Testudinoidea	ANCESTRAL SPECIES	18	ENSGT00530000063974.a #7	ENSGT00390000016934 #8	ENSGT00510000049316 #9	ENSGT00390000007336 #10	ENSGT00390000012240 #11	ENSGT00390000007029 #12	ENSGT00940000157019 #13	ENSGT00390000016851 #14	ENSGT00390000006166 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00960000189525 #18	ENSGT00390000000719 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199 #29	ENSGT00940000160699 #30	ENSGT00390000000672.a.a #31	ENSGT00940000158163 #32	ENSGT00390000002913 #33	ENSGT00410000025695.b #34	ENSGT00940000167763 #35	ENSGT00940000158081 #36	ENSGT00730000111231 #37
Testudinidae	ANCESTRAL SPECIES	20	ENSGT00390000016934 #8	ENSGT00510000049316 #9	ENSGT00390000007336 #10	ENSGT00390000012240 #11	ENSGT00390000007029 #12	ENSGT00940000157019 #13	ENSGT00390000016851 #14	ENSGT00390000006166 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719.a #19	ENSGT00960000189525 #18	ENSGT00390000000719.b #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199 #29	ENSGT00940000160699 #30	ENSGT00390000000672.a.a #31	ENSGT00940000158163 #32	ENSGT00390000002913 #33	ENSGT00410000025695.b #34	ENSGT00940000167763 #35	ENSGT00940000158081 #36	ENSGT00730000111231 #37
Abingdon island giant tortoise	MODERN SPECIES		ENSCABG00000004188 #7	BABAM1 (ENSCABG00000004192) #8	ANKLE1 (ENSCABG00000004202) #9	ABHD8 (ENSCABG00000004206) #10	MRPL34 (ENSCABG00000004210) #11	DDA1 (ENSCABG00000004212) #12	ANO8 (ENSCABG00000004215) #13	GTPBP3 (ENSCABG00000004223) #14	ENSCABG00000004225 #15	CILP2 (ENSCABG00000004232) #16	YJEFN3 (ENSCABG00000004238) #17	ENSCABG00000004241 #18	ENSCABG00000004244 #19	GATAD2A (ENSCABG00000004245) #20	MAU2 (ENSCABG00000004254) #21	SUGP1 (ENSCABG00000004858) #22	TM6SF2 (ENSCABG00000004866) #23	HAPLN4 (ENSCABG00000004875) #24	NCAN (ENSCABG00000004882) #25	NR2C2AP (ENSCABG00000004889) #26	RFXANK (ENSCABG00000004891) #27	BORCS8 (ENSCABG00000004894) #28	ENSCABG00000004899 #29	MEF2B (ENSCABG00000004901) #30	TMEM161A (ENSCABG00000004904) #31	SLC25A42 (ENSCABG00000004955) #32	FLRT2 (ENSCABG00000004957)
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005006831	ENSGEVG00005006786	NR2F6 (ENSGEVG00005006760)	BABAM1 (ENSGEVG00005006735) #8	ANKLE1 (ENSGEVG00005006566) #9	ABHD8 (ENSGEVG00005006483) #10	MRPL34 (ENSGEVG00005006469) #11	DDA1 (ENSGEVG00005006430) #12	ANO8 (ENSGEVG00005006292) #13	GTPBP3 (ENSGEVG00005006249) #14	CILP2 (ENSGEVG00005006211) #16	YJEFN3 (ENSGEVG00005006180) #17	NDUFA13 (ENSGEVG00005006122) #19	GATAD2A (ENSGEVG00005006074) #20	MAU2 (ENSGEVG00005005539) #21	SUGP1 (ENSGEVG00005005333) #22	TM6SF2 (ENSGEVG00005005276) #23	HAPLN4 (ENSGEVG00005005235) #24	NCAN (ENSGEVG00005005147) #25	NR2C2AP (ENSGEVG00005005076) #26	RFXANK (ENSGEVG00005005039) #27	BORCS8 (ENSGEVG00005005013) #28	ENSGEVG00005004987 #29	MEF2B (ENSGEVG00005004959) #30	TMEM161A (ENSGEVG00005004899) #31	SLC25A42 (ENSGEVG00005004855) #32	ARMC6 (ENSGEVG00005004824) #33	SUGP2 (ENSGEVG00005004782) #34	ENSGEVG00005004681 #35	HOMER3 (ENSGEVG00005004624) #36	DDX49 (ENSGEVG00005004539) #37
