Otomorpha	ANCESTRAL SPECIES	1	ENSGT00950000182832.A	ENSGT00940000161032	ENSGT00940000157457	ENSGT00940000165637	ENSGT00390000017856.b	ENSGT00950000183098.a.b	ENSGT00390000016335.h	ENSGT00940000166248.a	ENSGT00940000161341.a.a	ENSGT00940000162682.B.a ##22	ENSGT00390000014900.b.b.b	ENSGT00940000154018.a	ENSGT00940000158142	ENSGT00940000155510	ENSGT00940000157917.a.b	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.a	ENSGT00950000183178.b.b.b	ENSGT00940000157854	ENSGT00530000064085.c	ENSGT00530000063301.a.a.c.a	ENSGT00390000008812.b.b.a	ENSGT00940000157411	ENSGT00940000156038.a.b.b	ENSGT01030000234646.B.a.a.a.a.a	ENSGT00940000153704.B.c	ENSGT00940000166447	ENSGT00940000157439.b	ENSGT00390000000603	ENSGT00390000011219	ENSGT00940000154534.b.b
Otophysi	ANCESTRAL SPECIES	89	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT01100000263525.a.b.a.b.b.b ##8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT00390000013965	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.a	ENSGT00530000064085.d	ENSGT00530000063301.a.a.d	ENSGT00390000008812.b.b.b	ENSGT00940000157746.f	ENSGT00940000175118	ENSGT00950000183044.a.a.a.a.b	ENSGT00940000163471.a	ENSGT00390000004214	ENSGT00940000164514.b	ENSGT00940000156895	ENSGT00390000008825.b.b	ENSGT00940000161294	ENSGT00390000012918.c	ENSGT00940000154883.e.b
Characiphysae	ANCESTRAL SPECIES	192	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT01030000235061.d #14	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00940000166194 #19	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22
Characiphysae_b	ANCESTRAL SPECIES	152	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.a #8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT01030000235061.d #14	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT01060000249533 #17	ENSGT00940000159384 #18	ENSGT00940000166194 #19	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000162682.B.b #22	ENSGT00390000005666	ENSGT00940000157513	ENSGT00940000159039.a	ENSGT00390000004169	ENSGT00950000182961.a.a.d	ENSGT00950000182983.A.a.a.a	ENSGT01030000234586.B.a.a.b
Electric eel	MODERN SPECIES	131										ENSEEEG00000020991	ENSEEEG00000020992 #17	nmrk1 (ENSEEEG00000020994) #18	zgc:163143 (ENSEEEG00000020996) #19	ENSEEEG00000020998 #20	dlx4a (ENSEEEG00000021001) #21	dusp3b (ENSEEEG00000021007) #22	DNAAF5 (ENSEEEG00000021009)	prkar1b (ENSEEEG00000021011)	pdgfab (ENSEEEG00000021013)	ccdc137 (ENSEEEG00000021015)	BTBD17 (ENSEEEG00000021016)	KCNJ2 (ENSEEEG00000021017)	zp3f.2 (ENSEEEG00000021020)	cyp2k19 (ENSEEEG00000021031)	ABCA3 (ENSEEEG00000021089)	ccnf (ENSEEEG00000021364)	CFAP70 (ENSEEEG00000021373)	HMOX2 (ENSEEEG00000021395)	dnaja3a (ENSEEEG00000021414)	coro7 (ENSEEEG00000021531)	vasnb (ENSEEEG00000021532)
