Lepidosauria ANCESTRAL SPECIES 1 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105 #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000162618 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667 #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 ENSGT00390000001362 Episquamata ANCESTRAL SPECIES 6 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105 #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000162618 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667 #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 Toxicofera ANCESTRAL SPECIES 6 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105 #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667 #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 ENSGT00390000001362 Elapidae ANCESTRAL SPECIES 7 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105.z #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667.g #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 ENSGT00390000001362 Indian cobra MODERN SPECIES 1 ENSNNAG00000002980 #7 MRPS27 (ENSNNAG00000002984) #8 ZNF366 (ENSNNAG00000003003) #9 TNPO1 (ENSNNAG00000003034) #10 FCHO2 (ENSNNAG00000003124) #11 TMEM171 (ENSNNAG00000003320) #12 ENSNNAG00000003326 #13 ENSNNAG00000003340 #14 ENSNNAG00000003352 #15 ANKRA2 (ENSNNAG00000003357) #16 UTP15 (ENSNNAG00000003368) #17 ENSNNAG00000003383 #18 ENC1 (ENSNNAG00000003390) #19 HEXB (ENSNNAG00000003401) #20 GFM2 (ENSNNAG00000003664) #21 NSA2 (ENSNNAG00000006166) #22 FAM169A (ENSNNAG00000006185) #23 GCNT4 (ENSNNAG00000006323) #24 HMGCR (ENSNNAG00000006352) #25 CERT1 (ENSNNAG00000006429) #26 POLK (ENSNNAG00000006564) #27 ANKDD1B (ENSNNAG00000006589) #28 ENSNNAG00000006634 #29 SV2C (ENSNNAG00000006660) #30 ENSNNAG00000006703 #31 ENSNNAG00000006718 #32 F2RL2 (ENSNNAG00000006742) #33 IQGAP2 (ENSNNAG00000006766) #34 ENSNNAG00000003737 #35 ENSNNAG00000003747 #36 F2RL1 (ENSNNAG00000003782) #37 Elapidae_a ANCESTRAL SPECIES 9 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105.z #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667.g #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 ENSGT00390000001362 Acanthophiinae ANCESTRAL SPECIES 9 ENSGT00390000007246 #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105.z #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667.g #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 ENSGT00390000001362 Mainland tiger snake MODERN SPECIES 33 PTCD2 (ENSNSUG00000011058) ZNF366 (ENSNSUG00000011054) #9 ENSNSUG00000011053 TNPO1 (ENSNSUG00000011049) #10 FCHO2 (ENSNSUG00000010944) #11 TMEM171 (ENSNSUG00000010943) #12 TMEM174 (ENSNSUG00000010942) #14 ENSNSUG00000010941 ENSNSUG00000010940 #15 ANKRA2 (ENSNSUG00000010939) #16 UTP15 (ENSNSUG00000010848) #17 ARHGEF28 (ENSNSUG00000010843) #18 ENC1 (ENSNSUG00000010842) #19 HEXB (ENSNSUG00000010836) #20 GFM2 (ENSNSUG00000010550) #21 NSA2 (ENSNSUG00000010546) #22 FAM169A (ENSNSUG00000010538) #23 GCNT4 (ENSNSUG00000010536) #24 HMGCR (ENSNSUG00000010526) #25 CERT1 (ENSNSUG00000010520) #26 POLK (ENSNSUG00000010513) #27 ANKDD1B (ENSNSUG00000010511) #28 ENSNSUG00000010508 #29 SV2C (ENSNSUG00000010481) #30 F2RL2 (ENSNSUG00000010480) #33 IQGAP2 (ENSNSUG00000008168) #34 ENSNSUG00000008166 #35 ENSNSUG00000008165 #36 F2RL1 (ENSNSUG00000008164) #37 S100Z (ENSNSUG00000008153) CRHBP (ENSNSUG00000008150) Eastern brown snake MODERN SPECIES 2 PTCD2 (ENSPTXG00000002732) ZNF366 (ENSPTXG00000002730) #9 TNPO1 (ENSPTXG00000002724) #10 FCHO2 (ENSPTXG00000002719) ##11 TMEM171 (ENSPTXG00000002716) #12 TMEM174 (ENSPTXG00000002714) #14 ENSPTXG00000002710 BTF3 (ENSPTXG00000002708) ##15 ANKRA2 (ENSPTXG00000002706) #16 UTP15 (ENSPTXG00000002705) #17 ARHGEF28 (ENSPTXG00000002703) #18 ENSPTXG00000002702 ENC1 (ENSPTXG00000002701) #19 HEXB (ENSPTXG00000002700) #20 GFM2 (ENSPTXG00000002694) #21 NSA2 (ENSPTXG00000002688) #22 FAM169A (ENSPTXG00000002682) #23 GCNT4 (ENSPTXG00000002679) #24 HMGCR (ENSPTXG00000002673) #25 CERT1 (ENSPTXG00000002617) #26 POLK (ENSPTXG00000002608) #27 ANKDD1B (ENSPTXG00000002606) #28 ENSPTXG00000002603 #29 SV2C (ENSPTXG00000002599) #30 F2RL2 (ENSPTXG00000002598) #33 IQGAP2 (ENSPTXG00000002592) #34 ENSPTXG00000002587 #35 ENSPTXG00000002586 #36 F2RL1 (ENSPTXG00000002584) #37 S100Z (ENSPTXG00000002582) CRHBP (ENSPTXG00000002580) Blue-lipped sea krait MODERN SPECIES 957 WARS2 (ENSLLTG00000016125) NSA2 (ENSLLTG00000016127) #22 FAM169A (ENSLLTG00000016129) #23 GCNT4 (ENSLLTG00000016138) #24 Lizard MODERN SPECIES 1 ENSACAG00000044627 TNPO1 (ENSACAG00000009599) #10 FCHO2 (ENSACAG00000009572) #11 TMEM171 (ENSACAG00000009564) #12 TMEM174 (ENSACAG00000009559) #14 ENSACAG00000037329 ENSACAG00000027419 btf3 (ENSACAG00000037897) #15 ANKRA2 (ENSACAG00000009434) #16 UTP15 (ENSACAG00000009351) #17 ENSACAG00000038995 ARHGEF28 (ENSACAG00000009305) #18 ENC1 (ENSACAG00000009297) #19 HEXB (ENSACAG00000009147) #20 GFM2 (ENSACAG00000009011) #21 NSA2 (ENSACAG00000037978) #22 FAM169A (ENSACAG00000008952) #23 GCNT4 (ENSACAG00000008942) #24 ENSACAG00000038096 ENSACAG00000041697 HMGCR (ENSACAG00000008698) #25 CERT1 (ENSACAG00000008556) #26 POLK (ENSACAG00000008458) #27 ANKDD1B (ENSACAG00000008414) #28 ENSACAG00000022708 ENSACAG00000008393 #29 SV2C (ENSACAG00000008315) #30 ENSACAG00000043111 ENSACAG00000035710 ENSACAG00000041042 F2RL2 (ENSACAG00000008312) #33 Laterata ANCESTRAL SPECIES 8 ENSGT00390000007246.e #8 ENSGT00390000009329 ENSGT00940000155498 #9 ENSGT00940000155389 #10 ENSGT00940000157105 #11 ENSGT00390000017024 #12 ENSGT00390000004161 #14 ENSGT00940000157140.b.a.b.b ENSGT00940000153288.a.b.a.b #15 ENSGT00940000157156 #16 ENSGT00390000004228 #17 ENSGT00940000155831 #18 ENSGT00950000182983.B.a.b #19 ENSGT00390000008107.c.a #20 ENSGT00550000074890 #21 ENSGT00390000018706 #22 ENSGT00510000048902.a #23 ENSGT00940000159721 #24 ENSGT00940000162618 ENSGT00940000155305 #25 ENSGT00940000155123.b #26 ENSGT00940000156667 #27 ENSGT00940000154170.A #28 ENSGT00940000164571 #29 ENSGT00950000182940.b.b #30 ENSGT01050000244840.A.b.b #33 ENSGT00950000183076.b #34 ENSGT01050000244840.A.a.b.i #35 ENSGT01050000244840.A.a.b.j #36 ENSGT01050000244840.A.a.a #37 ENSGT00940000161125 Argentine black and white tegu MODERN SPECIES 10 PTCD2 (ENSSMRG00000006292) ZNF366 (ENSSMRG00000006270) #9 TNPO1 (ENSSMRG00000006233) #10 FCHO2 (ENSSMRG00000006209) #11 TMEM171 (ENSSMRG00000006163) #12 TMEM174 (ENSSMRG00000006149) #14 ENSSMRG00000006114 ENSSMRG00000006113 #15 ANKRA2 (ENSSMRG00000006106) #16 UTP15 (ENSSMRG00000006104) #17 ARHGEF28 (ENSSMRG00000006038) #18 ENSSMRG00000006022 ENC1 (ENSSMRG00000005874) #19 HEXB (ENSSMRG00000005873) #20 GFM2 (ENSSMRG00000005872) #21 NSA2 (ENSSMRG00000005871) #22 FAM169A (ENSSMRG00000005843) #23 GCNT4 (ENSSMRG00000005771) #24 ENSSMRG00000005770 HMGCR (ENSSMRG00000004085) #25 CERT1 (ENSSMRG00000004058) #26 POLK (ENSSMRG00000004038) #27 