Glires	ANCESTRAL SPECIES	3	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00990000209473	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00990000209473	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Kangaroo rat	MODERN SPECIES	326	Gngt2 (ENSDORG00000023588) #7	Igf2bp1 (ENSDORG00000014371) #8	Snf8 (ENSDORG00000009262) #9	Ube2z (ENSDORG00000009258) #10	ENSDORG00000008511 #11	ENSDORG00000028385 #12	ENSDORG00000024585 #13	Hoxb13 (ENSDORG00000008369) #14	Hoxb9 (ENSDORG00000027423) #15	Hoxb8 (ENSDORG00000007906) #16	Hoxb7 (ENSDORG00000007905) #17	Hoxb6 (ENSDORG00000023877) #18	Hoxb5 (ENSDORG00000007900) #19	Hoxb4 (ENSDORG00000007899) #20	Hoxb3 (ENSDORG00000007898) #21	Hoxb2 (ENSDORG00000007897) #22	Hoxb1 (ENSDORG00000007896) #23	Snx11 (ENSDORG00000029078) #24	Cbx1 (ENSDORG00000026399) #25	Nfe2l1 (ENSDORG00000000715) #26	Copz2 (ENSDORG00000013441) #27	Prr15l (ENSDORG00000027427) #28	Pnpo (ENSDORG00000014110) #29	Sp2 (ENSDORG00000014109) #30	Sp6 (ENSDORG00000026201) #31	Scrn2 (ENSDORG00000002361) #32	Osbpl7 (ENSDORG00000002354) #33	Tbx21 (ENSDORG00000013302) #34	Npepps (ENSDORG00000009627) #35	Socs7 (ENSDORG00000028979) #36	ENSDORG00000007713 #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Muroidea	ANCESTRAL SPECIES		ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Cricetidae	ANCESTRAL SPECIES		ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.a.a ##25	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.ab	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Northern American deer mouse	MODERN SPECIES	21	Gngt2 (ENSPEMG00000027491) #7	B4galnt2 (ENSPEMG00000020717)	Igf2bp1 (ENSPEMG00000021974) #8	Gip (ENSPEMG00000021184)	Snf8 (ENSPEMG00000022229) #9	Ube2z (ENSPEMG00000020953) #10	Atp5g1 (ENSPEMG00000020590)	ENSPEMG00000028729 #13	ENSPEMG00000025676 #13	Ttll6 (ENSPEMG00000021918)	Hoxb13 (ENSPEMG00000021511) #14	Hoxb9 (ENSPEMG00000027158) #15	Hoxb5 (ENSPEMG00000030101) #19	Hoxb4 (ENSPEMG00000029805) #20	Hoxb3 (ENSPEMG00000028692) #21	Hoxb2 (ENSPEMG00000029510) #22	Hoxb1 (ENSPEMG00000023977) #23	Skap1 (ENSPEMG00000000585)	ENSPEMG00000020286	Snx11 (ENSPEMG00000000381) #24	Cbx1 (ENSPEMG00000020976) ##25	Nfe2l1 (ENSPEMG00000010512) #26	Copz2 (ENSPEMG00000011137) #27	Cdk5rap3 (ENSPEMG00000020712)	ENSPEMG00000030963	Prr15l (ENSPEMG00000024436) #28	Pnpo (ENSPEMG00000025094) #29	Sp2 (ENSPEMG00000017112) #30	Sp6 (ENSPEMG00000001231) #31	Scrn2 (ENSPEMG00000020381) #32	Lrrc46 (ENSPEMG00000020507)
