Chordata	DUPLICATION
Chordata	ANCESTRAL SPECIES																	ENSGT00530000063821.b.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063821.b.b #22
Gnathostomata	ANCESTRAL SPECIES	71																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821 #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Euteleostomi	ANCESTRAL SPECIES	24																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000155876 #37	ENSGT00940000164995	ENSGT00640000091523
Sarcopterygii	ANCESTRAL SPECIES	81	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154396.a	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154396.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000164995
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000164995
Mammalia	ANCESTRAL SPECIES	24	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Theria	ANCESTRAL SPECIES	30	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000164995
Eutheria	ANCESTRAL SPECIES	7	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000164995
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Primates	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750	ENSGT00640000091523
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154937.s.b #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33
Macaca	ANCESTRAL SPECIES	10	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154937.s.b #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00990000207287 #13	ENSGT00940000154937.s.b #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT01100000264112.b.a #34	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Rhesus	MODERN SPECIES	6	ERMP1 (ENSMMUG00000005469) #7	RIC1 (ENSMMUG00000009020) #8	ENSMMUG00000063608 #9	PDCD1LG2 (ENSMMUG00000017991) #10	PLGRKT (ENSMMUG00000006197) #11	CD274 (ENSMMUG00000012235) #12	ENSMMUG00000060737 #13	ENSMMUG00000057739 #14	RLN2 (ENSMMUG00000047971) #15	INSL4 (ENSMMUG00000058221) #16	INSL6 (ENSMMUG00000065127) #17	JAK2 (ENSMMUG00000014558) #18	RCL1 (ENSMMUG00000057331) #19	AK3 (ENSMMUG00000000143) #20	CDC37L1 (ENSMMUG00000000141) #21	SPATA6L (ENSMMUG00000000136) #22	PLPP6 (ENSMMUG00000059411) #23	SLC1A1 (ENSMMUG00000000135) #24	GLIS3 (ENSMMUG00000057568) #25	RFX3 (ENSMMUG00000000802) #26	PUM3 (ENSMMUG00000002362) #27	KCNV2 (ENSMMUG00000060949) #28	VLDLR (ENSMMUG00000015093) #29	SMARCA2 (ENSMMUG00000015279) #30	ENSMMUG00000051059 #31	DMRT2 (ENSMMUG00000014844) #32	DMRT3 (ENSMMUG00000044083) #33	ENSMMUG00000061012 #34	KANK1 (ENSMMUG00000019862) #35	ENSMMUG00000064601 #36	DOCK8 (ENSMMUG00000016976) #37
Crab-eating macaque	MODERN SPECIES	6	PDCD1LG2 (ENSMFAG00000042841) #10	CD274 (ENSMFAG00000044358) #12	ENSMFAG00000048939	PLGRKT (ENSMFAG00000000751) #11	ENSMFAG00000062108 #13	ENSMFAG00000038755 #14	RLN2 (ENSMFAG00000060189) #15	INSL4 (ENSMFAG00000050840) #16	INSL6 (ENSMFAG00000027620) #17	ENSMFAG00000054197	JAK2 (ENSMFAG00000003627) #18	RCL1 (ENSMFAG00000037906) #19	ENSMFAG00000049440	AK3 (ENSMFAG00000041698) #20	CDC37L1 (ENSMFAG00000000879) #21	SPATA6L (ENSMFAG00000032285) #22	SLC1A1 (ENSMFAG00000038163) #24	ENSMFAG00000030908 #25	ENSMFAG00000049557	RFX3 (ENSMFAG00000000237) #26	ENSMFAG00000049201	PUM3 (ENSMFAG00000001430) #27	KCNV2 (ENSMFAG00000055892) #28	VLDLR (ENSMFAG00000032374) #29	ENSMFAG00000048099	ENSMFAG00000003814 #30	ENSMFAG00000056188	ENSMFAG00000058821 #30	DMRT2 (ENSMFAG00000040812) #32	DMRT3 (ENSMFAG00000045391) #33	ENSMFAG00000060255 #34
Pig-tailed macaque	MODERN SPECIES	182		PDCD1LG2 (ENSMNEG00000022031) #10	CD274 (ENSMNEG00000044065) #12	PLGRKT (ENSMNEG00000035542) #11	ENSMNEG00000006679	ENSMNEG00000039597 #14	RLN2 (ENSMNEG00000045554) #15	INSL4 (ENSMNEG00000038309) #16	INSL6 (ENSMNEG00000011366) #17	ENSMNEG00000032986	JAK2 (ENSMNEG00000031180) #18	RCL1 (ENSMNEG00000012288) #19	AK3 (ENSMNEG00000041876) #20	CDC37L1 (ENSMNEG00000030663) #21	PLPP6 (ENSMNEG00000001828) #23	SPATA6L (ENSMNEG00000044422) #22	SLC1A1 (ENSMNEG00000029913) #24	GLIS3 (ENSMNEG00000032738) #25	ENSMNEG00000040313	ENSMNEG00000042708	RFX3 (ENSMNEG00000038188) #26	ENSMNEG00000032248	PUM3 (ENSMNEG00000035288) #27	KCNV2 (ENSMNEG00000012723) #28	VLDLR (ENSMNEG00000040863) #29	ENSMNEG00000044919	ENSMNEG00000040152	ENSMNEG00000028744	SMARCA2 (ENSMNEG00000041069) #30	DMRT2 (ENSMNEG00000033851) #32	DMRT3 (ENSMNEG00000035240) #33
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154937.s.b #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489
Olive baboon	MODERN SPECIES	4	MLANA (ENSPANG00000025182)	ERMP1 (ENSPANG00000025174) #7	RIC1 (ENSPANG00000025173) #8	PDCD1LG2 (ENSPANG00000025172) #10	CD274 (ENSPANG00000025169) #12	PLGRKT (ENSPANG00000025170) #11	ENSPANG00000023574 #14	RLN2 (ENSPANG00000040000) #15	INSL4 (ENSPANG00000051326) #16	INSL6 (ENSPANG00000025144) #17	ENSPANG00000041678	JAK2 (ENSPANG00000025145) #18	RCL1 (ENSPANG00000025151) #19	AK3 (ENSPANG00000025152) #20	CDC37L1 (ENSPANG00000025153) #21	SPATA6L (ENSPANG00000025154) #22	SLC1A1 (ENSPANG00000025156) #24	GLIS3 (ENSPANG00000025157) #25	ENSPANG00000046940 ##9	RFX3 (ENSPANG00000025143) #26	PUM3 (ENSPANG00000025118) #27	KCNV2 (ENSPANG00000025119) #28	VLDLR (ENSPANG00000025120) #29	ENSPANG00000042712	SMARCA2 (ENSPANG00000025121) #30	DMRT2 (ENSPANG00000025122) #32	DMRT3 (ENSPANG00000025123) #33	DMRT1 (ENSPANG00000025124)	KANK1 (ENSPANG00000025125) #35	DOCK8 (ENSPANG00000025117) #37	ENSPANG00000025116
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154937.s.b #14	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489
Drill	MODERN SPECIES	978	RIC1 (ENSMLEG00000032920) #8	PDCD1LG2 (ENSMLEG00000021844) #10	CD274 (ENSMLEG00000031295) #12	ENSMLEG00000042007	PLGRKT (ENSMLEG00000042174) #11	ENSMLEG00000035630 #14	RLN2 (ENSMLEG00000039515) #15	INSL4 (ENSMLEG00000034989) #16	INSL6 (ENSMLEG00000042955) #17	ENSMLEG00000029968	JAK2 (ENSMLEG00000030814) #18	RCL1 (ENSMLEG00000043088) #19	AK3 (ENSMLEG00000032869) #20	CDC37L1 (ENSMLEG00000014590) #21	PLPP6 (ENSMLEG00000009133) #23	SPATA6L (ENSMLEG00000034746) #22	SLC1A1 (ENSMLEG00000042172) #24	GLIS3 (ENSMLEG00000040353) #25	ENSMLEG00000000662	ENSMLEG00000038681	RFX3 (ENSMLEG00000033860) #26	ENSMLEG00000041919	PUM3 (ENSMLEG00000034820) #27	KCNV2 (ENSMLEG00000032357) #28	VLDLR (ENSMLEG00000032288) #29	ENSMLEG00000035182	ENSMLEG00000041221	SMARCA2 (ENSMLEG00000027418) #30
Sooty mangabey	MODERN SPECIES	629	MLANA (ENSCATG00000044699)	ERMP1 (ENSCATG00000044284) #7	RIC1 (ENSCATG00000011981) #8	PDCD1LG2 (ENSCATG00000017898) #10	CD274 (ENSCATG00000044292) #12	PLGRKT (ENSCATG00000038359) #11	ENSCATG00000019138	ENSCATG00000039027 #14	RLN2 (ENSCATG00000039089) #15	INSL4 (ENSCATG00000040894) #16	INSL6 (ENSCATG00000029369) #17	JAK2 (ENSCATG00000024457) #18	RCL1 (ENSCATG00000034721) #19	AK3 (ENSCATG00000044404) #20	CDC37L1 (ENSCATG00000041223) #21	SPATA6L (ENSCATG00000043815) #22	PLPP6 (ENSCATG00000022355) #23	SLC1A1 (ENSCATG00000039114) #24	GLIS3 (ENSCATG00000038488) #25	ENSCATG00000030409	RFX3 (ENSCATG00000034639) #26	ENSCATG00000029808	ENSCATG00000034924	PUM3 (ENSCATG00000024880) #27	KCNV2 (ENSCATG00000037552) #28	VLDLR (ENSCATG00000033177) #29	ENSCATG00000014393	ENSCATG00000034215	SMARCA2 (ENSCATG00000031470) #30	DMRT2 (ENSCATG00000032878) #32	DMRT3 (ENSCATG00000043509) #33
Vervet Monkey	MODERN SPECIES	3	RANBP6 (ENSCSAG00000018489)	KIAA2026 (ENSCSAG00000008912)	MLANA (ENSCSAG00000008907)	ERMP1 (ENSCSAG00000008897) #7	RIC1 (ENSCSAG00000008890) #8	PDCD1LG2 (ENSCSAG00000008883) #10	CD274 (ENSCSAG00000008879) #12	PLGRKT (ENSCSAG00000008877) #11	RLN2 (ENSCSAG00000008867) #15	INSL4 (ENSCSAG00000008859) #16	INSL6 (ENSCSAG00000008855) #17	JAK2 (ENSCSAG00000008828) #18	RCL1 (ENSCSAG00000008811) #19	AK3 (ENSCSAG00000008801) #20	CDC37L1 (ENSCSAG00000008790) #21	SPATA6L (ENSCSAG00000008768) #22	PLPP6 (ENSCSAG00000018491) #23	SLC1A1 (ENSCSAG00000008723) #24	ENSCSAG00000008711 #25	RFX3 (ENSCSAG00000008704) #26	PUM3 (ENSCSAG00000008691) #27	KCNV2 (ENSCSAG00000008677) #28	VLDLR (ENSCSAG00000008671) #29	ENSCSAG00000008657	SMARCA2 (ENSCSAG00000008650) #30	DMRT2 (ENSCSAG00000008632) #32	DMRT3 (ENSCSAG00000008627) #33	DMRT1 (ENSCSAG00000008623)	KANK1 (ENSCSAG00000008611) #35	DOCK8 (ENSCSAG00000008591) #37	ENSCSAG00000018493
Rhinopithecus	ANCESTRAL SPECIES	547													ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26
Black snub-nosed monkey	MODERN SPECIES	1532													RCL1 (ENSRBIG00000035818) #19	AK3 (ENSRBIG00000031255) #20	CDC37L1 (ENSRBIG00000040333) #21	SPATA6L (ENSRBIG00000032203) #22	PLPP6 (ENSRBIG00000001345) #23	SLC1A1 (ENSRBIG00000035099) #24