Emydidae	ANCESTRAL SPECIES	14	ENSGT00940000165052	ENSGT00940000160748	ENSGT00390000016934 #8	ENSGT00510000049316 #9	ENSGT00390000007336 #10	ENSGT00390000012240 #11	ENSGT00390000007029 #12	ENSGT00940000157019 #13	ENSGT00390000016851 #14	ENSGT00390000006166 #15	ENSGT00390000008152.B.a #16	ENSGT00390000007227.b #17	ENSGT00390000000719 #19	ENSGT00390000004097.a #20	ENSGT00390000012198 #21	ENSGT00410000025695.a #22	ENSGT00390000012913.a #23	ENSGT00940000160926 #24	ENSGT00940000158649 #25	ENSGT00390000017748 #26	ENSGT00940000160753 #27	ENSGT00390000014856 #28	ENSGT00940000165199 #29	ENSGT00940000160699 #30	ENSGT00390000000672.a.a #31	ENSGT00940000158163 #32	ENSGT00390000002913 #33	ENSGT00410000025695.b #34	ENSGT00940000167763 #35	ENSGT00940000158081 #36	ENSGT00730000111231 #37
Three-toed box turtle	MODERN SPECIES	92	NR2F6 (ENSTMTG00000003288)	ENSTMTG00000003274	BABAM1 (ENSTMTG00000003264) #8	ANKLE1 (ENSTMTG00000003176) #9	ABHD8 (ENSTMTG00000003154) #10	MRPL34 (ENSTMTG00000003147) #11	DDA1 (ENSTMTG00000003127) #12	ANO8 (ENSTMTG00000003079) #13	GTPBP3 (ENSTMTG00000003053) #14	ENSTMTG00000003038 #15	CILP2 (ENSTMTG00000003015) #16	YJEFN3 (ENSTMTG00000013384) #17	NDUFA13 (ENSTMTG00000013371) #19	GATAD2A (ENSTMTG00000013318) #20	MAU2 (ENSTMTG00000013280) #21	SUGP1 (ENSTMTG00000013266) #22	TM6SF2 (ENSTMTG00000013253) #23	HAPLN4 (ENSTMTG00000013225) #24	NCAN (ENSTMTG00000013156) #25	NR2C2AP (ENSTMTG00000013134) #26	RFXANK (ENSTMTG00000013105) #27	BORCS8 (ENSTMTG00000013093) #28	ENSTMTG00000013028 #29	MEF2B (ENSTMTG00000013005) #30	TMEM161A (ENSTMTG00000012984) #31	SLC25A42 (ENSTMTG00000012962) #32	ARMC6 (ENSTMTG00000012947) #33	SUGP2 (ENSTMTG00000012920) #34	ENSTMTG00000012889 #35	HOMER3 (ENSTMTG00000012853) #36	DDX49 (ENSTMTG00000012790) #37
painted turtle	MODERN SPECIES	771	ENSCPBG00000012401	ENSCPBG00000012402	NR2F6 (ENSCPBG00000012404)	BABAM1 (ENSCPBG00000012410) #8	ANKLE1 (ENSCPBG00000012416) #9	ABHD8 (ENSCPBG00000012422) #10	MRPL34 (ENSCPBG00000012424) #11	DDA1 (ENSCPBG00000012426) #12	ANO8 (ENSCPBG00000012431) #13	GTPBP3 (ENSCPBG00000012434) #14	ENSCPBG00000012437 #15	CILP2 (ENSCPBG00000012445) #16	YJEFN3 (ENSCPBG00000012447) #17	GATAD2A (ENSCPBG00000012450) #20	MAU2 (ENSCPBG00000012453) #21	SUGP1 (ENSCPBG00000012455) #22	TM6SF2 (ENSCPBG00000012458) #23	HAPLN4 (ENSCPBG00000012460) #24	NCAN (ENSCPBG00000012461) #25	NR2C2AP (ENSCPBG00000012463) #26	RFXANK (ENSCPBG00000012464) #27	BORCS8 (ENSCPBG00000012467) #28	ENSCPBG00000012469 #29	MEF2B (ENSCPBG00000012471) #30	TMEM161A (ENSCPBG00000012479) #31	SLC25A42 (ENSCPBG00000012483) #32	ARMC6 (ENSCPBG00000012485) #33	SUGP2 (ENSCPBG00000012487) #34	ENSCPBG00000012490 #35	HOMER3 (ENSCPBG00000012496) #36	DDX49 (ENSCPBG00000012500) #37