Otophysi	ANCESTRAL SPECIES	89	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT01100000263525.a.b.a.b.b.b ##8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT00390000013965	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.a	ENSGT00530000064085.d	ENSGT00530000063301.a.a.d	ENSGT00390000008812.b.b.b	ENSGT00940000157746.f	ENSGT00940000175118	ENSGT00950000183044.a.a.a.a.b	ENSGT00940000163471.a	ENSGT00390000004214	ENSGT00940000164514.b	ENSGT00940000156895	ENSGT00390000008825.b.b	ENSGT00940000161294	ENSGT00390000012918.c	ENSGT00940000154883.e.b
Characiphysae	ANCESTRAL SPECIES	192	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT01030000235061.d #14	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00940000166194 #19	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22
Characiphysae_b	ANCESTRAL SPECIES	152	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT01030000235061.d #14	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00940000166194 #19	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00950000182983.A.a.a.a	ENSGT01030000234586.B.a.a.b
Electric eel	MODERN SPECIES	131										ENSEEEG00000020991	ENSEEEG00000020992 #17	nmrk1 (ENSEEEG00000020994) #18	zgc:163143 (ENSEEEG00000020996) #19	ENSEEEG00000020998 #20	dlx4a (ENSEEEG00000021001) #21	dusp3b (ENSEEEG00000021007) #22	DNAAF5 (ENSEEEG00000021009)	prkar1b (ENSEEEG00000021011)	pdgfab (ENSEEEG00000021013)	ccdc137 (ENSEEEG00000021015)	BTBD17 (ENSEEEG00000021016)	KCNJ2 (ENSEEEG00000021017)	zp3f.2 (ENSEEEG00000021020)	cyp2k19 (ENSEEEG00000021031)	ABCA3 (ENSEEEG00000021089)	ccnf (ENSEEEG00000021364)	CFAP70 (ENSEEEG00000021373)	HMOX2 (ENSEEEG00000021395)	dnaja3a (ENSEEEG00000021414)	coro7 (ENSEEEG00000021531)	vasnb (ENSEEEG00000021532)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT01090000259993.B.c.c.a.b	ENSGT01020000230358.h.d.b.a.b	ENSGT00940000155904	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.b.b ##8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT00390000013965.a	ENSGT00940000159384 #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b	ENSGT00530000064085.d	ENSGT00530000063301.a.a.d	ENSGT00390000008812.b.b.b	ENSGT00940000157746.f	ENSGT00940000155223.a.a	ENSGT00390000003628.a.b	ENSGT00940000155217.p.a	ENSGT01050000244893.c.a.a.a	ENSGT00940000159365.b.a.b.a	ENSGT00940000158180	ENSGT00390000002127.a	ENSGT00510000048339	ENSGT00390000015360	ENSGT00530000064157.b
Cyprininae	ANCESTRAL SPECIES	22	ENSGT01100000263659.a	ENSGT00940000156518.B.c.a	ENSGT00390000014585.d	ENSGT00440000038032.e	ENSGT01100000263525.a.b.a.b.b.b.a ##8	ENSGT00940000160377.i #9	ENSGT00390000010157.b.a #10	ENSGT00390000018541.b #11	ENSGT00940000159428.e.b.b #12	ENSGT00730000111057.c.a #13	ENSGT00940000157598.j #15	ENSGT00940000157195.m.a #16	ENSGT01060000249533.d #17	ENSGT00940000159384.f #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b.a	ENSGT00530000064085.d.g	ENSGT00530000063301.a.a.d.b	ENSGT00390000008812.b.b.b.g.b	ENSGT00940000157746.f.a	ENSGT00940000155223.a.a.a	ENSGT00390000003628.a.b.b	ENSGT00940000155217.p.a.b	ENSGT01050000244893.c.a.a.a.b	ENSGT00940000159365.b.a.b.a	ENSGT00390000008812.b.b.b.g.a	ENSGT00940000157746.f.b	ENSGT00940000155223.a.a.b	ENSGT00390000003628.a.b.a	ENSGT00940000155217.p.a.a
