Archelosauria ANCESTRAL SPECIES 20 ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00960000189525 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Cryptodira ANCESTRAL SPECIES 19 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00960000189525 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Testudinoidea ANCESTRAL SPECIES 18 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00960000189525 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Emydidae ANCESTRAL SPECIES 14 ENSGT00940000165052 ENSGT00940000160748 #7 ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Three-toed box turtle MODERN SPECIES 92 NR2F6 (ENSTMTG00000003288) #7 ENSTMTG00000003274 #8 BABAM1 (ENSTMTG00000003264) #9 ANKLE1 (ENSTMTG00000003176) #10 ABHD8 (ENSTMTG00000003154) #11 MRPL34 (ENSTMTG00000003147) #12 DDA1 (ENSTMTG00000003127) #13 ANO8 (ENSTMTG00000003079) #14 GTPBP3 (ENSTMTG00000003053) #15 ENSTMTG00000003038 #16 CILP2 (ENSTMTG00000003015) #17 YJEFN3 (ENSTMTG00000013384) #18 NDUFA13 (ENSTMTG00000013371) #19 GATAD2A (ENSTMTG00000013318) #20 MAU2 (ENSTMTG00000013280) #21 SUGP1 (ENSTMTG00000013266) #22 TM6SF2 (ENSTMTG00000013253) #23 HAPLN4 (ENSTMTG00000013225) #24 NCAN (ENSTMTG00000013156) #25 NR2C2AP (ENSTMTG00000013134) #26 RFXANK (ENSTMTG00000013105) #27 BORCS8 (ENSTMTG00000013093) #28 ENSTMTG00000013028 #29 MEF2B (ENSTMTG00000013005) #30 TMEM161A (ENSTMTG00000012984) #31 SLC25A42 (ENSTMTG00000012962) #32 ARMC6 (ENSTMTG00000012947) #33 SUGP2 (ENSTMTG00000012920) #34 ENSTMTG00000012889 #35 HOMER3 (ENSTMTG00000012853) #36 DDX49 (ENSTMTG00000012790) #37 painted turtle MODERN SPECIES 771 ENSCPBG00000012401 ENSCPBG00000012402 NR2F6 (ENSCPBG00000012404) #7 BABAM1 (ENSCPBG00000012410) #9 ANKLE1 (ENSCPBG00000012416) #10 ABHD8 (ENSCPBG00000012422) #11 MRPL34 (ENSCPBG00000012424) #12 DDA1 (ENSCPBG00000012426) #13 ANO8 (ENSCPBG00000012431) #14 GTPBP3 (ENSCPBG00000012434) #15 ENSCPBG00000012437 #16 CILP2 (ENSCPBG00000012445) #17 YJEFN3 (ENSCPBG00000012447) #18 GATAD2A (ENSCPBG00000012450) #20 MAU2 (ENSCPBG00000012453) #21 SUGP1 (ENSCPBG00000012455) #22 TM6SF2 (ENSCPBG00000012458) #23 HAPLN4 (ENSCPBG00000012460) #24 NCAN (ENSCPBG00000012461) #25 NR2C2AP (ENSCPBG00000012463) #26 RFXANK (ENSCPBG00000012464) #27 BORCS8 (ENSCPBG00000012467) #28 ENSCPBG00000012469 #29 MEF2B (ENSCPBG00000012471) #30 TMEM161A (ENSCPBG00000012479) #31 SLC25A42 (ENSCPBG00000012483) #32 ARMC6 (ENSCPBG00000012485) #33 SUGP2 (ENSCPBG00000012487) #34 ENSCPBG00000012490 #35 HOMER3 (ENSCPBG00000012496) #36 DDX49 (ENSCPBG00000012500) #37 Testudinidae ANCESTRAL SPECIES 20 ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719.a #19 ENSGT00960000189525 