ENSSTUG00000041459	sf3a2 (ENSSTUG00000041509)	plekhj1 (ENSSTUG00000041529)	fzr1a (ENSSTUG00000041577)	ENSSTUG00000042146	ENSSTUG00000042172	ENSSTUG00000042201	rnf126 (ENSSTUG00000042229)	ENSSTUG00000042288 #22	stk11 (ENSSTUG00000042429)	ENSSTUG00000042453	ENSSTUG00000042472	ENSSTUG00000042522	ENSSTUG00000042759	ENSSTUG00000043586	ENSSTUG00000043723	YJEFN3 (ENSSTUG00000043746) #17	NDUFA13 (ENSSTUG00000043802) #18	GATAD2A (ENSSTUG00000043827) #20	MAU2 (ENSSTUG00000043866) #21	ARMC6 (ENSSTUG00000043983) #32	SLC25A42 (ENSSTUG00000044005) #31	ENSSTUG00000044045 #25	tm6sf2a (ENSSTUG00000044061) #23
Oncorhynchus	ANCESTRAL SPECIES	46	ENSGT00940000162613.h	ENSGT00950000183005.b.a.f	ENSGT01000000214836	ENSGT00940000157036.e.b.b	ENSGT00940000153487.b.a.s.b.d	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a.a.b	ENSGT00940000164500.a.f	ENSGT00720000108823.j	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000156523.b.d.d	ENSGT00940000157113.d.h	ENSGT00410000025695.a.d #22	ENSGT00940000158050.h.a.a	ENSGT00390000009230.b.e	ENSGT00510000049027.d	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00940000163253.b.c.a.b.b	ENSGT01030000234567.B.a.a.b.b.a.a.a	ENSGT00940000165622.i.a.b	ENSGT00940000153524.c.f.b	ENSGT00390000007227.b.ab #17	ENSGT00390000000719.u.b #18	ENSGT00390000004097.a.f.c #20	ENSGT00390000012198.b.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.j #25
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000052459	UQCR11 (ENSOMYG00000019001)	tcf3a (ENSOMYG00000019014)	map2k2b (ENSOMYG00000019038)	pias4b (ENSOMYG00000019044)	ENSOMYG00000019049	ENSOMYG00000019056	ENSOMYG00000056264	sf3a2 (ENSOMYG00000019075)	plekhj1 (ENSOMYG00000019086)	ENSOMYG00000019145	ENSOMYG00000075756	ENSOMYG00000019717	ENSOMYG00000054246	ENSOMYG00000025305	ENSOMYG00000025369 #22	stk11 (ENSOMYG00000025490)	ENSOMYG00000025525	ENSOMYG00000025552	ENSOMYG00000065367	ENSOMYG00000025581	ENSOMYG00000025686	ENSOMYG00000025872	ENSOMYG00000025963	ENSOMYG00000065822	ENSOMYG00000072349	YJEFN3 (ENSOMYG00000025997) #17	nduad (ENSOMYG00000058070) #18	GATAD2A (ENSOMYG00000026026) #20	MAU2 (ENSOMYG00000026067) #21	ENSOMYG00000026114 #32
Oncorhynchus_a	ANCESTRAL SPECIES	56	ENSGT00940000162613.h	ENSGT00950000183005.b.a.f	ENSGT01000000214836	ENSGT00940000157036.e.b.b	ENSGT00940000153487.b.a.s.b.d	ENSGT01030000234539.a.a.a.e	ENSGT00950000183103.d.b.a.a.a.b	ENSGT00940000164500.a.f	ENSGT00720000108823.j	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a.b	ENSGT00940000162487.s.a	ENSGT00950000182925.C.a.a.c.b	ENSGT00940000156523.b.d.d	ENSGT00940000157113.d.h	ENSGT00410000025695.a.d #22	ENSGT00940000158050.h.a.a	ENSGT00390000009230.b.e	ENSGT00510000049027.d	ENSGT01030000234567.B.a.a.b.b.a.a.b	ENSGT00940000163253.b.c.a.b.b	ENSGT01030000234567.B.a.a.b.b.a.a.a	ENSGT00940000165622.i.a.b	ENSGT00940000153524.c.f.b	ENSGT00390000007227.b.ab #17	ENSGT00390000000719.u.b #18	ENSGT00390000004097.a.f.c #20	ENSGT00390000012198.b.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.j #25
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005015043	rorcb (ENSOTSG00005015045)	sh3gl1a (ENSOTSG00005015047)	sema4e (ENSOTSG00005015150)	cactin (ENSOTSG00005015153)	ENSOTSG00005015156	ENSOTSG00005015158	ENSOTSG00005015159	rpl14 (ENSOTSG00005015160)	sf3a2 (ENSOTSG00005015161)	plekhj1 (ENSOTSG00005015162)	fzr1a (ENSOTSG00005015163)	ENSOTSG00005015363	ENSOTSG00005015374	rnf126 (ENSOTSG00005015376)	SUGP1 (ENSOTSG00005015377) #22	stk11 (ENSOTSG00005015380)	ENSOTSG00005015382	ENSOTSG00005015383	ENSOTSG00005015385	ENSOTSG00005015399	ENSOTSG00005015412	ENSOTSG00005015639	YJEFN3 (ENSOTSG00005015641) #17	NDUFA13 (ENSOTSG00005015643) #18	ENSOTSG00005015646 #20	MAU2 (ENSOTSG00005015650) #21	ARMC6 (ENSOTSG00005015695) #32	SLC25A42 (ENSOTSG00005015696) #31	tm6sf2a (ENSOTSG00005015698) #23	ENSOTSG00005015699
Coho salmon	MODERN SPECIES	23	MEX3D (ENSOKIG00005050133)	mbd3a (ENSOKIG00005050135)	ENSOKIG00005050138	tcf3a (ENSOKIG00005050153)	map2k2b (ENSOKIG00005050173)	pias4b (ENSOKIG00005050185)	ENSOKIG00005050191	ENSOKIG00005050194	sf3a2 (ENSOKIG00005050196)	plekhj1 (ENSOKIG00005050200)	ENSOKIG00005050205	ENSOKIG00005050216	ENSOKIG00005050221	ENSOKIG00005050223	RNF126 (ENSOKIG00005050226)	SUGP1 (ENSOKIG00005050228) #22	stk11 (ENSOKIG00005050234)	ENSOKIG00005024194	ENSOKIG00005024199	ENSOKIG00005024217	ENSOKIG00005024320	ENSOKIG00005024598	ENSOKIG00005024876	NDUFA13 (ENSOKIG00005024891) #18	ENSOKIG00005024908 #20	MAU2 (ENSOKIG00005024928) #21	ARMC6 (ENSOKIG00005025081) #32	SLC25A42 (ENSOKIG00005025113) #31	ENSOKIG00005025211	ENSOKIG00005025248 #25	tm6sf2a (ENSOKIG00005025267) #23
Huchen	MODERN SPECIES	1767										sf3a2 (ENSHHUG00000050553)	plekhj1 (ENSHHUG00000050550)	fzr1a (ENSHHUG00000050508)	ENSHHUG00000050493	ENSHHUG00000050486	rnf126 (ENSHHUG00000050480)	ENSHHUG00000050474 #22
Northern pike	MODERN SPECIES	2	MEX3D (ENSELUG00000008214)	mbd3a (ENSELUG00000008232)	ENSELUG00000008293	ENSELUG00000029955	tcf3a (ENSELUG00000008346)	map2k2b (ENSELUG00000008388)	ENSELUG00000008421	ENSELUG00000000310	ENSELUG00000000313	sf3a2 (ENSELUG00000008471)	plekhj1 (ENSELUG00000008500)	fzr1a (ENSELUG00000008541)	ENSELUG00000008562	ENSELUG00000008591	rnf126 (ENSELUG00000008634)	SUGP1 (ENSELUG00000001358) #22	stk11 (ENSELUG00000008700)	ENSELUG00000008714	ENSELUG00000008730	ENSELUG00000009593	ENSELUG00000009851	cirbpa (ENSELUG00000009891)	ndufa13 (ENSELUG00000009943) #18	GATAD2A (ENSELUG00000009982) #20	MAU2 (ENSELUG00000010052) #21	ARMC6 (ENSELUG00000010104) #32	SLC25A42 (ENSELUG00000010136) #31	ENSELUG00000010199 #25	tm6sf2a (ENSELUG00000010244) #23	ENSELUG00000010302	PRKAB2 (ENSELUG00000010339)
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b
Tiger tail seahorse	MODERN SPECIES	488	ENSHCOG00000001336	ENSHCOG00000001325	ENSHCOG00000001302	MEX3D (ENSHCOG00000001289)	mbd3a (ENSHCOG00000001269)	ENSHCOG00000001266	tcf3a (ENSHCOG00000001261)	ENSHCOG00000001246	ONECUT3 (ENSHCOG00000001231)	ENSHCOG00000001227	sf3a2 (ENSHCOG00000001223)	plekhj1 (ENSHCOG00000001220)	fzr1a (ENSHCOG00000001211)	ENSHCOG00000001205	ENSHCOG00000001200	SUGP1 (ENSHCOG00000001195) #22	ENSHCOG00000001186	stk11 (ENSHCOG00000001184)	ENSHCOG00000001177	ENSHCOG00000001174	cirbpa (ENSHCOG00000001170)	NDUFA13 (ENSHCOG00000001161) #18	ENSHCOG00000001156 #20	ARMC6 (ENSHCOG00000001149) #32	SLC25A42 (ENSHCOG00000001141) #31	ENSHCOG00000001136 #25	tm6sf2a (ENSHCOG00000001130) #23	ENSHCOG00000001125	ENSHCOG00000001122	ENSHCOG00000001107	PRKAB2 (ENSHCOG00000001092)
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00940000154662.d	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Mangrove rivulus	MODERN SPECIES	64	tmem175 (ENSKMAG00000006844)	BTBD2 (ENSKMAG00000006816)	UNC13A (ENSKMAG00000006712)	MEX3D (ENSKMAG00000006645)	mbd3a (ENSKMAG00000006620)	ENSKMAG00000006582	tcf3a (ENSKMAG00000006477)	ONECUT3 (ENSKMAG00000006444)	ENSKMAG00000006347	sf3a2 (ENSKMAG00000006295)	plekhj1 (ENSKMAG00000006265)	fzr1a (ENSKMAG00000006208)	ENSKMAG00000006176	ENSKMAG00000006148	rnf126 (ENSKMAG00000006112)	SUGP1 (ENSKMAG00000006042) #22	stk11 (ENSKMAG00000005988)	ENSKMAG00000005955	ENSKMAG00000005936	cirbpa (ENSKMAG00000005905)	NDUFA13 (ENSKMAG00000005877) #18	ENSKMAG00000005852 #20	ARMC6 (ENSKMAG00000005828) #32	SLC25A42 (ENSKMAG00000005803) #31	ENSKMAG00000005755 #25	tm6sf2a (ENSKMAG00000005730) #23	ENSKMAG00000005722	ENSKMAG00000005672	PRKAB2 (ENSKMAG00000005628)	ENSKMAG00000005592	eeig2a (ENSKMAG00000005565)
Turquoise killifish	MODERN SPECIES	1618	Nfu_g_1_020180 (ENSNFUG00015024543)	ITGA6 (ENSNFUG00015024087)	METAP1D (ENSNFUG00015024020)	Nfu_g_1_020277 (ENSNFUG00015023672)	DYNC1I2B (ENSNFUG00015023167)	and3 (ENSNFUG00015023115)	pcyt1aa (ENSNFUG00015023112)	ap2m1a (ENSNFUG00015023105)	SF3A2 (ENSNFUG00015023101)	plekhj1 (ENSNFUG00015023100)	fzr1a (ENSNFUG00015023083)	ENSNFUG00015023078	Nfu_g_1_020323 (ENSNFUG00015023068)	HCN2 (ENSNFUG00015023047)	rnf126 (ENSNFUG00015023032)	SUGP1 (ENSNFUG00015023006) #22	stk11 (ENSNFUG00015022996)	C22H19ORF26 (ENSNFUG00015022993)	ENSNFUG00015022988	CIRBP (ENSNFUG00015022982)	NDUFA13 (ENSNFUG00015022975) #18	GATAD2A (ENSNFUG00015022969) #20	ARMC6 (ENSNFUG00015022963) #32	SLC25A42 (ENSNFUG00015022950) #31	ENSNFUG00015022933 #25	tm6sf2a (ENSNFUG00015022911) #23	ENSNFUG00015022904	ENSNFUG00015022854	PRKAB2 (ENSNFUG00015022831)	ENSNFUG00015022773	eeig2a (ENSNFUG00015022753)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00940000159284	ENSGT00940000164927.b
NAME_4	ANCESTRAL SPECIES	9	ENSGT00940000154662.d	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.b.a.b	ENSGT00390000001810.b	ENSGT00390000004708
Sheepshead minnow	MODERN SPECIES	486														ENSCVAG00000004688	rnf126 (ENSCVAG00000004709)	SUGP1 (ENSCVAG00000004765) #22	stk11 (ENSCVAG00000004816)	ENSCVAG00000004827	ENSCVAG00000004841	cirbpa (ENSCVAG00000004853)	NDUFA13 (ENSCVAG00000004870) #18	ENSCVAG00000004965 #20	ARMC6 (ENSCVAG00000004995) #32	SLC25A42 (ENSCVAG00000005020) #31	ENSCVAG00000000943 #25	tm6sf2a (ENSCVAG00000005061) #23	ENSCVAG00000005071	ENSCVAG00000005162	ENSCVAG00000005174	lyrm5a (ENSCVAG00000005184)	dnai7 (ENSCVAG00000005382)
Mummichog	MODERN SPECIES	2335	ENSFHEG00000002251	ENSFHEG00000002261	MEX3D (ENSFHEG00000002269)	mbd3a (ENSFHEG00000002278)	UQCR11 (ENSFHEG00000002286)	tcf3a (ENSFHEG00000002336)	ONECUT3 (ENSFHEG00000002369)	ENSFHEG00000002383	sf3a2 (ENSFHEG00000002392)	plekhj1 (ENSFHEG00000002406)	fzr1a (ENSFHEG00000002431)	ENSFHEG00000002436	ENSFHEG00000002513	ENSFHEG00000002533	rnf126 (ENSFHEG00000002544)	SUGP1 (ENSFHEG00000002556) #22	stk11 (ENSFHEG00000002568)	ENSFHEG00000002569	ENSFHEG00000002573	cirbpa (ENSFHEG00000002580)	NDUFA13 (ENSFHEG00000002587) #18	GATAD2A (ENSFHEG00000002594) #20	ARMC6 (ENSFHEG00000002612) #32	SLC25A42 (ENSFHEG00000002629) #31	ENSFHEG00000002640 #25	ENSFHEG00000002659 #25	tm6sf2a (ENSFHEG00000002667) #23	ENSFHEG00000002675	ENSFHEG00000002740	ENSFHEG00000002757	lyrm5a (ENSFHEG00000002767)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00940000159284	ENSGT00940000164927.b
Poecilia	ANCESTRAL SPECIES	16	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000157036.f	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
NAME_6	ANCESTRAL SPECIES	250						ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00770000121714
Sailfin molly	MODERN SPECIES	1933														ENSPLAG00000010896	rnf126 (ENSPLAG00000010930)	SUGP1 (ENSPLAG00000010995) #22	stk11 (ENSPLAG00000011024)	ENSPLAG00000011099	ENSPLAG00000011111	cirbpa (ENSPLAG00000011125)	NDUFA13 (ENSPLAG00000011134) #18	ENSPLAG00000011143 #20	ARMC6 (ENSPLAG00000011168) #32	SLC25A42 (ENSPLAG00000011190) #31
Amazon molly	MODERN SPECIES	604				mbd3a (ENSPFOG00000016030)	UQCR11 (ENSPFOG00000016025)	tcf3a (ENSPFOG00000015977)	ONECUT3 (ENSPFOG00000015971)	ENSPFOG00000015965	ENSPFOG00000015956	sf3a2 (ENSPFOG00000015945)	plekhj1 (ENSPFOG00000015943)	fzr1a (ENSPFOG00000015905)	ENSPFOG00000015888	ENSPFOG00000015842	rnf126 (ENSPFOG00000015821)	SUGP1 (ENSPFOG00000015785) #22	ENSPFOG00000015739	stk11 (ENSPFOG00000015730)	ENSPFOG00000015701	ENSPFOG00000015675	ENSPFOG00000015671	cirbpa (ENSPFOG00000015653)	NDUFA13 (ENSPFOG00000015652) #18	ENSPFOG00000015624 #20	ARMC6 (ENSPFOG00000015600) #32	SLC25A42 (ENSPFOG00000015563) #31	ENSPFOG00000022613	ENSPFOG00000015522 #25	tm6sf2a (ENSPFOG00000015479) #23	ENSPFOG00000022674	ENSPFOG00000022219
Guppy	MODERN SPECIES	447	BTBD2 (ENSPREG00000017668)	UNC13A (ENSPREG00000017708)	MEX3D (ENSPREG00000017736)	mbd3a (ENSPREG00000017747)	UQCR11 (ENSPREG00000017764)	ENSPREG00000017774	ONECUT3 (ENSPREG00000017782)	ENSPREG00000017796	sf3a2 (ENSPREG00000017808)	plekhj1 (ENSPREG00000017830)	fzr1a (ENSPREG00000017856)	ENSPREG00000017875	ENSPREG00000017889	ENSPREG00000017898	rnf126 (ENSPREG00000017938)	SUGP1 (ENSPREG00000017966) #22	stk11 (ENSPREG00000018001)	ENSPREG00000018014	cirbpa (ENSPREG00000018042)	NDUFA13 (ENSPREG00000018070) #18	ENSPREG00000018100 #20	ARMC6 (ENSPREG00000018119) #32	SLC25A42 (ENSPREG00000018140) #31	ENSPREG00000018172	ENSPREG00000018174	ENSPREG00000018193	pard3ab (ENSPREG00000018390)	NRP1 (ENSPREG00000018822)	ENSPREG00000019053	itgb1b (ENSPREG00000019071)	ENSPREG00000019158
Platyfish	MODERN SPECIES	20	ENSXMAG00000023280	eef2b (ENSXMAG00000019308)	BTBD2 (ENSXMAG00000019309)	UNC13A (ENSXMAG00000019310)	MEX3D (ENSXMAG00000025266)	mbd3a (ENSXMAG00000019312)	tcf3a (ENSXMAG00000019314)	ONECUT3 (ENSXMAG00000012192)	ENSXMAG00000019316	sf3a2 (ENSXMAG00000029068)	plekhj1 (ENSXMAG00000019320)	fzr1a (ENSXMAG00000019321)	ENSXMAG00000027603	ENSXMAG00000019326	rnf126 (ENSXMAG00000019329)	SUGP1 (ENSXMAG00000019331) #22	stk11 (ENSXMAG00000019332)	ENSXMAG00000023845	ENSXMAG00000019334	cirbpa (ENSXMAG00000019336)	NDUFA13 (ENSXMAG00000019337) #18	ENSXMAG00000019339 #20	ARMC6 (ENSXMAG00000019340) #32	SLC25A42 (ENSXMAG00000019341) #31	ENSXMAG00000022489 #25	tm6sf2a (ENSXMAG00000012807) #23	ENSXMAG00000025599	ENSXMAG00000025627	ENSXMAG00000025099	ENSXMAG00000029954	lyrm5a (ENSXMAG00000025461)
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000154662.d	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000154662.d	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Japanese Medaka HdrR	MODERN SPECIES	8	BTBD2 (ENSORLG00000015019)	UNC13A (ENSORLG00000015199)	MEX3D (ENSORLG00000015223)	mbd3a (ENSORLG00000015235)	UQCR11 (ENSORLG00000029127)	tcf3a (ENSORLG00000015259)	ONECUT3 (ENSORLG00000015269)	ENSORLG00000015283	sf3a2 (ENSORLG00000015301)	plekhj1 (ENSORLG00000015314)	fzr1a (ENSORLG00000015349)	spinc (ENSORLG00000015355)	ENSORLG00000027131	ENSORLG00000015383	rnf126 (ENSORLG00000015395)	SUGP1 (ENSORLG00000015411) #22	stk11 (ENSORLG00000015419)	ENSORLG00000022795	ENSORLG00000021934	cirbpa (ENSORLG00000015433)	NDUFA13 (ENSORLG00000015440) #18	ENSORLG00000015450 #20	ARMC6 (ENSORLG00000015463) #32	SLC25A42 (ENSORLG00000015475) #31	ENSORLG00000023585	ENSORLG00000015492 #25	tm6sf2a (ENSORLG00000015505) #23	ENSORLG00000029991	ENSORLG00000015537	PRKAB2 (ENSORLG00000015550)	ENSORLG00000015576
Chinese medaka	MODERN SPECIES	1097	eef2b (ENSOSIG00000020949)	BTBD2 (ENSOSIG00000021006)	UNC13A (ENSOSIG00000021103)	MEX3D (ENSOSIG00000022049)	mbd3a (ENSOSIG00000022058)	UQCR11 (ENSOSIG00000022060)	tcf3a (ENSOSIG00000022071)	ONECUT3 (ENSOSIG00000022074)	ENSOSIG00000022077	sf3a2 (ENSOSIG00000022078)	plekhj1 (ENSOSIG00000022081)	fzr1a (ENSOSIG00000022089)	ENSOSIG00000022142	ENSOSIG00000022148	rnf126 (ENSOSIG00000022173)	ENSOSIG00000022177 #22	stk11 (ENSOSIG00000022185)	ENSOSIG00000022190	cirbpa (ENSOSIG00000022200)	NDUFA13 (ENSOSIG00000022202) #18	ENSOSIG00000022205 #20	ARMC6 (ENSOSIG00000022208) #32	SLC25A42 (ENSOSIG00000022218) #31	ENSOSIG00000022249 #25	tm6sf2a (ENSOSIG00000022260) #23	ENSOSIG00000022263	ENSOSIG00000022268	PRKAB2 (ENSOSIG00000022272)	ENSOSIG00000022293	eeig2a (ENSOSIG00000022325)	ENSOSIG00000000804
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000154662.d	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g	ENSGT00730000111085.B	ENSGT00940000169454
Javanese ricefish	MODERN SPECIES	8	eef2b (ENSOJAG00000023898)	BTBD2 (ENSOJAG00000023906)	UNC13A (ENSOJAG00000023917)	MEX3D (ENSOJAG00000023936)	mbd3a (ENSOJAG00000023937)	UQCR11 (ENSOJAG00000023938)	tcf3a (ENSOJAG00000023940)	ONECUT3 (ENSOJAG00000023945)	ENSOJAG00000023946	sf3a2 (ENSOJAG00000023948)	plekhj1 (ENSOJAG00000023953)	fzr1a (ENSOJAG00000023957)	ENSOJAG00000023962	ENSOJAG00000023976	rnf126 (ENSOJAG00000023981)	SUGP1 (ENSOJAG00000023984) #22	stk11 (ENSOJAG00000023987)	ENSOJAG00000023988	ENSOJAG00000023990	cirbpa (ENSOJAG00000023991)	NDUFA13 (ENSOJAG00000023992) #18	ENSOJAG00000023993 #20	ARMC6 (ENSOJAG00000023996) #32	ENSOJAG00000024005 #25	tm6sf2a (ENSOJAG00000024008) #23	PRKAB2 (ENSOJAG00000024018)	ENSOJAG00000024021	eeig2a (ENSOJAG00000024033)	ENSOJAG00000024037	prpf38b (ENSOJAG00000024035)	FNDC7 (ENSOJAG00000024041)
Indian medaka	MODERN SPECIES	10	ENSOMEG00000020106	ENSOMEG00000020172	eef2b (ENSOMEG00000020260)	BTBD2 (ENSOMEG00000020308)	UNC13A (ENSOMEG00000020525)	MEX3D (ENSOMEG00000020682)	tcf3a (ENSOMEG00000020778)	ENSOMEG00000020816	ENSOMEG00000020828	sf3a2 (ENSOMEG00000020860)	plekhj1 (ENSOMEG00000020934)	fzr1a (ENSOMEG00000021007)	ENSOMEG00000021065	ENSOMEG00000021114	rnf126 (ENSOMEG00000021160)	SUGP1 (ENSOMEG00000021298) #22	stk11 (ENSOMEG00000021335)	ENSOMEG00000021392	ENSOMEG00000021422	cirbpa (ENSOMEG00000021469)	NDUFA13 (ENSOMEG00000021487) #18	ENSOMEG00000021514 #20	ARMC6 (ENSOMEG00000021531) #32	SLC25A42 (ENSOMEG00000021554) #31	ENSOMEG00000021633 #25	tm6sf2a (ENSOMEG00000021701) #23	ENSOMEG00000021725	ENSOMEG00000021771	ENSOMEG00000021795	PRKAB2 (ENSOMEG00000021827)	ENSOMEG00000021913
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00950000183190.a.a.a.a.a.b
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00940000159284
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00940000180150	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606
Amphiprion	ANCESTRAL SPECIES	48	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00940000180150	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606
Clown anemonefish	MODERN SPECIES	1295	UNC13A (ENSAOCG00000015504)	MEX3D (ENSAOCG00000015529)	mbd3a (ENSAOCG00000001075)	UQCR11 (ENSAOCG00000015556)	tcf3a (ENSAOCG00000015648)	map2k2b (ENSAOCG00000015707)	ENSAOCG00000015862	ENSAOCG00000015906	ENSAOCG00000015917	sf3a2 (ENSAOCG00000015960)	plekhj1 (ENSAOCG00000002709)	fzr1a (ENSAOCG00000016035)	ENSAOCG00000002542	ENSAOCG00000016074	rnf126 (ENSAOCG00000016106)	SUGP1 (ENSAOCG00000016128) #22	stk11 (ENSAOCG00000016166)	ENSAOCG00000016184	ENSAOCG00000016195	cirbpa (ENSAOCG00000016212)	NDUFA13 (ENSAOCG00000016234) #18	ENSAOCG00000016259 #20	MAU2 (ENSAOCG00000016336) #21	ARMC6 (ENSAOCG00000016390) #32	SLC25A42 (ENSAOCG00000016427) #31	ENSAOCG00000016459 #25
Orange clownfish	MODERN SPECIES	1	UNC13A (ENSAPEG00000012677)	MEX3D (ENSAPEG00000012520)	mbd3a (ENSAPEG00000012496)	UQCR11 (ENSAPEG00000012488)	tcf3a (ENSAPEG00000012450)	map2k2b (ENSAPEG00000012403)	ENSAPEG00000012394	ENSAPEG00000012371	ENSAPEG00000012351	sf3a2 (ENSAPEG00000012336)	plekhj1 (ENSAPEG00000012320)	fzr1a (ENSAPEG00000012263)	ENSAPEG00000012230	ENSAPEG00000012186	rnf126 (ENSAPEG00000012142)	SUGP1 (ENSAPEG00000012114) #22	stk11 (ENSAPEG00000012073)	ENSAPEG00000012060	ENSAPEG00000012024	cirbpa (ENSAPEG00000011989)	NDUFA13 (ENSAPEG00000011952) #18	ENSAPEG00000011933 #20	MAU2 (ENSAPEG00000011872) #21	ARMC6 (ENSAPEG00000011837) #32	SLC25A42 (ENSAPEG00000011803) #31	ENSAPEG00000011552 #25	tm6sf2a (ENSAPEG00000011334) #23	ENSAPEG00000011305	ENSAPEG00000011200	ENSAPEG00000011186	PRKAB2 (ENSAPEG00000011137)
Spiny chromis	MODERN SPECIES	298									sf3a2 (ENSAPOG00000003916)	plekhj1 (ENSAPOG00000003933)	fzr1a (ENSAPOG00000004009)	ENSAPOG00000004019	ENSAPOG00000004034	ENSAPOG00000004065	rnf126 (ENSAPOG00000004118)	SUGP1 (ENSAPOG00000004189) #22	stk11 (ENSAPOG00000004402)	ENSAPOG00000004420	ENSAPOG00000004429	cirbpa (ENSAPOG00000004458)	NDUFA13 (ENSAPOG00000004491) #18	GATAD2A (ENSAPOG00000004524) #20	MAU2 (ENSAPOG00000004632) #21	ARMC6 (ENSAPOG00000004711) #32	SLC25A42 (ENSAPOG00000004755) #31	ENSAPOG00000004816 #25	tm6sf2a (ENSAPOG00000004835) #23	ENSAPOG00000004854	ENSAPOG00000004871	ENSAPOG00000005032	ENSAPOG00000005080
Bicolor damselfish	MODERN SPECIES	500														ENSSPAG00000022985	rnf126 (ENSSPAG00000023003)	SUGP1 (ENSSPAG00000023010) #22	stk11 (ENSSPAG00000023023)	CBARP (ENSSPAG00000023030)	ENSSPAG00000023035	cirbpa (ENSSPAG00000023037)	NDUFA13 (ENSSPAG00000023039) #18	GATAD2A (ENSSPAG00000023043) #20	ENSSPAG00000023048	MAU2 (ENSSPAG00000023055) #21	ARMC6 (ENSSPAG00000023069) #32	SLC25A42 (ENSSPAG00000023080) #31	ENSSPAG00000023091 #25	ENSSPAG00000023096 #25	tm6sf2a (ENSSPAG00000023103) #23	ENSSPAG00000023108	ENSSPAG00000023117
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Midas cichlid	MODERN SPECIES	1217	UNC13A (ENSACIG00000017680)	MEX3D (ENSACIG00000017738)	mbd3a (ENSACIG00000017776)	UQCR11 (ENSACIG00000017911)	tcf3a (ENSACIG00000017917)	map2k2b (ENSACIG00000017944)	ENSACIG00000017976	ENSACIG00000018119	ENSACIG00000018134	sf3a2 (ENSACIG00000018153)	plekhj1 (ENSACIG00000018173)	FZR1 (ENSACIG00000018193)	ENSACIG00000018222	ENSACIG00000018262	rnf126 (ENSACIG00000018279)	SUGP1 (ENSACIG00000018294) #22	stk11 (ENSACIG00000018328)	ENSACIG00000018437