Golden snub-nosed monkey	MODERN SPECIES	768													RCL1 (ENSRROG00000029781) #19	AK3 (ENSRROG00000036255) #20	CDC37L1 (ENSRROG00000036422) #21	SPATA6L (ENSRROG00000029293) #22	PLPP6 (ENSRROG00000013349) #23	SLC1A1 (ENSRROG00000032409) #24	GLIS3 (ENSRROG00000031282) #25	ENSRROG00000033006	RFX3 (ENSRROG00000033247) #26
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Gorilla	MODERN SPECIES	22	MLANA (ENSGGOG00000016251)	ERMP1 (ENSGGOG00000001865) #7	RIC1 (ENSGGOG00000004550) #8	PDCD1LG2 (ENSGGOG00000001681) #10	CD274 (ENSGGOG00000008540) #12	PLGRKT (ENSGGOG00000004113) #11	RLN1 (ENSGGOG00000005891) ##17	RLN2 (ENSGGOG00000026430) #15	INSL4 (ENSGGOG00000036799) #16	INSL6 (ENSGGOG00000008771) #17	JAK2 (ENSGGOG00000007243) #18	ENSGGOG00000022573	RCL1 (ENSGGOG00000015041) #19	AK3 (ENSGGOG00000028122) #20	CDC37L1 (ENSGGOG00000006889) #21	SPATA6L (ENSGGOG00000034964) #22	PLPP6 (ENSGGOG00000040149) #23	SLC1A1 (ENSGGOG00000000262) #24	GLIS3 (ENSGGOG00000038970) #25	RFX3 (ENSGGOG00000003805) #26	ENSGGOG00000022372	PUM3 (ENSGGOG00000006143) #27	KCNV2 (ENSGGOG00000000231) #28	VLDLR (ENSGGOG00000001362) #29	ENSGGOG00000038609	SMARCA2 (ENSGGOG00000000513) #30	ENSGGOG00000039224	DMRT2 (ENSGGOG00000025101) #32	DMRT3 (ENSGGOG00000013303) #33	DMRT1 (ENSGGOG00000013298)	KANK1 (ENSGGOG00000005466) #35
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Human	MODERN SPECIES	21	KIAA2026 (ENSG00000183354)	ERMP1 (ENSG00000099219) #7	RIC1 (ENSG00000107036) #8	PDCD1LG2 (ENSG00000197646) #10	CD274 (ENSG00000120217) #12	PLGRKT (ENSG00000107020) #11	RLN1 (ENSG00000107018) ##17	RLN2 (ENSG00000107014) #15	INSL4 (ENSG00000120211) #16	INSL6 (ENSG00000120210) #17	JAK2 (ENSG00000096968) #18	RCL1 (ENSG00000120158) #19	AK3 (ENSG00000147853) #20	CDC37L1 (ENSG00000106993) #21	PLPP6 (ENSG00000205808) #23	SPATA6L (ENSG00000106686) #22	SLC1A1 (ENSG00000106688) #24	GLIS3 (ENSG00000107249) #25	RFX3 (ENSG00000080298) #26	PUM3 (ENSG00000080608) #27	KCNV2 (ENSG00000168263) #28	VLDLR (ENSG00000147852) #29	SMARCA2 (ENSG00000080503) #30	DMRT2 (ENSG00000173253) #32	DMRT3 (ENSG00000064218) #33	DMRT1 (ENSG00000137090)	KANK1 (ENSG00000107104) #35	DOCK8 (ENSG00000107099) #37	ZNG1A (ENSG00000172785)	FOXD4 (ENSG00000170122)	WASHC1 (ENSG00000181404)
Pan	ANCESTRAL SPECIES	26	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00730000111317.d	ENSGT00390000000375 #11	ENSGT00940000154434.a.a.f ##17	ENSGT00940000154434.a.a.e #15	ENSGT00940000154434.a.b #16	ENSGT00940000154434.b #17	ENSGT00940000153498.B.a.a	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT00910000146957	ENSGT01050000244879.a.a.b #26	ENSGT00390000004049.cb	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Chimpanzee	MODERN SPECIES	22	RIC1 (ENSPTRG00000020757) #8	PDCD1LG2 (ENSPTRG00000020756) #10	CD274 (ENSPTRG00000020755) #12	ENSPTRG00000046654	PLGRKT (ENSPTRG00000020753) #11	RLN1 (ENSPTRG00000050353) ##17	RLN2 (ENSPTRG00000045482) #15	INSL4 (ENSPTRG00000020750) #16	INSL6 (ENSPTRG00000020748) #17	ENSPTRG00000052532	JAK2 (ENSPTRG00000020744) #18	RCL1 (ENSPTRG00000020743) #19	AK3 (ENSPTRG00000020742) #20	CDC37L1 (ENSPTRG00000020741) #21	PLPP6 (ENSPTRG00000044921) #23	SPATA6L (ENSPTRG00000020740) #22	SLC1A1 (ENSPTRG00000020739) #24	GLIS3 (ENSPTRG00000020738) #25	ENSPTRG00000050873	RFX3 (ENSPTRG00000048670) #26	ENSPTRG00000046907	PUM3 (ENSPTRG00000020735) #27	KCNV2 (ENSPTRG00000020734) #28	VLDLR (ENSPTRG00000020732) #29	ENSPTRG00000047815	ENSPTRG00000052144	SMARCA2 (ENSPTRG00000051168) #30	DMRT2 (ENSPTRG00000020730) #32	DMRT3 (ENSPTRG00000020729) #33	DMRT1 (ENSPTRG00000020728)	KANK1 (ENSPTRG00000041819) #35
Bonobo	MODERN SPECIES	22	MLANA (ENSPPAG00000038099)	ERMP1 (ENSPPAG00000039739) #7	RIC1 (ENSPPAG00000039773) #8	PDCD1LG2 (ENSPPAG00000030710) #10	CD274 (ENSPPAG00000034663) #12	ENSPPAG00000031342	PLGRKT (ENSPPAG00000030588) #11	RLN1 (ENSPPAG00000029999) ##17	RLN2 (ENSPPAG00000025312) #15	INSL6 (ENSPPAG00000002535) #17	ENSPPAG00000038776	JAK2 (ENSPPAG00000019000) #18	RCL1 (ENSPPAG00000037958) #19	AK3 (ENSPPAG00000033568) #20	CDC37L1 (ENSPPAG00000038614) #21	SPATA6L (ENSPPAG00000010175) #22	SLC1A1 (ENSPPAG00000027502) #24	GLIS3 (ENSPPAG00000043097) #25	ENSPPAG00000011368	RFX3 (ENSPPAG00000039978) #26	ENSPPAG00000029157	PUM3 (ENSPPAG00000041337) #27	KCNV2 (ENSPPAG00000040791) #28	VLDLR (ENSPPAG00000029389) #29	ENSPPAG00000042393	ENSPPAG00000042332	SMARCA2 (ENSPPAG00000038717) #30	DMRT2 (ENSPPAG00000033739) #32	ENSPPAG00000027768 #33	DMRT1 (ENSPPAG00000036830)	DOCK8 (ENSPPAG00000041152) #37
Orangutan	MODERN SPECIES	22	KIAA2026 (ENSPPYG00000029402)	MLANA (ENSPPYG00000019233)	ERMP1 (ENSPPYG00000019234) #7	RIC1 (ENSPPYG00000019235) #8	PDCD1LG2 (ENSPPYG00000019236) #10	CD274 (ENSPPYG00000019237) #12	PLGRKT (ENSPPYG00000019238) #11	RLN1 (ENSPPYG00000019239) ##17	RLN2 (ENSPPYG00000040733) #15	INSL4 (ENSPPYG00000019240) #16	INSL6 (ENSPPYG00000019242) #17	JAK2 (ENSPPYG00000019243) #18	RCL1 (ENSPPYG00000019244) #19	AK3 (ENSPPYG00000019245) #20	CDC37L1 (ENSPPYG00000019246) #21	SPATA6L (ENSPPYG00000019247) #22	PLPP6 (ENSPPYG00000019248) #23	SLC1A1 (ENSPPYG00000019249) #24	GLIS3 (ENSPPYG00000019250) #25	RFX3 (ENSPPYG00000019253) #26	ENSPPYG00000019254	PUM3 (ENSPPYG00000019255) #27	KCNV2 (ENSPPYG00000019256) #28	VLDLR (ENSPPYG00000019257) #29	ENSPPYG00000041078	SMARCA2 (ENSPPYG00000019258) #30	DMRT2 (ENSPPYG00000035747) #32	DMRT3 (ENSPPYG00000019260) #33	DMRT1 (ENSPPYG00000019261)	KANK1 (ENSPPYG00000019262) #35	DOCK8 (ENSPPYG00000019264) #37
Gibbon	MODERN SPECIES	10	RIC1 (ENSNLEG00000009045) #8	PDCD1LG2 (ENSNLEG00000009028) #10	CD274 (ENSNLEG00000009009) #12	ENSNLEG00000028615	PLGRKT (ENSNLEG00000008991) #11	RLN1 (ENSNLEG00000008986) ##17	RLN2 (ENSNLEG00000008980) #15	INSL4 (ENSNLEG00000008978) #16	INSL6 (ENSNLEG00000008974) #17	ENSNLEG00000027963	JAK2 (ENSNLEG00000008897) #18	RCL1 (ENSNLEG00000008891) #19	AK3 (ENSNLEG00000008885) #20	CDC37L1 (ENSNLEG00000008879) #21	ENSNLEG00000028049 #23	SPATA6L (ENSNLEG00000008860) #22	SLC1A1 (ENSNLEG00000031411) #24	ENSNLEG00000035119 #25	ENSNLEG00000034817 #25	ENSNLEG00000028743	RFX3 (ENSNLEG00000008785) #26	ENSNLEG00000029981	PUM3 (ENSNLEG00000008712) #27	KCNV2 (ENSNLEG00000008701) #28	VLDLR (ENSNLEG00000008596) #29	ENSNLEG00000008695	ENSNLEG00000029055	SMARCA2 (ENSNLEG00000008575) #30	DMRT2 (ENSNLEG00000008564) #32	DMRT3 (ENSNLEG00000008556) #33	DMRT1 (ENSNLEG00000008544)
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Cebidae	ANCESTRAL SPECIES	7	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Marmoset	MODERN SPECIES		ERMP1 (ENSCJAG00000011528) #7	RIC1 (ENSCJAG00000011447) #8	ENSCJAG00000048011	PDCD1LG2 (ENSCJAG00000048652) #10	CD274 (ENSCJAG00000011388) #12	PLGRKT (ENSCJAG00000011374) #11	ENSCJAG00000038187 #15	INSL6 (ENSCJAG00000011358) #17	ENSCJAG00000076577	JAK2 (ENSCJAG00000011228) #18	RCL1 (ENSCJAG00000011202) #19	ENSCJAG00000059464	CDC37L1 (ENSCJAG00000011155) #21	AK3 (ENSCJAG00000011188) #20	PLPP6 (ENSCJAG00000063898) #23	SPATA6L (ENSCJAG00000011136) #22	SLC1A1 (ENSCJAG00000011113) #24	ENSCJAG00000073768	GLIS3 (ENSCJAG00000011083) #25	RFX3 (ENSCJAG00000010996) #26	PUM3 (ENSCJAG00000010917) #27	KCNV2 (ENSCJAG00000042809) #28	VLDLR (ENSCJAG00000010772) #29	ENSCJAG00000042690	SMARCA2 (ENSCJAG00000010710) #30	DMRT2 (ENSCJAG00000010690) #32	DMRT3 (ENSCJAG00000063670) #33	ENSCJAG00000084547 ##9	KANK1 (ENSCJAG00000010595) #35	DOCK8 (ENSCJAG00000010485) #37	ENSCJAG00000078334
Cebidae_a	ANCESTRAL SPECIES	92										ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00530000063402.a.h	ENSGT00390000004049.ab	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Bolivian squirrel monkey	MODERN SPECIES	118										RCL1 (ENSSBOG00000026369) #19	ENSSBOG00000018606	AK3 (ENSSBOG00000002841) #20	CDC37L1 (ENSSBOG00000032737) #21	PLPP6 (ENSSBOG00000019035) #23	ENSSBOG00000022998	SPATA6L (ENSSBOG00000026985) #22	SLC1A1 (ENSSBOG00000032684) #24	ENSSBOG00000019687	GLIS3 (ENSSBOG00000032997) #25	RFX3 (ENSSBOG00000031103) #26	ENSSBOG00000016907	ENSSBOG00000026932	ENSSBOG00000022458	PUM3 (ENSSBOG00000028066) #27	KCNV2 (ENSSBOG00000023504) #28	VLDLR (ENSSBOG00000031091) #29	ENSSBOG00000020747	SMARCA2 (ENSSBOG00000034827) #30	ENSSBOG00000019886	DMRT2 (ENSSBOG00000010665) #32	DMRT3 (ENSSBOG00000027585) #33
Capuchin	MODERN SPECIES	227										INSL6 (ENSCCAG00000028704) #17	JAK2 (ENSCCAG00000022686) #18	RCL1 (ENSCCAG00000033505) #19	AK3 (ENSCCAG00000024553) #20	CDC37L1 (ENSCCAG00000036002) #21	PLPP6 (ENSCCAG00000017149) #23	SPATA6L (ENSCCAG00000019855) #22	SLC1A1 (ENSCCAG00000024828) #24	GLIS3 (ENSCCAG00000025272) #25	RFX3 (ENSCCAG00000030352) #26	ENSCCAG00000032475	ENSCCAG00000034048	ENSCCAG00000023250	PUM3 (ENSCCAG00000032650) #27	KCNV2 (ENSCCAG00000006608) #28	VLDLR (ENSCCAG00000034631) #29	ENSCCAG00000024458	ENSCCAG00000032291	SMARCA2 (ENSCCAG00000030636) #30
