Glires ANCESTRAL SPECIES 3 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00990000209473 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Rodentia ANCESTRAL SPECIES 4 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00990000209473 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Rodentia_B ANCESTRAL SPECIES 1 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Myomorpha ANCESTRAL SPECIES ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Muroidea ANCESTRAL SPECIES ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Murinae ANCESTRAL SPECIES 6 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Mus ANCESTRAL SPECIES 2 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00940000153593.c.b.k #26 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 Mus_A ANCESTRAL SPECIES 2 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00940000153593.c.b.k #26 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00940000153593.c.b.k #26 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 Mus_C ANCESTRAL SPECIES 3 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00940000153593.c.b.k #26 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 Steppe mouse MODERN SPECIES 3291 Gip (ENSMSIG00000019162) #7 Snf8 (ENSMSIG00000019072) #8 Ube2z (ENSMSIG00000019038) #9 Atp5g1 (ENSMSIG00000018986) #10 ENSMSIG00000018956 #11 Ttll6 (ENSMSIG00000018881) #12 Hoxb13 (ENSMSIG00000018865) #13 Hoxb9 (ENSMSIG00000018823) #14 Hoxb8 (ENSMSIG00000018807) #15 Hoxb7 (ENSMSIG00000018805) #16 Hoxb6 (ENSMSIG00000018795) #17 Hoxb5 (ENSMSIG00000018787) #18 Hoxb4 (ENSMSIG00000018777) #19 ENSMSIG00000018776 #20 Hoxb3 (ENSMSIG00000018771) #21 Hoxb2 (ENSMSIG00000018769) #22 Hoxb1 (ENSMSIG00000018752) #23 Skap1 (ENSMSIG00000018601) #24 Snx11 (ENSMSIG00000018546) #25 ENSMSIG00000018520 #26 Cbx1 (ENSMSIG00000018447) #27 Nfe2l1 (ENSMSIG00000018374) #28 Copz2 (ENSMSIG00000018337) #29 Cdk5rap3 (ENSMSIG00000018309) #30 ENSMSIG00000018270 #31 ENSMSIG00000018267 #32 Sp2 (ENSMSIG00000018237) #33 Sp6 (ENSMSIG00000018223) #34 Scrn2 (ENSMSIG00000018202) #35 Lrrc46 (ENSMSIG00000018171) #36 Mrpl10 (ENSMSIG00000018160) #37 spretus MODERN SPECIES 2 Igf2bp1 (MGP_SPRETEiJ_G0017862) Gip (MGP_SPRETEiJ_G0017863) #7 Snf8 (MGP_SPRETEiJ_G0017864) #8 Ube2z (MGP_SPRETEiJ_G0017865) #9 Atp5g1 (MGP_SPRETEiJ_G0017866) #10 MGP_SPRETEiJ_G0017867 #11 Ttll6 (MGP_SPRETEiJ_G0017868) #12 Hoxb13 (MGP_SPRETEiJ_G0017869) #13 Hoxb9 (MGP_SPRETEiJ_G0017870) #14 Hoxb8 (MGP_SPRETEiJ_G0017871) #15 Hoxb7 (MGP_SPRETEiJ_G0017872) #16 Hoxb6 (MGP_SPRETEiJ_G0017873) #17 Hoxb5 (MGP_SPRETEiJ_G0017874) #18 Hoxb4 (MGP_SPRETEiJ_G0017875) #19 Hoxb3 (MGP_SPRETEiJ_G0017876) #21 Hoxb2 (MGP_SPRETEiJ_G0017877) #22 Hoxb1 (MGP_SPRETEiJ_G0017878) #23 MGP_SPRETEiJ_G0017879 #24 Snx11 (MGP_SPRETEiJ_G0017880) #25 Cbx1 (MGP_SPRETEiJ_G0017881) #27 MGP_SPRETEiJ_G0017882 #26 Nfe2l1 (MGP_SPRETEiJ_G0017883) #28 Copz2 (MGP_SPRETEiJ_G0017884) #29 Cdk5rap3 (MGP_SPRETEiJ_G0017885) #30 Prr15l (MGP_SPRETEiJ_G0017886) #31 Pnpo (MGP_SPRETEiJ_G0017887) #32 Sp2 (MGP_SPRETEiJ_G0017888) #33 