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d.e	ENSGT00940000157113.d.f	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Nile tilapia	MODERN SPECIES	9	UNC13A (ENSONIG00000010221)	MEX3D (ENSONIG00000028717)	mbd3a (ENSONIG00000010217)	UQCR11 (ENSONIG00000041241)	tcf3a (ENSONIG00000010206)	map2k2b (ENSONIG00000010201)	ENSONIG00000010200	ENSONIG00000039080	ENSONIG00000010199	sf3a2 (ENSONIG00000027140)	plekhj1 (ENSONIG00000035519)	fzr1a (ENSONIG00000010194)	ENSONIG00000010190	ENSONIG00000010188	rnf126 (ENSONIG00000010181)	SUGP1 (ENSONIG00000010178) #22	stk11 (ENSONIG00000010176)	ENSONIG00000010173	ENSONIG00000010171	cirbpa (ENSONIG00000010169)	NDUFA13 (ENSONIG00000010166) #18	ENSONIG00000038228	ENSONIG00000010164 #20	MAU2 (ENSONIG00000010160) #21	ARMC6 (ENSONIG00000010159) #32	SLC25A42 (ENSONIG00000010158) #31	ENSONIG00000030949	ENSONIG00000010153 #25	tm6sf2a (ENSONIG00000010150) #23	ENSONIG00000010139	PRKAB2 (ENSONIG00000010137)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d.e	ENSGT00940000157113.d.f	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Lyretail cichlid	MODERN SPECIES	300	UNC13A (ENSNBRG00000020104)	MEX3D (ENSNBRG00000020089)	mbd3a (ENSNBRG00000020027)	UQCR11 (ENSNBRG00000020012)	tcf3a (ENSNBRG00000019974)	map2k2b (ENSNBRG00000019941)	ENSNBRG00000019917	ENSNBRG00000019904	sf3a2 (ENSNBRG00000019872)	plekhj1 (ENSNBRG00000019862)	fzr1a (ENSNBRG00000019842)	ENSNBRG00000019812	ENSNBRG00000019794	rnf126 (ENSNBRG00000019784)	ENSNBRG00000019774	ENSNBRG00000019759 #22	stk11 (ENSNBRG00000019738)	ENSNBRG00000019709	ENSNBRG00000019693	cirbpa (ENSNBRG00000019658)	NDUFA13 (ENSNBRG00000019643) #18	GATAD2A (ENSNBRG00000019611) #20	MAU2 (ENSNBRG00000019564) #21	ARMC6 (ENSNBRG00000019517) #32	SLC25A42 (ENSNBRG00000019458) #31	ENSNBRG00000019423 #25	ENSNBRG00000019397 #25	tm6sf2a (ENSNBRG00000019383) #23	ENSNBRG00000019372	ENSNBRG00000019352	ENSNBRG00000019338
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d.e	ENSGT00940000157113.d.f	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Burton s mouthbrooder	MODERN SPECIES	306	UNC13A (ENSHBUG00000021558)	MEX3D (ENSHBUG00000021600)	mbd3a (ENSHBUG00000021612)	UQCR11 (ENSHBUG00000021625)	tcf3a (ENSHBUG00000021717)	map2k2b (ENSHBUG00000021744)	ENSHBUG00000021754	ENSHBUG00000021775	ENSHBUG00000021785	sf3a2 (ENSHBUG00000021796)	plekhj1 (ENSHBUG00000021808)	fzr1a (ENSHBUG00000021847)	ENSHBUG00000021888	ENSHBUG00000021923	rnf126 (ENSHBUG00000021965)	SUGP1 (ENSHBUG00000022000) #22	stk11 (ENSHBUG00000022038)	ENSHBUG00000022044	ENSHBUG00000022050	cirbpa (ENSHBUG00000022060)	NDUFA13 (ENSHBUG00000022075) #18	GATAD2A (ENSHBUG00000022153) #20	MAU2 (ENSHBUG00000001179) #21	ARMC6 (ENSHBUG00000022237) #32	SLC25A42 (ENSHBUG00000022280) #31	ENSHBUG00000022299 #25	tm6sf2a (ENSHBUG00000022363) #23	ENSHBUG00000022373	ENSHBUG00000022408	ENSHBUG00000022430	PRKAB2 (ENSHBUG00000022443)
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d.e	ENSGT00940000157113.d.f	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
P. nyererei	MODERN SPECIES	299	MEX3D (ENSPNYG00000006622)	mbd3a (ENSPNYG00000006645)	UQCR11 (ENSPNYG00000006711)	tcf3a (ENSPNYG00000006730)	map2k2b (ENSPNYG00000006796)	ENSPNYG00000006841	ENSPNYG00000006893	ENSPNYG00000006911	sf3a2 (ENSPNYG00000006928)	plekhj1 (ENSPNYG00000006936)	fzr1a (ENSPNYG00000006958)	ENSPNYG00000007001	ENSPNYG00000007014	rnf126 (ENSPNYG00000007041)	ENSPNYG00000007047	ENSPNYG00000007066 #22	stk11 (ENSPNYG00000007076)	ENSPNYG00000007161	ENSPNYG00000007184	ENSPNYG00000007198	NDUFA13 (ENSPNYG00000007213) #18	ENSPNYG00000007222 #20	MAU2 (ENSPNYG00000007240) #21	ARMC6 (ENSPNYG00000007304) #32	SLC25A42 (ENSPNYG00000007327) #31	ENSPNYG00000007386 #25	ENSPNYG00000007405 #25	tm6sf2a (ENSPNYG00000007438) #23	ENSPNYG00000007452	ENSPNYG00000007470	PRKAB2 (ENSPNYG00000007553)
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d.e	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b.f #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284	ENSGT00940000164927.b
Zebra mbuna	MODERN SPECIES	1100	UNC13A (ENSMZEG00005025629)	MEX3D (ENSMZEG00005025626)	mbd3a (ENSMZEG00005025624)	UQCR11 (ENSMZEG00005025623)	tcf3a (ENSMZEG00005025622)	map2k2b (ENSMZEG00005025620)	ENSMZEG00005025613	ENSMZEG00005025611	ENSMZEG00005025610	sf3a2 (ENSMZEG00005025609)	plekhj1 (ENSMZEG00005025608)	fzr1a (ENSMZEG00005025605)	ENSMZEG00005025600	ENSMZEG00005025597	rnf126 (ENSMZEG00005025594)	SUGP1 (ENSMZEG00005025588) #22	stk11 (ENSMZEG00005025586)	ENSMZEG00005025583	ENSMZEG00005025580	ENSMZEG00005025577	NDUFA13 (ENSMZEG00005025576) #18	ENSMZEG00005025575 #20	MAU2 (ENSMZEG00005025570) #21	ARMC6 (ENSMZEG00005025567) #32	SLC25A42 (ENSMZEG00005025562) #31	ENSMZEG00005025554 #25	tm6sf2a (ENSMZEG00005025551) #23	ENSMZEG00005025549	ENSMZEG00005025548	ENSMZEG00005025546	PRKAB2 (ENSMZEG00005025544)
Eastern happy	MODERN SPECIES	9	UNC13A (ENSACLG00000002861)	MEX3D (ENSACLG00000002826)	mbd3a (ENSACLG00000002716)	UQCR11 (ENSACLG00000002686)	tcf3a (ENSACLG00000002577)	map2k2b (ENSACLG00000002553)	ENSACLG00000002545	ENSACLG00000002533	ENSACLG00000002528	sf3a2 (ENSACLG00000002356)	plekhj1 (ENSACLG00000002336)	fzr1a (ENSACLG00000002289)	ENSACLG00000002268	ENSACLG00000002245	rnf126 (ENSACLG00000002225)	SUGP1 (ENSACLG00000002221) #22	stk11 (ENSACLG00000002194)	ENSACLG00000002139	ENSACLG00000002119	ENSACLG00000002094	NDUFA13 (ENSACLG00000002082) #18	ENSACLG00000002069 #20	MAU2 (ENSACLG00000002022) #21	ARMC6 (ENSACLG00000001997) #32	SLC25A42 (ENSACLG00000001966) #31	ENSACLG00000001902 #25	tm6sf2a (ENSACLG00000001874) #23	ENSACLG00000001860	ENSACLG00000001845	ENSACLG00000001825	ENSACLG00000001819
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.f	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b	ENSGT00950000183190.a.a.a.a.a.b
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000163251.b.c	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00410000028808	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.f	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00950000183190.a.a.b.c.a	ENSGT00950000183190.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b
Fugu	MODERN SPECIES	14	MEX3D (ENSTRUG00000007986)	mbd3a (ENSTRUG00000008081)	ENSTRUG00000025231	tcf3a (ENSTRUG00000008147)	ENSTRUG00000032499	ENSTRUG00000030348	ENSTRUG00000008600	ONECUT3 (ENSTRUG00000008911)	ENSTRUG00000008968	sf3a2 (ENSTRUG00000009045)	plekhj1 (ENSTRUG00000024234)	fzr1a (ENSTRUG00000009166)	ENSTRUG00000025344	ENSTRUG00000009472	rnf126 (ENSTRUG00000009560)	SUGP1 (ENSTRUG00000009724) #22	stk11 (ENSTRUG00000009891)	ENSTRUG00000010019	ENSTRUG00000010069	cirbp (ENSTRUG00000010187)	NDUFA13 (ENSTRUG00000031395) #18	ENSTRUG00000010208 #20	ARMC6 (ENSTRUG00000010295) #32	SLC25A42 (ENSTRUG00000010352) #31	ENSTRUG00000010430 #25	tm6sf2a (ENSTRUG00000010612) #23	ENSTRUG00000023574	ENSTRUG00000029868	ENSTRUG00000010846	PRKAB2 (ENSTRUG00000023478)	ENSTRUG00000011259
Tetraodon	MODERN SPECIES	6	UNC13A (ENSTNIG00000015326)	MEX3D (ENSTNIG00000015325)	mbd3a (ENSTNIG00000015324)	ENSTNIG00000015323	tcf3a (ENSTNIG00000015322)	ENSTNIG00000015321	ONECUT3 (ENSTNIG00000015320)	ENSTNIG00000015319	ENSTNIG00000000208	sf3a2 (ENSTNIG00000015318)	plekhj1 (ENSTNIG00000015317)	fzr1a (ENSTNIG00000015316)	ENSTNIG00000015315	ENSTNIG00000015314	rnf126 (ENSTNIG00000015313)	SUGP1 (ENSTNIG00000015312) #22	stk11 (ENSTNIG00000015311)	CBARP (ENSTNIG00000015310)	cirbpa (ENSTNIG00000000450)	NDUFA13 (ENSTNIG00000015309) #18	GATAD2A (ENSTNIG00000015308) #20	ARMC6 (ENSTNIG00000015307) #32	SLC25A42 (ENSTNIG00000015306) #31	ENSTNIG00000015305 #25	tm6sf2a (ENSTNIG00000015304) #23	ENSTNIG00000015303	PRKAB2 (ENSTNIG00000015302)	ENSTNIG00000015301	eeig2a (ENSTNIG00000015300)	ENSTNIG00000015299	FNDC7 (ENSTNIG00000015298)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.f	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000159284
Ballan wrasse	MODERN SPECIES	63	MEX3D (ENSLBEG00000000974)	mbd3a (ENSLBEG00000000961)	ENSLBEG00000000943	tcf3a (ENSLBEG00000000838)	map2k2b (ENSLBEG00000000771)	ENSLBEG00000000761	ENSLBEG00000000750	ENSLBEG00000000734	ENSLBEG00000000719	sf3a2 (ENSLBEG00000000677)	plekhj1 (ENSLBEG00000000642)	fzr1a (ENSLBEG00000000585)	ENSLBEG00000000513	ENSLBEG00000000459	rnf126 (ENSLBEG00000000394)	SUGP1 (ENSLBEG00000000335) #22	stk11 (ENSLBEG00000000328)	ENSLBEG00000000323	ENSLBEG00000000316	cirbpa (ENSLBEG00000000292)	NDUFA13 (ENSLBEG00000000263) #18	GATAD2A (ENSLBEG00000025177) #20	ARMC6 (ENSLBEG00000025147) #32	SLC25A42 (ENSLBEG00000025113) #31	ENSLBEG00000025058 #25	ENSLBEG00000025028 #25	tm6sf2a (ENSLBEG00000024990) #23	ENSLBEG00000024955	ENSLBEG00000024763	PRKAB2 (ENSLBEG00000024664)	ENSLBEG00000024625
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.e	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.e.a.a	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.e.b	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Pike perch	MODERN SPECIES	55	UNC13A (ENSSLUG00000004076)	MEX3D (ENSSLUG00000003737)	mbd3a (ENSSLUG00000003717)	ENSSLUG00000003703	tcf3a (ENSSLUG00000003689)	map2k2b (ENSSLUG00000003610)	ENSSLUG00000003577	ENSSLUG00000003505	ENSSLUG00000003493	sf3a2 (ENSSLUG00000003480)	plekhj1 (ENSSLUG00000003469)	fzr1a (ENSSLUG00000002951)	ENSSLUG00000002883	ENSSLUG00000002863	rnf126 (ENSSLUG00000002851)	SUGP1 (ENSSLUG00000002833) #22	stk11 (ENSSLUG00000002824)	ENSSLUG00000002816	ENSSLUG00000002806	ENSSLUG00000002796	NDUFA13 (ENSSLUG00000002790) #18	ENSSLUG00000002750 #20	MAU2 (ENSSLUG00000002586) #21	ARMC6 (ENSSLUG00000002542) #32	SLC25A42 (ENSSLUG00000002534) #31	ENSSLUG00000002517 #25	tm6sf2a (ENSSLUG00000002494) #23	ENSSLUG00000002486	ENSSLUG00000002482	PRKAB2 (ENSSLUG00000002467)	ENSSLUG00000002365
Channel bull blenny	MODERN SPECIES	8	UNC13A (ENSCGOG00000013383)	MEX3D (ENSCGOG00000013329)	mbd3a (ENSCGOG00000013327)	ENSCGOG00000013325	tcf3a (ENSCGOG00000013317)	map2k2b (ENSCGOG00000012380)	ENSCGOG00000012348	ENSCGOG00000012345	ENSCGOG00000012340	sf3a2 (ENSCGOG00000012305)	plekhj1 (ENSCGOG00000012289)	fzr1a (ENSCGOG00000011798)	ENSCGOG00000011788	ENSCGOG00000011782	rnf126 (ENSCGOG00000011710)	SUGP1 (ENSCGOG00000011646) #22	stk11 (ENSCGOG00000011588)	ENSCGOG00000011587	ENSCGOG00000011585	cirbpa (ENSCGOG00000011580)	NDUFA13 (ENSCGOG00000011572) #18	ENSCGOG00000011569 #20	ARMC6 (ENSCGOG00000011565) #32	SLC25A42 (ENSCGOG00000011556) #31	ENSCGOG00000011544 #25	tm6sf2a (ENSCGOG00000011535) #23	ENSCGOG00000011532	ENSCGOG00000011528	ENSCGOG00000011527	PRKAB2 (ENSCGOG00000011491)	ENSCGOG00000010953
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000154929.C	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.e.a.a	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g	ENSGT00730000111085.B
Lumpfish	MODERN SPECIES	8	ENSCLMG00005007135	UNC13A (ENSCLMG00005007134)	MEX3D (ENSCLMG00005007132)	mbd3a (ENSCLMG00005007131)	ENSCLMG00005007130	tcf3a (ENSCLMG00005007129)	map2k2b (ENSCLMG00005006730)	ONECUT3 (ENSCLMG00005006726)	ENSCLMG00005006724	sf3a2 (ENSCLMG00005006722)	plekhj1 (ENSCLMG00005006721)	ENSCLMG00005006444	ENSCLMG00005006443	ENSCLMG00005006441	RNF126 (ENSCLMG00005006440)	SUGP1 (ENSCLMG00005006439) #22	stk11 (ENSCLMG00005006438)	CBARP (ENSCLMG00005006437)	ENSCLMG00005006436	ENSCLMG00005006435	NDUFA13 (ENSCLMG00005006434) #18	ENSCLMG00005006433 #20	ARMC6 (ENSCLMG00005006432) #32	SLC25A42 (ENSCLMG00005006431) #31	ENSCLMG00005006428 #25	tm6sf2a (ENSCLMG00005006427) #23	ENSCLMG00005006425	ENSCLMG00005006424	PRKAB2 (ENSCLMG00005006423)	ENSCLMG00005006402	eeig2a (ENSCLMG00005006397)
Stickleback	MODERN SPECIES	2	UNC13A (ENSGACG00000015301)	MEX3D (ENSGACG00000015299)	mbd3a (ENSGACG00000015296)	tcf3a (ENSGACG00000015282)	map2k2b (ENSGACG00000015273)	ONECUT3 (ENSGACG00000015272)	ENSGACG00000015271	zp3f.1 (ENSGACG00000015267)	ENSGACG00000015265	sf3a2 (ENSGACG00000015255)	plekhj1 (ENSGACG00000015244)	fzr1a (ENSGACG00000015236)	ENSGACG00000015231	ENSGACG00000015230	rnf126 (ENSGACG00000015225)	SUGP1 (ENSGACG00000015222) #22	stk11 (ENSGACG00000015219)	ENSGACG00000015211	cirbpa (ENSGACG00000015206)	NDUFA13 (ENSGACG00000015203) #18	GATAD2A (ENSGACG00000015199) #20	ARMC6 (ENSGACG00000015191) #32	SLC25A42 (ENSGACG00000015189) #31	ENSGACG00000015182 #25	tm6sf2a (ENSGACG00000015175) #23	ENSGACG00000015171	ENSGACG00000015168	PRKAB2 (ENSGACG00000015165)	ENSGACG00000015163	eeig2a (ENSGACG00000015158)	prpf38b (ENSGACG00000015154)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.f	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622.f	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
European seabass	MODERN SPECIES		ENSDLAG00005029144	eef2b (ENSDLAG00005022862)	ENSDLAG00005022958	ENSDLAG00005023147	ENSDLAG00005027551	tcf3a (ENSDLAG00005027974)	map2k2b (ENSDLAG00005024852)	ENSDLAG00005024878	ENSDLAG00005024879	ENSDLAG00005024881	sf3a2 (ENSDLAG00005024886)	ENSDLAG00005024891	ENSDLAG00005024905	ENSDLAG00005024908	ENSDLAG00005024934	ENSDLAG00005024937 #22	ENSDLAG00005033484	ENSDLAG00005024964	ENSDLAG00005030125	NDUFA13 (ENSDLAG00005026360) #18	ENSDLAG00005024979 #20	MAU2 (ENSDLAG00005025001) #21	ENSDLAG00005025106 #32	ENSDLAG00005025115 #25	ENSDLAG00005034749 #23	ENSDLAG00005025119	ENSDLAG00005031899	eeig2a (ENSDLAG00005025216)	prpf38b (ENSDLAG00005025221)	ENSDLAG00005000160	ENSDLAG00005025227
Large yellow croaker	MODERN SPECIES	483	UNC13A (ENSLCRG00005003340)	MEX3D (ENSLCRG00005003238)	mbd3a (ENSLCRG00005003234)	UQCR11 (ENSLCRG00005003231)	ENSLCRG00005003230	tcf3a (ENSLCRG00005003208)	map2k2b (ENSLCRG00005002947)	ONECUT3 (ENSLCRG00005002937)	ENSLCRG00005002935	sf3a2 (ENSLCRG00005002933)	plekhj1 (ENSLCRG00005002930)	fzr1a (ENSLCRG00005002589)	ENSLCRG00005006138	ENSLCRG00005006049	ENSLCRG00005006038	SUGP1 (ENSLCRG00005006036) #22	stk11 (ENSLCRG00005006034)	ENSLCRG00005006032	ENSLCRG00005006026	cirbpa (ENSLCRG00005006025)	NDUFA13 (ENSLCRG00005006023) #18	ENSLCRG00005006021 #20	MAU2 (ENSLCRG00005006019) #21	ARMC6 (ENSLCRG00005006018) #32	SLC25A42 (ENSLCRG00005006016) #31	ENSLCRG00005006013 #25	tm6sf2a (ENSLCRG00005006010) #23	ENSLCRG00005006008	PRKAB2 (ENSLCRG00005006005)	ENSLCRG00005005985	eeig2a (ENSLCRG00005005979)
Gilthead seabream	MODERN SPECIES	13	UQCR11-B (ENSSAUG00010018172)	tcf3a (ENSSAUG00010018157)	map2k2b (ENSSAUG00010018128)	ENSSAUG00010018118	ENSSAUG00010018114	ENSSAUG00010018110	ENSSAUG00010018106	ENSSAUG00010018105	ENSSAUG00010018101	sf3a2 (ENSSAUG00010018096)	plekhj1 (ENSSAUG00010018092)	fzr1a (ENSSAUG00010017865)	ENSSAUG00010017855	ENSSAUG00010017804	rnf126 (ENSSAUG00010017802)	SUGP1 (ENSSAUG00010017796) #22	stk11 (ENSSAUG00010017794)	ENSSAUG00010017793	ENSSAUG00010017792	cirbpa (ENSSAUG00010017789)	NDUFA13 (ENSSAUG00010017787) #18	ENSSAUG00010017786 #20	MAU2 (ENSSAUG00010017124) #21	ARMC6 (ENSSAUG00010017108) #32	SLC25A42 (ENSSAUG00010017105) #31	ENSSAUG00010017099 #25	tm6sf2a (ENSSAUG00010017095) #23	ENSSAUG00010017087	PRKAB2 (ENSSAUG00010017078)	ENSSAUG00010017028	eeig2a (ENSSAUG00010017023)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00950000183190.a.a.a.a.a.b
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Zig-zag eel	MODERN SPECIES	8	eef2b (ENSMAMG00000009410)	ENSMAMG00000009448	ENSMAMG00000009493	MEX3D (ENSMAMG00000009575)	mbd3a (ENSMAMG00000009631)	ENSMAMG00000009650	tcf3a (ENSMAMG00000009676)	map2k2b (ENSMAMG00000009747)	ONECUT3 (ENSMAMG00000009776)	ENSMAMG00000009806	sf3a2 (ENSMAMG00000009881)	ENSMAMG00000009897	ENSMAMG00000009939	ENSMAMG00000009954	ENSMAMG00000009996	ENSMAMG00000010022 #22	ENSMAMG00000010087	ENSMAMG00000010112	ENSMAMG00000010150	ENSMAMG00000010168	NDUFA13 (ENSMAMG00000010191) #18	ENSMAMG00000010196 #20	MAU2 (ENSMAMG00000010226) #21	ENSMAMG00000010309 #32	ENSMAMG00000025704 #31	ENSMAMG00000010386 #25	ENSMAMG00000010423 #23	ENSMAMG00000010517	ENSMAMG00000010535	ENSMAMG00000010575	ENSMAMG00000010596
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000159179.g	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Climbing perch	MODERN SPECIES	8	ENSATEG00000015797	ENSATEG00000015705	MEX3D (ENSATEG00000015620)	mbd3a (ENSATEG00000015604)	UQCR11 (ENSATEG00000029685)	tcf3a (ENSATEG00000015526)	map2k2b (ENSATEG00000015486)	ONECUT3 (ENSATEG00000015466)	ENSATEG00000015455	sf3a2 (ENSATEG00000015449)	plekhj1 (ENSATEG00000015419)	ENSATEG00000015362	ENSATEG00000015349	ENSATEG00000015205	ENSATEG00000015159	ENSATEG00000015089 #22	ENSATEG00000015056	ENSATEG00000027548	ENSATEG00000015018	ENSATEG00000026515	NDUFA13 (ENSATEG00000014957) #18	ENSATEG00000014918 #20	MAU2 (ENSATEG00000014807) #21	ENSATEG00000014769 #32	ENSATEG00000014746 #31	ENSATEG00000014719 #25	ENSATEG00000027036	ENSATEG00000014645 #23	ENSATEG00000014584	ENSATEG00000014553	ENSATEG00000014532
Siamese fighting fish	MODERN SPECIES	8	BTBD2 (ENSBSLG00000011004)	UNC13A (ENSBSLG00000007074)	MEX3D (ENSBSLG00000005827)	mbd3a (ENSBSLG00000005818)	UQCR11 (ENSBSLG00000005816)	tcf3a (ENSBSLG00000005655)	map2k2b (ENSBSLG00000004962)	ONECUT3 (ENSBSLG00000025676)	ENSBSLG00000025674	sf3a2 (ENSBSLG00000025671)	plekhj1 (ENSBSLG00000025663)	fzr1a (ENSBSLG00000025629)	ENSBSLG00000025614	ENSBSLG00000025594	rnf126 (ENSBSLG00000025588)	SUGP1 (ENSBSLG00000025481) #22	stk11 (ENSBSLG00000025416)	ENSBSLG00000025402	ENSBSLG00000025384	dpydb (ENSBSLG00000024910)	odr4 (ENSBSLG00000024872)	prg4a (ENSBSLG00000024773)	dusp12 (ENSBSLG00000024754)	OLFML2B (ENSBSLG00000024746)	ENSBSLG00000024739	ENSBSLG00000024731	kifap3b (ENSBSLG00000024251)	zgc:171772 (ENSBSLG00000024214)	CFAP410 (ENSBSLG00000024207)	ENSBSLG00000024076	zgc:162816 (ENSBSLG00000024069)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00950000183190.a.a.a.a.a.b
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00950000183190.a.a.a.a.a.b
Seriola	ANCESTRAL SPECIES		ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT01000000214836	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT01100000263594.a	ENSGT00950000183190.a.a.b.c.a	ENSGT00940000177606	ENSGT00950000183190.a.a.a.a.a.b
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2574		MEX3D (ENSSLDG00000010251)	mbd3a (ENSSLDG00000010277)	ENSSLDG00000010298	tcf3a (ENSSLDG00000010354)	map2k2b (ENSSLDG00000010536)	ENSSLDG00000010623	ENSSLDG00000010824	ENSSLDG00000010855	sf3a2 (ENSSLDG00000010874)	plekhj1 (ENSSLDG00000010898)	fzr1a (ENSSLDG00000010925)	ENSSLDG00000010978	ENSSLDG00000011003	rnf126 (ENSSLDG00000011057)	SUGP1 (ENSSLDG00000011109) #22	stk11 (ENSSLDG00000011238)	ENSSLDG00000011275	ENSSLDG00000011306	cirbpa (ENSSLDG00000011320)	NDUFA13 (ENSSLDG00000011337) #18	GATAD2A (ENSSLDG00000011359) #20	MAU2 (ENSSLDG00000011410) #21	ARMC6 (ENSSLDG00000011492) #32	SLC25A42 (ENSSLDG00000011529) #31
Yellowtail amberjack	MODERN SPECIES	994																ENSSLDG00000000469 #22
Greater amberjack	MODERN SPECIES	83	UNC13A (ENSSDUG00000015480)	MEX3D (ENSSDUG00000015559)	mbd3a (ENSSDUG00000015576)	ENSSDUG00000015612	tcf3a (ENSSDUG00000015626)	map2k2b (ENSSDUG00000015722)	ENSSDUG00000015751	ENSSDUG00000015775	ENSSDUG00000015791	sf3a2 (ENSSDUG00000015810)	plekhj1 (ENSSDUG00000015836)	fzr1a (ENSSDUG00000015856)	ENSSDUG00000015903	ENSSDUG00000015921	rnf126 (ENSSDUG00000015961)	SUGP1 (ENSSDUG00000016002) #22	stk11 (ENSSDUG00000016044)	ENSSDUG00000016066	ENSSDUG00000016081	cirbpa (ENSSDUG00000016099)	NDUFA13 (ENSSDUG00000016119) #18	ENSSDUG00000016139 #20	MAU2 (ENSSDUG00000016192) #21	ARMC6 (ENSSDUG00000016271) #32	SLC25A42 (ENSSDUG00000016297) #31	ENSSDUG00000016331 #25	tm6sf2a (ENSSDUG00000016368) #23	ENSSDUG00000016383	ENSSDUG00000016399	ENSSDUG00000016490	PRKAB2 (ENSSDUG00000016500)
Barramundi perch	MODERN SPECIES	69	UNC13A (ENSLCAG00010016701)	MEX3D (ENSLCAG00010016541)	mbd3a (ENSLCAG00010016536)	ENSLCAG00010016533	tcf3a (ENSLCAG00010016519)	map2k2b (ENSLCAG00010016500)	ENSLCAG00010016490	ENSLCAG00010016486	ENSLCAG00010016483	sf3a2 (ENSLCAG00010016478)	plekhj1 (ENSLCAG00010016474)	fzr1a (ENSLCAG00010016290)	ENSLCAG00010016262	ENSLCAG00010016259	rnf126 (ENSLCAG00010016255)	SUGP1 (ENSLCAG00010016250) #22	stk11 (ENSLCAG00010016248)	ENSLCAG00010016246	ENSLCAG00010016241	cirbpa (ENSLCAG00010016235)	NDUFA13 (ENSLCAG00010016224) #18	GATAD2A (ENSLCAG00010016218) #20	ENSLCAG00010016216	MAU2 (ENSLCAG00010016175) #21	ARMC6 (ENSLCAG00010016141) #32	SLC25A42 (ENSLCAG00010016133) #31	ENSLCAG00010016074 #25	tm6sf2a (ENSLCAG00010016045) #23	ENSLCAG00010016017	PRKAB2 (ENSLCAG00010016009)	ENSLCAG00010016001