Mas night monkey	MODERN SPECIES	599	KIAA2026 (ENSANAG00000028777)	MLANA (ENSANAG00000036926)	ERMP1 (ENSANAG00000034115) #7	RIC1 (ENSANAG00000037454) #8	ENSANAG00000025398	PDCD1LG2 (ENSANAG00000020809) #10	ENSANAG00000019149	CD274 (ENSANAG00000028618) #12	PLGRKT (ENSANAG00000022854) #11	ENSANAG00000023659 #15	JAK2 (ENSANAG00000027034) #18	RCL1 (ENSANAG00000037372) #19	AK3 (ENSANAG00000037726) #20	CDC37L1 (ENSANAG00000028426) #21	ENSANAG00000029767	SPATA6L (ENSANAG00000030395) #22	PLPP6 (ENSANAG00000019076) #23	SLC1A1 (ENSANAG00000032125) #24	GLIS3 (ENSANAG00000038022) #25	RFX3 (ENSANAG00000038145) #26	ENSANAG00000036903	PUM3 (ENSANAG00000024520) #27	KCNV2 (ENSANAG00000035114) #28	VLDLR (ENSANAG00000020851) #29	ENSANAG00000029407	SMARCA2 (ENSANAG00000026498) #30	ENSANAG00000018592	DMRT2 (ENSANAG00000020591) #32	DMRT3 (ENSANAG00000027840) #33	DMRT1 (ENSANAG00000030765)
Tarsier	MODERN SPECIES	1260																SPATA6L (ENSTSYG00000005363) #22	SLC1A1 (ENSTSYG00000008532) #24
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896.q #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896.q #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896.q #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750	ENSGT00640000091523.s
Coquerels sifaka	MODERN SPECIES	549												RCL1 (ENSPCOG00000009611) #19	ENSPCOG00000024436 #20	CDC37L1 (ENSPCOG00000025983) #21	PLPP6 (ENSPCOG00000013586) #23	SPATA6L (ENSPCOG00000001879) #22	SLC1A1 (ENSPCOG00000013653) #24	GLIS3 (ENSPCOG00000022619) #25	RFX3 (ENSPCOG00000022172) #26	PUM3 (ENSPCOG00000027325) #27	KCNV2 (ENSPCOG00000023607) #28	VLDLR (ENSPCOG00000026506) #29	ENSPCOG00000019796	ENSPCOG00000026110	SMARCA2 (ENSPCOG00000025709) #30
Greater bamboo lemur	MODERN SPECIES	152						PDCD1LG2 (ENSPSMG00000024781) #10	CD274 (ENSPSMG00000024783) #12	PLGRKT (ENSPSMG00000024787) #11	ENSPSMG00000024791 #15	INSL6 (ENSPSMG00000024793) #17	ENSPSMG00000024795	JAK2 (ENSPSMG00000024838) #18	RCL1 (ENSPSMG00000024848) #19	AK3 (ENSPSMG00000024859) #20	CDC37L1 (ENSPSMG00000024864) #21	SPATA6L (ENSPSMG00000024878) #22	PLPP6 (ENSPSMG00000024881) #23	SLC1A1 (ENSPSMG00000024890) #24	GLIS3 (ENSPSMG00000024897) #25	RFX3 (ENSPSMG00000024938) #26	ENSPSMG00000024950	ENSPSMG00000024956 #27	KCNV2 (ENSPSMG00000024960) #28	VLDLR (ENSPSMG00000025041) #29	ENSPSMG00000025075	SMARCA2 (ENSPSMG00000025173) #30	ENSPSMG00000025195	DMRT2 (ENSPSMG00000025206) #32	DMRT3 (ENSPSMG00000025210) #33	DMRT1 (ENSPSMG00000025222)	KANK1 (ENSPSMG00000025243) #35
Mouse lemur	MODERN SPECIES	1	ENSMICG00000026566	KIAA2026 (ENSMICG00000032366)	MLANA (ENSMICG00000048054)	ERMP1 (ENSMICG00000016329) #7	ENSMICG00000030745	RIC1 (ENSMICG00000016293) #8	PDCD1LG2 (ENSMICG00000004284) #10	CD274 (ENSMICG00000035171) #12	PLGRKT (ENSMICG00000031798) #11	ENSMICG00000043730 #15	INSL6 (ENSMICG00000044551) #17	JAK2 (ENSMICG00000003885) #18	RCL1 (ENSMICG00000015562) #19	ENSMICG00000013112 #20	CDC37L1 (ENSMICG00000017690) #21	SPATA6L (ENSMICG00000017688) #22	SLC1A1 (ENSMICG00000005171) #24	ENSMICG00000031277 #25	ENSMICG00000041775 #25	RFX3 (ENSMICG00000011871) #26	ENSMICG00000029542	PUM3 (ENSMICG00000045916) #27	KCNV2 (ENSMICG00000005193) #28	VLDLR (ENSMICG00000005182) #29	ENSMICG00000005190	SMARCA2 (ENSMICG00000005162) #30	DMRT2 (ENSMICG00000010426) #32	DMRT3 (ENSMICG00000044854) #33	DMRT1 (ENSMICG00000010417)	KANK1 (ENSMICG00000010410) #35	DOCK8 (ENSMICG00000008267) #37
Bushbaby	MODERN SPECIES	121	ENSOGAG00000004525	RANBP6 (ENSOGAG00000010992)	ENSOGAG00000032415	ENSOGAG00000030737	MLANA (ENSOGAG00000010986)	ERMP1 (ENSOGAG00000012020) #7	RIC1 (ENSOGAG00000012009) #8	PDCD1LG2 (ENSOGAG00000003284) #10	CD274 (ENSOGAG00000003282) #12	PLGRKT (ENSOGAG00000003280) #11	ENSOGAG00000009500 #15	JAK2 (ENSOGAG00000012246) #18	RCL1 (ENSOGAG00000007480) #19	AK3 (ENSOGAG00000007477) #20	CDC37L1 (ENSOGAG00000007475) #21	SPATA6L (ENSOGAG00000007468) #22	PLPP6 (ENSOGAG00000007472) #23	SLC1A1 (ENSOGAG00000007464) #24	GLIS3 (ENSOGAG00000007376) #25	RFX3 (ENSOGAG00000007762) #26	ENSOGAG00000008125 #27	KCNV2 (ENSOGAG00000030433) #28	VLDLR (ENSOGAG00000013312) #29	SMARCA2 (ENSOGAG00000017053) #30	ENSOGAG00000025218	DMRT2 (ENSOGAG00000001994) #32	DMRT3 (ENSOGAG00000026565) #33	DMRT1 (ENSOGAG00000001989)	KANK1 (ENSOGAG00000001985) #35	ENSOGAG00000031226	DOCK8 (ENSOGAG00000004639) #37
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Tree shrew	MODERN SPECIES	183														AK3 (ENSTBEG00000008054) #20	CDC37L1 (ENSTBEG00000007827) #21	ENSTBEG00000006755 #22
Glires	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Rodentia	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Muroidea	ANCESTRAL SPECIES	1	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Golden Hamster	MODERN SPECIES	617	ENSMAUG00000010025	Ranbp6 (ENSMAUG00000002166)	9930021J03Rik (ENSMAUG00000009640)	Mlana (ENSMAUG00000006750)	Ermp1 (ENSMAUG00000008682) #7	Ric1 (ENSMAUG00000008752) #8	Pdcd1lg2 (ENSMAUG00000007055) #10	Cd274 (ENSMAUG00000008788) #12	Plgrkt (ENSMAUG00000007601) #11	Rln1 (ENSMAUG00000008598) #15	Insl6 (ENSMAUG00000008553) #17	Jak2 (ENSMAUG00000008571) #18	Rcl1 (ENSMAUG00000008922) #19	Ak3 (ENSMAUG00000008253) #20	Cdc37l1 (ENSMAUG00000008847) #21	Spata6l (ENSMAUG00000010530) #22	Plpp6 (ENSMAUG00000001915) #23	Slc1a1 (ENSMAUG00000009046) #24	Rfx3 (ENSMAUG00000009987) #26	Pum3 (ENSMAUG00000009733) #27	Kcnv2 (ENSMAUG00000008727) #28	ENSMAUG00000008768	ENSMAUG00000008613 #30	ENSMAUG00000008807 #30	ENSMAUG00000010070 #30	Dmrt2 (ENSMAUG00000010038) #32	Dmrt3 (ENSMAUG00000008904) #33	ENSMAUG00000008975	Kank1 (ENSMAUG00000009263) #35	ENSMAUG00000009191 #37	ENSMAUG00000009538 #37
Chinese hamster chok1gshd	MODERN SPECIES	401	Ranbp6 (ENSCGRG00001012447)	9930021J03Rik (ENSCGRG00001008137)	Mlana (ENSCGRG00001024579)	Ermp1 (ENSCGRG00001021468) #7	Ric1 (ENSCGRG00001016728) #8	Pdcd1lg2 (ENSCGRG00001015183) #10	ENSCGRG00001013276	Cd274 (ENSCGRG00001024294) #12	Plgrkt (ENSCGRG00001023695) #11	Insl6 (ENSCGRG00001020673) #17	Jak2 (ENSCGRG00001015840) #18	Rcl1 (ENSCGRG00001013748) #19	AK3 (ENSCGRG00001007296) #20	Cdc37l1 (ENSCGRG00001000264) #21	Plpp6 (ENSCGRG00001012981) #23	Spata6l (ENSCGRG00001002881) #22	ENSCGRG00001023585	Slc1a1 (ENSCGRG00001022336) #24	Glis3 (ENSCGRG00001014233) #25	Rfx3 (ENSCGRG00001021745) #26	Pum3 (ENSCGRG00001016402) #27	Kcnv2 (ENSCGRG00001018140) #28	ENSCGRG00001017895	Vldlr (ENSCGRG00001014399) #29	Smarca2 (ENSCGRG00001002323) #30	Dmrt2 (ENSCGRG00001007562) #32	Dmrt3 (ENSCGRG00001005036) #33	Dmrt1 (ENSCGRG00001000625)	Kank1 (ENSCGRG00001020355) #35	Dock8 (ENSCGRG00001013079) #37	Cbwd1 (ENSCGRG00001020851)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Northern American deer mouse	MODERN SPECIES		Ranbp6 (ENSPEMG00000013745)	9930021J03Rik (ENSPEMG00000008620)	Mlana (ENSPEMG00000004309)	Ermp1 (ENSPEMG00000022988) #7	Ric1 (ENSPEMG00000022073) #8	Pdcd1lg2 (ENSPEMG00000021972) #10	Cd274 (ENSPEMG00000022427) #12	Plgrkt (ENSPEMG00000022507) #11	Rln1 (ENSPEMG00000022594) #15	ENSPEMG00000023396 #17	Jak2 (ENSPEMG00000022083) #18	Rcl1 (ENSPEMG00000023275) #19	Ak3 (ENSPEMG00000022781) #20	Cdc37l1 (ENSPEMG00000000344) #21	Plpp6 (ENSPEMG00000007181) #23	Spata6l (ENSPEMG00000023122) #22	ENSPEMG00000021571	Slc1a1 (ENSPEMG00000009611) #24	ENSPEMG00000004286	Glis3 (ENSPEMG00000020002) #25	Rfx3 (ENSPEMG00000019731) #26	ENSPEMG00000019340 #27	ENSPEMG00000030423	Kcnv2 (ENSPEMG00000020138) #28	Vldlr (ENSPEMG00000022250) #29	ENSPEMG00000021666	Smarca2 (ENSPEMG00000019821) #30	Dmrt2 (ENSPEMG00000019767) #32	Dmrt3 (ENSPEMG00000019990) #33	Dmrt1 (ENSPEMG00000019943)	Kank1 (ENSPEMG00000013916) #35
Prairie vole	MODERN SPECIES	16	Ranbp6 (ENSMOCG00000010374)	9930021J03Rik (ENSMOCG00000020946)	Mlana (ENSMOCG00000005161)	ENSMOCG00000019292 #7	Ric1 (ENSMOCG00000018339) #8	Pdcd1lg2 (ENSMOCG00000002927) #10	Cd274 (ENSMOCG00000016738) #12	Plgrkt (ENSMOCG00000013870) #11	Rln1 (ENSMOCG00000012108) #15	Insl6 (ENSMOCG00000015208) #17	Jak2 (ENSMOCG00000013580) #18	Rcl1 (ENSMOCG00000012145) #19	Ak3 (ENSMOCG00000010856) #20	Cdc37l1 (ENSMOCG00000018341) #21	Plpp6 (ENSMOCG00000001135) #23	Spata6l (ENSMOCG00000022082) #22	ENSMOCG00000018225	Slc1a1 (ENSMOCG00000017507) #24	Glis3 (ENSMOCG00000009953) #25	Rfx3 (ENSMOCG00000018931) #26	ENSMOCG00000019519 #27	Kcnv2 (ENSMOCG00000014872) #28	Vldlr (ENSMOCG00000004269) #29	Smarca2 (ENSMOCG00000001611) #30	Dmrt2 (ENSMOCG00000016701) #32	Dmrt3 (ENSMOCG00000015270) #33	ENSMOCG00000017971	Kank1 (ENSMOCG00000020725) #35	Dock8 (ENSMOCG00000014249) #37	Cbwd1 (ENSMOCG00000015974)	Pgm5 (ENSMOCG00000011710)
