Gnathostomata	ANCESTRAL SPECIES	71																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821 #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Euteleostomi	ANCESTRAL SPECIES	24																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000155876 #35	ENSGT00940000164995	ENSGT00640000091523 #36
Sarcopterygii	ANCESTRAL SPECIES	81	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154396.a	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154396.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000164995
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000164995
Mammalia	ANCESTRAL SPECIES	24	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Theria	ANCESTRAL SPECIES	30	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000164995
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000164995
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Glires	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Murinae	ANCESTRAL SPECIES		ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Mus	ANCESTRAL SPECIES		ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00520000061590	ENSGT00940000155460 #28	ENSGT00900000143396 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00520000061590	ENSGT00940000155460 #28	ENSGT00900000143396 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Ryukyu mouse	MODERN SPECIES	10	Ranbp6 (MGP_CAROLIEiJ_G0022864) #7	9930021J03Rik (MGP_CAROLIEiJ_G0022863) #8	Mlana (MGP_CAROLIEiJ_G0022862) #9	Ermp1 (MGP_CAROLIEiJ_G0022861) #10	Ric1 (MGP_CAROLIEiJ_G0022860) #11	Pdcd1lg2 (MGP_CAROLIEiJ_G0022859) #12	Cd274 (MGP_CAROLIEiJ_G0022858) #13	Plgrkt (MGP_CAROLIEiJ_G0022857) #14	Rln1 (MGP_CAROLIEiJ_G0022856) #15	Insl6 (MGP_CAROLIEiJ_G0022855) #16	Jak2 (MGP_CAROLIEiJ_G0022854) #17	Rcl1 (MGP_CAROLIEiJ_G0022853) #18	Ak3 (MGP_CAROLIEiJ_G0022852) #19	Cdc37l1 (MGP_CAROLIEiJ_G0022851) #20	Plpp6 (MGP_CAROLIEiJ_G0022850) #21	Spata6l (MGP_CAROLIEiJ_G0022849) #22	Slc1a1 (MGP_CAROLIEiJ_G0022848) #23	Glis3 (MGP_CAROLIEiJ_G0022847) #24	Rfx3 (MGP_CAROLIEiJ_G0022846) #25	Pum3 (MGP_CAROLIEiJ_G0022845) #26	Kcnv2 (MGP_CAROLIEiJ_G0022844) #27	Vldlr (MGP_CAROLIEiJ_G0022843) #28	MGP_CAROLIEiJ_G0022842 #29	Smarca2 (MGP_CAROLIEiJ_G0022841) #30	Dmrt2 (MGP_CAROLIEiJ_G0022840) #31	Dmrt3 (MGP_CAROLIEiJ_G0022839) #32	Dmrt1 (MGP_CAROLIEiJ_G0022838) #33	Kank1 (MGP_CAROLIEiJ_G0022837) #34	Dock8 (MGP_CAROLIEiJ_G0022836) #35	Cbwd1 (MGP_CAROLIEiJ_G0022835) #36	Foxd4 (MGP_CAROLIEiJ_G0022834) #37
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00520000061590	ENSGT00940000155460 #28	ENSGT00900000143396 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Mouse	MODERN SPECIES	10	Ranbp6 (ENSMUSG00000074909) #7	9930021J03Rik (ENSMUSG00000046138) #8	Mlana (ENSMUSG00000024806) #9	Ermp1 (ENSMUSG00000046324) #10	Ric1 (ENSMUSG00000038658) #11	Pdcd1lg2 (ENSMUSG00000016498) #12	Cd274 (ENSMUSG00000016496) #13	Plgrkt (ENSMUSG00000016495) #14	Rln1 (ENSMUSG00000039097) #15	Insl6 (ENSMUSG00000050957) #16	Jak2 (ENSMUSG00000024789) #17	Rcl1 (ENSMUSG00000024785) #18	Ak3 (ENSMUSG00000024782) #19	Cdc37l1 (ENSMUSG00000024780) #20	Plpp6 (ENSMUSG00000040105) #21	Spata6l (ENSMUSG00000064202) #22	Slc1a1 (ENSMUSG00000024935) #23	Glis3 (ENSMUSG00000052942) #24	Rfx3 (ENSMUSG00000040929) #25	Pum3 (ENSMUSG00000041360) #26	Kcnv2 (ENSMUSG00000047298) #27	Vldlr (ENSMUSG00000024924) #28	Gm815 (ENSMUSG00000074913) #29	Smarca2 (ENSMUSG00000024921) #30	Dmrt2 (ENSMUSG00000048138) #31	Dmrt3 (ENSMUSG00000042372) #32	Dmrt1 (ENSMUSG00000024837) #33	Kank1 (ENSMUSG00000032702) #34	Dock8 (ENSMUSG00000052085) #35	Cbwd1 (ENSMUSG00000024878) #36	Foxd4 (ENSMUSG00000051490) #37
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00520000061590	ENSGT00940000155460 #28	ENSGT00900000143396 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
spretus	MODERN SPECIES	10	Ranbp6 (MGP_SPRETEiJ_G0023782) #7	9930021J03Rik (MGP_SPRETEiJ_G0023781) #8	Mlana (MGP_SPRETEiJ_G0023780) #9	Ermp1 (MGP_SPRETEiJ_G0023779) #10	Ric1 (MGP_SPRETEiJ_G0023778) #11	Pdcd1lg2 (MGP_SPRETEiJ_G0023777) #12	Cd274 (MGP_SPRETEiJ_G0023776) #13	Plgrkt (MGP_SPRETEiJ_G0023775) #14	Rln1 (MGP_SPRETEiJ_G0023774) #15	Insl6 (MGP_SPRETEiJ_G0023773) #16	Jak2 (MGP_SPRETEiJ_G0023772) #17	Rcl1 (MGP_SPRETEiJ_G0023771) #18	Ak3 (MGP_SPRETEiJ_G0023770) #19	Cdc37l1 (MGP_SPRETEiJ_G0023769) #20	Plpp6 (MGP_SPRETEiJ_G0023768) #21	Spata6l (MGP_SPRETEiJ_G0023767) #22	Slc1a1 (MGP_SPRETEiJ_G0023766) #23	Glis3 (MGP_SPRETEiJ_G0023765) #24	Rfx3 (MGP_SPRETEiJ_G0023764) #25	Pum3 (MGP_SPRETEiJ_G0023763) #26	Kcnv2 (MGP_SPRETEiJ_G0023762) #27	Vldlr (MGP_SPRETEiJ_G0023761) #28	MGP_SPRETEiJ_G0023760 #29	Smarca2 (MGP_SPRETEiJ_G0023759) #30	Dmrt2 (MGP_SPRETEiJ_G0023758) #31	Dmrt3 (MGP_SPRETEiJ_G0023757) #32	Kank1 (MGP_SPRETEiJ_G0023756) #34	Dock8 (MGP_SPRETEiJ_G0023755) #35	Cbwd1 (MGP_SPRETEiJ_G0023754) #36	Foxd4 (MGP_SPRETEiJ_G0023753) #37	Pgm5 (MGP_SPRETEiJ_G0023752)
Steppe mouse	MODERN SPECIES	3342	9930021J03Rik (ENSMSIG00000025540) #8	Mlana (ENSMSIG00000025512) #9	Ermp1 (ENSMSIG00000025448) #10	Ric1 (ENSMSIG00000025350) #11	Pdcd1lg2 (ENSMSIG00000025335) #12	Cd274 (ENSMSIG00000025326) #13	Plgrkt (ENSMSIG00000025313) #14	Rln1 (ENSMSIG00000025309) #15	Insl6 (ENSMSIG00000025305) #16	Jak2 (ENSMSIG00000025287) #17	Rcl1 (ENSMSIG00000025273) #18	Ak3 (ENSMSIG00000025266) #19	ENSMSIG00000025242	Cdc37l1 (ENSMSIG00000025086) #20	Plpp6 (ENSMSIG00000025080) #21	Spata6l (ENSMSIG00000024987) #22	ENSMSIG00000024973	Slc1a1 (ENSMSIG00000024962) #23
Shrew mouse	MODERN SPECIES		Ranbp6 (MGP_PahariEiJ_G0014357) #7	9930021J03Rik (MGP_PahariEiJ_G0014356) #8	Mlana (MGP_PahariEiJ_G0014355) #9	Ermp1 (MGP_PahariEiJ_G0014354) #10	Ric1 (MGP_PahariEiJ_G0014353) #11	Pdcd1lg2 (MGP_PahariEiJ_G0014352) #12	Cd274 (MGP_PahariEiJ_G0014351) #13	MGP_PahariEiJ_G0014350	Rln1 (MGP_PahariEiJ_G0014349) #15	Insl6 (MGP_PahariEiJ_G0014348) #16	Jak2 (MGP_PahariEiJ_G0014347) #17	Rcl1 (MGP_PahariEiJ_G0014346) #18	Ak3 (MGP_PahariEiJ_G0014345) #19	Cdc37l1 (MGP_PahariEiJ_G0014344) #20	Plpp6 (MGP_PahariEiJ_G0014343) #21	Spata6l (MGP_PahariEiJ_G0014342) #22	Slc1a1 (MGP_PahariEiJ_G0014341) #23	Glis3 (MGP_PahariEiJ_G0014340) #24	Rfx3 (MGP_PahariEiJ_G0014339) #25	Pum3 (MGP_PahariEiJ_G0014338) #26	Kcnv2 (MGP_PahariEiJ_G0014337) #27	Vldlr (MGP_PahariEiJ_G0014336) #28	MGP_PahariEiJ_G0014335 #29	Smarca2 (MGP_PahariEiJ_G0014334) #30	Dmrt2 (MGP_PahariEiJ_G0014333) #31	Dmrt3 (MGP_PahariEiJ_G0014332) #32	Dmrt1 (MGP_PahariEiJ_G0014331) #33	Kank1 (MGP_PahariEiJ_G0014330) #34	Dock8 (MGP_PahariEiJ_G0014329) #35	Cbwd1 (MGP_PahariEiJ_G0014328) #36	Foxd4 (MGP_PahariEiJ_G0014327) #37
Rat	MODERN SPECIES		RGD1311595 (ENSRNOG00000026942) #8	Mlana (ENSRNOG00000036608) #9	Ermp1 (ENSRNOG00000010915) #10	Ric1 (ENSRNOG00000016172) #11	Pdcd1lg2 (ENSRNOG00000016136) #12	Cd274 (ENSRNOG00000016112) #13	Plgrkt (ENSRNOG00000015932) #14	Rln1 (ENSRNOG00000060867) #15	Insl6 (ENSRNOG00000015868) #16	Jak2 (ENSRNOG00000059968) #17	Rcl1 (ENSRNOG00000015491) #18	Ak3 (ENSRNOG00000052506) #19	Cdc37l1 (ENSRNOG00000010967) #20	RGD1565057 (ENSRNOG00000069618)	Plpp6 (ENSRNOG00000015268) #21	Spata6l (ENSRNOG00000015137) #22	ENSRNOG00000065811	Slc1a1 (ENSRNOG00000014816) #23	Glis3 (ENSRNOG00000014768) #24	ENSRNOG00000066761	Rfx3 (ENSRNOG00000014486) #25	Pum3 (ENSRNOG00000012574) #26	Kcnv2 (ENSRNOG00000012566) #27	ENSRNOG00000062591	Vldlr (ENSRNOG00000027491) #28	ENSRNOG00000069446	Smarca2 (ENSRNOG00000011931) #30	ENSRNOG00000062555	Dmrt2 (ENSRNOG00000016301) #31	Dmrt3 (ENSRNOG00000016284) #32	Dmrt1 (ENSRNOG00000016075) #33
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000010025	Ranbp6 (ENSMAUG00000002166) #7	9930021J03Rik (ENSMAUG00000009640) #8	Mlana (ENSMAUG00000006750) #9	Ermp1 (ENSMAUG00000008682) #10	Ric1 (ENSMAUG00000008752) #11	Pdcd1lg2 (ENSMAUG00000007055) #12	Cd274 (ENSMAUG00000008788) #13	Plgrkt (ENSMAUG00000007601) #14	Rln1 (ENSMAUG00000008598) #15	Insl6 (ENSMAUG00000008553) #16	Jak2 (ENSMAUG00000008571) #17	Rcl1 (ENSMAUG00000008922) #18	Ak3 (ENSMAUG00000008253) #19	Cdc37l1 (ENSMAUG00000008847) #20	Spata6l (ENSMAUG00000010530) #22	Plpp6 (ENSMAUG00000001915) #21	Slc1a1 (ENSMAUG00000009046) #23	Rfx3 (ENSMAUG00000009987) #25	Pum3 (ENSMAUG00000009733) #26	Kcnv2 (ENSMAUG00000008727) #27	ENSMAUG00000008768	ENSMAUG00000008613 #30	ENSMAUG00000008807 #30	ENSMAUG00000010070 #30	Dmrt2 (ENSMAUG00000010038) #31	Dmrt3 (ENSMAUG00000008904) #32	ENSMAUG00000008975 #33	Kank1 (ENSMAUG00000009263) #34	ENSMAUG00000009191 #35	ENSMAUG00000009538 #35
Chinese hamster chok1gshd	MODERN SPECIES	401	Ranbp6 (ENSCGRG00001012447) #7	9930021J03Rik (ENSCGRG00001008137) #8	Mlana (ENSCGRG00001024579) #9	Ermp1 (ENSCGRG00001021468) #10	Ric1 (ENSCGRG00001016728) #11	Pdcd1lg2 (ENSCGRG00001015183) #12	ENSCGRG00001013276	Cd274 (ENSCGRG00001024294) #13	Plgrkt (ENSCGRG00001023695) #14	Insl6 (ENSCGRG00001020673) #16	Jak2 (ENSCGRG00001015840) #17	Rcl1 (ENSCGRG00001013748) #18	AK3 (ENSCGRG00001007296) #19	Cdc37l1 (ENSCGRG00001000264) #20	Plpp6 (ENSCGRG00001012981) #21	Spata6l (ENSCGRG00001002881) #22	ENSCGRG00001023585	Slc1a1 (ENSCGRG00001022336) #23	Glis3 (ENSCGRG00001014233) #24	Rfx3 (ENSCGRG00001021745) #25	Pum3 (ENSCGRG00001016402) #26	Kcnv2 (ENSCGRG00001018140) #27	ENSCGRG00001017895	Vldlr (ENSCGRG00001014399) #28	Smarca2 (ENSCGRG00001002323) #30	Dmrt2 (ENSCGRG00001007562) #31	Dmrt3 (ENSCGRG00001005036) #32	Dmrt1 (ENSCGRG00001000625) #33	Kank1 (ENSCGRG00001020355) #34	Dock8 (ENSCGRG00001013079) #35	Cbwd1 (ENSCGRG00001020851) #36
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Northern American deer mouse	MODERN SPECIES		Ranbp6 (ENSPEMG00000013745) #7	9930021J03Rik (ENSPEMG00000008620) #8	Mlana (ENSPEMG00000004309) #9	Ermp1 (ENSPEMG00000022988) #10	Ric1 (ENSPEMG00000022073) #11	Pdcd1lg2 (ENSPEMG00000021972) #12	Cd274 (ENSPEMG00000022427) #13	Plgrkt (ENSPEMG00000022507) #14	Rln1 (ENSPEMG00000022594) #15	ENSPEMG00000023396 #16	Jak2 (ENSPEMG00000022083) #17	Rcl1 (ENSPEMG00000023275) #18	Ak3 (ENSPEMG00000022781) #19	Cdc37l1 (ENSPEMG00000000344) #20	Plpp6 (ENSPEMG00000007181) #21	Spata6l (ENSPEMG00000023122) #22	ENSPEMG00000021571	Slc1a1 (ENSPEMG00000009611) #23	ENSPEMG00000004286	Glis3 (ENSPEMG00000020002) #24	Rfx3 (ENSPEMG00000019731) #25	ENSPEMG00000019340 #26	ENSPEMG00000030423	Kcnv2 (ENSPEMG00000020138) #27	Vldlr (ENSPEMG00000022250) #28	ENSPEMG00000021666	Smarca2 (ENSPEMG00000019821) #30	Dmrt2 (ENSPEMG00000019767) #31	Dmrt3 (ENSPEMG00000019990) #32	Dmrt1 (ENSPEMG00000019943) #33	Kank1 (ENSPEMG00000013916) #34
Prairie vole	MODERN SPECIES	16	Ranbp6 (ENSMOCG00000010374) #7	9930021J03Rik (ENSMOCG00000020946) #8	Mlana (ENSMOCG00000005161) #9	ENSMOCG00000019292 #10	Ric1 (ENSMOCG00000018339) #11	Pdcd1lg2 (ENSMOCG00000002927) #12	Cd274 (ENSMOCG00000016738) #13	Plgrkt (ENSMOCG00000013870) #14	Rln1 (ENSMOCG00000012108) #15	Insl6 (ENSMOCG00000015208) #16	Jak2 (ENSMOCG00000013580) #17	Rcl1 (ENSMOCG00000012145) #18	Ak3 (ENSMOCG00000010856) #19	Cdc37l1 (ENSMOCG00000018341) #20	Plpp6 (ENSMOCG00000001135) #21	Spata6l (ENSMOCG00000022082) #22	ENSMOCG00000018225	Slc1a1 (ENSMOCG00000017507) #23	Glis3 (ENSMOCG00000009953) #24	Rfx3 (ENSMOCG00000018931) #25	ENSMOCG00000019519 #26	Kcnv2 (ENSMOCG00000014872) #27	Vldlr (ENSMOCG00000004269) #28	Smarca2 (ENSMOCG00000001611) #30	Dmrt2 (ENSMOCG00000016701) #31	Dmrt3 (ENSMOCG00000015270) #32	ENSMOCG00000017971 #33	Kank1 (ENSMOCG00000020725) #34	Dock8 (ENSMOCG00000014249) #35	Cbwd1 (ENSMOCG00000015974) #36	Pgm5 (ENSMOCG00000011710)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166												Jak2 (ENSNGAG00000000096) #17	Rcl1 (ENSNGAG00000015327) #18	Ak3 (ENSNGAG00000016647) #19	Cdc37l1 (ENSNGAG00000018155) #20	Spata6l (ENSNGAG00000017948) #22	Plpp6 (ENSNGAG00000014756) #21	Slc1a1 (ENSNGAG00000014723) #23	ENSNGAG00000018137	Glis3 (ENSNGAG00000006111) #24	Rfx3 (ENSNGAG00000016470) #25	Pum3 (ENSNGAG00000019468) #26	Kcnv2 (ENSNGAG00000020439) #27	Vldlr (ENSNGAG00000003966) #28	ENSNGAG00000012912	Smarca2 (ENSNGAG00000000108) #30	ENSNGAG00000013866	Dmrt2 (ENSNGAG00000020041) #31	Dmrt3 (ENSNGAG00000020423) #32	Dmrt1 (ENSNGAG00000001295) #33
Lesser Egyptian jerboa	MODERN SPECIES	50	Gldc (ENSJJAG00000023082)	Uhrf2 (ENSJJAG00000023371)	ENSJJAG00000006290	Ranbp6 (ENSJJAG00000010492) #7	9930021J03Rik (ENSJJAG00000016877) #8	Mlana (ENSJJAG00000022272) #9	Ermp1 (ENSJJAG00000021848) #10	Ric1 (ENSJJAG00000014841) #11	Plgrkt (ENSJJAG00000010846) #14	Rln1 (ENSJJAG00000013838) #15	Jak2 (ENSJJAG00000012271) #17	ENSJJAG00000022803 #18	Ak3 (ENSJJAG00000023388) #19	Cdc37l1 (ENSJJAG00000024330) #20	Plpp6 (ENSJJAG00000011277) #21	Spata6l (ENSJJAG00000022941) #22	ENSJJAG00000020462	Slc1a1 (ENSJJAG00000018507) #23	Glis3 (ENSJJAG00000011399) #24	ENSJJAG00000024335	Rfx3 (ENSJJAG00000010280) #25	ENSJJAG00000010263	Pum3 (ENSJJAG00000012563) #26	Kcnv2 (ENSJJAG00000016782) #27	ENSJJAG00000000409	Vldlr (ENSJJAG00000016440) #28	Smarca2 (ENSJJAG00000010867) #30	ENSJJAG00000010719	Dmrt2 (ENSJJAG00000023959) #31	Dmrt3 (ENSJJAG00000022573) #32	Dmrt1 (ENSJJAG00000016690) #33
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00390000005185	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a.c.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000048843	ENSHGLG00000016359	IL33 (ENSHGLG00000017894)	RANBP6 (ENSHGLG00000021232) #7	KIAA2026 (ENSHGLG00000018909) #8	ENSHGLG00000034164 #9	ERMP1 (ENSHGLG00000018719) #10	RIC1 (ENSHGLG00000011155) #11	CD274 (ENSHGLG00000016786) #13	PLGRKT (ENSHGLG00000037089) #14	ENSHGLG00000019539 #15	JAK2 (ENSHGLG00000011890) #17	ENSHGLG00000016452 #18	ENSHGLG00000018975 #19	CDC37L1 (ENSHGLG00000012329) #20	SPATA6L (ENSHGLG00000018477) #22	PLPP6 (ENSHGLG00000038858) #21	SLC1A1 (ENSHGLG00000015155) #23	ENSHGLG00000017534	ENSHGLG00000032696	ENSHGLG00000015091 #24	ENSHGLG00000018913 #25	ENSHGLG00000019207	ENSHGLG00000042585	ENSHGLG00000016314	ENSHGLG00000015868 #26	KCNV2 (ENSHGLG00000015810) #27	VLDLR (ENSHGLG00000016113) #28	ENSHGLG00000016566	ENSHGLG00000035043	ENSHGLG00000005215 #30
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00390000005185	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a.c.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b.d #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Guinea pig	MODERN SPECIES	21	IL33 (ENSCPOG00000030316)	RANBP6 (ENSCPOG00000005398) #7	KIAA2026 (ENSCPOG00000013437) #8	ENSCPOG00000039570	MLANA (ENSCPOG00000013436) #9	ERMP1 (ENSCPOG00000013432) #10	RIC1 (ENSCPOG00000013425) #11	CD274 (ENSCPOG00000004371) #13	PLGRKT (ENSCPOG00000012720) #14	ENSCPOG00000001365 #15	INSL6 (ENSCPOG00000002694) #16	JAK2 (ENSCPOG00000014653) #17	RCL1 (ENSCPOG00000015354) #18	AK3 (ENSCPOG00000011927) #19	CDC37L1 (ENSCPOG00000030938) #20	SPATA6L (ENSCPOG00000012925) #22	PLPP6 (ENSCPOG00000012931) #21	SLC1A1 (ENSCPOG00000011151) #23	ENSCPOG00000030794	GLIS3 (ENSCPOG00000005523) #24	RFX3 (ENSCPOG00000000900) #25	ENSCPOG00000008552 #26	KCNV2 (ENSCPOG00000032893) #27	VLDLR (ENSCPOG00000007685) #28	SMARCA2 (ENSCPOG00000005475) #30	DMRT2 (ENSCPOG00000008452) #31	DMRT3 (ENSCPOG00000005912) #32	DMRT1 (ENSCPOG00000005909) #33	KANK1 (ENSCPOG00000008389) #34	DOCK8 (ENSCPOG00000008366) #35	ENSCPOG00000019718 #36
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a.c.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b.d #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Degu	MODERN SPECIES	128	RANBP6 (ENSODEG00000019173) #7	ENSODEG00000019201	KIAA2026 (ENSODEG00000005381) #8	MLANA (ENSODEG00000005368) #9	ERMP1 (ENSODEG00000005254) #10	RIC1 (ENSODEG00000004340) #11	CD274 (ENSODEG00000004298) #13	PLGRKT (ENSODEG00000004267) #14	INSL6 (ENSODEG00000004231) #16	ENSODEG00000004220	JAK2 (ENSODEG00000004208) #17	RCL1 (ENSODEG00000004151) #18	ENSODEG00000004121 #19	CDC37L1 (ENSODEG00000004185) #20	PLPP6 (ENSODEG00000019026) #21	SPATA6L (ENSODEG00000004066) #22	ENSODEG00000003949	SLC1A1 (ENSODEG00000003884) #23	GLIS3 (ENSODEG00000003731) #24	RFX3 (ENSODEG00000003682) #25	ENSODEG00000003625 #26	KCNV2 (ENSODEG00000003536) #27	ENSODEG00000003492 #28	ENSODEG00000006378	SMARCA2 (ENSODEG00000005452) #30	DMRT2 (ENSODEG00000004992) #31	DMRT3 (ENSODEG00000004984) #32	DMRT1 (ENSODEG00000004898) #33	KANK1 (ENSODEG00000004766) #34	ENSODEG00000004719	ENSODEG00000004711 #35
Long-tailed chinchilla	MODERN SPECIES	141	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716) #7	KIAA2026 (ENSCLAG00000010624) #8	MLANA (ENSCLAG00000005918) #9	ERMP1 (ENSCLAG00000004784) #10	RIC1 (ENSCLAG00000008085) #11	ENSCLAG00000007197	CD274 (ENSCLAG00000006370) #13	PLGRKT (ENSCLAG00000008570) #14	INSL6 (ENSCLAG00000007423) #16	JAK2 (ENSCLAG00000005091) #17	RCL1 (ENSCLAG00000007445) #18	AK3 (ENSCLAG00000006329) #19	CDC37L1 (ENSCLAG00000005805) #20	PLPP6 (ENSCLAG00000017735) #21	SPATA6L (ENSCLAG00000010497) #22	ENSCLAG00000009476	SLC1A1 (ENSCLAG00000009832) #23	ENSCLAG00000009238	GLIS3 (ENSCLAG00000008116) #24	RFX3 (ENSCLAG00000009044) #25	PUM3 (ENSCLAG00000011892) #26	KCNV2 (ENSCLAG00000013226) #27	VLDLR (ENSCLAG00000007543) #28	SMARCA2 (ENSCLAG00000014484) #30	DMRT2 (ENSCLAG00000006168) #31	DMRT3 (ENSCLAG00000015537) #32	DMRT1 (ENSCLAG00000015238) #33	KANK1 (ENSCLAG00000015509) #34	DOCK8 (ENSCLAG00000005204) #35	ENSCLAG00000005076 #36