ENSGT00390000000719.b #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Abingdon island giant tortoise MODERN SPECIES ENSCABG00000004188 BABAM1 (ENSCABG00000004192) #9 ANKLE1 (ENSCABG00000004202) #10 ABHD8 (ENSCABG00000004206) #11 MRPL34 (ENSCABG00000004210) #12 DDA1 (ENSCABG00000004212) #13 ANO8 (ENSCABG00000004215) #14 GTPBP3 (ENSCABG00000004223) #15 ENSCABG00000004225 #16 CILP2 (ENSCABG00000004232) #17 YJEFN3 (ENSCABG00000004238) #18 ENSCABG00000004241 ENSCABG00000004244 #19 GATAD2A (ENSCABG00000004245) #20 MAU2 (ENSCABG00000004254) #21 SUGP1 (ENSCABG00000004858) #22 TM6SF2 (ENSCABG00000004866) #23 HAPLN4 (ENSCABG00000004875) #24 NCAN (ENSCABG00000004882) #25 NR2C2AP (ENSCABG00000004889) #26 RFXANK (ENSCABG00000004891) #27 BORCS8 (ENSCABG00000004894) #28 ENSCABG00000004899 #29 MEF2B (ENSCABG00000004901) #30 TMEM161A (ENSCABG00000004904) #31 SLC25A42 (ENSCABG00000004955) #32 FLRT2 (ENSCABG00000004957) Goode s thornscrub tortoise MODERN SPECIES 14 ENSGEVG00005006831 ENSGEVG00005006786 NR2F6 (ENSGEVG00005006760) #7 BABAM1 (ENSGEVG00005006735) #9 ANKLE1 (ENSGEVG00005006566) #10 ABHD8 (ENSGEVG00005006483) #11 MRPL34 (ENSGEVG00005006469) #12 DDA1 (ENSGEVG00005006430) #13 ANO8 (ENSGEVG00005006292) #14 GTPBP3 (ENSGEVG00005006249) #15 CILP2 (ENSGEVG00005006211) #17 YJEFN3 (ENSGEVG00005006180) #18 NDUFA13 (ENSGEVG00005006122) #19 GATAD2A (ENSGEVG00005006074) #20 MAU2 (ENSGEVG00005005539) #21 SUGP1 (ENSGEVG00005005333) #22 TM6SF2 (ENSGEVG00005005276) #23 HAPLN4 (ENSGEVG00005005235) #24 NCAN (ENSGEVG00005005147) #25 NR2C2AP (ENSGEVG00005005076) #26 RFXANK (ENSGEVG00005005039) #27 BORCS8 (ENSGEVG00005005013) #28 ENSGEVG00005004987 #29 MEF2B (ENSGEVG00005004959) #30 TMEM161A (ENSGEVG00005004899) #31 SLC25A42 (ENSGEVG00005004855) #32 ARMC6 (ENSGEVG00005004824) #33 SUGP2 (ENSGEVG00005004782) #34 ENSGEVG00005004681 #35 HOMER3 (ENSGEVG00005004624) #36 DDX49 (ENSGEVG00005004539) #37 Chinese turtle MODERN SPECIES 1790 CCDC124 (ENSPSIG00000013042) KCNN1 (ENSPSIG00000013049) ENSPSIG00000013072 NR2F6 (ENSPSIG00000013773) #7 BABAM1 (ENSPSIG00000014350) #9 ANKLE1 (ENSPSIG00000014550) #10 ABHD8 (ENSPSIG00000015080) #11 MRPL34 (ENSPSIG00000001128) #12 DDA1 (ENSPSIG00000015105) #13 GTPBP3 (ENSPSIG00000015510) #15 CILP2 (ENSPSIG00000015529) #17 YJEFN3 (ENSPSIG00000015540) #18 NDUFA13 (ENSPSIG00000015655) #19 GATAD2A (ENSPSIG00000015717) #20 MAU2 (ENSPSIG00000016573) #21 SUGP1 (ENSPSIG00000016889) #22 TM6SF2 (ENSPSIG00000017375) #23 HAPLN4 (ENSPSIG00000017388) #24 NCAN (ENSPSIG00000017408) #25 ENSPSIG00000017603 ENSPSIG00000001137 NR2C2AP (ENSPSIG00000017608) #26 RFXANK (ENSPSIG00000017645) #27 BORCS8 (ENSPSIG00000006585) #28 