Murinae	ANCESTRAL SPECIES		ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Mus	ANCESTRAL SPECIES		ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00900000143396	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Mus_A	ANCESTRAL SPECIES	16	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00900000143396	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Ryukyu mouse	MODERN SPECIES	10	Ranbp6 (MGP_CAROLIEiJ_G0022864)	9930021J03Rik (MGP_CAROLIEiJ_G0022863)	Mlana (MGP_CAROLIEiJ_G0022862)	Ermp1 (MGP_CAROLIEiJ_G0022861) #7	Ric1 (MGP_CAROLIEiJ_G0022860) #8	Pdcd1lg2 (MGP_CAROLIEiJ_G0022859) #10	Cd274 (MGP_CAROLIEiJ_G0022858) #12	Plgrkt (MGP_CAROLIEiJ_G0022857) #11	Rln1 (MGP_CAROLIEiJ_G0022856) #15	Insl6 (MGP_CAROLIEiJ_G0022855) #17	Jak2 (MGP_CAROLIEiJ_G0022854) #18	Rcl1 (MGP_CAROLIEiJ_G0022853) #19	Ak3 (MGP_CAROLIEiJ_G0022852) #20	Cdc37l1 (MGP_CAROLIEiJ_G0022851) #21	Plpp6 (MGP_CAROLIEiJ_G0022850) #23	Spata6l (MGP_CAROLIEiJ_G0022849) #22	Slc1a1 (MGP_CAROLIEiJ_G0022848) #24	Glis3 (MGP_CAROLIEiJ_G0022847) #25	Rfx3 (MGP_CAROLIEiJ_G0022846) #26	Pum3 (MGP_CAROLIEiJ_G0022845) #27	Kcnv2 (MGP_CAROLIEiJ_G0022844) #28	Vldlr (MGP_CAROLIEiJ_G0022843) #29	MGP_CAROLIEiJ_G0022842	Smarca2 (MGP_CAROLIEiJ_G0022841) #30	Dmrt2 (MGP_CAROLIEiJ_G0022840) #32	Dmrt3 (MGP_CAROLIEiJ_G0022839) #33	Dmrt1 (MGP_CAROLIEiJ_G0022838)	Kank1 (MGP_CAROLIEiJ_G0022837) #35	Dock8 (MGP_CAROLIEiJ_G0022836) #37	Cbwd1 (MGP_CAROLIEiJ_G0022835)	Foxd4 (MGP_CAROLIEiJ_G0022834)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00900000143396	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Mouse	MODERN SPECIES	10	Ranbp6 (ENSMUSG00000074909)	9930021J03Rik (ENSMUSG00000046138)	Mlana (ENSMUSG00000024806)	Ermp1 (ENSMUSG00000046324) #7	Ric1 (ENSMUSG00000038658) #8	Pdcd1lg2 (ENSMUSG00000016498) #10	Cd274 (ENSMUSG00000016496) #12	Plgrkt (ENSMUSG00000016495) #11	Rln1 (ENSMUSG00000039097) #15	Insl6 (ENSMUSG00000050957) #17	Jak2 (ENSMUSG00000024789) #18	Rcl1 (ENSMUSG00000024785) #19	Ak3 (ENSMUSG00000024782) #20	Cdc37l1 (ENSMUSG00000024780) #21	Plpp6 (ENSMUSG00000040105) #23	Spata6l (ENSMUSG00000064202) #22	Slc1a1 (ENSMUSG00000024935) #24	Glis3 (ENSMUSG00000052942) #25	Rfx3 (ENSMUSG00000040929) #26	Pum3 (ENSMUSG00000041360) #27	Kcnv2 (ENSMUSG00000047298) #28	Vldlr (ENSMUSG00000024924) #29	Gm815 (ENSMUSG00000074913)	Smarca2 (ENSMUSG00000024921) #30	Dmrt2 (ENSMUSG00000048138) #32	Dmrt3 (ENSMUSG00000042372) #33	Dmrt1 (ENSMUSG00000024837)	Kank1 (ENSMUSG00000032702) #35	Dock8 (ENSMUSG00000052085) #37	Cbwd1 (ENSMUSG00000024878)	Foxd4 (ENSMUSG00000051490)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00900000143396	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
spretus	MODERN SPECIES	10	Ranbp6 (MGP_SPRETEiJ_G0023782)	9930021J03Rik (MGP_SPRETEiJ_G0023781)	Mlana (MGP_SPRETEiJ_G0023780)	Ermp1 (MGP_SPRETEiJ_G0023779) #7	Ric1 (MGP_SPRETEiJ_G0023778) #8	Pdcd1lg2 (MGP_SPRETEiJ_G0023777) #10	Cd274 (MGP_SPRETEiJ_G0023776) #12	Plgrkt (MGP_SPRETEiJ_G0023775) #11	Rln1 (MGP_SPRETEiJ_G0023774) #15	Insl6 (MGP_SPRETEiJ_G0023773) #17	Jak2 (MGP_SPRETEiJ_G0023772) #18	Rcl1 (MGP_SPRETEiJ_G0023771) #19	Ak3 (MGP_SPRETEiJ_G0023770) #20	Cdc37l1 (MGP_SPRETEiJ_G0023769) #21	Plpp6 (MGP_SPRETEiJ_G0023768) #23	Spata6l (MGP_SPRETEiJ_G0023767) #22	Slc1a1 (MGP_SPRETEiJ_G0023766) #24	Glis3 (MGP_SPRETEiJ_G0023765) #25	Rfx3 (MGP_SPRETEiJ_G0023764) #26	Pum3 (MGP_SPRETEiJ_G0023763) #27	Kcnv2 (MGP_SPRETEiJ_G0023762) #28	Vldlr (MGP_SPRETEiJ_G0023761) #29	MGP_SPRETEiJ_G0023760	Smarca2 (MGP_SPRETEiJ_G0023759) #30	Dmrt2 (MGP_SPRETEiJ_G0023758) #32	Dmrt3 (MGP_SPRETEiJ_G0023757) #33	Kank1 (MGP_SPRETEiJ_G0023756) #35	Dock8 (MGP_SPRETEiJ_G0023755) #37	Cbwd1 (MGP_SPRETEiJ_G0023754)	Foxd4 (MGP_SPRETEiJ_G0023753)	Pgm5 (MGP_SPRETEiJ_G0023752)
Steppe mouse	MODERN SPECIES	3342	9930021J03Rik (ENSMSIG00000025540)	Mlana (ENSMSIG00000025512)	Ermp1 (ENSMSIG00000025448) #7	Ric1 (ENSMSIG00000025350) #8	Pdcd1lg2 (ENSMSIG00000025335) #10	Cd274 (ENSMSIG00000025326) #12	Plgrkt (ENSMSIG00000025313) #11	Rln1 (ENSMSIG00000025309) #15	Insl6 (ENSMSIG00000025305) #17	Jak2 (ENSMSIG00000025287) #18	Rcl1 (ENSMSIG00000025273) #19	Ak3 (ENSMSIG00000025266) #20	ENSMSIG00000025242	Cdc37l1 (ENSMSIG00000025086) #21	Plpp6 (ENSMSIG00000025080) #23	Spata6l (ENSMSIG00000024987) #22	ENSMSIG00000024973	Slc1a1 (ENSMSIG00000024962) #24
Shrew mouse	MODERN SPECIES		Ranbp6 (MGP_PahariEiJ_G0014357)	9930021J03Rik (MGP_PahariEiJ_G0014356)	Mlana (MGP_PahariEiJ_G0014355)	Ermp1 (MGP_PahariEiJ_G0014354) #7	Ric1 (MGP_PahariEiJ_G0014353) #8	Pdcd1lg2 (MGP_PahariEiJ_G0014352) #10	Cd274 (MGP_PahariEiJ_G0014351) #12	MGP_PahariEiJ_G0014350	Rln1 (MGP_PahariEiJ_G0014349) #15	Insl6 (MGP_PahariEiJ_G0014348) #17	Jak2 (MGP_PahariEiJ_G0014347) #18	Rcl1 (MGP_PahariEiJ_G0014346) #19	Ak3 (MGP_PahariEiJ_G0014345) #20	Cdc37l1 (MGP_PahariEiJ_G0014344) #21	Plpp6 (MGP_PahariEiJ_G0014343) #23	Spata6l (MGP_PahariEiJ_G0014342) #22	Slc1a1 (MGP_PahariEiJ_G0014341) #24	Glis3 (MGP_PahariEiJ_G0014340) #25	Rfx3 (MGP_PahariEiJ_G0014339) #26	Pum3 (MGP_PahariEiJ_G0014338) #27	Kcnv2 (MGP_PahariEiJ_G0014337) #28	Vldlr (MGP_PahariEiJ_G0014336) #29	MGP_PahariEiJ_G0014335	Smarca2 (MGP_PahariEiJ_G0014334) #30	Dmrt2 (MGP_PahariEiJ_G0014333) #32	Dmrt3 (MGP_PahariEiJ_G0014332) #33	Dmrt1 (MGP_PahariEiJ_G0014331)	Kank1 (MGP_PahariEiJ_G0014330) #35	Dock8 (MGP_PahariEiJ_G0014329) #37	Cbwd1 (MGP_PahariEiJ_G0014328)	Foxd4 (MGP_PahariEiJ_G0014327)
Rat	MODERN SPECIES		RGD1311595 (ENSRNOG00000026942)	Mlana (ENSRNOG00000036608)	Ermp1 (ENSRNOG00000010915) #7	Ric1 (ENSRNOG00000016172) #8	Pdcd1lg2 (ENSRNOG00000016136) #10	Cd274 (ENSRNOG00000016112) #12	Plgrkt (ENSRNOG00000015932) #11	Rln1 (ENSRNOG00000060867) #15	Insl6 (ENSRNOG00000015868) #17	Jak2 (ENSRNOG00000059968) #18	Rcl1 (ENSRNOG00000015491) #19	Ak3 (ENSRNOG00000052506) #20	Cdc37l1 (ENSRNOG00000010967) #21	RGD1565057 (ENSRNOG00000069618)	Plpp6 (ENSRNOG00000015268) #23	Spata6l (ENSRNOG00000015137) #22	ENSRNOG00000065811	Slc1a1 (ENSRNOG00000014816) #24	Glis3 (ENSRNOG00000014768) #25	ENSRNOG00000066761	Rfx3 (ENSRNOG00000014486) #26	Pum3 (ENSRNOG00000012574) #27	Kcnv2 (ENSRNOG00000012566) #28	ENSRNOG00000062591	Vldlr (ENSRNOG00000027491) #29	ENSRNOG00000069446	Smarca2 (ENSRNOG00000011931) #30	ENSRNOG00000062555	Dmrt2 (ENSRNOG00000016301) #32	Dmrt3 (ENSRNOG00000016284) #33	Dmrt1 (ENSRNOG00000016075)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166												Jak2 (ENSNGAG00000000096) #18	Rcl1 (ENSNGAG00000015327) #19	Ak3 (ENSNGAG00000016647) #20	Cdc37l1 (ENSNGAG00000018155) #21	Spata6l (ENSNGAG00000017948) #22	Plpp6 (ENSNGAG00000014756) #23	Slc1a1 (ENSNGAG00000014723) #24	ENSNGAG00000018137	Glis3 (ENSNGAG00000006111) #25	Rfx3 (ENSNGAG00000016470) #26	Pum3 (ENSNGAG00000019468) #27	Kcnv2 (ENSNGAG00000020439) #28	Vldlr (ENSNGAG00000003966) #29	ENSNGAG00000012912	Smarca2 (ENSNGAG00000000108) #30	ENSNGAG00000013866	Dmrt2 (ENSNGAG00000020041) #32	Dmrt3 (ENSNGAG00000020423) #33	Dmrt1 (ENSNGAG00000001295)
Lesser Egyptian jerboa	MODERN SPECIES	50	Gldc (ENSJJAG00000023082)	Uhrf2 (ENSJJAG00000023371)	ENSJJAG00000006290	Ranbp6 (ENSJJAG00000010492)	9930021J03Rik (ENSJJAG00000016877)	Mlana (ENSJJAG00000022272)	Ermp1 (ENSJJAG00000021848) #7	Ric1 (ENSJJAG00000014841) #8	Plgrkt (ENSJJAG00000010846) #11	Rln1 (ENSJJAG00000013838) #15	Jak2 (ENSJJAG00000012271) #18	ENSJJAG00000022803 #19	Ak3 (ENSJJAG00000023388) #20	Cdc37l1 (ENSJJAG00000024330) #21	Plpp6 (ENSJJAG00000011277) #23	Spata6l (ENSJJAG00000022941) #22	ENSJJAG00000020462	Slc1a1 (ENSJJAG00000018507) #24	Glis3 (ENSJJAG00000011399) #25	ENSJJAG00000024335	Rfx3 (ENSJJAG00000010280) #26	ENSJJAG00000010263	Pum3 (ENSJJAG00000012563) #27	Kcnv2 (ENSJJAG00000016782) #28	ENSJJAG00000000409	Vldlr (ENSJJAG00000016440) #29	Smarca2 (ENSJJAG00000010867) #30	ENSJJAG00000010719	Dmrt2 (ENSJJAG00000023959) #32	Dmrt3 (ENSJJAG00000022573) #33	Dmrt1 (ENSJJAG00000016690)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a.c.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Naked mole-rat female	MODERN SPECIES	3	ENSHGLG00000048843	ENSHGLG00000016359	IL33 (ENSHGLG00000017894)	RANBP6 (ENSHGLG00000021232)	KIAA2026 (ENSHGLG00000018909)	ENSHGLG00000034164	ERMP1 (ENSHGLG00000018719) #7	RIC1 (ENSHGLG00000011155) #8	CD274 (ENSHGLG00000016786) #12	PLGRKT (ENSHGLG00000037089) #11	ENSHGLG00000019539 #15	JAK2 (ENSHGLG00000011890) #18	ENSHGLG00000016452 #19	ENSHGLG00000018975 #20	CDC37L1 (ENSHGLG00000012329) #21	SPATA6L (ENSHGLG00000018477) #22	PLPP6 (ENSHGLG00000038858) #23	SLC1A1 (ENSHGLG00000015155) #24	ENSHGLG00000017534	ENSHGLG00000032696	ENSHGLG00000015091 #25	ENSHGLG00000018913 #26	ENSHGLG00000019207	ENSHGLG00000042585	ENSHGLG00000016314	ENSHGLG00000015868 #27	KCNV2 (ENSHGLG00000015810) #28	VLDLR (ENSHGLG00000016113) #29	ENSHGLG00000016566	ENSHGLG00000035043	ENSHGLG00000005215 #30