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839.k #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Marmotini_b	ANCESTRAL SPECIES	88										ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489.n #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Squirrel	MODERN SPECIES	103											ENSSTOG00000016298 #16	JAK2 (ENSSTOG00000006679) #17	RCL1 (ENSSTOG00000000023) #18	AK3 (ENSSTOG00000000021) #19	CDC37L1 (ENSSTOG00000000020) #20	SPATA6L (ENSSTOG00000000018) #22	PLPP6 (ENSSTOG00000025831) #21	SLC1A1 (ENSSTOG00000023583) #23	ENSSTOG00000031708	GLIS3 (ENSSTOG00000000302) #24	RFX3 (ENSSTOG00000006974) #25	PUM3 (ENSSTOG00000009586) #26	KCNV2 (ENSSTOG00000020003) #27	VLDLR (ENSSTOG00000006880) #28	ENSSTOG00000031987	SMARCA2 (ENSSTOG00000006812) #30	DMRT2 (ENSSTOG00000026909) #31	DMRT3 (ENSSTOG00000023574) #32	DMRT1 (ENSSTOG00000010235) #33	KANK1 (ENSSTOG00000010218) #34	ENSSTOG00000030036
Arctic ground squirrel	MODERN SPECIES	615													RCL1 (ENSUPAG00010002682) #18	ENSUPAG00010002695	AK3 (ENSUPAG00010002720) #19	SPATA6L (ENSUPAG00010002744) #22	PLPP6 (ENSUPAG00010002808) #21	ENSUPAG00010002812	SLC1A1 (ENSUPAG00010002817) #23	ENSUPAG00010002843	ENSUPAG00010002859	ENSUPAG00010002867
Alpin marmot	MODERN SPECIES	32	ENSMMMG00000002003 #10	ENSMMMG00000002013 #10	RIC1 (ENSMMMG00000002031) #11	PDCD1LG2 (ENSMMMG00000002085) #12	CD274 (ENSMMMG00000002100) #13	PLGRKT (ENSMMMG00000002117) #14	ENSMMMG00000002130 #15	ENSMMMG00000002146	ENSMMMG00000002157	ENSMMMG00000002165 #16	JAK2 (ENSMMMG00000002174) #17	RCL1 (ENSMMMG00000002259) #18	AK3 (ENSMMMG00000002286) #19	CDC37L1 (ENSMMMG00000002322) #20	PLPP6 (ENSMMMG00000002356) #21	SPATA6L (ENSMMMG00000002361) #22	SLC1A1 (ENSMMMG00000002380) #23	ENSMMMG00000002405	ENSMMMG00000002416	GLIS3 (ENSMMMG00000002430) #24	ENSMMMG00000002504	PUM3 (ENSMMMG00000002513) #26	KCNV2 (ENSMMMG00000002550) #27	ENSMMMG00000002572	VLDLR (ENSMMMG00000002594) #28	ENSMMMG00000002765	ENSMMMG00000002785	SMARCA2 (ENSMMMG00000002811) #30	ENSMMMG00000003212	DMRT2 (ENSMMMG00000003238) #31	DMRT3 (ENSMMMG00000003239) #32
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005025173	KIAA2026 (ENSSVLG00005025155) #8	MLANA (ENSSVLG00005025137) #9	ERMP1 (ENSSVLG00005025117) #10	RIC1 (ENSSVLG00005025040) #11	PDCD1LG2 (ENSSVLG00005024955) #12	CD274 (ENSSVLG00005024930) #13	PLGRKT (ENSSVLG00005024908) #14	ENSSVLG00005024871	INSL6 (ENSSVLG00005024849) #16	JAK2 (ENSSVLG00005024808) #17	RCL1 (ENSSVLG00005024752) #18	ENSSVLG00005024721 #19	CDC37L1 (ENSSVLG00005024699) #20	PLPP6 (ENSSVLG00005024689) #21	SPATA6L (ENSSVLG00005024615) #22	SLC1A1 (ENSSVLG00005024569) #23	GLIS3 (ENSSVLG00005024543) #24	RFX3 (ENSSVLG00005024420) #25	ENSSVLG00005024401	PUM3 (ENSSVLG00005024338) #26	KCNV2 (ENSSVLG00005024318) #27	VLDLR (ENSSVLG00005024232) #28	ENSSVLG00005024201	SMARCA2 (ENSSVLG00005024009) #30	DMRT2 (ENSSVLG00005023918) #31	DMRT3 (ENSSVLG00005023888) #32	DMRT1 (ENSSVLG00005023845) #33	KANK1 (ENSSVLG00005023807) #34	DOCK8 (ENSSVLG00005023344) #35	ENSSVLG00005023280
Lagomorpha	ANCESTRAL SPECIES	68	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000183016.E.b.b	ENSGT01050000244818	ENSGT00940000153064.b.d	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25
Rabbit	MODERN SPECIES		CD274 (ENSOCUG00000008117) #13	PLGRKT (ENSOCUG00000008095) #14	ENSOCUG00000025640 #15	ENSOCUG00000030357	ENSOCUG00000038359	ENSOCUG00000030169	ENSOCUG00000037426	ENSOCUG00000031086	INSL6 (ENSOCUG00000013682) #16	ENSOCUG00000037721	JAK2 (ENSOCUG00000016853) #17	RCL1 (ENSOCUG00000008161) #18	ENSOCUG00000013279	ENSOCUG00000011411 #19	CDC37L1 (ENSOCUG00000003468) #20	SPATA6L (ENSOCUG00000003455) #22	PLPP6 (ENSOCUG00000003465) #21	ENSOCUG00000022202 #23	ENSOCUG00000026987	ENSOCUG00000013264 #23	ENSOCUG00000036407	GLIS3 (ENSOCUG00000023004) #24	ENSOCUG00000027590	ENSOCUG00000023393	RFX3 (ENSOCUG00000014086) #25	ENSOCUG00000039572	ENSOCUG00000004189 #26	KCNV2 (ENSOCUG00000004385) #27	VLDLR (ENSOCUG00000002231) #28	ENSOCUG00000022775	SMARCA2 (ENSOCUG00000006320) #30
Pika	MODERN SPECIES	4916												RCL1 (ENSOPRG00000010965) #18	AK3 (ENSOPRG00000010954) #19	CDC37L1 (ENSOPRG00000010942) #20	ENSOPRG00000010928	SPATA6L (ENSOPRG00000010908) #22	SLC1A1 (ENSOPRG00000010884) #23
Tree shrew	MODERN SPECIES	183														AK3 (ENSTBEG00000008054) #19	CDC37L1 (ENSTBEG00000007827) #20	ENSTBEG00000006755 #22
Primates	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750	ENSGT00640000091523 #36
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Gorilla	MODERN SPECIES	22	MLANA (ENSGGOG00000016251) #9	ERMP1 (ENSGGOG00000001865) #10	RIC1 (ENSGGOG00000004550) #11	PDCD1LG2 (ENSGGOG00000001681) #12	CD274 (ENSGGOG00000008540) #13	PLGRKT (ENSGGOG00000004113) #14	RLN1 (ENSGGOG00000005891) #15	RLN2 (ENSGGOG00000026430) #15	INSL4 (ENSGGOG00000036799) ##15	INSL6 (ENSGGOG00000008771) #16	JAK2 (ENSGGOG00000007243) #17	ENSGGOG00000022573	RCL1 (ENSGGOG00000015041) #18	AK3 (ENSGGOG00000028122) #19	CDC37L1 (ENSGGOG00000006889) #20	SPATA6L (ENSGGOG00000034964) #22	PLPP6 (ENSGGOG00000040149) #21	SLC1A1 (ENSGGOG00000000262) #23	GLIS3 (ENSGGOG00000038970) #24	RFX3 (ENSGGOG00000003805) #25	ENSGGOG00000022372	PUM3 (ENSGGOG00000006143) #26	KCNV2 (ENSGGOG00000000231) #27	VLDLR (ENSGGOG00000001362) #28	ENSGGOG00000038609	SMARCA2 (ENSGGOG00000000513) #30	ENSGGOG00000039224	DMRT2 (ENSGGOG00000025101) #31	DMRT3 (ENSGGOG00000013303) #32	DMRT1 (ENSGGOG00000013298) #33	KANK1 (ENSGGOG00000005466) #34
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Human	MODERN SPECIES	21	KIAA2026 (ENSG00000183354) #8	ERMP1 (ENSG00000099219) #10	RIC1 (ENSG00000107036) #11	PDCD1LG2 (ENSG00000197646) #12	CD274 (ENSG00000120217) #13	PLGRKT (ENSG00000107020) #14	RLN1 (ENSG00000107018) #15	RLN2 (ENSG00000107014) #15	INSL4 (ENSG00000120211) ##15	INSL6 (ENSG00000120210) #16	JAK2 (ENSG00000096968) #17	RCL1 (ENSG00000120158) #18	AK3 (ENSG00000147853) #19	CDC37L1 (ENSG00000106993) #20	PLPP6 (ENSG00000205808) #21	SPATA6L (ENSG00000106686) #22	SLC1A1 (ENSG00000106688) #23	GLIS3 (ENSG00000107249) #24	RFX3 (ENSG00000080298) #25	PUM3 (ENSG00000080608) #26	KCNV2 (ENSG00000168263) #27	VLDLR (ENSG00000147852) #28	SMARCA2 (ENSG00000080503) #30	DMRT2 (ENSG00000173253) #31	DMRT3 (ENSG00000064218) #32	DMRT1 (ENSG00000137090) #33	KANK1 (ENSG00000107104) #34	DOCK8 (ENSG00000107099) #35	ZNG1A (ENSG00000172785)	FOXD4 (ENSG00000170122) #37	WASHC1 (ENSG00000181404)
Pan	ANCESTRAL SPECIES	26	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.f #15	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Chimpanzee	MODERN SPECIES	22	RIC1 (ENSPTRG00000020757) #11	PDCD1LG2 (ENSPTRG00000020756) #12	CD274 (ENSPTRG00000020755) #13	ENSPTRG00000046654	PLGRKT (ENSPTRG00000020753) #14	RLN1 (ENSPTRG00000050353) #15	RLN2 (ENSPTRG00000045482) #15	INSL4 (ENSPTRG00000020750) ##15	INSL6 (ENSPTRG00000020748) #16	ENSPTRG00000052532	JAK2 (ENSPTRG00000020744) #17	RCL1 (ENSPTRG00000020743) #18	AK3 (ENSPTRG00000020742) #19	CDC37L1 (ENSPTRG00000020741) #20	PLPP6 (ENSPTRG00000044921) #21	SPATA6L (ENSPTRG00000020740) #22	SLC1A1 (ENSPTRG00000020739) #23	GLIS3 (ENSPTRG00000020738) #24	ENSPTRG00000050873	RFX3 (ENSPTRG00000048670) #25	ENSPTRG00000046907	PUM3 (ENSPTRG00000020735) #26	KCNV2 (ENSPTRG00000020734) #27	VLDLR (ENSPTRG00000020732) #28	ENSPTRG00000047815	ENSPTRG00000052144	SMARCA2 (ENSPTRG00000051168) #30	DMRT2 (ENSPTRG00000020730) #31	DMRT3 (ENSPTRG00000020729) #32	DMRT1 (ENSPTRG00000020728) #33	KANK1 (ENSPTRG00000041819) #34
Bonobo	MODERN SPECIES	22	MLANA (ENSPPAG00000038099) #9	ERMP1 (ENSPPAG00000039739) #10	RIC1 (ENSPPAG00000039773) #11	PDCD1LG2 (ENSPPAG00000030710) #12	CD274 (ENSPPAG00000034663) #13	ENSPPAG00000031342	PLGRKT (ENSPPAG00000030588) #14	RLN1 (ENSPPAG00000029999) #15	RLN2 (ENSPPAG00000025312) #15	INSL6 (ENSPPAG00000002535) #16	ENSPPAG00000038776	JAK2 (ENSPPAG00000019000) #17	RCL1 (ENSPPAG00000037958) #18	AK3 (ENSPPAG00000033568) #19	CDC37L1 (ENSPPAG00000038614) #20	SPATA6L (ENSPPAG00000010175) #22	SLC1A1 (ENSPPAG00000027502) #23	GLIS3 (ENSPPAG00000043097) #24	ENSPPAG00000011368	RFX3 (ENSPPAG00000039978) #25	ENSPPAG00000029157	PUM3 (ENSPPAG00000041337) #26	KCNV2 (ENSPPAG00000040791) #27	VLDLR (ENSPPAG00000029389) #28	ENSPPAG00000042393	ENSPPAG00000042332	SMARCA2 (ENSPPAG00000038717) #30	DMRT2 (ENSPPAG00000033739) #31	ENSPPAG00000027768 #32	DMRT1 (ENSPPAG00000036830) #33	DOCK8 (ENSPPAG00000041152) #35
Orangutan	MODERN SPECIES	22	KIAA2026 (ENSPPYG00000029402) #8	MLANA (ENSPPYG00000019233) #9	ERMP1 (ENSPPYG00000019234) #10	RIC1 (ENSPPYG00000019235) #11	PDCD1LG2 (ENSPPYG00000019236) #12	CD274 (ENSPPYG00000019237) #13	PLGRKT (ENSPPYG00000019238) #14	RLN1 (ENSPPYG00000019239) #15	RLN2 (ENSPPYG00000040733) #15	INSL4 (ENSPPYG00000019240) ##15	INSL6 (ENSPPYG00000019242) #16	JAK2 (ENSPPYG00000019243) #17	RCL1 (ENSPPYG00000019244) #18	AK3 (ENSPPYG00000019245) #19	CDC37L1 (ENSPPYG00000019246) #20	SPATA6L (ENSPPYG00000019247) #22	PLPP6 (ENSPPYG00000019248) #21	SLC1A1 (ENSPPYG00000019249) #23	GLIS3 (ENSPPYG00000019250) #24	RFX3 (ENSPPYG00000019253) #25	ENSPPYG00000019254	PUM3 (ENSPPYG00000019255) #26	KCNV2 (ENSPPYG00000019256) #27	VLDLR (ENSPPYG00000019257) #28	ENSPPYG00000041078	SMARCA2 (ENSPPYG00000019258) #30	DMRT2 (ENSPPYG00000035747) #31	DMRT3 (ENSPPYG00000019260) #32	DMRT1 (ENSPPYG00000019261) #33	KANK1 (ENSPPYG00000019262) #34	DOCK8 (ENSPPYG00000019264) #35
Gibbon	MODERN SPECIES	10	RIC1 (ENSNLEG00000009045) #11	PDCD1LG2 (ENSNLEG00000009028) #12	CD274 (ENSNLEG00000009009) #13	ENSNLEG00000028615	PLGRKT (ENSNLEG00000008991) #14	RLN1 (ENSNLEG00000008986) #15	RLN2 (ENSNLEG00000008980) #15	INSL4 (ENSNLEG00000008978) ##15	INSL6 (ENSNLEG00000008974) #16	ENSNLEG00000027963	JAK2 (ENSNLEG00000008897) #17	RCL1 (ENSNLEG00000008891) #18	AK3 (ENSNLEG00000008885) #19	CDC37L1 (ENSNLEG00000008879) #20	ENSNLEG00000028049 #21	SPATA6L (ENSNLEG00000008860) #22	SLC1A1 (ENSNLEG00000031411) #23	ENSNLEG00000035119 #24	ENSNLEG00000034817 #24	ENSNLEG00000028743	RFX3 (ENSNLEG00000008785) #25	ENSNLEG00000029981	PUM3 (ENSNLEG00000008712) #26	KCNV2 (ENSNLEG00000008701) #27	VLDLR (ENSNLEG00000008596) #28	ENSNLEG00000008695	ENSNLEG00000029055	SMARCA2 (ENSNLEG00000008575) #30	DMRT2 (ENSNLEG00000008564) #31	DMRT3 (ENSNLEG00000008556) #32	DMRT1 (ENSNLEG00000008544) #33
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32
Rhinopithecus	ANCESTRAL SPECIES	547													ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25
Black snub-nosed monkey	MODERN SPECIES	1532													RCL1 (ENSRBIG00000035818) #18	AK3 (ENSRBIG00000031255) #19	CDC37L1 (ENSRBIG00000040333) #20	SPATA6L (ENSRBIG00000032203) #22	PLPP6 (ENSRBIG00000001345) #21	SLC1A1 (ENSRBIG00000035099) #23
Golden snub-nosed monkey	MODERN SPECIES	768													RCL1 (ENSRROG00000029781) #18	AK3 (ENSRROG00000036255) #19	CDC37L1 (ENSRROG00000036422) #20	SPATA6L (ENSRROG00000029293) #22	PLPP6 (ENSRROG00000013349) #21	SLC1A1 (ENSRROG00000032409) #23	GLIS3 (ENSRROG00000031282) #24	ENSRROG00000033006	RFX3 (ENSRROG00000033247) #25
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32
Macaca	ANCESTRAL SPECIES	10	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00990000207287	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT01100000264112.b.a	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Rhesus	MODERN SPECIES	6	ERMP1 (ENSMMUG00000005469) #10	RIC1 (ENSMMUG00000009020) #11	ENSMMUG00000063608	PDCD1LG2 (ENSMMUG00000017991) #12	PLGRKT (ENSMMUG00000006197) #14	CD274 (ENSMMUG00000012235) #13	ENSMMUG00000060737	ENSMMUG00000057739	RLN2 (ENSMMUG00000047971) #15	INSL4 (ENSMMUG00000058221) ##15	INSL6 (ENSMMUG00000065127) #16	JAK2 (ENSMMUG00000014558) #17	RCL1 (ENSMMUG00000057331) #18	AK3 (ENSMMUG00000000143) #19	CDC37L1 (ENSMMUG00000000141) #20	SPATA6L (ENSMMUG00000000136) #22	PLPP6 (ENSMMUG00000059411) #21	SLC1A1 (ENSMMUG00000000135) #23	GLIS3 (ENSMMUG00000057568) #24	RFX3 (ENSMMUG00000000802) #25	PUM3 (ENSMMUG00000002362) #26	KCNV2 (ENSMMUG00000060949) #27	VLDLR (ENSMMUG00000015093) #28	SMARCA2 (ENSMMUG00000015279) #30	ENSMMUG00000051059	DMRT2 (ENSMMUG00000014844) #31	DMRT3 (ENSMMUG00000044083) #32	ENSMMUG00000061012	KANK1 (ENSMMUG00000019862) #34	ENSMMUG00000064601	DOCK8 (ENSMMUG00000016976) #35
Crab-eating macaque	MODERN SPECIES	6	PDCD1LG2 (ENSMFAG00000042841) #12	CD274 (ENSMFAG00000044358) #13	ENSMFAG00000048939	PLGRKT (ENSMFAG00000000751) #14	ENSMFAG00000062108	ENSMFAG00000038755	RLN2 (ENSMFAG00000060189) #15	INSL4 (ENSMFAG00000050840) ##15	INSL6 (ENSMFAG00000027620) #16	ENSMFAG00000054197	JAK2 (ENSMFAG00000003627) #17	RCL1 (ENSMFAG00000037906) #18	ENSMFAG00000049440	AK3 (ENSMFAG00000041698) #19	CDC37L1 (ENSMFAG00000000879) #20	SPATA6L (ENSMFAG00000032285) #22	SLC1A1 (ENSMFAG00000038163) #23	ENSMFAG00000030908 #24	ENSMFAG00000049557	RFX3 (ENSMFAG00000000237) #25	ENSMFAG00000049201	PUM3 (ENSMFAG00000001430) #26	KCNV2 (ENSMFAG00000055892) #27	VLDLR (ENSMFAG00000032374) #28	ENSMFAG00000048099	ENSMFAG00000003814 #30	ENSMFAG00000056188	ENSMFAG00000058821 #30	DMRT2 (ENSMFAG00000040812) #31	DMRT3 (ENSMFAG00000045391) #32	ENSMFAG00000060255
Pig-tailed macaque	MODERN SPECIES	182		PDCD1LG2 (ENSMNEG00000022031) #12	CD274 (ENSMNEG00000044065) #13	PLGRKT (ENSMNEG00000035542) #14	ENSMNEG00000006679	ENSMNEG00000039597	RLN2 (ENSMNEG00000045554) #15	INSL4 (ENSMNEG00000038309) ##15	INSL6 (ENSMNEG00000011366) #16	ENSMNEG00000032986	JAK2 (ENSMNEG00000031180) #17	RCL1 (ENSMNEG00000012288) #18	AK3 (ENSMNEG00000041876) #19	CDC37L1 (ENSMNEG00000030663) #20	PLPP6 (ENSMNEG00000001828) #21	SPATA6L (ENSMNEG00000044422) #22	SLC1A1 (ENSMNEG00000029913) #23	GLIS3 (ENSMNEG00000032738) #24	ENSMNEG00000040313	ENSMNEG00000042708	RFX3 (ENSMNEG00000038188) #25	ENSMNEG00000032248	PUM3 (ENSMNEG00000035288) #26	KCNV2 (ENSMNEG00000012723) #27	VLDLR (ENSMNEG00000040863) #28	ENSMNEG00000044919	ENSMNEG00000040152	ENSMNEG00000028744	SMARCA2 (ENSMNEG00000041069) #30	DMRT2 (ENSMNEG00000033851) #31	DMRT3 (ENSMNEG00000035240) #32
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33
Olive baboon	MODERN SPECIES	4	MLANA (ENSPANG00000025182) #9	ERMP1 (ENSPANG00000025174) #10	RIC1 (ENSPANG00000025173) #11	PDCD1LG2 (ENSPANG00000025172) #12	CD274 (ENSPANG00000025169) #13	PLGRKT (ENSPANG00000025170) #14	ENSPANG00000023574	RLN2 (ENSPANG00000040000) #15	INSL4 (ENSPANG00000051326) ##15	INSL6 (ENSPANG00000025144) #16	ENSPANG00000041678	JAK2 (ENSPANG00000025145) #17	RCL1 (ENSPANG00000025151) #18	AK3 (ENSPANG00000025152) #19	CDC37L1 (ENSPANG00000025153) #20	SPATA6L (ENSPANG00000025154) #22	SLC1A1 (ENSPANG00000025156) #23	GLIS3 (ENSPANG00000025157) #24	ENSPANG00000046940	RFX3 (ENSPANG00000025143) #25	PUM3 (ENSPANG00000025118) #26	KCNV2 (ENSPANG00000025119) #27	VLDLR (ENSPANG00000025120) #28	ENSPANG00000042712	SMARCA2 (ENSPANG00000025121) #30	DMRT2 (ENSPANG00000025122) #31	DMRT3 (ENSPANG00000025123) #32	DMRT1 (ENSPANG00000025124) #33	KANK1 (ENSPANG00000025125) #34	DOCK8 (ENSPANG00000025117) #35	ENSPANG00000025116 #36
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00730000111317.d	ENSGT00390000000375 #14	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b ##15	ENSGT00940000154434.b #16	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #25	ENSGT00390000004049.cb	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33
Drill	MODERN SPECIES	978	RIC1 (ENSMLEG00000032920) #11	PDCD1LG2 (ENSMLEG00000021844) #12	CD274 (ENSMLEG00000031295) #13	ENSMLEG00000042007	PLGRKT (ENSMLEG00000042174) #14	ENSMLEG00000035630	RLN2 (ENSMLEG00000039515) #15	INSL4 (ENSMLEG00000034989) ##15	INSL6 (ENSMLEG00000042955) #16	ENSMLEG00000029968	JAK2 (ENSMLEG00000030814) #17	RCL1 (ENSMLEG00000043088) #18	AK3 (ENSMLEG00000032869) #19	CDC37L1 (ENSMLEG00000014590) #20	PLPP6 (ENSMLEG00000009133) #21	SPATA6L (ENSMLEG00000034746) #22	SLC1A1 (ENSMLEG00000042172) #23	GLIS3 (ENSMLEG00000040353) #24	ENSMLEG00000000662	ENSMLEG00000038681	RFX3 (ENSMLEG00000033860) #25	ENSMLEG00000041919	PUM3 (ENSMLEG00000034820) #26	KCNV2 (ENSMLEG00000032357) #27	VLDLR (ENSMLEG00000032288) #28	ENSMLEG00000035182	ENSMLEG00000041221	SMARCA2 (ENSMLEG00000027418) #30
Sooty mangabey	MODERN SPECIES	629	MLANA (ENSCATG00000044699) #9	ERMP1 (ENSCATG00000044284) #10	RIC1 (ENSCATG00000011981) #11	PDCD1LG2 (ENSCATG00000017898) #12	CD274 (ENSCATG00000044292) #13	PLGRKT (ENSCATG00000038359) #14	ENSCATG00000019138	ENSCATG00000039027	RLN2 (ENSCATG00000039089) #15	INSL4 (ENSCATG00000040894) ##15	INSL6 (ENSCATG00000029369) #16	JAK2 (ENSCATG00000024457) #17	RCL1 (ENSCATG00000034721) #18	AK3 (ENSCATG00000044404) #19	CDC37L1 (ENSCATG00000041223) #20	SPATA6L (ENSCATG00000043815) #22	PLPP6 (ENSCATG00000022355) #21	SLC1A1 (ENSCATG00000039114) #23	GLIS3 (ENSCATG00000038488) #24	ENSCATG00000030409	RFX3 (ENSCATG00000034639) #25	ENSCATG00000029808	ENSCATG00000034924	PUM3 (ENSCATG00000024880) #26	KCNV2 (ENSCATG00000037552) #27	VLDLR (ENSCATG00000033177) #28	ENSCATG00000014393	ENSCATG00000034215	SMARCA2 (ENSCATG00000031470) #30	DMRT2 (ENSCATG00000032878) #31	DMRT3 (ENSCATG00000043509) #32