Cyprinoidei	ANCESTRAL SPECIES	1	ENSGT01090000259993.B.c.c.a.b	ENSGT01020000230358.h.d.b.a.b	ENSGT00940000155904	ENSGT00390000005830 #7	ENSGT01100000263525.a.b.a.b.b.b ##8	ENSGT00940000160377 #9	ENSGT00390000010157.b #10	ENSGT00390000018541 #11	ENSGT00940000159428.e.b #12	ENSGT00730000111057.c #13	ENSGT00940000157598 #15	ENSGT00940000157195.m #16	ENSGT00390000013965.a	ENSGT00940000159384 #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b	ENSGT00530000064085.d	ENSGT00530000063301.a.a.d	ENSGT00390000008812.b.b.b	ENSGT00940000157746.f	ENSGT00940000155223.a.a	ENSGT00390000003628.a.b	ENSGT00940000155217.p.a	ENSGT01050000244893.c.a.a.a	ENSGT00940000159365.b.a.b.a	ENSGT00940000158180	ENSGT00390000002127.a	ENSGT00510000048339	ENSGT00390000015360	ENSGT00530000064157.b
Cyprininae	ANCESTRAL SPECIES	22	ENSGT01100000263659.a	ENSGT00940000156518.B.c.a	ENSGT00390000014585.d	ENSGT00440000038032.e	ENSGT01100000263525.a.b.a.b.b.b.a ##8	ENSGT00940000160377.i #9	ENSGT00390000010157.b.a #10	ENSGT00390000018541.b #11	ENSGT00940000159428.e.b.b #12	ENSGT00730000111057.c.a #13	ENSGT00940000157598.j #15	ENSGT00940000157195.m.a #16	ENSGT01060000249533.d #17	ENSGT00940000159384.f #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b.a	ENSGT00530000064085.d.g	ENSGT00530000063301.a.a.d.b	ENSGT00390000008812.b.b.b.g.b	ENSGT00940000157746.f.a	ENSGT00940000155223.a.a.a	ENSGT00390000003628.a.b.b	ENSGT00940000155217.p.a.b	ENSGT01050000244893.c.a.a.a.b	ENSGT00940000159365.b.a.b.a	ENSGT00390000008812.b.b.b.g.a	ENSGT00940000157746.f.b	ENSGT00940000155223.a.a.b	ENSGT00390000003628.a.b.a	ENSGT00940000155217.p.a.a
Cyprininae_a	ANCESTRAL SPECIES	137					ENSGT01100000263525.a.b.a.b.b.b.a ##8	ENSGT00940000160377.i #9	ENSGT00390000010157.b.a #10	ENSGT00390000018541.b #11	ENSGT00940000159428.e.b.b #12	ENSGT00730000111057.c.a #13	ENSGT00940000157598.j #15	ENSGT00940000157195.m.a #16	ENSGT01060000249533.d #17	ENSGT00940000159384.f #18	ENSGT00940000165079.b.f #21	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.b.a	ENSGT00530000064085.d.g	ENSGT00530000063301.a.a.d.b	ENSGT00390000008812.b.b.b.g.b	ENSGT00940000157746.f.a	ENSGT00940000155223.a.a.a	ENSGT00390000003628.a.b.b	ENSGT00940000155217.p.a.b	ENSGT01050000244893.c.a.a.a.b	ENSGT00940000159365.b.a.b.a	ENSGT00940000158180.n	ENSGT00390000002127.a.a	ENSGT00510000048339.a	ENSGT00390000015360.e	ENSGT00530000064157.b.g
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	126	ENSSGRG00000054037	ENSSGRG00000054036	ENSSGRG00000054035	clpp (ENSSGRG00000054034) #7	ENSSGRG00000054032	si:dkey-204f11.64 (ENSSGRG00000054031) ##8	carm1 (ENSSGRG00000054020) #9	yipf2 (ENSSGRG00000054019) #10	slc25a23b (ENSSGRG00000053949) #12	znf207a (ENSSGRG00000053944) #13	TNRC6C (ENSSGRG00000053940) #15	septin9a (ENSSGRG00000053926) #16	zgc:163143 (ENSSGRG00000053919) #19	ENSSGRG00000053917	dlx4a (ENSSGRG00000053915) #21	dusp3b (ENSSGRG00000053914) #22	thraa (ENSSGRG00000053772)	nsfa (ENSSGRG00000053678)	psmd11a (ENSSGRG00000053659)	ENSSGRG00000053654	CA10 (ENSSGRG00000053653)	smarce1 (ENSSGRG00000053642)	prkcbb (ENSSGRG00000053079)	CACNG3 (ENSSGRG00000053060)	TNRC6A (ENSSGRG00000053054)	rpusd1 (ENSSGRG00000053053)	dctn5 (ENSSGRG00000053052)	gng13b (ENSSGRG00000053051)	traf7 (ENSSGRG00000052768)	ENSSGRG00000052749	ENSSGRG00000052747