Sp6 (MGP_SPRETEiJ_G0017889) #34 Scrn2 (MGP_SPRETEiJ_G0017890) #35 Lrrc46 (MGP_SPRETEiJ_G0017891) #36 Mrpl10 (MGP_SPRETEiJ_G0017892) #37 Mouse MODERN SPECIES 2 Igf2bp1 (ENSMUSG00000013415) Gip (ENSMUSG00000014351) #7 Snf8 (ENSMUSG00000006058) #8 Ube2z (ENSMUSG00000014349) #9 Atp5g1 (ENSMUSG00000006057) #10 Calcoco2 (ENSMUSG00000006056) #11 Ttll6 (ENSMUSG00000038756) #12 Hoxb13 (ENSMUSG00000049604) #13 Hoxb9 (ENSMUSG00000020875) #14 Hoxb8 (ENSMUSG00000056648) #15 Hoxb7 (ENSMUSG00000038721) #16 Hoxb6 (ENSMUSG00000000690) #17 Hoxb5 (ENSMUSG00000038700) #18 Hoxb4 (ENSMUSG00000038692) #19 Hoxb3 (ENSMUSG00000048763) #21 Hoxb2 (ENSMUSG00000075588) #22 Hoxb1 (ENSMUSG00000018973) #23 Skap1 (ENSMUSG00000057058) #24 Snx11 (ENSMUSG00000020876) #25 Cbx1 (ENSMUSG00000018666) #27 Nfe2l1 (ENSMUSG00000038615) #28 Copz2 (ENSMUSG00000018672) #29 Cdk5rap3 (ENSMUSG00000018669) #30 Prr15l (ENSMUSG00000047040) #31 Pnpo (ENSMUSG00000018659) #32 Sp2 (ENSMUSG00000018678) #33 Sp6 (ENSMUSG00000038560) #34 Scrn2 (ENSMUSG00000020877) #35 Lrrc46 (ENSMUSG00000020878) #36 Mrpl10 (ENSMUSG00000001445) #37 Osbpl7 (ENSMUSG00000038534) Ryukyu mouse MODERN SPECIES 2 Igf2bp1 (MGP_CAROLIEiJ_G0017016) Gip (MGP_CAROLIEiJ_G0017017) #7 Snf8 (MGP_CAROLIEiJ_G0017018) #8 MGP_CAROLIEiJ_G0017019 #9 MGP_CAROLIEiJ_G0017020 #10 MGP_CAROLIEiJ_G0017021 #11 Ttll6 (MGP_CAROLIEiJ_G0017022) #12 Hoxb13 (MGP_CAROLIEiJ_G0017023) #13 Hoxb9 (MGP_CAROLIEiJ_G0017024) #14 Hoxb8 (MGP_CAROLIEiJ_G0017025) #15 Hoxb7 (MGP_CAROLIEiJ_G0017026) #16 Hoxb6 (MGP_CAROLIEiJ_G0017027) #17 Hoxb5 (MGP_CAROLIEiJ_G0017028) #18 Hoxb4 (MGP_CAROLIEiJ_G0017029) #19 Hoxb3 (MGP_CAROLIEiJ_G0017030) #21 Hoxb2 (MGP_CAROLIEiJ_G0017031) #22 Hoxb1 (MGP_CAROLIEiJ_G0017032) #23 Skap1 (MGP_CAROLIEiJ_G0017033) #24 Snx11 (MGP_CAROLIEiJ_G0017034) #25 Cbx1 (MGP_CAROLIEiJ_G0017035) #27 MGP_CAROLIEiJ_G0017036 #26 Nfe2l1 (MGP_CAROLIEiJ_G0017037) #28 Copz2 (MGP_CAROLIEiJ_G0017038) #29 Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #30 Prr15l (MGP_CAROLIEiJ_G0017040) #31 Pnpo (MGP_CAROLIEiJ_G0017041) #32 Sp2 (MGP_CAROLIEiJ_G0017042) #33 Sp6 (MGP_CAROLIEiJ_G0017043) #34 MGP_CAROLIEiJ_G0017044 #35 Lrrc46 (MGP_CAROLIEiJ_G0017045) #36 Mrpl10 (MGP_CAROLIEiJ_G0017046) #37 Shrew mouse MODERN SPECIES 5 MGP_PahariEiJ_G0018146 Gip (MGP_PahariEiJ_G0018147) #7 Snf8 (MGP_PahariEiJ_G0018148) #8 Ube2z (MGP_PahariEiJ_G0018149) #9 Atp5g1 (MGP_PahariEiJ_G0018150) #10 MGP_PahariEiJ_G0018151 #11 Ttll6 (MGP_PahariEiJ_G0018152) #12 Hoxb13 (MGP_PahariEiJ_G0018153) #13 Hoxb9 (MGP_PahariEiJ_G0018154) #14 Hoxb8 (MGP_PahariEiJ_G0018155) #15 Hoxb7 (MGP_PahariEiJ_G0018156) #16 Hoxb6 (MGP_PahariEiJ_G0018157) #17 Hoxb5 (MGP_PahariEiJ_G0018158) #18 Hoxb4 (MGP_PahariEiJ_G0018159) #19 Hoxb3 (MGP_PahariEiJ_G0018160) #21 Hoxb2 (MGP_PahariEiJ_G0018161) #22 Hoxb1 (MGP_PahariEiJ_G0018162) #23 Skap1 (MGP_PahariEiJ_G0018163) #24 Snx11 (MGP_PahariEiJ_G0018164) #25 Cbx1 (MGP_PahariEiJ_G0018165) #27 MGP_PahariEiJ_G0018166 #26 Nfe2l1 (MGP_PahariEiJ_G0018167) #28 Copz2 (MGP_PahariEiJ_G0018168) #29 Cdk5rap3 (MGP_PahariEiJ_G0018169) #30 Prr15l (MGP_PahariEiJ_G0018170) #31 Pnpo (MGP_PahariEiJ_G0018171) #32 Sp2 (MGP_PahariEiJ_G0018172) #33 Sp6 (MGP_PahariEiJ_G0018173) #34 Scrn2 (MGP_PahariEiJ_G0018174) #35 Lrrc46 (MGP_PahariEiJ_G0018175) #36 Mrpl10 (MGP_PahariEiJ_G0018176) #37 Rat MODERN SPECIES 1 B4galnt2 (ENSRNOG00000067203) Igf2bp1 (ENSRNOG00000006122) Gip (ENSRNOG00000006306) #7 Snf8 (ENSRNOG00000006500) #8 Ube2z (ENSRNOG00000006868) #9 ENSRNOG00000066153 #11 Ttll6 (ENSRNOG00000004939) #12 Hoxb13 (ENSRNOG00000007491) #13 Hoxb9 (ENSRNOG00000007573) #14 Hoxb8 (ENSRNOG00000007585) #15 Hoxb7 (ENSRNOG00000007611) #16 Hoxb6 (ENSRNOG00000007823) #17 Hoxb5 (ENSRNOG00000008010) #18 Hoxb4 (ENSRNOG00000008191) #19 Hoxb3 (ENSRNOG00000008313) #21 Hoxb2 (ENSRNOG00000008365) #22 Hoxb1 (ENSRNOG00000008506) #23 Skap1 (ENSRNOG00000023881) #24 Snx11 (ENSRNOG00000008642) #25 Cbx1 (ENSRNOG00000008689) #27 Nfe2l1 (ENSRNOG00000008830) #28 Copz2 (ENSRNOG00000009225) #29 Cdk5rap3 (ENSRNOG00000048747) #30 Prr15l (ENSRNOG00000049162) #31 Pnpo (ENSRNOG00000046493) #32 Sp2 (ENSRNOG00000010492) #33 Sp6 (ENSRNOG00000023551) #34 Scrn2 (ENSRNOG00000010214) #35 Lrrc46 (ENSRNOG00000009902) #36 Mrpl10 (ENSRNOG00000009567) #37 Osbpl7 (ENSRNOG00000009473) Cricetidae ANCESTRAL SPECIES ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720.`b.a.a #10 ENSGT00940000159720.ab #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.a.a ##27 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 Cricetidae_B ANCESTRAL SPECIES ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720.`b.a.a #10 ENSGT00940000159720.ab #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Northern American deer mouse MODERN SPECIES 21 Gngt2 (ENSPEMG00000027491) B4galnt2 (ENSPEMG00000020717) Igf2bp1 (ENSPEMG00000021974) Gip (ENSPEMG00000021184) #7 Snf8 (ENSPEMG00000022229) #8 Ube2z (ENSPEMG00000020953) #9 Atp5g1 (ENSPEMG00000020590) #10 ENSPEMG00000028729 #11 ENSPEMG00000025676 #11 Ttll6 (ENSPEMG00000021918) #12 Hoxb13 (ENSPEMG00000021511) #13 Hoxb9 (ENSPEMG00000027158) #14 Hoxb5 (ENSPEMG00000030101) #18 Hoxb4 (ENSPEMG00000029805) #19 Hoxb3 (ENSPEMG00000028692) #21 Hoxb2 (ENSPEMG00000029510) #22 Hoxb1 (ENSPEMG00000023977) #23 Skap1 (ENSPEMG00000000585) #24 ENSPEMG00000020286 Snx11 (ENSPEMG00000000381) #25 Cbx1 (ENSPEMG00000020976) ##27 Nfe2l1 (ENSPEMG00000010512) #28 Copz2 (ENSPEMG00000011137) #29 Cdk5rap3 (ENSPEMG00000020712) #30 ENSPEMG00000030963 Prr15l (ENSPEMG00000024436) #31 Pnpo (ENSPEMG00000025094) #32 Sp2 (ENSPEMG00000017112) #33 Sp6 (ENSPEMG00000001231) #34 Scrn2 (ENSPEMG00000020381) #35 Lrrc46 (ENSPEMG00000020507) #36 Prairie vole MODERN SPECIES 114 ENSMOCG00000004266 ENSMOCG00000021226 #7 Snf8 (ENSMOCG00000016684) #8 Ube2z (ENSMOCG00000018241) #9 ENSMOCG00000013163 #10 Ttll6 (ENSMOCG00000021089) #12 Hoxb13 (ENSMOCG00000021389) #13 Hoxb9 (ENSMOCG00000020312) #14 Hoxb8 (ENSMOCG00000018435) #15 Hoxb7 (ENSMOCG00000020820) #16 Hoxb6 (ENSMOCG00000020355) #17 Hoxb5 (ENSMOCG00000014523) #18 Hoxb4 (ENSMOCG00000022964) #19 Hoxb3 (ENSMOCG00000020739) #21 