Vervet Monkey	MODERN SPECIES	3	RANBP6 (ENSCSAG00000018489) #7	KIAA2026 (ENSCSAG00000008912) #8	MLANA (ENSCSAG00000008907) #9	ERMP1 (ENSCSAG00000008897) #10	RIC1 (ENSCSAG00000008890) #11	PDCD1LG2 (ENSCSAG00000008883) #12	CD274 (ENSCSAG00000008879) #13	PLGRKT (ENSCSAG00000008877) #14	RLN2 (ENSCSAG00000008867) #15	INSL4 (ENSCSAG00000008859) ##15	INSL6 (ENSCSAG00000008855) #16	JAK2 (ENSCSAG00000008828) #17	RCL1 (ENSCSAG00000008811) #18	AK3 (ENSCSAG00000008801) #19	CDC37L1 (ENSCSAG00000008790) #20	SPATA6L (ENSCSAG00000008768) #22	PLPP6 (ENSCSAG00000018491) #21	SLC1A1 (ENSCSAG00000008723) #23	ENSCSAG00000008711 #24	RFX3 (ENSCSAG00000008704) #25	PUM3 (ENSCSAG00000008691) #26	KCNV2 (ENSCSAG00000008677) #27	VLDLR (ENSCSAG00000008671) #28	ENSCSAG00000008657	SMARCA2 (ENSCSAG00000008650) #30	DMRT2 (ENSCSAG00000008632) #31	DMRT3 (ENSCSAG00000008627) #32	DMRT1 (ENSCSAG00000008623) #33	KANK1 (ENSCSAG00000008611) #34	DOCK8 (ENSCSAG00000008591) #35	ENSCSAG00000018493
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Marmoset	MODERN SPECIES		ERMP1 (ENSCJAG00000011528) #10	RIC1 (ENSCJAG00000011447) #11	ENSCJAG00000048011	PDCD1LG2 (ENSCJAG00000048652) #12	CD274 (ENSCJAG00000011388) #13	PLGRKT (ENSCJAG00000011374) #14	ENSCJAG00000038187 #15	INSL6 (ENSCJAG00000011358) #16	ENSCJAG00000076577	JAK2 (ENSCJAG00000011228) #17	RCL1 (ENSCJAG00000011202) #18	ENSCJAG00000059464	CDC37L1 (ENSCJAG00000011155) #20	AK3 (ENSCJAG00000011188) #19	PLPP6 (ENSCJAG00000063898) #21	SPATA6L (ENSCJAG00000011136) #22	SLC1A1 (ENSCJAG00000011113) #23	ENSCJAG00000073768	GLIS3 (ENSCJAG00000011083) #24	RFX3 (ENSCJAG00000010996) #25	PUM3 (ENSCJAG00000010917) #26	KCNV2 (ENSCJAG00000042809) #27	VLDLR (ENSCJAG00000010772) #28	ENSCJAG00000042690	SMARCA2 (ENSCJAG00000010710) #30	DMRT2 (ENSCJAG00000010690) #31	DMRT3 (ENSCJAG00000063670) #32	ENSCJAG00000084547	KANK1 (ENSCJAG00000010595) #34	DOCK8 (ENSCJAG00000010485) #35	ENSCJAG00000078334
Cebidae_a	ANCESTRAL SPECIES	92										ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00530000063402.a.h	ENSGT00390000004049.ab	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Bolivian squirrel monkey	MODERN SPECIES	118										RCL1 (ENSSBOG00000026369) #18	ENSSBOG00000018606	AK3 (ENSSBOG00000002841) #19	CDC37L1 (ENSSBOG00000032737) #20	PLPP6 (ENSSBOG00000019035) #21	ENSSBOG00000022998	SPATA6L (ENSSBOG00000026985) #22	SLC1A1 (ENSSBOG00000032684) #23	ENSSBOG00000019687	GLIS3 (ENSSBOG00000032997) #24	RFX3 (ENSSBOG00000031103) #25	ENSSBOG00000016907	ENSSBOG00000026932	ENSSBOG00000022458	PUM3 (ENSSBOG00000028066) #26	KCNV2 (ENSSBOG00000023504) #27	VLDLR (ENSSBOG00000031091) #28	ENSSBOG00000020747	SMARCA2 (ENSSBOG00000034827) #30	ENSSBOG00000019886	DMRT2 (ENSSBOG00000010665) #31	DMRT3 (ENSSBOG00000027585) #32
Capuchin	MODERN SPECIES	227										INSL6 (ENSCCAG00000028704) #16	JAK2 (ENSCCAG00000022686) #17	RCL1 (ENSCCAG00000033505) #18	AK3 (ENSCCAG00000024553) #19	CDC37L1 (ENSCCAG00000036002) #20	PLPP6 (ENSCCAG00000017149) #21	SPATA6L (ENSCCAG00000019855) #22	SLC1A1 (ENSCCAG00000024828) #23	GLIS3 (ENSCCAG00000025272) #24	RFX3 (ENSCCAG00000030352) #25	ENSCCAG00000032475	ENSCCAG00000034048	ENSCCAG00000023250	PUM3 (ENSCCAG00000032650) #26	KCNV2 (ENSCCAG00000006608) #27	VLDLR (ENSCCAG00000034631) #28	ENSCCAG00000024458	ENSCCAG00000032291	SMARCA2 (ENSCCAG00000030636) #30
Mas night monkey	MODERN SPECIES	599	KIAA2026 (ENSANAG00000028777) #8	MLANA (ENSANAG00000036926) #9	ERMP1 (ENSANAG00000034115) #10	RIC1 (ENSANAG00000037454) #11	ENSANAG00000025398	PDCD1LG2 (ENSANAG00000020809) #12	ENSANAG00000019149	CD274 (ENSANAG00000028618) #13	PLGRKT (ENSANAG00000022854) #14	ENSANAG00000023659 #15	JAK2 (ENSANAG00000027034) #17	RCL1 (ENSANAG00000037372) #18	AK3 (ENSANAG00000037726) #19	CDC37L1 (ENSANAG00000028426) #20	ENSANAG00000029767	SPATA6L (ENSANAG00000030395) #22	PLPP6 (ENSANAG00000019076) #21	SLC1A1 (ENSANAG00000032125) #23	GLIS3 (ENSANAG00000038022) #24	RFX3 (ENSANAG00000038145) #25	ENSANAG00000036903	PUM3 (ENSANAG00000024520) #26	KCNV2 (ENSANAG00000035114) #27	VLDLR (ENSANAG00000020851) #28	ENSANAG00000029407	SMARCA2 (ENSANAG00000026498) #30	ENSANAG00000018592	DMRT2 (ENSANAG00000020591) #31	DMRT3 (ENSANAG00000027840) #32	DMRT1 (ENSANAG00000030765) #33
Tarsier	MODERN SPECIES	1260																SPATA6L (ENSTSYG00000005363) #22	SLC1A1 (ENSTSYG00000008532) #23
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896.q #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896.q #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896.q #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750	ENSGT00640000091523.s #36
Coquerels sifaka	MODERN SPECIES	549												RCL1 (ENSPCOG00000009611) #18	ENSPCOG00000024436 #19	CDC37L1 (ENSPCOG00000025983) #20	PLPP6 (ENSPCOG00000013586) #21	SPATA6L (ENSPCOG00000001879) #22	SLC1A1 (ENSPCOG00000013653) #23	GLIS3 (ENSPCOG00000022619) #24	RFX3 (ENSPCOG00000022172) #25	PUM3 (ENSPCOG00000027325) #26	KCNV2 (ENSPCOG00000023607) #27	VLDLR (ENSPCOG00000026506) #28	ENSPCOG00000019796	ENSPCOG00000026110	SMARCA2 (ENSPCOG00000025709) #30
Greater bamboo lemur	MODERN SPECIES	152						PDCD1LG2 (ENSPSMG00000024781) #12	CD274 (ENSPSMG00000024783) #13	PLGRKT (ENSPSMG00000024787) #14	ENSPSMG00000024791 #15	INSL6 (ENSPSMG00000024793) #16	ENSPSMG00000024795	JAK2 (ENSPSMG00000024838) #17	RCL1 (ENSPSMG00000024848) #18	AK3 (ENSPSMG00000024859) #19	CDC37L1 (ENSPSMG00000024864) #20	SPATA6L (ENSPSMG00000024878) #22	PLPP6 (ENSPSMG00000024881) #21	SLC1A1 (ENSPSMG00000024890) #23	GLIS3 (ENSPSMG00000024897) #24	RFX3 (ENSPSMG00000024938) #25	ENSPSMG00000024950	ENSPSMG00000024956 #26	KCNV2 (ENSPSMG00000024960) #27	VLDLR (ENSPSMG00000025041) #28	ENSPSMG00000025075	SMARCA2 (ENSPSMG00000025173) #30	ENSPSMG00000025195	DMRT2 (ENSPSMG00000025206) #31	DMRT3 (ENSPSMG00000025210) #32	DMRT1 (ENSPSMG00000025222) #33	KANK1 (ENSPSMG00000025243) #34
Mouse lemur	MODERN SPECIES	1	ENSMICG00000026566	KIAA2026 (ENSMICG00000032366) #8	MLANA (ENSMICG00000048054) #9	ERMP1 (ENSMICG00000016329) #10	ENSMICG00000030745	RIC1 (ENSMICG00000016293) #11	PDCD1LG2 (ENSMICG00000004284) #12	CD274 (ENSMICG00000035171) #13	PLGRKT (ENSMICG00000031798) #14	ENSMICG00000043730 #15	INSL6 (ENSMICG00000044551) #16	JAK2 (ENSMICG00000003885) #17	RCL1 (ENSMICG00000015562) #18	ENSMICG00000013112 #19	CDC37L1 (ENSMICG00000017690) #20	SPATA6L (ENSMICG00000017688) #22	SLC1A1 (ENSMICG00000005171) #23	ENSMICG00000031277 #24	ENSMICG00000041775 #24	RFX3 (ENSMICG00000011871) #25	ENSMICG00000029542	PUM3 (ENSMICG00000045916) #26	KCNV2 (ENSMICG00000005193) #27	VLDLR (ENSMICG00000005182) #28	ENSMICG00000005190	SMARCA2 (ENSMICG00000005162) #30	DMRT2 (ENSMICG00000010426) #31	DMRT3 (ENSMICG00000044854) #32	DMRT1 (ENSMICG00000010417) #33	KANK1 (ENSMICG00000010410) #34	DOCK8 (ENSMICG00000008267) #35
Bushbaby	MODERN SPECIES	121	ENSOGAG00000004525	RANBP6 (ENSOGAG00000010992) #7	ENSOGAG00000032415 #8	ENSOGAG00000030737 #8	MLANA (ENSOGAG00000010986) #9	ERMP1 (ENSOGAG00000012020) #10	RIC1 (ENSOGAG00000012009) #11	PDCD1LG2 (ENSOGAG00000003284) #12	CD274 (ENSOGAG00000003282) #13	PLGRKT (ENSOGAG00000003280) #14	ENSOGAG00000009500 #15	JAK2 (ENSOGAG00000012246) #17	RCL1 (ENSOGAG00000007480) #18	AK3 (ENSOGAG00000007477) #19	CDC37L1 (ENSOGAG00000007475) #20	SPATA6L (ENSOGAG00000007468) #22	PLPP6 (ENSOGAG00000007472) #21	SLC1A1 (ENSOGAG00000007464) #23	GLIS3 (ENSOGAG00000007376) #24	RFX3 (ENSOGAG00000007762) #25	ENSOGAG00000008125 #26	KCNV2 (ENSOGAG00000030433) #27	VLDLR (ENSOGAG00000013312) #28	SMARCA2 (ENSOGAG00000017053) #30	ENSOGAG00000025218	DMRT2 (ENSOGAG00000001994) #31	DMRT3 (ENSOGAG00000026565) #32	DMRT1 (ENSOGAG00000001989) #33	KANK1 (ENSOGAG00000001985) #34	ENSOGAG00000031226	DOCK8 (ENSOGAG00000004639) #35
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Suina	ANCESTRAL SPECIES	23	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00520000061590	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Pig	MODERN SPECIES		MLANA (ENSSSCG00000005206) #9	ERMP1 (ENSSSCG00000005207) #10	RIC1 (ENSSSCG00000005208) #11	ENSSSCG00000005209	PDCD1LG2 (ENSSSCG00000032561) #12	CD274 (ENSSSCG00000005211) #13	PLGRKT (ENSSSCG00000005212) #14	ENSSSCG00000005216 #15	INSL6 (ENSSSCG00000005214) #16	JAK2 (ENSSSCG00000005215) #17	ENSSSCG00000052472	ENSSSCG00000005217 #18	ENSSSCG00000058562 #18	AK3 (ENSSSCG00000023595) #19	CDC37L1 (ENSSSCG00000005219) #20	SPATA6L (ENSSSCG00000005221) #22	PLPP6 (ENSSSCG00000005220) #21	SLC1A1 (ENSSSCG00000005222) #23	GLIS3 (ENSSSCG00000005224) #24	RFX3 (ENSSSCG00000005225) #25	ENSSSCG00000039823	PUM3 (ENSSSCG00000005227) #26	KCNV2 (ENSSSCG00000005228) #27	VLDLR (ENSSSCG00000005229) #28	ENSSSCG00000040670	ENSSSCG00000052990	ENSSSCG00000041522	ENSSSCG00000005232 #30	ENSSSCG00000057314 #30	ENSSSCG00000032324	ENSSSCG00000044946
Chacoan peccary	MODERN SPECIES	20	ERMP1 (ENSCWAG00000021102) #10	RIC1 (ENSCWAG00000021078) #11	ENSCWAG00000021040	PDCD1LG2 (ENSCWAG00000021026) #12	CD274 (ENSCWAG00000021014) #13	PLGRKT (ENSCWAG00000021002) #14	ENSCWAG00000020963 #15	INSL6 (ENSCWAG00000020954) #16	JAK2 (ENSCWAG00000020930) #17	ENSCWAG00000020920	ENSCWAG00000020913	RCL1 (ENSCWAG00000020883) #18	AK3 (ENSCWAG00000020856) #19	CDC37L1 (ENSCWAG00000020832) #20	PLPP6 (ENSCWAG00000020823) #21	SPATA6L (ENSCWAG00000020801) #22	SLC1A1 (ENSCWAG00000020776) #23	GLIS3 (ENSCWAG00000020767) #24	ENSCWAG00000020759	RFX3 (ENSCWAG00000020726) #25	PUM3 (ENSCWAG00000020700) #26	KCNV2 (ENSCWAG00000020693) #27	ENSCWAG00000020684	VLDLR (ENSCWAG00000020653) #28	SMARCA2 (ENSCWAG00000020512) #30	ENSCWAG00000020471	DMRT2 (ENSCWAG00000020422) #31	DMRT3 (ENSCWAG00000020400) #32	DMRT1 (ENSCWAG00000020382) #33	KANK1 (ENSCWAG00000020332) #34	DOCK8 (ENSCWAG00000019884) #35
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Camelidae	ANCESTRAL SPECIES	5	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a.e #15	ENSGT00940000154434.a.f #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000169111	ENSGT00640000091523 #36
Arabian camel	MODERN SPECIES	30	KIAA2026 (ENSCDRG00005005203) #8	MLANA (ENSCDRG00005005180) #9	ERMP1 (ENSCDRG00005005148) #10	RIC1 (ENSCDRG00005004883) #11	PDCD1LG2 (ENSCDRG00005004849) #12	CD274 (ENSCDRG00005004734) #13	ENSCDRG00005004708 #15	PLGRKT (ENSCDRG00005004613) #14	ENSCDRG00005004570 #15	INSL6 (ENSCDRG00005004548) #16	JAK2 (ENSCDRG00005004520) #17	RCL1 (ENSCDRG00005004458) #18	AK3 (ENSCDRG00005004398) #19	CDC37L1 (ENSCDRG00005004358) #20	PLPP6 (ENSCDRG00005004350) #21	SPATA6L (ENSCDRG00005004284) #22	SLC1A1 (ENSCDRG00005004192) #23	GLIS3 (ENSCDRG00005004109) #24	RFX3 (ENSCDRG00005004007) #25	ENSCDRG00005003916	PUM3 (ENSCDRG00005003846) #26	KCNV2 (ENSCDRG00005003822) #27	VLDLR (ENSCDRG00005003699) #28	ENSCDRG00005003352 #30	DMRT2 (ENSCDRG00005003248) #31	DMRT3 (ENSCDRG00005003237) #32	DMRT1 (ENSCDRG00005003226) #33	KANK1 (ENSCDRG00005003188) #34	DOCK8 (ENSCDRG00005003115) #35	ENSCDRG00005003094	ENSCDRG00005002760 #36
Alpaca	MODERN SPECIES	3435											INSL6 (ENSVPAG00000009194) #16	JAK2 (ENSVPAG00000009189) #17	RCL1 (ENSVPAG00000009188) #18	AK3 (ENSVPAG00000009187) #19	CDC37L1 (ENSVPAG00000009186) #20	SPATA6L (ENSVPAG00000009184) #22	SLC1A1 (ENSVPAG00000009183) #23
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Yarkand deer	MODERN SPECIES	21	ENSCHYG00000026163	IL33 (ENSCHYG00000026175)	ENSCHYG00000026199	KIAA2026 (ENSCHYG00000026213) #8	MLANA (ENSCHYG00000026247) #9	ERMP1 (ENSCHYG00000026281) #10	RIC1 (ENSCHYG00000026365) #11	PDCD1LG2 (ENSCHYG00000026474) #12	CD274 (ENSCHYG00000026492) #13	PLGRKT (ENSCHYG00000026504) #14	INSL6 (ENSCHYG00000026514) #16	JAK2 (ENSCHYG00000026521) #17	RCL1 (ENSCHYG00000026548) #18	AK3 (ENSCHYG00000026564) #19	CDC37L1 (ENSCHYG00000026576) #20	SPATA6L (ENSCHYG00000026599) #22	PLPP6 (ENSCHYG00000026621) #21	SLC1A1 (ENSCHYG00000026638) #23	GLIS3 (ENSCHYG00000026667) #24	RFX3 (ENSCHYG00000026695) #25	PUM3 (ENSCHYG00000026723) #26	KCNV2 (ENSCHYG00000026745) #27	VLDLR (ENSCHYG00000026763) #28	ENSCHYG00000026782	SMARCA2 (ENSCHYG00000026820) #30	DMRT2 (ENSCHYG00000026873) #31	DMRT3 (ENSCHYG00000026880) #32	DMRT1 (ENSCHYG00000014189) #33	ENSCHYG00000014288	KANK1 (ENSCHYG00000014368) #34	DOCK8 (ENSCHYG00000014734) #35
Percora_a	ANCESTRAL SPECIES	24	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000162767 #7	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Bovinae	ANCESTRAL SPECIES	14	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Bos	ANCESTRAL SPECIES	10	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005019895	MLANA (ENSBIXG00005006149) #9	ENSBIXG00005003243	ENSBIXG00005019813	ERMP1 (ENSBIXG00005000033) #10	RIC1 (ENSBIXG00005019710) #11	ENSBIXG00005019603	PDCD1LG2 (ENSBIXG00005019595) #12	CD274 (ENSBIXG00005003188) #13	PLGRKT (ENSBIXG00005006397) #14	INSL6 (ENSBIXG00005003183) #16	JAK2 (ENSBIXG00005003171) #17	RCL1 (ENSBIXG00005019414) #18	AK3 (ENSBIXG00005019326) #19	CDC37L1 (ENSBIXG00005019277) #20	SPATA6L (ENSBIXG00005019220) #22	ENSBIXG00005019159	PLPP6 (ENSBIXG00005019138) #21	SLC1A1 (ENSBIXG00005019133) #23	ENSBIXG00005019106	GLIS3 (ENSBIXG00005002642) #24	RFX3 (ENSBIXG00005003091) #25	ENSBIXG00005018899	PUM3 (ENSBIXG00005018805) #26	KCNV2 (ENSBIXG00005018778) #27	VLDLR (ENSBIXG00005003037) #28	ENSBIXG00005005990	SMARCA2 (ENSBIXG00005018551) #30	DMRT2 (ENSBIXG00005018266) #31	DMRT3 (ENSBIXG00005018199) #32	DMRT1 (ENSBIXG00005018189) #33
Bos_a	ANCESTRAL SPECIES	30	ENSGT00940000167431	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00910000144347.a.a	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36	ENSGT00940000163353 #37
Domestic yak	MODERN SPECIES	26	MLANA (ENSBGRG00000006530) #9	ERMP1 (ENSBGRG00000006502) #10	ENSBGRG00000006488	RIC1 (ENSBGRG00000006377) #11	PDCD1LG2 (ENSBGRG00000006267) #12	CD274 (ENSBGRG00000006097) #13	PLGRKT (ENSBGRG00000006032) #14	INSL6 (ENSBGRG00000006012) #16	JAK2 (ENSBGRG00000005982) #17	ENSBGRG00000005967	RCL1 (ENSBGRG00000005812) #18	AK3 (ENSBGRG00000005727) #19	CDC37L1 (ENSBGRG00000005637) #20	ENSBGRG00000005568	PLPP6 (ENSBGRG00000005557) #21	SPATA6L (ENSBGRG00000005420) #22	SLC1A1 (ENSBGRG00000005214) #23	GLIS3 (ENSBGRG00000005123) #24	ENSBGRG00000005096	ENSBGRG00000005081	RFX3 (ENSBGRG00000004985) #25	ENSBGRG00000004951	PUM3 (ENSBGRG00000004833) #26	KCNV2 (ENSBGRG00000004767) #27	VLDLR (ENSBGRG00000004545) #28	SMARCA2 (ENSBGRG00000004107) #30	DMRT2 (ENSBGRG00000003984) #31	DMRT3 (ENSBGRG00000003946) #32	DMRT1 (ENSBGRG00000003868) #33	KANK1 (ENSBGRG00000003717) #34	ENSBGRG00000003655
Wild yak	MODERN SPECIES	400			ENSBMUG00000004833	KIAA2026 (ENSBMUG00000004847) #8	MLANA (ENSBMUG00000004855) #9	ERMP1 (ENSBMUG00000004882) #10	RIC1 (ENSBMUG00000005025) #11	PDCD1LG2 (ENSBMUG00000005066) #12	CD274 (ENSBMUG00000005088) #13	PLGRKT (ENSBMUG00000005103) #14	INSL6 (ENSBMUG00000005110) #16	JAK2 (ENSBMUG00000005141) #17	RCL1 (ENSBMUG00000005171) #18	AK3 (ENSBMUG00000005196) #19	CDC37L1 (ENSBMUG00000005208) #20	SPATA6L (ENSBMUG00000005249) #22	ENSBMUG00000005270	PLPP6 (ENSBMUG00000005280) #21	SLC1A1 (ENSBMUG00000005311) #23
American bison	MODERN SPECIES	3328							CD274 (ENSBBBG00000015809) #13	PLGRKT (ENSBBBG00000015820) #14	INSL6 (ENSBBBG00000015826) #16	JAK2 (ENSBBBG00000015845) #17	RCL1 (ENSBBBG00000015884) #18	AK3 (ENSBBBG00000003960) #19	CDC37L1 (ENSBBBG00000002586) #20	ENSBBBG00000003969	PLPP6 (ENSBBBG00000015953) #21	SPATA6L (ENSBBBG00000015978) #22	SLC1A1 (ENSBBBG00000015989) #23	GLIS3 (ENSBBBG00000016019) #24	RFX3 (ENSBBBG00000003993) #25	PUM3 (ENSBBBG00000007035) #26	KCNV2 (ENSBBBG00000016123) #27	ENSBBBG00000007174	VLDLR (ENSBBBG00000008333) #28	ENSBBBG00000016209	SMARCA2 (ENSBBBG00000004105) #30	DMRT2 (ENSBBBG00000016627) #31	DMRT3 (ENSBBBG00000016636) #32	DMRT1 (ENSBBBG00000016649) #33	KANK1 (ENSBBBG00000007906) #34	ENSBBBG00000000733	DOCK8 (ENSBBBG00000017006) #35
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00660000097148	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Goat	MODERN SPECIES	27	IL33 (ENSCHIG00000020304)	RANBP6 (ENSCHIG00000006704) #7	KIAA2026 (ENSCHIG00000024183) #8	MLANA (ENSCHIG00000014493) #9	ERMP1 (ENSCHIG00000026817) #10	RIC1 (ENSCHIG00000021856) #11	PDCD1LG2 (ENSCHIG00000024438) #12	CD274 (ENSCHIG00000017335) #13	PLGRKT (ENSCHIG00000017669) #14	JAK2 (ENSCHIG00000003903) #17	INSL6 (ENSCHIG00000020505) #16	RCL1 (ENSCHIG00000012407) #18	AK3 (ENSCHIG00000024602) #19	CDC37L1 (ENSCHIG00000025238) #20	ENSCHIG00000010369	SPATA6L (ENSCHIG00000020946) #22	PLPP6 (ENSCHIG00000001745) #21	SLC1A1 (ENSCHIG00000018337) #23	ENSCHIG00000007959	ENSCHIG00000019534 #24	RFX3 (ENSCHIG00000011556) #25	PUM3 (ENSCHIG00000021559) #26	KCNV2 (ENSCHIG00000011625) #27	VLDLR (ENSCHIG00000021572) #28	ENSCHIG00000012185	SMARCA2 (ENSCHIG00000025863) #30	DMRT2 (ENSCHIG00000020138) #31	DMRT3 (ENSCHIG00000013041) #32	DMRT1 (ENSCHIG00000024212) #33	KANK1 (ENSCHIG00000018134) #34	DOCK8 (ENSCHIG00000014695) #35