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a.c.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b.d #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Guinea pig	MODERN SPECIES	21	IL33 (ENSCPOG00000030316)	RANBP6 (ENSCPOG00000005398)	KIAA2026 (ENSCPOG00000013437)	ENSCPOG00000039570	MLANA (ENSCPOG00000013436)	ERMP1 (ENSCPOG00000013432) #7	RIC1 (ENSCPOG00000013425) #8	CD274 (ENSCPOG00000004371) #12	PLGRKT (ENSCPOG00000012720) #11	ENSCPOG00000001365 #15	INSL6 (ENSCPOG00000002694) #17	JAK2 (ENSCPOG00000014653) #18	RCL1 (ENSCPOG00000015354) #19	AK3 (ENSCPOG00000011927) #20	CDC37L1 (ENSCPOG00000030938) #21	SPATA6L (ENSCPOG00000012925) #22	PLPP6 (ENSCPOG00000012931) #23	SLC1A1 (ENSCPOG00000011151) #24	ENSCPOG00000030794	GLIS3 (ENSCPOG00000005523) #25	RFX3 (ENSCPOG00000000900) #26	ENSCPOG00000008552 #27	KCNV2 (ENSCPOG00000032893) #28	VLDLR (ENSCPOG00000007685) #29	SMARCA2 (ENSCPOG00000005475) #30	DMRT2 (ENSCPOG00000008452) #32	DMRT3 (ENSCPOG00000005912) #33	DMRT1 (ENSCPOG00000005909)	KANK1 (ENSCPOG00000008389) #35	DOCK8 (ENSCPOG00000008366) #37	ENSCPOG00000019718
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00390000008296.b.a.a	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a.c.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00900000143153	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b.d #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Degu	MODERN SPECIES	128	RANBP6 (ENSODEG00000019173)	ENSODEG00000019201	KIAA2026 (ENSODEG00000005381)	MLANA (ENSODEG00000005368)	ERMP1 (ENSODEG00000005254) #7	RIC1 (ENSODEG00000004340) #8	CD274 (ENSODEG00000004298) #12	PLGRKT (ENSODEG00000004267) #11	INSL6 (ENSODEG00000004231) #17	ENSODEG00000004220	JAK2 (ENSODEG00000004208) #18	RCL1 (ENSODEG00000004151) #19	ENSODEG00000004121 #20	CDC37L1 (ENSODEG00000004185) #21	PLPP6 (ENSODEG00000019026) #23	SPATA6L (ENSODEG00000004066) #22	ENSODEG00000003949	SLC1A1 (ENSODEG00000003884) #24	GLIS3 (ENSODEG00000003731) #25	RFX3 (ENSODEG00000003682) #26	ENSODEG00000003625 #27	KCNV2 (ENSODEG00000003536) #28	ENSODEG00000003492 #29	ENSODEG00000006378	SMARCA2 (ENSODEG00000005452) #30	DMRT2 (ENSODEG00000004992) #32	DMRT3 (ENSODEG00000004984) #33	DMRT1 (ENSODEG00000004898)	KANK1 (ENSODEG00000004766) #35	ENSODEG00000004719	ENSODEG00000004711 #37
Long-tailed chinchilla	MODERN SPECIES	141	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716)	KIAA2026 (ENSCLAG00000010624)	MLANA (ENSCLAG00000005918)	ERMP1 (ENSCLAG00000004784) #7	RIC1 (ENSCLAG00000008085) #8	ENSCLAG00000007197	CD274 (ENSCLAG00000006370) #12	PLGRKT (ENSCLAG00000008570) #11	INSL6 (ENSCLAG00000007423) #17	JAK2 (ENSCLAG00000005091) #18	RCL1 (ENSCLAG00000007445) #19	AK3 (ENSCLAG00000006329) #20	CDC37L1 (ENSCLAG00000005805) #21	PLPP6 (ENSCLAG00000017735) #23	SPATA6L (ENSCLAG00000010497) #22	ENSCLAG00000009476	SLC1A1 (ENSCLAG00000009832) #24	ENSCLAG00000009238	GLIS3 (ENSCLAG00000008116) #25	RFX3 (ENSCLAG00000009044) #26	PUM3 (ENSCLAG00000011892) #27	KCNV2 (ENSCLAG00000013226) #28	VLDLR (ENSCLAG00000007543) #29	SMARCA2 (ENSCLAG00000014484) #30	DMRT2 (ENSCLAG00000006168) #32	DMRT3 (ENSCLAG00000015537) #33	DMRT1 (ENSCLAG00000015238)	KANK1 (ENSCLAG00000015509) #35	DOCK8 (ENSCLAG00000005204) #37	ENSCLAG00000005076
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Marmotini	ANCESTRAL SPECIES	1	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839.k #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.a #15	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Marmotini_b	ANCESTRAL SPECIES	88										ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489.n	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Squirrel	MODERN SPECIES	103											ENSSTOG00000016298 #17	JAK2 (ENSSTOG00000006679) #18	RCL1 (ENSSTOG00000000023) #19	AK3 (ENSSTOG00000000021) #20	CDC37L1 (ENSSTOG00000000020) #21	SPATA6L (ENSSTOG00000000018) #22	PLPP6 (ENSSTOG00000025831) #23	SLC1A1 (ENSSTOG00000023583) #24	ENSSTOG00000031708	GLIS3 (ENSSTOG00000000302) #25	RFX3 (ENSSTOG00000006974) #26	PUM3 (ENSSTOG00000009586) #27	KCNV2 (ENSSTOG00000020003) #28	VLDLR (ENSSTOG00000006880) #29	ENSSTOG00000031987	SMARCA2 (ENSSTOG00000006812) #30	DMRT2 (ENSSTOG00000026909) #32	DMRT3 (ENSSTOG00000023574) #33	DMRT1 (ENSSTOG00000010235)	KANK1 (ENSSTOG00000010218) #35	ENSSTOG00000030036
Arctic ground squirrel	MODERN SPECIES	615													RCL1 (ENSUPAG00010002682) #19	ENSUPAG00010002695	AK3 (ENSUPAG00010002720) #20	SPATA6L (ENSUPAG00010002744) #22	PLPP6 (ENSUPAG00010002808) #23	ENSUPAG00010002812	SLC1A1 (ENSUPAG00010002817) #24	ENSUPAG00010002843	ENSUPAG00010002859	ENSUPAG00010002867
Alpin marmot	MODERN SPECIES	32	ENSMMMG00000002003 #7	ENSMMMG00000002013 #7	RIC1 (ENSMMMG00000002031) #8	PDCD1LG2 (ENSMMMG00000002085) #10	CD274 (ENSMMMG00000002100) #12	PLGRKT (ENSMMMG00000002117) #11	ENSMMMG00000002130 #15	ENSMMMG00000002146	ENSMMMG00000002157	ENSMMMG00000002165 #17	JAK2 (ENSMMMG00000002174) #18	RCL1 (ENSMMMG00000002259) #19	AK3 (ENSMMMG00000002286) #20	CDC37L1 (ENSMMMG00000002322) #21	PLPP6 (ENSMMMG00000002356) #23	SPATA6L (ENSMMMG00000002361) #22	SLC1A1 (ENSMMMG00000002380) #24	ENSMMMG00000002405	ENSMMMG00000002416	GLIS3 (ENSMMMG00000002430) #25	ENSMMMG00000002504	PUM3 (ENSMMMG00000002513) #27	KCNV2 (ENSMMMG00000002550) #28	ENSMMMG00000002572	VLDLR (ENSMMMG00000002594) #29	ENSMMMG00000002765	ENSMMMG00000002785	SMARCA2 (ENSMMMG00000002811) #30	ENSMMMG00000003212	DMRT2 (ENSMMMG00000003238) #32	DMRT3 (ENSMMMG00000003239) #33
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005025173	KIAA2026 (ENSSVLG00005025155)	MLANA (ENSSVLG00005025137)	ERMP1 (ENSSVLG00005025117) #7	RIC1 (ENSSVLG00005025040) #8	PDCD1LG2 (ENSSVLG00005024955) #10	CD274 (ENSSVLG00005024930) #12	PLGRKT (ENSSVLG00005024908) #11	ENSSVLG00005024871	INSL6 (ENSSVLG00005024849) #17	JAK2 (ENSSVLG00005024808) #18	RCL1 (ENSSVLG00005024752) #19	ENSSVLG00005024721 #20	CDC37L1 (ENSSVLG00005024699) #21	PLPP6 (ENSSVLG00005024689) #23	SPATA6L (ENSSVLG00005024615) #22	SLC1A1 (ENSSVLG00005024569) #24	GLIS3 (ENSSVLG00005024543) #25	RFX3 (ENSSVLG00005024420) #26	ENSSVLG00005024401	PUM3 (ENSSVLG00005024338) #27	KCNV2 (ENSSVLG00005024318) #28	VLDLR (ENSSVLG00005024232) #29	ENSSVLG00005024201	SMARCA2 (ENSSVLG00005024009) #30	DMRT2 (ENSSVLG00005023918) #32	DMRT3 (ENSSVLG00005023888) #33	DMRT1 (ENSSVLG00005023845)	KANK1 (ENSSVLG00005023807) #35	DOCK8 (ENSSVLG00005023344) #37	ENSSVLG00005023280
Lagomorpha	ANCESTRAL SPECIES	68	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000183016.E.b.b	ENSGT01050000244818	ENSGT00940000153064.b.d	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26
Rabbit	MODERN SPECIES		CD274 (ENSOCUG00000008117) #12	PLGRKT (ENSOCUG00000008095) #11	ENSOCUG00000025640 #15	ENSOCUG00000030357	ENSOCUG00000038359	ENSOCUG00000030169	ENSOCUG00000037426	ENSOCUG00000031086	INSL6 (ENSOCUG00000013682) #17	ENSOCUG00000037721	JAK2 (ENSOCUG00000016853) #18	RCL1 (ENSOCUG00000008161) #19	ENSOCUG00000013279	ENSOCUG00000011411 #20	CDC37L1 (ENSOCUG00000003468) #21	SPATA6L (ENSOCUG00000003455) #22	PLPP6 (ENSOCUG00000003465) #23	ENSOCUG00000022202 #24	ENSOCUG00000026987	ENSOCUG00000013264 #24	ENSOCUG00000036407	GLIS3 (ENSOCUG00000023004) #25	ENSOCUG00000027590	ENSOCUG00000023393	RFX3 (ENSOCUG00000014086) #26	ENSOCUG00000039572	ENSOCUG00000004189 #27	KCNV2 (ENSOCUG00000004385) #28	VLDLR (ENSOCUG00000002231) #29	ENSOCUG00000022775	SMARCA2 (ENSOCUG00000006320) #30
Pika	MODERN SPECIES	4916												RCL1 (ENSOPRG00000010965) #19	AK3 (ENSOPRG00000010954) #20	CDC37L1 (ENSOPRG00000010942) #21	ENSOPRG00000010928	SPATA6L (ENSOPRG00000010908) #22	SLC1A1 (ENSOPRG00000010884) #24