Hoxb2 (ENSMOCG00000014846) #22 Hoxb1 (ENSMOCG00000002452) #23 Skap1 (ENSMOCG00000018431) #24 Snx11 (ENSMOCG00000019303) #25 Cbx1 (ENSMOCG00000001520) #27 Nfe2l1 (ENSMOCG00000016002) #28 Copz2 (ENSMOCG00000022427) #29 Cdk5rap3 (ENSMOCG00000019534) #30 Prr15l (ENSMOCG00000006695) #31 Pnpo (ENSMOCG00000011655) #32 Sp2 (ENSMOCG00000020935) #33 Sp6 (ENSMOCG00000007065) #34 Scrn2 (ENSMOCG00000019511) #35 Lrrc46 (ENSMOCG00000016707) #36 Mrpl10 (ENSMOCG00000019451) #37 Osbpl7 (ENSMOCG00000021054) Cricetinae ANCESTRAL SPECIES ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000159720.`b.a.a #10 ENSGT00940000159720.`b.b #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.a.b ##27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Golden Hamster MODERN SPECIES 674 Gngt2 (ENSMAUG00000019144) B4galnt2 (ENSMAUG00000007916) Gip (ENSMAUG00000009238) #7 Snf8 (ENSMAUG00000001857) #8 Ube2z (ENSMAUG00000007792) #9 ENSMAUG00000021751 #10 Ttll6 (ENSMAUG00000020973) #12 Hoxb13 (ENSMAUG00000008407) #13 Hoxb9 (ENSMAUG00000017720) #14 Hoxb8 (ENSMAUG00000012636) #15 Hoxb7 (ENSMAUG00000021297) #16 Hoxb6 (ENSMAUG00000021423) #17 Hoxb5 (ENSMAUG00000021419) #18 Hoxb4 (ENSMAUG00000009367) #19 Hoxb3 (ENSMAUG00000011251) #21 Hoxb2 (ENSMAUG00000021979) #22 Hoxb1 (ENSMAUG00000013237) #23 Skap1 (ENSMAUG00000022191) #24 Snx11 (ENSMAUG00000021528) #25 ENSMAUG00000003463 ##27 Nfe2l1 (ENSMAUG00000020456) #28 Copz2 (ENSMAUG00000010560) #29 Cdk5rap3 (ENSMAUG00000007991) #30 Pnpo (ENSMAUG00000021706) #32 Sp2 (ENSMAUG00000019269) #33 Sp6 (ENSMAUG00000009667) #34 Scrn2 (ENSMAUG00000010014) #35 Lrrc46 (ENSMAUG00000019416) #36 Mrpl10 (ENSMAUG00000000820) #37 Osbpl7 (ENSMAUG00000013876) Tbx21 (ENSMAUG00000017507) Chinese hamster chok1gshd MODERN SPECIES 33 Gip (ENSCGRG00001021533) #7 Snf8 (ENSCGRG00001000737) #8 Ube2z (ENSCGRG00001019150) #9 ENSCGRG00001022606 #10 ENSCGRG00001010560 ENSCGRG00001011435 #11 Ttll6 (ENSCGRG00001018398) #12 Hoxb13 (ENSCGRG00001015060) #13 Hoxb9 (ENSCGRG00001015314) #14 Hoxb8 (ENSCGRG00001020235) #15 Hoxb7 (ENSCGRG00001021590) #16 Hoxb6 (ENSCGRG00001015674) #17 Hoxb5 (ENSCGRG00001016167) #18 Hoxb4 (ENSCGRG00001022431) #19 Hoxb3 (ENSCGRG00001016667) #21 Hoxb2 (ENSCGRG00001017587) #22 Hoxb1 (ENSCGRG00001024619) #23 ENSCGRG00001023355 #24 ENSCGRG00001020759 #24 Snx11 (ENSCGRG00001022221) #25 Cbx1 (ENSCGRG00001014799) ##27 Nfe2l1 (ENSCGRG00001015287) #28 Copz2 (ENSCGRG00001014767) #29 Cdk5rap3 (ENSCGRG00001006966) #30 Prr15l (ENSCGRG00001008926) #31 Pnpo (ENSCGRG00001018189) #32 Sp2 (ENSCGRG00001010976) #33 Sp6 (ENSCGRG00001002797) #34 Scrn2 (ENSCGRG00001022143) #35 Lrrc46 (ENSCGRG00001019758) #36 Mrpl10 (ENSCGRG00001024199) #37 Upper Galilee mountains blind mole rat MODERN SPECIES 1028 Igf2bp1 (ENSNGAG00000015679) Gip (ENSNGAG00000020354) #7 Snf8 (ENSNGAG00000001366) #8 Ube2z (ENSNGAG00000024296) #9 ENSNGAG00000024212 #10 ENSNGAG00000023585 #11 Ttll6 (ENSNGAG00000011763) #12 Hoxb13 (ENSNGAG00000011053) #13 Hoxb9 (ENSNGAG00000010851) #14 Hoxb8 (ENSNGAG00000010647) #15 Hoxb7 (ENSNGAG00000010205) #16 