Siberian musk deer	MODERN SPECIES	111									PLGRKT (ENSMMSG00000001829) #14	INSL6 (ENSMMSG00000001838) #16	JAK2 (ENSMMSG00000001846) #17	ENSMMSG00000001874	RCL1 (ENSMMSG00000001886) #18	AK3 (ENSMMSG00000001923) #19	CDC37L1 (ENSMMSG00000001936) #20	SPATA6L (ENSMMSG00000001959) #22	PLPP6 (ENSMMSG00000002003) #21	SLC1A1 (ENSMMSG00000002015) #23	GLIS3 (ENSMMSG00000002042) #24	RFX3 (ENSMMSG00000002070) #25	ENSMMSG00000002091	PUM3 (ENSMMSG00000002099) #26	KCNV2 (ENSMMSG00000002132) #27	VLDLR (ENSMMSG00000002160) #28	ENSMMSG00000002256
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	50	RANBP6 (ENSDLEG00000019757) #7	KIAA2026 (ENSDLEG00000019748) #8	MLANA (ENSDLEG00000019742) #9	ERMP1 (ENSDLEG00000019731) #10	RIC1 (ENSDLEG00000019725) #11	PDCD1LG2 (ENSDLEG00000019719) #12	CD274 (ENSDLEG00000019715) #13	PLGRKT (ENSDLEG00000019711) #14	RLN1 (ENSDLEG00000019703) #15	ENSDLEG00000019692 #16	JAK2 (ENSDLEG00000019680) #17	RCL1 (ENSDLEG00000019668) #18	AK3 (ENSDLEG00000019654) #19	CDC37L1 (ENSDLEG00000019644) #20	PLPP6 (ENSDLEG00000019637) #21	ENSDLEG00000019609 #22	ENSDLEG00000019547 #22	SLC1A1 (ENSDLEG00000019531) #23	ENSDLEG00000019522	ENSDLEG00000019514 #24	RFX3 (ENSDLEG00000019460) #25	PUM3 (ENSDLEG00000019389) #26	KCNV2 (ENSDLEG00000019382) #27	VLDLR (ENSDLEG00000019340) #28	SMARCA2 (ENSDLEG00000019318) #30	ENSDLEG00000019309	ENSDLEG00000019303	DMRT2 (ENSDLEG00000019289) #31	ENSDLEG00000019284 ##31	DMRT3 (ENSDLEG00000019280) #32	DMRT1 (ENSDLEG00000019261) #33
Beluga whale	MODERN SPECIES	50	KIAA2026 (ENSDLEG00000019748) #8	MLANA (ENSDLEG00000019742) #9	ERMP1 (ENSDLEG00000019731) #10	RIC1 (ENSDLEG00000019725) #11	PDCD1LG2 (ENSDLEG00000019719) #12	CD274 (ENSDLEG00000019715) #13	PLGRKT (ENSDLEG00000019711) #14	RLN1 (ENSDLEG00000019703) #15	ENSDLEG00000019692 #16	JAK2 (ENSDLEG00000019680) #17	RCL1 (ENSDLEG00000019668) #18	AK3 (ENSDLEG00000019654) #19	CDC37L1 (ENSDLEG00000019644) #20	PLPP6 (ENSDLEG00000019637) #21	ENSDLEG00000019609 #22	ENSDLEG00000019547 #22	SLC1A1 (ENSDLEG00000019531) #23	ENSDLEG00000019522	ENSDLEG00000019514 #24	RFX3 (ENSDLEG00000019460) #25	PUM3 (ENSDLEG00000019389) #26	KCNV2 (ENSDLEG00000019382) #27	VLDLR (ENSDLEG00000019340) #28	SMARCA2 (ENSDLEG00000019318) #30	ENSDLEG00000019309	ENSDLEG00000019303	DMRT2 (ENSDLEG00000019289) #31	ENSDLEG00000019284 ##31	DMRT3 (ENSDLEG00000019280) #32	DMRT1 (ENSDLEG00000019261) #33	KANK1 (ENSDLEG00000019090) #34
Narwhal	MODERN SPECIES	312	IL33 (ENSMMNG00015020337)	ENSMMNG00015020366	KIAA2026 (ENSMMNG00015020402) #8	MLANA (ENSMMNG00015020456) #9	ERMP1 (ENSMMNG00015020481) #10	RIC1 (ENSMMNG00015020565) #11	PDCD1LG2 (ENSMMNG00015020694) #12	CD274 (ENSMMNG00015020739) #13	PLGRKT (ENSMMNG00015020757) #14	ENSMMNG00015020775 #15	ENSMMNG00015020785 #16	JAK2 (ENSMMNG00015020808) #17	RCL1 (ENSMMNG00015020841) #18	AK3 (ENSMMNG00015020890) #19	CDC37L1 (ENSMMNG00015020918) #20	SPATA6L (ENSMMNG00015020944) #22	PLPP6 (ENSMMNG00015020983) #21	SLC1A1 (ENSMMNG00015020990) #23	GLIS3 (ENSMMNG00015021011) #24	RFX3 (ENSMMNG00015021042) #25	ENSMMNG00015021179	PUM3 (ENSMMNG00015021202) #26	KCNV2 (ENSMMNG00015021226) #27	VLDLR (ENSMMNG00015021252) #28	SMARCA2 (ENSMMNG00015021345) #30	ENSMMNG00015021422	ENSMMNG00015021427	DMRT2 (ENSMMNG00015013077) #31	DMRT3 (ENSMMNG00015013099) #32	DMRT1 (ENSMMNG00015013112) #33	KANK1 (ENSMMNG00015013138) #34
Vaquita	MODERN SPECIES	17	TPD52L3 (ENSPSNG00000021045)	IL33 (ENSPSNG00000021022)	RANBP6 (ENSPSNG00000020980) #7	KIAA2026 (ENSPSNG00000020897) #8	MLANA (ENSPSNG00000020843) #9	ERMP1 (ENSPSNG00000020793) #10	RIC1 (ENSPSNG00000020684) #11	ENSPSNG00000020589 #12	PLGRKT (ENSPSNG00000020541) #14	ENSPSNG00000020509 #15	JAK2 (ENSPSNG00000020398) #17	RCL1 (ENSPSNG00000020330) #18	AK3 (ENSPSNG00000020263) #19	CDC37L1 (ENSPSNG00000020228) #20	PLPP6 (ENSPSNG00000020203) #21	SPATA6L (ENSPSNG00000020084) #22	SLC1A1 (ENSPSNG00000019992) #23	GLIS3 (ENSPSNG00000019903) #24	RFX3 (ENSPSNG00000019643) #25	PUM3 (ENSPSNG00000019496) #26	KCNV2 (ENSPSNG00000019443) #27	VLDLR (ENSPSNG00000019297) #28	SMARCA2 (ENSPSNG00000018802) #30	ENSPSNG00000018632	ENSPSNG00000018606	DMRT2 (ENSPSNG00000018429) #31	DMRT3 (ENSPSNG00000018387) #32	DMRT1 (ENSPSNG00000018301) #33	KANK1 (ENSPSNG00000018178) #34	DOCK8 (ENSPSNG00000016745) #35	ENSPSNG00000016463 #36
Dolphin	MODERN SPECIES	3311												RCL1 (ENSTTRG00000016525) #18	AK3 (ENSTTRG00000016524) #19	CDC37L1 (ENSTTRG00000016523) #20	PLPP6 (ENSTTRG00000016522) #21	SPATA6L (ENSTTRG00000016521) #22
Sperm whale	MODERN SPECIES	20	RANBP6 (ENSPCTG00005006329)	KIAA2026 (ENSPCTG00005006243) #8	MLANA (ENSPCTG00005006205) #9	ERMP1 (ENSPCTG00005006142) #10	RIC1 (ENSPCTG00005006024) #11	PDCD1LG2 (ENSPCTG00005005956) #12	CD274 (ENSPCTG00005005931) #13	PLGRKT (ENSPCTG00005005902) #14	ENSPCTG00005005885 #15	INSL6 (ENSPCTG00005005856) #16	JAK2 (ENSPCTG00005005720) #17	RCL1 (ENSPCTG00005005644) #18	AK3 (ENSPCTG00005005584) #19	CDC37L1 (ENSPCTG00005005531) #20	PLPP6 (ENSPCTG00005005512) #21	SPATA6L (ENSPCTG00005005489) #22	SLC1A1 (ENSPCTG00005005440) #23	GLIS3 (ENSPCTG00005005407) #24	RFX3 (ENSPCTG00005005359) #25	ENSPCTG00005005299	PUM3 (ENSPCTG00005005228) #26	KCNV2 (ENSPCTG00005005193) #27	VLDLR (ENSPCTG00005004995) #28	ENSPCTG00005004736 #30	ENSPCTG00005004691	ENSPCTG00005004671	DMRT2 (ENSPCTG00005004572) #31	DMRT3 (ENSPCTG00005004535) #32	DMRT1 (ENSPCTG00005004498) #33	KANK1 (ENSPCTG00005004438) #34	DOCK8 (ENSPCTG00005004178) #35
Blue whale	MODERN SPECIES	17	ENSBMSG00010003773 #7	ENSBMSG00010003784	KIAA2026 (ENSBMSG00010003802) #8	MLANA (ENSBMSG00010003817) #9	ERMP1 (ENSBMSG00010003832) #10	RIC1 (ENSBMSG00010003869) #11	PDCD1LG2 (ENSBMSG00010003898) #12	CD274 (ENSBMSG00010003928) #13	PLGRKT (ENSBMSG00010003942) #14	ENSBMSG00010003948 #15	INSL6 (ENSBMSG00010003955) #16	JAK2 (ENSBMSG00010003969) #17	RCL1 (ENSBMSG00010003993) #18	AK3 (ENSBMSG00010004013) #19	CDC37L1 (ENSBMSG00010004036) #20	SPATA6L (ENSBMSG00010004050) #22	PLPP6 (ENSBMSG00010004080) #21	SLC1A1 (ENSBMSG00010004095) #23	GLIS3 (ENSBMSG00010004124) #24	RFX3 (ENSBMSG00010004165) #25	PUM3 (ENSBMSG00010004204) #26	KCNV2 (ENSBMSG00010004219) #27	VLDLR (ENSBMSG00010004233) #28	SMARCA2 (ENSBMSG00010004262) #30	DMRT2 (ENSBMSG00010004396) #31	DMRT3 (ENSBMSG00010004420) #32	DMRT1 (ENSBMSG00010004442) #33	KANK1 (ENSBMSG00010000089) #34	ENSBMSG00010000100	DOCK8 (ENSBMSG00010000177) #35	ENSBMSG00010000431
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Carnivora	ANCESTRAL SPECIES	25	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Caniformia	ANCESTRAL SPECIES	29	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Ursidae	ANCESTRAL SPECIES	43	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Ursus	ANCESTRAL SPECIES	50	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839.h #10	ENSGT00530000063839.g #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120.hb.a #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000166172	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Polar bear	MODERN SPECIES	171	ENSUMAG00000016671	ENSUMAG00000016672	ENSUMAG00000016675	ENSUMAG00000016678	ENSUMAG00000016687 #10	ENSUMAG00000016690 #10	RIC1 (ENSUMAG00000016695) #11	PDCD1LG2 (ENSUMAG00000016707) #12	CD274 (ENSUMAG00000016708) #13	ENSUMAG00000016719 #14	INSL6 (ENSUMAG00000016724) #16	JAK2 (ENSUMAG00000016820) #17	RCL1 (ENSUMAG00000017890) #18	ENSUMAG00000017904 #19	CDC37L1 (ENSUMAG00000017926) #20	SPATA6L (ENSUMAG00000017942) #22	ENSUMAG00000017954 #21	SLC1A1 (ENSUMAG00000017970) #23	GLIS3 (ENSUMAG00000018031) #24	RFX3 (ENSUMAG00000018101) #25	ENSUMAG00000018118	ENSUMAG00000018187	PUM3 (ENSUMAG00000018443) #26	KCNV2 (ENSUMAG00000018690) #27	VLDLR (ENSUMAG00000018747) #28	ENSUMAG00000019303 #30	ENSUMAG00000019328 #30	DMRT2 (ENSUMAG00000019339) #31	ENSUMAG00000019350 #33	KANK1 (ENSUMAG00000019362) #34	DOCK8 (ENSUMAG00000019524) #35
American black bear	MODERN SPECIES	4544													ENSUAMG00000008999 #19	CDC37L1 (ENSUAMG00000009007) #20	PLPP6 (ENSUAMG00000009008) #21	SPATA6L (ENSUAMG00000009016) #22	SLC1A1 (ENSUAMG00000009116) #23
Giant Panda	MODERN SPECIES	8	ENSAMEG00000026961	ENSAMEG00000017286	ENSAMEG00000031178	ENSAMEG00000009909	ENSAMEG00000009883 #10	RIC1 (ENSAMEG00000009846) #11	PDCD1LG2 (ENSAMEG00000009830) #12	PLGRKT (ENSAMEG00000009795) #14	CD274 (ENSAMEG00000009800) #13	ENSAMEG00000009780 #15	INSL6 (ENSAMEG00000009778) #16	JAK2 (ENSAMEG00000009661) #17	RCL1 (ENSAMEG00000002631) #18	AK3 (ENSAMEG00000002640) #19	CDC37L1 (ENSAMEG00000002657) #20	ENSAMEG00000002674 #22	SLC1A1 (ENSAMEG00000002682) #23	GLIS3 (ENSAMEG00000002733) #24	RFX3 (ENSAMEG00000012132) #25	ENSAMEG00000012183	PUM3 (ENSAMEG00000012187) #26	KCNV2 (ENSAMEG00000012228) #27	VLDLR (ENSAMEG00000012233) #28	ENSAMEG00000027822	SMARCA2 (ENSAMEG00000012325) #30	ENSAMEG00000019747	DMRT2 (ENSAMEG00000006648) #31	DMRT3 (ENSAMEG00000006664) #32	KANK1 (ENSAMEG00000006667) #34	DOCK8 (ENSAMEG00000006698) #35	ENSAMEG00000006824 #36
Mustelinae	ANCESTRAL SPECIES	87					ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #21	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00940000164995
American mink	MODERN SPECIES	365									PLGRKT (ENSNVIG00000021188) #14	ENSNVIG00000021190 #15	INSL6 (ENSNVIG00000021192) #16	JAK2 (ENSNVIG00000021199) #17	RCL1 (ENSNVIG00000021229) #18	AK3 (ENSNVIG00000021277) #19	CD37L (ENSNVIG00000021293) #20	SPATA6L (ENSNVIG00000021312) #22	PLPP6 (ENSNVIG00000021343) #21	SLC1A1 (ENSNVIG00000021350) #23	GLIS3 (ENSNVIG00000021365) #24
Ferret	MODERN SPECIES	281	ZNF484 (ENSMPUG00000004860)	ENSMPUG00000019578	MFSD14B (ENSMPUG00000004866)	ENSMPUG00000004873	ERMP1 (ENSMPUG00000004878) #10	ENSMPUG00000004889 #11	ENSMPUG00000004903 #11	PDCD1LG2 (ENSMPUG00000004909) #12	CD274 (ENSMPUG00000004954) #13	ENSMPUG00000004961 #15	INSL6 (ENSMPUG00000004968) #16	JAK2 (ENSMPUG00000004974) #17	RCL1 (ENSMPUG00000004998) #18	AK3 (ENSMPUG00000005006) #19	CDC37L1 (ENSMPUG00000005018) #20	SPATA6L (ENSMPUG00000005024) #22	SLC1A1 (ENSMPUG00000005081) #23	GLIS3 (ENSMPUG00000005095) #24	RFX3 (ENSMPUG00000005101) #25	ENSMPUG00000005120	PUM3 (ENSMPUG00000005125) #26	KCNV2 (ENSMPUG00000005137) #27	VLDLR (ENSMPUG00000005155) #28	ENSMPUG00000005169	SMARCA2 (ENSMPUG00000005171) #30	ENSMPUG00000005192	DMRT2 (ENSMPUG00000005199) #31	DMRT1 (ENSMPUG00000005204) #33	KANK1 (ENSMPUG00000005216) #34	DOCK8 (ENSMPUG00000005223) #35	ENSMPUG00000005707
Canidae	ANCESTRAL SPECIES	47	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120.lb.b #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000154257.j.nb.a	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT01050000248397	ENSGT00530000063404.a #18	ENSGT00940000155120.lb.b #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Dog	MODERN SPECIES		ENSCAFG00845016712 #10	RIC1 (ENSCAFG00845016384) #11	PDCD1LG2 (ENSCAFG00845016232) #12	CD274 (ENSCAFG00845016107) #13	PLGRKT (ENSCAFG00845016070) #14	RLN2 (ENSCAFG00845016044) #15	INSL6 (ENSCAFG00845016024) #16	ENSCAFG00845016006	JAK2 (ENSCAFG00845015887) #17	ENSCAFG00845015836	JAK2 (ENSCAFG00845015728) #18	ENSCAFG00845015667	ENSCAFG00845015626 #19	CDC37L1 (ENSCAFG00845015553) #20	PLPP6 (ENSCAFG00845002916) #21	SPATA6L (ENSCAFG00845002856) #22	SLC1A1 (ENSCAFG00845002818) #23	GLIS3 (ENSCAFG00845002759) #24	ENSCAFG00845002739	RFX3 (ENSCAFG00845002562) #25	ENSCAFG00845002474	PUM3 (ENSCAFG00845002440) #26	KCNV2 (ENSCAFG00845002424) #27	VLDLR (ENSCAFG00845002345) #28	SMARCA2 (ENSCAFG00845002161) #30	ENSCAFG00845002045	DMRT2 (ENSCAFG00845002026) #31	DMRT3 (ENSCAFG00845002003) #32	DMRT1 (ENSCAFG00845001983) #33	KANK1 (ENSCAFG00845001908) #34	DOCK8 (ENSCAFG00845001647) #35
Dingo	MODERN SPECIES	125	ERMP1 (ENSCAFG00020005183) #10	RIC1 (ENSCAFG00020005108) #11	PDCD1LG2 (ENSCAFG00020005060) #12	CD274 (ENSCAFG00020005055) #13	PLGRKT (ENSCAFG00020005050) #14	ENSCAFG00020005012 #15	INSL6 (ENSCAFG00020005010) #16	JAK2 (ENSCAFG00020001020) #17	ENSCAFG00020000670	ENSCAFG00020000655	RCL1 (ENSCAFG00020000638) #18	ENSCAFG00020000622	ENSCAFG00020000594 #19	CDC37L1 (ENSCAFG00020000516) #20	PLPP6 (ENSCAFG00020000503) #21	SPATA6L (ENSCAFG00020000384) #22	SLC1A1 (ENSCAFG00020000361) #23	GLIS3 (ENSCAFG00020000104) #24	ENSCAFG00020026870	RFX3 (ENSCAFG00020026868) #25	PUM3 (ENSCAFG00020026867) #26	KCNV2 (ENSCAFG00020026866) #27	VLDLR (ENSCAFG00020026865) #28	ENSCAFG00020026863	ENSCAFG00020026802 #30	ENSCAFG00020026766 #30	ENSCAFG00020026759	DMRT2 (ENSCAFG00020026753) #31	DMRT3 (ENSCAFG00020026752) #32	DMRT1 (ENSCAFG00020026750) #33	KANK1 (ENSCAFG00020026742) #34
Red fox	MODERN SPECIES	37	ENSVVUG00000008064	ENSVVUG00000007496	ENSVVUG00000007464	ERMP1 (ENSVVUG00000007447) #10	RIC1 (ENSVVUG00000007409) #11	PDCD1LG2 (ENSVVUG00000007366) #12	PLGRKT (ENSVVUG00000007362) #14	ENSVVUG00000007360 #15	CD274 (ENSVVUG00000007347) #13	INSL6 (ENSVVUG00000007335) #16	JAK2 (ENSVVUG00000007315) #17	RCL1 (ENSVVUG00000007304) #18	AK3 (ENSVVUG00000007282) #19	CDC37L1 (ENSVVUG00000007275) #20	ENSVVUG00000007267 #21	SPATA6L (ENSVVUG00000007223) #22	SLC1A1 (ENSVVUG00000007200) #23	GLIS3 (ENSVVUG00000007122) #24	RFX3 (ENSVVUG00000006609) #25	ENSVVUG00000006545	PUM3 (ENSVVUG00000006527) #26	KCNV2 (ENSVVUG00000006518) #27	ENSVVUG00000006514	VLDLR (ENSVVUG00000004925) #28	ENSVVUG00000004598 #30	ENSVVUG00000004580 #30	DMRT2 (ENSVVUG00000004562) #31	DMRT3 (ENSVVUG00000004555) #32	DMRT1 (ENSVVUG00000004545) #33	KANK1 (ENSVVUG00000004494) #34	DOCK8 (ENSVVUG00000004407) #35
Felidae	ANCESTRAL SPECIES	28	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.g.b	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Panthera	ANCESTRAL SPECIES	34	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
lion	MODERN SPECIES	13	SPTLC1 (ENSPLOG00000011243)	ENSPLOG00000019547	ENSPLOG00000019445	ERMP1 (ENSPLOG00000019376) #10	RIC1 (ENSPLOG00000019269) #11	PDCD1LG2 (ENSPLOG00000019232) #12	CD274 (ENSPLOG00000019211) #13	PLGRKT (ENSPLOG00000019176) #14	ENSPLOG00000019152 #15	INSL6 (ENSPLOG00000019128) #16	JAK2 (ENSPLOG00000019062) #17	RCL1 (ENSPLOG00000019004) #18	AK3 (ENSPLOG00000018913) #19	CDC37L1 (ENSPLOG00000018840) #20	PLPP6 (ENSPLOG00000018812) #21	SPATA6L (ENSPLOG00000018652) #22	SLC1A1 (ENSPLOG00000018538) #23	GLIS3 (ENSPLOG00000018479) #24	RFX3 (ENSPLOG00000018336) #25	ENSPLOG00000018220	PUM3 (ENSPLOG00000018076) #26	KCNV2 (ENSPLOG00000018027) #27	VLDLR (ENSPLOG00000017962) #28	ENSPLOG00000017911	SMARCA2 (ENSPLOG00000017478) #30	DMRT2 (ENSPLOG00000017190) #31	DMRT3 (ENSPLOG00000017150) #32	DMRT1 (ENSPLOG00000017065) #33	KANK1 (ENSPLOG00000016894) #34	DOCK8 (ENSPLOG00000015754) #35	ENSPLOG00000014827 #36
leopard	MODERN SPECIES	42	NFIL3 (ENSPPRG00000019620)	ROR2 (ENSPPRG00000023627)	SPTLC1 (ENSPPRG00000023598)	ENSPPRG00000023237	ERMP1 (ENSPPRG00000023169) #10	RIC1 (ENSPPRG00000022984) #11	PDCD1LG2 (ENSPPRG00000022891) #12	CD274 (ENSPPRG00000022858) #13	PLGRKT (ENSPPRG00000022792) #14	INSL6 (ENSPPRG00000022777) #16	JAK2 (ENSPPRG00000022744) #17	RCL1 (ENSPPRG00000022645) #18	AK3 (ENSPPRG00000000041) #19	CDC37L1 (ENSPPRG00000000059) #20	PLPP6 (ENSPPRG00000019670) #21	SPATA6L (ENSPPRG00000000218) #22	SLC1A1 (ENSPPRG00000000232) #23	GLIS3 (ENSPPRG00000000400) #24	RFX3 (ENSPPRG00000000606) #25	ENSPPRG00000000748	PUM3 (ENSPPRG00000000809) #26	KCNV2 (ENSPPRG00000000862) #27	VLDLR (ENSPPRG00000000915) #28	ENSPPRG00000001027	SMARCA2 (ENSPPRG00000001879) #30	DMRT2 (ENSPPRG00000002109) #31	DMRT3 (ENSPPRG00000002367) #32	DMRT1 (ENSPPRG00000002380) #33	KANK1 (ENSPPRG00000002516) #34	DOCK8 (ENSPPRG00000003143) #35	ENSPPRG00000005315 #36
Tiger	MODERN SPECIES	463				ENSPTIG00000012403	ERMP1 (ENSPTIG00000005202) #10	RIC1 (ENSPTIG00000007073) #11	PDCD1LG2 (ENSPTIG00000013516) #12	CD274 (ENSPTIG00000014398) #13	PLGRKT (ENSPTIG00000015914) #14	ENSPTIG00000016439 #15	INSL6 (ENSPTIG00000016722) #16	JAK2 (ENSPTIG00000016939) #17	RCL1 (ENSPTIG00000019031) #18	AK3 (ENSPTIG00000000703) #19	CDC37L1 (ENSPTIG00000008469) #20	SPATA6L (ENSPTIG00000011794) #22	SLC1A1 (ENSPTIG00000013599) #23	ENSPTIG00000014983	GLIS3 (ENSPTIG00000015969) #24	RFX3 (ENSPTIG00000017617) #25	ENSPTIG00000021167	PUM3 (ENSPTIG00000021934) #26	VLDLR (ENSPTIG00000005593) #28	ENSPTIG00000009737	ENSPTIG00000010794 #30	ENSPTIG00000015817 #30
Cat	MODERN SPECIES	244	ENSFCAG00000021943	ENSFCAG00000046819	ENSFCAG00000021894	ENSFCAG00000047453	ERMP1 (ENSFCAG00000014912) #10	RIC1 (ENSFCAG00000014910) #11	PDCD1LG2 (ENSFCAG00000009048) #12	CD274 (ENSFCAG00000009047) #13	PLGRKT (ENSFCAG00000039638) #14	RLN (ENSFCAG00000011471) #15	INSL6 (ENSFCAG00000044599) #16	JAK2 (ENSFCAG00000028588) #17	RCL1 (ENSFCAG00000014557) #18	AK3 (ENSFCAG00000028063) #19	CDC37L1 (ENSFCAG00000027076) #20	SPATA6L (ENSFCAG00000002369) #22	PLPP6 (ENSFCAG00000038113) #21	SLC1A1 (ENSFCAG00000023590) #23	ENSFCAG00000037557	GLIS3 (ENSFCAG00000046401) #24	RFX3 (ENSFCAG00000012950) #25	ENSFCAG00000013260	KCNV2 (ENSFCAG00000004335) #27	VLDLR (ENSFCAG00000013257) #28	ENSFCAG00000041218	SMARCA2 (ENSFCAG00000001568) #30	DMRT2 (ENSFCAG00000006461) #31	DMRT3 (ENSFCAG00000036847) #32	DMRT1 (ENSFCAG00000006459) #33	KANK1 (ENSFCAG00000006458) #34	DOCK8 (ENSFCAG00000012046) #35