Cyprininae_a	ANCESTRAL SPECIES	137					ENSGT01100000263525.a.b.a.b.b.b.a ##8	ENSGT00940000160377.i #9	ENSGT00390000010157.b.a #10	ENSGT00390000018541.b #11	ENSGT00940000159428.e.b.b #12	ENSGT00730000111057.c.a #13	ENSGT00940000157598.j #15	ENSGT00940000157195.m.a #16	ENSGT01060000249533.d #17	ENSGT00940000159384.f #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b.a	ENSGT00530000064085.d.g	ENSGT00530000063301.a.a.d.b	ENSGT00390000008812.b.b.b.g.b	ENSGT00940000157746.f.a	ENSGT00940000155223.a.a.a	ENSGT00390000003628.a.b.b	ENSGT00940000155217.p.a.b	ENSGT01050000244893.c.a.a.a.b	ENSGT00940000159365.b.a.b.a	ENSGT00940000158180.n	ENSGT00390000002127.a.a	ENSGT00510000048339.a	ENSGT00390000015360.e	ENSGT00530000064157.b.g
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	126	ENSSGRG00000054037	ENSSGRG00000054036	ENSSGRG00000054035	clpp (ENSSGRG00000054034) #7	ENSSGRG00000054032	si:dkey-204f11.64 (ENSSGRG00000054031) ##8	carm1 (ENSSGRG00000054020) #9	yipf2 (ENSSGRG00000054019) #10	slc25a23b (ENSSGRG00000053949) #12	znf207a (ENSSGRG00000053944) #13	TNRC6C (ENSSGRG00000053940) #15	septin9a (ENSSGRG00000053926) #16	zgc:163143 (ENSSGRG00000053919) #19	ENSSGRG00000053917	dlx4a (ENSSGRG00000053915) #21	dusp3b (ENSSGRG00000053914) #22	thraa (ENSSGRG00000053772)	nsfa (ENSSGRG00000053678)	psmd11a (ENSSGRG00000053659)	ENSSGRG00000053654	CA10 (ENSSGRG00000053653)	smarce1 (ENSSGRG00000053642)	prkcbb (ENSSGRG00000053079)	CACNG3 (ENSSGRG00000053060)	TNRC6A (ENSSGRG00000053054)	rpusd1 (ENSSGRG00000053053)	dctn5 (ENSSGRG00000053052)	gng13b (ENSSGRG00000053051)	traf7 (ENSSGRG00000052768)	ENSSGRG00000052749	ENSSGRG00000052747
Golden-line barbel	MODERN SPECIES	301	ENSSGRG00000032550	aldh3b1 (ENSSGRG00000032551)	clpp (ENSSGRG00000032553) #7	carm1 (ENSSGRG00000032558) #9	yipf2 (ENSSGRG00000032563) #10	timm29 (ENSSGRG00000032609) #11	slc25a23b (ENSSGRG00000032624) #12	znf207a (ENSSGRG00000032715) #13	TNRC6C (ENSSGRG00000032716) #15	septin9a (ENSSGRG00000032718) #16	si:ch211-165d12.4 (ENSSGRG00000032755)	nmrk1 (ENSSGRG00000032756) #18	zgc:163143 (ENSSGRG00000032757) #19	ENSSGRG00000032758	ENSSGRG00000032759 #21	dusp3b (ENSSGRG00000032760) #22	thraa (ENSSGRG00000032762)	nsfa (ENSSGRG00000032903)	psmd11a (ENSSGRG00000032990)	cdk5r1a (ENSSGRG00000033350)	ENSSGRG00000033352	CA10 (ENSSGRG00000033357)	smarce1 (ENSSGRG00000033363)	prkcbb (ENSSGRG00000033433)	ENSSGRG00000033669	rbbp6 (ENSSGRG00000033671)	TNRC6A (ENSSGRG00000033672)	ndufab1b (ENSSGRG00000033706)	rpusd1 (ENSSGRG00000033707)	gng13b (ENSSGRG00000033709)	traf7 (ENSSGRG00000033720)