Prairie vole	MODERN SPECIES	114		ENSMOCG00000004266	ENSMOCG00000021226	Snf8 (ENSMOCG00000016684) #9	Ube2z (ENSMOCG00000018241) #10	ENSMOCG00000013163	Ttll6 (ENSMOCG00000021089)	Hoxb13 (ENSMOCG00000021389) #14	Hoxb9 (ENSMOCG00000020312) #15	Hoxb8 (ENSMOCG00000018435) #16	Hoxb7 (ENSMOCG00000020820) #17	Hoxb6 (ENSMOCG00000020355) #18	Hoxb5 (ENSMOCG00000014523) #19	Hoxb4 (ENSMOCG00000022964) #20	Hoxb3 (ENSMOCG00000020739) #21	Hoxb2 (ENSMOCG00000014846) #22	Hoxb1 (ENSMOCG00000002452) #23	Skap1 (ENSMOCG00000018431)	Snx11 (ENSMOCG00000019303) #24	Cbx1 (ENSMOCG00000001520) #25	Nfe2l1 (ENSMOCG00000016002) #26	Copz2 (ENSMOCG00000022427) #27	Cdk5rap3 (ENSMOCG00000019534)	Prr15l (ENSMOCG00000006695) #28	Pnpo (ENSMOCG00000011655) #29	Sp2 (ENSMOCG00000020935) #30	Sp6 (ENSMOCG00000007065) #31	Scrn2 (ENSMOCG00000019511) #32	Lrrc46 (ENSMOCG00000016707)	Mrpl10 (ENSMOCG00000019451)	Osbpl7 (ENSMOCG00000021054) #33
Cricetinae	ANCESTRAL SPECIES		ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720.`b.a.a	ENSGT00940000159720.`b.b	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.a.b ##25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Golden Hamster	MODERN SPECIES	674	Gngt2 (ENSMAUG00000019144) #7	B4galnt2 (ENSMAUG00000007916)	Gip (ENSMAUG00000009238)	Snf8 (ENSMAUG00000001857) #9	Ube2z (ENSMAUG00000007792) #10	ENSMAUG00000021751	Ttll6 (ENSMAUG00000020973)	Hoxb13 (ENSMAUG00000008407) #14	Hoxb9 (ENSMAUG00000017720) #15	Hoxb8 (ENSMAUG00000012636) #16	Hoxb7 (ENSMAUG00000021297) #17	Hoxb6 (ENSMAUG00000021423) #18	Hoxb5 (ENSMAUG00000021419) #19	Hoxb4 (ENSMAUG00000009367) #20	Hoxb3 (ENSMAUG00000011251) #21	Hoxb2 (ENSMAUG00000021979) #22	Hoxb1 (ENSMAUG00000013237) #23	Skap1 (ENSMAUG00000022191)	Snx11 (ENSMAUG00000021528) #24	ENSMAUG00000003463 ##25	Nfe2l1 (ENSMAUG00000020456) #26	Copz2 (ENSMAUG00000010560) #27	Cdk5rap3 (ENSMAUG00000007991)	Pnpo (ENSMAUG00000021706) #29	Sp2 (ENSMAUG00000019269) #30	Sp6 (ENSMAUG00000009667) #31	Scrn2 (ENSMAUG00000010014) #32	Lrrc46 (ENSMAUG00000019416)	Mrpl10 (ENSMAUG00000000820)	Osbpl7 (ENSMAUG00000013876) #33	Tbx21 (ENSMAUG00000017507) #34
Chinese hamster chok1gshd	MODERN SPECIES	33	Gip (ENSCGRG00001021533)	Snf8 (ENSCGRG00001000737) #9	Ube2z (ENSCGRG00001019150) #10	ENSCGRG00001022606	ENSCGRG00001010560	ENSCGRG00001011435 #13	Ttll6 (ENSCGRG00001018398)	Hoxb13 (ENSCGRG00001015060) #14	Hoxb9 (ENSCGRG00001015314) #15	Hoxb8 (ENSCGRG00001020235) #16	Hoxb7 (ENSCGRG00001021590) #17	Hoxb6 (ENSCGRG00001015674) #18	Hoxb5 (ENSCGRG00001016167) #19	Hoxb4 (ENSCGRG00001022431) #20	Hoxb3 (ENSCGRG00001016667) #21	Hoxb2 (ENSCGRG00001017587) #22	Hoxb1 (ENSCGRG00001024619) #23	ENSCGRG00001023355	ENSCGRG00001020759	Snx11 (ENSCGRG00001022221) #24	Cbx1 (ENSCGRG00001014799) ##25	Nfe2l1 (ENSCGRG00001015287) #26	Copz2 (ENSCGRG00001014767) #27	Cdk5rap3 (ENSCGRG00001006966)	Prr15l (ENSCGRG00001008926) #28	Pnpo (ENSCGRG00001018189) #29	Sp2 (ENSCGRG00001010976) #30	Sp6 (ENSCGRG00001002797) #31	Scrn2 (ENSCGRG00001022143) #32	Lrrc46 (ENSCGRG00001019758)	Mrpl10 (ENSCGRG00001024199)
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Mus	ANCESTRAL SPECIES	2	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603