Hoxb6 (ENSNGAG00000000973) #17 Hoxb5 (ENSNGAG00000023238) #18 Hoxb4 (ENSNGAG00000021768) #19 Hoxb3 (ENSNGAG00000020227) #21 Hoxb2 (ENSNGAG00000019089) #22 Hoxb1 (ENSNGAG00000018593) #23 Skap1 (ENSNGAG00000012571) #24 Snx11 (ENSNGAG00000010446) #25 Cbx1 (ENSNGAG00000006760) #27 Nfe2l1 (ENSNGAG00000000736) #28 Copz2 (ENSNGAG00000023713) #29 ENSNGAG00000000747 #30 ENSNGAG00000022529 Prr15l (ENSNGAG00000021432) #31 Pnpo (ENSNGAG00000020016) #32 Sp2 (ENSNGAG00000017612) #33 Sp6 (ENSNGAG00000015868) #34 Scrn2 (ENSNGAG00000023806) #35 Lrrc46 (ENSNGAG00000022557) #36 Mrpl10 (ENSNGAG00000022195) #37 Lesser Egyptian jerboa MODERN SPECIES 56 B4galnt2 (ENSJJAG00000006322) Igf2bp1 (ENSJJAG00000002687) Gip (ENSJJAG00000010688) #7 Snf8 (ENSJJAG00000006012) #8 ENSJJAG00000003530 #9 ENSJJAG00000010301 #10 Ttll6 (ENSJJAG00000010253) #12 Hoxb13 (ENSJJAG00000010401) #13 Hoxb9 (ENSJJAG00000009821) #14 Hoxb8 (ENSJJAG00000002398) #15 Hoxb7 (ENSJJAG00000001284) #16 Hoxb6 (ENSJJAG00000000997) #17 Hoxb5 (ENSJJAG00000000763) #18 Hoxb4 (ENSJJAG00000002642) #19 Hoxb3 (ENSJJAG00000007804) #21 Hoxb2 (ENSJJAG00000009465) #22 Hoxb1 (ENSJJAG00000001073) #23 Skap1 (ENSJJAG00000003458) #24 ENSJJAG00000005754 #25 ENSJJAG00000007753 ##27 Nfe2l1 (ENSJJAG00000006432) #28 Copz2 (ENSJJAG00000001025) #29 ENSJJAG00000002511 #30 Prr15l (ENSJJAG00000006478) #31 Pnpo (ENSJJAG00000023608) #32 Sp2 (ENSJJAG00000003061) #33 Sp6 (ENSJJAG00000006452) #34 Scrn2 (ENSJJAG00000023635) #35 Lrrc46 (ENSJJAG00000010412) #36 Mrpl10 (ENSJJAG00000004046) #37 Osbpl7 (ENSJJAG00000004477) Kangaroo rat MODERN SPECIES 326 Gngt2 (ENSDORG00000023588) Igf2bp1 (ENSDORG00000014371) Snf8 (ENSDORG00000009262) #8 Ube2z (ENSDORG00000009258) #9 ENSDORG00000008511 ENSDORG00000028385 ENSDORG00000024585 #11 Hoxb13 (ENSDORG00000008369) #13 Hoxb9 (ENSDORG00000027423) #14 Hoxb8 (ENSDORG00000007906) #15 Hoxb7 (ENSDORG00000007905) #16 Hoxb6 (ENSDORG00000023877) #17 Hoxb5 (ENSDORG00000007900) #18 Hoxb4 (ENSDORG00000007899) #19 Hoxb3 (ENSDORG00000007898) #21 Hoxb2 (ENSDORG00000007897) #22 Hoxb1 (ENSDORG00000007896) #23 Snx11 (ENSDORG00000029078) #25 Cbx1 (ENSDORG00000026399) #27 Nfe2l1 (ENSDORG00000000715) #28 Copz2 (ENSDORG00000013441) #29 Prr15l (ENSDORG00000027427) #31 Pnpo (ENSDORG00000014110) #32 Sp2 (ENSDORG00000014109) #33 Sp6 (ENSDORG00000026201) #34 Scrn2 (ENSDORG00000002361) #35 Osbpl7 (ENSDORG00000002354) Tbx21 (ENSDORG00000013302) Npepps (ENSDORG00000009627) Socs7 (ENSDORG00000028979) ENSDORG00000007713 Rodentia_A ANCESTRAL SPECIES 3 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00990000209473 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Hystricomorpha ANCESTRAL SPECIES 3 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Naked mole-rat female MODERN SPECIES 12 ENSHGLG00000010703 #7 SNF8 (ENSHGLG00000011519) #8 UBE2Z (ENSHGLG00000016280) #9 ATP5MC1 (ENSHGLG00000035460) CALCOCO2 (ENSHGLG00000012114) #11 TTLL6 (ENSHGLG00000019187) #12 HOXB13 (ENSHGLG00000014634) #13 ENSHGLG00000048296 HOXB9 (ENSHGLG00000014731) #14 HOXB8 (ENSHGLG00000038380) #15 