Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720 #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #14	ENSGT00940000161529 #15	ENSGT00940000161230 #16	ENSGT00940000161108 #17	ENSGT00940000158354 #18	ENSGT00940000162072 #19	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b #24	ENSGT00940000160113 #25	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k #26	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498 #34	ENSGT00390000013474.b.a #35	ENSGT00940000161315 #36	ENSGT00390000000603 #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720 #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #14	ENSGT00940000161529 #15	ENSGT00940000161230 #16	ENSGT00940000161108 #17	ENSGT00940000158354 #18	ENSGT00940000162072 #19	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b #24	ENSGT00940000160113 #25	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k #26	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498 #34	ENSGT00390000013474.b.a #35	ENSGT00940000161315 #36	ENSGT00390000000603 #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000160427	ENSGT00390000005121 #7	ENSGT00390000007843 #8	ENSGT00940000159091 #9	ENSGT00940000159720 #10	ENSGT00950000183025.a #11	ENSGT00940000161434 #12	ENSGT00940000159029 #13	ENSGT00940000161386 #14	ENSGT00940000161529 #15	ENSGT00940000161230 #16	ENSGT00940000161108 #17	ENSGT00940000158354 #18	ENSGT00940000162072 #19	ENSGT00940000159774 #21	ENSGT00940000155029.c.b #22	ENSGT00940000159503 #23	ENSGT00390000017856.b #24	ENSGT00940000160113 #25	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000153593.c.b.k #26	ENSGT00950000182892.a.b.a.a #28	ENSGT00390000004405.b #29	ENSGT00390000000713 #30	ENSGT00940000154534.a #31	ENSGT00390000011219 #32	ENSGT00940000159590 #33	ENSGT00940000161498 #34	ENSGT00390000013474.b.a #35	ENSGT00940000161315 #36	ENSGT00390000000603 #37
Steppe mouse	MODERN SPECIES	3291	Gip (ENSMSIG00000019162) #7	Snf8 (ENSMSIG00000019072) #8	Ube2z (ENSMSIG00000019038) #9	Atp5g1 (ENSMSIG00000018986) #10	ENSMSIG00000018956 #11	Ttll6 (ENSMSIG00000018881) #12	Hoxb13 (ENSMSIG00000018865) #13	Hoxb9 (ENSMSIG00000018823) #14	Hoxb8 (ENSMSIG00000018807) #15	Hoxb7 (ENSMSIG00000018805) #16	Hoxb6 (ENSMSIG00000018795) #17	Hoxb5 (ENSMSIG00000018787) #18	Hoxb4 (ENSMSIG00000018777) #19	ENSMSIG00000018776 #20	Hoxb3 (ENSMSIG00000018771) #21	Hoxb2 (ENSMSIG00000018769) #22	Hoxb1 (ENSMSIG00000018752) #23	Skap1 (ENSMSIG00000018601) #24	Snx11 (ENSMSIG00000018546) #25	ENSMSIG00000018520 #26	Cbx1 (ENSMSIG00000018447) #27	Nfe2l1 (ENSMSIG00000018374) #28	Copz2 (ENSMSIG00000018337) #29	Cdk5rap3 (ENSMSIG00000018309) #30	ENSMSIG00000018270 #31	ENSMSIG00000018267 #32	Sp2 (ENSMSIG00000018237) #33	Sp6 (ENSMSIG00000018223) #34	Scrn2 (ENSMSIG00000018202) #35	Lrrc46 (ENSMSIG00000018171) #36	Mrpl10 (ENSMSIG00000018160) #37