Common carp reference	MODERN SPECIES	3	ENSCCRG00000080706	ENSCCRG00000062579	ENSCCRG00000053974	si:dkey-204f11.64 (ENSCCRG00000066916) ##8	clpp (ENSCCRG00000077072) #7	carm1 (ENSCCRG00000029475) #9	yipf2 (ENSCCRG00000052734) #10	timm29 (ENSCCRG00000052735) #11	slc25a23b (ENSCCRG00000074490) #12	ENSCCRG00000057995 #15	znf207a (ENSCCRG00000055654) #13	septin9a (ENSCCRG00000046560) #16	ENSCCRG00000068187 #17	nmrk1 (ENSCCRG00000054757) #18	dlx4a (ENSCCRG00000020191) #21	dusp3b (ENSCCRG00000020194) #22	thraa (ENSCCRG00000046962)	nsfa (ENSCCRG00000045657)	cdk5r1a (ENSCCRG00000063015)	psmd11a (ENSCCRG00000011048)	ENSCCRG00000052737	ENSCCRG00000052739	smarce1 (ENSCCRG00000080951)	prkcbb (ENSCCRG00000076757)	ENSCCRG00000071979	rbbp6 (ENSCCRG00000066900)	TNRC6A (ENSCCRG00000000489)	ndufab1b (ENSCCRG00000075159)	rpusd1 (ENSCCRG00000062828)	dctn5 (ENSCCRG00000000406)	gng13b (ENSCCRG00000056562)
Goldfish	MODERN SPECIES	22	ENSCARG00000010263	ENSCARG00000010260	clpp (ENSCARG00000010245) #7	si:dkey-204f11.64 (ENSCARG00000010235) ##8	carm1 (ENSCARG00000008834) #9	yipf2 (ENSCARG00000008755) #10	timm29 (ENSCARG00000008750) #11	slc25a23b (ENSCARG00000008744) #12	znf207a (ENSCARG00000008736) #13	TNRC6C (ENSCARG00000008530) #15	septin9a (ENSCARG00000008267) #16	si:ch211-165d12.4 (ENSCARG00000008213)	nmrk1 (ENSCARG00000008207) #18	ENSCARG00000008197	dlx4a (ENSCARG00000008193) #21	dusp3b (ENSCARG00000008187) #22	thraa (ENSCARG00000007129)	nsfa (ENSCARG00000006182)	psmd11a (ENSCARG00000006016)	cdk5r1a (ENSCARG00000005995)	ENSCARG00000005951	CA10 (ENSCARG00000005907)	smarce1 (ENSCARG00000005867)	prkcbb (ENSCARG00000005071)	CACNG3 (ENSCARG00000004995)	ENSCARG00000004990	rbbp6 (ENSCARG00000004940)	TNRC6A (ENSCARG00000004542)	ndufab1b (ENSCARG00000004471)	rpusd1 (ENSCARG00000004457)	dctn5 (ENSCARG00000004445)
Zebrafish	MODERN SPECIES	18	clpp (ENSDARG00000020679) #7	si:dkey-204f11.64 (ENSDARG00000094695) ##8	carm1 (ENSDARG00000018698) #9	yipf2 (ENSDARG00000021399) #10	timm29 (ENSDARG00000037909) #11	slc25a23b (ENSDARG00000024708) #12	znf207a (ENSDARG00000015538) #13	TNRC6C (ENSDARG00000076847) #15	septin9a (ENSDARG00000020235) #16	si:ch211-165d12.4 (ENSDARG00000079353)	nmrk1 (ENSDARG00000037913) #18	zgc:163143 (ENSDARG00000076437) #19	tac4 (ENSDARG00000096234)	znfl1 (ENSDARG00000037914)	dlx4a (ENSDARG00000011956) #21	dusp3b (ENSDARG00000060130) #22	thraa (ENSDARG00000000151)	nsfa (ENSDARG00000007654)	psmd11a (ENSDARG00000060150)	cdk5r1a (ENSDARG00000037916)	ENSDARG00000037917	CA10 (ENSDARG00000009568)	smarce1 (ENSDARG00000016871)	prkcbb (ENSDARG00000022254)	CACNG3 (ENSDARG00000076401)	rbbp6 (ENSDARG00000037919)	TNRC6A (ENSDARG00000079688)	ndufab1b (ENSDARG00000014915)	rpusd1 (ENSDARG00000060192)	dctn5 (ENSDARG00000003573)	gng13b (ENSDARG00000037921)