HOXB7 (ENSHGLG00000045318) #16 HOXB6 (ENSHGLG00000012400) #17 HOXB5 (ENSHGLG00000039265) #18 HOXB4 (ENSHGLG00000034075) #19 HOXB3 (ENSHGLG00000010686) #21 HOXB2 (ENSHGLG00000010090) #22 HOXB1 (ENSHGLG00000009781) #23 SKAP1 (ENSHGLG00000014563) #24 SNX11 (ENSHGLG00000016837) #25 CBX1 (ENSHGLG00000013574) #27 NFE2L1 (ENSHGLG00000012592) #28 COPZ2 (ENSHGLG00000018543) #29 CDK5RAP3 (ENSHGLG00000019464) #30 PRR15L (ENSHGLG00000014696) #31 PNPO (ENSHGLG00000013159) #32 SP2 (ENSHGLG00000009902) #33 SP6 (ENSHGLG00000021113) #34 SCRN2 (ENSHGLG00000041375) #35 LRRC46 (ENSHGLG00000035931) #36 MRPL10 (ENSHGLG00000048399) #37 OSBPL7 (ENSHGLG00000012525) Hystricomorpha_a ANCESTRAL SPECIES ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Guinea pig MODERN SPECIES 53 GNGT2 (ENSCPOG00000030054) B4GALNT2 (ENSCPOG00000006191) IGF2BP1 (ENSCPOG00000020174) GIP (ENSCPOG00000023966) #7 SNF8 (ENSCPOG00000020610) #8 UBE2Z (ENSCPOG00000024416) #9 ENSCPOG00000009017 CALCOCO2 (ENSCPOG00000021273) #11 TTLL6 (ENSCPOG00000012509) #12 HOXB13 (ENSCPOG00000013509) #13 HOXB9 (ENSCPOG00000037597) #14 HOXB6 (ENSCPOG00000040707) #17 HOXB5 (ENSCPOG00000030746) #18 ENSCPOG00000010105 ENSCPOG00000010107 #21 HOXB2 (ENSCPOG00000035468) #22 HOXB1 (ENSCPOG00000022183) #23 SKAP1 (ENSCPOG00000022118) #24 SNX11 (ENSCPOG00000020234) #25 CBX1 (ENSCPOG00000034435) #27 NFE2L1 (ENSCPOG00000030805) #28 COPZ2 (ENSCPOG00000019500) #29 CDK5RAP3 (ENSCPOG00000007275) #30 PRR15L (ENSCPOG00000035567) #31 PNPO (ENSCPOG00000003187) #32 SP2 (ENSCPOG00000014943) #33 SP6 (ENSCPOG00000007638) #34 SCRN2 (ENSCPOG00000006929) #35 LRRC46 (ENSCPOG00000006925) #36 MRPL10 (ENSCPOG00000037104) #37 OSBPL7 (ENSCPOG00000006914) Hystricomorpha_b ANCESTRAL SPECIES ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Long-tailed chinchilla MODERN SPECIES 158 B4GALNT2 (ENSCLAG00000016224) IGF2BP1 (ENSCLAG00000015853) ENSCLAG00000014301 #7 SNF8 (ENSCLAG00000013387) #8 UBE2Z (ENSCLAG00000016068) #9 ATP5MC1 (ENSCLAG00000015723) CALCOCO2 (ENSCLAG00000015881) #11 TTLL6 (ENSCLAG00000013529) #12 HOXB13 (ENSCLAG00000014855) #13 ENSCLAG00000015198 #14 HOXB7 (ENSCLAG00000014906) #16 HOXB6 (ENSCLAG00000015524) #17 HOXB5 (ENSCLAG00000014374) #18 HOXB4 (ENSCLAG00000014725) #19 HOXB3 (ENSCLAG00000015322) #21 HOXB2 (ENSCLAG00000015271) #22 HOXB1 (ENSCLAG00000013047) #23 SKAP1 (ENSCLAG00000015423) #24 SNX11 (ENSCLAG00000015837) #25 CBX1 (ENSCLAG00000013587) #27 NFE2L1 (ENSCLAG00000014836) #28 COPZ2 (ENSCLAG00000013544) #29 CDK5RAP3 (ENSCLAG00000012292) #30 PRR15L (ENSCLAG00000017903) #31 PNPO (ENSCLAG00000013871) #32 SP2 (ENSCLAG00000014115) #33 SP6 (ENSCLAG00000016276) #34 LRRC46 (ENSCLAG00000016713) #36 SCRN2 (ENSCLAG00000013965) #35 MRPL10 (ENSCLAG00000015400) #37 OSBPL7 (ENSCLAG00000014839) Degu MODERN SPECIES 97 B4GALNT2 (ENSODEG00000018456) ENSODEG00000016991 ENSODEG00000017109 GIP (ENSODEG00000017003) #7 ENSODEG00000017032 #8 UBE2Z (ENSODEG00000017306) #9 ATP5MC1 (ENSODEG00000017366) TTLL6 (ENSODEG00000017145) #12 HOXB13 (ENSODEG00000017199) #13 HOXB9 (ENSODEG00000017293) #14 HOXB8 (ENSODEG00000017119) #15 HOXB6 (ENSODEG00000016988) #17 HOXB5 (ENSODEG00000017253) #18 HOXB4 (ENSODEG00000017038) #19 HOXB3 (ENSODEG00000017116) #21 HOXB2 (ENSODEG00000017153) #22 HOXB1 (ENSODEG00000017050) #23 SKAP1 (ENSODEG00000017533) #24 SNX11 (ENSODEG00000017458) #25 CBX1 (ENSODEG00000017272) #27 NFE2L1 (ENSODEG00000017348) #28 ENSODEG00000020421 COPZ2 (ENSODEG00000017565) #29 ENSODEG00000017229 #30 PNPO (ENSODEG00000017424) #32 SP2 (ENSODEG00000017126) #33 SP6 (ENSODEG00000017625) #34 SCRN2 (ENSODEG00000017395) #35 LRRC46 (ENSODEG00000017367) #36 MRPL10 (ENSODEG00000017536) #37 OSBPL7 (ENSODEG00000017364) Sciuridae ANCESTRAL SPECIES 4 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00990000209473 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Marmotini ANCESTRAL SPECIES 8 ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Marmotini_b ANCESTRAL SPECIES 5 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00940000159720 #10 ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161230 #16 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000162072 #19 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc.b #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Squirrel MODERN SPECIES 90 GIP (ENSSTOG00000004043) #7 SNF8 (ENSSTOG00000004023) #8 UBE2Z (ENSSTOG00000000796) #9 ATP5MC1 (ENSSTOG00000013404) ENSSTOG00000013395 #11 TTLL6 (ENSSTOG00000006016) #12 ENSSTOG00000025444 HOXB13 (ENSSTOG00000014942) #13 HOXB9 (ENSSTOG00000009741) #14 HOXB8 (ENSSTOG00000028337) #15 HOXB7 (ENSSTOG00000025657) #16 HOXB6 (ENSSTOG00000020303) #17 HOXB5 (ENSSTOG00000009740) #18 HOXB4 (ENSSTOG00000009734) #19 HOXB3 (ENSSTOG00000025093) #21 HOXB2 (ENSSTOG00000023586) #22 HOXB1 (ENSSTOG00000028630) #23 SKAP1 (ENSSTOG00000013692) #24 SNX11 (ENSSTOG00000013684) #25 CBX1 (ENSSTOG00000023986) #27 NFE2L1 (ENSSTOG00000013664) #28 ENSSTOG00000027550 #29 CDK5RAP3 (ENSSTOG00000006244) #30 PRR15L (ENSSTOG00000006235) #31 PNPO (ENSSTOG00000006221) #32 SP2 (ENSSTOG00000015926) #33 SP6 (ENSSTOG00000001607) #34 SCRN2 (ENSSTOG00000027108) #35 LRRC46 (ENSSTOG00000002068) #36 MRPL10 (ENSSTOG00000024617) #37 OSBPL7 (ENSSTOG00000001636) Arctic ground squirrel MODERN SPECIES 46 IGF2BP1 (ENSUPAG00010006100) GIP (ENSUPAG00010006136) #7 SNF8 (ENSUPAG00010006148) #8 UBE2Z (ENSUPAG00010006178) #9 ENSUPAG00010006195 #10 CALCOCO2 (ENSUPAG00010006243) #11 TTLL6 (ENSUPAG00010006267) #12 HOXB13 (ENSUPAG00010006301) #13 HOXB9 (ENSUPAG00010006305) #14 HOXB8 (ENSUPAG00010006310) #15 HOXB7 (ENSUPAG00010006312) #16 HOXB6 (ENSUPAG00010006317) #17 HOXB5 (ENSUPAG00010006320) #18 HOXB4 (ENSUPAG00010006325) #19 HOXB3 (ENSUPAG00010006328) #21 HOXB2 (ENSUPAG00010006336) #22 HOXB1 (ENSUPAG00010006340) #23 SKAP1 (ENSUPAG00010006345) #24 SNX11 (ENSUPAG00010006370) #25 CBX1 (ENSUPAG00010006381) #27 NFE2L1 (ENSUPAG00010006396) #28 COPZ2 (ENSUPAG00010006455) #29 CDK5RAP3 (ENSUPAG00010006466) #30 PRR15L (ENSUPAG00010006473) #31 PNPO (ENSUPAG00010006483) #32 SP2 (ENSUPAG00010006507) #33 SP6 (ENSUPAG00010006522) #34 