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000161905.b	ENSGT00940000162613	ENSGT00950000183005.b.a	ENSGT00390000018299	ENSGT00940000157036.e.b	ENSGT00940000153487.b.a.s.b	ENSGT00940000163251.b	ENSGT00950000183103.d.b.a.a	ENSGT00940000164500.a	ENSGT00720000108823	ENSGT00390000005235	ENSGT00950000183104.B.a.b.a.a	ENSGT00950000182925.C.a.a	ENSGT00940000156523.b.d	ENSGT00940000157113.d	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00510000049027.d	ENSGT00940000165622	ENSGT00390000000719 #18	ENSGT00390000004097.a.f #20	ENSGT00390000012198.b.a #21	ENSGT00390000002913 #32	ENSGT00940000158163.b #31	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00950000183190.a.a.a.a.a.b	ENSGT00940000159284	ENSGT00940000164927.b	ENSGT00940000156132.g
Turbot	MODERN SPECIES	19	ENSSMAG00000003277	ENSSMAG00000003126	MEX3D (ENSSMAG00000003087)	mbd3a (ENSSMAG00000003031)	UQCR11 (ENSSMAG00000003012)	tcf3a (ENSSMAG00000002954)	map2k2b (ENSSMAG00000002878)	ENSSMAG00000002680	ENSSMAG00000002648	ENSSMAG00000002644	sf3a2 (ENSSMAG00000027073)	ENSSMAG00000002573	ENSSMAG00000031477	ENSSMAG00000002539	ENSSMAG00000002519	ENSSMAG00000002495 #22	ENSSMAG00000002464	ENSSMAG00000002450	ENSSMAG00000002439	ENSSMAG00000002412	ENSSMAG00000002373 #18	ENSSMAG00000002301 #20	ENSSMAG00000002268 #32	ENSSMAG00000034798 #31	ENSSMAG00000002220 #25	ENSSMAG00000002195 #23	ENSSMAG00000001960	ENSSMAG00000001888	ENSSMAG00000001862	eeig2a (ENSSMAG00000001814)	ENSSMAG00000001781
Tongue sole	MODERN SPECIES	12	ENSCSEG00000014798	eif4e2 (ENSCSEG00000014782)	chrng (ENSCSEG00000014762)	ENSCSEG00000014742	tm6sf2a (ENSCSEG00000014728) #23	ENSCSEG00000014706 #25	ENSCSEG00000014696	SLC25A42 (ENSCSEG00000014688) #31	ARMC6 (ENSCSEG00000014670) #32	MAU2 (ENSCSEG00000014593) #21	ENSCSEG00000014545 #20	fzr1a (ENSCSEG00000014514)	ENSCSEG00000014494	ENSCSEG00000014456	rnf126 (ENSCSEG00000014439)	SUGP1 (ENSCSEG00000014421) #22	stk11 (ENSCSEG00000014404)	ENSCSEG00000014388	ENSCSEG00000014376	cirbpa (ENSCSEG00000014344)	NDUFA13 (ENSCSEG00000014328) #18	plekhj1 (ENSCSEG00000014322)	sf3a2 (ENSCSEG00000014308)	ENSCSEG00000014294	ONECUT3 (ENSCSEG00000014280)	ENSCSEG00000014265	tcf3a (ENSCSEG00000014183)	UQCR11 (ENSCSEG00000014170)	mbd3a (ENSCSEG00000014164)	MEX3D (ENSCSEG00000014157)	ENSCSEG00000014126
Pinecone sodierfish	MODERN SPECIES	8	MEX3D (ENSMMDG00005001969)	mbd3a (ENSMMDG00005001994)	ENSMMDG00005001997	tcf3a (ENSMMDG00005002001)	ENSMMDG00005002010	map2k2b (ENSMMDG00005002024)	ENSMMDG00005002114	ENSMMDG00005002225	ENSMMDG00005002228	sf3a2 (ENSMMDG00005002233)	plekhj1 (ENSMMDG00005002240)	fzr1a (ENSMMDG00005002253)	ENSMMDG00005002807	ENSMMDG00005002824	rnf126 (ENSMMDG00005002837)	SUGP1 (ENSMMDG00005002857) #22	stk11 (ENSMMDG00005002884)	ENSMMDG00005002898	ENSMMDG00005002904	ENSMMDG00005002926	ENSMMDG00005003168	NDUFA13 (ENSMMDG00005003172) #18	GATAD2A (ENSMMDG00005003177) #20	MAU2 (ENSMMDG00005003240) #21	ARMC6 (ENSMMDG00005003707) #32	SLC25A42 (ENSMMDG00005003719) #31	ENSMMDG00005003736 #25	ENSMMDG00005003744 #25	tm6sf2a (ENSMMDG00005003756) #23	ENSMMDG00005003769	ENSMMDG00005003773
Cod	MODERN SPECIES	21	ENSGMOG00000032283	ENSGMOG00000012238	ENSGMOG00000012220	MEX3D (ENSGMOG00000023271)	mbd3a (ENSGMOG00000012214)	tcf3a (ENSGMOG00000012207)	map2k2b (ENSGMOG00000012201)	ONECUT3 (ENSGMOG00000012200)	ENSGMOG00000012197	sf3a2 (ENSGMOG00000012186)	plekhj1 (ENSGMOG00000012181)	ENSGMOG00000023161	ENSGMOG00000012177	ENSGMOG00000011849	ENSGMOG00000012165	ENSGMOG00000012159 #22	ENSGMOG00000012155	ENSGMOG00000036457	ENSGMOG00000012137	NDUFA13 (ENSGMOG00000012133) #18	ENSGMOG00000012130 #20	MAU2 (ENSGMOG00000028080) #21	ENSGMOG00000012115 #32	ENSGMOG00000012114 #31	ENSGMOG00000027592 #25	ENSGMOG00000012104 #23	ENSGMOG00000012093	ENSGMOG00000012088	ENSGMOG00000012086	eeig2a (ENSGMOG00000012081)	ENSGMOG00000012080
Osteoglossiformes	ANCESTRAL SPECIES	72	ENSGT00940000162613.d	ENSGT00940000154662.d.d.b.a	ENSGT00940000159261.d.b	ENSGT00940000160088	ENSGT00940000154201.a.a.b.d	ENSGT00940000177291	ENSGT00950000183112.b.a.a.b.a	ENSGT00950000183112.b.a.a.b.b	ENSGT00940000162487	ENSGT00950000182925.C.a.a	ENSGT00940000161721.h	ENSGT00940000156523.b.f	ENSGT00940000159142.t	ENSGT00940000157113.b	ENSGT00940000161332.e	ENSGT00410000025695.a #22	ENSGT00940000158050	ENSGT00390000009230.b	ENSGT00390000017576	ENSGT00510000049027.d	ENSGT00390000000719 #18	ENSGT00390000004097.a.h #20	ENSGT00390000012198.a.b #21	ENSGT00390000002913 #32	ENSGT00940000158163 #31	ENSGT00390000000672.a.a #30	ENSGT00390000014856 #28	ENSGT00940000158649.a.b #25	ENSGT00390000012913.a.a #23	ENSGT00940000159946.j	ENSGT00950000183110.b.a.e ##13
P. kingsleyae	MODERN SPECIES	57	ENSPKIG00000011310	tcf3a (ENSPKIG00000011233)	MEX3D (ENSPKIG00000011176)	eef2b (ENSPKIG00000011101)	ENSPKIG00000011068	sirt6 (ENSPKIG00000011041)	ENSPKIG00000010998	rgmd (ENSPKIG00000010968)	HSD11B1L (ENSPKIG00000010947)	ENSPKIG00000010931	FGF22 (ENSPKIG00000010914)	HCN2 (ENSPKIG00000010869)	bsg (ENSPKIG00000010826)	ENSPKIG00000010809	ENSPKIG00000010799	SUGP1 (ENSPKIG00000010747) #22	stk11 (ENSPKIG00000010702)	CBARP (ENSPKIG00000010672)	atp5f1d (ENSPKIG00000010642)	ENSPKIG00000010614	cirbpa (ENSPKIG00000010561)	YJEFN3 (ENSPKIG00000010532) #17	NDUFA13 (ENSPKIG00000010507) #18	GATAD2A (ENSPKIG00000010439) #20	MAU2 (ENSPKIG00000010333) #21	ARMC6 (ENSPKIG00000010274) #32	slc25a42 (ENSPKIG00000010200) #31	tmem161a (ENSPKIG00000010088) #30	ENSPKIG00000010038	borcs8 (ENSPKIG00000010007) #28	ENSPKIG00000009939 #25
Asian bonytongue	MODERN SPECIES	17	ENSSFOG00015029384	tcf3a (ENSSFOG00015010645)	ENSSFOG00015010547	eef2b (ENSSFOG00015010432)	CREB3L3 (ENSSFOG00015010395)	sirt6 (ENSSFOG00015028025)	CELF5 (ENSSFOG00015010315)	HSD11B1L (ENSSFOG00015010301)	ENSSFOG00015010276	FGF22 (ENSSFOG00015010264)	HCN2 (ENSSFOG00015010200)	ENSSFOG00015010250	bsg (ENSSFOG00015028160)	rnf126 (ENSSFOG00015010159)	FSTL3 (ENSSFOG00015027716)	SUGP1 (ENSSFOG00015010075) #22	stk11 (ENSSFOG00015010043)	CBARP (ENSSFOG00015010002)	atp5f1d (ENSSFOG00015009981)	ENSSFOG00015032925	cirbpa (ENSSFOG00015009951)	YJEFN3 (ENSSFOG00015009877) #17	NDUFA13 (ENSSFOG00015009650) #18	GATAD2A (ENSSFOG00015009592) #20	MAU2 (ENSSFOG00015009561) #21	ARMC6 (ENSSFOG00015033233) #32	slc25a42 (ENSSFOG00015009477) #31	tmem161a (ENSSFOG00015009392) #30	borcs8 (ENSSFOG00015009345) #28	ENSSFOG00015026145 #25	tm6sf2a (ENSSFOG00015009281) #23
Spotted gar	MODERN SPECIES	657	micos13 (ENSLOCG00000005430)	ENSLOCG00000005412	ENSLOCG00000005390	ENSLOCG00000005371	ENSLOCG00000005356	ENSLOCG00000005312	ENSLOCG00000005290	ENSLOCG00000005263	fgf22 (ENSLOCG00000005240)	POLRMT (ENSLOCG00000005222)	HCN2 (ENSLOCG00000005192)	bsg (ENSLOCG00000005175)	rnf126 (ENSLOCG00000005159)	fstl3 (ENSLOCG00000005141)	cfd (ENSLOCG00000005116)	SUGP1 (ENSLOCG00000005094) #22	stk11 (ENSLOCG00000005072)	CBARP (ENSLOCG00000005061)	midn (ENSLOCG00000005039)	ENSLOCG00000005031	ENSLOCG00000004997	si:ch211-212d10.2 (ENSLOCG00000004977)	CILP2 (ENSLOCG00000004969) #16	yjefn3 (ENSLOCG00000004954) #17	NDUFA13 (ENSLOCG00000004936) #18	tssk6 (ENSLOCG00000017633) #19	gatad2ab (ENSLOCG00000004919) #20	MAU2 (ENSLOCG00000004881) #21	ARMC6 (ENSLOCG00000004866) #32	slc25a42 (ENSLOCG00000004848) #31	tmem161a (ENSLOCG00000004829) #30
Elephant shark	MODERN SPECIES	1549	ENSCMIG00000006033	ENSCMIG00000006031	MYO9B (ENSCMIG00000006006)	fkbp8 (ENSCMIG00000005987)	ell (ENSCMIG00000005974)	isyna1 (ENSCMIG00000005953)	zgc:110158 (ENSCMIG00000005926)	keap1a (ENSCMIG00000005917)	tmem59l (ENSCMIG00000005911)	crlf1b (ENSCMIG00000005903)	rex1bd (ENSCMIG00000005899)	FCHO1 (ENSCMIG00000005885)	MAP1S (ENSCMIG00000005873)	ENSCMIG00000005871	ENSCMIG00000005865 #33	SUGP1 (ENSCMIG00000005859) #22	TM6SF2 (ENSCMIG00000005843) #23	ENSCMIG00000005835	ENSCMIG00000005833	kcnn1b (ENSCMIG00000005806)	ccdc124 (ENSCMIG00000005789)	ENSCMIG00000005785	babam1 (ENSCMIG00000005781)	dda1 (ENSCMIG00000005772)	ANO8 (ENSCMIG00000005759)	ENSCMIG00000005754	ENSCMIG00000005740	rab3ab (ENSCMIG00000005720)	ENSCMIG00000005713	arrdc2 (ENSCMIG00000005694)	ENSCMIG00000005685
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00410000025695.b #33
Elephant shark	MODERN SPECIES	1549	arrdc2 (ENSCMIG00000005694)	ENSCMIG00000005713	rab3ab (ENSCMIG00000005720)	ENSCMIG00000005740	ENSCMIG00000005754	ANO8 (ENSCMIG00000005759)	dda1 (ENSCMIG00000005772)	babam1 (ENSCMIG00000005781)	ENSCMIG00000005785	ccdc124 (ENSCMIG00000005789)	kcnn1b (ENSCMIG00000005806)	ENSCMIG00000005833	ENSCMIG00000005835	TM6SF2 (ENSCMIG00000005843) #23	SUGP1 (ENSCMIG00000005859) #22	ENSCMIG00000005865 #33	ENSCMIG00000005871	MAP1S (ENSCMIG00000005873)	FCHO1 (ENSCMIG00000005885)	rex1bd (ENSCMIG00000005899)	crlf1b (ENSCMIG00000005903)	tmem59l (ENSCMIG00000005911)	keap1a (ENSCMIG00000005917)	zgc:110158 (ENSCMIG00000005926)	isyna1 (ENSCMIG00000005953)	ell (ENSCMIG00000005974)	fkbp8 (ENSCMIG00000005987)	MYO9B (ENSCMIG00000006006)	ENSCMIG00000006031	ENSCMIG00000006033	ENSCMIG00000006036
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00410000025695.b #33
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34
Coelacanth	MODERN SPECIES	1195													TMEM161A (ENSLACG00000011298) #30	SLC25A42 (ENSLACG00000010791) #31	ARMC6 (ENSLACG00000010594) #32	SUGP2 (ENSLACG00000010085) #33	ENSLACG00000009677	HOMER3 (ENSLACG00000008840) #34	uba52 (ENSLACG00000008132)	rex1bd (ENSLACG00000007836)	CRLF1 (ENSLACG00000007457)	TMEM59L (ENSLACG00000006677)	KLHL26 (ENSLACG00000005947)	CRTC1 (ENSLACG00000004626)	ENSLACG00000002929
Tetrapoda	ANCESTRAL SPECIES	50	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416
Anura	ANCESTRAL SPECIES	119	ENSGT00390000007227.b #17	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416.b
Leishan spiny toad	MODERN SPECIES		SUGP1 (ENSLLEG00000021601) #22	TM6SF2 (ENSLLEG00000021856) #23	HAPLN4 (ENSLLEG00000022101) #24	NCAN (ENSLLEG00000022173) #25	ENSLLEG00000022581	ENSLLEG00000022604	NR2C2AP (ENSLLEG00000022668) #26	RFXANK (ENSLLEG00000022726) #27	BORCS8 (ENSLLEG00000022858) #28	ENSLLEG00000022900	MEF2B (ENSLLEG00000022939) #29	TMEM161A (ENSLLEG00000023032) #30	SLC25A42 (ENSLLEG00000023359) #31	ENSLLEG00000023562	ARMC6 (ENSLLEG00000023586) #32	SUGP2 (ENSLLEG00000023662) #33	ENSLLEG00000023826	ENSLLEG00000023894	ENSLLEG00000023920	HOMER3 (ENSLLEG00000024083) #34	ENSLLEG00000024299	DDX49 (ENSLLEG00000024349) #35	COPE (ENSLLEG00000024473) #36	CERS1 (ENSLLEG00000024933) #37	ENSLLEG00000024991	XPA (ENSLLEG00000025010)	ENSLLEG00000025079	NDUFA13 (ENSLLEG00000025189) #18	ENSLLEG00000025227	ENSLLEG00000025252 #17	CILP2 (ENSLLEG00000025352) #16
Frog	MODERN SPECIES		yjefn3 (ENSXETG00000013061) #17	exosc3 (ENSXETG00000013060)	gatad2a (ENSXETG00000013053) #20	mau2 (ENSXETG00000013046) #21	sugp1 (ENSXETG00000013044) #22	borcs8 (ENSXETG00000040421) #28	rfxank (ENSXETG00000013042) #27	nr2c2ap (ENSXETG00000037690) #26	ncan (ENSXETG00000014328) #25	hapln4 (ENSXETG00000014330) #24	tm6sf2 (ENSXETG00000014331) #23	tmem221 (ENSXETG00000036930)	tmem161a (ENSXETG00000014335) #30	slc25a42 (ENSXETG00000014336) #31	armc6 (ENSXETG00000014338) #32	sugp2 (ENSXETG00000030450) #33	micos13 (ENSXETG00000039864)	hsd11b1l (ENSXETG00000014342)	celf5 (ENSXETG00000014344)	s1pr4 (ENSXETG00000044238)	ncln (ENSXETG00000014348)	plpp2 (ENSXETG00000026886)	tle2 (ENSXETG00000014353)	tle5 (ENSXETG00000014365)	gna11 (ENSXETG00000014367)	shb (ENSXETG00000014718)	ENSXETG00000043617	aldh1b1 (ENSXETG00000014720)	igfbpl1 (ENSXETG00000014721)	topors (ENSXETG00000014724)	ENSXETG00000037169
Amniota	ANCESTRAL SPECIES	23	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000157413	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705	ENSGT00940000155914
Sauria	ANCESTRAL SPECIES	20	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Lepidosauria	ANCESTRAL SPECIES	35	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.m.b #34	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b.d.a	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1565														ARMC6 (ENSSPUG00000010822) #32	ENSSPUG00000010778 #33	ENSSPUG00000010736 #33	HOMER3 (ENSSPUG00000010716) #34	ENSSPUG00000010703 #34	DDX49 (ENSSPUG00000010688) #35	COPE (ENSSPUG00000010666) #36	CERS1 (ENSSPUG00000010617) #37	ENSSPUG00000010588	UPF1 (ENSSPUG00000010538)	CRTC1 (ENSSPUG00000010424)	KLHL26 (ENSSPUG00000010387)	TMEM59L (ENSSPUG00000010363)	CRLF1 (ENSSPUG00000010342)	ENSSPUG00000010329	UBA52 (ENSSPUG00000010306)	KXD1 (ENSSPUG00000010296)	FKBP8 (ENSSPUG00000010283)
tuatara	MODERN SPECIES	1565															ARMC6 (ENSSPUG00000010822) #32	ENSSPUG00000010778 #33	ENSSPUG00000010736 #33	HOMER3 (ENSSPUG00000010716) #34	ENSSPUG00000010703 #34	DDX49 (ENSSPUG00000010688) #35	COPE (ENSSPUG00000010666) #36	CERS1 (ENSSPUG00000010617) #37	ENSSPUG00000010588	UPF1 (ENSSPUG00000010538)	CRTC1 (ENSSPUG00000010424)	KLHL26 (ENSSPUG00000010387)	TMEM59L (ENSSPUG00000010363)	CRLF1 (ENSSPUG00000010342)	ENSSPUG00000010329	UBA52 (ENSSPUG00000010306)	KXD1 (ENSSPUG00000010296)
Episquamata	ANCESTRAL SPECIES	18	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b.d.a	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00940000161332
Laterata	ANCESTRAL SPECIES	37	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413
Argentine black and white tegu	MODERN SPECIES	106	NDUFA13 (ENSSMRG00000000580) #18	GATAD2A (ENSSMRG00000000536) #20	MAU2 (ENSSMRG00000000406) #21	SUGP1 (ENSSMRG00000000352) #22	TM6SF2 (ENSSMRG00000000324) #23	HAPLN4 (ENSSMRG00000000158) #24	NCAN (ENSSMRG00000000110) #25	NR2C2AP (ENSSMRG00000000094) #26	RFXANK (ENSSMRG00000000051) #27	BORCS8 (ENSSMRG00000000033) #28	ENSSMRG00000022975	MEF2B (ENSSMRG00000022974) #29	TMEM161A (ENSSMRG00000022973) #30	SLC25A42 (ENSSMRG00000022972) #31	ARMC6 (ENSSMRG00000022971) #32	SUGP2 (ENSSMRG00000022970) #33	ENSSMRG00000022969	HOMER3 (ENSSMRG00000022968) #34	DDX49 (ENSSMRG00000022967) #35	COPE (ENSSMRG00000022966) #36	CERS1 (ENSSMRG00000022965) #37	ENSSMRG00000022964	UPF1 (ENSSMRG00000022963)	GTPBP3 (ENSSMRG00000022962)	ANO8 (ENSSMRG00000022961)	DDA1 (ENSSMRG00000022960)	ELL (ENSSMRG00000022959)	ISYNA1 (ENSSMRG00000022958)	SSBP4 (ENSSMRG00000022957)	ENSSMRG00000022956	ENSSMRG00000022955
Common wall lizard	MODERN SPECIES	9	TM6SF2 (ENSPMRG00000021377) #23	HAPLN4 (ENSPMRG00000021383) #24	NCAN (ENSPMRG00000021434) #25	NR2C2AP (ENSPMRG00000021664) #26	RFXANK (ENSPMRG00000021677) #27	ENSPMRG00000021683	ENSPMRG00000021689	MEF2B (ENSPMRG00000021693) #29	TMEM161A (ENSPMRG00000021702) #30	SLC25A42 (ENSPMRG00000021711) #31	ENSPMRG00000021717 #32	ENSPMRG00000021724	ENSPMRG00000021726	ENSPMRG00000021729 #32	ENSPMRG00000021733 #32	SUGP2 (ENSPMRG00000021741) #33	ENSPMRG00000021750	HOMER3 (ENSPMRG00000021766) #34	DDX49 (ENSPMRG00000021780) #35	COPE (ENSPMRG00000021792) #36	ENSPMRG00000021803	CERS1 (ENSPMRG00000021809) #37	ENSPMRG00000021814	UPF1 (ENSPMRG00000021822)	ENSPMRG00000021836	ENSPMRG00000021845	ENSPMRG00000021897	ENSPMRG00000021907	S1PR4 (ENSPMRG00000021915)	ENSPMRG00000021921	ENSPMRG00000021928
Toxicofera	ANCESTRAL SPECIES	31	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413
Elapidae	ANCESTRAL SPECIES	3	ENSGT00390000000719.d #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231.i.a #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00950000185950	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231.i.a #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00390000000719.d #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081.m.a #34	ENSGT00730000111231.i.a #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413
Mainland tiger snake	MODERN SPECIES	191	GATAD2A (ENSNSUG00000017263) #20	MAU2 (ENSNSUG00000017183) #21	SUGP1 (ENSNSUG00000017182) #22	TM6SF2 (ENSNSUG00000017181) #23	HAPLN4 (ENSNSUG00000017180) #24	ENSNSUG00000017179 #25	ENSNSUG00000017178 #25	NR2C2AP (ENSNSUG00000017177) #26	RFXANK (ENSNSUG00000017158) #27	BORCS8 (ENSNSUG00000017157) #28	ENSNSUG00000017155	ENSNSUG00000017154 #29	TMEM161A (ENSNSUG00000017150) #30	SLC25A42 (ENSNSUG00000017149) #31	ARMC6 (ENSNSUG00000017148) #32	SUGP2 (ENSNSUG00000017147) #33	ENSNSUG00000017139	HOMER3 (ENSNSUG00000017134) #34
Eastern brown snake	MODERN SPECIES	10	GATAD2A (ENSPTXG00000002333) #20	MAU2 (ENSPTXG00000002334) #21	SUGP1 (ENSPTXG00000002335) #22	TM6SF2 (ENSPTXG00000002337) #23	ENSPTXG00000002338 #24	ENSPTXG00000002340 #25	ENSPTXG00000002343 #25	NR2C2AP (ENSPTXG00000002344) #26	RFXANK (ENSPTXG00000002349) #27	BORCS8 (ENSPTXG00000002351) #28	ENSPTXG00000002354	MEF2B (ENSPTXG00000002356) #29	TMEM161A (ENSPTXG00000002360) #30	SLC25A42 (ENSPTXG00000002364) #31	ARMC6 (ENSPTXG00000002367) #32	SUGP2 (ENSPTXG00000002368) #33	ENSPTXG00000002371	ENSPTXG00000002373 #34	ENSPTXG00000002375 #34	DDX49 (ENSPTXG00000002377) #35	COPE (ENSPTXG00000002378) #36	CERS1 (ENSPTXG00000002381) #37	ENSPTXG00000002384	UPF1 (ENSPTXG00000002385)	THBS4 (ENSPTXG00000002388)	CRTC1 (ENSPTXG00000002389)	KLHL26 (ENSPTXG00000002391)	TMEM59L (ENSPTXG00000002392)	CRLF1 (ENSPTXG00000002393)	ENSPTXG00000002395	UBA52 (ENSPTXG00000002396)
Blue-lipped sea krait	MODERN SPECIES	4064															ARMC6 (ENSLLTG00000016008) #32	SUGP2 (ENSLLTG00000016011) #33
Indian cobra	MODERN SPECIES		NDUFA13 (ENSNNAG00000001445) #18	GATAD2A (ENSNNAG00000001467) #20	MAU2 (ENSNNAG00000001497) #21	SUGP1 (ENSNNAG00000001518) #22	TM6SF2 (ENSNNAG00000001539) #23	ENSNNAG00000001558	HAPLN4 (ENSNNAG00000001578) #24	NCAN (ENSNNAG00000001611) #25	NR2C2AP (ENSNNAG00000001682) #26	RFXANK (ENSNNAG00000001702) #27	BORCS8 (ENSNNAG00000001727) #28	ENSNNAG00000001734 #29	TMEM161A (ENSNNAG00000001750) #30	SLC25A42 (ENSNNAG00000001764) #31	ARMC6 (ENSNNAG00000001775) #32	SUGP2 (ENSNNAG00000001797) #33	ENSNNAG00000001830	HOMER3 (ENSNNAG00000001848) #34	DDX49 (ENSNNAG00000001874) #35	COPE (ENSNNAG00000001905) #36	CERS1 (ENSNNAG00000001921) #37	ENSNNAG00000001932	UPF1 (ENSNNAG00000001946)	ENSNNAG00000001970	CRTC1 (ENSNNAG00000001982)	ENSNNAG00000001994	ENSNNAG00000001998	ENSNNAG00000002004	TMEM59L (ENSNNAG00000002015)	CRLF1 (ENSNNAG00000002027)	ENSNNAG00000002033
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Archosauria	ANCESTRAL SPECIES	16	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Aves	ANCESTRAL SPECIES	20	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Neognathae	ANCESTRAL SPECIES	21	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Passeriformes	ANCESTRAL SPECIES	34	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Great tit	MODERN SPECIES	21	GDF15 (ENSPMJG00000011726)	ENSPMJG00000011725	ENSPMJG00000011724	ELL (ENSPMJG00000011723)	FKBP8 (ENSPMJG00000011722)	KXD1 (ENSPMJG00000011721)	UBA52 (ENSPMJG00000011720)	ENSPMJG00000011719	CRLF1 (ENSPMJG00000011718)	TMEM59L (ENSPMJG00000011717)	KLHL26 (ENSPMJG00000011716)	CRTC1 (ENSPMJG00000011715)	ENSPMJG00000011713	SLC25A42 (ENSPMJG00000011711) #31	ARMC6 (ENSPMJG00000011710) #32	SUGP2 (ENSPMJG00000011709) #33	ENSPMJG00000011708	ENSPMJG00000011707	MAP1S (ENSPMJG00000011706)	GADD45B (ENSPMJG00000011705)	GNG7 (ENSPMJG00000011702)	DIRAS1 (ENSPMJG00000011701)	SLC39A3 (ENSPMJG00000011700)	THOP1 (ENSPMJG00000011695)	ADAMTSL5 (ENSPMJG00000011694)	PCSK4 (ENSPMJG00000011692)	REEP6 (ENSPMJG00000011691)	ENSPMJG00000011690	RPS15 (ENSPMJG00000011687)	DAZAP1 (ENSPMJG00000011686)	NDUFS7 (ENSPMJG00000011685)
Passeriformes_d	ANCESTRAL SPECIES	35	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Flycatcher	MODERN SPECIES	241														SLC25A42 (ENSFALG00000025549) #31	ARMC6 (ENSFALG00000000082) #32	SUGP2 (ENSFALG00000000081) #33
Passeriformes_g	ANCESTRAL SPECIES	39	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Medium ground finch	MODERN SPECIES	414														SLC25A42 (ENSGFOG00000007274) #31	ARMC6 (ENSGFOG00000007282) #32	SUGP2 (ENSGFOG00000007284) #33	HOMER3 (ENSGFOG00000007296) #34	DDX49 (ENSGFOG00000002048) #35