Golden-line barbel	MODERN SPECIES	301	ENSSGRG00000032550	aldh3b1 (ENSSGRG00000032551)	clpp (ENSSGRG00000032553) #7	carm1 (ENSSGRG00000032558) #9	yipf2 (ENSSGRG00000032563) #10	timm29 (ENSSGRG00000032609) #11	slc25a23b (ENSSGRG00000032624) #12	znf207a (ENSSGRG00000032715) #13	TNRC6C (ENSSGRG00000032716) #15	septin9a (ENSSGRG00000032718) #16	si:ch211-165d12.4 (ENSSGRG00000032755)	nmrk1 (ENSSGRG00000032756) #18	zgc:163143 (ENSSGRG00000032757) #19	ENSSGRG00000032758	ENSSGRG00000032759 #21	dusp3b (ENSSGRG00000032760) #22	thraa (ENSSGRG00000032762)	nsfa (ENSSGRG00000032903)	psmd11a (ENSSGRG00000032990)	cdk5r1a (ENSSGRG00000033350)	ENSSGRG00000033352	CA10 (ENSSGRG00000033357)	smarce1 (ENSSGRG00000033363)	prkcbb (ENSSGRG00000033433)	ENSSGRG00000033669	rbbp6 (ENSSGRG00000033671)	TNRC6A (ENSSGRG00000033672)	ndufab1b (ENSSGRG00000033706)	rpusd1 (ENSSGRG00000033707)	gng13b (ENSSGRG00000033709)	traf7 (ENSSGRG00000033720)
Common carp reference	MODERN SPECIES	3	ENSCCRG00000080706	ENSCCRG00000062579	ENSCCRG00000053974	si:dkey-204f11.64 (ENSCCRG00000066916) ##8	clpp (ENSCCRG00000077072) #7	carm1 (ENSCCRG00000029475) #9	yipf2 (ENSCCRG00000052734) #10	timm29 (ENSCCRG00000052735) #11	slc25a23b (ENSCCRG00000074490) #12	ENSCCRG00000057995 #15	znf207a (ENSCCRG00000055654) #13	septin9a (ENSCCRG00000046560) #16	ENSCCRG00000068187 #17	nmrk1 (ENSCCRG00000054757) #18	dlx4a (ENSCCRG00000020191) #21	dusp3b (ENSCCRG00000020194) #22	thraa (ENSCCRG00000046962)	nsfa (ENSCCRG00000045657)	cdk5r1a (ENSCCRG00000063015)	psmd11a (ENSCCRG00000011048)	ENSCCRG00000052737	ENSCCRG00000052739	smarce1 (ENSCCRG00000080951)	prkcbb (ENSCCRG00000076757)	ENSCCRG00000071979	rbbp6 (ENSCCRG00000066900)	TNRC6A (ENSCCRG00000000489)	ndufab1b (ENSCCRG00000075159)	rpusd1 (ENSCCRG00000062828)	dctn5 (ENSCCRG00000000406)	gng13b (ENSCCRG00000056562)
Goldfish	MODERN SPECIES	22	ENSCARG00000010263	ENSCARG00000010260	clpp (ENSCARG00000010245) #7	si:dkey-204f11.64 (ENSCARG00000010235) ##8	carm1 (ENSCARG00000008834) #9	yipf2 (ENSCARG00000008755) #10	timm29 (ENSCARG00000008750) #11	slc25a23b (ENSCARG00000008744) #12	znf207a (ENSCARG00000008736) #13	TNRC6C (ENSCARG00000008530) #15	septin9a (ENSCARG00000008267) #16	si:ch211-165d12.4 (ENSCARG00000008213)	nmrk1 (ENSCARG00000008207) #18	ENSCARG00000008197	dlx4a (ENSCARG00000008193) #21	dusp3b (ENSCARG00000008187) #22	thraa (ENSCARG00000007129)	nsfa (ENSCARG00000006182)	psmd11a (ENSCARG00000006016)	cdk5r1a (ENSCARG00000005995)	ENSCARG00000005951	CA10 (ENSCARG00000005907)	smarce1 (ENSCARG00000005867)	prkcbb (ENSCARG00000005071)	CACNG3 (ENSCARG00000004995)	ENSCARG00000004990	rbbp6 (ENSCARG00000004940)	TNRC6A (ENSCARG00000004542)	ndufab1b (ENSCARG00000004471)	rpusd1 (ENSCARG00000004457)	dctn5 (ENSCARG00000004445)