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Suina	ANCESTRAL SPECIES	23	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00520000061590	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Pig	MODERN SPECIES		MLANA (ENSSSCG00000005206)	ERMP1 (ENSSSCG00000005207) #7	RIC1 (ENSSSCG00000005208) #8	ENSSSCG00000005209	PDCD1LG2 (ENSSSCG00000032561) #10	CD274 (ENSSSCG00000005211) #12	PLGRKT (ENSSSCG00000005212) #11	ENSSSCG00000005216 #16	INSL6 (ENSSSCG00000005214) #17	JAK2 (ENSSSCG00000005215) #18	ENSSSCG00000052472	ENSSSCG00000005217 #19	ENSSSCG00000058562 #19	AK3 (ENSSSCG00000023595) #20	CDC37L1 (ENSSSCG00000005219) #21	SPATA6L (ENSSSCG00000005221) #22	PLPP6 (ENSSSCG00000005220) #23	SLC1A1 (ENSSSCG00000005222) #24	GLIS3 (ENSSSCG00000005224) #25	RFX3 (ENSSSCG00000005225) #26	ENSSSCG00000039823	PUM3 (ENSSSCG00000005227) #27	KCNV2 (ENSSSCG00000005228) #28	VLDLR (ENSSSCG00000005229) #29	ENSSSCG00000040670	ENSSSCG00000052990	ENSSSCG00000041522	ENSSSCG00000005232 #30	ENSSSCG00000057314 #30	ENSSSCG00000032324	ENSSSCG00000044946
Chacoan peccary	MODERN SPECIES	20	ERMP1 (ENSCWAG00000021102) #7	RIC1 (ENSCWAG00000021078) #8	ENSCWAG00000021040	PDCD1LG2 (ENSCWAG00000021026) #10	CD274 (ENSCWAG00000021014) #12	PLGRKT (ENSCWAG00000021002) #11	ENSCWAG00000020963 #16	INSL6 (ENSCWAG00000020954) #17	JAK2 (ENSCWAG00000020930) #18	ENSCWAG00000020920	ENSCWAG00000020913	RCL1 (ENSCWAG00000020883) #19	AK3 (ENSCWAG00000020856) #20	CDC37L1 (ENSCWAG00000020832) #21	PLPP6 (ENSCWAG00000020823) #23	SPATA6L (ENSCWAG00000020801) #22	SLC1A1 (ENSCWAG00000020776) #24	GLIS3 (ENSCWAG00000020767) #25	ENSCWAG00000020759	RFX3 (ENSCWAG00000020726) #26	PUM3 (ENSCWAG00000020700) #27	KCNV2 (ENSCWAG00000020693) #28	ENSCWAG00000020684	VLDLR (ENSCWAG00000020653) #29	SMARCA2 (ENSCWAG00000020512) #30	ENSCWAG00000020471	DMRT2 (ENSCWAG00000020422) #32	DMRT3 (ENSCWAG00000020400) #33	DMRT1 (ENSCWAG00000020382)	KANK1 (ENSCWAG00000020332) #35	DOCK8 (ENSCWAG00000019884) #37
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Camelidae	ANCESTRAL SPECIES	5	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a.e #16	ENSGT00940000154434.a.f #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000169111	ENSGT00640000091523
Arabian camel	MODERN SPECIES	30	KIAA2026 (ENSCDRG00005005203)	MLANA (ENSCDRG00005005180)	ERMP1 (ENSCDRG00005005148) #7	RIC1 (ENSCDRG00005004883) #8	PDCD1LG2 (ENSCDRG00005004849) #10	CD274 (ENSCDRG00005004734) #12	ENSCDRG00005004708 #16	PLGRKT (ENSCDRG00005004613) #11	ENSCDRG00005004570 #16	INSL6 (ENSCDRG00005004548) #17	JAK2 (ENSCDRG00005004520) #18	RCL1 (ENSCDRG00005004458) #19	AK3 (ENSCDRG00005004398) #20	CDC37L1 (ENSCDRG00005004358) #21	PLPP6 (ENSCDRG00005004350) #23	SPATA6L (ENSCDRG00005004284) #22	SLC1A1 (ENSCDRG00005004192) #24	GLIS3 (ENSCDRG00005004109) #25	RFX3 (ENSCDRG00005004007) #26	ENSCDRG00005003916	PUM3 (ENSCDRG00005003846) #27	KCNV2 (ENSCDRG00005003822) #28	VLDLR (ENSCDRG00005003699) #29	ENSCDRG00005003352 #30	DMRT2 (ENSCDRG00005003248) #32	DMRT3 (ENSCDRG00005003237) #33	DMRT1 (ENSCDRG00005003226)	KANK1 (ENSCDRG00005003188) #35	DOCK8 (ENSCDRG00005003115) #37	ENSCDRG00005003094	ENSCDRG00005002760
Alpaca	MODERN SPECIES	3435											INSL6 (ENSVPAG00000009194) #17	JAK2 (ENSVPAG00000009189) #18	RCL1 (ENSVPAG00000009188) #19	AK3 (ENSVPAG00000009187) #20	CDC37L1 (ENSVPAG00000009186) #21	SPATA6L (ENSVPAG00000009184) #22	SLC1A1 (ENSVPAG00000009183) #24
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Pecora	ANCESTRAL SPECIES	30	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Yarkand deer	MODERN SPECIES	21	ENSCHYG00000026163	IL33 (ENSCHYG00000026175)	ENSCHYG00000026199	KIAA2026 (ENSCHYG00000026213)	MLANA (ENSCHYG00000026247)	ERMP1 (ENSCHYG00000026281) #7	RIC1 (ENSCHYG00000026365) #8	PDCD1LG2 (ENSCHYG00000026474) #10	CD274 (ENSCHYG00000026492) #12	PLGRKT (ENSCHYG00000026504) #11	INSL6 (ENSCHYG00000026514) #17	JAK2 (ENSCHYG00000026521) #18	RCL1 (ENSCHYG00000026548) #19	AK3 (ENSCHYG00000026564) #20	CDC37L1 (ENSCHYG00000026576) #21	SPATA6L (ENSCHYG00000026599) #22	PLPP6 (ENSCHYG00000026621) #23	SLC1A1 (ENSCHYG00000026638) #24	GLIS3 (ENSCHYG00000026667) #25	RFX3 (ENSCHYG00000026695) #26	PUM3 (ENSCHYG00000026723) #27	KCNV2 (ENSCHYG00000026745) #28	VLDLR (ENSCHYG00000026763) #29	ENSCHYG00000026782	SMARCA2 (ENSCHYG00000026820) #30	DMRT2 (ENSCHYG00000026873) #32	DMRT3 (ENSCHYG00000026880) #33	DMRT1 (ENSCHYG00000014189)	ENSCHYG00000014288	KANK1 (ENSCHYG00000014368) #35	DOCK8 (ENSCHYG00000014734) #37
Percora_a	ANCESTRAL SPECIES	24	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Bovidae	ANCESTRAL SPECIES	14	ENSGT00940000162767	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Bovinae	ANCESTRAL SPECIES	14	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Bos	ANCESTRAL SPECIES	10	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005019895	MLANA (ENSBIXG00005006149)	ENSBIXG00005003243	ENSBIXG00005019813	ERMP1 (ENSBIXG00005000033) #7	RIC1 (ENSBIXG00005019710) #8	ENSBIXG00005019603	PDCD1LG2 (ENSBIXG00005019595) #10	CD274 (ENSBIXG00005003188) #12	PLGRKT (ENSBIXG00005006397) #11	INSL6 (ENSBIXG00005003183) #17	JAK2 (ENSBIXG00005003171) #18	RCL1 (ENSBIXG00005019414) #19	AK3 (ENSBIXG00005019326) #20	CDC37L1 (ENSBIXG00005019277) #21	SPATA6L (ENSBIXG00005019220) #22	ENSBIXG00005019159	PLPP6 (ENSBIXG00005019138) #23	SLC1A1 (ENSBIXG00005019133) #24	ENSBIXG00005019106	GLIS3 (ENSBIXG00005002642) #25	RFX3 (ENSBIXG00005003091) #26	ENSBIXG00005018899	PUM3 (ENSBIXG00005018805) #27	KCNV2 (ENSBIXG00005018778) #28	VLDLR (ENSBIXG00005003037) #29	ENSBIXG00005005990	SMARCA2 (ENSBIXG00005018551) #30	DMRT2 (ENSBIXG00005018266) #32	DMRT3 (ENSBIXG00005018199) #33	DMRT1 (ENSBIXG00005018189)
Bos_a	ANCESTRAL SPECIES	30	ENSGT00940000167431	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00910000144347.a.a	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523	ENSGT00940000163353
Domestic yak	MODERN SPECIES	26	MLANA (ENSBGRG00000006530)	ERMP1 (ENSBGRG00000006502) #7	ENSBGRG00000006488	RIC1 (ENSBGRG00000006377) #8	PDCD1LG2 (ENSBGRG00000006267) #10	CD274 (ENSBGRG00000006097) #12	PLGRKT (ENSBGRG00000006032) #11	INSL6 (ENSBGRG00000006012) #17	JAK2 (ENSBGRG00000005982) #18	ENSBGRG00000005967	RCL1 (ENSBGRG00000005812) #19	AK3 (ENSBGRG00000005727) #20	CDC37L1 (ENSBGRG00000005637) #21	ENSBGRG00000005568	PLPP6 (ENSBGRG00000005557) #23	SPATA6L (ENSBGRG00000005420) #22	SLC1A1 (ENSBGRG00000005214) #24	GLIS3 (ENSBGRG00000005123) #25	ENSBGRG00000005096	ENSBGRG00000005081	RFX3 (ENSBGRG00000004985) #26	ENSBGRG00000004951	PUM3 (ENSBGRG00000004833) #27	KCNV2 (ENSBGRG00000004767) #28	VLDLR (ENSBGRG00000004545) #29	SMARCA2 (ENSBGRG00000004107) #30	DMRT2 (ENSBGRG00000003984) #32	DMRT3 (ENSBGRG00000003946) #33	DMRT1 (ENSBGRG00000003868)	KANK1 (ENSBGRG00000003717) #35	ENSBGRG00000003655
Wild yak	MODERN SPECIES	400			ENSBMUG00000004833	KIAA2026 (ENSBMUG00000004847)	MLANA (ENSBMUG00000004855)	ERMP1 (ENSBMUG00000004882) #7	RIC1 (ENSBMUG00000005025) #8	PDCD1LG2 (ENSBMUG00000005066) #10	CD274 (ENSBMUG00000005088) #12	PLGRKT (ENSBMUG00000005103) #11	INSL6 (ENSBMUG00000005110) #17	JAK2 (ENSBMUG00000005141) #18	RCL1 (ENSBMUG00000005171) #19	AK3 (ENSBMUG00000005196) #20	CDC37L1 (ENSBMUG00000005208) #21	SPATA6L (ENSBMUG00000005249) #22	ENSBMUG00000005270	PLPP6 (ENSBMUG00000005280) #23	SLC1A1 (ENSBMUG00000005311) #24
American bison	MODERN SPECIES	3328							CD274 (ENSBBBG00000015809) #12	PLGRKT (ENSBBBG00000015820) #11	INSL6 (ENSBBBG00000015826) #17	JAK2 (ENSBBBG00000015845) #18	RCL1 (ENSBBBG00000015884) #19	AK3 (ENSBBBG00000003960) #20	CDC37L1 (ENSBBBG00000002586) #21	ENSBBBG00000003969	PLPP6 (ENSBBBG00000015953) #23	SPATA6L (ENSBBBG00000015978) #22	SLC1A1 (ENSBBBG00000015989) #24	GLIS3 (ENSBBBG00000016019) #25	RFX3 (ENSBBBG00000003993) #26	PUM3 (ENSBBBG00000007035) #27	KCNV2 (ENSBBBG00000016123) #28	ENSBBBG00000007174	VLDLR (ENSBBBG00000008333) #29	ENSBBBG00000016209	SMARCA2 (ENSBBBG00000004105) #30	DMRT2 (ENSBBBG00000016627) #32	DMRT3 (ENSBBBG00000016636) #33	DMRT1 (ENSBBBG00000016649)	KANK1 (ENSBBBG00000007906) #35	ENSBBBG00000000733	DOCK8 (ENSBBBG00000017006) #37
Caprinae	ANCESTRAL SPECIES	14	ENSGT00940000163110	ENSGT00390000005185	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00660000097148	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Goat	MODERN SPECIES	27	IL33 (ENSCHIG00000020304)	RANBP6 (ENSCHIG00000006704)	KIAA2026 (ENSCHIG00000024183)	MLANA (ENSCHIG00000014493)	ERMP1 (ENSCHIG00000026817) #7	RIC1 (ENSCHIG00000021856) #8	PDCD1LG2 (ENSCHIG00000024438) #10	CD274 (ENSCHIG00000017335) #12	PLGRKT (ENSCHIG00000017669) #11	JAK2 (ENSCHIG00000003903) #18	INSL6 (ENSCHIG00000020505) #17	RCL1 (ENSCHIG00000012407) #19	AK3 (ENSCHIG00000024602) #20	CDC37L1 (ENSCHIG00000025238) #21	ENSCHIG00000010369	SPATA6L (ENSCHIG00000020946) #22	PLPP6 (ENSCHIG00000001745) #23	SLC1A1 (ENSCHIG00000018337) #24	ENSCHIG00000007959	ENSCHIG00000019534 #25	RFX3 (ENSCHIG00000011556) #26	PUM3 (ENSCHIG00000021559) #27	KCNV2 (ENSCHIG00000011625) #28	VLDLR (ENSCHIG00000021572) #29	ENSCHIG00000012185	SMARCA2 (ENSCHIG00000025863) #30	DMRT2 (ENSCHIG00000020138) #32	DMRT3 (ENSCHIG00000013041) #33	DMRT1 (ENSCHIG00000024212)	KANK1 (ENSCHIG00000018134) #35	DOCK8 (ENSCHIG00000014695) #37