Passeroidea	ANCESTRAL SPECIES	38	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT01060000249150	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Zebra finch	MODERN SPECIES	21	ENSTGUG00000020486	ENSTGUG00000026134	CILP2 (ENSTGUG00000019631) #16	SUGP1 (ENSTGUG00000013941) #22	TM6SF2 (ENSTGUG00000013966) #23	HAPLN4 (ENSTGUG00000019161) #24	NCAN (ENSTGUG00000019059) #25	ENSTGUG00000020853 #26	RFXANK (ENSTGUG00000014033) #27	ENSTGUG00000024488 #28	MEF2B (ENSTGUG00000022364) #29	ENSTGUG00000023122	TMEM161A (ENSTGUG00000025437) #30	SLC25A42 (ENSTGUG00000020561) #31	ARMC6 (ENSTGUG00000001090) #32	SUGP2 (ENSTGUG00000001088) #33	HOMER3 (ENSTGUG00000001080) #34	DDX49 (ENSTGUG00000001072) #35	ENSTGUG00000029565 #36	CERS1 (ENSTGUG00000014035) #37	ENSTGUG00000028778	UPF1 (ENSTGUG00000001057)	ENSTGUG00000014102	CRTC1 (ENSTGUG00000001067)	KLHL26 (ENSTGUG00000001064)	TMEM59L (ENSTGUG00000020934)	CRLF1 (ENSTGUG00000001061)	ENSTGUG00000028566	UBA52 (ENSTGUG00000024751)	KXD1 (ENSTGUG00000001051)	FKBP8 (ENSTGUG00000001043)
Common canary	MODERN SPECIES	109														SLC25A42 (ENSSCAG00000011740) #31	ARMC6 (ENSSCAG00000011747) #32	SUGP2 (ENSSCAG00000011778) #33	ENSSCAG00000011780	ENSSCAG00000011782	UPF1 (ENSSCAG00000011786)	ENSSCAG00000011799	ENSSCAG00000011807	CRTC1 (ENSSCAG00000011818)	ENSSCAG00000011873	KLHL26 (ENSSCAG00000011874)	TMEM59L (ENSSCAG00000011880)	CRLF1 (ENSSCAG00000011886)	ENSSCAG00000011890	UBA52 (ENSSCAG00000011895)	KXD1 (ENSSCAG00000011900)	FKBP8 (ENSSCAG00000011929)	ELL (ENSSCAG00000012011)
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.h #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000156569.a.a	ENSGT00940000166035	ENSGT00940000153593.c.a
Kakapo	MODERN SPECIES	13	NDUFA13 (ENSSHBG00005016006) #18	GATAD2A (ENSSHBG00005016010) #20	MAU2 (ENSSHBG00005016045) #21	SUGP1 (ENSSHBG00005016077) #22	TM6SF2 (ENSSHBG00005016084) #23	HAPLN4 (ENSSHBG00005016090) #24	NCAN (ENSSHBG00005016099) #25	NR2C2AP (ENSSHBG00005016311) #26	RFXANK (ENSSHBG00005016324) #27	BORCS8 (ENSSHBG00005016340) #28	ENSSHBG00005016346	MEF2B (ENSSHBG00005016361) #29	TMEM161A (ENSSHBG00005016377) #30	SLC25A42 (ENSSHBG00005016405) #31	ARMC6 (ENSSHBG00005016636) #32	SUGP2 (ENSSHBG00005016643) #33	ENSSHBG00005016648	HOMER3 (ENSSHBG00005016668) #34	ENSSHBG00005016679 #34	DDX49 (ENSSHBG00005016700) #35	COPE (ENSSHBG00005017048) #36	CERS1 (ENSSHBG00005017057) #37	ENSSHBG00005017060	UPF1 (ENSSHBG00005017089)	ENSSHBG00005017399	CRTC1 (ENSSHBG00005017446)	KLHL26 (ENSSHBG00005017448)	TMEM59L (ENSSHBG00005017449)	CRLF1 (ENSSHBG00005017451)	ENSSHBG00005017455	UBA52 (ENSSHBG00005017457)
Golden eagle	MODERN SPECIES	3	GATAD2A (ENSACCG00020005214) #20	MAU2 (ENSACCG00020005272) #21	SUGP1 (ENSACCG00020005346) #22	TM6SF2 (ENSACCG00020005379) #23	HAPLN4 (ENSACCG00020005415) #24	NCAN (ENSACCG00020005458) #25	ENSACCG00020005528	NR2C2AP (ENSACCG00020005548) #26	RFXANK (ENSACCG00020005611) #27	BORCS8 (ENSACCG00020005634) #28	ENSACCG00020005651	MEF2B (ENSACCG00020005665) #29	TMEM161A (ENSACCG00020005730) #30	SLC25A42 (ENSACCG00020005755) #31	ARMC6 (ENSACCG00020005768) #32	SUGP2 (ENSACCG00020005795) #33	HOMER3 (ENSACCG00020005833) #34	DDX49 (ENSACCG00020005865) #35	COPE (ENSACCG00020005888) #36	CERS1 (ENSACCG00020005915) #37	ENSACCG00020005919	UPF1 (ENSACCG00020005946)	ENSACCG00020005982	CRTC1 (ENSACCG00020006031)	KLHL26 (ENSACCG00020006048)	TMEM59L (ENSACCG00020006064)	ENSACCG00020006087	ENSACCG00020006101	UBA52 (ENSACCG00020006118)	KXD1 (ENSACCG00020006135)	FKBP8 (ENSACCG00020006152)
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Japanese quail	MODERN SPECIES	20	NDUFA13 (ENSCJPG00005011156) #18	GATAD2A (ENSCJPG00005011157) #20	MAU2 (ENSCJPG00005011158) #21	SUGP1 (ENSCJPG00005011161) #22	TM6SF2 (ENSCJPG00005011166) #23	HAPLN4 (ENSCJPG00005011167) #24	NCAN (ENSCJPG00005011168) #25	ENSCJPG00005011170 #26	RFXANK (ENSCJPG00005011171) #27	BORCS8 (ENSCJPG00005011172) #28	ENSCJPG00005011173	MEF2B (ENSCJPG00005011174) #29	ENSCJPG00005011175	SLC25A42 (ENSCJPG00005011178) #31	ARMC6 (ENSCJPG00005011186) #32	SUGP2 (ENSCJPG00005011187) #33	ENSCJPG00005011188	ENSCJPG00005011189 #34	ENSCJPG00005011190 #34	DDX49 (ENSCJPG00005011191) #35	COPE (ENSCJPG00005011259) #36	CERS1 (ENSCJPG00005011264) #37	ENSCJPG00005011266	UPF1 (ENSCJPG00005011267)	ENSCJPG00005011352	CRTC1 (ENSCJPG00005011543)	KLHL26 (ENSCJPG00005011608)	ENSCJPG00005011609	CRLF1 (ENSCJPG00005011610)	ENSCJPG00005011611	FKBP8 (ENSCJPG00005011613)
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Chicken	DUPLICATION
Chicken	MODERN SPECIES	20	NDUFA13 (ENSGALG00010028512) #18	GATAD2A (ENSGALG00010028516) #20	MAU2 (ENSGALG00010028518) #21	SUGP1 (ENSGALG00010028523) #22	TM6SF2 (ENSGALG00010028525) #23	HAPLN4 (ENSGALG00010028379) #24	NCAN (ENSGALG00010028386) #25	NR2C2AP (ENSGALG00010028430) #26	RFXANK (ENSGALG00010028432) #27	BORCS8 (ENSGALG00010028439) #28	ENSGALG00010028443	MEF2B (ENSGALG00010028444) #29	TMEM161A (ENSGALG00010028131) #30	SLC25A42 (ENSGALG00010028147) #31	ARMC6 (ENSGALG00010028150) #32	SUGP2 (ENSGALG00010028124) #33	ENSGALG00010028446 #33	ENSGALG00010028152	HOMER3 (ENSGALG00010028744) #34	DDX49 (ENSGALG00010028158) #35	COPE (ENSGALG00010028170) #36	CERS1 (ENSGALG00010028172) #37	GDF3 (ENSGALG00010028173)	UPF1 (ENSGALG00010028176)	COMP (ENSGALG00010028177)	CRTC1 (ENSGALG00010028183)	KLHL26 (ENSGALG00010028191)	TMEM59L (ENSGALG00010028451)	CRLF1 (ENSGALG00010028460)	ENSGALG00010028465	UBA52 (ENSGALG00010027131)
Chicken	MODERN SPECIES	20	GATAD2A (ENSGALG00010028516) #20	MAU2 (ENSGALG00010028518) #21	SUGP1 (ENSGALG00010028523) #22	TM6SF2 (ENSGALG00010028525) #23	HAPLN4 (ENSGALG00010028379) #24	NCAN (ENSGALG00010028386) #25	NR2C2AP (ENSGALG00010028430) #26	RFXANK (ENSGALG00010028432) #27	BORCS8 (ENSGALG00010028439) #28	ENSGALG00010028443	MEF2B (ENSGALG00010028444) #29	TMEM161A (ENSGALG00010028131) #30	SLC25A42 (ENSGALG00010028147) #31	ARMC6 (ENSGALG00010028150) #32	SUGP2 (ENSGALG00010028124) #33	ENSGALG00010028446 #33	ENSGALG00010028152	HOMER3 (ENSGALG00010028744) #34	DDX49 (ENSGALG00010028158) #35	COPE (ENSGALG00010028170) #36	CERS1 (ENSGALG00010028172) #37	GDF3 (ENSGALG00010028173)	UPF1 (ENSGALG00010028176)	COMP (ENSGALG00010028177)	CRTC1 (ENSGALG00010028183)	KLHL26 (ENSGALG00010028191)	TMEM59L (ENSGALG00010028451)	CRLF1 (ENSGALG00010028460)	ENSGALG00010028465	UBA52 (ENSGALG00010027131)	FKBP8 (ENSGALG00010027137)
Turkey	MODERN SPECIES	23	THOP1 (ENSMGAG00000004287)	SGTA (ENSMGAG00000004305)	SLC39A3 (ENSMGAG00000004341)	DIRAS1 (ENSMGAG00000016227)	HAPLN4 (ENSMGAG00000004362) #24	ENSMGAG00000020135	NR2C2AP (ENSMGAG00000017590) #26	RFXANK (ENSMGAG00000004446) #27	BORCS8 (ENSMGAG00000004466) #28	ENSMGAG00000004351	MEF2B (ENSMGAG00000004354) #29	ENSMGAG00000018039	TMEM161A (ENSMGAG00000004433) #30	SLC25A42 (ENSMGAG00000004473) #31	ARMC6 (ENSMGAG00000004486) #32	SUGP2 (ENSMGAG00000004496) #33	ENSMGAG00000004513	HOMER3 (ENSMGAG00000004581) #34	DDX49 (ENSMGAG00000004605) #35	COPE (ENSMGAG00000004649) #36	CERS1 (ENSMGAG00000004709) #37	ENSMGAG00000004721	UPF1 (ENSMGAG00000004745)	ENSMGAG00000004780	ENSMGAG00000004970	TMEM59L (ENSMGAG00000004986)	CRLF1 (ENSMGAG00000008435)	ENSMGAG00000021060	UBA52 (ENSMGAG00000021275)	KXD1 (ENSMGAG00000018696)	FKBP8 (ENSMGAG00000004939)
Anatidae	ANCESTRAL SPECIES	71	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649.d #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.d	ENSGT00530000064192	ENSGT00940000156705
Pink-footed goose	MODERN SPECIES	308	NDUFA13 (ENSABRG00000003036) #18	GATAD2A (ENSABRG00000003048) #20	MAU2 (ENSABRG00000003093) #21	SUGP1 (ENSABRG00000003136) #22	TM6SF2 (ENSABRG00000003169) #23	HAPLN4 (ENSABRG00000003196) #24	NCAN (ENSABRG00000003206) #25	ENSABRG00000003239 #26	RFXANK (ENSABRG00000003275) #27	BORCS8 (ENSABRG00000003310) #28	ENSABRG00000003339	MEF2B (ENSABRG00000003346) #29	TMEM161A (ENSABRG00000003380) #30	SLC25A42 (ENSABRG00000003394) #31	ARMC6 (ENSABRG00000003410) #32	SUGP2 (ENSABRG00000003433) #33	HOMER3 (ENSABRG00000003480) #34	DDX49 (ENSABRG00000003533) #35	COPE (ENSABRG00000003553) #36	CERS1 (ENSABRG00000003583) #37	ENSABRG00000003615	UPF1 (ENSABRG00000003691)	ENSABRG00000005294	CRTC1 (ENSABRG00000005352)	KLHL26 (ENSABRG00000005372)	TMEM59L (ENSABRG00000005381)	CRLF1 (ENSABRG00000005385)	UBA52 (ENSABRG00000005391)	KXD1 (ENSABRG00000005399)	FKBP8 (ENSABRG00000005403)	ELL (ENSABRG00000005411)
Duck	MODERN SPECIES	20	MICOS13 (ENSAPLG00000001598)	ENSAPLG00000005780	ENSAPLG00000006355	ENSAPLG00000020158	ENSAPLG00000019522	MAU2 (ENSAPLG00000002818) #21	SUGP1 (ENSAPLG00000002500) #22	HAPLN4 (ENSAPLG00000000916) #24	ENSAPLG00000017029 #25	NR2C2AP (ENSAPLG00000016443) #26	RFXANK (ENSAPLG00000016423) #27	ENSAPLG00000025930	TMEM161A (ENSAPLG00000006657) #30	SLC25A42 (ENSAPLG00000006582) #31	ARMC6 (ENSAPLG00000006480) #32	SUGP2 (ENSAPLG00000006469) #33	HOMER3 (ENSAPLG00000008170) #34	COPE (ENSAPLG00000008757) #36	CERS1 (ENSAPLG00000008945) #37	ENSAPLG00000009148	UPF1 (ENSAPLG00000009175)	ENSAPLG00000009709	CRTC1 (ENSAPLG00000010657)	KLHL26 (ENSAPLG00000011078)	ELL (ENSAPLG00000006360)	PGPEP1 (ENSAPLG00000007370)	ENSAPLG00000001869	ARHGEF18 (ENSAPLG00000015732)	INSR (ENSAPLG00000014259)	ENSAPLG00000025695	ENSAPLG00000021258
African ostrich	MODERN SPECIES	749															ARMC6 (ENSSCUG00000010205) #32	SUGP2 (ENSSCUG00000010204) #33	ENSSCUG00000010202	HOMER3 (ENSSCUG00000010201) #34	DDX49 (ENSSCUG00000010199) #35	COPE (ENSSCUG00000010198) #36	CERS1 (ENSSCUG00000010197) #37	ENSSCUG00000010196	UPF1 (ENSSCUG00000010194)	ENSSCUG00000010190	CRTC1 (ENSSCUG00000010183)	KLHL26 (ENSSCUG00000010182)
Australian saltwater crocodile	MODERN SPECIES	3	YJEFN3 (ENSCPRG00005015647) #17	NDUFA13 (ENSCPRG00005015651) #18	GATAD2A (ENSCPRG00005015653) #20	MAU2 (ENSCPRG00005015658) #21	SUGP1 (ENSCPRG00005015667) #22	TM6SF2 (ENSCPRG00005015672) #23	HAPLN4 (ENSCPRG00005015677) #24	NR2C2AP (ENSCPRG00005015681) #26	RFXANK (ENSCPRG00005015684) #27	BORCS8 (ENSCPRG00005015689) #28	ENSCPRG00005015692	MEF2B (ENSCPRG00005015695) #29	TMEM161A (ENSCPRG00005015699) #30	SLC25A42 (ENSCPRG00005015701) #31	ARMC6 (ENSCPRG00005015704) #32	SUGP2 (ENSCPRG00005015708) #33	ENSCPRG00005015709	HOMER3 (ENSCPRG00005015713) #34	DDX49 (ENSCPRG00005015719) #35	COPE (ENSCPRG00005015722) #36	ENSCPRG00005015724	UPF1 (ENSCPRG00005015727)	ENSCPRG00005015729	CRTC1 (ENSCPRG00005015733)	ENSCPRG00005015738	ENSCPRG00005015741	KLHL26 (ENSCPRG00005015744)	ENSCPRG00005015746	ENSCPRG00005015749	CRLF1 (ENSCPRG00005015750)	ENSCPRG00005015753
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Emydidae	ANCESTRAL SPECIES	14	ENSGT00390000000719 #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
painted turtle	MODERN SPECIES	771	YJEFN3 (ENSCPBG00000012447) #17	GATAD2A (ENSCPBG00000012450) #20	MAU2 (ENSCPBG00000012453) #21	SUGP1 (ENSCPBG00000012455) #22	TM6SF2 (ENSCPBG00000012458) #23	HAPLN4 (ENSCPBG00000012460) #24	NCAN (ENSCPBG00000012461) #25	NR2C2AP (ENSCPBG00000012463) #26	RFXANK (ENSCPBG00000012464) #27	BORCS8 (ENSCPBG00000012467) #28	ENSCPBG00000012469	MEF2B (ENSCPBG00000012471) #29	TMEM161A (ENSCPBG00000012479) #30	SLC25A42 (ENSCPBG00000012483) #31	ARMC6 (ENSCPBG00000012485) #32	SUGP2 (ENSCPBG00000012487) #33	ENSCPBG00000012490	HOMER3 (ENSCPBG00000012496) #34	DDX49 (ENSCPBG00000012500) #35	COPE (ENSCPBG00000012504) #36	CERS1 (ENSCPBG00000012508) #37	ENSCPBG00000012510	UPF1 (ENSCPBG00000012513)	THBS4 (ENSCPBG00000012536)	CRTC1 (ENSCPBG00000012907)	KLHL26 (ENSCPBG00000012909)	TMEM59L (ENSCPBG00000012910)	CRLF1 (ENSCPBG00000012911)	ENSCPBG00000012912	UBA52 (ENSCPBG00000012913)	KXD1 (ENSCPBG00000012914)
Three-toed box turtle	MODERN SPECIES	92	NDUFA13 (ENSTMTG00000013371) #18	GATAD2A (ENSTMTG00000013318) #20	MAU2 (ENSTMTG00000013280) #21	SUGP1 (ENSTMTG00000013266) #22	TM6SF2 (ENSTMTG00000013253) #23	HAPLN4 (ENSTMTG00000013225) #24	NCAN (ENSTMTG00000013156) #25	NR2C2AP (ENSTMTG00000013134) #26	RFXANK (ENSTMTG00000013105) #27	BORCS8 (ENSTMTG00000013093) #28	ENSTMTG00000013028	MEF2B (ENSTMTG00000013005) #29	TMEM161A (ENSTMTG00000012984) #30	SLC25A42 (ENSTMTG00000012962) #31	ARMC6 (ENSTMTG00000012947) #32	SUGP2 (ENSTMTG00000012920) #33	ENSTMTG00000012889	HOMER3 (ENSTMTG00000012853) #34	DDX49 (ENSTMTG00000012790) #35	COPE (ENSTMTG00000012775) #36	CERS1 (ENSTMTG00000012752) #37	ENSTMTG00000012739	UPF1 (ENSTMTG00000012695)	ENSTMTG00000012670	CRTC1 (ENSTMTG00000012645)	KLHL26 (ENSTMTG00000012633)	TMEM59L (ENSTMTG00000012614)	CRLF1 (ENSTMTG00000012585)	ENSTMTG00000012572	UBA52 (ENSTMTG00000012556)	KXD1 (ENSTMTG00000012547)
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00390000000719.b #18	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000164416	ENSGT00940000157413	ENSGT00940000155227	ENSGT00390000010652.D.b	ENSGT00940000159238.b	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Abingdon island giant tortoise	MODERN SPECIES	897															ARMC6 (ENSCABG00000016061) #32	SUGP2 (ENSCABG00000016062) #33	ENSCABG00000016063	HOMER3 (ENSCABG00000016067) #34	DDX49 (ENSCABG00000016075) #35	COPE (ENSCABG00000016084) #36	CERS1 (ENSCABG00000016108) #37	ENSCABG00000016109	UPF1 (ENSCABG00000016111)	ENSCABG00000016259	CRTC1 (ENSCABG00000016260)	KLHL26 (ENSCABG00000016263)	TMEM59L (ENSCABG00000016267)	CRLF1 (ENSCABG00000016270)	ENSCABG00000016271	UBA52 (ENSCABG00000016273)	KXD1 (ENSCABG00000016274)
Goode s thornscrub tortoise	MODERN SPECIES	14	NDUFA13 (ENSGEVG00005006122) #18	GATAD2A (ENSGEVG00005006074) #20	MAU2 (ENSGEVG00005005539) #21	SUGP1 (ENSGEVG00005005333) #22	TM6SF2 (ENSGEVG00005005276) #23	HAPLN4 (ENSGEVG00005005235) #24	NCAN (ENSGEVG00005005147) #25	NR2C2AP (ENSGEVG00005005076) #26	RFXANK (ENSGEVG00005005039) #27	BORCS8 (ENSGEVG00005005013) #28	ENSGEVG00005004987	MEF2B (ENSGEVG00005004959) #29	TMEM161A (ENSGEVG00005004899) #30	SLC25A42 (ENSGEVG00005004855) #31	ARMC6 (ENSGEVG00005004824) #32	SUGP2 (ENSGEVG00005004782) #33	ENSGEVG00005004681	HOMER3 (ENSGEVG00005004624) #34	DDX49 (ENSGEVG00005004539) #35	COPE (ENSGEVG00005004472) #36	CERS1 (ENSGEVG00005004366) #37	ENSGEVG00005004318	UPF1 (ENSGEVG00005019427)	THBS4 (ENSGEVG00005019413)	CRTC1 (ENSGEVG00005019397)	KLHL26 (ENSGEVG00005019386)	TMEM59L (ENSGEVG00005019360)	CRLF1 (ENSGEVG00005019342)	ENSGEVG00005019334	UBA52 (ENSGEVG00005019323)	KXD1 (ENSGEVG00005019317)
Chinese turtle	MODERN SPECIES	1790	NDUFA13 (ENSPSIG00000015655) #18	GATAD2A (ENSPSIG00000015717) #20	MAU2 (ENSPSIG00000016573) #21	SUGP1 (ENSPSIG00000016889) #22	TM6SF2 (ENSPSIG00000017375) #23	HAPLN4 (ENSPSIG00000017388) #24	NCAN (ENSPSIG00000017408) #25	ENSPSIG00000017603	ENSPSIG00000001137	NR2C2AP (ENSPSIG00000017608) #26	RFXANK (ENSPSIG00000017645) #27	BORCS8 (ENSPSIG00000006585) #28	TMEM161A (ENSPSIG00000006789) #30	SLC25A42 (ENSPSIG00000007452) #31	ARMC6 (ENSPSIG00000008070) #32	SUGP2 (ENSPSIG00000008256) #33	ENSPSIG00000008490	HOMER3 (ENSPSIG00000008524) #34	DDX49 (ENSPSIG00000008625) #35	COPE (ENSPSIG00000009381) #36	CERS1 (ENSPSIG00000009415) #37	ENSPSIG00000009471	UPF1 (ENSPSIG00000009491)	ENSPSIG00000009643	CRTC1 (ENSPSIG00000010543)	KLHL26 (ENSPSIG00000010574)	TMEM59L (ENSPSIG00000010763)	CRLF1 (ENSPSIG00000011140)	UBA52 (ENSPSIG00000011198)	KXD1 (ENSPSIG00000011318)	FKBP8 (ENSPSIG00000011511)
Mammalia	ANCESTRAL SPECIES	39	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Platypus	MODERN SPECIES	84	ENSOANG00000011547 #19	GATAD2A (ENSOANG00000006409) #20	ENSOANG00000012450 #21	SUGP1 (ENSOANG00000030496) #22	TM6SF2 (ENSOANG00000012176) #23	HAPLN4 (ENSOANG00000029891) #24	ENSOANG00000032130 #25	NR2C2AP (ENSOANG00000040380) #26	ENSOANG00000003658 #27	BORCS8 (ENSOANG00000043258) #28	ENSOANG00000046511	MEF2B (ENSOANG00000010126) #29	TMEM161A (ENSOANG00000011575) #30	SLC25A42 (ENSOANG00000001030) #31	ARMC6 (ENSOANG00000045954) #32	SUGP2 (ENSOANG00000004574) #33	ENSOANG00000043871	ENSOANG00000004573	ENSOANG00000044420 #35	COPE (ENSOANG00000004571) #36	CERS1 (ENSOANG00000004570) #37	ENSOANG00000004569	ENSOANG00000004568	COMP (ENSOANG00000002729)	CRTC1 (ENSOANG00000041674)	KLHL26 (ENSOANG00000005746)	ENSOANG00000045153	CRLF1 (ENSOANG00000036818)	ENSOANG00000047121	UBA52 (ENSOANG00000005752)	KXD1 (ENSOANG00000038897)
Theria	ANCESTRAL SPECIES	31	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Marsupialia	ANCESTRAL SPECIES	25	ENSGT00940000165800	ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Marsupialia_b	ANCESTRAL SPECIES	24	ENSGT00940000165800	ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
Diprotodontia	ANCESTRAL SPECIES	54		ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00940000153593.c.b
Diprotodontia_a	ANCESTRAL SPECIES	53		ENSGT00940000155854.d	ENSGT00940000163280	ENSGT00940000158590	ENSGT00940000160463	ENSGT00950000183103.d.b	ENSGT00940000157036	ENSGT00390000018299	ENSGT00950000183005.b.c	ENSGT00940000162613	ENSGT00940000165199	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000167763	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000166035	ENSGT00940000153593.c.a	ENSGT00530000064192
koala	MODERN SPECIES	133	ENSPCIG00000021249	KLF16 (ENSPCIG00000005422)	REXO1 (ENSPCIG00000013942)	ATP8B3 (ENSPCIG00000000575)	ONECUT3 (ENSPCIG00000000607)	TCF3 (ENSPCIG00000000701)	ENSPCIG00000000759	ENSPCIG00000000769	ENSPCIG00000000783	MEX3D (ENSPCIG00000000826)	ENSPCIG00000000833	MEF2B (ENSPCIG00000000841) #29	TMEM161A (ENSPCIG00000000862) #30	SLC25A42 (ENSPCIG00000033976) #31	ARMC6 (ENSPCIG00000000957) #32	SUGP2 (ENSPCIG00000000974) #33	ENSPCIG00000000990	HOMER3 (ENSPCIG00000001019) #34	DDX49 (ENSPCIG00000001050) #35	COPE (ENSPCIG00000001137) #36	CERS1 (ENSPCIG00000006153) #37	ENSPCIG00000006155	UPF1 (ENSPCIG00000006156)	COMP (ENSPCIG00000006229)	CRTC1 (ENSPCIG00000023392)	KLHL26 (ENSPCIG00000012947)	ENSPCIG00000031076	CRLF1 (ENSPCIG00000016157)	ENSPCIG00000016153	KXD1 (ENSPCIG00000016150)	FKBP8 (ENSPCIG00000016149)
Common wonbat	MODERN SPECIES	626	ENSVURG00010015577	ABHD17A (ENSVURG00010015569)	KLF16 (ENSVURG00010015560)	REXO1 (ENSVURG00010015541)	ATP8B3 (ENSVURG00010015529)	ONECUT3 (ENSVURG00010015518)	TCF3 (ENSVURG00010015477)	ENSVURG00010015467	ENSVURG00010015463	MEX3D (ENSVURG00010015379)	ENSVURG00010015363	MEF2B (ENSVURG00010015357) #29	TMEM161A (ENSVURG00010015346) #30	SLC25A42 (ENSVURG00010015339) #31	ARMC6 (ENSVURG00010015325) #32	SUGP2 (ENSVURG00010015311) #33	HOMER3 (ENSVURG00010015278) #34	DDX49 (ENSVURG00010015248) #35	COPE (ENSVURG00010015238) #36	CERS1 (ENSVURG00010015235) #37	ENSVURG00010015230	UPF1 (ENSVURG00010015221)	KLHL26 (ENSVURG00010015213)	ENSVURG00010015204	CRLF1 (ENSVURG00010015189)	ENSVURG00010015181	UBA52 (ENSVURG00010015122)	KXD1 (ENSVURG00010015106)	FKBP8 (ENSVURG00010015095)	ELL (ENSVURG00010015067)	ISYNA1 (ENSVURG00010015054)
Wallaby	MODERN SPECIES	6147																SUGP2 (ENSMEUG00000011307) #33
Tasmanian devil	MODERN SPECIES		SCAMP4 (ENSSHAG00000028703)	ENSSHAG00000024353	ENSSHAG00000031510	ABHD17A (ENSSHAG00000025789)	KLF16 (ENSSHAG00000028587)	REXO1 (ENSSHAG00000026227)	ENSSHAG00000014873	ONECUT3 (ENSSHAG00000031650)	TCF3 (ENSSHAG00000013735)	ENSSHAG00000013346	ENSSHAG00000024607	ENSSHAG00000030655	ENSSHAG00000012631 #29	TMEM161A (ENSSHAG00000012380) #30	SLC25A42 (ENSSHAG00000021004) #31	SUGP2 (ENSSHAG00000011705) #33	ARMC6 (ENSSHAG00000011840) #32	ENSSHAG00000011270	HOMER3 (ENSSHAG00000011091) #34	DDX49 (ENSSHAG00000010982) #35	COPE (ENSSHAG00000010821) #36	ENSSHAG00000030192	CERS1 (ENSSHAG00000010705) #37	UPF1 (ENSSHAG00000010499)	COMP (ENSSHAG00000009531)	CRTC1 (ENSSHAG00000009155)	KLHL26 (ENSSHAG00000008083)	ENSSHAG00000024929	CRLF1 (ENSSHAG00000007192)	ENSSHAG00000007133	UBA52 (ENSSHAG00000021283)
Opossum	MODERN SPECIES	2	ENSMODG00000004462	ENSMODG00000004426	ENSMODG00000004421	ENSMODG00000038677	REXO1 (ENSMODG00000004395)	ATP8B3 (ENSMODG00000004209)	ONECUT3 (ENSMODG00000004149)	TCF3 (ENSMODG00000004143)	UQCR11 (ENSMODG00000004132)	ENSMODG00000004125	MEX3D (ENSMODG00000004116)	MEF2B (ENSMODG00000004105) #29	TMEM161A (ENSMODG00000004083) #30	SLC25A42 (ENSMODG00000045593) #31	ARMC6 (ENSMODG00000004028) #32	SUGP2 (ENSMODG00000003992) #33	ENSMODG00000043314	HOMER3 (ENSMODG00000003771) #34	DDX49 (ENSMODG00000003745) #35	COPE (ENSMODG00000003729) #36	CERS1 (ENSMODG00000023939) #37	GDF1 (ENSMODG00000049198)	UPF1 (ENSMODG00000003689)	COMP (ENSMODG00000003651)	CRTC1 (ENSMODG00000003607)	KLHL26 (ENSMODG00000003568)	ENSMODG00000003550	CRLF1 (ENSMODG00000003510)	UBA52 (ENSMODG00000003499)	ENSMODG00000003489	FKBP8 (ENSMODG00000003483)
Eutheria	ANCESTRAL SPECIES	24	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Atlantogenata	ANCESTRAL SPECIES	42	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705	ENSGT00940000155914