Zebrafish	MODERN SPECIES	18	clpp (ENSDARG00000020679) #7	si:dkey-204f11.64 (ENSDARG00000094695) ##8	carm1 (ENSDARG00000018698) #9	yipf2 (ENSDARG00000021399) #10	timm29 (ENSDARG00000037909) #11	slc25a23b (ENSDARG00000024708) #12	znf207a (ENSDARG00000015538) #13	TNRC6C (ENSDARG00000076847) #15	septin9a (ENSDARG00000020235) #16	si:ch211-165d12.4 (ENSDARG00000079353)	nmrk1 (ENSDARG00000037913) #18	zgc:163143 (ENSDARG00000076437) #19	tac4 (ENSDARG00000096234)	znfl1 (ENSDARG00000037914)	dlx4a (ENSDARG00000011956) #21	dusp3b (ENSDARG00000060130) #22	thraa (ENSDARG00000000151)	nsfa (ENSDARG00000007654)	psmd11a (ENSDARG00000060150)	cdk5r1a (ENSDARG00000037916)	ENSDARG00000037917	CA10 (ENSDARG00000009568)	smarce1 (ENSDARG00000016871)	prkcbb (ENSDARG00000022254)	CACNG3 (ENSDARG00000076401)	rbbp6 (ENSDARG00000037919)	TNRC6A (ENSDARG00000079688)	ndufab1b (ENSDARG00000014915)	rpusd1 (ENSDARG00000060192)	dctn5 (ENSDARG00000003573)	gng13b (ENSDARG00000037921)
Clupeiformes	ANCESTRAL SPECIES	213					ENSGT00940000154507.t	ENSGT00940000161341.a.b	ENSGT00940000166248.b	ENSGT00390000016335.g	ENSGT00950000183098.a.a.a	ENSGT00950000183207.b	ENSGT00950000183150.a.a.a.d	ENSGT00940000157744.c	ENSGT00650000094974.a #20	ENSGT00940000165079.b #21	ENSGT00940000158951.f	ENSGT00940000162682.B.b #22	ENSGT00940000157917.a.a	ENSGT00530000064085.d	ENSGT00530000063301.a.a.d	ENSGT00390000008812.b.b.b	ENSGT00940000157746.f	ENSGT00940000155223.a.a	ENSGT00390000004690.a.a	ENSGT00940000166711	ENSGT00390000003628.a.b	ENSGT00390000004038	ENSGT00530000063991.a	ENSGT00940000154811.A	ENSGT00940000163871.b	ENSGT00940000155348.B.c	ENSGT00940000160643.i
Denticle herring	MODERN SPECIES	17	ENSDCDG00000027333 #19	rusf1 (ENSDCDG00000027337)	ENSDCDG00000027357	cd2bp2 (ENSDCDG00000027360)	ENSDCDG00000027361	ARL4D (ENSDCDG00000027363)	ENSDCDG00000027364	NBR1 (ENSDCDG00000027365)	PSME3 (ENSDCDG00000027368)	aoc2 (ENSDCDG00000027370)	G6PC1 (ENSDCDG00000027372)	KAT7 (ENSDCDG00000014057)	ENSDCDG00000015082 #20	dlx4a (ENSDCDG00000015090) #21	ENSDCDG00000015093	dusp3b (ENSDCDG00000015097) #22	THRA (ENSDCDG00000015154)	nsfa (ENSDCDG00000015372)	psmd11a (ENSDCDG00000017299)	cdk5r1a (ENSDCDG00000018178)	ENSDCDG00000018183	CA10 (ENSDCDG00000018204)	rpl23 (ENSDCDG00000018328)	ENSDCDG00000018333	smarce1 (ENSDCDG00000018337)	ccdc103 (ENSDCDG00000018343)	FAM187A (ENSDCDG00000018347)	abi3a (ENSDCDG00000018353)	ENSDCDG00000018360	mpp2a (ENSDCDG00000018379)	ENSDCDG00000018462
Atlantic herring	MODERN SPECIES		scpep1 (ENSCHAG00000009274)	coil (ENSCHAG00000009249)	rab11fip4a (ENSCHAG00000008893)	RTN4R (ENSCHAG00000008872)	ENSCHAG00000008861	ARL4D (ENSCHAG00000008844)	ENSCHAG00000008827	ENSCHAG00000008794	PSME3 (ENSCHAG00000008598)	aoc2 (ENSCHAG00000008581)	G6PC1 (ENSCHAG00000008572)	KAT7 (ENSCHAG00000006721)	ENSCHAG00000006630 #20	dlx4a (ENSCHAG00000006600) #21	DLX3 (ENSCHAG00000006520)	dusp3b (ENSCHAG00000006511) #22	ENSCHAG00000006498	ENSCHAG00000006487	rarab (ENSCHAG00000006222)	ENSCHAG00000006209	pyya (ENSCHAG00000006180)	mpp2a (ENSCHAG00000004293)	ENSCHAG00000004183	abi3a (ENSCHAG00000004138)	FAM187A (ENSCHAG00000004112)	ccdc103 (ENSCHAG00000004096)	kif2c (ENSCHAG00000003855)	smarce1 (ENSCHAG00000003698)	ENSCHAG00000003686	rpl23 (ENSCHAG00000003462)	CA10 (ENSCHAG00000003410)