Mouse	MODERN SPECIES	2	Igf2bp1 (ENSMUSG00000013415) #8	Gip (ENSMUSG00000014351)	Snf8 (ENSMUSG00000006058) #9	Ube2z (ENSMUSG00000014349) #10	Atp5g1 (ENSMUSG00000006057)	Calcoco2 (ENSMUSG00000006056) #13	Ttll6 (ENSMUSG00000038756)	Hoxb13 (ENSMUSG00000049604) #14	Hoxb9 (ENSMUSG00000020875) #15	Hoxb8 (ENSMUSG00000056648) #16	Hoxb7 (ENSMUSG00000038721) #17	Hoxb6 (ENSMUSG00000000690) #18	Hoxb5 (ENSMUSG00000038700) #19	Hoxb4 (ENSMUSG00000038692) #20	Hoxb3 (ENSMUSG00000048763) #21	Hoxb2 (ENSMUSG00000075588) #22	Hoxb1 (ENSMUSG00000018973) #23	Skap1 (ENSMUSG00000057058)	Snx11 (ENSMUSG00000020876) #24	Cbx1 (ENSMUSG00000018666) #25	Nfe2l1 (ENSMUSG00000038615) #26	Copz2 (ENSMUSG00000018672) #27	Cdk5rap3 (ENSMUSG00000018669)	Prr15l (ENSMUSG00000047040) #28	Pnpo (ENSMUSG00000018659) #29	Sp2 (ENSMUSG00000018678) #30	Sp6 (ENSMUSG00000038560) #31	Scrn2 (ENSMUSG00000020877) #32	Lrrc46 (ENSMUSG00000020878)	Mrpl10 (ENSMUSG00000001445)	Osbpl7 (ENSMUSG00000038534) #33
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00940000153593.c.b.k	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603
Steppe mouse	MODERN SPECIES	3291	Gip (ENSMSIG00000019162)	Snf8 (ENSMSIG00000019072) #9	Ube2z (ENSMSIG00000019038) #10	Atp5g1 (ENSMSIG00000018986)	ENSMSIG00000018956 #13	Ttll6 (ENSMSIG00000018881)	Hoxb13 (ENSMSIG00000018865) #14	Hoxb9 (ENSMSIG00000018823) #15	Hoxb8 (ENSMSIG00000018807) #16	Hoxb7 (ENSMSIG00000018805) #17	Hoxb6 (ENSMSIG00000018795) #18	Hoxb5 (ENSMSIG00000018787) #19	Hoxb4 (ENSMSIG00000018777) #20	ENSMSIG00000018776	Hoxb3 (ENSMSIG00000018771) #21	Hoxb2 (ENSMSIG00000018769) #22	Hoxb1 (ENSMSIG00000018752) #23	Skap1 (ENSMSIG00000018601)	Snx11 (ENSMSIG00000018546) #24	ENSMSIG00000018520	Cbx1 (ENSMSIG00000018447) #25	Nfe2l1 (ENSMSIG00000018374) #26	Copz2 (ENSMSIG00000018337) #27	Cdk5rap3 (ENSMSIG00000018309)	ENSMSIG00000018270 #28	ENSMSIG00000018267 #29	Sp2 (ENSMSIG00000018237) #30	Sp6 (ENSMSIG00000018223) #31	Scrn2 (ENSMSIG00000018202) #32	Lrrc46 (ENSMSIG00000018171)	Mrpl10 (ENSMSIG00000018160)
spretus	MODERN SPECIES	2	Igf2bp1 (MGP_SPRETEiJ_G0017862) #8	Gip (MGP_SPRETEiJ_G0017863)	Snf8 (MGP_SPRETEiJ_G0017864) #9	Ube2z (MGP_SPRETEiJ_G0017865) #10	Atp5g1 (MGP_SPRETEiJ_G0017866)	MGP_SPRETEiJ_G0017867 #13	Ttll6 (MGP_SPRETEiJ_G0017868)	Hoxb13 (MGP_SPRETEiJ_G0017869) #14	Hoxb9 (MGP_SPRETEiJ_G0017870) #15	Hoxb8 (MGP_SPRETEiJ_G0017871) #16	Hoxb7 (MGP_SPRETEiJ_G0017872) #17	Hoxb6 (MGP_SPRETEiJ_G0017873) #18	Hoxb5 (MGP_SPRETEiJ_G0017874) #19	Hoxb4 (MGP_SPRETEiJ_G0017875) #20	Hoxb3 (MGP_SPRETEiJ_G0017876) #21	Hoxb2 (MGP_SPRETEiJ_G0017877) #22	Hoxb1 (MGP_SPRETEiJ_G0017878) #23	MGP_SPRETEiJ_G0017879	Snx11 (MGP_SPRETEiJ_G0017880) #24	Cbx1 (MGP_SPRETEiJ_G0017881) #25	MGP_SPRETEiJ_G0017882	Nfe2l1 (MGP_SPRETEiJ_G0017883) #26	Copz2 (MGP_SPRETEiJ_G0017884) #27	Cdk5rap3 (MGP_SPRETEiJ_G0017885)	Prr15l (MGP_SPRETEiJ_G0017886) #28	Pnpo (MGP_SPRETEiJ_G0017887) #29	Sp2 (MGP_SPRETEiJ_G0017888) #30	Sp6 (MGP_SPRETEiJ_G0017889) #31	Scrn2 (MGP_SPRETEiJ_G0017890) #32	Lrrc46 (MGP_SPRETEiJ_G0017891)	Mrpl10 (MGP_SPRETEiJ_G0017892)