Xenarthra	ANCESTRAL SPECIES	1643															ENSGT00390000002913 #32	ENSGT00410000025695.b #33
Armadillo	MODERN SPECIES	4797														ENSDNOG00000044381	ENSDNOG00000031008 #32	ENSDNOG00000037751 #33
Afrotheria	ANCESTRAL SPECIES	45	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705	ENSGT00940000155914
Afrotheria_a	ANCESTRAL SPECIES	44	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914	ENSGT00390000018395
Elephant	MODERN SPECIES	270	TSSK6 (ENSLAFG00000027015) #19	GATAD2A (ENSLAFG00000009470) #20	MAU2 (ENSLAFG00000021412) #21	SUGP1 (ENSLAFG00000017363) #22	TM6SF2 (ENSLAFG00000021853) #23	HAPLN4 (ENSLAFG00000031107) #24	NCAN (ENSLAFG00000015356) #25	NR2C2AP (ENSLAFG00000017559) #26	RFXANK (ENSLAFG00000017554) #27	BORCS8 (ENSLAFG00000031264) #28	ENSLAFG00000026493	MEF2B (ENSLAFG00000029184) #29	TMEM161A (ENSLAFG00000012976) #30	SLC25A42 (ENSLAFG00000003608) #31	ARMC6 (ENSLAFG00000021876) #32	SUGP2 (ENSLAFG00000018646) #33	CRLF1 (ENSLAFG00000008358)	HOMER3 (ENSLAFG00000002936) #34	DDX49 (ENSLAFG00000002934) #35	COPE (ENSLAFG00000002932) #36	GDF1 (ENSLAFG00000027424)	UPF1 (ENSLAFG00000014963)	COMP (ENSLAFG00000010855)	CRTC1 (ENSLAFG00000003043)	KLHL26 (ENSLAFG00000003041)	TMEM59L (ENSLAFG00000015467)	REX1BD (ENSLAFG00000008356)	UBA52 (ENSLAFG00000008353)	FKBP8 (ENSLAFG00000008984)	ELL (ENSLAFG00000028366)	ISYNA1 (ENSLAFG00000004178)
Hyrax	MODERN SPECIES	4222													ENSPCAG00000016734 #30	SLC25A42 (ENSPCAG00000016700) #31	ARMC6 (ENSPCAG00000016648) #32	ENSPCAG00000016577 #33
Tenrec	MODERN SPECIES	4512																SUGP2 (ENSETEG00000010805) #33
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00410000025695.b #33
Common shrew	MODERN SPECIES	8281																SUGP2 (ENSSARG00000007461) #33
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Suina	ANCESTRAL SPECIES	39	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Pig	MODERN SPECIES	10	GATAD2A (ENSSSCG00000013938) #20	MAU2 (ENSSSCG00000021664) #21	SUGP1 (ENSSSCG00000036970) #22	ENSSSCG00000048260	TM6SF2 (ENSSSCG00000059192) #23	HAPLN4 (ENSSSCG00000034887) #24	NCAN (ENSSSCG00000032131) #25	NR2C2AP (ENSSSCG00000023658) #26	RFXANK (ENSSSCG00000036310) #27	BORCS8 (ENSSSCG00000044084) #28	MEF2B (ENSSSCG00000030351) #29	TMEM161A (ENSSSCG00000033168) #30	SLC25A42 (ENSSSCG00000013927) #31	ENSSSCG00000044637	ARMC6 (ENSSSCG00000049430) #32	SUGP2 (ENSSSCG00000025839) #33	HOMER3 (ENSSSCG00000013919) #34	DDX49 (ENSSSCG00000025329) #35	COPE (ENSSSCG00000027840) #36	CERS1 (ENSSSCG00000013928) #37	UPF1 (ENSSSCG00000039301)	COMP (ENSSSCG00000013916)	CRTC1 (ENSSSCG00000013915)	KLHL26 (ENSSSCG00000013913)	TMEM59L (ENSSSCG00000013911)	CRLF1 (ENSSSCG00000013909)	REX1BD (ENSSSCG00000040666)	UBA52 (ENSSSCG00000053292)	KXD1 (ENSSSCG00000013906)	FKBP8 (ENSSSCG00000013905)	ELL (ENSSSCG00000040181)
Chacoan peccary	MODERN SPECIES	769	NDUFA13 (ENSCWAG00000008819) #18	TSSK6 (ENSCWAG00000008796) #19	GATAD2A (ENSCWAG00000008702) #20	MAU2 (ENSCWAG00000008506) #21	SUGP1 (ENSCWAG00000008452) #22	TM6SF2 (ENSCWAG00000008344) #23	HAPLN4 (ENSCWAG00000008277) #24	NCAN (ENSCWAG00000007920) #25	NR2C2AP (ENSCWAG00000007805) #26	RFXANK (ENSCWAG00000020046) #27	BORCS8 (ENSCWAG00000019997) #28	MEF2B (ENSCWAG00000019951) #29	TMEM161A (ENSCWAG00000019820) #30	SLC25A42 (ENSCWAG00000019779) #31	ARMC6 (ENSCWAG00000019757) #32	SUGP2 (ENSCWAG00000019735) #33	HOMER3 (ENSCWAG00000019671) #34	DDX49 (ENSCWAG00000019644) #35	COPE (ENSCWAG00000019578) #36	CERS1 (ENSCWAG00000019515) #37	GDF1 (ENSCWAG00000019490)	UPF1 (ENSCWAG00000019458)	COMP (ENSCWAG00000019235)	CRTC1 (ENSCWAG00000019030)	KLHL26 (ENSCWAG00000018976)	TMEM59L (ENSCWAG00000018953)	CRLF1 (ENSCWAG00000018917)	ENSCWAG00000018899	REX1BD (ENSCWAG00000018868)	UBA52 (ENSCWAG00000018816)	KXD1 (ENSCWAG00000018851)
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00940000153593.c.a	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.b
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000000719.g #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.b	ENSGT00530000064192
Beluga whale	MODERN SPECIES	27	ENSDLEG00000009372 #18	TSSK6 (ENSDLEG00000009362) #19	GATAD2A (ENSDLEG00000009307) #20	MAU2 (ENSDLEG00000009190) #21	SUGP1 (ENSDLEG00000009158) #22	TM6SF2 (ENSDLEG00000009148) #23	HAPLN4 (ENSDLEG00000006247) #24	NCAN (ENSDLEG00000006241) #25	ENSDLEG00000006238 #26	RFXANK (ENSDLEG00000006230) #27	ENSDLEG00000006226	MEF2B (ENSDLEG00000006219) #29	TMEM161A (ENSDLEG00000006213) #30	SLC25A42 (ENSDLEG00000006206) #31	ARMC6 (ENSDLEG00000006199) #32	SUGP2 (ENSDLEG00000006190) #33	HOMER3 (ENSDLEG00000006185) #34	DDX49 (ENSDLEG00000006176) #35	COPE (ENSDLEG00000006169) #36	CERS1 (ENSDLEG00000006163) #37	GDF1 (ENSDLEG00000006157)	UPF1 (ENSDLEG00000006145)	COMP (ENSDLEG00000006134)	CRTC1 (ENSDLEG00000006096)	KLHL26 (ENSDLEG00000006086)	TMEM59L (ENSDLEG00000006084)	CRLF1 (ENSDLEG00000006067)	ENSDLEG00000006057	REX1BD (ENSDLEG00000006050)	UBA52 (ENSDLEG00000006044)	KXD1 (ENSDLEG00000006030)
Narwhal	MODERN SPECIES	298	ENSMMNG00015006145 #18	TSSK6 (ENSMMNG00015006158) #19	GATAD2A (ENSMMNG00015006177) #20	MAU2 (ENSMMNG00015006228) #21	SUGP1 (ENSMMNG00015006270) #22	TM6SF2 (ENSMMNG00015006300) #23	HAPLN4 (ENSMMNG00015006325) #24	NCAN (ENSMMNG00015006441) #25	ENSMMNG00015006667 #26	RFXANK (ENSMMNG00015006700) #27	BORCS8 (ENSMMNG00015006726) #28	MEF2B (ENSMMNG00015006749) #29	TMEM161A (ENSMMNG00015006783) #30	SLC25A42 (ENSMMNG00015006831) #31	ARMC6 (ENSMMNG00015006856) #32	SUGP2 (ENSMMNG00015006879) #33	HOMER3 (ENSMMNG00015006915) #34	DDX49 (ENSMMNG00015006955) #35	COPE (ENSMMNG00015007007) #36	CERS1 (ENSMMNG00015007051) #37	GDF1 (ENSMMNG00015007086)	UPF1 (ENSMMNG00015007103)	COMP (ENSMMNG00015007143)	CRTC1 (ENSMMNG00015007220)	KLHL26 (ENSMMNG00015007349)	TMEM59L (ENSMMNG00015007375)	CRLF1 (ENSMMNG00015007421)	REX1BD (ENSMMNG00015007469)	ENSMMNG00015007512	KXD1 (ENSMMNG00015007547)	FKBP8 (ENSMMNG00015007578)
Vaquita	MODERN SPECIES	14	CILP2 (ENSPSNG00000000993) #16	YJEFN3 (ENSPSNG00000001047) #17	TSSK6 (ENSPSNG00000001081) #19	GATAD2A (ENSPSNG00000001112) #20	MAU2 (ENSPSNG00000001203) #21	SUGP1 (ENSPSNG00000001311) #22	TM6SF2 (ENSPSNG00000001343) #23	HAPLN4 (ENSPSNG00000001367) #24	NCAN (ENSPSNG00000001532) #25	NR2C2AP (ENSPSNG00000001752) #26	RFXANK (ENSPSNG00000001779) #27	MEF2B (ENSPSNG00000001853) #29	TMEM161A (ENSPSNG00000001898) #30	SLC25A42 (ENSPSNG00000001921) #31	ARMC6 (ENSPSNG00000001939) #32	SUGP2 (ENSPSNG00000001966) #33	HOMER3 (ENSPSNG00000002016) #34	DDX49 (ENSPSNG00000002062) #35	COPE (ENSPSNG00000002124) #36	CERS1 (ENSPSNG00000002156) #37	GDF1 (ENSPSNG00000002175)	UPF1 (ENSPSNG00000002213)	COMP (ENSPSNG00000002298)	CRTC1 (ENSPSNG00000002462)	KLHL26 (ENSPSNG00000002575)	TMEM59L (ENSPSNG00000002614)	CRLF1 (ENSPSNG00000002653)	UBA52 (ENSPSNG00000002675)	REX1BD (ENSPSNG00000002705)	ENSPSNG00000002729	KXD1 (ENSPSNG00000002749)
Dolphin	MODERN SPECIES	4549															ARMC6 (ENSTTRG00000006131) #32	SUGP2 (ENSTTRG00000006138) #33
Sperm whale	MODERN SPECIES	1144																ENSPCTG00005020795 #33
Blue whale	MODERN SPECIES	14	YJEFN3 (ENSBMSG00010002588) #17	TSSK6 (ENSBMSG00010002611) #19	GATAD2A (ENSBMSG00010002620) #20	MAU2 (ENSBMSG00010002666) #21	SUGP1 (ENSBMSG00010002719) #22	TM6SF2 (ENSBMSG00010002725) #23	HAPLN4 (ENSBMSG00010002737) #24	NCAN (ENSBMSG00010002745) #25	NR2C2AP (ENSBMSG00010002762) #26	RFXANK (ENSBMSG00010002771) #27	ENSBMSG00010002783	MEF2B (ENSBMSG00010003849) #29	TMEM161A (ENSBMSG00010003877) #30	SLC25A42 (ENSBMSG00010003900) #31	ARMC6 (ENSBMSG00010003914) #32	SUGP2 (ENSBMSG00010003931) #33	HOMER3 (ENSBMSG00010003958) #34	DDX49 (ENSBMSG00010004039) #35	COPE (ENSBMSG00010004064) #36	CERS1 (ENSBMSG00010004105) #37	GDF1 (ENSBMSG00010004120)	UPF1 (ENSBMSG00010004141)	COMP (ENSBMSG00010004199)	CRTC1 (ENSBMSG00010004257)	KLHL26 (ENSBMSG00010004285)	TMEM59L (ENSBMSG00010004290)	CRLF1 (ENSBMSG00010004297)	REX1BD (ENSBMSG00010004317)	UBA52 (ENSBMSG00010004333)	KXD1 (ENSBMSG00010004344)	FKBP8 (ENSBMSG00010004359)
Pecora	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Yarkand deer	MODERN SPECIES	32	NDUFA13 (ENSCHYG00000012188) #18	TSSK6 (ENSCHYG00000012255) #19	GATAD2A (ENSCHYG00000012277) #20	MAU2 (ENSCHYG00000012428) #21	SUGP1 (ENSCHYG00000012677) #22	TM6SF2 (ENSCHYG00000012851) #23	HAPLN4 (ENSCHYG00000012901) #24	NCAN (ENSCHYG00000012951) #25	NR2C2AP (ENSCHYG00000013015) #26	RFXANK (ENSCHYG00000013090) #27	BORCS8 (ENSCHYG00000013210) #28	MEF2B (ENSCHYG00000013347) #29	TMEM161A (ENSCHYG00000013806) #30	SLC25A42 (ENSCHYG00000014137) #31	ARMC6 (ENSCHYG00000014214) #32	SUGP2 (ENSCHYG00000014360) #33	ENSCHYG00000014561 #34	DDX49 (ENSCHYG00000015448) #35	CERS1 (ENSCHYG00000015529) #37	GDF1 (ENSCHYG00000015658)	UPF1 (ENSCHYG00000015773)	COMP (ENSCHYG00000016040)	CRTC1 (ENSCHYG00000016471)	KLHL26 (ENSCHYG00000017020)	TMEM59L (ENSCHYG00000017122)	CRLF1 (ENSCHYG00000017284)	REX1BD (ENSCHYG00000017438)	UBA52 (ENSCHYG00000017560)	KXD1 (ENSCHYG00000017621)	FKBP8 (ENSCHYG00000017721)	ELL (ENSCHYG00000017915)
Percora_a	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Siberian musk deer	MODERN SPECIES	1231	TSSK6 (ENSMMSG00000017779) #19	ENSMMSG00000017748	GATAD2A (ENSMMSG00000017683) #20	MAU2 (ENSMMSG00000017598) #21	SUGP1 (ENSMMSG00000017541) #22	TM6SF2 (ENSMMSG00000017487) #23	HAPLN4 (ENSMMSG00000017463) #24	NCAN (ENSMMSG00000017015) #25	NR2C2AP (ENSMMSG00000016963) #26	RFXANK (ENSMMSG00000016859) #27	BORCS8 (ENSMMSG00000016823) #28	MEF2B (ENSMMSG00000016211) #29	TMEM161A (ENSMMSG00000016113) #30	SLC25A42 (ENSMMSG00000022673) #31	ARMC6 (ENSMMSG00000022659) #32	SUGP2 (ENSMMSG00000022643) #33	HOMER3 (ENSMMSG00000022598) #34	DDX49 (ENSMMSG00000022565) #35	COPE (ENSMMSG00000022538) #36	CERS1 (ENSMMSG00000022516) #37	GDF1 (ENSMMSG00000022528)	UPF1 (ENSMMSG00000022501)	COMP (ENSMMSG00000022327)	CRTC1 (ENSMMSG00000022161)	KLHL26 (ENSMMSG00000022113)	TMEM59L (ENSMMSG00000022096)	CRLF1 (ENSMMSG00000022062)	REX1BD (ENSMMSG00000022031)	ENSMMSG00000022005	KXD1 (ENSMMSG00000021990)	FKBP8 (ENSMMSG00000021969)
Bovidae	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.q.b
Caprinae	ANCESTRAL SPECIES	32	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.q.b
Goat	MODERN SPECIES	26	NDUFA13 (ENSCHIG00000005106) #18	TSSK6 (ENSCHIG00000012857) #19	GATAD2A (ENSCHIG00000022449) #20	MAU2 (ENSCHIG00000018574) #21	SUGP1 (ENSCHIG00000024169) #22	TM6SF2 (ENSCHIG00000009497) #23	HAPLN4 (ENSCHIG00000017398) #24	NCAN (ENSCHIG00000023523) #25	NR2C2AP (ENSCHIG00000026754) #26	RFXANK (ENSCHIG00000009697) #27	BORCS8 (ENSCHIG00000023514) #28	MEF2B (ENSCHIG00000009022) #29	TMEM161A (ENSCHIG00000015703) #30	SLC25A42 (ENSCHIG00000017224) #31	ARMC6 (ENSCHIG00000022745) #32	SUGP2 (ENSCHIG00000000571) #33	HOMER3 (ENSCHIG00000013425) #34	DDX49 (ENSCHIG00000019910) #35	COPE (ENSCHIG00000019197) #36	CERS1 (ENSCHIG00000021209) #37	GDF1 (ENSCHIG00000026655)	UPF1 (ENSCHIG00000011018)	COMP (ENSCHIG00000015152)	CRTC1 (ENSCHIG00000020510)	KLHL26 (ENSCHIG00000009198)	TMEM59L (ENSCHIG00000001269)	CRLF1 (ENSCHIG00000014402)	REX1BD (ENSCHIG00000025942)	ENSCHIG00000024401	KXD1 (ENSCHIG00000027154)	FKBP8 (ENSCHIG00000013446)
Rambouillet Sheep	MODERN SPECIES	21	YJEFN3 (ENSOARG00020019633) #17	NDUFA13 (ENSOARG00020019709) #18	TSSK6 (ENSOARG00020019749) #19	GATAD2A (ENSOARG00020019767) #20	MAU2 (ENSOARG00020019838) #21	SUGP1 (ENSOARG00020019993) #22	TM6SF2 (ENSOARG00020020089) #23	HAPLN4 (ENSOARG00020020166) #24	NR2C2AP (ENSOARG00020020240) #26	RFXANK (ENSOARG00020020308) #27	BORCS8 (ENSOARG00020020354) #28	MEF2B (ENSOARG00020020398) #29	TMEM161A (ENSOARG00020020857) #30	SLC25A42 (ENSOARG00020020909) #31	ARMC6 (ENSOARG00020020947) #32	SUGP2 (ENSOARG00020021040) #33	ENSOARG00020021129 #34	DDX49 (ENSOARG00020021548) #35	CERS1 (ENSOARG00020021615) #37	UPF1 (ENSOARG00020003352)	COMP (ENSOARG00020003569)	CRTC1 (ENSOARG00020003966)	KLHL26 (ENSOARG00020004115)	TMEM59L (ENSOARG00020004177)	CRLF1 (ENSOARG00020004211)	REX1BD (ENSOARG00020004269)	UBA52 (ENSOARG00020004308)	KXD1 (ENSOARG00020004349)	FKBP8 (ENSOARG00020004369)	ELL (ENSOARG00020004406)	ISYNA1 (ENSOARG00020004475)
Bovinae	ANCESTRAL SPECIES	34	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.q.b
Bos	ANCESTRAL SPECIES	34	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192.s	ENSGT00940000156705.q.b
Bos_a	ANCESTRAL SPECIES	29	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192.s	ENSGT00940000156705.q.b	ENSGT00940000155914
Domestic yak	MODERN SPECIES	27	TSSK6 (ENSBGRG00000001976) #19	GATAD2A (ENSBGRG00000001936) #20	ENSBGRG00000001911	MAU2 (ENSBGRG00000001879) #21	SUGP1 (ENSBGRG00000001817) #22	TM6SF2 (ENSBGRG00000001786) #23	HAPLN4 (ENSBGRG00000001768) #24	NCAN (ENSBGRG00000001688) #25	NR2C2AP (ENSBGRG00000001646) #26	RFXANK (ENSBGRG00000001549) #27	ENSBGRG00000001503 #28	MEF2B (ENSBGRG00000001435) #29	TMEM161A (ENSBGRG00000001322) #30	SLC25A42 (ENSBGRG00000001293) #31	ARMC6 (ENSBGRG00000001271) #32	SUGP2 (ENSBGRG00000001227) #33	ENSBGRG00000001213 #34	HOMER3 (ENSBGRG00000001163) #34	DDX49 (ENSBGRG00000001122) #35	COPE (ENSBGRG00000001045) #36	CERS1 (ENSBGRG00000000977) #37	UPF1 (ENSBGRG00000000885)	COMP (ENSBGRG00000000772)	CRTC1 (ENSBGRG00000000542)	KLHL26 (ENSBGRG00000000466)	TMEM59L (ENSBGRG00000000427)	CRLF1 (ENSBGRG00000000399)	ENSBGRG00000026408	ENSBGRG00000026400	ENSBGRG00000026397	ENSBGRG00000026382
Wild yak	MODERN SPECIES	984					SUGP1 (ENSBMUG00000014735) #22	TM6SF2 (ENSBMUG00000014742) #23	ENSBMUG00000014766 #24	NCAN (ENSBMUG00000014781) #25	NR2C2AP (ENSBMUG00000014819) #26	RFXANK (ENSBMUG00000014864) #27	BORCS8 (ENSBMUG00000014902) #28	MEF2B (ENSBMUG00000014926) #29	TMEM161A (ENSBMUG00000014965) #30	SLC25A42 (ENSBMUG00000014988) #31	ARMC6 (ENSBMUG00000015012) #32	SUGP2 (ENSBMUG00000015048) #33	HOMER3 (ENSBMUG00000015101) #34	DDX49 (ENSBMUG00000015132) #35	COPE (ENSBMUG00000015145) #36	CERS1 (ENSBMUG00000015159) #37	UPF1 (ENSBMUG00000015177)	COMP (ENSBMUG00000015225)	CRTC1 (ENSBMUG00000015292)	KLHL26 (ENSBMUG00000015350)	TMEM59L (ENSBMUG00000015381)	CRLF1 (ENSBMUG00000015427)	REX1BD (ENSBMUG00000015467)	UBA52 (ENSBMUG00000015499)	KXD1 (ENSBMUG00000015517)	ENSBMUG00000015586	ELL (ENSBMUG00000015621)
Bos_b	ANCESTRAL SPECIES	36	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.b	ENSGT00530000064192.s	ENSGT00940000156705.q.b
Hybrid Bos Indicus	MODERN SPECIES	26	PBX4 (ENSBIXG00005011533) #15	CILP2 (ENSBIXG00005011569) #16	GATAD2A (ENSBIXG00005011721) #20	MAU2 (ENSBIXG00005011825) #21	SUGP1 (ENSBIXG00005011882) #22	TM6SF2 (ENSBIXG00005011902) #23	HAPLN4 (ENSBIXG00005006424) #24	NCAN (ENSBIXG00005011939) #25	NR2C2AP (ENSBIXG00005011976) #26	RFXANK (ENSBIXG00005012032) #27	BORCS8 (ENSBIXG00005012065) #28	MEF2B (ENSBIXG00005012139) #29	TMEM161A (ENSBIXG00005007436) #30	SLC25A42 (ENSBIXG00005012191) #31	ARMC6 (ENSBIXG00005012220) #32	SUGP2 (ENSBIXG00005001278) #33	HOMER3 (ENSBIXG00005000373) #34	DDX49 (ENSBIXG00005012358) #35	COPE (ENSBIXG00005012672) #36	UPF1 (ENSBIXG00005012808)	COMP (ENSBIXG00005012859)	CRTC1 (ENSBIXG00005013032)	KLHL26 (ENSBIXG00005001500)	TMEM59L (ENSBIXG00005013127)	CRLF1 (ENSBIXG00005001505)	REX1BD (ENSBIXG00005013181)	ENSBIXG00005013215	FKBP8 (ENSBIXG00005001526)	ELL (ENSBIXG00005006340)	ISYNA1 (ENSBIXG00005007444)	SSBP4 (ENSBIXG00005001619)
Cow	MODERN SPECIES	26	NDUFA13 (ENSBTAG00000007812) #18	TSSK6 (ENSBTAG00000006649) #19	GATAD2A (ENSBTAG00000003034) #20	MAU2 (ENSBTAG00000006124) #21	SUGP1 (ENSBTAG00000006116) #22	TM6SF2 (ENSBTAG00000016042) #23	HAPLN4 (ENSBTAG00000001765) #24	NCAN (ENSBTAG00000001764) #25	NR2C2AP (ENSBTAG00000001763) #26	RFXANK (ENSBTAG00000001762) #27	BORCS8 (ENSBTAG00000025817) #28	MEF2B (ENSBTAG00000001818) #29	TMEM161A (ENSBTAG00000001817) #30	SLC25A42 (ENSBTAG00000001816) #31	ARMC6 (ENSBTAG00000013291) #32	SUGP2 (ENSBTAG00000013288) #33	HOMER3 (ENSBTAG00000000813) #34	DDX49 (ENSBTAG00000000811) #35	COPE (ENSBTAG00000000810) #36	CERS1 (ENSBTAG00000037729) #37	GDF1 (ENSBTAG00000020923)	UPF1 (ENSBTAG00000020922)	COMP (ENSBTAG00000004630)	CRTC1 (ENSBTAG00000010379)	KLHL26 (ENSBTAG00000014114)	TMEM59L (ENSBTAG00000007698)	CRLF1 (ENSBTAG00000007741)	REX1BD (ENSBTAG00000007739)	UBA52 (ENSBTAG00000007737)	KXD1 (ENSBTAG00000010545)	FKBP8 (ENSBTAG00000016264)
American bison	MODERN SPECIES	3165	YJEFN3 (ENSBBBG00000015957) #17	NDUFA13 (ENSBBBG00000015950) #18	TSSK6 (ENSBBBG00000015942) #19	GATAD2A (ENSBBBG00000015939) #20	MAU2 (ENSBBBG00000003961) #21	SUGP1 (ENSBBBG00000015892) #22	TM6SF2 (ENSBBBG00000015869) #23	HAPLN4 (ENSBBBG00000015855) #24	NCAN (ENSBBBG00000003940) #25	NR2C2AP (ENSBBBG00000003931) #26	RFXANK (ENSBBBG00000015745) #27	ENSBBBG00000015701 #28	MEF2B (ENSBBBG00000007138) #29	TMEM161A (ENSBBBG00000007455) #30	ARMC6 (ENSBBBG00000015629) #32	SUGP2 (ENSBBBG00000003426) #33	ENSBBBG00000003456 #34	ENSBBBG00000003467 #34	DDX49 (ENSBBBG00000015616) #35	COPE (ENSBBBG00000015595) #36	CERS1 (ENSBBBG00000015545) #37	UPF1 (ENSBBBG00000003867)	COMP (ENSBBBG00000002699)	CRTC1 (ENSBBBG00000015471)	ENSBBBG00000015461	TMEM59L (ENSBBBG00000015452)	CRLF1 (ENSBBBG00000003846)	ENSBBBG00000015406	ENSBBBG00000002734	KXD1 (ENSBBBG00000015390)	ENSBBBG00000015360
Camelidae	ANCESTRAL SPECIES	64	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00530000064192.r	ENSGT00940000153593.c.a	ENSGT00530000064192.q	ENSGT00940000156705
Arabian camel	MODERN SPECIES	14	YJEFN3 (ENSCDRG00005011508) #17	TSSK6 (ENSCDRG00005011623) #19	GATAD2A (ENSCDRG00005011647) #20	MAU2 (ENSCDRG00005011821) #21	SUGP1 (ENSCDRG00005011946) #22	TM6SF2 (ENSCDRG00005012037) #23	HAPLN4 (ENSCDRG00005012163) #24	NCAN (ENSCDRG00005012212) #25	NR2C2AP (ENSCDRG00005012299) #26	RFXANK (ENSCDRG00005012616) #27	ENSCDRG00005012691 #28	MEF2B (ENSCDRG00005012755) #29	TMEM161A (ENSCDRG00005012779) #30	SLC25A42 (ENSCDRG00005012927) #31	ARMC6 (ENSCDRG00005012979) #32	SUGP2 (ENSCDRG00005013031) #33	HOMER3 (ENSCDRG00005013258) #34	DDX49 (ENSCDRG00005013373) #35	COPE (ENSCDRG00005013441) #36	CERS1 (ENSCDRG00005013600) #37	UPF1 (ENSCDRG00005008931)	COMP (ENSCDRG00005009080)	CRTC1 (ENSCDRG00005009334)	KLHL26 (ENSCDRG00005009944)	TMEM59L (ENSCDRG00005009996)	CRLF1 (ENSCDRG00005010053)	REX1BD (ENSCDRG00005010167)	UBA52 (ENSCDRG00005010272)	ENSCDRG00005010351	FKBP8 (ENSCDRG00005010447)	ELL (ENSCDRG00005010516)
Alpaca	MODERN SPECIES	1235															ENSVPAG00000006946 #32	SUGP2 (ENSVPAG00000006943) #33
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Ursus	ANCESTRAL SPECIES	5	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Polar bear	MODERN SPECIES	255	ENSUMAG00000006179 #17	NDUFA13 (ENSUMAG00000006183) #18	TSSK6 (ENSUMAG00000006185) #19	GATAD2A (ENSUMAG00000006192) #20	MAU2 (ENSUMAG00000006229) #21	SUGP1 (ENSUMAG00000006358) #22	TM6SF2 (ENSUMAG00000006368) #23	NCAN (ENSUMAG00000006378) #25	NR2C2AP (ENSUMAG00000006411) #26	RFXANK (ENSUMAG00000006419) #27	BORCS8 (ENSUMAG00000006425) #28	MEF2B (ENSUMAG00000006437) #29	TMEM161A (ENSUMAG00000006455) #30	SLC25A42 (ENSUMAG00000006458) #31	ARMC6 (ENSUMAG00000006462) #32	SUGP2 (ENSUMAG00000006467) #33	HOMER3 (ENSUMAG00000006477) #34	DDX49 (ENSUMAG00000006489) #35	COPE (ENSUMAG00000006505) #36	UPF1 (ENSUMAG00000006652)	COMP (ENSUMAG00000007436)	CRTC1 (ENSUMAG00000008860)	ENSUMAG00000008937	ENSUMAG00000008945	UBA52 (ENSUMAG00000008953)	KXD1 (ENSUMAG00000008955)	FKBP8 (ENSUMAG00000008964)	ELL (ENSUMAG00000008994)	ENSUMAG00000009000	LRRC25 (ENSUMAG00000009005)	GDF15 (ENSUMAG00000009006)
American black bear	MODERN SPECIES	387															ARMC6 (ENSUAMG00000007084) #32	SUGP2 (ENSUAMG00000007085) #33	HOMER3 (ENSUAMG00000007087) #34	DDX49 (ENSUAMG00000007088) #35	COPE (ENSUAMG00000007091) #36
Giant Panda	MODERN SPECIES	14	NDUFA13 (ENSAMEG00000011893) #18	TSSK6 (ENSAMEG00000019351) #19	GATAD2A (ENSAMEG00000011882) #20	MAU2 (ENSAMEG00000011868) #21	SUGP1 (ENSAMEG00000011838) #22	TM6SF2 (ENSAMEG00000011811) #23	HAPLN4 (ENSAMEG00000027731) #24	NCAN (ENSAMEG00000011734) #25	NR2C2AP (ENSAMEG00000011727) #26	RFXANK (ENSAMEG00000011703) #27	BORCS8 (ENSAMEG00000011698) #28	MEF2B (ENSAMEG00000011682) #29	TMEM161A (ENSAMEG00000011655) #30	SLC25A42 (ENSAMEG00000027218) #31	ARMC6 (ENSAMEG00000011621) #32	SUGP2 (ENSAMEG00000011613) #33	HOMER3 (ENSAMEG00000011595) #34	DDX49 (ENSAMEG00000011566) #35	COPE (ENSAMEG00000011524) #36	CERS1 (ENSAMEG00000011517) #37	UPF1 (ENSAMEG00000011474)	COMP (ENSAMEG00000011419)	CRTC1 (ENSAMEG00000011390)	KLHL26 (ENSAMEG00000011385)	TMEM59L (ENSAMEG00000011379)	CRLF1 (ENSAMEG00000011375)	REX1BD (ENSAMEG00000011371)	UBA52 (ENSAMEG00000011356)	ENSAMEG00000011348	ENSAMEG00000011325	ELL (ENSAMEG00000011276)