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36	ENSGT00940000163353 #37
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36	ENSGT00940000163353 #37
Greater horseshoe bat	MODERN SPECIES	3	KIAA2026 (ENSRFEG00010013980) #8	MLANA (ENSRFEG00010014270) #9	ERMP1 (ENSRFEG00010014298) #10	RIC1 (ENSRFEG00010014565) #11	PDCD1LG2 (ENSRFEG00010014656) #12	CD274 (ENSRFEG00010014726) #13	PLGRKT (ENSRFEG00010014761) #14	ENSRFEG00010014802	ENSRFEG00010014826 #15	ENSRFEG00010014899 #15	INSL6 (ENSRFEG00010014917) #16	JAK2 (ENSRFEG00010014972) #17	RCL1 (ENSRFEG00010015039) #18	AK3 (ENSRFEG00010015150) #19	CDC37L1 (ENSRFEG00010015324) #20	SPATA6L (ENSRFEG00010005120) #22	PLPP6 (ENSRFEG00010005138) #21	ENSRFEG00010005145	SLC1A1 (ENSRFEG00010005159) #23	GLIS3 (ENSRFEG00010005187) #24	RFX3 (ENSRFEG00010005210) #25	ENSRFEG00010005258	ENSRFEG00010005315 #26	KCNV2 (ENSRFEG00010005355) #27	VLDLR (ENSRFEG00010005438) #28	SMARCA2 (ENSRFEG00010005719) #30	DMRT2 (ENSRFEG00010005950) #31	DMRT3 (ENSRFEG00010006020) #32	DMRT1 (ENSRFEG00010006049) #33	KANK1 (ENSRFEG00010006153) #34	DOCK8 (ENSRFEG00010006288) #35
Microbat	MODERN SPECIES	1067				ERMP1 (ENSMLUG00000002419) #10	RIC1 (ENSMLUG00000002399) #11	PDCD1LG2 (ENSMLUG00000009533) #12	CD274 (ENSMLUG00000009607) #13	PLGRKT (ENSMLUG00000009582) #14	ENSMLUG00000009569 #15	INSL6 (ENSMLUG00000007982) #16	JAK2 (ENSMLUG00000012756) #17	RCL1 (ENSMLUG00000009654) #18	AK3 (ENSMLUG00000017272) #19	CDC37L1 (ENSMLUG00000017270) #20	PLPP6 (ENSMLUG00000017269) #21	SPATA6L (ENSMLUG00000012996) #22	ENSMLUG00000012988 #23	ENSMLUG00000014482 #24	ENSMLUG00000030513 #24	RFX3 (ENSMLUG00000013765) #25	ENSMLUG00000022735	PUM3 (ENSMLUG00000002309) #26	KCNV2 (ENSMLUG00000002304) #27	VLDLR (ENSMLUG00000002294) #28	SMARCA2 (ENSMLUG00000002342) #30
Megabat	MODERN SPECIES	3886												RCL1 (ENSPVAG00000015752) #18	AK3 (ENSPVAG00000015751) #19	CDC37L1 (ENSPVAG00000015750) #20	PLPP6 (ENSPVAG00000015749) #21	SPATA6L (ENSPVAG00000015748) #22	SLC1A1 (ENSPVAG00000015747) #23
Equus	ANCESTRAL SPECIES	37	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00410000028750
Horse	MODERN SPECIES	15	KIAA2026 (ENSECAG00000006216) #8	MLANA (ENSECAG00000009103) #9	ERMP1 (ENSECAG00000018498) #10	RIC1 (ENSECAG00000006558) #11	PDCD1LG2 (ENSECAG00000020578) #12	CD274 (ENSECAG00000016312) #13	PLGRKT (ENSECAG00000051327) #14	PLGRKT (ENSECAG00000015003) #15	INSL6 (ENSECAG00000053846) #16	JAK2 (ENSECAG00000009119) #17	RCL1 (ENSECAG00000015973) #18	ENSECAG00000058759	AK3 (ENSECAG00000011235) #19	CDC37L1 (ENSECAG00000000269) #20	PLPP6 (ENSECAG00000023969) #21	SPATA6L (ENSECAG00000021902) #22	SLC1A1 (ENSECAG00000010935) #23	GLIS3 (ENSECAG00000020544) #24	RFX3 (ENSECAG00000011075) #25	ENSECAG00000009736	PUM3 (ENSECAG00000017193) #26	KCNV2 (ENSECAG00000016602) #27	ENSECAG00000037169	VLDLR (ENSECAG00000021859) #28	ENSECAG00000045647 #30	ENSECAG00000047891 #30	DMRT2 (ENSECAG00000035701) #31	DMRT3 (ENSECAG00000023412) #32	DMRT1 (ENSECAG00000060160) #33	KANK1 (ENSECAG00000016219) #34	DOCK8 (ENSECAG00000011917) #35
Donkey	MODERN SPECIES	15	IL33 (ENSEASG00005010691)	ENSEASG00005029347	KIAA2026 (ENSEASG00005010685) #8	MLANA (ENSEASG00005028588) #9	ERMP1 (ENSEASG00005010680) #10	RIC1 (ENSEASG00005010673) #11	PDCD1LG2 (ENSEASG00005010667) #12	CD274 (ENSEASG00005010663) #13	PLGRKT (ENSEASG00005034012) #14	ENSEASG00005010659 #15	INSL6 (ENSEASG00005037792) #16	JAK2 (ENSEASG00005010656) #17	RCL1 (ENSEASG00005010653) #18	AK3 (ENSEASG00005010651) #19	CDC37L1 (ENSEASG00005010646) #20	SPATA6L (ENSEASG00005010642) #22	PLPP6 (ENSEASG00005010645) #21	SLC1A1 (ENSEASG00005010637) #23	GLIS3 (ENSEASG00005010634) #24	RFX3 (ENSEASG00005010402) #25	ENSEASG00005010358	ENSEASG00005010361	PUM3 (ENSEASG00005010350) #26	KCNV2 (ENSEASG00005010348) #27	VLDLR (ENSEASG00005010330) #28	ENSEASG00005010323	ENSEASG00005033232 #30	ENSEASG00005032228 #30	DMRT2 (ENSEASG00005010307) #31	DMRT3 (ENSEASG00005010303) #32	DMRT1 (ENSEASG00005010297) #33
Eulipotyphla	ANCESTRAL SPECIES	775														ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22
Common shrew	MODERN SPECIES	598														AK3 (ENSSARG00000004598) #19	CDC37L1 (ENSSARG00000004588) #20	SPATA6L (ENSSARG00000004566) #22
Hedgehog	MODERN SPECIES	1008																ENSEEUG00000000690 #22
Atlantogenata	ANCESTRAL SPECIES	68	ENSGT00940000162767 #7	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36	ENSGT00940000163353 #37
Xenarthra	ANCESTRAL SPECIES	76	ENSGT00940000163110	ENSGT00390000005185	ENSGT00390000011483 #8	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434.a #15	ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30
Sloth	MODERN SPECIES	780														CDC37L1 (ENSCHOG00000002962) #20	PLPP6 (ENSCHOG00000002960) #21	ENSCHOG00000002951 #22
Armadillo	MODERN SPECIES	1454	KIAA2026 (ENSDNOG00000048191) #8	ERMP1 (ENSDNOG00000015251) #10	RIC1 (ENSDNOG00000042438) #11	ENSDNOG00000034768	ENSDNOG00000036232	PDCD1LG2 (ENSDNOG00000031933) #12	CD274 (ENSDNOG00000018655) #13	ENSDNOG00000042926 #14	ENSDNOG00000036090 #15	ENSDNOG00000001668 #16	JAK2 (ENSDNOG00000008173) #17	RCL1 (ENSDNOG00000019911) #18	AK3 (ENSDNOG00000038787) #19	CDC37L1 (ENSDNOG00000015975) #20	PLPP6 (ENSDNOG00000015974) #21	SPATA6L (ENSDNOG00000038916) #22	SLC1A1 (ENSDNOG00000001798) #23	ENSDNOG00000042157	ENSDNOG00000035748 #24	ENSDNOG00000042655	ENSDNOG00000012636 #24	RFX3 (ENSDNOG00000018668) #25	PUM3 (ENSDNOG00000008157) #26	KCNV2 (ENSDNOG00000041737) #27	VLDLR (ENSDNOG00000001086) #28	SMARCA2 (ENSDNOG00000006402) #30	ENSDNOG00000040306	ST8SIA4 (ENSDNOG00000046147)
Afrotheria	ANCESTRAL SPECIES	145										ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896.m #24	ENSGT00940000156896.n #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Tenrec	MODERN SPECIES	986															PLPP6 (ENSETEG00000016395) #21	ENSETEG00000016390 #22
Afrotheria_a	ANCESTRAL SPECIES	145										ENSGT00940000154434.b #16	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907 #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00900000143153	ENSGT00940000156896.m #24	ENSGT00940000156896.n #24	ENSGT01050000244879.a.a.b #25	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Hyrax	MODERN SPECIES	720																ENSPCAG00000009775 #22
Elephant	MODERN SPECIES	593	SLC2A6 (ENSLAFG00000005401)	CACFD1 (ENSLAFG00000005395)	ADAMTS13 (ENSLAFG00000011278)	REXO4 (ENSLAFG00000011274)	STKLD1 (ENSLAFG00000008238)	ENSLAFG00000016963	ENSLAFG00000006436	MED22 (ENSLAFG00000002513)	SURF6 (ENSLAFG00000026419)	ABO (ENSLAFG00000010293)	INSL6 (ENSLAFG00000007479) #16	JAK2 (ENSLAFG00000007471) #17	RCL1 (ENSLAFG00000017495) #18	AK3 (ENSLAFG00000001126) #19	CDC37L1 (ENSLAFG00000001125) #20	SPATA6L (ENSLAFG00000001121) #22	PLPP6 (ENSLAFG00000001123) #21	SLC1A1 (ENSLAFG00000001120) #23	ENSLAFG00000026125	ENSLAFG00000029971 #24	ENSLAFG00000031654 #24	RFX3 (ENSLAFG00000021602) #25	PUM3 (ENSLAFG00000017341) #26	KCNV2 (ENSLAFG00000017292) #27	VLDLR (ENSLAFG00000015211) #28	SMARCA2 (ENSLAFG00000014061) #30	DMRT2 (ENSLAFG00000008510) #31	DMRT3 (ENSLAFG00000028125) #32	ENSLAFG00000010638 #33	ENSLAFG00000031278 #34	ENSLAFG00000010633 #34
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907.a #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907.a #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907.a #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00960000187477	ENSGT00940000161884
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00940000160907.a #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757.w #26	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884.b	ENSGT00940000161466
koala	MODERN SPECIES	113	UHRF2 (ENSPCIG00000009528)	KIAA2026 (ENSPCIG00000016666) #8	MLANA (ENSPCIG00000016664) #9	ERMP1 (ENSPCIG00000000514) #10	RIC1 (ENSPCIG00000000440) #11	ENSPCIG00000000400 #12	ENSPCIG00000000358	ENSPCIG00000000288 #13	PLGRKT (ENSPCIG00000008213) #14	ENSPCIG00000034412 #15	ENSPCIG00000036019 #15	JAK2 (ENSPCIG00000000252) #17	RCL1 (ENSPCIG00000000188) #18	ENSPCIG00000000144 #19	CDC37L1 (ENSPCIG00000000083) #20	ENSPCIG00000035241 #22	ENSPCIG00000025428 #21	ENSPCIG00000025425 #21	SLC1A1 (ENSPCIG00000001803) #23	ENSPCIG00000032109 #24	ENSPCIG00000024086 #24	RFX3 (ENSPCIG00000024087) #25	ENSPCIG00000030606	PUM3 (ENSPCIG00000030598) #26	ENSPCIG00000030552	ENSPCIG00000030550	NTN3 (ENSPCIG00000030549)	TBC1D24 (ENSPCIG00000030548)	AMDHD2 (ENSPCIG00000030546)	ENSPCIG00000030545	ENSPCIG00000031802
Common wonbat	MODERN SPECIES	1009	ENSVURG00010005615	KDM4C (ENSVURG00010005641)	GLDC (ENSVURG00010005739)	UHRF2 (ENSVURG00010006652)	KIAA2026 (ENSVURG00010006687) #8	MLANA (ENSVURG00010006707) #9	ERMP1 (ENSVURG00010006720) #10	RIC1 (ENSVURG00010006750) #11	CD274 (ENSVURG00010006794) #13	PLGRKT (ENSVURG00010006799) #14	JAK2 (ENSVURG00010006805) #17	RCL1 (ENSVURG00010006818) #18	AK3 (ENSVURG00010006826) #19	CDC37L1 (ENSVURG00010006832) #20	PLPP6 (ENSVURG00010006844) #21	ENSVURG00010006853 #22	SLC1A1 (ENSVURG00010006864) #23	GLIS3 (ENSVURG00010006895) #24	RFX3 (ENSVURG00010006911) #25	ENSVURG00010006948 #26	ENSVURG00010006968	ENSVURG00010006992	NTN3 (ENSVURG00010007004)	TBC1D24 (ENSVURG00010007018)	ENSVURG00010007067	AMDHD2 (ENSVURG00010007093)	ENSVURG00010007136	ENSVURG00010007142	ZNF316 (ENSVURG00010007148)	ZKSCAN2 (ENSVURG00010007162)	ENSVURG00010007173
Wallaby	MODERN SPECIES	1644																ENSMEUG00000011917 #22
Tasmanian devil	MODERN SPECIES		UHRF2 (ENSSHAG00000023237)	ENSSHAG00000031943	KIAA2026 (ENSSHAG00000030776) #8	MLANA (ENSSHAG00000006138) #9	ERMP1 (ENSSHAG00000004720) #10	RIC1 (ENSSHAG00000000924) #11	ENSSHAG00000004176 #12	CD274 (ENSSHAG00000002682) #13	PLGRKT (ENSSHAG00000001757) #14	ENSSHAG00000015262 #15	JAK2 (ENSSHAG00000014900) #17	RCL1 (ENSSHAG00000014086) #18	ENSSHAG00000029924	AK3 (ENSSHAG00000028635) #19	CDC37L1 (ENSSHAG00000013393) #20	ENSSHAG00000012947 #22	PLPP6 (ENSSHAG00000026797) #21	SLC1A1 (ENSSHAG00000012371) #23	GLIS3 (ENSSHAG00000030971) #24	ENSSHAG00000028825	RFX3 (ENSSHAG00000003775) #25	ENSSHAG00000002395	ENSSHAG00000003730 #26	ENSSHAG00000000892	ENSSHAG00000031126	ENSSHAG00000025501	ENSSHAG00000014430	ATP6V0C (ENSSHAG00000014251)	ENSSHAG00000027414	ENSSHAG00000013445	ENSSHAG00000013237
Opossum	MODERN SPECIES	5	KIAA2026 (ENSMODG00000015293) #8	MLANA (ENSMODG00000015296) #9	ERMP1 (ENSMODG00000015324) #10	RIC1 (ENSMODG00000015344) #11	ENSMODG00000015349 #12	ENSMODG00000015352 #13	PLGRKT (ENSMODG00000015353) #14	RFLB (ENSMODG00000048062) #15	JAK2 (ENSMODG00000015373) #17	RCL1 (ENSMODG00000015377) #18	ENSMODG00000029481	AK3 (ENSMODG00000042741) #19	CDC37L1 (ENSMODG00000015385) #20	ENSMODG00000022953 #21	ENSMODG00000051594 #21	ENSMODG00000025440 #22	SLC1A1 (ENSMODG00000015399) #23	ENSMODG00000045366	GLIS3 (ENSMODG00000015403) #24	ENSMODG00000044455	ENSMODG00000039449	RFX3 (ENSMODG00000015410) #25	ENSMODG00000015412	PUM3 (ENSMODG00000015417) #26	PBK (ENSMODG00000015425)	ENSMODG00000015420	ENSMODG00000015432	NTN3 (ENSMODG00000015434)	TBC1D24 (ENSMODG00000015436)	ENSMODG00000042495	AMDHD2 (ENSMODG00000015443)
Platypus	MODERN SPECIES	88	GLDC (ENSOANG00000041168)	UHRF2 (ENSOANG00000001083)	KIAA2026 (ENSOANG00000015760) #8	MLANA (ENSOANG00000036136) #9	ERMP1 (ENSOANG00000010083) #10	RIC1 (ENSOANG00000010088) #11	ENSOANG00000010090 #12	CD274 (ENSOANG00000010091) #13	PLGRKT (ENSOANG00000013191) #14	ENSOANG00000031851 #15	JAK2 (ENSOANG00000010092) #17	RCL1 (ENSOANG00000013193) #18	AK3 (ENSOANG00000001505) #19	ENSOANG00000049559	CDC37L1 (ENSOANG00000001511) #20	ENSOANG00000036739 #22	ENSOANG00000039420 #21	SLC1A1 (ENSOANG00000013192) #23	GLIS3 (ENSOANG00000014997) #24	RFX3 (ENSOANG00000014996) #25	ENSOANG00000043031	PUM3 (ENSOANG00000014995) #26	KCNV2 (ENSOANG00000014994) #27	VLDLR (ENSOANG00000014993) #28	SMARCA2 (ENSOANG00000008299) #30	ENSOANG00000008297	DMRT2 (ENSOANG00000008296) #31	DMRT3 (ENSOANG00000008295) #32	DMRT1 (ENSOANG00000036834) #33	KANK1 (ENSOANG00000008293) #34	DOCK8 (ENSOANG00000044143) #35
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00950000185125
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00530000063839.f #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36
Elapidae_a	ANCESTRAL SPECIES	101	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00530000063839.f #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33
Blue-lipped sea krait	MODERN SPECIES	4192														AK3 (ENSLLTG00000012784) #19	CDC37L1 (ENSLLTG00000012778) #20	SPATA6L (ENSLLTG00000012755) #22	SLC1A1 (ENSLLTG00000012737) #23	ENSLLTG00000012730
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00530000063839.f #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876.m #35	ENSGT00950000185125	ENSGT00640000091523 #36
Mainland tiger snake	MODERN SPECIES	1	ENSNSUG00000020021	KDM4C (ENSNSUG00000019947)	GLDC (ENSNSUG00000019946)	UHRF2 (ENSNSUG00000019944)	KIAA2026 (ENSNSUG00000019940) #8	ENSNSUG00000019939 #10	ENSNSUG00000019938 #10	RIC1 (ENSNSUG00000019937) #11	PDCD1LG2 (ENSNSUG00000019936) #12	PLGRKT (ENSNSUG00000019935) #14	JAK2 (ENSNSUG00000019934) #17	ENSNSUG00000019932 #18	ENSNSUG00000019931 #18	AK3 (ENSNSUG00000019930) #19	CDC37L1 (ENSNSUG00000019929) #20	SPATA6L (ENSNSUG00000019928) #22	SLC1A1 (ENSNSUG00000019926) #23	GLIS3 (ENSNSUG00000019925) #24	RFX3 (ENSNSUG00000019919) #25	ENSNSUG00000019918	PUM3 (ENSNSUG00000019917) #26	KCNV2 (ENSNSUG00000019916) #27	VLDLR (ENSNSUG00000019901) #28	SMARCA2 (ENSNSUG00000018108) #30	DMRT2 (ENSNSUG00000018057) #31	DMRT3 (ENSNSUG00000018056) #32	DMRT1 (ENSNSUG00000018051) #33	KANK1 (ENSNSUG00000018050) #34	DOCK8 (ENSNSUG00000018049) #35	ENSNSUG00000018048	ENSNSUG00000018047
Lizard	MODERN SPECIES	1	GLDC (ENSACAG00000004393)	ENSACAG00000044974	UHRF2 (ENSACAG00000004142)	KIAA2026 (ENSACAG00000004132) #8	MLANA (ENSACAG00000004131) #9	ERMP1 (ENSACAG00000004052) #10	RIC1 (ENSACAG00000003988) #11	PDCD1LG2 (ENSACAG00000029075) #12	PLGRKT (ENSACAG00000003966) #14	ENSACAG00000024061 #15	ENSACAG00000042874	JAK2 (ENSACAG00000003673) #17	RCL1 (ENSACAG00000003640) #18	AK3 (ENSACAG00000003605) #19	CDC37L1 (ENSACAG00000003578) #20	SPATA6L (ENSACAG00000029209) #22	ENSACAG00000043625	SLC1A1 (ENSACAG00000003433) #23	ENSACAG00000036408	GLIS3 (ENSACAG00000003374) #24	RFX3 (ENSACAG00000003262) #25	ENSACAG00000035469	ENSACAG00000003227	PUM3 (ENSACAG00000003174) #26	KCNV2 (ENSACAG00000003138) #27	VLDLR (ENSACAG00000003015) #28	SMARCA2 (ENSACAG00000002423) #30	DMRT2 (ENSACAG00000002411) #31	DMRT3 (ENSACAG00000002401) #32	DMRT1 (ENSACAG00000002356) #33	KANK1 (ENSACAG00000002270) #34
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23
Common wall lizard	MODERN SPECIES	8	KDM4C (ENSPMRG00000020731)	GLDC (ENSPMRG00000020751)	UHRF2 (ENSPMRG00000020766)	KIAA2026 (ENSPMRG00000020779) #8	MLANA (ENSPMRG00000020786) #9	ERMP1 (ENSPMRG00000020796) #10	RIC1 (ENSPMRG00000020809) #11	PDCD1LG2 (ENSPMRG00000020831) #12	PLGRKT (ENSPMRG00000020836) #14	ENSPMRG00000020840 #15	JAK2 (ENSPMRG00000020898) #17	RCL1 (ENSPMRG00000021189) #18	AK3 (ENSPMRG00000021204) #19	CDC37L1 (ENSPMRG00000021219) #20	ENSPMRG00000021237	SPATA6L (ENSPMRG00000021247) #22	SLC1A1 (ENSPMRG00000021278) #23	ACO1 (ENSPMRG00000021323)	RIGI (ENSPMRG00000021389)	TOPORS (ENSPMRG00000021472)	NDUFB6 (ENSPMRG00000021478)	ENSPMRG00000021492	TMEM215 (ENSPMRG00000021506)	LPAR1 (ENSPMRG00000021509)	MUSK (ENSPMRG00000021520)	SVEP1 (ENSPMRG00000021582)	TXNDC8 (ENSPMRG00000021737)	TXN (ENSPMRG00000021752)	PTGR1 (ENSPMRG00000021759)	ENSPMRG00000021777	SMC2 (ENSPMRG00000021801)
Argentine black and white tegu	MODERN SPECIES	25	ENSSMRG00000012379	RFX3 (ENSSMRG00000012376) #25	GLIS3 (ENSSMRG00000012362) #24	ENSSMRG00000012349	KIAA2026 (ENSSMRG00000012326) #8	MLANA (ENSSMRG00000012325) #9	ERMP1 (ENSSMRG00000012324) #10	RIC1 (ENSSMRG00000012320) #11	PDCD1LG2 (ENSSMRG00000012319) #12	PLGRKT (ENSSMRG00000012308) #14	ENSSMRG00000012307 #15	JAK2 (ENSSMRG00000012306) #17	RCL1 (ENSSMRG00000012305) #18	AK3 (ENSSMRG00000012300) #19	CDC37L1 (ENSSMRG00000012299) #20	SPATA6L (ENSSMRG00000012298) #22	SLC1A1 (ENSSMRG00000012291) #23
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a #34
Archosauria	ANCESTRAL SPECIES	31	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35