Ryukyu mouse	MODERN SPECIES	2	Igf2bp1 (MGP_CAROLIEiJ_G0017016) #8	Gip (MGP_CAROLIEiJ_G0017017)	Snf8 (MGP_CAROLIEiJ_G0017018) #9	MGP_CAROLIEiJ_G0017019 #10	MGP_CAROLIEiJ_G0017020	MGP_CAROLIEiJ_G0017021 #13	Ttll6 (MGP_CAROLIEiJ_G0017022)	Hoxb13 (MGP_CAROLIEiJ_G0017023) #14	Hoxb9 (MGP_CAROLIEiJ_G0017024) #15	Hoxb8 (MGP_CAROLIEiJ_G0017025) #16	Hoxb7 (MGP_CAROLIEiJ_G0017026) #17	Hoxb6 (MGP_CAROLIEiJ_G0017027) #18	Hoxb5 (MGP_CAROLIEiJ_G0017028) #19	Hoxb4 (MGP_CAROLIEiJ_G0017029) #20	Hoxb3 (MGP_CAROLIEiJ_G0017030) #21	Hoxb2 (MGP_CAROLIEiJ_G0017031) #22	Hoxb1 (MGP_CAROLIEiJ_G0017032) #23	Skap1 (MGP_CAROLIEiJ_G0017033)	Snx11 (MGP_CAROLIEiJ_G0017034) #24	Cbx1 (MGP_CAROLIEiJ_G0017035) #25	MGP_CAROLIEiJ_G0017036	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #26	Copz2 (MGP_CAROLIEiJ_G0017038) #27	Cdk5rap3 (MGP_CAROLIEiJ_G0017039)	Prr15l (MGP_CAROLIEiJ_G0017040) #28	Pnpo (MGP_CAROLIEiJ_G0017041) #29	Sp2 (MGP_CAROLIEiJ_G0017042) #30	Sp6 (MGP_CAROLIEiJ_G0017043) #31	MGP_CAROLIEiJ_G0017044 #32	Lrrc46 (MGP_CAROLIEiJ_G0017045)	Mrpl10 (MGP_CAROLIEiJ_G0017046)
Shrew mouse	MODERN SPECIES	5	MGP_PahariEiJ_G0018146 #8	Gip (MGP_PahariEiJ_G0018147)	Snf8 (MGP_PahariEiJ_G0018148) #9	Ube2z (MGP_PahariEiJ_G0018149) #10	Atp5g1 (MGP_PahariEiJ_G0018150)	MGP_PahariEiJ_G0018151 #13	Ttll6 (MGP_PahariEiJ_G0018152)	Hoxb13 (MGP_PahariEiJ_G0018153) #14	Hoxb9 (MGP_PahariEiJ_G0018154) #15	Hoxb8 (MGP_PahariEiJ_G0018155) #16	Hoxb7 (MGP_PahariEiJ_G0018156) #17	Hoxb6 (MGP_PahariEiJ_G0018157) #18	Hoxb5 (MGP_PahariEiJ_G0018158) #19	Hoxb4 (MGP_PahariEiJ_G0018159) #20	Hoxb3 (MGP_PahariEiJ_G0018160) #21	Hoxb2 (MGP_PahariEiJ_G0018161) #22	Hoxb1 (MGP_PahariEiJ_G0018162) #23	Skap1 (MGP_PahariEiJ_G0018163)	Snx11 (MGP_PahariEiJ_G0018164) #24	Cbx1 (MGP_PahariEiJ_G0018165) #25	MGP_PahariEiJ_G0018166	Nfe2l1 (MGP_PahariEiJ_G0018167) #26	Copz2 (MGP_PahariEiJ_G0018168) #27	Cdk5rap3 (MGP_PahariEiJ_G0018169)	Prr15l (MGP_PahariEiJ_G0018170) #28	Pnpo (MGP_PahariEiJ_G0018171) #29	Sp2 (MGP_PahariEiJ_G0018172) #30	Sp6 (MGP_PahariEiJ_G0018173) #31	Scrn2 (MGP_PahariEiJ_G0018174) #32	Lrrc46 (MGP_PahariEiJ_G0018175)	Mrpl10 (MGP_PahariEiJ_G0018176)
Rat	MODERN SPECIES	1	B4galnt2 (ENSRNOG00000067203)	Igf2bp1 (ENSRNOG00000006122) #8	Gip (ENSRNOG00000006306)	Snf8 (ENSRNOG00000006500) #9	Ube2z (ENSRNOG00000006868) #10	ENSRNOG00000066153 #13	Ttll6 (ENSRNOG00000004939)	Hoxb13 (ENSRNOG00000007491) #14	Hoxb9 (ENSRNOG00000007573) #15	Hoxb8 (ENSRNOG00000007585) #16	Hoxb7 (ENSRNOG00000007611) #17	Hoxb6 (ENSRNOG00000007823) #18	Hoxb5 (ENSRNOG00000008010) #19	Hoxb4 (ENSRNOG00000008191) #20	Hoxb3 (ENSRNOG00000008313) #21	Hoxb2 (ENSRNOG00000008365) #22	Hoxb1 (ENSRNOG00000008506) #23	Skap1 (ENSRNOG00000023881)	Snx11 (ENSRNOG00000008642) #24	Cbx1 (ENSRNOG00000008689) #25	Nfe2l1 (ENSRNOG00000008830) #26	Copz2 (ENSRNOG00000009225) #27	Cdk5rap3 (ENSRNOG00000048747)	Prr15l (ENSRNOG00000049162) #28	Pnpo (ENSRNOG00000046493) #29	Sp2 (ENSRNOG00000010492) #30	Sp6 (ENSRNOG00000023551) #31	Scrn2 (ENSRNOG00000010214) #32	Lrrc46 (ENSRNOG00000009902)	Mrpl10 (ENSRNOG00000009567)	Osbpl7 (ENSRNOG00000009473) #33