Siberian musk deer	MODERN SPECIES	111									PLGRKT (ENSMMSG00000001829) #11	INSL6 (ENSMMSG00000001838) #17	JAK2 (ENSMMSG00000001846) #18	ENSMMSG00000001874	RCL1 (ENSMMSG00000001886) #19	AK3 (ENSMMSG00000001923) #20	CDC37L1 (ENSMMSG00000001936) #21	SPATA6L (ENSMMSG00000001959) #22	PLPP6 (ENSMMSG00000002003) #23	SLC1A1 (ENSMMSG00000002015) #24	GLIS3 (ENSMMSG00000002042) #25	RFX3 (ENSMMSG00000002070) #26	ENSMMSG00000002091	PUM3 (ENSMMSG00000002099) #27	KCNV2 (ENSMMSG00000002132) #28	VLDLR (ENSMMSG00000002160) #29	ENSMMSG00000002256
Cetacea	ANCESTRAL SPECIES	9	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	50	RANBP6 (ENSDLEG00000019757)	KIAA2026 (ENSDLEG00000019748)	MLANA (ENSDLEG00000019742)	ERMP1 (ENSDLEG00000019731) #7	RIC1 (ENSDLEG00000019725) #8	PDCD1LG2 (ENSDLEG00000019719) #10	CD274 (ENSDLEG00000019715) #12	PLGRKT (ENSDLEG00000019711) #11	RLN1 (ENSDLEG00000019703) #16	ENSDLEG00000019692 #17	JAK2 (ENSDLEG00000019680) #18	RCL1 (ENSDLEG00000019668) #19	AK3 (ENSDLEG00000019654) #20	CDC37L1 (ENSDLEG00000019644) #21	PLPP6 (ENSDLEG00000019637) #23	ENSDLEG00000019609 #22	ENSDLEG00000019547 #22	SLC1A1 (ENSDLEG00000019531) #24	ENSDLEG00000019522	ENSDLEG00000019514 #25	RFX3 (ENSDLEG00000019460) #26	PUM3 (ENSDLEG00000019389) #27	KCNV2 (ENSDLEG00000019382) #28	VLDLR (ENSDLEG00000019340) #29	SMARCA2 (ENSDLEG00000019318) #30	ENSDLEG00000019309	ENSDLEG00000019303	DMRT2 (ENSDLEG00000019289) #32	ENSDLEG00000019284 ##32	DMRT3 (ENSDLEG00000019280) #33	DMRT1 (ENSDLEG00000019261)
Beluga whale	MODERN SPECIES	50	KIAA2026 (ENSDLEG00000019748)	MLANA (ENSDLEG00000019742)	ERMP1 (ENSDLEG00000019731) #7	RIC1 (ENSDLEG00000019725) #8	PDCD1LG2 (ENSDLEG00000019719) #10	CD274 (ENSDLEG00000019715) #12	PLGRKT (ENSDLEG00000019711) #11	RLN1 (ENSDLEG00000019703) #16	ENSDLEG00000019692 #17	JAK2 (ENSDLEG00000019680) #18	RCL1 (ENSDLEG00000019668) #19	AK3 (ENSDLEG00000019654) #20	CDC37L1 (ENSDLEG00000019644) #21	PLPP6 (ENSDLEG00000019637) #23	ENSDLEG00000019609 #22	ENSDLEG00000019547 #22	SLC1A1 (ENSDLEG00000019531) #24	ENSDLEG00000019522	ENSDLEG00000019514 #25	RFX3 (ENSDLEG00000019460) #26	PUM3 (ENSDLEG00000019389) #27	KCNV2 (ENSDLEG00000019382) #28	VLDLR (ENSDLEG00000019340) #29	SMARCA2 (ENSDLEG00000019318) #30	ENSDLEG00000019309	ENSDLEG00000019303	DMRT2 (ENSDLEG00000019289) #32	ENSDLEG00000019284 ##32	DMRT3 (ENSDLEG00000019280) #33	DMRT1 (ENSDLEG00000019261)	KANK1 (ENSDLEG00000019090) #35
Narwhal	MODERN SPECIES	312	IL33 (ENSMMNG00015020337)	ENSMMNG00015020366	KIAA2026 (ENSMMNG00015020402)	MLANA (ENSMMNG00015020456)	ERMP1 (ENSMMNG00015020481) #7	RIC1 (ENSMMNG00015020565) #8	PDCD1LG2 (ENSMMNG00015020694) #10	CD274 (ENSMMNG00015020739) #12	PLGRKT (ENSMMNG00015020757) #11	ENSMMNG00015020775 #16	ENSMMNG00015020785 #17	JAK2 (ENSMMNG00015020808) #18	RCL1 (ENSMMNG00015020841) #19	AK3 (ENSMMNG00015020890) #20	CDC37L1 (ENSMMNG00015020918) #21	SPATA6L (ENSMMNG00015020944) #22	PLPP6 (ENSMMNG00015020983) #23	SLC1A1 (ENSMMNG00015020990) #24	GLIS3 (ENSMMNG00015021011) #25	RFX3 (ENSMMNG00015021042) #26	ENSMMNG00015021179	PUM3 (ENSMMNG00015021202) #27	KCNV2 (ENSMMNG00015021226) #28	VLDLR (ENSMMNG00015021252) #29	SMARCA2 (ENSMMNG00015021345) #30	ENSMMNG00015021422	ENSMMNG00015021427	DMRT2 (ENSMMNG00015013077) #32	DMRT3 (ENSMMNG00015013099) #33	DMRT1 (ENSMMNG00015013112)	KANK1 (ENSMMNG00015013138) #35
Vaquita	MODERN SPECIES	17	TPD52L3 (ENSPSNG00000021045)	IL33 (ENSPSNG00000021022)	RANBP6 (ENSPSNG00000020980)	KIAA2026 (ENSPSNG00000020897)	MLANA (ENSPSNG00000020843)	ERMP1 (ENSPSNG00000020793) #7	RIC1 (ENSPSNG00000020684) #8	ENSPSNG00000020589 #10	PLGRKT (ENSPSNG00000020541) #11	ENSPSNG00000020509 #16	JAK2 (ENSPSNG00000020398) #18	RCL1 (ENSPSNG00000020330) #19	AK3 (ENSPSNG00000020263) #20	CDC37L1 (ENSPSNG00000020228) #21	PLPP6 (ENSPSNG00000020203) #23	SPATA6L (ENSPSNG00000020084) #22	SLC1A1 (ENSPSNG00000019992) #24	GLIS3 (ENSPSNG00000019903) #25	RFX3 (ENSPSNG00000019643) #26	PUM3 (ENSPSNG00000019496) #27	KCNV2 (ENSPSNG00000019443) #28	VLDLR (ENSPSNG00000019297) #29	SMARCA2 (ENSPSNG00000018802) #30	ENSPSNG00000018632	ENSPSNG00000018606	DMRT2 (ENSPSNG00000018429) #32	DMRT3 (ENSPSNG00000018387) #33	DMRT1 (ENSPSNG00000018301)	KANK1 (ENSPSNG00000018178) #35	DOCK8 (ENSPSNG00000016745) #37	ENSPSNG00000016463
Dolphin	MODERN SPECIES	3311												RCL1 (ENSTTRG00000016525) #19	AK3 (ENSTTRG00000016524) #20	CDC37L1 (ENSTTRG00000016523) #21	PLPP6 (ENSTTRG00000016522) #23	SPATA6L (ENSTTRG00000016521) #22
Sperm whale	MODERN SPECIES	20	RANBP6 (ENSPCTG00005006329)	KIAA2026 (ENSPCTG00005006243)	MLANA (ENSPCTG00005006205)	ERMP1 (ENSPCTG00005006142) #7	RIC1 (ENSPCTG00005006024) #8	PDCD1LG2 (ENSPCTG00005005956) #10	CD274 (ENSPCTG00005005931) #12	PLGRKT (ENSPCTG00005005902) #11	ENSPCTG00005005885 #16	INSL6 (ENSPCTG00005005856) #17	JAK2 (ENSPCTG00005005720) #18	RCL1 (ENSPCTG00005005644) #19	AK3 (ENSPCTG00005005584) #20	CDC37L1 (ENSPCTG00005005531) #21	PLPP6 (ENSPCTG00005005512) #23	SPATA6L (ENSPCTG00005005489) #22	SLC1A1 (ENSPCTG00005005440) #24	GLIS3 (ENSPCTG00005005407) #25	RFX3 (ENSPCTG00005005359) #26	ENSPCTG00005005299	PUM3 (ENSPCTG00005005228) #27	KCNV2 (ENSPCTG00005005193) #28	VLDLR (ENSPCTG00005004995) #29	ENSPCTG00005004736 #30	ENSPCTG00005004691	ENSPCTG00005004671	DMRT2 (ENSPCTG00005004572) #32	DMRT3 (ENSPCTG00005004535) #33	DMRT1 (ENSPCTG00005004498)	KANK1 (ENSPCTG00005004438) #35	DOCK8 (ENSPCTG00005004178) #37
Blue whale	MODERN SPECIES	17	ENSBMSG00010003773	ENSBMSG00010003784	KIAA2026 (ENSBMSG00010003802)	MLANA (ENSBMSG00010003817)	ERMP1 (ENSBMSG00010003832) #7	RIC1 (ENSBMSG00010003869) #8	PDCD1LG2 (ENSBMSG00010003898) #10	CD274 (ENSBMSG00010003928) #12	PLGRKT (ENSBMSG00010003942) #11	ENSBMSG00010003948 #16	INSL6 (ENSBMSG00010003955) #17	JAK2 (ENSBMSG00010003969) #18	RCL1 (ENSBMSG00010003993) #19	AK3 (ENSBMSG00010004013) #20	CDC37L1 (ENSBMSG00010004036) #21	SPATA6L (ENSBMSG00010004050) #22	PLPP6 (ENSBMSG00010004080) #23	SLC1A1 (ENSBMSG00010004095) #24	GLIS3 (ENSBMSG00010004124) #25	RFX3 (ENSBMSG00010004165) #26	PUM3 (ENSBMSG00010004204) #27	KCNV2 (ENSBMSG00010004219) #28	VLDLR (ENSBMSG00010004233) #29	SMARCA2 (ENSBMSG00010004262) #30	DMRT2 (ENSBMSG00010004396) #32	DMRT3 (ENSBMSG00010004420) #33	DMRT1 (ENSBMSG00010004442)	KANK1 (ENSBMSG00010000089) #35	ENSBMSG00010000100	DOCK8 (ENSBMSG00010000177) #37	ENSBMSG00010000431
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Carnivora	ANCESTRAL SPECIES	25	ENSGT00940000153947.A	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Caniformia	ANCESTRAL SPECIES	29	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Ursidae	ANCESTRAL SPECIES	43	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Ursus	ANCESTRAL SPECIES	50	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839.h #7	ENSGT00530000063839.g #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120.hb.a #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000166172	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Polar bear	MODERN SPECIES	171	ENSUMAG00000016671	ENSUMAG00000016672	ENSUMAG00000016675	ENSUMAG00000016678	ENSUMAG00000016687 #7	ENSUMAG00000016690 #7	RIC1 (ENSUMAG00000016695) #8	PDCD1LG2 (ENSUMAG00000016707) #10	CD274 (ENSUMAG00000016708) #12	ENSUMAG00000016719 #11	INSL6 (ENSUMAG00000016724) #17	JAK2 (ENSUMAG00000016820) #18	RCL1 (ENSUMAG00000017890) #19	ENSUMAG00000017904 #20	CDC37L1 (ENSUMAG00000017926) #21	SPATA6L (ENSUMAG00000017942) #22	ENSUMAG00000017954 #23	SLC1A1 (ENSUMAG00000017970) #24	GLIS3 (ENSUMAG00000018031) #25	RFX3 (ENSUMAG00000018101) #26	ENSUMAG00000018118	ENSUMAG00000018187	PUM3 (ENSUMAG00000018443) #27	KCNV2 (ENSUMAG00000018690) #28	VLDLR (ENSUMAG00000018747) #29	ENSUMAG00000019303 #30	ENSUMAG00000019328 #30	DMRT2 (ENSUMAG00000019339) #32	ENSUMAG00000019350	KANK1 (ENSUMAG00000019362) #35	DOCK8 (ENSUMAG00000019524) #37
American black bear	MODERN SPECIES	4544													ENSUAMG00000008999 #20	CDC37L1 (ENSUAMG00000009007) #21	PLPP6 (ENSUAMG00000009008) #23	SPATA6L (ENSUAMG00000009016) #22	SLC1A1 (ENSUAMG00000009116) #24