SCRN2 (ENSUPAG00010006526) #35 LRRC46 (ENSUPAG00010006533) #36 MRPL10 (ENSUPAG00010006539) #37 OSBPL7 (ENSUPAG00010006545) Eurasian red squirrel MODERN SPECIES 12 GIP (ENSSVLG00005020522) #7 SNF8 (ENSSVLG00005020472) #8 ENSSVLG00005020450 UBE2Z (ENSSVLG00005020428) #9 ATP5MC1 (ENSSVLG00005020344) CALCOCO2 (ENSSVLG00005020296) #11 TTLL6 (ENSSVLG00005020005) #12 HOXB13 (ENSSVLG00005019820) #13 HOXB9 (ENSSVLG00005019725) #14 HOXB8 (ENSSVLG00005019675) #15 HOXB7 (ENSSVLG00005019618) #16 HOXB6 (ENSSVLG00005019586) #17 HOXB5 (ENSSVLG00005019546) #18 HOXB4 (ENSSVLG00005019455) #19 HOXB3 (ENSSVLG00005019421) #21 HOXB2 (ENSSVLG00005019378) #22 HOXB1 (ENSSVLG00005019304) #23 SKAP1 (ENSSVLG00005019232) #24 SNX11 (ENSSVLG00005019122) #25 CBX1 (ENSSVLG00005019034) #27 NFE2L1 (ENSSVLG00005018798) #28 COPZ2 (ENSSVLG00005018641) #29 CDK5RAP3 (ENSSVLG00005018459) #30 PRR15L (ENSSVLG00005018399) #31 PNPO (ENSSVLG00005018295) #32 ENSSVLG00005018218 #33 SP6 (ENSSVLG00005018194) #34 SCRN2 (ENSSVLG00005018077) #35 LRRC46 (ENSSVLG00005018036) #36 MRPL10 (ENSSVLG00005017985) #37 OSBPL7 (ENSSVLG00005017757) Lagomorpha ANCESTRAL SPECIES ENSGT01100000263525.b.a ENSGT00390000006679.b ENSGT00940000160427 ENSGT00390000005121 #7 ENSGT00390000007843 #8 ENSGT00940000159091 #9 ENSGT00940000154298.a.b ENSGT00950000183025.a #11 ENSGT00940000161434 #12 ENSGT00940000159029 #13 ENSGT00940000161386 #14 ENSGT00940000161529 #15 ENSGT00940000161108 #17 ENSGT00940000158354 #18 ENSGT00940000159774 #21 ENSGT00940000155029.c.b #22 ENSGT00940000159503 #23 ENSGT00390000017856.b #24 ENSGT00940000160113 #25 ENSGT00940000154152.d.b.dc #27 ENSGT00950000182892.a.b.a.a #28 ENSGT00390000004405.b #29 ENSGT00390000000713 #30 ENSGT00940000154534.a #31 ENSGT00390000011219 #32 ENSGT00940000159590 #33 ENSGT00940000161498 #34 ENSGT00390000013474.b.a #35 ENSGT00940000161315 #36 ENSGT00390000000603 #37 ENSGT00940000157439 Rabbit MODERN SPECIES 10 B4GALNT2 (ENSOCUG00000003531) IGF2BP1 (ENSOCUG00000004411) GIP (ENSOCUG00000004410) #7 SNF8 (ENSOCUG00000009156) #8 UBE2Z (ENSOCUG00000009159) #9 ATP5MC1 (ENSOCUG00000016225) CALCOCO2 (ENSOCUG00000016209) #11 ENSOCUG00000038154 TTLL6 (ENSOCUG00000006289) #12 HOXB13 (ENSOCUG00000012816) #13 HOXB9 (ENSOCUG00000027316) #14 HOXB8 (ENSOCUG00000029186) #15 HOXB5 (ENSOCUG00000023093) #18 HOXB6 (ENSOCUG00000011560) #17 HOXB3 (ENSOCUG00000023337) #21 HOXB2 (ENSOCUG00000024951) #22 HOXB1 (ENSOCUG00000001720) #23 SKAP1 (ENSOCUG00000001717) #24 SNX11 (ENSOCUG00000002309) #25 CBX1 (ENSOCUG00000008021) #27 NFE2L1 (ENSOCUG00000022298) #28 COPZ2 (ENSOCUG00000001802) #29 CDK5RAP3 (ENSOCUG00000012325) #30 PRR15L (ENSOCUG00000017489) #31 PNPO (ENSOCUG00000017484) #32 SP2 (ENSOCUG00000027415) #33 SP6 (ENSOCUG00000023482) #34 SCRN2 (ENSOCUG00000009457) #35 LRRC46 (ENSOCUG00000009453) #36 MRPL10 (ENSOCUG00000009452) #37 OSBPL7 (ENSOCUG00000009447) Pika MODERN SPECIES 3527 ENSOPRG00000000402 HOXB6 (ENSOPRG00000000399) #17 HOXB5 (ENSOPRG00000000394) #18 HOXB3 (ENSOPRG00000000392) #21 HOXB2 (ENSOPRG00000000389) #22