TMEM161A (ENSPSIG00000006789) #31 SLC25A42 (ENSPSIG00000007452) #32 ARMC6 (ENSPSIG00000008070) #33 SUGP2 (ENSPSIG00000008256) #34 ENSPSIG00000008490 #35 HOMER3 (ENSPSIG00000008524) #36 DDX49 (ENSPSIG00000008625) #37 Archosauria ANCESTRAL SPECIES 16 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Australian saltwater crocodile MODERN SPECIES 3 PCSK4 (ENSCPRG00005015619) REEP6 (ENSCPRG00005015622) ENSCPRG00005015625 THOP1 (ENSCPRG00005015627) SGTA (ENSCPRG00005015629) SLC39A3 (ENSCPRG00005015630) DIRAS1 (ENSCPRG00005015632) GNG7 (ENSCPRG00005015637) GADD45B (ENSCPRG00005015639) ENSCPRG00005015644 CARTPT (ENSCPRG00005015645) YJEFN3 (ENSCPRG00005015647) #18 NDUFA13 (ENSCPRG00005015651) #19 GATAD2A (ENSCPRG00005015653) #20 MAU2 (ENSCPRG00005015658) #21 SUGP1 (ENSCPRG00005015667) #22 TM6SF2 (ENSCPRG00005015672) #23 HAPLN4 (ENSCPRG00005015677) #24 NR2C2AP (ENSCPRG00005015681) #26 RFXANK (ENSCPRG00005015684) #27 BORCS8 (ENSCPRG00005015689) #28 ENSCPRG00005015692 #29 MEF2B (ENSCPRG00005015695) #30 TMEM161A (ENSCPRG00005015699) #31 SLC25A42 (ENSCPRG00005015701) #32 ARMC6 (ENSCPRG00005015704) #33 SUGP2 (ENSCPRG00005015708) #34 ENSCPRG00005015709 #35 HOMER3 (ENSCPRG00005015713) #36 DDX49 (ENSCPRG00005015719) #37 COPE (ENSCPRG00005015722) Aves ANCESTRAL SPECIES 20 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 African ostrich MODERN SPECIES 1058 GATAD2A (ENSSCUG00000019070) #20 MAU2 (ENSSCUG00000019069) #21 SUGP1 (ENSSCUG00000019068) #22 TM6SF2 (ENSSCUG00000019067) #23 NR2C2AP (ENSSCUG00000019065) #26 RFXANK (ENSSCUG00000019064) #27 BORCS8 (ENSSCUG00000019063) #28 ENSSCUG00000019062 #29 Neognathae ANCESTRAL SPECIES 21 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Galloanserae ANCESTRAL SPECIES 20 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649.d #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Phasianidae ANCESTRAL SPECIES 19 ENSGT00940000160748 #7 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649.d #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Phasianidae_b ANCESTRAL SPECIES 20 ENSGT00940000160748 #7 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649.d #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Chicken MODERN SPECIES 20 NR2F6 (ENSGALG00010028581) #7 USHBP1 (ENSGALG00010028583) BABAM1 (ENSGALG00010028586) #9 ANKLE1 (ENSGALG00010028587) #10 ABHD8 (ENSGALG00010028588) #11 DDA1 (ENSGALG00010028596) #13 ANO8 (ENSGALG00010028601) #14 GTPBP3 (ENSGALG00010028605) #15 PLVAP (ENSGALG00010028607) ENSGALG00010028610 CILP2 (ENSGALG00010028510) #17 YJEFN3 (ENSGALG00010028511) #18 NDUFA13 (ENSGALG00010028512) #19 GATAD2A (ENSGALG00010028516) #20 MAU2 (ENSGALG00010028518) #21 