spretus	MODERN SPECIES	2	Igf2bp1 (MGP_SPRETEiJ_G0017862)	Gip (MGP_SPRETEiJ_G0017863) #7	Snf8 (MGP_SPRETEiJ_G0017864) #8	Ube2z (MGP_SPRETEiJ_G0017865) #9	Atp5g1 (MGP_SPRETEiJ_G0017866) #10	MGP_SPRETEiJ_G0017867 #11	Ttll6 (MGP_SPRETEiJ_G0017868) #12	Hoxb13 (MGP_SPRETEiJ_G0017869) #13	Hoxb9 (MGP_SPRETEiJ_G0017870) #14	Hoxb8 (MGP_SPRETEiJ_G0017871) #15	Hoxb7 (MGP_SPRETEiJ_G0017872) #16	Hoxb6 (MGP_SPRETEiJ_G0017873) #17	Hoxb5 (MGP_SPRETEiJ_G0017874) #18	Hoxb4 (MGP_SPRETEiJ_G0017875) #19	Hoxb3 (MGP_SPRETEiJ_G0017876) #21	Hoxb2 (MGP_SPRETEiJ_G0017877) #22	Hoxb1 (MGP_SPRETEiJ_G0017878) #23	MGP_SPRETEiJ_G0017879 #24	Snx11 (MGP_SPRETEiJ_G0017880) #25	Cbx1 (MGP_SPRETEiJ_G0017881) #27	MGP_SPRETEiJ_G0017882 #26	Nfe2l1 (MGP_SPRETEiJ_G0017883) #28	Copz2 (MGP_SPRETEiJ_G0017884) #29	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #30	Prr15l (MGP_SPRETEiJ_G0017886) #31	Pnpo (MGP_SPRETEiJ_G0017887) #32	Sp2 (MGP_SPRETEiJ_G0017888) #33	Sp6 (MGP_SPRETEiJ_G0017889) #34	Scrn2 (MGP_SPRETEiJ_G0017890) #35	Lrrc46 (MGP_SPRETEiJ_G0017891) #36	Mrpl10 (MGP_SPRETEiJ_G0017892) #37
Mouse	MODERN SPECIES	2	Igf2bp1 (ENSMUSG00000013415)	Gip (ENSMUSG00000014351) #7	Snf8 (ENSMUSG00000006058) #8	Ube2z (ENSMUSG00000014349) #9	Atp5g1 (ENSMUSG00000006057) #10	Calcoco2 (ENSMUSG00000006056) #11	Ttll6 (ENSMUSG00000038756) #12	Hoxb13 (ENSMUSG00000049604) #13	Hoxb9 (ENSMUSG00000020875) #14	Hoxb8 (ENSMUSG00000056648) #15	Hoxb7 (ENSMUSG00000038721) #16	Hoxb6 (ENSMUSG00000000690) #17	Hoxb5 (ENSMUSG00000038700) #18	Hoxb4 (ENSMUSG00000038692) #19	Hoxb3 (ENSMUSG00000048763) #21	Hoxb2 (ENSMUSG00000075588) #22	Hoxb1 (ENSMUSG00000018973) #23	Skap1 (ENSMUSG00000057058) #24	Snx11 (ENSMUSG00000020876) #25	Cbx1 (ENSMUSG00000018666) #27	Nfe2l1 (ENSMUSG00000038615) #28	Copz2 (ENSMUSG00000018672) #29	Cdk5rap3 (ENSMUSG00000018669) #30	Prr15l (ENSMUSG00000047040) #31	Pnpo (ENSMUSG00000018659) #32	Sp2 (ENSMUSG00000018678) #33	Sp6 (ENSMUSG00000038560) #34	Scrn2 (ENSMUSG00000020877) #35	Lrrc46 (ENSMUSG00000020878) #36	Mrpl10 (ENSMUSG00000001445) #37	Osbpl7 (ENSMUSG00000038534)
Ryukyu mouse	MODERN SPECIES	2	Igf2bp1 (MGP_CAROLIEiJ_G0017016)	Gip (MGP_CAROLIEiJ_G0017017) #7	Snf8 (MGP_CAROLIEiJ_G0017018) #8	MGP_CAROLIEiJ_G0017019 #9	MGP_CAROLIEiJ_G0017020 #10	MGP_CAROLIEiJ_G0017021 #11	Ttll6 (MGP_CAROLIEiJ_G0017022) #12	Hoxb13 (MGP_CAROLIEiJ_G0017023) #13	Hoxb9 (MGP_CAROLIEiJ_G0017024) #14	Hoxb8 (MGP_CAROLIEiJ_G0017025) #15	Hoxb7 (MGP_CAROLIEiJ_G0017026) #16	Hoxb6 (MGP_CAROLIEiJ_G0017027) #17	Hoxb5 (MGP_CAROLIEiJ_G0017028) #18	Hoxb4 (MGP_CAROLIEiJ_G0017029) #19	Hoxb3 (MGP_CAROLIEiJ_G0017030) #21	Hoxb2 (MGP_CAROLIEiJ_G0017031) #22	Hoxb1 (MGP_CAROLIEiJ_G0017032) #23	Skap1 (MGP_CAROLIEiJ_G0017033) #24	Snx11 (MGP_CAROLIEiJ_G0017034) #25	Cbx1 (MGP_CAROLIEiJ_G0017035) #27	MGP_CAROLIEiJ_G0017036 #26	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #28	Copz2 (MGP_CAROLIEiJ_G0017038) #29	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #30	Prr15l (MGP_CAROLIEiJ_G0017040) #31	Pnpo (MGP_CAROLIEiJ_G0017041) #32	Sp2 (MGP_CAROLIEiJ_G0017042) #33	Sp6 (MGP_CAROLIEiJ_G0017043) #34	MGP_CAROLIEiJ_G0017044 #35	Lrrc46 (MGP_CAROLIEiJ_G0017045) #36	Mrpl10 (MGP_CAROLIEiJ_G0017046) #37