Mustelinae	ANCESTRAL SPECIES	10	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
American mink	MODERN SPECIES	58	NDUFA13 (ENSNVIG00000020832) #18	TSSK6 (ENSNVIG00000020829) #19	GATAD2A (ENSNVIG00000020782) #20	MAU2 (ENSNVIG00000020762) #21	SUGP1 (ENSNVIG00000020747) #22	TM6SF2 (ENSNVIG00000020733) #23	HAPLN4 (ENSNVIG00000020713) #24	NCAN (ENSNVIG00000020377) #25	NR2CA (ENSNVIG00000020303) #26	RFXANK (ENSNVIG00000020264) #27	BORCS8 (ENSNVIG00000020221) #28	MEF2B (ENSNVIG00000020206) #29	TMEM161A (ENSNVIG00000020180) #30	S2542 (ENSNVIG00000020166) #31	ARMC6 (ENSNVIG00000020143) #32	SUGP2 (ENSNVIG00000020116) #33	HOMER3 (ENSNVIG00000020032) #34	DDX49 (ENSNVIG00000020003) #35	COPE (ENSNVIG00000019958) #36	CERS1 (ENSNVIG00000019939) #37	GDF1 (ENSNVIG00000019930)	UPF1 (ENSNVIG00000019863)	COMP (ENSNVIG00000018415)	CRTC1 (ENSNVIG00000018294)	KLHL26 (ENSNVIG00000018276)	TMEM59L (ENSNVIG00000018259)	CRLF1 (ENSNVIG00000018244)	REX1BD (ENSNVIG00000018234)	UBA52 (ENSNVIG00000018210)	KXD1 (ENSNVIG00000018138)	FKBP8 (ENSNVIG00000018099)
Ferret	MODERN SPECIES	238	CILP2 (ENSMPUG00000015383) #16	YJEFN3 (ENSMPUG00000015390) #17	TSSK6 (ENSMPUG00000019662) #19	GATAD2A (ENSMPUG00000015399) #20	MAU2 (ENSMPUG00000015402) #21	SUGP1 (ENSMPUG00000015404) #22	TM6SF2 (ENSMPUG00000015407) #23	HAPLN4 (ENSMPUG00000015424) #24	NCAN (ENSMPUG00000015433) #25	NR2C2AP (ENSMPUG00000015462) #26	RFXANK (ENSMPUG00000015469) #27	BORCS8 (ENSMPUG00000015471) #28	MEF2B (ENSMPUG00000015473) #29	TMEM161A (ENSMPUG00000015475) #30	SLC25A42 (ENSMPUG00000015477) #31	SUGP2 (ENSMPUG00000015478) #33	HOMER3 (ENSMPUG00000015484) #34	DDX49 (ENSMPUG00000015485) #35	COPE (ENSMPUG00000015486) #36	CERS1 (ENSMPUG00000015497) #37	GDF1 (ENSMPUG00000015514)	UPF1 (ENSMPUG00000015516)	COMP (ENSMPUG00000015518)	CRTC1 (ENSMPUG00000015520)	KLHL26 (ENSMPUG00000015521)	TMEM59L (ENSMPUG00000015522)	CRLF1 (ENSMPUG00000015524)	REX1BD (ENSMPUG00000015526)	ENSMPUG00000015527	KXD1 (ENSMPUG00000015537)	FKBP8 (ENSMPUG00000015541)
Canidae	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478.b #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478.b #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Dog	MODERN SPECIES	12	NDUFA13 (ENSCAFG00845014336) #18	TSSK6 (ENSCAFG00845014349) #19	GATAD2A (ENSCAFG00845014383) #20	MAU2 (ENSCAFG00845014470) #21	SUGP1 (ENSCAFG00845014514) #22	TM6SF2 (ENSCAFG00845014561) #23	HAPLN4 (ENSCAFG00845014588) #24	NCAN (ENSCAFG00845014625) #25	RFXANK (ENSCAFG00845014775) #27	NR2C2AP (ENSCAFG00845018085) #26	BORCS8 (ENSCAFG00845018185) #28	MEF2B (ENSCAFG00845018253) #29	TMEM161A (ENSCAFG00845018423) #30	SLC25A42 (ENSCAFG00845018653) #31	ARMC6 (ENSCAFG00845018765) #32	SUGP2 (ENSCAFG00845018888) #33	HOMER3 (ENSCAFG00845019115) #34	DDX49 (ENSCAFG00845019266) #35	COPE (ENSCAFG00845019400) #36	CERS1 (ENSCAFG00845019662) #37	GDF1 (ENSCAFG00845019828)	UPF1 (ENSCAFG00845019866)	COMP (ENSCAFG00845020025)	ENSCAFG00845020236	CRTC1 (ENSCAFG00845020362)	KLHL26 (ENSCAFG00845020669)	CRLF1 (ENSCAFG00845020775)	ENSCAFG00845020838	UBA52 (ENSCAFG00845020932)	KXD1 (ENSCAFG00845021012)	FKBP8 (ENSCAFG00845021109)
Dingo	MODERN SPECIES	112	NDUFA13 (ENSCAFG00020012721) #18	TSSK6 (ENSCAFG00020012717) #19	GATAD2A (ENSCAFG00020012715) #20	MAU2 (ENSCAFG00020012543) #21	SUGP1 (ENSCAFG00020012508) #22	TM6SF2 (ENSCAFG00020012504) #23	HAPLN4 (ENSCAFG00020012500) #24	NCAN (ENSCAFG00020012454) #25	NR2C2AP (ENSCAFG00020012443) #26	RFXANK (ENSCAFG00020012437) #27	BORCS8 (ENSCAFG00020012435) #28	MEF2B (ENSCAFG00020012425) #29	TMEM161A (ENSCAFG00020012412) #30	SLC25A42 (ENSCAFG00020012408) #31	ARMC6 (ENSCAFG00020012404) #32	SUGP2 (ENSCAFG00020012392) #33	HOMER3 (ENSCAFG00020012389) #34	DDX49 (ENSCAFG00020012375) #35	COPE (ENSCAFG00020012363) #36	CERS1 (ENSCAFG00020012351) #37	GDF1 (ENSCAFG00020012350)	UPF1 (ENSCAFG00020012347)	COMP (ENSCAFG00020012328)	CRTC1 (ENSCAFG00020012293)	KLHL26 (ENSCAFG00020012290)	TMEM59L (ENSCAFG00020012289)	CRLF1 (ENSCAFG00020012282)	REX1BD (ENSCAFG00020012279)	ENSCAFG00020012276	ENSCAFG00020012269	KXD1 (ENSCAFG00020012268)
Red fox	MODERN SPECIES	5	NDUFA13 (ENSVVUG00000007513) #18	TSSK6 (ENSVVUG00000007516) #19	GATAD2A (ENSVVUG00000007522) #20	MAU2 (ENSVVUG00000007527) #21	SUGP1 (ENSVVUG00000007569) #22	TM6SF2 (ENSVVUG00000007584) #23	HAPLN4 (ENSVVUG00000007594) #24	NCAN (ENSVVUG00000007597) #25	NR2C2AP (ENSVVUG00000007609) #26	RFXANK (ENSVVUG00000007633) #27	BORCS8 (ENSVVUG00000007667) #28	MEF2B (ENSVVUG00000007672) #29	TMEM161A (ENSVVUG00000007683) #30	SLC25A42 (ENSVVUG00000007728) #31	ARMC6 (ENSVVUG00000007731) #32	SUGP2 (ENSVVUG00000007744) #33	HOMER3 (ENSVVUG00000007758) #34	DDX49 (ENSVVUG00000007767) #35	ENSVVUG00000007777 #36	CERS1 (ENSVVUG00000007783) #37	UPF1 (ENSVVUG00000007797)	ENSVVUG00000007818	CRTC1 (ENSVVUG00000007833)	KLHL26 (ENSVVUG00000007964)	TMEM59L (ENSVVUG00000007974)	CRLF1 (ENSVVUG00000007976)	REX1BD (ENSVVUG00000007980)	UBA52 (ENSVVUG00000007989)	FKBP8 (ENSVVUG00000008005)	ELL (ENSVVUG00000008025)	ISYNA1 (ENSVVUG00000008037)
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Tiger	MODERN SPECIES	281	YJEFN3 (ENSPTIG00000013321) #17	NDUFA13 (ENSPTIG00000013303) #18	TSSK6 (ENSPTIG00000006514) #19	GATAD2A (ENSPTIG00000013272) #20	MAU2 (ENSPTIG00000013179) #21	SUGP1 (ENSPTIG00000013061) #22	TM6SF2 (ENSPTIG00000013026) #23	HAPLN4 (ENSPTIG00000013017) #24	NR2C2AP (ENSPTIG00000012962) #26	RFXANK (ENSPTIG00000012655) #27	BORCS8 (ENSPTIG00000012610) #28	MEF2B (ENSPTIG00000012475) #29	TMEM161A (ENSPTIG00000012395) #30	SLC25A42 (ENSPTIG00000012354) #31	ARMC6 (ENSPTIG00000012073) #32	SUGP2 (ENSPTIG00000012003) #33	HOMER3 (ENSPTIG00000011533) #34	DDX49 (ENSPTIG00000011259) #35	COPE (ENSPTIG00000010957) #36	CERS1 (ENSPTIG00000010849) #37	GDF1 (ENSPTIG00000010670)	UPF1 (ENSPTIG00000010159)	ENSPTIG00000010043	CRTC1 (ENSPTIG00000009427)	ENSPTIG00000009351	ENSPTIG00000009230	TMEM59L (ENSPTIG00000009187)	CRLF1 (ENSPTIG00000009041)	ENSPTIG00000008919	UBA52 (ENSPTIG00000008713)	KXD1 (ENSPTIG00000008232)
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
lion	MODERN SPECIES	2	NDUFA13 (ENSPLOG00000001502) #18	TSSK6 (ENSPLOG00000001493) #19	GATAD2A (ENSPLOG00000001463) #20	MAU2 (ENSPLOG00000001424) #21	SUGP1 (ENSPLOG00000001334) #22	TM6SF2 (ENSPLOG00000001308) #23	HAPLN4 (ENSPLOG00000001286) #24	NCAN (ENSPLOG00000001120) #25	ENSPLOG00000000980 #26	RFXANK (ENSPLOG00000000919) #27	BORCS8 (ENSPLOG00000000887) #28	MEF2B (ENSPLOG00000000863) #29	TMEM161A (ENSPLOG00000000833) #30	SLC25A42 (ENSPLOG00000000808) #31	ARMC6 (ENSPLOG00000000792) #32	SUGP2 (ENSPLOG00000000772) #33	HOMER3 (ENSPLOG00000000722) #34	DDX49 (ENSPLOG00000000667) #35	COPE (ENSPLOG00000000628) #36	CERS1 (ENSPLOG00000000599) #37	GDF1 (ENSPLOG00000000580)	UPF1 (ENSPLOG00000000562)	COMP (ENSPLOG00000000492)	CRTC1 (ENSPLOG00000000409)	KLHL26 (ENSPLOG00000000360)	TMEM59L (ENSPLOG00000000339)	CRLF1 (ENSPLOG00000000319)	ENSPLOG00000000303	REX1BD (ENSPLOG00000000289)	UBA52 (ENSPLOG00000000273)	KXD1 (ENSPLOG00000000255)
leopard	MODERN SPECIES	68	YJEFN3 (ENSPPRG00000023619) #17	NDUFA13 (ENSPPRG00000022807) #18	TSSK6 (ENSPPRG00000016235) #19	GATAD2A (ENSPPRG00000000270) #20	MAU2 (ENSPPRG00000000643) #21	SUGP1 (ENSPPRG00000000880) #22	TM6SF2 (ENSPPRG00000001208) #23	HAPLN4 (ENSPPRG00000001581) #24	NR2C2AP (ENSPPRG00000003111) #26	RFXANK (ENSPPRG00000004266) #27	BORCS8 (ENSPPRG00000004580) #28	MEF2B (ENSPPRG00000006317) #29	TMEM161A (ENSPPRG00000008638) #30	SLC25A42 (ENSPPRG00000008936) #31	ARMC6 (ENSPPRG00000009582) #32	SUGP2 (ENSPPRG00000010924) #33	HOMER3 (ENSPPRG00000013004) #34	DDX49 (ENSPPRG00000013274) #35	COPE (ENSPPRG00000019668) #36	CERS1 (ENSPPRG00000021419) #37	GDF1 (ENSPPRG00000024438)	UPF1 (ENSPPRG00000023470)	COMP (ENSPPRG00000000723)	CRTC1 (ENSPPRG00000001977)	KLHL26 (ENSPPRG00000003359)	TMEM59L (ENSPPRG00000003959)	CRLF1 (ENSPPRG00000004235)	REX1BD (ENSPPRG00000004571)	UBA52 (ENSPPRG00000006788)	KXD1 (ENSPPRG00000007892)	FKBP8 (ENSPPRG00000008402)
Cat	MODERN SPECIES	1	YJEFN3 (ENSFCAG00000014330) #17	NDUFA13 (ENSFCAG00000014329) #18	TSSK6 (ENSFCAG00000014328) #19	GATAD2A (ENSFCAG00000014327) #20	MAU2 (ENSFCAG00000009780) #21	SUGP1 (ENSFCAG00000009779) #22	HAPLN4 (ENSFCAG00000022898) #24	NCAN (ENSFCAG00000008376) #25	NR2C2AP (ENSFCAG00000009777) #26	RFXANK (ENSFCAG00000009775) #27	BORCS8 (ENSFCAG00000047348) #28	MEF2B (ENSFCAG00000009774) #29	TMEM161A (ENSFCAG00000009771) #30	SLC25A42 (ENSFCAG00000009770) #31	ARMC6 (ENSFCAG00000009767) #32	SUGP2 (ENSFCAG00000009765) #33	HOMER3 (ENSFCAG00000009762) #34	DDX49 (ENSFCAG00000009760) #35	CERS1 (ENSFCAG00000023920) #36	UPF1 (ENSFCAG00000009757)	COMP (ENSFCAG00000009754)	CRTC1 (ENSFCAG00000009752)	KLHL26 (ENSFCAG00000042696)	TMEM59L (ENSFCAG00000009749)	CRLF1 (ENSFCAG00000009747)	ENSFCAG00000033106	REX1BD (ENSFCAG00000024240)	UBA52 (ENSFCAG00000009745)	KXD1 (ENSFCAG00000033273)	FKBP8 (ENSFCAG00000009741)	ELL (ENSFCAG00000009739)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Chiroptera	ANCESTRAL SPECIES	44	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Microchiroptera	ANCESTRAL SPECIES	43	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Greater horseshoe bat	MODERN SPECIES	9	NDUFA13 (ENSRFEG00010006692) #18	TSSK6 (ENSRFEG00010006656) #19	GATAD2A (ENSRFEG00010006588) #20	MAU2 (ENSRFEG00010006479) #21	SUGP1 (ENSRFEG00010006391) #22	TM6SF2 (ENSRFEG00010006340) #23	HAPLN4 (ENSRFEG00010006311) #24	NCAN (ENSRFEG00010006275) #25	NR2C2AP (ENSRFEG00010006230) #26	RFXANK (ENSRFEG00010006139) #27	BORCS8 (ENSRFEG00010006052) #28	MEF2B (ENSRFEG00010005974) #29	TMEM161A (ENSRFEG00010005885) #30	SLC25A42 (ENSRFEG00010005823) #31	ARMC6 (ENSRFEG00010005797) #32	SUGP2 (ENSRFEG00010005746) #33	HOMER3 (ENSRFEG00010005693) #34	DDX49 (ENSRFEG00010005585) #35	CERS1 (ENSRFEG00010005439) #37	GDF1 (ENSRFEG00010020888)	UPF1 (ENSRFEG00010020838)	COMP (ENSRFEG00010020665)	CRTC1 (ENSRFEG00010020465)	KLHL26 (ENSRFEG00010020386)	TMEM59L (ENSRFEG00010020368)	CRLF1 (ENSRFEG00010020301)	ENSRFEG00010020261	KXD1 (ENSRFEG00010020232)	FKBP8 (ENSRFEG00010020191)	ELL (ENSRFEG00010020153)	ISYNA1 (ENSRFEG00010020056)
Microbat	MODERN SPECIES	1248	NDUFA13 (ENSMLUG00000017367) #18	TSSK6 (ENSMLUG00000017365) #19	GATAD2A (ENSMLUG00000017364) #20	MAU2 (ENSMLUG00000017362) #21	SUGP1 (ENSMLUG00000017360) #22	TM6SF2 (ENSMLUG00000027634) #23	HAPLN4 (ENSMLUG00000017358) #24	NCAN (ENSMLUG00000017356) #25	NR2C2AP (ENSMLUG00000017355) #26	RFXANK (ENSMLUG00000017354) #27	BORCS8 (ENSMLUG00000025095) #28	MEF2B (ENSMLUG00000003299) #29	TMEM161A (ENSMLUG00000017352) #30	SLC25A42 (ENSMLUG00000012208) #31	ENSMLUG00000012203 #32	SUGP2 (ENSMLUG00000012189) #33	ENSMLUG00000025755	HOMER3 (ENSMLUG00000012170) #34	DDX49 (ENSMLUG00000012159) #35	COPE (ENSMLUG00000012147) #36	ENSMLUG00000026905 #37	ENSMLUG00000012140	UPF1 (ENSMLUG00000012122)	COMP (ENSMLUG00000012249)	CRTC1 (ENSMLUG00000012234)	KLHL26 (ENSMLUG00000003470)	ENSMLUG00000028871	CRLF1 (ENSMLUG00000002437)	REX1BD (ENSMLUG00000030218)	ENSMLUG00000029594	KXD1 (ENSMLUG00000002143)
Megabat	MODERN SPECIES	1689													TMEM161A (ENSPVAG00000005055) #30	SLC25A42 (ENSPVAG00000005053) #31	ARMC6 (ENSPVAG00000005049) #32	SUGP2 (ENSPVAG00000005047) #33
Equus	ANCESTRAL SPECIES	23	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Donkey	MODERN SPECIES		YJEFN3 (ENSEASG00005006613) #17	ENSEASG00005028100	TSSK6 (ENSEASG00005006607) #19	GATAD2A (ENSEASG00005006602) #20	MAU2 (ENSEASG00005006596) #21	SUGP1 (ENSEASG00005006593) #22	HAPLN4 (ENSEASG00005006590) #24	NCAN (ENSEASG00005006587) #25	NR2C2AP (ENSEASG00005027263) #26	RFXANK (ENSEASG00005006582) #27	BORCS8 (ENSEASG00005006580) #28	MEF2B (ENSEASG00005006578) #29	TMEM161A (ENSEASG00005006575) #30	SLC25A42 (ENSEASG00005006570) #31	ARMC6 (ENSEASG00005006568) #32	SUGP2 (ENSEASG00005006565) #33	HOMER3 (ENSEASG00005006562) #34	DDX49 (ENSEASG00005006560) #35	COPE (ENSEASG00005006557) #36	CERS1 (ENSEASG00005030456) #37	GDF1 (ENSEASG00005029430)	UPF1 (ENSEASG00005006549)	COMP (ENSEASG00005006320)	CRTC1 (ENSEASG00005006280)	KLHL26 (ENSEASG00005006276)	TMEM59L (ENSEASG00005006274)	CRLF1 (ENSEASG00005006270)	ENSEASG00005025213	UBA52 (ENSEASG00005033556)	KXD1 (ENSEASG00005031599)	FKBP8 (ENSEASG00005006254)
Horse	MODERN SPECIES	13	YJEFN3 (ENSECAG00000018123) #17	TSSK6 (ENSECAG00000051056) #19	ENSECAG00000017590	GATAD2A (ENSECAG00000012875) #20	MAU2 (ENSECAG00000001359) #21	SUGP1 (ENSECAG00000013871) #22	HAPLN4 (ENSECAG00000020045) #24	NCAN (ENSECAG00000016115) #25	NR2C2AP (ENSECAG00000015219) #26	RFXANK (ENSECAG00000009442) #27	BORCS8 (ENSECAG00000007592) #28	MEF2B (ENSECAG00000022642) #29	TMEM161A (ENSECAG00000013963) #30	SLC25A42 (ENSECAG00000011367) #31	ARMC6 (ENSECAG00000006428) #32	SUGP2 (ENSECAG00000000129) #33	HOMER3 (ENSECAG00000023105) #34	DDX49 (ENSECAG00000012194) #35	COPE (ENSECAG00000024390) #36	CERS1 (ENSECAG00000052582) #37	GDF1 (ENSECAG00000026851)	UPF1 (ENSECAG00000010639)	COMP (ENSECAG00000000336)	CRTC1 (ENSECAG00000012748)	KLHL26 (ENSECAG00000046223)	TMEM59L (ENSECAG00000000133)	REX1BD (ENSECAG00000021433)	UBA52 (ENSECAG00000020660)	CRLF1 (ENSECAG00000023854)	KXD1 (ENSECAG00000020539)	FKBP8 (ENSECAG00000012306)
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Tree shrew	MODERN SPECIES	2512																ENSTBEG00000001013 #33
Glires	ANCESTRAL SPECIES	21	ENSGT00940000160464 #19	ENSGT01090000261752	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Lagomorpha	ANCESTRAL SPECIES	501															ENSGT00390000002913 #32	ENSGT00410000025695.b #33
Pika	MODERN SPECIES	1978															ENSOPRG00000016019 #32	SUGP2 (ENSOPRG00000015993) #33
Rabbit	MODERN SPECIES	1114															ARMC6 (ENSOCUG00000023141) #32	SUGP2 (ENSOCUG00000001315) #33
Rodentia	ANCESTRAL SPECIES	17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Rodentia_B	ANCESTRAL SPECIES	37	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000153593.c.b.k	ENSGT00530000064192
Myomorpha	ANCESTRAL SPECIES	43	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000153593.c.b.k	ENSGT00530000064192
Muroidea	ANCESTRAL SPECIES	47	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Muroidea_A	ANCESTRAL SPECIES	28	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Cricetidae	ANCESTRAL SPECIES	30	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Cricetinae	ANCESTRAL SPECIES	36	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Chinese hamster chok1gshd	MODERN SPECIES	184	Ndufa13 (ENSCGRG00001022785) #18	Tssk6 (ENSCGRG00001010147) #19	Gatad2a (ENSCGRG00001018413) #20	Mau2 (ENSCGRG00001009180) #21	Sugp1 (ENSCGRG00001021250) #22	Tm6sf2 (ENSCGRG00001019424) #23	Hapln4 (ENSCGRG00001018509) #24	Ncan (ENSCGRG00001015055) #25	Nr2c2ap (ENSCGRG00001011302) #26	Rfxank (ENSCGRG00001000782) #27	Borcs8 (ENSCGRG00001020163) #28	Mef2b (ENSCGRG00001014460) #29	Tmem161a (ENSCGRG00001022808) #30	Slc25a42 (ENSCGRG00001022045) #31	Armc6 (ENSCGRG00001019296) #32	Sugp2 (ENSCGRG00001018264) #33	Homer3 (ENSCGRG00001014952) #34	Ddx49 (ENSCGRG00001009467) #35	COPE (ENSCGRG00001024248) #36	ENSCGRG00001019774 #37	ENSCGRG00001006921	Upf1 (ENSCGRG00001021067)	Comp (ENSCGRG00001009171)	Crtc1 (ENSCGRG00001002202)	Klhl26 (ENSCGRG00001020014)	Tmem59l (ENSCGRG00001018799)	Crlf1 (ENSCGRG00001017905)	Rex1bd (ENSCGRG00001023832)	Uba52 (ENSCGRG00001018293)	Fkbp8 (ENSCGRG00001012652)	Ell (ENSCGRG00001009009)
Golden Hamster	MODERN SPECIES	831	Ndufa13 (ENSMAUG00000019158) #18	Tssk6 (ENSMAUG00000008397) #19	Gatad2a (ENSMAUG00000021128) #20	Mau2 (ENSMAUG00000021335) #21	Sugp1 (ENSMAUG00000016683) #22	Tm6sf2 (ENSMAUG00000001556) #23	Hapln4 (ENSMAUG00000011983) #24	Ncan (ENSMAUG00000007276) #25	Nr2c2ap (ENSMAUG00000003921) #26	Rfxank (ENSMAUG00000002477) #27	Borcs8 (ENSMAUG00000014785) #28	Mef2b (ENSMAUG00000006774) #29	Tmem161a (ENSMAUG00000011694) #30	Slc25a42 (ENSMAUG00000018082) #31	Armc6 (ENSMAUG00000011324) #32	Sugp2 (ENSMAUG00000011371) #33	Homer3 (ENSMAUG00000014150) #34	Ddx49 (ENSMAUG00000010235) #35	Cope (ENSMAUG00000016322) #36	ENSMAUG00000011350 #37	ENSMAUG00000012872	Upf1 (ENSMAUG00000011398)	Comp (ENSMAUG00000010602)	Crtc1 (ENSMAUG00000019225)	Klhl26 (ENSMAUG00000021352)	Tmem59l (ENSMAUG00000006146)	Crlf1 (ENSMAUG00000021052)	Rex1bd (ENSMAUG00000015830)	Uba52 (ENSMAUG00000002775)	Fkbp8 (ENSMAUG00000010945)	Ell (ENSMAUG00000014805)
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Northern American deer mouse	MODERN SPECIES	8	Ndufa13 (ENSPEMG00000007743) #18	Tssk6 (ENSPEMG00000007183) #19	Gatad2a (ENSPEMG00000012515) #20	Mau2 (ENSPEMG00000016559) #21	Sugp1 (ENSPEMG00000009253) #22	Tm6sf2 (ENSPEMG00000016397) #23	Hapln4 (ENSPEMG00000029211) #24	Ncan (ENSPEMG00000012564) #25	Nr2c2ap (ENSPEMG00000001962) #26	Rfxank (ENSPEMG00000007761) #27	Borcs8 (ENSPEMG00000010340) #28	Mef2b (ENSPEMG00000018054) #29	Tmem161a (ENSPEMG00000016451) #30	Slc25a42 (ENSPEMG00000011354) #31	Armc6 (ENSPEMG00000012468) #32	Sugp2 (ENSPEMG00000009700) #33	Homer3 (ENSPEMG00000016382) #34	Ddx49 (ENSPEMG00000009238) #35	Cope (ENSPEMG00000018557) #36	ENSPEMG00000012430 #37	ENSPEMG00000029913	Upf1 (ENSPEMG00000001085)	Comp (ENSPEMG00000019103)	Crtc1 (ENSPEMG00000005110)	Klhl26 (ENSPEMG00000016863)	Tmem59l (ENSPEMG00000014170)	Crlf1 (ENSPEMG00000010464)	Rex1bd (ENSPEMG00000017857)	ENSPEMG00000018177	Fkbp8 (ENSPEMG00000008423)	Ell (ENSPEMG00000006782)
Prairie vole	MODERN SPECIES	164	Ndufa13 (ENSMOCG00000015070) #18	Tssk6 (ENSMOCG00000007466) #19	Gatad2a (ENSMOCG00000001060) #20	Mau2 (ENSMOCG00000003213) #21	Sugp1 (ENSMOCG00000014670) #22	Tm6sf2 (ENSMOCG00000018885) #23	Hapln4 (ENSMOCG00000000353) #24	Ncan (ENSMOCG00000020207) #25	Nr2c2ap (ENSMOCG00000003423) #26	Rfxank (ENSMOCG00000021751) #27	ENSMOCG00000008996 #28	Mef2b (ENSMOCG00000000308) #29	Tmem161a (ENSMOCG00000018852) #30	Slc25a42 (ENSMOCG00000012570) #31	Armc6 (ENSMOCG00000014288) #32	Sugp2 (ENSMOCG00000009704) #33	Homer3 (ENSMOCG00000013590) #34	Ddx49 (ENSMOCG00000018690) #35	Cope (ENSMOCG00000014940) #36	ENSMOCG00000004861 #37	ENSMOCG00000000275	Upf1 (ENSMOCG00000005699)	Comp (ENSMOCG00000004567)	Crtc1 (ENSMOCG00000005553)	Klhl26 (ENSMOCG00000017635)	Tmem59l (ENSMOCG00000010649)	Crlf1 (ENSMOCG00000007746)	Rex1bd (ENSMOCG00000014306)	Uba52 (ENSMOCG00000015677)	Fkbp8 (ENSMOCG00000015712)	Ell (ENSMOCG00000013489)
Murinae	ANCESTRAL SPECIES	23	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Mus	ANCESTRAL SPECIES	6	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Mouse	MODERN SPECIES	17	Ndufa13 (ENSMUSG00000036199) #18	Tssk6 (ENSMUSG00000047654) #19	Gatad2a (ENSMUSG00000036180) #20	Mau2 (ENSMUSG00000031858) #21	Sugp1 (ENSMUSG00000011306) #22	Tm6sf2 (ENSMUSG00000036151) #23	Hapln4 (ENSMUSG00000007594) #24	Ncan (ENSMUSG00000002341) #25	Rfxank (ENSMUSG00000036120) #27	Nr2c2ap (ENSMUSG00000071078) #26	Borcs8 (ENSMUSG00000002345) #28	Mef2b (ENSMUSG00000079033) #29	Tmem161a (ENSMUSG00000002342) #30	Slc25a42 (ENSMUSG00000002346) #31	Armc6 (ENSMUSG00000002343) #32	Sugp2 (ENSMUSG00000036054) #33	Homer3 (ENSMUSG00000003573) #34	Ddx49 (ENSMUSG00000057788) #35	Cope (ENSMUSG00000055681) #36	Cers1 (ENSMUSG00000087408)	Gdf1 (ENSMUSG00000109523)	Upf1 (ENSMUSG00000058301)	Comp (ENSMUSG00000031849)	Crtc1 (ENSMUSG00000003575)	Klhl26 (ENSMUSG00000055707)	Tmem59l (ENSMUSG00000035964)	Crlf1 (ENSMUSG00000007888)	Rex1bd (ENSMUSG00000058833)	Uba52 (ENSMUSG00000090137)	Kxd1 (ENSMUSG00000055553)	Fkbp8 (ENSMUSG00000019428)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