SUGP1 (ENSGALG00010028523) #22 TM6SF2 (ENSGALG00010028525) #23 HAPLN4 (ENSGALG00010028379) #24 NCAN (ENSGALG00010028386) #25 NR2C2AP (ENSGALG00010028430) #26 RFXANK (ENSGALG00010028432) #27 BORCS8 (ENSGALG00010028439) #28 ENSGALG00010028443 #29 MEF2B (ENSGALG00010028444) #30 TMEM161A (ENSGALG00010028131) #31 SLC25A42 (ENSGALG00010028147) #32 ARMC6 (ENSGALG00010028150) #33 SUGP2 (ENSGALG00010028124) #34 ENSGALG00010028446 #34 ENSGALG00010028152 #35 HOMER3 (ENSGALG00010028744) #36 Turkey MODERN SPECIES 23 ENSMGAG00000002493 ENSMGAG00000002489 ENSMGAG00000002388 ENSMGAG00000018914 ENSMGAG00000019234 USHBP1 (ENSMGAG00000019092) ANKLE1 (ENSMGAG00000021903) #10 ABHD8 (ENSMGAG00000001860) #11 DDA1 (ENSMGAG00000003919) #13 ANO8 (ENSMGAG00000003374) #14 GTPBP3 (ENSMGAG00000020218) #15 ENSMGAG00000021153 #16 YJEFN3 (ENSMGAG00000018230) #18 GATAD2A (ENSMGAG00000004036) #20 MAU2 (ENSMGAG00000004012) #21 SUGP1 (ENSMGAG00000003967) #22 TM6SF2 (ENSMGAG00000003934) #23 ENSMGAG00000020085 ENSMGAG00000004088 NDUFS7 (ENSMGAG00000004106) GAMT (ENSMGAG00000022259) DAZAP1 (ENSMGAG00000020659) RPS15 (ENSMGAG00000004229) APC2 (ENSMGAG00000018235) ENSMGAG00000004216 ENSMGAG00000004238 ENSMGAG00000022068 ENSMGAG00000004246 ENSMGAG00000004273 THOP1 (ENSMGAG00000004287) SGTA (ENSMGAG00000004305) Japanese quail MODERN SPECIES 20 NR2F6 (ENSCJPG00005011133) #7 USHBP1 (ENSCJPG00005011140) BABAM1 (ENSCJPG00005011141) #9 ANKLE1 (ENSCJPG00005011145) #10 ABHD8 (ENSCJPG00005011146) #11 MRPL34 (ENSCJPG00005011147) #12 DDA1 (ENSCJPG00005011149) #13 ANO8 (ENSCJPG00005011150) #14 GTPBP3 (ENSCJPG00005011151) #15 ENSCJPG00005011152 #16 CILP2 (ENSCJPG00005011154) #17 YJEFN3 (ENSCJPG00005011155) #18 NDUFA13 (ENSCJPG00005011156) #19 GATAD2A (ENSCJPG00005011157) #20 MAU2 (ENSCJPG00005011158) #21 SUGP1 (ENSCJPG00005011161) #22 TM6SF2 (ENSCJPG00005011166) #23 HAPLN4 (ENSCJPG00005011167) #24 NCAN (ENSCJPG00005011168) #25 ENSCJPG00005011170 #26 RFXANK (ENSCJPG00005011171) #27 BORCS8 (ENSCJPG00005011172) #28 ENSCJPG00005011173 #29 MEF2B (ENSCJPG00005011174) #30 ENSCJPG00005011175 SLC25A42 (ENSCJPG00005011178) #32 ARMC6 (ENSCJPG00005011186) #33 SUGP2 (ENSCJPG00005011187) #34 ENSCJPG00005011188 #35 ENSCJPG00005011189 #36 ENSCJPG00005011190 #36 Anatidae ANCESTRAL SPECIES 71 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649.d #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000158081 #36 ENSGT00730000111231 #37 ENSGT00390000003478 Pink-footed goose MODERN SPECIES 308 ENSABRG00000002971 #16 CILP2 (ENSABRG00000003000) #17 YJEFN3 (ENSABRG00000003014) #18 NDUFA13 (ENSABRG00000003036) #19 GATAD2A (ENSABRG00000003048) #20 MAU2 (ENSABRG00000003093) #21 