Australian saltwater crocodile	MODERN SPECIES	67	PTPRD (ENSCPRG00005003783)	KDM4C (ENSCPRG00005003854)	GLDC (ENSCPRG00005003953)	UHRF2 (ENSCPRG00005004283)	KIAA2026 (ENSCPRG00005004297) #8	ERMP1 (ENSCPRG00005004304) #10	RIC1 (ENSCPRG00005004338) #11	PDCD1LG2 (ENSCPRG00005004350) #12	ENSCPRG00005004356 #12	PLGRKT (ENSCPRG00005004366) #14	ENSCPRG00005004371 #15	JAK2 (ENSCPRG00005004373) #17	RCL1 (ENSCPRG00005004387) #18	AK3 (ENSCPRG00005004395) #19	CDC37L1 (ENSCPRG00005004396) #20	SPATA6L (ENSCPRG00005004407) #22	SLC1A1 (ENSCPRG00005004424) #23	GLIS3 (ENSCPRG00005004466) #24	RFX3 (ENSCPRG00005004493) #25	ENSCPRG00005004519	PUM3 (ENSCPRG00005004547) #26	KCNV2 (ENSCPRG00005004751) #27	VLDLR (ENSCPRG00005004758) #28	ENSCPRG00005004774	SMARCA2 (ENSCPRG00005004803) #30	DMRT2 (ENSCPRG00005004868) #31	DMRT3 (ENSCPRG00005004879) #32	DMRT1 (ENSCPRG00005004893) #33	KANK1 (ENSCPRG00005004939) #34	DOCK8 (ENSCPRG00005004968) #35	ENSCPRG00005005028 #36
Aves	ANCESTRAL SPECIES	45	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b.e #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00950000185125
African ostrich	MODERN SPECIES	535											PLGRKT (ENSSCUG00000004547) #14	JAK2 (ENSSCUG00000004554) #17	RCL1 (ENSSCUG00000004564) #18	AK3 (ENSSCUG00000004569) #19	ENSSCUG00000004577 #20	SPATA6L (ENSSCUG00000004585) #22	SLC1A1 (ENSSCUG00000004590) #23	TOPORS (ENSSCUG00000004599)
Cryptodira	ANCESTRAL SPECIES	48			ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00940000154886.a.a #34	ENSGT00950000185504
Chinese turtle	MODERN SPECIES	475					KIAA2026 (ENSPSIG00000005276) #8	MLANA (ENSPSIG00000005246) #9	ENSPSIG00000017249	ERMP1 (ENSPSIG00000015685) #10	RIC1 (ENSPSIG00000015494) #11	CD274 (ENSPSIG00000015064) #13	PLGRKT (ENSPSIG00000015021) #14	JAK2 (ENSPSIG00000012878) #17	RCL1 (ENSPSIG00000012302) #18	AK3 (ENSPSIG00000011687) #19	CDC37L1 (ENSPSIG00000010470) #20	ENSPSIG00000010075 #22	SLC1A1 (ENSPSIG00000007272) #23	GLIS3 (ENSPSIG00000005966) #24
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00940000154886.a.a #34	ENSGT00950000185504
Emydidae	ANCESTRAL SPECIES	20	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531 #9	ENSGT00940000164450	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00960000189645	ENSGT00940000154886.a.a #34	ENSGT00950000185504	ENSGT00940000155876 #35
Three-toed box turtle	MODERN SPECIES	50	UBQLN1 (ENSTMTG00000017089)	IDNK (ENSTMTG00000017082)	FRMD3 (ENSTMTG00000016969)	ENSTMTG00000016945 #9	ENSTMTG00000016905	ERMP1 (ENSTMTG00000016873) #10	RIC1 (ENSTMTG00000016776) #11	PDCD1LG2 (ENSTMTG00000016752) #12	CD274 (ENSTMTG00000016745) #13	PLGRKT (ENSTMTG00000016710) #14	ENSTMTG00000016706 #15	JAK2 (ENSTMTG00000016660) #17	RCL1 (ENSTMTG00000016634) #18	AK3 (ENSTMTG00000016623) #19	CDC37L1 (ENSTMTG00000016607) #20	SPATA6L (ENSTMTG00000016584) #22	SLC1A1 (ENSTMTG00000016551) #23	GLIS3 (ENSTMTG00000016537) #24	RFX3 (ENSTMTG00000016347) #25	ENSTMTG00000016298	PUM3 (ENSTMTG00000016264) #26	KCNV2 (ENSTMTG00000016251) #27	VLDLR (ENSTMTG00000016110) #28	SMARCA2 (ENSTMTG00000016037) #30	DMRT2 (ENSTMTG00000016004) #31	DMRT3 (ENSTMTG00000015991) #32	DMRT1 (ENSTMTG00000015977) #33	ENSTMTG00000015959	KANK1 (ENSTMTG00000015933) #34	ENSTMTG00000015924	DOCK8 (ENSTMTG00000006799) #35
painted turtle	MODERN SPECIES	15	UBQLN1 (ENSCPBG00000025496)	IDNK (ENSCPBG00000025495)	FRMD3 (ENSCPBG00000025494)	ENSCPBG00000025493 #9	ENSCPBG00000025492	ERMP1 (ENSCPBG00000025490) #10	RIC1 (ENSCPBG00000025489) #11	PDCD1LG2 (ENSCPBG00000025487) #12	CD274 (ENSCPBG00000025486) #13	PLGRKT (ENSCPBG00000025485) #14	ENSCPBG00000025484 #15	JAK2 (ENSCPBG00000025483) #17	RCL1 (ENSCPBG00000025481) #18	AK3 (ENSCPBG00000025480) #19	CDC37L1 (ENSCPBG00000025479) #20	SPATA6L (ENSCPBG00000025478) #22	SLC1A1 (ENSCPBG00000025475) #23	GLIS3 (ENSCPBG00000025474) #24	RFX3 (ENSCPBG00000025473) #25	ENSCPBG00000025471	PUM3 (ENSCPBG00000025470) #26	KCNV2 (ENSCPBG00000025469) #27	VLDLR (ENSCPBG00000025468) #28	SMARCA2 (ENSCPBG00000025463) #30	DMRT2 (ENSCPBG00000025462) #31	DMRT3 (ENSCPBG00000025461) #32	DMRT1 (ENSCPBG00000025458) #33	KANK1 (ENSCPBG00000025457) #34	ENSCPBG00000025452	DOCK8 (ENSCPBG00000025439) #35	ENSCPBG00000025429 #36
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00940000161430 #13	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00950000186013	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757.c #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a.ib #34	ENSGT00940000155876 #35	ENSGT00950000185125
Abingdon island giant tortoise	MODERN SPECIES	46				FRMD3 (ENSCABG00000004752)	MLANA (ENSCABG00000004750) #9	ERMP1 (ENSCABG00000004749) #10	RIC1 (ENSCABG00000004424) #11	PDCD1LG2 (ENSCABG00000004409) #12	CD274 (ENSCABG00000004333) #13	PLGRKT (ENSCABG00000004330) #14	ENSCABG00000004329 #15	JAK2 (ENSCABG00000000622) #17	RCL1 (ENSCABG00000000189) #18	AK3 (ENSCABG00000000145) #19	CDC37L1 (ENSCABG00000000093) #20	ENSCABG00000000071 #22
Goode s thornscrub tortoise	MODERN SPECIES	20	GKAP1 (ENSGEVG00005017882)	UBQLN1 (ENSGEVG00005017836)	IDNK (ENSGEVG00005017811)	FRMD3 (ENSGEVG00005017673)	MLANA (ENSGEVG00005017623) #9	ERMP1 (ENSGEVG00005017610) #10	RIC1 (ENSGEVG00005017573) #11	PDCD1LG2 (ENSGEVG00005017549) #12	CD274 (ENSGEVG00005017525) #13	PLGRKT (ENSGEVG00005017508) #14	ENSGEVG00005017487 #15	JAK2 (ENSGEVG00005017459) #17	RCL1 (ENSGEVG00005017434) #18	AK3 (ENSGEVG00005017423) #19	CDC37L1 (ENSGEVG00005017405) #20	SPATA6L (ENSGEVG00005017368) #22	SLC1A1 (ENSGEVG00005017274) #23	ENSGEVG00005017260	GLIS3 (ENSGEVG00005017217) #24	RFX3 (ENSGEVG00005017166) #25	ENSGEVG00005017017	ENSGEVG00005016771 #26	KCNV2 (ENSGEVG00005016696) #27	SMARCA2 (ENSGEVG00005015950) #30	DMRT2 (ENSGEVG00005015890) #31	DMRT3 (ENSGEVG00005015865) #32	DMRT1 (ENSGEVG00005015585) #33	KANK1 (ENSGEVG00005015437) #34	DOCK8 (ENSGEVG00005015343) #35	ENSGEVG00005015265 #36	PGM5 (ENSGEVG00005014982)
Anura	ANCESTRAL SPECIES	29	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483 #8	ENSGT00390000009531 #9	ENSGT00530000063839 #10	ENSGT00390000002955 #11	ENSGT00940000161373 #12	ENSGT00390000000375 #14	ENSGT00940000154434 #15	ENSGT00940000155640 #17	ENSGT00530000063404.a #18	ENSGT00940000155120 #19	ENSGT00390000013443.d #20	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00940000156896 #24	ENSGT01050000244879.a.a.b #25	ENSGT00940000164013	ENSGT00390000015757 #26	ENSGT00940000157438 #27	ENSGT00940000155460 #28	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #31	ENSGT00940000160420 #32	ENSGT00940000156489 #33	ENSGT00940000154886.a.a #34	ENSGT00940000155876 #35	ENSGT00640000091523 #36	ENSGT00940000164556
Frog	MODERN SPECIES		gldc (ENSXETG00000000543)	uhrf2 (ENSXETG00000000567)	kiaa2026 (ENSXETG00000000574) #8	fxn (ENSXETG00000039175)	mlana (ENSXETG00000037374) #9	ermp1 (ENSXETG00000000577) #10	ric1 (ENSXETG00000000582) #11	pdcd1lg2 (ENSXETG00000040791) #12	ENSXETG00000036720 #12	plgrkt (ENSXETG00000000587) #14	jak2 (ENSXETG00000000586) #17	ENSXETG00000042090	rcl1 (ENSXETG00000000592) #18	ak3 (ENSXETG00000000588) #19	cdc37l1 (ENSXETG00000000595) #20	spata6l (ENSXETG00000030483) #22	slc1a1 (ENSXETG00000011685) #23	glis3 (ENSXETG00000011692) #24	rfx3 (ENSXETG00000011698) #25	crygbl.2 (ENSXETG00000048659)	carm1p1 (ENSXETG00000036672)	pum3 (ENSXETG00000011707) #26	kcnv2 (ENSXETG00000011708) #27	vldlr (ENSXETG00000011709) #28	smarca2 (ENSXETG00000015299) #30	dmrt2 (ENSXETG00000033983) #31	dmrt3 (ENSXETG00000015285) #32	dmrt1 (ENSXETG00000002277) #33	kank1 (ENSXETG00000002278) #34	dock8 (ENSXETG00000001648) #35	cbwd2 (ENSXETG00000001656) #36
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000001734	ENSLLEG00000001719	ERMP1 (ENSLLEG00000001621) #10	RIC1 (ENSLLEG00000001526) #11	ENSLLEG00000001500	PDCD1LG2 (ENSLLEG00000001467) #12	ENSLLEG00000001414 #12	PLGRKT (ENSLLEG00000001384) #14	ENSLLEG00000001371 #15	JAK2 (ENSLLEG00000001323) #17	ENSLLEG00000001296	RCL1 (ENSLLEG00000001251) #18	ENSLLEG00000001238	AK3 (ENSLLEG00000001204) #19	CDC37L1 (ENSLLEG00000001174) #20	SPATA6L (ENSLLEG00000001082) #22	SLC1A1 (ENSLLEG00000001013) #23	ENSLLEG00000000928	GLIS3 (ENSLLEG00000000897) #24	ENSLLEG00000000876	ENSLLEG00000000868	RFX3 (ENSLLEG00000000718) #25	PUM3 (ENSLLEG00000000665) #26	KCNV2 (ENSLLEG00000000652) #27	VLDLR (ENSLLEG00000000597) #28	ENSLLEG00000000580	SMARCA2 (ENSLLEG00000000350) #30	ENSLLEG00000000280	ENSLLEG00000000269	ENSLLEG00000000229	DMRT2 (ENSLLEG00000000206) #31
Coelacanth	MODERN SPECIES	705													si:dkey-3h3.3 (ENSLACG00000003908)	AK3 (ENSLACG00000004544) #19	CDC37L1 (ENSLACG00000005200) #20	SPATA6L (ENSLACG00000022591) #22	SLC1A1 (ENSLACG00000007779) #23	ENSLACG00000010250	GLIS3 (ENSLACG00000011383) #24	ENSLACG00000011838
Actinopterygii	ANCESTRAL SPECIES	376																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a	ENSGT00940000154194.c.a	ENSGT00940000154194.c.b	ENSGT00940000158205	ENSGT00940000164379	ENSGT00940000164529
Neopterygii	ANCESTRAL SPECIES	112	ENSGT00940000155527	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #23	ENSGT00390000014293.a	ENSGT00940000161376
Osteoglossocephalai	ANCESTRAL SPECIES	209														ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00730000110920.b.a.b	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000007252.c	ENSGT00940000154949.b
Osteoglossiformes	ANCESTRAL SPECIES	103						ENSGT00940000157235.g	ENSGT00940000160460	ENSGT00950000183137.b.a.e	ENSGT00940000155800.a.b.a	ENSGT00390000015958.d	ENSGT00940000165054.A	ENSGT00940000157294.d.a	ENSGT00390000007332	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a.g	ENSGT00940000155429.a.a.e	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00940000154404.b.e.b	ENSGT00730000110920.b.a.b	ENSGT00940000158215.i	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140
Asian bonytongue	MODERN SPECIES	20	USP53 (ENSSFOG00015018293)	myoz2a (ENSSFOG00015018331)	SYNPO2 (ENSSFOG00015032764)	ENSSFOG00015018368	KCNIP4 (ENSSFOG00015018405)	ADGRA3 (ENSSFOG00015018468)	gba3 (ENSSFOG00015018516)	PPARGC1A (ENSSFOG00015018522)	dhx15 (ENSSFOG00015018549)	ccdc149a (ENSSFOG00015018593)	ENSSFOG00015025930	lgi2a (ENSSFOG00015018648)	sepsecs (ENSSFOG00015030052)	ENSSFOG00015018699	trmt10a (ENSSFOG00015018710)	spata6l (ENSSFOG00015018726) #22	slc1a1 (ENSSFOG00015018753) ##23	RAP1GDS1 (ENSSFOG00015018811)	tspan5a (ENSSFOG00015018876)	ENSSFOG00015018901	frem1a (ENSSFOG00015018913)	ACO1 (ENSSFOG00015018941)	ENSSFOG00015019048	ppp1r15a (ENSSFOG00015019060)	ENSSFOG00015019067	ENSSFOG00015019098	haus6 (ENSSFOG00015019236)	plin2 (ENSSFOG00015019287)	larp7 (ENSSFOG00015019344)	ENSSFOG00015019358	ENSSFOG00015028094
P. kingsleyae	MODERN SPECIES	182																spata6l (ENSPKIG00000022918) #22	slc1a1 (ENSPKIG00000022951) ##23	RAP1GDS1 (ENSPKIG00000023019)	tspan5a (ENSPKIG00000023070)	ENSPKIG00000023099	frem1a (ENSPKIG00000023122)	ACO1 (ENSPKIG00000023168)	ENSPKIG00000023206	ACER2 (ENSPKIG00000023221)	ENSPKIG00000023249	ENSPKIG00000023299	haus6 (ENSPKIG00000023404)	plin2 (ENSPKIG00000023455)	larp7 (ENSPKIG00000023484)	ENSPKIG00000023525	ENSPKIG00000023540
Clupeocephala	ANCESTRAL SPECIES	208														ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000158215	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000007252.c	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	183	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	222										ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005008834	ing2 (ENSMMDG00005008832)	ENSMMDG00005008830	rwdd (ENSMMDG00005008826)	ENSMMDG00005008824	ENSMMDG00005008709	ENSMMDG00005008697	ENSMMDG00005008692	H2AZ1 (ENSMMDG00005008655)	mllt3 (ENSMMDG00005008643)	ENSMMDG00005008623	hacd4 (ENSMMDG00005008613)	C4orf54 (ENSMMDG00005008610)	trmt10a (ENSMMDG00005008608)	ENSMMDG00005008607	ENSMMDG00005008605 #22	slc1a1 (ENSMMDG00005008604) ##23	RAP1GDS1 (ENSMMDG00005008038)	tspan5a (ENSMMDG00005008023)	ENSMMDG00005008019	ENSMMDG00005008015	URGCP (ENSMMDG00005008014)	pop7 (ENSMMDG00005008010)	epoa (ENSMMDG00005008007)	ENSMMDG00005008003	ufsp1 (ENSMMDG00005008000)	ENSMMDG00005007997	ENSMMDG00005007994	ENSMMDG00005007990	GIGYF1 (ENSMMDG00005007983)	wrap53 (ENSMMDG00005007878)
Percomorphaceae	ANCESTRAL SPECIES	39	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Pomacentridae	ANCESTRAL SPECIES	127	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000159769.a.a.g.a	ENSGT00940000155279.C.a.a	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b	ENSGT00390000004396.h	ENSGT00940000156171.h	ENSGT00940000157587.l	ENSGT00390000015089	ENSGT00390000013722
Amphiprion	ANCESTRAL SPECIES	82	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00940000181321	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b	ENSGT00390000004396.h	ENSGT00940000156171.h	ENSGT00940000157587.l	ENSGT00390000015089	ENSGT00390000013722
Clown anemonefish	MODERN SPECIES	2512									csnk1g2a (ENSAOCG00000009054)	mrpl37 (ENSAOCG00000009023)	ACOT11 (ENSAOCG00000009002)	ENSAOCG00000008977	C4orf54 (ENSAOCG00000008964)	ENSAOCG00000008942	trmt10a (ENSAOCG00000008931)	ENSAOCG00000008901 #22	slc1a1 (ENSAOCG00000008874) ##23	RAP1GDS1 (ENSAOCG00000008813)	TSPAN5 (ENSAOCG00000008728)	ENSAOCG00000008691	frem1a (ENSAOCG00000008671)	ENSAOCG00000001905
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000015592	AFAP1 (ENSAPEG00000015549)	ABLIM2 (ENSAPEG00000015498)	ENSAPEG00000015472	zcchc4 (ENSAPEG00000015422)	ENSAPEG00000015356	pde5ab (ENSAPEG00000015273)	mad2l1 (ENSAPEG00000015250)	ARSJ (ENSAPEG00000015214)	camk2d1 (ENSAPEG00000015153)	ANK2 (ENSAPEG00000014987)	ENSAPEG00000014935	C4orf54 (ENSAPEG00000014909)	ENSAPEG00000014895	trmt10a (ENSAPEG00000014878)	ENSAPEG00000014841 #22	slc1a1 (ENSAPEG00000014778) ##23	RAP1GDS1 (ENSAPEG00000014708)	ENSAPEG00000014622	ENSAPEG00000014599	frem1a (ENSAPEG00000014471)	ENSAPEG00000014448	PAQR9 (ENSAPEG00000014435)	ACO1 (ENSAPEG00000014370)	PPM1K (ENSAPEG00000014344)	ENSAPEG00000014291	rnf150b (ENSAPEG00000014266)	ENSAPEG00000014241	abce1 (ENSAPEG00000014179)	anapc10 (ENSAPEG00000014148)	ENSAPEG00000014125
Spiny chromis	MODERN SPECIES	535												camk2d1 (ENSAPOG00000009363)	ANK2 (ENSAPOG00000009249)	ENSAPOG00000009097	trmt10a (ENSAPOG00000009061)	spata6l (ENSAPOG00000009017) #22	slc1a1 (ENSAPOG00000008953) ##23	RAP1GDS1 (ENSAPOG00000008879)	TSPAN5 (ENSAPOG00000008786)	frem1a (ENSAPOG00000008735)	ENSAPOG00000008711	PAQR9 (ENSAPOG00000008687)	ACO1 (ENSAPOG00000008670)	PPM1K (ENSAPOG00000008578)	ENSAPOG00000008540	ENSAPOG00000008517	rnf150b (ENSAPOG00000000222)	ENSAPOG00000008416	abce1 (ENSAPOG00000008022)	anapc10 (ENSAPOG00000007954)	ENSAPOG00000007923
Bicolor damselfish	MODERN SPECIES	760										ENSSPAG00000005909	ANK2 (ENSSPAG00000005945)	C4orf54 (ENSSPAG00000006026)	ENSSPAG00000006032	trmt10a (ENSSPAG00000006046)	ENSSPAG00000006059	spata6l (ENSSPAG00000006089) #22	slc1a1 (ENSSPAG00000006115) ##23	RAP1GDS1 (ENSSPAG00000006243)	tspan5a (ENSSPAG00000006333)	ENSSPAG00000006375	frem1a (ENSSPAG00000006395)
Atherinomorphae	ANCESTRAL SPECIES	34	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Oryzias	ANCESTRAL SPECIES	53	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000155475.h
Oryzias_b	ANCESTRAL SPECIES	37	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a.l
Indian medaka	MODERN SPECIES	19	slx1b (ENSOMEG00000005075)	ENSOMEG00000005062	ENSOMEG00000005048	ing2 (ENSOMEG00000005040)	ENSOMEG00000005031	rwdd (ENSOMEG00000005015)	ENSOMEG00000004977	ENSOMEG00000004908	H2AZ1 (ENSOMEG00000004889)	mllt3 (ENSOMEG00000004860)	ENSOMEG00000004799	ENSOMEG00000004778	hacd4 (ENSOMEG00000004757)	ENSOMEG00000004740	trmt10a (ENSOMEG00000004720)	spata6l (ENSOMEG00000004701) #22	slc1a1 (ENSOMEG00000004659) ##23	RAP1GDS1 (ENSOMEG00000004595)	ENSOMEG00000004522	ENSOMEG00000004502	frem1a (ENSOMEG00000004492)	ENSOMEG00000004458	PAQR9 (ENSOMEG00000004455)	AFAP1 (ENSOMEG00000004442)	mad2l1 (ENSOMEG00000004375)	pde5ab (ENSOMEG00000004350)	zcchc4 (ENSOMEG00000004315)	ABLIM2 (ENSOMEG00000004271)	ARSJ (ENSOMEG00000004257)	ENSOMEG00000004226	ENSOMEG00000004170
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000023659	ets2 (ENSOJAG00000023653)	zgc:112271 (ENSOJAG00000023652)	SLX1 (ENSOJAG00000023649)	ENSOJAG00000023648	ENSOJAG00000023645	ing2 (ENSOJAG00000023641)	rwdd (ENSOJAG00000023638)	ENSOJAG00000023631	ENSOJAG00000023625	H2AZ1 (ENSOJAG00000023617)	mllt3 (ENSOJAG00000023610)	hacd4 (ENSOJAG00000023540)	ENSOJAG00000023536	trmt10a (ENSOJAG00000023535)	ENSOJAG00000023530 #22	ANK2 (ENSOJAG00000023500)	camk2d1 (ENSOJAG00000023195)	ARSJ (ENSOJAG00000023050)	ABLIM2 (ENSOJAG00000023009)	zcchc4 (ENSOJAG00000022997)	pde5ab (ENSOJAG00000022845)	mad2l1 (ENSOJAG00000022783)	AFAP1 (ENSOJAG00000022763)	PAQR9 (ENSOJAG00000022752)	ENSOJAG00000022745	ENSOJAG00000022714	TSPAN5 (ENSOJAG00000022700)	RAP1GDS1 (ENSOJAG00000022683)	slc1a1 (ENSOJAG00000022655) ##23
Oryzias_a	ANCESTRAL SPECIES	103	ENSGT00510000047760	ENSGT00390000013368	ENSGT00950000182899.C.b	ENSGT00940000177470	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893
Chinese medaka	MODERN SPECIES	1095									ENSOSIG00000014032	ENSOSIG00000014038	ENSOSIG00000014040	ENSOSIG00000014046	hacd4 (ENSOSIG00000014061)	ENSOSIG00000014062	trmt10a (ENSOSIG00000014065)	ENSOSIG00000014067 #22	slc1a1 (ENSOSIG00000014068) ##23	ENSOSIG00000014069	RAP1GDS1 (ENSOSIG00000014070)