spretus	MODERN SPECIES	17	Ndufa13 (MGP_SPRETEiJ_G0032240) #18	Tssk6 (MGP_SPRETEiJ_G0032241) #19	Gatad2a (MGP_SPRETEiJ_G0032242) #20	Mau2 (MGP_SPRETEiJ_G0032243) #21	Sugp1 (MGP_SPRETEiJ_G0032244) #22	Tm6sf2 (MGP_SPRETEiJ_G0032245) #23	Hapln4 (MGP_SPRETEiJ_G0032246) #24	Ncan (MGP_SPRETEiJ_G0032247) #25	Rfxank (MGP_SPRETEiJ_G0032248) #27	Nr2c2ap (MGP_SPRETEiJ_G0032249) #26	MGP_SPRETEiJ_G0032250 #29	MGP_SPRETEiJ_G0032251 #29	Tmem161a (MGP_SPRETEiJ_G0032252) #30	Slc25a42 (MGP_SPRETEiJ_G0032253) #31	Armc6 (MGP_SPRETEiJ_G0032254) #32	Sugp2 (MGP_SPRETEiJ_G0032255) #33	Homer3 (MGP_SPRETEiJ_G0032256) #34	Ddx49 (MGP_SPRETEiJ_G0032257) #35	Cope (MGP_SPRETEiJ_G0032258) #36	MGP_SPRETEiJ_G0032259	Upf1 (MGP_SPRETEiJ_G0032260)	Comp (MGP_SPRETEiJ_G0032261)	Crtc1 (MGP_SPRETEiJ_G0032262)	Klhl26 (MGP_SPRETEiJ_G0032263)	Tmem59l (MGP_SPRETEiJ_G0032264)	Crlf1 (MGP_SPRETEiJ_G0032265)	Rex1bd (MGP_SPRETEiJ_G0032266)	MGP_SPRETEiJ_G0032267	MGP_SPRETEiJ_G0032268	Fkbp8 (MGP_SPRETEiJ_G0032269)	Ell (MGP_SPRETEiJ_G0032270)
Steppe mouse	MODERN SPECIES	2734	Ndufa13 (ENSMSIG00000032033) #18	Tssk6 (ENSMSIG00000032034) #19	Gatad2a (ENSMSIG00000032035) #20	Mau2 (ENSMSIG00000032036) #21	Sugp1 (ENSMSIG00000032037) #22	Tm6sf2 (ENSMSIG00000032038) #23	Hapln4 (ENSMSIG00000032039) #24	Ncan (ENSMSIG00000032040) #25	Nr2c2ap (ENSMSIG00000032043) #26	Rfxank (ENSMSIG00000032044) #27	Borcs8 (ENSMSIG00000032045) #28	ENSMSIG00000032046 #29	Tmem161a (ENSMSIG00000032047) #30	Slc25a42 (ENSMSIG00000032048) #31	Armc6 (ENSMSIG00000032049) #32	Sugp2 (ENSMSIG00000032050) #33	Homer3 (ENSMSIG00000032051) #34	Ddx49 (ENSMSIG00000032052) #35	Cope (ENSMSIG00000032053) #36	ENSMSIG00000032054 #37	ENSMSIG00000032055	Upf1 (ENSMSIG00000032056)	Comp (ENSMSIG00000032057)	Crtc1 (ENSMSIG00000032058)	Klhl26 (ENSMSIG00000032059)	Tmem59l (ENSMSIG00000032060)	Crlf1 (ENSMSIG00000032061)	ENSMSIG00000032062	ENSMSIG00000032063	ENSMSIG00000032064	Ell (ENSMSIG00000032065)
Ryukyu mouse	MODERN SPECIES	17	Ndufa13 (MGP_CAROLIEiJ_G0031122) #18	Tssk6 (MGP_CAROLIEiJ_G0031123) #19	Gatad2a (MGP_CAROLIEiJ_G0031124) #20	Mau2 (MGP_CAROLIEiJ_G0031125) #21	Sugp1 (MGP_CAROLIEiJ_G0031126) #22	Tm6sf2 (MGP_CAROLIEiJ_G0031127) #23	Hapln4 (MGP_CAROLIEiJ_G0031128) #24	Ncan (MGP_CAROLIEiJ_G0031129) #25	Rfxank (MGP_CAROLIEiJ_G0031130) #27	Nr2c2ap (MGP_CAROLIEiJ_G0031131) #26	MGP_CAROLIEiJ_G0031132 #29	MGP_CAROLIEiJ_G0031133 #29	Tmem161a (MGP_CAROLIEiJ_G0031134) #30	Slc25a42 (MGP_CAROLIEiJ_G0031135) #31	Armc6 (MGP_CAROLIEiJ_G0031136) #32	Sugp2 (MGP_CAROLIEiJ_G0031137) #33	Homer3 (MGP_CAROLIEiJ_G0031138) #34	Ddx49 (MGP_CAROLIEiJ_G0031139) #35	Cope (MGP_CAROLIEiJ_G0031140) #36	MGP_CAROLIEiJ_G0031141	Upf1 (MGP_CAROLIEiJ_G0031142)	Comp (MGP_CAROLIEiJ_G0031143)	Crtc1 (MGP_CAROLIEiJ_G0031144)	Klhl26 (MGP_CAROLIEiJ_G0031145)	Tmem59l (MGP_CAROLIEiJ_G0031146)	Crlf1 (MGP_CAROLIEiJ_G0031147)	Rex1bd (MGP_CAROLIEiJ_G0031148)	MGP_CAROLIEiJ_G0031149	MGP_CAROLIEiJ_G0031150	Fkbp8 (MGP_CAROLIEiJ_G0031151)	Ell (MGP_CAROLIEiJ_G0031152)
Shrew mouse	MODERN SPECIES	10	Ndufa13 (MGP_PahariEiJ_G0021587) #18	Tssk6 (MGP_PahariEiJ_G0021588) #19	Gatad2a (MGP_PahariEiJ_G0021589) #20	Mau2 (MGP_PahariEiJ_G0021590) #21	Sugp1 (MGP_PahariEiJ_G0021591) #22	Tm6sf2 (MGP_PahariEiJ_G0021592) #23	Hapln4 (MGP_PahariEiJ_G0021593) #24	Ncan (MGP_PahariEiJ_G0021594) #25	Rfxank (MGP_PahariEiJ_G0021595) #27	Nr2c2ap (MGP_PahariEiJ_G0021596) #26	MGP_PahariEiJ_G0021597 #29	MGP_PahariEiJ_G0021598 #29	Tmem161a (MGP_PahariEiJ_G0021599) #30	Slc25a42 (MGP_PahariEiJ_G0021600) #31	Armc6 (MGP_PahariEiJ_G0021601) #32	Sugp2 (MGP_PahariEiJ_G0021602) #33	Homer3 (MGP_PahariEiJ_G0021603) #34	Ddx49 (MGP_PahariEiJ_G0021604) #35	Cope (MGP_PahariEiJ_G0021605) #36	MGP_PahariEiJ_G0021606	Upf1 (MGP_PahariEiJ_G0021607)	Comp (MGP_PahariEiJ_G0021608)	Crtc1 (MGP_PahariEiJ_G0021609)	Klhl26 (MGP_PahariEiJ_G0021610)	Tmem59l (MGP_PahariEiJ_G0021611)	Crlf1 (MGP_PahariEiJ_G0021612)	Rex1bd (MGP_PahariEiJ_G0021613)	MGP_PahariEiJ_G0021614	MGP_PahariEiJ_G0021615	Fkbp8 (MGP_PahariEiJ_G0021616)	Ell (MGP_PahariEiJ_G0021617)
Rat	MODERN SPECIES	7	Ndufa13 (ENSRNOG00000020602) #18	Tssk6 (ENSRNOG00000020599) #19	Gatad2a (ENSRNOG00000022173) #20	Mau2 (ENSRNOG00000020526) #21	Sugp1 (ENSRNOG00000052111) #22	Tm6sf2 (ENSRNOG00000042237) #23	Hapln4 (ENSRNOG00000049949) #24	Ncan (ENSRNOG00000048036) #25	Nr2c2ap (ENSRNOG00000022247) #26	Rfxank (ENSRNOG00000033318) #27	Borcs8 (ENSRNOG00000020427) #28	Mef2b (ENSRNOG00000020400) #29	Tmem161a (ENSRNOG00000020390) #30	Slc25a42 (ENSRNOG00000020345) #31	Armc6 (ENSRNOG00000020280) #32	Sugp2 (ENSRNOG00000020269) #33	Homer3 (ENSRNOG00000020229) #34	Ddx49 (ENSRNOG00000022368) #35	Cope (ENSRNOG00000020178) #36	Cers1 (ENSRNOG00000067124) #37	Gdf1 (ENSRNOG00000070518)	Upf1 (ENSRNOG00000020134)	Comp (ENSRNOG00000048472)	Crtc1 (ENSRNOG00000022421)	Klhl26 (ENSRNOG00000020088)	Tmem59l (ENSRNOG00000022432)	Crlf1 (ENSRNOG00000020030)	Rex1bd (ENSRNOG00000019990)	Uba52 (ENSRNOG00000019971)	Fkbp8 (ENSRNOG00000058359)	Ell (ENSRNOG00000019824)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1870	Ndufa13 (ENSNGAG00000023080) #18	Tssk6 (ENSNGAG00000001299) #19	Gatad2a (ENSNGAG00000004469) #20	Mau2 (ENSNGAG00000015571) #21	Sugp1 (ENSNGAG00000018965) #22	Tm6sf2 (ENSNGAG00000020192) #23	Hapln4 (ENSNGAG00000014554) #24	Ncan (ENSNGAG00000022597) #25	Nr2c2ap (ENSNGAG00000010770) #26	Rfxank (ENSNGAG00000012986) #27	Borcs8 (ENSNGAG00000023653) #28	Mef2b (ENSNGAG00000010342) #29	Tmem161a (ENSNGAG00000023788) #30	Slc25a42 (ENSNGAG00000023980) #31	Armc6 (ENSNGAG00000021205) #32	Sugp2 (ENSNGAG00000005936) #33	Homer3 (ENSNGAG00000015803) #34	Ddx49 (ENSNGAG00000019673) #35	Cope (ENSNGAG00000022394) #36	ENSNGAG00000022292 #37	ENSNGAG00000022538	Upf1 (ENSNGAG00000024107)	Comp (ENSNGAG00000024332)	Crtc1 (ENSNGAG00000021475)	Klhl26 (ENSNGAG00000010743)	Tmem59l (ENSNGAG00000020797)	Crlf1 (ENSNGAG00000022169)	Rex1bd (ENSNGAG00000013627)	Uba52 (ENSNGAG00000010884)	Fkbp8 (ENSNGAG00000001505)	Ell (ENSNGAG00000004302)
Lesser Egyptian jerboa	MODERN SPECIES	127	Gmip (ENSJJAG00000013017) #13	Lpar2 (ENSJJAG00000022302) #14	Pbx4 (ENSJJAG00000010902) #15	Ndufa13 (ENSJJAG00000021903) #18	Tssk6 (ENSJJAG00000006030) #19	Gatad2a (ENSJJAG00000014763) #20	Mau2 (ENSJJAG00000021815) #21	Sugp1 (ENSJJAG00000013477) #22	Tm6sf2 (ENSJJAG00000023997) #23	Hapln4 (ENSJJAG00000016332) #24	Ncan (ENSJJAG00000018295) #25	Nr2c2ap (ENSJJAG00000023882) #26	Mef2b (ENSJJAG00000009955) #29	Slc25a42 (ENSJJAG00000018672) #31	Armc6 (ENSJJAG00000014237) #32	Sugp2 (ENSJJAG00000005264) #33	Homer3 (ENSJJAG00000014551) #34	Cope (ENSJJAG00000017037) #36	ENSJJAG00000016264 #37	ENSJJAG00000000262	Upf1 (ENSJJAG00000023151)	Comp (ENSJJAG00000011685)	Crtc1 (ENSJJAG00000014073)	Klhl26 (ENSJJAG00000015486)	Tmem59l (ENSJJAG00000015054)	Crlf1 (ENSJJAG00000023822)	Rex1bd (ENSJJAG00000013226)	ENSJJAG00000005654	ENSJJAG00000016159	Fkbp8 (ENSJJAG00000012734)	Ell (ENSJJAG00000015761)
Kangaroo rat	MODERN SPECIES	427	Gmip (ENSDORG00000005179) #13	Lpar2 (ENSDORG00000023437) #14	Tssk6 (ENSDORG00000008538) #19	Gatad2a (ENSDORG00000008536) #20	Mau2 (ENSDORG00000004918) #21	ENSDORG00000024315 #22	Tm6sf2 (ENSDORG00000004913) #23	Hapln4 (ENSDORG00000004912) #24	Nr2c2ap (ENSDORG00000001440) #26	Rfxank (ENSDORG00000001449) #27	Borcs8 (ENSDORG00000027906) #28	ENSDORG00000011003 #29	ENSDORG00000010999 #30	Slc25a42 (ENSDORG00000010998) #31	ENSDORG00000004418 #32	Sugp2 (ENSDORG00000011519) #33	ENSDORG00000004302 #34	Ddx49 (ENSDORG00000004301) #35	Cope (ENSDORG00000004298) #36	ENSDORG00000023557 #37	Upf1 (ENSDORG00000009984)	Comp (ENSDORG00000027719)	Crtc1 (ENSDORG00000026183)	Klhl26 (ENSDORG00000000436)	Tmem59l (ENSDORG00000024894)	Gm11808 (ENSDORG00000026093)	ENSDORG00000025514	Fkbp8 (ENSDORG00000010135)	Isyna1 (ENSDORG00000025359)	ENSDORG00000014394	Lsm4 (ENSDORG00000024225)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Sciuridae	ANCESTRAL SPECIES	20	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.k
Marmotini	ANCESTRAL SPECIES	12	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705.k	ENSGT00940000155914
Alpin marmot	MODERN SPECIES	24	NDUFA13 (ENSMMMG00000003609) #18	TSSK6 (ENSMMMG00000003603) #19	GATAD2A (ENSMMMG00000003539) #20	MAU2 (ENSMMMG00000003432) #21	SUGP1 (ENSMMMG00000003416) #22	TM6SF2 (ENSMMMG00000003397) #23	HAPLN4 (ENSMMMG00000003386) #24	NCAN (ENSMMMG00000003066) #25	NR2C2AP (ENSMMMG00000003044) #26	RFXANK (ENSMMMG00000003029) #27	BORCS8 (ENSMMMG00000003015) #28	MEF2B (ENSMMMG00000002982) #29	TMEM161A (ENSMMMG00000002937) #30	SLC25A42 (ENSMMMG00000002914) #31	ARMC6 (ENSMMMG00000002877) #32	SUGP2 (ENSMMMG00000002743) #33	HOMER3 (ENSMMMG00000002691) #34	DDX49 (ENSMMMG00000002658) #35	COPE (ENSMMMG00000002634) #36	CERS1 (ENSMMMG00000002619) #37	UPF1 (ENSMMMG00000001874)	COMP (ENSMMMG00000001807)	CRTC1 (ENSMMMG00000001771)	ENSMMMG00000001749	CRLF1 (ENSMMMG00000001730)	REX1BD (ENSMMMG00000001721)	ENSMMMG00000001669	FKBP8 (ENSMMMG00000001633)	ELL (ENSMMMG00000001572)	ISYNA1 (ENSMMMG00000001488)	SSBP4 (ENSMMMG00000001427)
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705.k	ENSGT00940000155914
Arctic ground squirrel	MODERN SPECIES	73	YJEFN3 (ENSUPAG00010018017) #17	TSSK6 (ENSUPAG00010018027) #19	GATAD2A (ENSUPAG00010018036) #20	MAU2 (ENSUPAG00010018075) #21	SUGP1 (ENSUPAG00010018104) #22	TM6SF2 (ENSUPAG00010018116) #23	HAPLN4 (ENSUPAG00010018121) #24	NCAN (ENSUPAG00010018127) #25	NR2C2AP (ENSUPAG00010018146) #26	RFXANK (ENSUPAG00010018152) #27	BORCS8 (ENSUPAG00010018165) #28	MEF2B (ENSUPAG00010018172) #29	TMEM161A (ENSUPAG00010018179) #30	SLC25A42 (ENSUPAG00010018191) #31	ARMC6 (ENSUPAG00010018208) #32	SUGP2 (ENSUPAG00010018216) #33	HOMER3 (ENSUPAG00010018230) #34	DDX49 (ENSUPAG00010018246) #35	COPE (ENSUPAG00010018276) #36	CERS1 (ENSUPAG00010018294) #37	GDF1 (ENSUPAG00010018300)	UPF1 (ENSUPAG00010018302)	COMP (ENSUPAG00010018331)	CRTC1 (ENSUPAG00010018349)	KLHL26 (ENSUPAG00010018384)	TMEM59L (ENSUPAG00010018396)	CRLF1 (ENSUPAG00010018403)	REX1BD (ENSUPAG00010018419)	UBA52 (ENSUPAG00010018444)	FKBP8 (ENSUPAG00010018474)	ELL (ENSUPAG00010018509)
Squirrel	MODERN SPECIES	196	NDUFA13 (ENSSTOG00000022888) #18	TSSK6 (ENSSTOG00000021351) #19	GATAD2A (ENSSTOG00000022640) #20	MAU2 (ENSSTOG00000001026) #21	SUGP1 (ENSSTOG00000001020) #22	TM6SF2 (ENSSTOG00000025054) #23	HAPLN4 (ENSSTOG00000007240) #24	NCAN (ENSSTOG00000001012) #25	NR2C2AP (ENSSTOG00000001006) #26	RFXANK (ENSSTOG00000024080) #27	BORCS8 (ENSSTOG00000025422) #28	MEF2B (ENSSTOG00000005895) #29	TMEM161A (ENSSTOG00000005867) #30	SLC25A42 (ENSSTOG00000022047) #31	ARMC6 (ENSSTOG00000012997) #32	SUGP2 (ENSSTOG00000026887) #33	HOMER3 (ENSSTOG00000029095) #34	DDX49 (ENSSTOG00000006749) #35	COPE (ENSSTOG00000006736) #36	CERS1 (ENSSTOG00000029010) #37	GDF1 (ENSSTOG00000020887)	UPF1 (ENSSTOG00000009196)	COMP (ENSSTOG00000026172)	CRTC1 (ENSSTOG00000022992)	KLHL26 (ENSSTOG00000026260)	TMEM59L (ENSSTOG00000013508)	CRLF1 (ENSSTOG00000004708)	REX1BD (ENSSTOG00000004692)	UBA52 (ENSSTOG00000004678)	FKBP8 (ENSSTOG00000014068)	ELL (ENSSTOG00000004646)
Eurasian red squirrel	MODERN SPECIES	7	TSSK6 (ENSSVLG00005018119) #19	GATAD2A (ENSSVLG00005018054) #20	MAU2 (ENSSVLG00005017993) #21	SUGP1 (ENSSVLG00005017843) #22	TM6SF2 (ENSSVLG00005017792) #23	HAPLN4 (ENSSVLG00005017756) #24	ENSSVLG00005017692	NCAN (ENSSVLG00005017503) #25	NR2C2AP (ENSSVLG00005017403) #26	RFXANK (ENSSVLG00005017362) #27	BORCS8 (ENSSVLG00005017305) #28	MEF2B (ENSSVLG00005017215) #29	TMEM161A (ENSSVLG00005017057) #30	SLC25A42 (ENSSVLG00005017005) #31	ARMC6 (ENSSVLG00005016951) #32	SUGP2 (ENSSVLG00005016823) #33	HOMER3 (ENSSVLG00005016701) #34	DDX49 (ENSSVLG00005016654) #35	COPE (ENSSVLG00005016567) #36	CERS1 (ENSSVLG00005016494) #37	UPF1 (ENSSVLG00005016436)	COMP (ENSSVLG00005016356)	CRTC1 (ENSSVLG00005016088)	KLHL26 (ENSSVLG00005015974)	TMEM59L (ENSSVLG00005015929)	CRLF1 (ENSSVLG00005015862)	REX1BD (ENSSVLG00005015816)	UBA52 (ENSSVLG00005025643)	KXD1 (ENSSVLG00005025639)	FKBP8 (ENSSVLG00005025627)	ELL (ENSSVLG00005025617)
Hystricomorpha	ANCESTRAL SPECIES	47	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000153593.d	ENSGT00530000064192
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000049921	ENSHGLG00000039559	ENSHGLG00000046812	ENSHGLG00000044603	ENSHGLG00000042271	ENSHGLG00000003184	ENSHGLG00000013806 #13	LPAR2 (ENSHGLG00000035704) #14	CILP2 (ENSHGLG00000018931) #16	YJEFN3 (ENSHGLG00000019524) #17	NDUFA13 (ENSHGLG00000018628) #18	TSSK6 (ENSHGLG00000020778) #19	GATAD2A (ENSHGLG00000003176) #20	ENSHGLG00000049094 #21	ENSHGLG00000048186 #22	ENSHGLG00000039617 #33	ENSHGLG00000042474 #22	TM6SF2 (ENSHGLG00000004113) #23	HAPLN4 (ENSHGLG00000003896) #24	NCAN (ENSHGLG00000034381) #25	NR2C2AP (ENSHGLG00000033726) #26	RFXANK (ENSHGLG00000003396) #27	MEF2BNB (ENSHGLG00000047513) #28	ENSHGLG00000003123 #29	TMEM161A (ENSHGLG00000009517) #30	SLC25A42 (ENSHGLG00000008826) #31	ARMC6 (ENSHGLG00000008147) #32	HOMER3 (ENSHGLG00000006851) #34	ENSHGLG00000006789 #35	COPE (ENSHGLG00000006648) #36	CERS1 (ENSHGLG00000013716) #37
Hystricomorpha_a	ANCESTRAL SPECIES	55	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Hystricomorpha_b	ANCESTRAL SPECIES	66	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705	ENSGT00940000155914
Long-tailed chinchilla	MODERN SPECIES	231	NDUFA13 (ENSCLAG00000016915) #18	TSSK6 (ENSCLAG00000018107) #19	GATAD2A (ENSCLAG00000010160) #20	MAU2 (ENSCLAG00000006535) #21	SUGP1 (ENSCLAG00000003512) #22	TM6SF2 (ENSCLAG00000003633) #23	HAPLN4 (ENSCLAG00000003955) #24	NCAN (ENSCLAG00000004140) #25	NR2C2AP (ENSCLAG00000004378) #26	RFXANK (ENSCLAG00000004632) #27	BORCS8 (ENSCLAG00000004959) #28	MEF2B (ENSCLAG00000007377) #29	TMEM161A (ENSCLAG00000007578) #30	SLC25A42 (ENSCLAG00000008004) #31	ARMC6 (ENSCLAG00000008215) #32	SUGP2 (ENSCLAG00000011375) #33	HOMER3 (ENSCLAG00000011599) #34	DDX49 (ENSCLAG00000012844) #35	COPE (ENSCLAG00000003621) #36	CERS1 (ENSCLAG00000003897) #37	UPF1 (ENSCLAG00000004037)	COMP (ENSCLAG00000005109)	CRTC1 (ENSCLAG00000005682)	KLHL26 (ENSCLAG00000006029)	TMEM59L (ENSCLAG00000006357)	CRLF1 (ENSCLAG00000006697)	ENSCLAG00000007191	UBA52 (ENSCLAG00000005686)	FKBP8 (ENSCLAG00000005953)	ELL (ENSCLAG00000007609)	ISYNA1 (ENSCLAG00000008992)
Degu	MODERN SPECIES	323	NDUFA13 (ENSODEG00000013435) #18	TSSK6 (ENSODEG00000020032) #19	GATAD2A (ENSODEG00000013506) #20	MAU2 (ENSODEG00000012887) #21	SUGP1 (ENSODEG00000011538) #22	TM6SF2 (ENSODEG00000010936) #23	HAPLN4 (ENSODEG00000011689) #24	NCAN (ENSODEG00000011699) #25	NR2C2AP (ENSODEG00000011486) #26	RFXANK (ENSODEG00000013006) #27	BORCS8 (ENSODEG00000013003) #28	MEF2B (ENSODEG00000012357) #29	TMEM161A (ENSODEG00000012343) #30	SLC25A42 (ENSODEG00000012168) #31	ARMC6 (ENSODEG00000012613) #32	SUGP2 (ENSODEG00000012058) #33	HOMER3 (ENSODEG00000014870) #34	DDX49 (ENSODEG00000011203) #35	COPE (ENSODEG00000011547) #36	CERS1 (ENSODEG00000011214) #37	GDF1 (ENSODEG00000011857)	UPF1 (ENSODEG00000012426)	COMP (ENSODEG00000015412)	CRTC1 (ENSODEG00000011739)	KLHL26 (ENSODEG00000012544)	TMEM59L (ENSODEG00000012052)	CRLF1 (ENSODEG00000012883)	REX1BD (ENSODEG00000013625)	ENSODEG00000012337	ENSODEG00000013486	ELL (ENSODEG00000012821)
Guinea pig	MODERN SPECIES	72	YJEFN3 (ENSCPOG00000023842) #17	NDUFA13 (ENSCPOG00000019995) #18	TSSK6 (ENSCPOG00000024320) #19	GATAD2A (ENSCPOG00000015396) #20	MAU2 (ENSCPOG00000003755) #21	SUGP1 (ENSCPOG00000007797) #22	TM6SF2 (ENSCPOG00000022916) #23	HAPLN4 (ENSCPOG00000023683) #24	NR2C2AP (ENSCPOG00000032927) #26	RFXANK (ENSCPOG00000003121) #27	BORCS8 (ENSCPOG00000036178) #28	MEF2B (ENSCPOG00000032781) #29	TMEM161A (ENSCPOG00000013640) #30	SLC25A42 (ENSCPOG00000013086) #31	ARMC6 (ENSCPOG00000006374) #32	SUGP2 (ENSCPOG00000006372) #33	HOMER3 (ENSCPOG00000004565) #34	DDX49 (ENSCPOG00000013626) #35	COPE (ENSCPOG00000013624) #36	CERS1 (ENSCPOG00000033783) #37	GDF1 (ENSCPOG00000031791)	UPF1 (ENSCPOG00000025463)	COMP (ENSCPOG00000025029)	CRTC1 (ENSCPOG00000034343)	KLHL26 (ENSCPOG00000020718)	TMEM59L (ENSCPOG00000021490)	CRLF1 (ENSCPOG00000021160)	UBA52 (ENSCPOG00000025880)	FKBP8 (ENSCPOG00000026709)	ELL (ENSCPOG00000022431)	ISYNA1 (ENSCPOG00000027332)
Primates	ANCESTRAL SPECIES	18	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Strepsirrhini	ANCESTRAL SPECIES	33	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Bushbaby	MODERN SPECIES	220	NDUFA13 (ENSOGAG00000007445) #18	TSSK6 (ENSOGAG00000027271) #19	GATAD2A (ENSOGAG00000007442) #20	MAU2 (ENSOGAG00000009979) #21	ENSOGAG00000009975 #22	TM6SF2 (ENSOGAG00000028833) #23	HAPLN4 (ENSOGAG00000009972) #24	NCAN (ENSOGAG00000010954) #25	NR2C2AP (ENSOGAG00000033463) #26	RFXANK (ENSOGAG00000010950) #27	BORCS8 (ENSOGAG00000028427) #28	MEF2B (ENSOGAG00000001694) #29	TMEM161A (ENSOGAG00000015720) #30	SLC25A42 (ENSOGAG00000007251) #31	ARMC6 (ENSOGAG00000007536) #32	SUGP2 (ENSOGAG00000024068) #33	HOMER3 (ENSOGAG00000008261) #34	DDX49 (ENSOGAG00000008259) #35	COPE (ENSOGAG00000031639) #36	CERS1 (ENSOGAG00000033679) #37	GDF1 (ENSOGAG00000012872)	UPF1 (ENSOGAG00000012866)	COMP (ENSOGAG00000004930)	CRTC1 (ENSOGAG00000004927)	KLHL26 (ENSOGAG00000004926)	TMEM59L (ENSOGAG00000004923)	CRLF1 (ENSOGAG00000004920)	REX1BD (ENSOGAG00000033304)	UBA52 (ENSOGAG00000028000)	KXD1 (ENSOGAG00000007523)	FKBP8 (ENSOGAG00000007440)
Lemuriformes	ANCESTRAL SPECIES	45	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Lemuriformes_a	ANCESTRAL SPECIES	65	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.l #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705
Greater bamboo lemur	MODERN SPECIES	392	NDUFA13 (ENSPSMG00000002354) #18	TSSK6 (ENSPSMG00000002343) #19	GATAD2A (ENSPSMG00000002335) #20	MAU2 (ENSPSMG00000002309) #21	SUGP1 (ENSPSMG00000002255) #22	TM6SF2 (ENSPSMG00000002208) #23	HAPLN4 (ENSPSMG00000002199) #24	NCAN (ENSPSMG00000002186) #25	NR2C2AP (ENSPSMG00000002131) #26	RFXANK (ENSPSMG00000002047) #27	BORCS8 (ENSPSMG00000002009) #28	MEF2B (ENSPSMG00000001996) #29	TMEM161A (ENSPSMG00000001938) #30	SLC25A42 (ENSPSMG00000001893) #31	ARMC6 (ENSPSMG00000001861) #32	SUGP2 (ENSPSMG00000001742) #33	HOMER3 (ENSPSMG00000001606) #34	DDX49 (ENSPSMG00000001520) #35	COPE (ENSPSMG00000001405) #36	CERS1 (ENSPSMG00000001173) #37	GDF1 (ENSPSMG00000001150)	UPF1 (ENSPSMG00000001054)	COMP (ENSPSMG00000000819)	CRTC1 (ENSPSMG00000000672)	KLHL26 (ENSPSMG00000000655)	TMEM59L (ENSPSMG00000000639)	CRLF1 (ENSPSMG00000000604)	REX1BD (ENSPSMG00000000580)	UBA52 (ENSPSMG00000000564)	KXD1 (ENSPSMG00000000536)	FKBP8 (ENSPSMG00000000488)
Coquerels sifaka	MODERN SPECIES	589	NDUFA13 (ENSPCOG00000015544) #18	TSSK6 (ENSPCOG00000012813) #19	GATAD2A (ENSPCOG00000019794) #20	MAU2 (ENSPCOG00000020236) #21	SUGP1 (ENSPCOG00000017524) #22	TM6SF2 (ENSPCOG00000024818) #23	HAPLN4 (ENSPCOG00000023645) #24	NCAN (ENSPCOG00000015066) #25	NR2C2AP (ENSPCOG00000023079) #26	RFXANK (ENSPCOG00000019783) #27	BORCS8 (ENSPCOG00000016887) #28	MEF2B (ENSPCOG00000024251) #29	TMEM161A (ENSPCOG00000012683) #30	SLC25A42 (ENSPCOG00000026001) #31	ARMC6 (ENSPCOG00000017481) #32	SUGP2 (ENSPCOG00000016042) #33	HOMER3 (ENSPCOG00000014798) #34	DDX49 (ENSPCOG00000024973) #35	COPE (ENSPCOG00000015758) #36	GDF1 (ENSPCOG00000015607)	UPF1 (ENSPCOG00000023813)	COMP (ENSPCOG00000023117)	CRTC1 (ENSPCOG00000027092)	KLHL26 (ENSPCOG00000028544)	TMEM59L (ENSPCOG00000026454)	CRLF1 (ENSPCOG00000013640)	REX1BD (ENSPCOG00000014515)	ENSPCOG00000012784	FKBP8 (ENSPCOG00000024761)	ELL (ENSPCOG00000024473)	ISYNA1 (ENSPCOG00000023528)
Mouse lemur	MODERN SPECIES	16	ENSMICG00000045642	HOMER3 (ENSMICG00000038004) #34	ENSMICG00000003656 #34	DDX49 (ENSMICG00000003640) #35	COPE (ENSMICG00000003630) #36	TM6SF2 (ENSMICG00000037360) #23	HAPLN4 (ENSMICG00000032572) #24	NCAN (ENSMICG00000036837) #25	NR2C2AP (ENSMICG00000003978) #26	RFXANK (ENSMICG00000003972) #27	BORCS8 (ENSMICG00000027617) #28	MEF2B (ENSMICG00000000439) #29	TMEM161A (ENSMICG00000034501) #30	SLC25A42 (ENSMICG00000042876) #31	ARMC6 (ENSMICG00000003677) #32	SUGP2 (ENSMICG00000003666) #33	ZNF558 (ENSMICG00000027068)	PALM (ENSMICG00000044367)	MISP (ENSMICG00000034580)	PTBP1 (ENSMICG00000007131)	PLPPR3 (ENSMICG00000031756)	ENSMICG00000028531	FABP2 (ENSMICG00000032838)	PDE5A (ENSMICG00000002964)	MAD2L1 (ENSMICG00000043113)	PRDM5 (ENSMICG00000001459)	NDNF (ENSMICG00000030202)	TNIP3 (ENSMICG00000038352)	PLPP2 (ENSMICG00000003741)	MIER2 (ENSMICG00000008694)	THEG (ENSMICG00000008700)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Tarsier	MODERN SPECIES	7040															ARMC6 (ENSTSYG00000036477) #32	SUGP2 (ENSTSYG00000027045) #33	PPP1R12B (ENSTSYG00000001713)	UBE2T (ENSTSYG00000001704)	LGR6 (ENSTSYG00000029316)