SUGP1 (ENSABRG00000003136) #22 TM6SF2 (ENSABRG00000003169) #23 HAPLN4 (ENSABRG00000003196) #24 NCAN (ENSABRG00000003206) #25 ENSABRG00000003239 #26 RFXANK (ENSABRG00000003275) #27 BORCS8 (ENSABRG00000003310) #28 ENSABRG00000003339 #29 MEF2B (ENSABRG00000003346) #30 TMEM161A (ENSABRG00000003380) #31 SLC25A42 (ENSABRG00000003394) #32 ARMC6 (ENSABRG00000003410) #33 SUGP2 (ENSABRG00000003433) #34 HOMER3 (ENSABRG00000003480) #36 DDX49 (ENSABRG00000003533) #37 COPE (ENSABRG00000003553) Duck MODERN SPECIES 20 ENSAPLG00000028560 ENSAPLG00000029543 GNA11 (ENSAPLG00000004066) ENSAPLG00000019679 ENSAPLG00000004622 S1PR4 (ENSAPLG00000001591) NCLN (ENSAPLG00000004844) CELF5 (ENSAPLG00000005174) HSD11B1L (ENSAPLG00000005717) MICOS13 (ENSAPLG00000001598) ENSAPLG00000005780 ENSAPLG00000006355 ENSAPLG00000020158 ENSAPLG00000019522 MAU2 (ENSAPLG00000002818) #21 SUGP1 (ENSAPLG00000002500) #22 HAPLN4 (ENSAPLG00000000916) #24 ENSAPLG00000017029 #25 NR2C2AP (ENSAPLG00000016443) #26 RFXANK (ENSAPLG00000016423) #27 ENSAPLG00000025930 TMEM161A (ENSAPLG00000006657) #31 SLC25A42 (ENSAPLG00000006582) #32 ARMC6 (ENSAPLG00000006480) #33 SUGP2 (ENSAPLG00000006469) #34 HOMER3 (ENSAPLG00000008170) #36 COPE (ENSAPLG00000008757) CERS1 (ENSAPLG00000008945) ENSAPLG00000009148 UPF1 (ENSAPLG00000009175) ENSAPLG00000009709 Neognathae_b DUPLICATION Neognathae_b ANCESTRAL SPECIES ENSGT00410000025695.a.g #22 Passeriformes ANCESTRAL SPECIES ENSGT00410000025695.a.g #22 Passeriformes_d ANCESTRAL SPECIES ENSGT00410000025695.a.g #22 Flycatcher MODERN SPECIES 20 DAZAP1 (ENSFALG00000014010) RPS15 (ENSFALG00000014013) ENSFALG00000027576 ENSFALG00000014022 ENSFALG00000028718 ENSFALG00000014020 ENSFALG00000014025 ENSFALG00000014030 THOP1 (ENSFALG00000009169) SGTA (ENSFALG00000027653) ENSFALG00000025438 SLC39A3 (ENSFALG00000027233) DIRAS1 (ENSFALG00000026581) ENSFALG00000026177 #19 ENSFALG00000027214 ENSFALG00000010583 #22 TM6SF2 (ENSFALG00000028745) #23 HAPLN4 (ENSFALG00000025367) #24 NCAN (ENSFALG00000008279) #25 NR2C2AP (ENSFALG00000008269) #26 ENSFALG00000027827 ENSFALG00000009275 #36 ENSFALG00000027136 COPE (ENSFALG00000009287) CERS1 (ENSFALG00000009299) UPF1 (ENSFALG00000009312) ENSFALG00000009345 ENSFALG00000025225 CRTC1 (ENSFALG00000009377) KLHL26 (ENSFALG00000014947) ENSFALG00000028577 Passeriformes_g ANCESTRAL SPECIES ENSGT00410000025695.a.g #22 Passeroidea ANCESTRAL SPECIES ENSGT00410000025695.a.g #22 Common canary MODERN SPECIES 173 ENSSCAG00000002718 #20 ENSSCAG00000002712 MAU2 (ENSSCAG00000002706) #21 ENSSCAG00000002704 #22 ENSSCAG00000002697 #22 Neognathae_b ANCESTRAL SPECIES 22 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Passeriformes