Cyprinodontiformes	ANCESTRAL SPECIES	29	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Aplocheiloidei	ANCESTRAL SPECIES	49	ENSGT00940000167160	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954.f	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370
Mangrove rivulus	MODERN SPECIES	98	ENSKMAG00000005741	zgc:112271 (ENSKMAG00000005724)	slx1b (ENSKMAG00000005714)	ENSKMAG00000005701	ENSKMAG00000005679	ing2 (ENSKMAG00000005666)	rwdd (ENSKMAG00000005646)	ENSKMAG00000005618	ENSKMAG00000005560	H2AZ1 (ENSKMAG00000005524)	mllt3 (ENSKMAG00000005494)	ENSKMAG00000005440	hacd4 (ENSKMAG00000005415)	C4orf54 (ENSKMAG00000005410)	trmt10a (ENSKMAG00000005389)	ENSKMAG00000005378 #22	slc1a1 (ENSKMAG00000005358) ##23	RAP1GDS1 (ENSKMAG00000005283)	tspan5a (ENSKMAG00000005254)
Cyprinodontoidei	ANCESTRAL SPECIES	39	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT01030000240214	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.k.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Poeciliinae	ANCESTRAL SPECIES	28	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438.k	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00950000183337	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.c	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.a	ENSGT00950000182968.d.a.b.b.a.a	ENSGT00950000182968.d.a.b.b.a.b	ENSGT00940000174504.A.d.b	ENSGT01030000234978.a.b.a	ENSGT00940000174504.A.d.a	ENSGT00940000163911.a.a.b.a.a.a.b.d.b.a	ENSGT00940000162676.a.b.a	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.a	ENSGT00940000162676.a.b.b.a.b
Poecilia	ANCESTRAL SPECIES	40	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438.k	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00950000183337	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.c	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.a	ENSGT00950000182968.d.a.b.b.a.a	ENSGT00950000182968.d.a.b.b.a.b	ENSGT00950000182968.d.a.a.a.d.a.b	ENSGT00940000162676.a.b.a	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.a	ENSGT00940000162676.a.b.b.a.b	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.b.d	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.b	ENSGT00950000182968.d.b.b.f.g
Guppy	MODERN SPECIES	448	zgc:112271 (ENSPREG00000004331)	slx1b (ENSPREG00000004348)	ENSPREG00000004362	ENSPREG00000004373	ing2 (ENSPREG00000004390)	rwdd (ENSPREG00000004405)	ENSPREG00000004434	ENSPREG00000004450	ENSPREG00000004480	ENSPREG00000004493	H2AZ1 (ENSPREG00000004516)	mllt3 (ENSPREG00000004558)	ENSPREG00000004634	ENSPREG00000004844	trmt10a (ENSPREG00000004857)	ENSPREG00000004878 #22	ENSPREG00000004888	tada2b (ENSPREG00000004900)	grpel1 (ENSPREG00000004940)	SORCS2 (ENSPREG00000004980)	ENSPREG00000005066	ENSPREG00000005102	ENSPREG00000005248	ENSPREG00000005257	ENSPREG00000005284	ENSPREG00000005295	ENSPREG00000005387	ENSPREG00000005405	ENSPREG00000005415	ENSPREG00000005430	ENSPREG00000005441
NAME_6	ANCESTRAL SPECIES																	ENSGT00530000063821.b.b #22
Sailfin molly	MODERN SPECIES	2640																ENSPLAG00000004320 #22	kcnc3a (ENSPLAG00000004328)
NAME_4	ANCESTRAL SPECIES	268								ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT01030000240214	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990
Sheepshead minnow	MODERN SPECIES	1393												ENSCVAG00000001475	hacd4 (ENSCVAG00000000056)	C4orf54 (ENSCVAG00000001483)	trmt10a (ENSCVAG00000001488)	ENSCVAG00000001489 #22
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00980000201372	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00980000201372	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Climbing perch	MODERN SPECIES	9	ENSATEG00000001584	ENSATEG00000001569	ENSATEG00000001555	ENSATEG00000001543	rwdd (ENSATEG00000001495)	ENSATEG00000001335	ENSATEG00000001304	ENSATEG00000001291	ENSATEG00000001259	mllt3 (ENSATEG00000001197)	ENSATEG00000001189	hacd4 (ENSATEG00000001186)	ENSATEG00000025549	ENSATEG00000001157	ENSATEG00000001123	spata6l (ENSATEG00000028755) #22	slc1a1 (ENSATEG00000001042) ##23	ENSATEG00000000970	tspan5a (ENSATEG00000000935)	ENSATEG00000029290	frem1a (ENSATEG00000000746)	ENSATEG00000000719	ENSATEG00000000657	ENSATEG00000000649	ENSATEG00000000560	ANK2 (ENSATEG00000028978)	camk2d1 (ENSATEG00000000178)	ARSJ (ENSATEG00000000161)	mad2l1 (ENSATEG00000025736)	pde5ab (ENSATEG00000000026)	ENSATEG00000020711
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000006726	ing2 (ENSBSLG00000006746)	ENSBSLG00000006759	rwdd (ENSBSLG00000006769)	ADAM33 (ENSBSLG00000006874)	ENSBSLG00000007408	ENSBSLG00000007728	H2AZ1 (ENSBSLG00000007765)	mllt3 (ENSBSLG00000007827)	ENSBSLG00000007889	hacd4 (ENSBSLG00000007976)	ENSBSLG00000007987	ENSBSLG00000007993	ENSBSLG00000008011	trmt10a (ENSBSLG00000008016)	spata6l (ENSBSLG00000008029) #22	slc1a1 (ENSBSLG00000008046) ##23	RAP1GDS1 (ENSBSLG00000008075)	tspan5a (ENSBSLG00000008154)	ENSBSLG00000008191	frem1a (ENSBSLG00000008195)	ENSBSLG00000008339	PAQR9 (ENSBSLG00000008360)	ACO1 (ENSBSLG00000008395)	camk2d1 (ENSBSLG00000008861)	ARSJ (ENSBSLG00000010364)	mad2l1 (ENSBSLG00000010365)	pde5ab (ENSBSLG00000010390)	ENSBSLG00000011595	ENSBSLG00000011643	ENSBSLG00000011711
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000001872	SLX1 (ENSMAMG00000025620)	ENSMAMG00000024482	ENSMAMG00000001917	ENSMAMG00000024756	rwdd (ENSMAMG00000001945)	ENSMAMG00000001979	ENSMAMG00000002043	ENSMAMG00000002084	mllt3 (ENSMAMG00000002106)	ENSMAMG00000002155	hacd4 (ENSMAMG00000002249)	ENSMAMG00000002270	ENSMAMG00000002277	ENSMAMG00000002282	ENSMAMG00000002291 #22	slc1a1 (ENSMAMG00000002306) ##23	ENSMAMG00000002355	tspan5a (ENSMAMG00000002417)	ENSMAMG00000002471	frem1a (ENSMAMG00000002508)	ENSMAMG00000027140	ENSMAMG00000002904	ENSMAMG00000002915	ENSMAMG00000002963	ENSMAMG00000003089	ENSMAMG00000003180	ENSMAMG00000003272	pde5ab (ENSMAMG00000003200)	zcchc4 (ENSMAMG00000003297)	ENSMAMG00000003336
Carangaria	ANCESTRAL SPECIES	20	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Tongue sole	MODERN SPECIES		ENSCSEG00000018580	gal3st4 (ENSCSEG00000018579)	trappc14 (ENSCSEG00000018568)	ENSCSEG00000018542	ADAM33 (ENSCSEG00000018523)	ENSCSEG00000018501	H2AZ1 (ENSCSEG00000018489)	mllt3 (ENSCSEG00000018464)	ENSCSEG00000018417	hacd4 (ENSCSEG00000018410)	C4orf54 (ENSCSEG00000018405)	ENSCSEG00000018399	ENSCSEG00000018395	ENSCSEG00000018382	trmt10a (ENSCSEG00000018378)	spata6l (ENSCSEG00000018372) #22	slc1a1 (ENSCSEG00000018344) ##23	ENSCSEG00000018336	RAP1GDS1 (ENSCSEG00000018328)	frem1a (ENSCSEG00000018293)	ENSCSEG00000018286	PAQR9 (ENSCSEG00000018284)	DNMT3B (ENSCSEG00000018277)	ACO1 (ENSCSEG00000018262)	ANK2 (ENSCSEG00000018198)	plcb3 (ENSCSEG00000018114)	ENSCSEG00000018098	ppp1r14bb (ENSCSEG00000018093)	si:ch211-285j22.3 (ENSCSEG00000018086)	brms1 (ENSCSEG00000018079)	tmem179ba (ENSCSEG00000018073)
Carangaria_A	ANCESTRAL SPECIES	41	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000155306.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Barramundi perch	MODERN SPECIES	287	ENSLCAG00010022018	ENSLCAG00010022015	ing2 (ENSLCAG00010022011)	ENSLCAG00010022006	rwdd (ENSLCAG00010022001)	ENSLCAG00010021988	ENSLCAG00010021978	ENSLCAG00010021973	H2AZ1 (ENSLCAG00010021932)	mllt3 (ENSLCAG00010021914)	ENSLCAG00010021891	hacd4 (ENSLCAG00010021884)	C4orf54 (ENSLCAG00010021882)	ENSLCAG00010021881	trmt10a (ENSLCAG00010021876)	spata6l (ENSLCAG00010021871) #22	slc1a1 (ENSLCAG00010021858) ##23	RAP1GDS1 (ENSLCAG00010021802)	tspan5a (ENSLCAG00010021781)	frem1a (ENSLCAG00010021751)	ENSLCAG00010021743	PAQR9 (ENSLCAG00010021736)	ACO1 (ENSLCAG00010021627)
Seriola	ANCESTRAL SPECIES	64						ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Greater amberjack	MODERN SPECIES	49			rwdd (ENSSDUG00000002393)	ENSSDUG00000002416	ENSSDUG00000002423	ENSSDUG00000002432	ENSSDUG00000002460	ENSSDUG00000002489	ENSSDUG00000002505	H2AZ1 (ENSSDUG00000002527)	mllt3 (ENSSDUG00000002558)	ENSSDUG00000002589	hacd4 (ENSSDUG00000002651)	ENSSDUG00000002668	trmt10a (ENSSDUG00000002688)	spata6l (ENSSDUG00000002715) #22	slc1a1 (ENSSDUG00000002724) ##23	RAP1GDS1 (ENSSDUG00000002766)	ENSSDUG00000002856	ENSSDUG00000002881	frem1a (ENSSDUG00000002894)	ENSSDUG00000002958	PAQR9 (ENSSDUG00000002972)	ACO1 (ENSSDUG00000002984)	ENSSDUG00000003039	ENSSDUG00000003091	ENSSDUG00000003159	ENSSDUG00000003180	ARSJ (ENSSDUG00000003283)	mad2l1 (ENSSDUG00000003297)	pde5ab (ENSSDUG00000003319)
Yellowtail amberjack	MODERN SPECIES	3056			rwdd (ENSSLDG00000014523)	ENSSLDG00000014507	ENSSLDG00000014501	ENSSLDG00000014482	ENSSLDG00000014458	ENSSLDG00000014443	ENSSLDG00000014420	H2AZ1 (ENSSLDG00000014399)	mllt3 (ENSSLDG00000014370)	ENSSLDG00000014324	hacd4 (ENSSLDG00000014299)	ENSSLDG00000014288	trmt10a (ENSSLDG00000014264)	ENSSLDG00000014251 #22	slc1a1 (ENSSLDG00000014207) ##23	RAP1GDS1 (ENSSLDG00000014143)	ENSSLDG00000014092	ENSSLDG00000014071	frem1a (ENSSLDG00000014018)	ENSSLDG00000013997	PAQR9 (ENSSLDG00000013992)	ACO1 (ENSSLDG00000013952)	ANK2 (ENSSLDG00000013812)	camk2d1 (ENSSLDG00000013740)	ARSJ (ENSSLDG00000013725)	mad2l1 (ENSSLDG00000013709)	pde5ab (ENSSLDG00000013675)	ENSSLDG00000013657	zcchc4 (ENSSLDG00000013617)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Ballan wrasse	MODERN SPECIES	202							ENSLBEG00000014743	ENSLBEG00000014717	ENSLBEG00000014690	H2AZ1 (ENSLBEG00000014657)	mllt3 (ENSLBEG00000014586)	ENSLBEG00000014253	hacd4 (ENSLBEG00000014068)	ENSLBEG00000014050	trmt10a (ENSLBEG00000014032)	ENSLBEG00000014003 #22	slc1a1 (ENSLBEG00000013947) ##23	ACO1 (ENSLBEG00000013866)	PAQR9 (ENSLBEG00000013829)	ENSLBEG00000013803	frem1a (ENSLBEG00000013674)	tspan5a (ENSLBEG00000013625)	RAP1GDS1 (ENSLBEG00000013550)	AFAP1 (ENSLBEG00000013494)	ABLIM2 (ENSLBEG00000013428)	ENSLBEG00000013399	zcchc4 (ENSLBEG00000013353)	pde5ab (ENSLBEG00000013283)	mad2l1 (ENSLBEG00000013236)	ARSJ (ENSLBEG00000013201)	camk2d1 (ENSLBEG00000012749)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Perciformes	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000167160	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370
Lumpfish	MODERN SPECIES	9	ENSCLMG00005022897	zgc:112271 (ENSCLMG00005022898)	slx1b (ENSCLMG00005022899)	ENSCLMG00005022900	ENSCLMG00005022901	ing2 (ENSCLMG00005022902)	rwdd (ENSCLMG00005022903)	ENSCLMG00005022905	ENSCLMG00005022907	ENSCLMG00005022908	H2AZ1 (ENSCLMG00005022911)	mllt3 (ENSCLMG00005022914)	ENSCLMG00005022920	hacd4 (ENSCLMG00005022949)	trmt10a (ENSCLMG00005022953)	ENSCLMG00005022954 #22	slc1a1 (ENSCLMG00005022956) ##23	RAP1GDS1 (ENSCLMG00005022967)	ENSCLMG00005022993	ENSCLMG00005022994	frem1a (ENSCLMG00005004935)	ENSCLMG00005004941	PAQR9 (ENSCLMG00005004943)	ACO1 (ENSCLMG00005004953)	ANK2 (ENSCLMG00005005554)	ENSCLMG00005005601	ARSJ (ENSCLMG00005005666)	mad2l1 (ENSCLMG00005005688)	pde5ab (ENSCLMG00005005718)	zcchc4 (ENSCLMG00005010832)	ENSCLMG00005010835
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Pike perch	MODERN SPECIES	299												ENSSLUG00000018539	grpel1 (ENSSLUG00000018535)	tada2b (ENSSLUG00000018532)	trmt10a (ENSSLUG00000018527)	spata6l (ENSSLUG00000018513) #22	slc1a1 (ENSSLUG00000018240) ##23	RAP1GDS1 (ENSSLUG00000017865)	tspan5a (ENSSLUG00000017844)	ENSSLUG00000017840	frem1a (ENSSLUG00000017810)	ENSSLUG00000017794	PAQR9 (ENSSLUG00000017790)	ACO1 (ENSSLUG00000016647)
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000024259	ENSCGOG00000024262	ing2 (ENSCGOG00000024263)	ENSCGOG00000024264	ENSCGOG00000024267	rwdd (ENSCGOG00000024269)	ENSCGOG00000024272	ENSCGOG00000024288	ENSCGOG00000024289	H2AZ1 (ENSCGOG00000024291)	mllt3 (ENSCGOG00000024292)	ENSCGOG00000024305	hacd4 (ENSCGOG00000024339)	C4orf54 (ENSCGOG00000024340)	trmt10a (ENSCGOG00000024342)	ENSCGOG00000024343 #22	slc1a1 (ENSCGOG00000024346) ##23	RAP1GDS1 (ENSCGOG00000024365)	tspan5a (ENSCGOG00000024396)	ENSCGOG00000024403	frem1a (ENSCGOG00000024405)	ENSCGOG00000024411	ENSCGOG00000024412	ENSCGOG00000024413	ACO1 (ENSCGOG00000024452)	ANK2 (ENSCGOG00000024701)	ENSCGOG00000024748	ARSJ (ENSCGOG00000024752)	mad2l1 (ENSCGOG00000024753)	pde5ab (ENSCGOG00000024754)	zcchc4 (ENSCGOG00000024755)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19																ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
European seabass	MODERN SPECIES	16	ENSDLAG00005020392	ENSDLAG00005033178	ENSDLAG00005020414	ENSDLAG00005029711	ENSDLAG00005020426	ENSDLAG00005020452	ENSDLAG00005020468	ENSDLAG00005020588	ENSDLAG00005020613	ENSDLAG00005020632	mllt3 (ENSDLAG00005020690)	ENSDLAG00005020745	hacd4 (ENSDLAG00005030706)	ENSDLAG00005005734	ENSDLAG00005005736	spata6l (ENSDLAG00005029816) #22	slc1a1 (ENSDLAG00005033872) ##23	ENSDLAG00005006523	tspan5a (ENSDLAG00005006709)	ENSDLAG00005006736	frem1a (ENSDLAG00005006751)	ENSDLAG00005031223	ENSDLAG00005006897	ENSDLAG00005007733	camk2d1 (ENSDLAG00005020120)	ENSDLAG00005020179	ARSJ (ENSDLAG00005020204)	mad2l1 (ENSDLAG00005028659)	pde5ab (ENSDLAG00005020232)	zcchc4 (ENSDLAG00005020651)	ENSDLAG00005020669
Large yellow croaker	MODERN SPECIES	485						fga (ENSLCRG00005017244)	ENSLCRG00005017243	ENSLCRG00005017242	npy2rl (ENSLCRG00005017240)	rbm46 (ENSLCRG00005017238)	LRAT (ENSLCRG00005017234)	ENSLCRG00005017232	ENSLCRG00005017228	ENSLCRG00005017227	glod5 (ENSLCRG00005017224)	spata6l (ENSLCRG00005017222) #22	slc1a1 (ENSLCRG00005017200) ##23	RAP1GDS1 (ENSLCRG00005016830)	TSPAN5 (ENSLCRG00005016743)	ENSLCRG00005016717	frem1a (ENSLCRG00005016616)	ENSLCRG00005016564	ENSLCRG00005016563	PAQR9 (ENSLCRG00005016562)	ACO1 (ENSLCRG00005016506)	trmt10a (ENSLCRG00005016405)	ARSJ (ENSLCRG00005016400)	ENSLCRG00005015991	ANK2 (ENSLCRG00005007850)	mad2l1 (ENSLCRG00005006748)	pde5ab (ENSLCRG00005006281)
Gilthead seabream	MODERN SPECIES	1	ing2 (ENSSAUG00010007869)	ENSSAUG00010007865	rwdd (ENSSAUG00010007863)	ENSSAUG00010007099	ENSSAUG00010007097	ENSSAUG00010007096	H2AZ1 (ENSSAUG00010007088)	ENSSAUG00010007087	ENSSAUG00010007086	ENSSAUG00010007085	FOCAD (ENSSAUG00010007062)	hacd4 (ENSSAUG00010007059)	ENSSAUG00010007058	ENSSAUG00010007057	trmt10a (ENSSAUG00010007055)	spata6l (ENSSAUG00010007052) #22	slc1a1 (ENSSAUG00010006532) ##23	RAP1GDS1 (ENSSAUG00010005544)	tspan5a (ENSSAUG00010005515)	ENSSAUG00010005512	frem1a (ENSSAUG00010005493)	ENSSAUG00010005479	ENSSAUG00010005474	ENSSAUG00010005469	ENSSAUG00010005459	ENSSAUG00010005450	ENSSAUG00010005443	PAQR9 (ENSSAUG00010005442)	ACO1 (ENSSAUG00010005355)	ENSSAUG00010024423	ANK2 (ENSSAUG00010023331)
Cod	MODERN SPECIES	8	tm4sf21b (ENSGMOG00000018395)	ENSGMOG00000018392	mpdu1b (ENSGMOG00000018375)	sox19b (ENSGMOG00000034003)	ENSGMOG00000018350	senp3b (ENSGMOG00000018338)	acox3 (ENSGMOG00000017847)	ENSGMOG00000014906	ENSGMOG00000009869	ENSGMOG00000022750	mllt3 (ENSGMOG00000022778)	ENSGMOG00000000776	hacd4 (ENSGMOG00000000843)	ENSGMOG00000026945	ENSGMOG00000000852	ENSGMOG00000027054 #22	ENSGMOG00000024515	slc1a1 (ENSGMOG00000000866) ##23	ENSGMOG00000000882	tspan5a (ENSGMOG00000006958)	ENSGMOG00000025124	frem1a (ENSGMOG00000000910)	ENSGMOG00000000968	ENSGMOG00000026866	ENSGMOG00000032873	ENSGMOG00000005480	ENSGMOG00000000915	ENSGMOG00000030156	ENSGMOG00000020024	ENSGMOG00000030297	ENSGMOG00000003710
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000165285.f	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.e	ENSGT00950000182924.A.b.a.b
Salmoninae	ANCESTRAL SPECIES	921														ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##23	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000155429.a.a.b
Huchen	MODERN SPECIES	3107										ENSHHUG00000029073	ENSHHUG00000029071	ENSHHUG00000029065	ENSHHUG00000029062	ENSHHUG00000029056	trmt10a (ENSHHUG00000029045)	spata6l (ENSHHUG00000029028) #22	slc1a1 (ENSHHUG00000029005) ##23	ENSHHUG00000028997	RAP1GDS1 (ENSHHUG00000028291)
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##23	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.v	ENSGT00950000182866.D.d.a.c.a.i.b.a.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##23	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00940000157122.b.a.f
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000097570	cj011 (ENSSSAG00000063292)	ENSSSAG00000086352	ENSSSAG00000063203	ENSSSAG00000062983	ENSSSAG00000062965	ENSSSAG00000057685	ENSSSAG00000057570	PPP3CA (ENSSSAG00000040278)	Ddit4l (ENSSSAG00000039999)	H2AZ1 (ENSSSAG00000039934)	ENSSSAG00000039827	ENSSSAG00000110195	ENSSSAG00000090565	ENSSSAG00000120143	spata6l (ENSSSAG00000039413) #22	ENSSSAG00000085280	slc1a1 (ENSSSAG00000037401) ##23	ENSSSAG00000036477	ENSSSAG00000033777	ENSSSAG00000030907	ENSSSAG00000006377	fa29a (ENSSSAG00000005878)	ENSSSAG00000113997	ENSSSAG00000110280	ENSSSAG00000005822	ENSSSAG00000005799	ENSSSAG00000005787	ENSSSAG00000108693	coro1b (ENSSSAG00000005518)	ENSSSAG00000005493