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Platyrrhini	ANCESTRAL SPECIES	25	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Cebidae	ANCESTRAL SPECIES	8	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Cebidae_a	ANCESTRAL SPECIES	48	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081.g.a #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Capuchin	MODERN SPECIES	280	ENSCCAG00000027170 #18	TSSK6 (ENSCCAG00000019676) #19	GATAD2A (ENSCCAG00000036212) #20	MAU2 (ENSCCAG00000031923) #21	SUGP1 (ENSCCAG00000024177) #22	TM6SF2 (ENSCCAG00000030646) #23	HAPLN4 (ENSCCAG00000030280) #24	NCAN (ENSCCAG00000029973) #25	NR2C2AP (ENSCCAG00000034992) #26	RFXANK (ENSCCAG00000034756) #27	BORCS8 (ENSCCAG00000026464) #28	MEF2B (ENSCCAG00000025516) #29	ENSCCAG00000034387 #30	SLC25A42 (ENSCCAG00000028461) #31	ARMC6 (ENSCCAG00000027993) #32	SUGP2 (ENSCCAG00000023178) #33	HOMER3 (ENSCCAG00000024819) #34	DDX49 (ENSCCAG00000036092) #35	COPE (ENSCCAG00000036516) #36	CERS1 (ENSCCAG00000033033) #37	GDF1 (ENSCCAG00000027600)	UPF1 (ENSCCAG00000032175)	COMP (ENSCCAG00000032561)	CRTC1 (ENSCCAG00000023281)	KLHL26 (ENSCCAG00000019068)	TMEM59L (ENSCCAG00000030314)	CRLF1 (ENSCCAG00000027668)	REX1BD (ENSCCAG00000025734)	UBA52 (ENSCCAG00000020993)	KXD1 (ENSCCAG00000037734)	FKBP8 (ENSCCAG00000026822)
Bolivian squirrel monkey	MODERN SPECIES	199	NDUFA13 (ENSSBOG00000019126) #18	TSSK6 (ENSSBOG00000018199) #19	GATAD2A (ENSSBOG00000029481) #20	MAU2 (ENSSBOG00000034577) #21	SUGP1 (ENSSBOG00000020160) #22	TM6SF2 (ENSSBOG00000031897) #23	HAPLN4 (ENSSBOG00000028603) #24	NCAN (ENSSBOG00000033005) #25	NR2C2AP (ENSSBOG00000031337) #26	RFXANK (ENSSBOG00000022019) #27	BORCS8 (ENSSBOG00000022945) #28	MEF2B (ENSSBOG00000024550) #29	TMEM161A (ENSSBOG00000031066) #30	SLC25A42 (ENSSBOG00000024288) #31	ENSSBOG00000024227 #32	SUGP2 (ENSSBOG00000020629) #33	HOMER3 (ENSSBOG00000030722) #34	DDX49 (ENSSBOG00000035812) #35	COPE (ENSSBOG00000014113) #36	CERS1 (ENSSBOG00000000038) #37	GDF1 (ENSSBOG00000035053)	UPF1 (ENSSBOG00000023632)	COMP (ENSSBOG00000003799)	CRTC1 (ENSSBOG00000032842)	KLHL26 (ENSSBOG00000031453)	TMEM59L (ENSSBOG00000019651)	CRLF1 (ENSSBOG00000029563)	REX1BD (ENSSBOG00000030684)	UBA52 (ENSSBOG00000024000)	FKBP8 (ENSSBOG00000026752)	ELL (ENSSBOG00000025773)
Marmoset	MODERN SPECIES	14	ENSCJAG00000043112 #18	GATAD2A (ENSCJAG00000040704) #20	MAU2 (ENSCJAG00000039088) #21	SUGP1 (ENSCJAG00000005755) #22	TM6SF2 (ENSCJAG00000039656) #23	HAPLN4 (ENSCJAG00000073329) #24	ENSCJAG00000070942	NCAN (ENSCJAG00000008512) #25	NR2C2AP (ENSCJAG00000019782) #26	RFXANK (ENSCJAG00000019775) #27	BORCS8 (ENSCJAG00000046526) #28	MEF2B (ENSCJAG00000019767) #29	TMEM161A (ENSCJAG00000019759) #30	SLC25A42 (ENSCJAG00000044017) #31	ARMC6 (ENSCJAG00000019747) #32	SUGP2 (ENSCJAG00000019714) #33	HOMER3 (ENSCJAG00000080144) #34	DDX49 (ENSCJAG00000042114) #35	COPE (ENSCJAG00000019706) #36	CERS1 (ENSCJAG00000019660) #37	UPF1 (ENSCJAG00000019627)	COMP (ENSCJAG00000001175)	CRTC1 (ENSCJAG00000007421)	KLHL26 (ENSCJAG00000007445)	TMEM59L (ENSCJAG00000007447)	CRLF1 (ENSCJAG00000007427)	ENSCJAG00000007459	ENSCJAG00000053720	KXD1 (ENSCJAG00000007479)	FKBP8 (ENSCJAG00000039606)	ELL (ENSCJAG00000015279)
Mas night monkey	MODERN SPECIES	1353	NDUFA13 (ENSANAG00000033597) #18	TSSK6 (ENSANAG00000020096) #19	GATAD2A (ENSANAG00000038065) #20	MAU2 (ENSANAG00000026794) #21	SUGP1 (ENSANAG00000028538) #22	TM6SF2 (ENSANAG00000034245) #23	HAPLN4 (ENSANAG00000024057) #24	ENSANAG00000035988 #25	NR2C2AP (ENSANAG00000035166) #26	RFXANK (ENSANAG00000025466) #27	BORCS8 (ENSANAG00000034161) #28	MEF2B (ENSANAG00000020769) #29	TMEM161A (ENSANAG00000034160) #30	SLC25A42 (ENSANAG00000030310) #31	ARMC6 (ENSANAG00000025554) #32	SUGP2 (ENSANAG00000027159) #33	ENSANAG00000020793 #34	DDX49 (ENSANAG00000031415) #35	COPE (ENSANAG00000018604) #36	GDF1 (ENSANAG00000037936)	UPF1 (ENSANAG00000024107)	COMP (ENSANAG00000023447)	ENSANAG00000030890	KLHL26 (ENSANAG00000022024)	TMEM59L (ENSANAG00000037189)	CRLF1 (ENSANAG00000022571)	REX1BD (ENSANAG00000031851)	UBA52 (ENSANAG00000037329)	FKBP8 (ENSANAG00000018877)	ENSANAG00000019584	ELL (ENSANAG00000037567)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Hominidae	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Pan	ANCESTRAL SPECIES	14	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00910000147684	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705.g
Bonobo	MODERN SPECIES	10	ENSPPAG00000016456 #18	TSSK6 (ENSPPAG00000022354) #19	GATAD2A (ENSPPAG00000003218) #20	MAU2 (ENSPPAG00000032359) #21	SUGP1 (ENSPPAG00000037102) #22	TM6SF2 (ENSPPAG00000043499) #23	HAPLN4 (ENSPPAG00000013291) #24	NCAN (ENSPPAG00000003961) #25	NR2C2AP (ENSPPAG00000008303) #26	RFXANK (ENSPPAG00000032045) #27	BORCS8 (ENSPPAG00000033735) #28	MEF2B (ENSPPAG00000029747) #29	TMEM161A (ENSPPAG00000041901) #30	SLC25A42 (ENSPPAG00000036060) #31	ARMC6 (ENSPPAG00000040716) #32	SUGP2 (ENSPPAG00000043787) #33	HOMER3 (ENSPPAG00000037113) #34	DDX49 (ENSPPAG00000035217) #35	COPE (ENSPPAG00000020767) #36	CERS1 (ENSPPAG00000036380) #37	UPF1 (ENSPPAG00000043884)	COMP (ENSPPAG00000040783)	CRTC1 (ENSPPAG00000003288)	KLHL26 (ENSPPAG00000039902)	TMEM59L (ENSPPAG00000029514)	CRLF1 (ENSPPAG00000041635)	ENSPPAG00000039468	REX1BD (ENSPPAG00000043331)	ENSPPAG00000042675	FKBP8 (ENSPPAG00000012972)	ELL (ENSPPAG00000029139)
Chimpanzee	MODERN SPECIES	10	NDUFA13 (ENSPTRG00000010741) #18	ENSPTRG00000043712 #19	GATAD2A (ENSPTRG00000010739) #20	MAU2 (ENSPTRG00000010738) #21	SUGP1 (ENSPTRG00000010737) #22	TM6SF2 (ENSPTRG00000010736) #23	HAPLN4 (ENSPTRG00000033676) #24	NCAN (ENSPTRG00000010734) #25	NR2C2AP (ENSPTRG00000010733) #26	RFXANK (ENSPTRG00000010732) #27	BORCS8 (ENSPTRG00000039907) #28	MEF2B (ENSPTRG00000010731) #29	TMEM161A (ENSPTRG00000010730) #30	SLC25A42 (ENSPTRG00000010729) #31	ARMC6 (ENSPTRG00000010728) #32	SUGP2 (ENSPTRG00000010727) #33	HOMER3 (ENSPTRG00000010726) #34	DDX49 (ENSPTRG00000010725) #35	COPE (ENSPTRG00000010723) #36	CERS1 (ENSPTRG00000039869) #37	GDF1 (ENSPTRG00000050095)	UPF1 (ENSPTRG00000010721)	COMP (ENSPTRG00000010720)	CRTC1 (ENSPTRG00000010719)	KLHL26 (ENSPTRG00000010718)	TMEM59L (ENSPTRG00000010717)	ENSPTRG00000044633	CRLF1 (ENSPTRG00000010716)	REX1BD (ENSPTRG00000010715)	KXD1 (ENSPTRG00000010713)	FKBP8 (ENSPTRG00000010712)
Human	MODERN SPECIES	10	TSSK6 (ENSG00000178093) #19	GATAD2A (ENSG00000167491) #20	MAU2 (ENSG00000129933) #21	SUGP1 (ENSG00000105705) #22	TM6SF2 (ENSG00000213996) #23	HAPLN4 (ENSG00000187664) #24	NCAN (ENSG00000130287) #25	NR2C2AP (ENSG00000184162) #26	RFXANK (ENSG00000064490) #27	BORCS8 (ENSG00000254901) #28	BORCS8-MEF2B (ENSG00000064489)	MEF2B (ENSG00000213999) #29	TMEM161A (ENSG00000064545) #30	SLC25A42 (ENSG00000181035) #31	ARMC6 (ENSG00000105676) #32	SUGP2 (ENSG00000064607) #33	HOMER3 (ENSG00000051128) #34	DDX49 (ENSG00000105671) #35	COPE (ENSG00000105669) #36	CERS1 (ENSG00000223802) #37	GDF1 (ENSG00000130283)	UPF1 (ENSG00000005007)	COMP (ENSG00000105664)	CRTC1 (ENSG00000105662)	KLHL26 (ENSG00000167487)	TMEM59L (ENSG00000105696)	REX1BD (ENSG00000006015)	CRLF1 (ENSG00000006016)	UBA52 (ENSG00000221983)	KXD1 (ENSG00000105700)	FKBP8 (ENSG00000105701)
Gorilla	MODERN SPECIES	10	NDUFA13 (ENSGGOG00000040690) #18	TSSK6 (ENSGGOG00000042656) #19	GATAD2A (ENSGGOG00000005973) #20	MAU2 (ENSGGOG00000002989) #21	SUGP1 (ENSGGOG00000002984) #22	TM6SF2 (ENSGGOG00000002983) #23	HAPLN4 (ENSGGOG00000002981) #24	NCAN (ENSGGOG00000002977) #25	NR2C2AP (ENSGGOG00000012536) #26	RFXANK (ENSGGOG00000012530) #27	BORCS8 (ENSGGOG00000044155) #28	MEF2B (ENSGGOG00000009730) #29	TMEM161A (ENSGGOG00000022481) #30	SLC25A42 (ENSGGOG00000008113) #31	ARMC6 (ENSGGOG00000006708) #32	SUGP2 (ENSGGOG00000013540) #33	HOMER3 (ENSGGOG00000007011) #34	DDX49 (ENSGGOG00000037966) #35	COPE (ENSGGOG00000006987) #36	ENSGGOG00000025662	UPF1 (ENSGGOG00000002608)	COMP (ENSGGOG00000007897)	CRTC1 (ENSGGOG00000000987)	KLHL26 (ENSGGOG00000007063)	TMEM59L (ENSGGOG00000011271)	CRLF1 (ENSGGOG00000010973)	REX1BD (ENSGGOG00000026716)	ENSGGOG00000036627	ENSGGOG00000004628	FKBP8 (ENSGGOG00000012866)	ENSGGOG00000002438
Orangutan	MODERN SPECIES	10	NDUFA13 (ENSPPYG00000036460) #18	TSSK6 (ENSPPYG00000009770) #19	GATAD2A (ENSPPYG00000009769) #20	MAU2 (ENSPPYG00000009767) #21	SUGP1 (ENSPPYG00000009766) #22	TM6SF2 (ENSPPYG00000009765) #23	HAPLN4 (ENSPPYG00000009764) #24	NCAN (ENSPPYG00000009763) #25	NR2C2AP (ENSPPYG00000009762) #26	RFXANK (ENSPPYG00000009761) #27	BORCS8 (ENSPPYG00000039532) #28	MEF2B (ENSPPYG00000009760) #29	TMEM161A (ENSPPYG00000009759) #30	SLC25A42 (ENSPPYG00000009758) #31	ARMC6 (ENSPPYG00000009757) #32	SUGP2 (ENSPPYG00000009756) #33	HOMER3 (ENSPPYG00000035001) #34	DDX49 (ENSPPYG00000009755) #35	COPE (ENSPPYG00000009753) #36	CERS1 (ENSPPYG00000029471) #37	UPF1 (ENSPPYG00000009752)	COMP (ENSPPYG00000036755)	CRTC1 (ENSPPYG00000009751)	KLHL26 (ENSPPYG00000009750)	TMEM59L (ENSPPYG00000009749)	CRLF1 (ENSPPYG00000009748)	REX1BD (ENSPPYG00000009747)	UBA52 (ENSPPYG00000034989)	ENSPPYG00000034496	FKBP8 (ENSPPYG00000009744)	ELL (ENSPPYG00000037377)
Gibbon	MODERN SPECIES		TSSK6 (ENSNLEG00000019216) #19	GATAD2A (ENSNLEG00000006277) #20	MAU2 (ENSNLEG00000026855) #21	SUGP1 (ENSNLEG00000006236) #22	TM6SF2 (ENSNLEG00000006229) #23	HAPLN4 (ENSNLEG00000006225) #24	NCAN (ENSNLEG00000006221) #25	NR2C2AP (ENSNLEG00000006212) #26	RFXANK (ENSNLEG00000006200) #27	ENSNLEG00000006195 #28	MEF2B (ENSNLEG00000006191) #29	ENSNLEG00000006186 #30	SLC25A42 (ENSNLEG00000027898) #31	ENSNLEG00000006185	ARMC6 (ENSNLEG00000006169) #32	SUGP2 (ENSNLEG00000006162) #33	HOMER3 (ENSNLEG00000006154) #34	DDX49 (ENSNLEG00000006136) #35	COPE (ENSNLEG00000006090) #36	GDF1 (ENSNLEG00000006089)	UPF1 (ENSNLEG00000006062)	ENSNLEG00000005980	CRTC1 (ENSNLEG00000006083)	ENSNLEG00000006077	TMEM59L (ENSNLEG00000006075)	REX1BD (ENSNLEG00000027561)	ENSNLEG00000034752	ENSNLEG00000035588	KXD1 (ENSNLEG00000006059)	FKBP8 (ENSNLEG00000006049)	ELL (ENSNLEG00000006044)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Rhinopithecus	ANCESTRAL SPECIES		ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705.g	ENSGT00940000155914
Black snub-nosed monkey	MODERN SPECIES	1576	TSSK6 (ENSRBIG00000020631) #19	ENSRBIG00000029752 #20	MAU2 (ENSRBIG00000036077) #21	SUGP1 (ENSRBIG00000035555) #22	TM6SF2 (ENSRBIG00000035648) #23	HAPLN4 (ENSRBIG00000028696) #24	NCAN (ENSRBIG00000028711) #25	RFXANK (ENSRBIG00000027696) #27	NR2C2AP (ENSRBIG00000035480) #26	BORCS8 (ENSRBIG00000044655) #28	MEF2B (ENSRBIG00000037482) #29	TMEM161A (ENSRBIG00000035635) #30	SLC25A42 (ENSRBIG00000027977) #31	ENSRBIG00000034545	ARMC6 (ENSRBIG00000038109) #32	SUGP2 (ENSRBIG00000020354) #33	HOMER3 (ENSRBIG00000038778) #34	DDX49 (ENSRBIG00000030758) #35	COPE (ENSRBIG00000040843) #36	CERS1 (ENSRBIG00000036984) #37	UPF1 (ENSRBIG00000013894)	COMP (ENSRBIG00000006193)	CRTC1 (ENSRBIG00000036709)	KLHL26 (ENSRBIG00000023916)
Golden snub-nosed monkey	MODERN SPECIES	2586	NDUFA13 (ENSRROG00000043641) #18	TSSK6 (ENSRROG00000027240) #19	ENSRROG00000031855 #20	MAU2 (ENSRROG00000032649) #21	SUGP1 (ENSRROG00000030048) #22	TM6SF2 (ENSRROG00000036675) #23	HAPLN4 (ENSRROG00000029649) #24	NCAN (ENSRROG00000037872) #25	NR2C2AP (ENSRROG00000033994) #26	RFXANK (ENSRROG00000028283) #27	BORCS8 (ENSRROG00000045680) #28	MEF2B (ENSRROG00000033740) #29	TMEM161A (ENSRROG00000024629) #30	SLC25A42 (ENSRROG00000040352) #31	ARMC6 (ENSRROG00000034739) #32	SUGP2 (ENSRROG00000029264) #33	HOMER3 (ENSRROG00000038822) #34	DDX49 (ENSRROG00000032460) #35	COPE (ENSRROG00000032396) #36	CERS1 (ENSRROG00000038529) #37	GDF1 (ENSRROG00000041769)	UPF1 (ENSRROG00000040935)	COMP (ENSRROG00000043878)	CRTC1 (ENSRROG00000039912)	KLHL26 (ENSRROG00000030821)	TMEM59L (ENSRROG00000024021)	CRLF1 (ENSRROG00000030939)	REX1BD (ENSRROG00000030965)	UBA52 (ENSRROG00000033884)	ENSRROG00000044752	FKBP8 (ENSRROG00000022396)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Vervet Monkey	MODERN SPECIES	25	NDUFA13 (ENSCSAG00000005084) #18	TSSK6 (ENSCSAG00000018500) #19	GATAD2A (ENSCSAG00000005096) #20	MAU2 (ENSCSAG00000005122) #21	SUGP1 (ENSCSAG00000005148) #22	TM6SF2 (ENSCSAG00000005157) #23	HAPLN4 (ENSCSAG00000005162) #24	NCAN (ENSCSAG00000005190) #25	NR2C2AP (ENSCSAG00000005205) #26	RFXANK (ENSCSAG00000005210) #27	BORCS8 (ENSCSAG00000005214) #28	MEF2B (ENSCSAG00000005217) #29	TMEM161A (ENSCSAG00000005220) #30	SLC25A42 (ENSCSAG00000005223) #31	ARMC6 (ENSCSAG00000005225) #32	SUGP2 (ENSCSAG00000005226) #33	HOMER3 (ENSCSAG00000005233) #34	DDX49 (ENSCSAG00000005251) #35	COPE (ENSCSAG00000005262) #36	CERS1 (ENSCSAG00000005267) #37	GDF1 (ENSCSAG00000005273)	UPF1 (ENSCSAG00000005276)	COMP (ENSCSAG00000005292)	CRTC1 (ENSCSAG00000005304)	KLHL26 (ENSCSAG00000005309)	TMEM59L (ENSCSAG00000005314)	CRLF1 (ENSCSAG00000005321)	REX1BD (ENSCSAG00000005329)	UBA52 (ENSCSAG00000005332)	KXD1 (ENSCSAG00000005336)	FKBP8 (ENSCSAG00000005342)
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00910000148304	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Pig-tailed macaque	MODERN SPECIES	76	TSSK6 (ENSMNEG00000009045) #19	ENSMNEG00000043233 #20	MAU2 (ENSMNEG00000034232) #21	SUGP1 (ENSMNEG00000042010) #22	TM6SF2 (ENSMNEG00000043588) #23	HAPLN4 (ENSMNEG00000034804) #24	NCAN (ENSMNEG00000029669) #25	RFXANK (ENSMNEG00000025165) #27	NR2C2AP (ENSMNEG00000037479) #26	BORCS8 (ENSMNEG00000033374) #28	MEF2B (ENSMNEG00000041102) #29	TMEM161A (ENSMNEG00000027465) #30	SLC25A42 (ENSMNEG00000043911) #31	ENSMNEG00000030397	ARMC6 (ENSMNEG00000043051) #32	SUGP2 (ENSMNEG00000043062) #33	HOMER3 (ENSMNEG00000042042) #34	DDX49 (ENSMNEG00000029654) #35	COPE (ENSMNEG00000031787) #36	GDF1 (ENSMNEG00000041111)	UPF1 (ENSMNEG00000000046)	COMP (ENSMNEG00000037024)	CRTC1 (ENSMNEG00000021530)	KLHL26 (ENSMNEG00000045346)	TMEM59L (ENSMNEG00000044854)	CRLF1 (ENSMNEG00000033002)	REX1BD (ENSMNEG00000045352)	UBA52 (ENSMNEG00000032643)	FKBP8 (ENSMNEG00000031077)	ELL (ENSMNEG00000044645)	ISYNA1 (ENSMNEG00000044547)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT01100000263493.a.a.a.b.a.a.b.a.a.a.b	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192
Rhesus	MODERN SPECIES	10	CILP2 (ENSMMUG00000011352) #16	YJEFN3 (ENSMMUG00000011351) #17	TSSK6 (ENSMMUG00000049072) #19	GATAD2A (ENSMMUG00000003164) #20	MAU2 (ENSMMUG00000008931) #21	SUGP1 (ENSMMUG00000028834) #22	TM6SF2 (ENSMMUG00000008576) #23	HAPLN4 (ENSMMUG00000008578) #24	NCAN (ENSMMUG00000062498) #25	NR2C2AP (ENSMMUG00000010723) #26	RFXANK (ENSMMUG00000010722) #27	BORCS8 (ENSMMUG00000018368) #29	TMEM161A (ENSMMUG00000018367) #30	SLC25A42 (ENSMMUG00000019669) #31	ARMC6 (ENSMMUG00000019668) #32	SUGP2 (ENSMMUG00000019665) #33	HOMER3 (ENSMMUG00000023294) #34	DDX49 (ENSMMUG00000023293) #35	COPE (ENSMMUG00000023291) #36	CERS1 (ENSMMUG00000059247) #37	GDF1 (ENSMMUG00000023290)	UPF1 (ENSMMUG00000023286)	ENSMMUG00000056644	COMP (ENSMMUG00000006511)	CRTC1 (ENSMMUG00000006509)	KLHL26 (ENSMMUG00000064204)	CRLF1 (ENSMMUG00000060102)	TMEM59L (ENSMMUG00000009988)	ENSMMUG00000054512	UBA52 (ENSMMUG00000064485)	KXD1 (ENSMMUG00000016085)
Crab-eating macaque	MODERN SPECIES	10	PBX4 (ENSMFAG00000031948) #15	CILP2 (ENSMFAG00000064577) #16	YJEFN3 (ENSMFAG00000011503) #17	ENSMFAG00000002152 #20	MAU2 (ENSMFAG00000041829) #21	SUGP1 (ENSMFAG00000031157) #22	TM6SF2 (ENSMFAG00000006917) #23	HAPLN4 (ENSMFAG00000029816) #24	NCAN (ENSMFAG00000043588) #25	NR2C2AP (ENSMFAG00000042311) #26	RFXANK (ENSMFAG00000003753) #27	MEF2B (ENSMFAG00000032755) #29	SLC25A42 (ENSMFAG00000039473) #31	TMEM161A (ENSMFAG00000043553) #30	ARMC6 (ENSMFAG00000000505) #32	SUGP2 (ENSMFAG00000040352) #33	HOMER3 (ENSMFAG00000031509) #34	DDX49 (ENSMFAG00000044697) #35	COPE (ENSMFAG00000038870) #36	GDF1 (ENSMFAG00000064570)	CERS1 (ENSMFAG00000044990) #37	ENSMFAG00000065281	ENSMFAG00000037748	ENSMFAG00000052968	ENSMFAG00000004008	CRTC1 (ENSMFAG00000045375)	KLHL26 (ENSMFAG00000062634)	ENSMFAG00000044055	ENSMFAG00000045477	CRLF1 (ENSMFAG00000001307)	REX1BD (ENSMFAG00000044115)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00530000064192	ENSGT00940000156705.g
Olive baboon	MODERN SPECIES	12	NDUFA13 (ENSPANG00000001628) #18	TSSK6 (ENSPANG00000005919) #19	GATAD2A (ENSPANG00000011632) #20	MAU2 (ENSPANG00000002876) #21	SUGP1 (ENSPANG00000014398) #22	TM6SF2 (ENSPANG00000017375) #23	HAPLN4 (ENSPANG00000004385) #24	NCAN (ENSPANG00000017942) #25	NR2C2AP (ENSPANG00000017708) #26	RFXANK (ENSPANG00000011633) #27	BORCS8 (ENSPANG00000034354) #28	MEF2B (ENSPANG00000023043) #29	TMEM161A (ENSPANG00000023920) #30	SLC25A42 (ENSPANG00000004441) #31	ARMC6 (ENSPANG00000002531) #32	SUGP2 (ENSPANG00000004442) #33	HOMER3 (ENSPANG00000004386) #34	DDX49 (ENSPANG00000003161) #35	COPE (ENSPANG00000002532) #36	CERS1 (ENSPANG00000005280) #37	GDF1 (ENSPANG00000004387)	UPF1 (ENSPANG00000008847)	COMP (ENSPANG00000004388)	CRTC1 (ENSPANG00000014162)	KLHL26 (ENSPANG00000023921)	TMEM59L (ENSPANG00000018010)	CRLF1 (ENSPANG00000011399)	REX1BD (ENSPANG00000032734)	UBA52 (ENSPANG00000048839)	KXD1 (ENSPANG00000004389)	FKBP8 (ENSPANG00000012120)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00390000000719 #18	ENSGT00940000160464 #19	ENSGT00390000004097.a.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a.n.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856.d #28	ENSGT00940000160699 #29	ENSGT00390000000672.a.a #30	ENSGT00940000158163 #31	ENSGT00390000002913 #32	ENSGT00410000025695.b #33	ENSGT00940000158081 #34	ENSGT00730000111231 #35	ENSGT00390000003478 #36	ENSGT01030000234515.b #37	ENSGT00940000162926	ENSGT00940000157413	ENSGT00940000162169	ENSGT00390000010652.D.b	ENSGT00940000159238	ENSGT00390000008279.b	ENSGT00940000156569.a.b	ENSGT00390000011631	ENSGT00940000153593.c.a	ENSGT00940000156705.g	ENSGT00940000155914
Drill	MODERN SPECIES	160	NDUFA13 (ENSMLEG00000027225) #18	TSSK6 (ENSMLEG00000010320) #19	GATAD2A (ENSMLEG00000040547) #20	MAU2 (ENSMLEG00000035371) #21	SUGP1 (ENSMLEG00000043364) #22	TM6SF2 (ENSMLEG00000027647) #23	HAPLN4 (ENSMLEG00000043866) #24	NCAN (ENSMLEG00000035960) #25	NR2C2AP (ENSMLEG00000026610) #26	RFXANK (ENSMLEG00000007628) #27	BORCS8 (ENSMLEG00000036175) #28	MEF2B (ENSMLEG00000002780) #29	TMEM161A (ENSMLEG00000041570) #30	SLC25A42 (ENSMLEG00000038599) #31	ARMC6 (ENSMLEG00000039585) #32	SUGP2 (ENSMLEG00000036719) #33	HOMER3 (ENSMLEG00000042234) #34	DDX49 (ENSMLEG00000042550) #35	COPE (ENSMLEG00000042923) #36	CERS1 (ENSMLEG00000020659) #37	UPF1 (ENSMLEG00000028404)	COMP (ENSMLEG00000028753)	CRTC1 (ENSMLEG00000044311)	KLHL26 (ENSMLEG00000038620)	TMEM59L (ENSMLEG00000032687)	CRLF1 (ENSMLEG00000041126)	REX1BD (ENSMLEG00000041099)	UBA52 (ENSMLEG00000038811)	FKBP8 (ENSMLEG00000029078)	ELL (ENSMLEG00000023490)	ISYNA1 (ENSMLEG00000033928)
Sooty mangabey	MODERN SPECIES	347	NDUFA13 (ENSCATG00000038956) #18	TSSK6 (ENSCATG00000003439) #19	ENSCATG00000035199 #20	MAU2 (ENSCATG00000015302) #21	SUGP1 (ENSCATG00000033059) #22	TM6SF2 (ENSCATG00000038371) #23	HAPLN4 (ENSCATG00000033215) #24	NCAN (ENSCATG00000033037) #25	NR2C2AP (ENSCATG00000035313) #26	RFXANK (ENSCATG00000032949) #27	BORCS8 (ENSCATG00000034039) #28	MEF2B (ENSCATG00000031174) #29	TMEM161A (ENSCATG00000036119) #30	SLC25A42 (ENSCATG00000035155) #31	ARMC6 (ENSCATG00000032065) #32	SUGP2 (ENSCATG00000029755) #33	HOMER3 (ENSCATG00000036483) #34	DDX49 (ENSCATG00000032577) #35	COPE (ENSCATG00000038467) #36	CERS1 (ENSCATG00000033850) #37	GDF1 (ENSCATG00000033208)	UPF1 (ENSCATG00000040306)	ENSCATG00000029785	COMP (ENSCATG00000021027)	CRTC1 (ENSCATG00000037923)	KLHL26 (ENSCATG00000040338)	TMEM59L (ENSCATG00000031976)	CRLF1 (ENSCATG00000031612)	REX1BD (ENSCATG00000032246)	UBA52 (ENSCATG00000032279)	FKBP8 (ENSCATG00000034787)
Cyclostomata	ANCESTRAL SPECIES	1273															ENSGT00950000182920.b.b	ENSGT00410000025695 #33
Lamprey	MODERN SPECIES	115										ENSPMAG00000009267	ENSPMAG00000009274	ENSPMAG00000009275	ENSPMAG00000009276	ENSPMAG00000009319	ENSPMAG00000009326	SUGP1 (ENSPMAG00000009332) #33	PLK3 (ENSPMAG00000009338)	ENSPMAG00000009346	ENSPMAG00000009354	wdr55 (ENSPMAG00000009359)	S1PR4 (ENSPMAG00000009363)
Hagfish	MODERN SPECIES	1422	ENSEBUG00000008414	ENSEBUG00000003934	ENSEBUG00000003977	clpxa (ENSEBUG00000003847)	ENSEBUG00000003017	senp8 (ENSEBUG00000011133)	ENSEBUG00000001915	ENSEBUG00000002808	ENSEBUG00000003013	gnrhr2 (ENSEBUG00000002641)	ENSEBUG00000005207	ENSEBUG00000004081	ENSEBUG00000010769	ENSEBUG00000002080	ENSEBUG00000003627	ENSEBUG00000016994 #33	ENSEBUG00000009596