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Igf2bp1 (ENSNGAG00000015679) #8	Gip (ENSNGAG00000020354)	Snf8 (ENSNGAG00000001366) #9	Ube2z (ENSNGAG00000024296) #10	ENSNGAG00000024212	ENSNGAG00000023585 #13	Ttll6 (ENSNGAG00000011763)	Hoxb13 (ENSNGAG00000011053) #14	Hoxb9 (ENSNGAG00000010851) #15	Hoxb8 (ENSNGAG00000010647) #16	Hoxb7 (ENSNGAG00000010205) #17	Hoxb6 (ENSNGAG00000000973) #18	Hoxb5 (ENSNGAG00000023238) #19	Hoxb4 (ENSNGAG00000021768) #20	Hoxb3 (ENSNGAG00000020227) #21	Hoxb2 (ENSNGAG00000019089) #22	Hoxb1 (ENSNGAG00000018593) #23	Skap1 (ENSNGAG00000012571)	Snx11 (ENSNGAG00000010446) #24	Cbx1 (ENSNGAG00000006760) #25	Nfe2l1 (ENSNGAG00000000736) #26	Copz2 (ENSNGAG00000023713) #27	ENSNGAG00000000747	ENSNGAG00000022529	Prr15l (ENSNGAG00000021432) #28	Pnpo (ENSNGAG00000020016) #29	Sp2 (ENSNGAG00000017612) #30	Sp6 (ENSNGAG00000015868) #31	Scrn2 (ENSNGAG00000023806) #32	Lrrc46 (ENSNGAG00000022557)	Mrpl10 (ENSNGAG00000022195)
Lesser Egyptian jerboa	MODERN SPECIES	56	B4galnt2 (ENSJJAG00000006322)	Igf2bp1 (ENSJJAG00000002687) #8	Gip (ENSJJAG00000010688)	Snf8 (ENSJJAG00000006012) #9	ENSJJAG00000003530 #10	ENSJJAG00000010301	Ttll6 (ENSJJAG00000010253)	Hoxb13 (ENSJJAG00000010401) #14	Hoxb9 (ENSJJAG00000009821) #15	Hoxb8 (ENSJJAG00000002398) #16	Hoxb7 (ENSJJAG00000001284) #17	Hoxb6 (ENSJJAG00000000997) #18	Hoxb5 (ENSJJAG00000000763) #19	Hoxb4 (ENSJJAG00000002642) #20	Hoxb3 (ENSJJAG00000007804) #21	Hoxb2 (ENSJJAG00000009465) #22	Hoxb1 (ENSJJAG00000001073) #23	Skap1 (ENSJJAG00000003458)	ENSJJAG00000005754 #24	ENSJJAG00000007753 ##25	Nfe2l1 (ENSJJAG00000006432) #26	Copz2 (ENSJJAG00000001025) #27	ENSJJAG00000002511	Prr15l (ENSJJAG00000006478) #28	Pnpo (ENSJJAG00000023608) #29	Sp2 (ENSJJAG00000003061) #30	Sp6 (ENSJJAG00000006452) #31	Scrn2 (ENSJJAG00000023635) #32	Lrrc46 (ENSJJAG00000010412)	Mrpl10 (ENSJJAG00000004046)	Osbpl7 (ENSJJAG00000004477) #33
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00990000209473	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000010703	SNF8 (ENSHGLG00000011519) #9	UBE2Z (ENSHGLG00000016280) #10	ATP5MC1 (ENSHGLG00000035460) #11	CALCOCO2 (ENSHGLG00000012114) #13	TTLL6 (ENSHGLG00000019187)	HOXB13 (ENSHGLG00000014634) #14	ENSHGLG00000048296	HOXB9 (ENSHGLG00000014731) #15	HOXB8 (ENSHGLG00000038380) #16	HOXB7 (ENSHGLG00000045318) #17	HOXB6 (ENSHGLG00000012400) #18	HOXB5 (ENSHGLG00000039265) #19	HOXB4 (ENSHGLG00000034075) #20	HOXB3 (ENSHGLG00000010686) #21	