ANKDD1B (ENSSMRG00000004024) #28 ENSSMRG00000004013 #29 SV2C (ENSSMRG00000003152) #30 F2RL2 (ENSSMRG00000003145) #33 IQGAP2 (ENSSMRG00000003117) #34 ENSSMRG00000003045 #35 ENSSMRG00000003039 #36 ENSSMRG00000003030 #36 ENSSMRG00000003024 #36 Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 2 ENSPMRG00000010912 PTCD2 (ENSPMRG00000010904) ZNF366 (ENSPMRG00000010901) #9 TNPO1 (ENSPMRG00000010485) #10 ENSPMRG00000010355 #11 ENSPMRG00000010322 #11 TMEM171 (ENSPMRG00000010301) #12 ENSPMRG00000010296 ENSPMRG00000017709 ##15 ANKRA2 (ENSPMRG00000017697) #16 UTP15 (ENSPMRG00000017591) #17 ARHGEF28 (ENSPMRG00000017245) #18 ENSPMRG00000017193 ENC1 (ENSPMRG00000017190) #19 HEXB (ENSPMRG00000017184) #20 NSA2 (ENSPMRG00000017172) #22 GFM2 (ENSPMRG00000017136) #21 ENSPMRG00000017122 #22 FAM169A (ENSPMRG00000017115) #23 ENSPMRG00000017111 GCNT4 (ENSPMRG00000017109) #24 HMGCR (ENSPMRG00000017104) #25 CERT1 (ENSPMRG00000017088) #26 ENSPMRG00000017083 POLK (ENSPMRG00000017080) #27 ANKDD1B (ENSPMRG00000017071) #28 ENSPMRG00000017062 #29 SV2C (ENSPMRG00000017039) #30 F2RL2 (ENSPMRG00000017024) #33 IQGAP2 (ENSPMRG00000016986) #34 ENSPMRG00000016977 Common wall lizard MODERN SPECIES 13 ENSPMRG00000004082 WDFY4 (ENSPMRG00000004112) LRRC18 (ENSPMRG00000004213) VSTM4 (ENSPMRG00000004221) C10orf71 (ENSPMRG00000004236) DRGX (ENSPMRG00000004248) ERCC6 (ENSPMRG00000004297) CXCL12 (ENSPMRG00000004381) TMEM72 (ENSPMRG00000004388) PAOX (ENSPMRG00000004394) MTG1 (ENSPMRG00000004401) ENSPMRG00000004405 CHUK (ENSPMRG00000004413) ENSPMRG00000004437 COG3 (ENSPMRG00000004446) ENSPMRG00000004694 #22 PDLIM1 (ENSPMRG00000004699) HELLS (ENSPMRG00000004712) ENSPMRG00000004725 BLOC1S2 (ENSPMRG00000004731) ENSPMRG00000004737 PKD2L1 (ENSPMRG00000004742) SCD (ENSPMRG00000004749) WNT8B (ENSPMRG00000000205) NDUFB8 (ENSPMRG00000000239) ENSPMRG00000000259 HIF1AN (ENSPMRG00000000282) PAX2 (ENSPMRG00000000343) CUEDC2 (ENSPMRG00000000422) FBXL15 (ENSPMRG00000000450) ENSPMRG00000000472 Common wall lizard DUPLICATION Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 388 ENSPMRG00000018855 #22 Common wall lizard MODERN SPECIES 2 ZNF366 (ENSPMRG00000010901) #9 TNPO1 (ENSPMRG00000010485) #10 ENSPMRG00000010355 #11 ENSPMRG00000010322 #11 TMEM171 (ENSPMRG00000010301) #12 ENSPMRG00000010296 ENSPMRG00000017709 ##15 ANKRA2 (ENSPMRG00000017697) #16 UTP15 (ENSPMRG00000017591) #17 ARHGEF28 (ENSPMRG00000017245) #18 ENSPMRG00000017193 ENC1 (ENSPMRG00000017190) #19 HEXB (ENSPMRG00000017184) #20 NSA2 (ENSPMRG00000017172) #22 GFM2 (ENSPMRG00000017136) #21 ENSPMRG00000017122 #22 FAM169A (ENSPMRG00000017115) #23 ENSPMRG00000017111 GCNT4 (ENSPMRG00000017109) #24 HMGCR (ENSPMRG00000017104) #25 CERT1 (ENSPMRG00000017088) #26 ENSPMRG00000017083 POLK (ENSPMRG00000017080) #27 ANKDD1B (ENSPMRG00000017071) #28 ENSPMRG00000017062 #29 SV2C (ENSPMRG00000017039) #30 F2RL2 (ENSPMRG00000017024) #33 IQGAP2 (ENSPMRG00000016986) #34 ENSPMRG00000016977 ENSPMRG00000016973 #35 ENSPMRG00000016969 #36 Common wall lizard MODERN SPECIES 401 ENSPMRG00000018902 #22 tuatara MODERN SPECIES 537 ENSSPUG00000018630 BTF3 (ENSSPUG00000000033) ##15 ANKRA2 (ENSSPUG00000000057) #16 UTP15 (ENSSPUG00000000063) #17 ENSSPUG00000000112 #18 ENSSPUG00000000157 #18 ENSSPUG00000000193 ENC1 (ENSSPUG00000000224) #19 HEXB (ENSSPUG00000000285) #20 GFM2 (ENSSPUG00000000593) #21 NSA2 (ENSSPUG00000000619) #22 FAM169A (ENSSPUG00000000635) #23