ANCESTRAL SPECIES 34 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000158081 #36 ENSGT00730000111231 #37 ENSGT00390000003478 Great tit MODERN SPECIES 282 MAU2 (ENSPMJG00000001205) #21 ENSPMJG00000001215 #22 TM6SF2 (ENSPMJG00000001219) #23 HAPLN4 (ENSPMJG00000001224) #24 NCAN (ENSPMJG00000001279) #25 ENSPMJG00000001294 #26 ENSPMJG00000001342 #27 BORCS8 (ENSPMJG00000001351) #28 ENSPMJG00000001365 #29 MEF2B (ENSPMJG00000001372) #30 ENSPMJG00000001384 #31 Passeriformes_d ANCESTRAL SPECIES 35 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019.c #14 ENSGT00390000016851 #15 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000158081 #36 ENSGT00730000111231 #37 ENSGT00390000003478 Passeriformes_g ANCESTRAL SPECIES 39 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019.c #14 ENSGT00390000016851 #15 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000158081 #36 ENSGT00730000111231 #37 ENSGT00390000003478 ENSGT01030000234515.b Passeroidea ANCESTRAL SPECIES 38 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019.c #14 ENSGT00390000016851 #15 ENSGT00970000194286 ENSGT00390000008152.B.a #17 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT01060000249150 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000158081 #36 ENSGT00730000111231 #37 ENSGT00390000003478 ENSGT01030000234515.b Zebra finch MODERN SPECIES 21 ANO8 (ENSTGUG00000021968) #14 ENSTGUG00000021258 #15 ENSTGUG00000019139 ENSTGUG00000023781 ENSTGUG00000024009 #18 ENSTGUG00000029553 #18 NDUFA13 (ENSTGUG00000027276) #19 GATAD2A (ENSTGUG00000013885) #20 MAU2 (ENSTGUG00000013909) #21 ENSTGUG00000024768 ENSTGUG00000015926 #12 ENSTGUG00000021489 #13 ENSTGUG00000020486 #15 ENSTGUG00000026134 CILP2 (ENSTGUG00000019631) #17 SUGP1 (ENSTGUG00000013941) #22 TM6SF2 (ENSTGUG00000013966) #23 HAPLN4 (ENSTGUG00000019161) #24 NCAN (ENSTGUG00000019059) #25 ENSTGUG00000020853 #26 RFXANK (ENSTGUG00000014033) #27 ENSTGUG00000024488 #28 MEF2B (ENSTGUG00000022364) #30 ENSTGUG00000023122 TMEM161A (ENSTGUG00000025437) #31 SLC25A42 (ENSTGUG00000020561) #32 ARMC6 (ENSTGUG00000001090) #33 SUGP2 (ENSTGUG00000001088) #34 HOMER3 (ENSTGUG00000001080) #36 DDX49 (ENSTGUG00000001072) #37 ENSTGUG00000029565 Common canary MODERN SPECIES 173 ENSSCAG00000002718 #20 ENSSCAG00000002712 MAU2 (ENSSCAG00000002706) #21 ENSSCAG00000002704 #22 ENSSCAG00000002697 #22 Medium ground finch MODERN SPECIES 522 MAU2 (ENSGFOG00000009789) #21 ENSGFOG00000009783 SUGP1 (ENSGFOG00000009468) #22 ENSGFOG00000009453 #23 HAPLN4 (ENSGFOG00000009448) #24 Flycatcher MODERN SPECIES 444 ENSFALG00000010868 #21 ENSFALG00000024908 #22 Neognathae_c ANCESTRAL SPECIES 24 ENSGT00940000160748 #7 