HOXB2 (ENSHGLG00000010090) #22	HOXB1 (ENSHGLG00000009781) #23	SKAP1 (ENSHGLG00000014563)	SNX11 (ENSHGLG00000016837) #24	CBX1 (ENSHGLG00000013574) #25	NFE2L1 (ENSHGLG00000012592) #26	COPZ2 (ENSHGLG00000018543) #27	CDK5RAP3 (ENSHGLG00000019464)	PRR15L (ENSHGLG00000014696) #28	PNPO (ENSHGLG00000013159) #29	SP2 (ENSHGLG00000009902) #30	SP6 (ENSHGLG00000021113) #31	SCRN2 (ENSHGLG00000041375) #32	LRRC46 (ENSHGLG00000035931)	MRPL10 (ENSHGLG00000048399)	OSBPL7 (ENSHGLG00000012525) #33
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Guinea pig	MODERN SPECIES	53	GNGT2 (ENSCPOG00000030054) #7	B4GALNT2 (ENSCPOG00000006191)	IGF2BP1 (ENSCPOG00000020174) #8	GIP (ENSCPOG00000023966)	SNF8 (ENSCPOG00000020610) #9	UBE2Z (ENSCPOG00000024416) #10	ENSCPOG00000009017 #11	CALCOCO2 (ENSCPOG00000021273) #13	TTLL6 (ENSCPOG00000012509)	HOXB13 (ENSCPOG00000013509) #14	HOXB9 (ENSCPOG00000037597) #15	HOXB6 (ENSCPOG00000040707) #18	HOXB5 (ENSCPOG00000030746) #19	ENSCPOG00000010105	ENSCPOG00000010107 #21	HOXB2 (ENSCPOG00000035468) #22	HOXB1 (ENSCPOG00000022183) #23	SKAP1 (ENSCPOG00000022118)	SNX11 (ENSCPOG00000020234) #24	CBX1 (ENSCPOG00000034435) #25	NFE2L1 (ENSCPOG00000030805) #26	COPZ2 (ENSCPOG00000019500) #27	CDK5RAP3 (ENSCPOG00000007275)	PRR15L (ENSCPOG00000035567) #28	PNPO (ENSCPOG00000003187) #29	SP2 (ENSCPOG00000014943) #30	SP6 (ENSCPOG00000007638) #31	SCRN2 (ENSCPOG00000006929) #32	LRRC46 (ENSCPOG00000006925)	MRPL10 (ENSCPOG00000037104)	OSBPL7 (ENSCPOG00000006914) #33
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Long-tailed chinchilla	MODERN SPECIES	158	B4GALNT2 (ENSCLAG00000016224)	IGF2BP1 (ENSCLAG00000015853) #8	ENSCLAG00000014301	SNF8 (ENSCLAG00000013387) #9	UBE2Z (ENSCLAG00000016068) #10	ATP5MC1 (ENSCLAG00000015723) #11	CALCOCO2 (ENSCLAG00000015881) #13	TTLL6 (ENSCLAG00000013529)	HOXB13 (ENSCLAG00000014855) #14	ENSCLAG00000015198 #15	HOXB7 (ENSCLAG00000014906) #17	HOXB6 (ENSCLAG00000015524) #18	HOXB5 (ENSCLAG00000014374) #19	HOXB4 (ENSCLAG00000014725) #20	HOXB3 (ENSCLAG00000015322) #21	HOXB2 (ENSCLAG00000015271) #22	HOXB1 (ENSCLAG00000013047) #23	SKAP1 (ENSCLAG00000015423)	SNX11 (ENSCLAG00000015837) #24	CBX1 (ENSCLAG00000013587) #25	NFE2L1 (ENSCLAG00000014836) #26	COPZ2 (ENSCLAG00000013544) #27	CDK5RAP3 (ENSCLAG00000012292)	PRR15L (ENSCLAG00000017903) #28	PNPO (ENSCLAG00000013871) #29	SP2 (ENSCLAG00000014115) #30	SP6 (ENSCLAG00000016276) #31	LRRC46 (ENSCLAG00000016713)	SCRN2 (ENSCLAG00000013965) #32	MRPL10 (ENSCLAG00000015400)	OSBPL7 (ENSCLAG00000014839) #33