River trout	MODERN SPECIES	38	ENSSTUG00000040588	ACO1 (ENSSTUG00000040449)	plaa (ENSSTUG00000040217)	zdhhc21 (ENSSTUG00000040206)	ENSSTUG00000040201	ENSSTUG00000040188	nxpe3 (ENSSTUG00000040174)	PPP3CA (ENSSTUG00000035269)	DDIT4L (ENSSTUG00000035157)	H2AZ1 (ENSSTUG00000035152)	mllt3 (ENSSTUG00000035120)	ENSSTUG00000035116	ENSSTUG00000035076	ENSSTUG00000035066	trmt10a (ENSSTUG00000034961)	spata6l (ENSSTUG00000034943) #22	slc1a1 (ENSSTUG00000034771) ##23	ENSSTUG00000034727	RAP1GDS1 (ENSSTUG00000034176)	tspan5a (ENSSTUG00000034007)	ENSSTUG00000032676	haus6 (ENSSTUG00000032605)	ENSSTUG00000032597	plin2 (ENSSTUG00000032583)	ENSSTUG00000032555	larp7 (ENSSTUG00000032520)	ENSSTUG00000032502	ENSSTUG00000032495	coro1b (ENSSTUG00000032447)	dtx4a (ENSSTUG00000032346)	msantd1 (ENSSTUG00000032329)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##23	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT01030000236063	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000045951	ENSOMYG00000045963	ENSOMYG00000026017	ENSOMYG00000026400	ENSOMYG00000026434	ENSOMYG00000064361	PPP3CA (ENSOMYG00000026946)	ENSOMYG00000028176	ENSOMYG00000028197	H2AZ1 (ENSOMYG00000028216)	ENSOMYG00000028306	ENSOMYG00000028405	ENSOMYG00000028418	ENSOMYG00000028435	ENSOMYG00000028453	ENSOMYG00000051473 #22	ENSOMYG00000028593 ##23	ENSOMYG00000028779	ENSOMYG00000029095	ENSOMYG00000029116	ENSOMYG00000058703	ENSOMYG00000029468	ENSOMYG00000029698	ENSOMYG00000029728	ENSOMYG00000029762	ENSOMYG00000029773	ENSOMYG00000029800	ENSOMYG00000029812	ENSOMYG00000029848	coro1b (ENSOMYG00000029865)	ENSOMYG00000029912
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a.n.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##23	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688	ENSGT00940000157122.b.a.f
Coho salmon	MODERN SPECIES	29	ENSOKIG00005003493	ACER2 (ENSOKIG00005003511)	ENSOKIG00005003521	ACO1 (ENSOKIG00005003541)	plaa (ENSOKIG00005003581)	ZDHHC21 (ENSOKIG00005003629)	NFIB (ENSOKIG00005003656)	PPP3CA (ENSOKIG00005003983)	DDIT4L (ENSOKIG00005008111)	ENSOKIG00005008127	MLLT3 (ENSOKIG00005008168)	ENSOKIG00005008202	ENSOKIG00005008214	ENSOKIG00005008227	TRMT10A (ENSOKIG00005008243)	spata6l (ENSOKIG00005008255) #22	slc1a1 (ENSOKIG00005008275) ##23	RAP1GDS1 (ENSOKIG00005008342)	ENSOKIG00005009165	tspan5a (ENSOKIG00005009185)	DENND4C (ENSOKIG00005009314)	ENSOKIG00005009610	ENSOKIG00005009639	ENSOKIG00005009645	ENSOKIG00005009655	LARP7 (ENSOKIG00005009666)	ENSOKIG00005009678	ENSOKIG00005009684	coro1b (ENSOKIG00005009692)	ENSOKIG00005009713	dtx4a (ENSOKIG00005009730)
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005047787	ACER2 (ENSOTSG00005047788)	ENSOTSG00005047789	ACO1 (ENSOTSG00005047791)	plaa (ENSOTSG00005047796)	zdhhc21 (ENSOTSG00005047798)	NFIB (ENSOTSG00005047799)	PPP3CA (ENSOTSG00005047806)	DDIT4L (ENSOTSG00005047914)	H2AZ1 (ENSOTSG00005047915)	mllt3 (ENSOTSG00005047917)	ENSOTSG00005047918	ENSOTSG00005047919	ENSOTSG00005047920	trmt10a (ENSOTSG00005047921)	spata6l (ENSOTSG00005047922) #22	slc1a1 (ENSOTSG00005047923) ##23	RAP1GDS1 (ENSOTSG00005047924)	ENSOTSG00005047925	tspan5a (ENSOTSG00005047926)	DENND4C (ENSOTSG00005047927)	ENSOTSG00005047928	haus6 (ENSOTSG00005047929)	ENSOTSG00005047932	plin2 (ENSOTSG00005047933)	ENSOTSG00005047935	larp7 (ENSOTSG00005047936)	ENSOTSG00005047937	ENSOTSG00005047938	coro1b (ENSOTSG00005047939)	dtx4a (ENSOTSG00005047940)
Northern pike	MODERN SPECIES	23	plaa (ENSELUG00000015555)	zdhhc21 (ENSELUG00000015599)	NFIB (ENSELUG00000015696)	BANK1 (ENSELUG00000015766)	PPP3CA (ENSELUG00000015889)	DDIT4L (ENSELUG00000015919)	H2AZ1 (ENSELUG00000015934)	mllt3 (ENSELUG00000016011)	ENSELUG00000016097	HACD4 (ENSELUG00000016126)	C4orf54 (ENSELUG00000016148)	ENSELUG00000016170	ENSELUG00000016183	ENSELUG00000031565	trmt10a (ENSELUG00000016190)	spata6l (ENSELUG00000016212) #22	slc1a1 (ENSELUG00000016268) ##23	RAP1GDS1 (ENSELUG00000016426)	tspan5a (ENSELUG00000016547)	ENSELUG00000016572	frem1a (ENSELUG00000016724)	ACO1 (ENSELUG00000016812)	ENSELUG00000016841	ACER2 (ENSELUG00000016895)	ccdc149a (ENSELUG00000016931)	dhx15 (ENSELUG00000016984)	PPARGC1A (ENSELUG00000017027)	gba3 (ENSELUG00000017046)	ADGRA3 (ENSELUG00000000643)	KCNIP4 (ENSELUG00000017200)	sec24d (ENSELUG00000017252)
Otomorpha	ANCESTRAL SPECIES	145						ENSGT00940000155658	ENSGT00730000112044	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260265	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Otophysi	ANCESTRAL SPECIES	50	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049.b	ENSGT00950000183153.c.a.q	ENSGT00940000163587.a.b.b.e.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00940000160621	ENSGT00940000177336	ENSGT00940000156850.a.a	ENSGT00390000014725.r.a	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00390000009210	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Channel catfish	MODERN SPECIES	26	ENSIPUG00000006040	cideb (ENSIPUG00000006003)	homezb (ENSIPUG00000005992)	ENSIPUG00000005984	ENSIPUG00000005972	ENSIPUG00000005938	ENSIPUG00000005925	syt4 (ENSIPUG00000005912)	ENSIPUG00000005896	ENSIPUG00000005889	ENSIPUG00000005838	ENSIPUG00000005819	ENSIPUG00000005810	ENSIPUG00000005761	gabarap (ENSIPUG00000005735)	ENSIPUG00000005729 #22	slc1a1 (ENSIPUG00000005686) ##23	rap1gds1 (ENSIPUG00000005613)	TSPAN5 (ENSIPUG00000005533)	ENSIPUG00000005514	frem1 (ENSIPUG00000005425)	ENSIPUG00000005398	elp5 (ENSIPUG00000005381)	phf23b (ENSIPUG00000005365)	ENSIPUG00000005361	plscr3b (ENSIPUG00000005282)	tnk1 (ENSIPUG00000005265)	ENSIPUG00000005262	senp3b (ENSIPUG00000005243)	eif4a1a (ENSIPUG00000005117)	sox19a (ENSIPUG00000005096)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT01030000234601.s	ENSGT00940000173396	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a
Characoidei	ANCESTRAL SPECIES	9	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00940000163587.a.b.b.f	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351.e.a	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT01030000234601.s	ENSGT00940000173396	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a
Red-bellied piranha	MODERN SPECIES	224															gabarapb (ENSPNAG00000011021)	spata6l (ENSPNAG00000011014) #22	slc1a1 (ENSPNAG00000010984) ##23	RAP1GDS1 (ENSPNAG00000001461)	tspan5a (ENSPNAG00000001444)	ENSPNAG00000010756	frem1a (ENSPNAG00000010747)	USP53 (ENSPNAG00000010692)	myoz2a (ENSPNAG00000001423)	SYNPO2 (ENSPNAG00000001422)	sec24d (ENSPNAG00000010613)	KCNIP4 (ENSPNAG00000010598)	ENSPNAG00000001405	ADGRA3 (ENSPNAG00000001403)	gba3 (ENSPNAG00000010437)	PPARGC1A (ENSPNAG00000010393)	dhx15 (ENSPNAG00000010321)
Mexicana tetra	MODERN SPECIES	7	ap1s1 (ENSAMXG00000011750)	serpine1 (ENSAMXG00000011753)	zgc:77439 (ENSAMXG00000011762)	ENSAMXG00000035360	ENSAMXG00000030988	mpdu1b (ENSAMXG00000040864)	sox19b (ENSAMXG00000035936)	eif4a1a (ENSAMXG00000030251)	senp3b (ENSAMXG00000011802)	tnk1 (ENSAMXG00000011806)	plscr3b (ENSAMXG00000039385)	phf23b (ENSAMXG00000029079)	elp5 (ENSAMXG00000011835)	ctdnep1b (ENSAMXG00000042194)	gabarapb (ENSAMXG00000039481)	spata6l (ENSAMXG00000013847) #22	slc1a1 (ENSAMXG00000043975) ##23	ENSAMXG00000032033	RAP1GDS1 (ENSAMXG00000013835)	tspan5a (ENSAMXG00000040397)	ENSAMXG00000002335	frem1a (ENSAMXG00000002343)	USP53 (ENSAMXG00000002366)	myoz2a (ENSAMXG00000031405)	ENSAMXG00000030857	sec24d (ENSAMXG00000002393)	KCNIP4 (ENSAMXG00000002428)	ENSAMXG00000030994	ADGRA3 (ENSAMXG00000002446)	gba3 (ENSAMXG00000002452)	PPARGC1A (ENSAMXG00000002461)
Electric eel	MODERN SPECIES	244	trappc14 (ENSEEEG00000011821)	gal3st4 (ENSEEEG00000011822)	her8a (ENSEEEG00000011824)	ENSEEEG00000011825	ENSEEEG00000011827	mpdu1b (ENSEEEG00000011830)	sox19b (ENSEEEG00000011838)	eif4a1a (ENSEEEG00000011870)	senp3b (ENSEEEG00000012979)	tnk1 (ENSEEEG00000012986)	plscr3b (ENSEEEG00000012989)	phf23b (ENSEEEG00000012994)	elp5 (ENSEEEG00000012995)	ctdnep1b (ENSEEEG00000012998)	gabarapb (ENSEEEG00000013009)	ENSEEEG00000013014 #22	slc1a1 (ENSEEEG00000013038) ##23	RAP1GDS1 (ENSEEEG00000013291)	tspan5a (ENSEEEG00000013729)
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00940000157410	ENSGT00550000074994	ENSGT00950000183102.A.b.b	ENSGT00940000159841	ENSGT00950000182838.B.a.a	ENSGT00940000159421	ENSGT00390000005939.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049.b	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688	ENSGT00950000183153.c.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Cyprininae	ANCESTRAL SPECIES	188									ENSGT00950000182838.B.a.a.e	ENSGT00940000159421.g	ENSGT00390000005939.b.j	ENSGT00390000009210	ENSGT01040000240503.B.j	ENSGT00940000157496	ENSGT00940000166995.g	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.b ##23	ENSGT00390000014293.a.e.a.b	ENSGT00940000161376	ENSGT00940000155429.a.a.c.b	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c.d	ENSGT00940000156337.c.c	ENSGT00950000183027.b.b.h	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000182924.A.b.a.b.d	ENSGT00940000158985.r.b.b	ENSGT00940000157235.j	ENSGT00940000160460.b	ENSGT00950000183137.b.a.g
Goldfish	MODERN SPECIES	47	zgc:162592 (ENSCARG00000050057)	cyb5b (ENSCARG00000050050)	dhx38 (ENSCARG00000049334)	ENSCARG00000049051	zfhx3b (ENSCARG00000048983)	ENSCARG00000048970	ENSCARG00000068836	ENSCARG00000068744	ENSCARG00000068443	PHLPP2 (ENSCARG00000068350)	ap1g1 (ENSCARG00000068151)	ZNF821 (ENSCARG00000068122)	ATXN1L (ENSCARG00000068117)	ctdnep1b (ENSCARG00000068102)	GABARAP (ENSCARG00000068082)	spata6l (ENSCARG00000068068) #22	slc1a1 (ENSCARG00000068017) ##23	RAP1GDS1 (ENSCARG00000067961)	ENSCARG00000067886	ENSCARG00000067878	frem1a (ENSCARG00000067826)	USP53 (ENSCARG00000067800)	MYOZ2 (ENSCARG00000067791)	SYNPO2 (ENSCARG00000067787)	sec24d (ENSCARG00000064536)	KCNIP4 (ENSCARG00000064167)	ADGRA3 (ENSCARG00000063837)	gba3 (ENSCARG00000063771)	ENSCARG00000063752	PPARGC1A (ENSCARG00000063351)	dhx15 (ENSCARG00000063047)
Cyprininae_a	ANCESTRAL SPECIES	141									ENSGT00950000182838.B.a.a.e	ENSGT00940000159421.g	ENSGT00390000005939.b.j	ENSGT00390000009210	ENSGT01040000240503.B.j	ENSGT00940000157496	ENSGT00940000166995.g	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.b ##23	ENSGT00390000014293.a.e.a.b	ENSGT00940000155429.a.a.c.b	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c.d	ENSGT00940000156337.c.c	ENSGT00950000183027.b.b.h	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000182924.A.b.a.b.d	ENSGT00940000158985.r.b.b	ENSGT00940000157235.j	ENSGT00940000160460.b	ENSGT00950000183137.b.a.g	ENSGT00940000155800.a.b.o
Common carp reference	MODERN SPECIES		zgc:162592 (ENSCCRG00000073947)	cyb5b (ENSCCRG00000057704)	dhx38 (ENSCCRG00000018599)	ENSCCRG00000071991	zfhx3b (ENSCCRG00000062080)	ENSCCRG00000077952	ENSCCRG00000043262	ENSCCRG00000080354	marveld3 (ENSCCRG00000081318)	ENSCCRG00000050379	ap1g1 (ENSCCRG00000037560)	ENSCCRG00000046770	ENSCCRG00000068681	ctdnep1b (ENSCCRG00000054342)	ENSCCRG00000060838	spata6l (ENSCCRG00000047563) #22	slc1a1 (ENSCCRG00000047608) ##23	ENSCCRG00000042149	tspan5a (ENSCCRG00000065306)	ENSCCRG00000069654	frem1a (ENSCCRG00000063078)	USP53 (ENSCCRG00000036700)	MYOZ2 (ENSCCRG00000078569)	SYNPO2 (ENSCCRG00000068614)	sec24d (ENSCCRG00000061858)	KCNIP4 (ENSCCRG00000064572)	ADGRA3 (ENSCCRG00000024750)	gba3 (ENSCCRG00000011902)	PPARGC1A (ENSCCRG00000020738)	dhx15 (ENSCCRG00000072441)	sod3a (ENSCCRG00000077543)
Golden-line barbel	MODERN SPECIES	461	ENSSGRG00000027706	dhx38 (ENSSGRG00000027700)	zfhx3b (ENSSGRG00000027695)	ENSSGRG00000027693	CRISPLD2 (ENSSGRG00000027669)	ENSSGRG00000027514	PHLPP2 (ENSSGRG00000027479)	ap1g1 (ENSSGRG00000025255)	ZNF821 (ENSSGRG00000025183)	ATXN1L (ENSSGRG00000025182)	ENSSGRG00000025181	elp5 (ENSSGRG00000025179)	ctdnep1b (ENSSGRG00000025133)	ctdnep1b (ENSSGRG00000025131)	gabarapb (ENSSGRG00000025116)	spata6l (ENSSGRG00000025115) #22	slc1a1 (ENSSGRG00000025087) ##23	RAP1GDS1 (ENSSGRG00000024379)	ENSSGRG00000024363	ENSSGRG00000024362	USP53 (ENSSGRG00000024360)	MYOZ2 (ENSSGRG00000024358)	ENSSGRG00000024357	sec24d (ENSSGRG00000023108)	ENSSGRG00000023100
Zebrafish	MODERN SPECIES	22	ENSDARG00000098937	zfhx3b (ENSDARG00000103057)	ENSDARG00000113074	ENSDARG00000104742	ENSDARG00000110427	CRISPLD2 (ENSDARG00000088595)	USP10 (ENSDARG00000103422)	marveld3 (ENSDARG00000099654)	phlpp2 (ENSDARG00000090255)	ap1g1 (ENSDARG00000102394)	ZNF821 (ENSDARG00000106989)	ATXN1L (ENSDARG00000086977)	elp5 (ENSDARG00000067918)	ctdnep1b (ENSDARG00000035781)	gabarapb (ENSDARG00000052082)	spata6l (ENSDARG00000004874) #22	slc1a1 (ENSDARG00000020212) ##23	RAP1GDS1 (ENSDARG00000073741)	tspan5a (ENSDARG00000086033)	ENSDARG00000105048	frem1a (ENSDARG00000069473)	USP53 (ENSDARG00000078615)	myoz2a (ENSDARG00000012311)	ENSDARG00000099032	sec24d (ENSDARG00000045946)	KCNIP4 (ENSDARG00000088100)	ADGRA3 (ENSDARG00000073673)	gba3 (ENSDARG00000031150)	PPARGC1A (ENSDARG00000067829)	dhx15 (ENSDARG00000015392)	sod3a (ENSDARG00000070168)
Clupeiformes	ANCESTRAL SPECIES	226						ENSGT00940000155658	ENSGT00730000112044	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260265	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##23	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Atlantic herring	MODERN SPECIES	9	NRXN2 (ENSCHAG00000003236)	ENSCHAG00000006527	ENSCHAG00000006540	ENSCHAG00000006560	ENSCHAG00000006594	ENSCHAG00000006621	ENSCHAG00000006663	ENSCHAG00000006671	kirrel1a (ENSCHAG00000006715)	ndufs2 (ENSCHAG00000007869)	hacd4 (ENSCHAG00000010111)	ENSCHAG00000010170	mllt3 (ENSCHAG00000011337)	ENSCHAG00000011371	ENSCHAG00000011377	ENSCHAG00000011404 #22	slc1a1 (ENSCHAG00000011423) ##23	ENSCHAG00000011744	ENSCHAG00000011774	ENSCHAG00000011789	ENSCHAG00000011803	ENSCHAG00000011821	ENSCHAG00000011840	ENSCHAG00000011848	ENSCHAG00000011863	ADRA2C (ENSCHAG00000011932)	DOK7 (ENSCHAG00000012020)	HGFAC (ENSCHAG00000012034)	ENSCHAG00000012261	msantd1 (ENSCHAG00000012445)	dtx4a (ENSCHAG00000012449)
Denticle herring	MODERN SPECIES		ENSDCDG00000029756	ENSDCDG00000029754	ACO1 (ENSDCDG00000029709)	sepsecs (ENSDCDG00000029683)	lgi2a (ENSDCDG00000029679)	dock11 (ENSDCDG00000023096)	ENSDCDG00000022950	kirrel1a (ENSDCDG00000022254)	ndufs2 (ENSDCDG00000021552)	fcer1g (ENSDCDG00000021546)	hacd4 (ENSDCDG00000021545)	ENSDCDG00000020315	mllt3 (ENSDCDG00000020307)	C4orf54 (ENSDCDG00000020306)	trmt10a (ENSDCDG00000020305)	spata6l (ENSDCDG00000020304) #22	slc1a1 (ENSDCDG00000018776) ##23	RAP1GDS1 (ENSDCDG00000018603)	tspan5a (ENSDCDG00000018556)	ENSDCDG00000018547	frem1a (ENSDCDG00000018530)	ENSDCDG00000018519	SYNPO2 (ENSDCDG00000018518)	USP53 (ENSDCDG00000018506)	ENSDCDG00000018501	MYOZ2 (ENSDCDG00000018492)	SYNPO2 (ENSDCDG00000018487)	sec24d (ENSDCDG00000011172)	KCNIP4 (ENSDCDG00000010857)	gba3 (ENSDCDG00000010832)	ADGRA3 (ENSDCDG00000010760)
Spotted gar	MODERN SPECIES	670	CDKN2B (ENSLOCG00000012588)	CXXC4 (ENSLOCG00000012594)	TET2 (ENSLOCG00000012598)	ppa2 (ENSLOCG00000012607)	ARHGEF38 (ENSLOCG00000012616)	ints12 (ENSLOCG00000012622)	gstcd (ENSLOCG00000012628)	npnta (ENSLOCG00000012639)	tbck (ENSLOCG00000012644)	sgms2b (ENSLOCG00000012660)	papss1 (ENSLOCG00000012667)	dkk2 (ENSLOCG00000012675)	GIMD1 (ENSLOCG00000012679)	aimp1a (ENSLOCG00000012682)	ENSLOCG00000012690	spata6l (ENSLOCG00000012696) #22	slc1a1 (ENSLOCG00000012701) #23	slc1a1 (ENSLOCG00000012708) #23	RAP1GDS1 (ENSLOCG00000012715)	tspan5b (ENSLOCG00000012728)	trmt10b (ENSLOCG00000012735)	ENSLOCG00000012739	intu (ENSLOCG00000012742)	ino80b (ENSLOCG00000012755)	AADAT (ENSLOCG00000012761)	mfap3l (ENSLOCG00000012768)	ENSLOCG00000012772	DNAH6 (ENSLOCG00000012784)	ENSLOCG00000012794	chrnb3b (ENSLOCG00000012803)	chrna6 (ENSLOCG00000012810)
Reedfish	MODERN SPECIES	15	ENSECRG00000010260	fam241a (ENSECRG00000010273)	pitx2 (ENSECRG00000010290)	enpep (ENSECRG00000010349)	elovl6 (ENSECRG00000010538)	egf (ENSECRG00000010608)	lrit3a (ENSECRG00000010702)	rrh (ENSECRG00000010709)	trmt10a (ENSECRG00000010724)	mttp (ENSECRG00000010743)	ENSECRG00000010762	dapp1 (ENSECRG00000010775)	lamtor3 (ENSECRG00000010789)	gar1 (ENSECRG00000010795)	ENSECRG00000010802	ENSECRG00000010809 #22	slc1a1 (ENSECRG00000010813) #23	RAP1GDS1 (ENSECRG00000010846)	tspan5b (ENSECRG00000010899)	eif4ea (ENSECRG00000010918)	metap1 (ENSECRG00000010934)	adh5 (ENSECRG00000010976)	ENSECRG00000011063	ENSECRG00000011070	ENSECRG00000011082	ENSECRG00000011096	plaa (ENSECRG00000011100)	zdhhc21 (ENSECRG00000011106)	NFIB (ENSECRG00000011118)	MPDZ (ENSECRG00000011134)	ENSECRG00000011149
Elephant shark	MODERN SPECIES	1509	bnc2 (ENSCMIG00000007918)	CNTLN (ENSCMIG00000007920)	ENSCMIG00000007923	ENSCMIG00000007934	ENSCMIG00000007945	ADAMTSL1 (ENSCMIG00000007951)	ENSCMIG00000007955	ENSCMIG00000007958	ENSCMIG00000007960	ENSCMIG00000007962	plin2 (ENSCMIG00000007964)	elavl2 (ENSCMIG00000007974)	CAAP1 (ENSCMIG00000007989)	plaa (ENSCMIG00000007998)	ENSCMIG00000008011	ENSCMIG00000008013 #22	ENSCMIG00000008018 #23	ENSCMIG00000008032	GLIS3 (ENSCMIG00000008035) #24	rfx3 (ENSCMIG00000008108) #25	ENSCMIG00000008233	pum3 (ENSCMIG00000008286) #26	KCNV2 (ENSCMIG00000008387) #27	vldlr (ENSCMIG00000008511) #28	ENSCMIG00000009053 #28	ENSCMIG00000009311 #30	ENSCMIG00000009379	dmrt2a (ENSCMIG00000009380) #31	dmrt3a (ENSCMIG00000009382) #32	DMRT1 (ENSCMIG00000009384) #33	KANK1 (ENSCMIG00000009393) #34