ENSGT00530000063974.a ENSGT00390000016934 #9 ENSGT00510000049316 #10 ENSGT00390000007336 #11 ENSGT00390000012240 #12 ENSGT00390000007029 #13 ENSGT00940000157019 #14 ENSGT00390000016851 #15 ENSGT00390000006166 #16 ENSGT00390000008152.B.a #17 ENSGT00390000007227.b #18 ENSGT00390000000719 #19 ENSGT00390000004097.a #20 ENSGT00390000012198 #21 ENSGT00410000025695.a.h #22 ENSGT00390000012913.a #23 ENSGT00940000160926 #24 ENSGT00940000158649 #25 ENSGT00390000017748 #26 ENSGT00940000160753 #27 ENSGT00390000014856 #28 ENSGT00940000165199 #29 ENSGT00940000160699 #30 ENSGT00390000000672.a.a #31 ENSGT00940000158163 #32 ENSGT00390000002913 #33 ENSGT00410000025695.b #34 ENSGT00940000167763 #35 ENSGT00940000158081 #36 ENSGT00730000111231 #37 Kakapo MODERN SPECIES 13 ENSSHBG00005015936 NR2F6 (ENSSHBG00005015943) #7 ENSSHBG00005015946 BABAM1 (ENSSHBG00005015951) #9 ANKLE1 (ENSSHBG00005015957) #10 ABHD8 (ENSSHBG00005015962) #11 MRPL34 (ENSSHBG00005015967) #12 ANO8 (ENSSHBG00005015977) #14 GTPBP3 (ENSSHBG00005015979) #15 ENSSHBG00005015986 #16 CILP2 (ENSSHBG00005015990) #17 YJEFN3 (ENSSHBG00005016001) #18 NDUFA13 (ENSSHBG00005016006) #19 GATAD2A (ENSSHBG00005016010) #20 MAU2 (ENSSHBG00005016045) #21 SUGP1 (ENSSHBG00005016077) #22 TM6SF2 (ENSSHBG00005016084) #23 HAPLN4 (ENSSHBG00005016090) #24 NCAN (ENSSHBG00005016099) #25 NR2C2AP (ENSSHBG00005016311) #26 RFXANK (ENSSHBG00005016324) #27 BORCS8 (ENSSHBG00005016340) #28 ENSSHBG00005016346 #29 MEF2B (ENSSHBG00005016361) #30 TMEM161A (ENSSHBG00005016377) #31 SLC25A42 (ENSSHBG00005016405) #32 ARMC6 (ENSSHBG00005016636) #33 SUGP2 (ENSSHBG00005016643) #34 ENSSHBG00005016648 #35 HOMER3 (ENSSHBG00005016668) #36 ENSSHBG00005016679 #36 Golden eagle MODERN SPECIES 3 NR2F6 (ENSACCG00020005019) #7 USHBP1 (ENSACCG00020005028) BABAM1 (ENSACCG00020005036) #9 ANKLE1 (ENSACCG00020005042) #10 ABHD8 (ENSACCG00020005049) #11 MRPL34 (ENSACCG00020005054) #12 DDA1 (ENSACCG00020005063) #13 ANO8 (ENSACCG00020005101) #14 GTPBP3 (ENSACCG00020005142) #15 ENSACCG00020005158 #16 CILP2 (ENSACCG00020005178) #17 YJEFN3 (ENSACCG00020005188) #18 NDUFA13 (ENSACCG00020005202) #19 GATAD2A (ENSACCG00020005214) #20 MAU2 (ENSACCG00020005272) #21 SUGP1 (ENSACCG00020005346) #22 TM6SF2 (ENSACCG00020005379) #23 HAPLN4 (ENSACCG00020005415) #24 NCAN (ENSACCG00020005458) #25 ENSACCG00020005528 NR2C2AP (ENSACCG00020005548) #26 RFXANK (ENSACCG00020005611) #27 BORCS8 (ENSACCG00020005634) #28 ENSACCG00020005651 #29 MEF2B (ENSACCG00020005665) #30 TMEM161A (ENSACCG00020005730) #31 SLC25A42 (ENSACCG00020005755) #32 ARMC6 (ENSACCG00020005768) #33 SUGP2 (ENSACCG00020005795) #34 HOMER3 (ENSACCG00020005833) #36 DDX49 (ENSACCG00020005865) #37