Degu	MODERN SPECIES	97	B4GALNT2 (ENSODEG00000018456)	ENSODEG00000016991 #8	ENSODEG00000017109	GIP (ENSODEG00000017003)	ENSODEG00000017032 #9	UBE2Z (ENSODEG00000017306) #10	ATP5MC1 (ENSODEG00000017366) #11	TTLL6 (ENSODEG00000017145)	HOXB13 (ENSODEG00000017199) #14	HOXB9 (ENSODEG00000017293) #15	HOXB8 (ENSODEG00000017119) #16	HOXB6 (ENSODEG00000016988) #18	HOXB5 (ENSODEG00000017253) #19	HOXB4 (ENSODEG00000017038) #20	HOXB3 (ENSODEG00000017116) #21	HOXB2 (ENSODEG00000017153) #22	HOXB1 (ENSODEG00000017050) #23	SKAP1 (ENSODEG00000017533)	SNX11 (ENSODEG00000017458) #24	CBX1 (ENSODEG00000017272) #25	NFE2L1 (ENSODEG00000017348) #26	ENSODEG00000020421	COPZ2 (ENSODEG00000017565) #27	ENSODEG00000017229	PNPO (ENSODEG00000017424) #29	SP2 (ENSODEG00000017126) #30	SP6 (ENSODEG00000017625) #31	SCRN2 (ENSODEG00000017395) #32	LRRC46 (ENSODEG00000017367)	MRPL10 (ENSODEG00000017536)	OSBPL7 (ENSODEG00000017364) #33
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00990000209473	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00940000159720	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161230 #17	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000162072 #20	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Squirrel	MODERN SPECIES	90	GIP (ENSSTOG00000004043)	SNF8 (ENSSTOG00000004023) #9	UBE2Z (ENSSTOG00000000796) #10	ATP5MC1 (ENSSTOG00000013404) #11	ENSSTOG00000013395 #13	TTLL6 (ENSSTOG00000006016)	ENSSTOG00000025444	HOXB13 (ENSSTOG00000014942) #14	HOXB9 (ENSSTOG00000009741) #15	HOXB8 (ENSSTOG00000028337) #16	HOXB7 (ENSSTOG00000025657) #17	HOXB6 (ENSSTOG00000020303) #18	HOXB5 (ENSSTOG00000009740) #19	HOXB4 (ENSSTOG00000009734) #20	HOXB3 (ENSSTOG00000025093) #21	HOXB2 (ENSSTOG00000023586) #22	HOXB1 (ENSSTOG00000028630) #23	SKAP1 (ENSSTOG00000013692)	SNX11 (ENSSTOG00000013684) #24	CBX1 (ENSSTOG00000023986) #25	NFE2L1 (ENSSTOG00000013664) #26	ENSSTOG00000027550 #27	CDK5RAP3 (ENSSTOG00000006244)	PRR15L (ENSSTOG00000006235) #28	PNPO (ENSSTOG00000006221) #29	SP2 (ENSSTOG00000015926) #30	SP6 (ENSSTOG00000001607) #31	SCRN2 (ENSSTOG00000027108) #32	LRRC46 (ENSSTOG00000002068)	MRPL10 (ENSSTOG00000024617)	OSBPL7 (ENSSTOG00000001636) #33
Arctic ground squirrel	MODERN SPECIES	46	IGF2BP1 (ENSUPAG00010006100) #8	GIP (ENSUPAG00010006136)	SNF8 (ENSUPAG00010006148) #9	UBE2Z (ENSUPAG00010006178) #10	ENSUPAG00010006195	CALCOCO2 (ENSUPAG00010006243) #13	TTLL6 (ENSUPAG00010006267)	HOXB13 (ENSUPAG00010006301) #14	HOXB9 (ENSUPAG00010006305) #15	HOXB8 (ENSUPAG00010006310) #16	HOXB7 (ENSUPAG00010006312) #17	HOXB6 (ENSUPAG00010006317) #18	HOXB5 (ENSUPAG00010006320) #19	HOXB4 (ENSUPAG00010006325) #20	HOXB3 (ENSUPAG00010006328) #21	HOXB2 (ENSUPAG00010006336) #22	HOXB1 (ENSUPAG00010006340) #23	SKAP1 (ENSUPAG00010006345)	SNX11 (ENSUPAG00010006370) #24	CBX1 (ENSUPAG00010006381) #25	NFE2L1 (ENSUPAG00010006396) #26	COPZ2 (ENSUPAG00010006455) #27	CDK5RAP3 (ENSUPAG00010006466)	PRR15L (ENSUPAG00010006473) #28	PNPO (ENSUPAG00010006483) #29	SP2 (ENSUPAG00010006507) #30	SP6 (ENSUPAG00010006522) #31	SCRN2 (ENSUPAG00010006526) #32	LRRC46 (ENSUPAG00010006533)	MRPL10 (ENSUPAG00010006539)	OSBPL7 (ENSUPAG00010006545) #33
Eurasian red squirrel	MODERN SPECIES	12	GIP (ENSSVLG00005020522)	SNF8 (ENSSVLG00005020472) #9	ENSSVLG00005020450	UBE2Z (ENSSVLG00005020428) #10	ATP5MC1 (ENSSVLG00005020344) #11	CALCOCO2 (ENSSVLG00005020296) #13	TTLL6 (ENSSVLG00005020005)	HOXB13 (ENSSVLG00005019820) #14	HOXB9 (ENSSVLG00005019725) #15	HOXB8 (ENSSVLG00005019675) #16	HOXB7 (ENSSVLG00005019618) #17	HOXB6 (ENSSVLG00005019586) #18	HOXB5 (ENSSVLG00005019546) #19	HOXB4 (ENSSVLG00005019455) #20	HOXB3 (ENSSVLG00005019421) #21	HOXB2 (ENSSVLG00005019378) #22	HOXB1 (ENSSVLG00005019304) #23	SKAP1 (ENSSVLG00005019232)	SNX11 (ENSSVLG00005019122) #24	CBX1 (ENSSVLG00005019034) #25	NFE2L1 (ENSSVLG00005018798) #26	COPZ2 (ENSSVLG00005018641) #27	CDK5RAP3 (ENSSVLG00005018459)	PRR15L (ENSSVLG00005018399) #28	PNPO (ENSSVLG00005018295) #29	ENSSVLG00005018218 #30	SP6 (ENSSVLG00005018194) #31	SCRN2 (ENSSVLG00005018077) #32	LRRC46 (ENSSVLG00005018036)	MRPL10 (ENSSVLG00005017985)	OSBPL7 (ENSSVLG00005017757) #33
Lagomorpha	ANCESTRAL SPECIES		ENSGT01100000263525.b.a #7	ENSGT00390000006679.b	ENSGT00940000160427 #8	ENSGT00390000005121	ENSGT00390000007843 #9	ENSGT00940000159091 #10	ENSGT00940000154298.a.b #11	ENSGT00950000183025.a #13	ENSGT00940000161434	ENSGT00940000159029 #14	ENSGT00940000161386 #15	ENSGT00940000161529 #16	ENSGT00940000161108 #18	ENSGT00940000158354 #19	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b	ENSGT00940000160113 #24	ENSGT00940000154152.d.b.dc #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00390000004405.b #27	ENSGT00390000000713	ENSGT00940000154534.a #28	ENSGT00390000011219 #29	ENSGT00940000159590 #30	ENSGT00940000161498 #31	ENSGT00390000013474.b.a #32	ENSGT00940000161315	ENSGT00390000000603	ENSGT00940000157439 #33
Rabbit	MODERN SPECIES	10	B4GALNT2 (ENSOCUG00000003531)	IGF2BP1 (ENSOCUG00000004411) #8	GIP (ENSOCUG00000004410)	SNF8 (ENSOCUG00000009156) #9	UBE2Z (ENSOCUG00000009159) #10	ATP5MC1 (ENSOCUG00000016225) #11	CALCOCO2 (ENSOCUG00000016209) #13	ENSOCUG00000038154	TTLL6 (ENSOCUG00000006289)	HOXB13 (ENSOCUG00000012816) #14	HOXB9 (ENSOCUG00000027316) #15	HOXB8 (ENSOCUG00000029186) #16	HOXB5 (ENSOCUG00000023093) #19	HOXB6 (ENSOCUG00000011560) #18	HOXB3 (ENSOCUG00000023337) #21	HOXB2 (ENSOCUG00000024951) #22	HOXB1 (ENSOCUG00000001720) #23	SKAP1 (ENSOCUG00000001717)	SNX11 (ENSOCUG00000002309) #24	CBX1 (ENSOCUG00000008021) #25	NFE2L1 (ENSOCUG00000022298) #26	COPZ2 (ENSOCUG00000001802) #27	CDK5RAP3 (ENSOCUG00000012325)	PRR15L (ENSOCUG00000017489) #28	PNPO (ENSOCUG00000017484) #29	SP2 (ENSOCUG00000027415) #30	SP6 (ENSOCUG00000023482) #31	SCRN2 (ENSOCUG00000009457) #32	LRRC46 (ENSOCUG00000009453)	MRPL10 (ENSOCUG00000009452)	OSBPL7 (ENSOCUG00000009447) #33
Pika	MODERN SPECIES	3527												ENSOPRG00000000402	HOXB6 (ENSOPRG00000000399) #18	HOXB5 (ENSOPRG00000000394) #19	HOXB3 (ENSOPRG00000000392) #21	HOXB2 (ENSOPRG00000000389) #22