Giant Panda	MODERN SPECIES	8	ENSAMEG00000026961	ENSAMEG00000017286	ENSAMEG00000031178	ENSAMEG00000009909	ENSAMEG00000009883 #7	RIC1 (ENSAMEG00000009846) #8	PDCD1LG2 (ENSAMEG00000009830) #10	PLGRKT (ENSAMEG00000009795) #11	CD274 (ENSAMEG00000009800) #12	ENSAMEG00000009780 #16	INSL6 (ENSAMEG00000009778) #17	JAK2 (ENSAMEG00000009661) #18	RCL1 (ENSAMEG00000002631) #19	AK3 (ENSAMEG00000002640) #20	CDC37L1 (ENSAMEG00000002657) #21	ENSAMEG00000002674 #22	SLC1A1 (ENSAMEG00000002682) #24	GLIS3 (ENSAMEG00000002733) #25	RFX3 (ENSAMEG00000012132) #26	ENSAMEG00000012183	PUM3 (ENSAMEG00000012187) #27	KCNV2 (ENSAMEG00000012228) #28	VLDLR (ENSAMEG00000012233) #29	ENSAMEG00000027822	SMARCA2 (ENSAMEG00000012325) #30	ENSAMEG00000019747	DMRT2 (ENSAMEG00000006648) #32	DMRT3 (ENSAMEG00000006664) #33	KANK1 (ENSAMEG00000006667) #35	DOCK8 (ENSAMEG00000006698) #37	ENSAMEG00000006824
Mustelinae	ANCESTRAL SPECIES	87					ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000160907 #23	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00940000164995
American mink	MODERN SPECIES	365									PLGRKT (ENSNVIG00000021188) #11	ENSNVIG00000021190 #16	INSL6 (ENSNVIG00000021192) #17	JAK2 (ENSNVIG00000021199) #18	RCL1 (ENSNVIG00000021229) #19	AK3 (ENSNVIG00000021277) #20	CD37L (ENSNVIG00000021293) #21	SPATA6L (ENSNVIG00000021312) #22	PLPP6 (ENSNVIG00000021343) #23	SLC1A1 (ENSNVIG00000021350) #24	GLIS3 (ENSNVIG00000021365) #25
Ferret	MODERN SPECIES	281	ZNF484 (ENSMPUG00000004860)	ENSMPUG00000019578	MFSD14B (ENSMPUG00000004866)	ENSMPUG00000004873	ERMP1 (ENSMPUG00000004878) #7	ENSMPUG00000004889 #8	ENSMPUG00000004903 #8	PDCD1LG2 (ENSMPUG00000004909) #10	CD274 (ENSMPUG00000004954) #12	ENSMPUG00000004961 #16	INSL6 (ENSMPUG00000004968) #17	JAK2 (ENSMPUG00000004974) #18	RCL1 (ENSMPUG00000004998) #19	AK3 (ENSMPUG00000005006) #20	CDC37L1 (ENSMPUG00000005018) #21	SPATA6L (ENSMPUG00000005024) #22	SLC1A1 (ENSMPUG00000005081) #24	GLIS3 (ENSMPUG00000005095) #25	RFX3 (ENSMPUG00000005101) #26	ENSMPUG00000005120	PUM3 (ENSMPUG00000005125) #27	KCNV2 (ENSMPUG00000005137) #28	VLDLR (ENSMPUG00000005155) #29	ENSMPUG00000005169	SMARCA2 (ENSMPUG00000005171) #30	ENSMPUG00000005192	DMRT2 (ENSMPUG00000005199) #32	DMRT1 (ENSMPUG00000005204)	KANK1 (ENSMPUG00000005216) #35	DOCK8 (ENSMPUG00000005223) #37	ENSMPUG00000005707
Canidae	ANCESTRAL SPECIES	47	ENSGT00950000183043.a.b.b.a.a.a.b	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120.lb.b #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000154257.j.nb.a	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT01050000248397	ENSGT00530000063404.a #19	ENSGT00940000155120.lb.b #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Dog	MODERN SPECIES		ENSCAFG00845016712 #7	RIC1 (ENSCAFG00845016384) #8	PDCD1LG2 (ENSCAFG00845016232) #10	CD274 (ENSCAFG00845016107) #12	PLGRKT (ENSCAFG00845016070) #11	RLN2 (ENSCAFG00845016044) #16	INSL6 (ENSCAFG00845016024) #17	ENSCAFG00845016006	JAK2 (ENSCAFG00845015887) #18	ENSCAFG00845015836	JAK2 (ENSCAFG00845015728) #19	ENSCAFG00845015667	ENSCAFG00845015626 #20	CDC37L1 (ENSCAFG00845015553) #21	PLPP6 (ENSCAFG00845002916) #23	SPATA6L (ENSCAFG00845002856) #22	SLC1A1 (ENSCAFG00845002818) #24	GLIS3 (ENSCAFG00845002759) #25	ENSCAFG00845002739	RFX3 (ENSCAFG00845002562) #26	ENSCAFG00845002474	PUM3 (ENSCAFG00845002440) #27	KCNV2 (ENSCAFG00845002424) #28	VLDLR (ENSCAFG00845002345) #29	SMARCA2 (ENSCAFG00845002161) #30	ENSCAFG00845002045	DMRT2 (ENSCAFG00845002026) #32	DMRT3 (ENSCAFG00845002003) #33	DMRT1 (ENSCAFG00845001983)	KANK1 (ENSCAFG00845001908) #35	DOCK8 (ENSCAFG00845001647) #37
Dingo	MODERN SPECIES	125	ERMP1 (ENSCAFG00020005183) #7	RIC1 (ENSCAFG00020005108) #8	PDCD1LG2 (ENSCAFG00020005060) #10	CD274 (ENSCAFG00020005055) #12	PLGRKT (ENSCAFG00020005050) #11	ENSCAFG00020005012 #16	INSL6 (ENSCAFG00020005010) #17	JAK2 (ENSCAFG00020001020) #18	ENSCAFG00020000670	ENSCAFG00020000655	RCL1 (ENSCAFG00020000638) #19	ENSCAFG00020000622	ENSCAFG00020000594 #20	CDC37L1 (ENSCAFG00020000516) #21	PLPP6 (ENSCAFG00020000503) #23	SPATA6L (ENSCAFG00020000384) #22	SLC1A1 (ENSCAFG00020000361) #24	GLIS3 (ENSCAFG00020000104) #25	ENSCAFG00020026870	RFX3 (ENSCAFG00020026868) #26	PUM3 (ENSCAFG00020026867) #27	KCNV2 (ENSCAFG00020026866) #28	VLDLR (ENSCAFG00020026865) #29	ENSCAFG00020026863	ENSCAFG00020026802 #30	ENSCAFG00020026766 #30	ENSCAFG00020026759	DMRT2 (ENSCAFG00020026753) #32	DMRT3 (ENSCAFG00020026752) #33	DMRT1 (ENSCAFG00020026750)	KANK1 (ENSCAFG00020026742) #35
Red fox	MODERN SPECIES	37	ENSVVUG00000008064	ENSVVUG00000007496	ENSVVUG00000007464	ERMP1 (ENSVVUG00000007447) #7	RIC1 (ENSVVUG00000007409) #8	PDCD1LG2 (ENSVVUG00000007366) #10	PLGRKT (ENSVVUG00000007362) #11	ENSVVUG00000007360 #16	CD274 (ENSVVUG00000007347) #12	INSL6 (ENSVVUG00000007335) #17	JAK2 (ENSVVUG00000007315) #18	RCL1 (ENSVVUG00000007304) #19	AK3 (ENSVVUG00000007282) #20	CDC37L1 (ENSVVUG00000007275) #21	ENSVVUG00000007267 #23	SPATA6L (ENSVVUG00000007223) #22	SLC1A1 (ENSVVUG00000007200) #24	GLIS3 (ENSVVUG00000007122) #25	RFX3 (ENSVVUG00000006609) #26	ENSVVUG00000006545	PUM3 (ENSVVUG00000006527) #27	KCNV2 (ENSVVUG00000006518) #28	ENSVVUG00000006514	VLDLR (ENSVVUG00000004925) #29	ENSVVUG00000004598 #30	ENSVVUG00000004580 #30	DMRT2 (ENSVVUG00000004562) #32	DMRT3 (ENSVVUG00000004555) #33	DMRT1 (ENSVVUG00000004545)	KANK1 (ENSVVUG00000004494) #35	DOCK8 (ENSVVUG00000004407) #37
Felidae	ANCESTRAL SPECIES	28	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00950000183043.a.b.b.a.a.b.g.b	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Panthera	ANCESTRAL SPECIES	34	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00550000074872	ENSGT00950000183043.a.b.b.a.a.a.a.a.a	ENSGT00940000160228	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
lion	MODERN SPECIES	13	SPTLC1 (ENSPLOG00000011243)	ENSPLOG00000019547	ENSPLOG00000019445	ERMP1 (ENSPLOG00000019376) #7	RIC1 (ENSPLOG00000019269) #8	PDCD1LG2 (ENSPLOG00000019232) #10	CD274 (ENSPLOG00000019211) #12	PLGRKT (ENSPLOG00000019176) #11	ENSPLOG00000019152 #16	INSL6 (ENSPLOG00000019128) #17	JAK2 (ENSPLOG00000019062) #18	RCL1 (ENSPLOG00000019004) #19	AK3 (ENSPLOG00000018913) #20	CDC37L1 (ENSPLOG00000018840) #21	PLPP6 (ENSPLOG00000018812) #23	SPATA6L (ENSPLOG00000018652) #22	SLC1A1 (ENSPLOG00000018538) #24	GLIS3 (ENSPLOG00000018479) #25	RFX3 (ENSPLOG00000018336) #26	ENSPLOG00000018220	PUM3 (ENSPLOG00000018076) #27	KCNV2 (ENSPLOG00000018027) #28	VLDLR (ENSPLOG00000017962) #29	ENSPLOG00000017911	SMARCA2 (ENSPLOG00000017478) #30	DMRT2 (ENSPLOG00000017190) #32	DMRT3 (ENSPLOG00000017150) #33	DMRT1 (ENSPLOG00000017065)	KANK1 (ENSPLOG00000016894) #35	DOCK8 (ENSPLOG00000015754) #37	ENSPLOG00000014827
leopard	MODERN SPECIES	42	NFIL3 (ENSPPRG00000019620)	ROR2 (ENSPPRG00000023627)	SPTLC1 (ENSPPRG00000023598)	ENSPPRG00000023237	ERMP1 (ENSPPRG00000023169) #7	RIC1 (ENSPPRG00000022984) #8	PDCD1LG2 (ENSPPRG00000022891) #10	CD274 (ENSPPRG00000022858) #12	PLGRKT (ENSPPRG00000022792) #11	INSL6 (ENSPPRG00000022777) #17	JAK2 (ENSPPRG00000022744) #18	RCL1 (ENSPPRG00000022645) #19	AK3 (ENSPPRG00000000041) #20	CDC37L1 (ENSPPRG00000000059) #21	PLPP6 (ENSPPRG00000019670) #23	SPATA6L (ENSPPRG00000000218) #22	SLC1A1 (ENSPPRG00000000232) #24	GLIS3 (ENSPPRG00000000400) #25	RFX3 (ENSPPRG00000000606) #26	ENSPPRG00000000748	PUM3 (ENSPPRG00000000809) #27	KCNV2 (ENSPPRG00000000862) #28	VLDLR (ENSPPRG00000000915) #29	ENSPPRG00000001027	SMARCA2 (ENSPPRG00000001879) #30	DMRT2 (ENSPPRG00000002109) #32	DMRT3 (ENSPPRG00000002367) #33	DMRT1 (ENSPPRG00000002380)	KANK1 (ENSPPRG00000002516) #35	DOCK8 (ENSPPRG00000003143) #37	ENSPPRG00000005315
Tiger	MODERN SPECIES	463				ENSPTIG00000012403	ERMP1 (ENSPTIG00000005202) #7	RIC1 (ENSPTIG00000007073) #8	PDCD1LG2 (ENSPTIG00000013516) #10	CD274 (ENSPTIG00000014398) #12	PLGRKT (ENSPTIG00000015914) #11	ENSPTIG00000016439 #16	INSL6 (ENSPTIG00000016722) #17	JAK2 (ENSPTIG00000016939) #18	RCL1 (ENSPTIG00000019031) #19	AK3 (ENSPTIG00000000703) #20	CDC37L1 (ENSPTIG00000008469) #21	SPATA6L (ENSPTIG00000011794) #22	SLC1A1 (ENSPTIG00000013599) #24	ENSPTIG00000014983	GLIS3 (ENSPTIG00000015969) #25	RFX3 (ENSPTIG00000017617) #26	ENSPTIG00000021167	PUM3 (ENSPTIG00000021934) #27	VLDLR (ENSPTIG00000005593) #29	ENSPTIG00000009737	ENSPTIG00000010794 #30	ENSPTIG00000015817 #30
Cat	MODERN SPECIES	244	ENSFCAG00000021943	ENSFCAG00000046819	ENSFCAG00000021894	ENSFCAG00000047453	ERMP1 (ENSFCAG00000014912) #7	RIC1 (ENSFCAG00000014910) #8	PDCD1LG2 (ENSFCAG00000009048) #10	CD274 (ENSFCAG00000009047) #12	PLGRKT (ENSFCAG00000039638) #11	RLN (ENSFCAG00000011471) #16	INSL6 (ENSFCAG00000044599) #17	JAK2 (ENSFCAG00000028588) #18	RCL1 (ENSFCAG00000014557) #19	AK3 (ENSFCAG00000028063) #20	CDC37L1 (ENSFCAG00000027076) #21	SPATA6L (ENSFCAG00000002369) #22	PLPP6 (ENSFCAG00000038113) #23	SLC1A1 (ENSFCAG00000023590) #24	ENSFCAG00000037557	GLIS3 (ENSFCAG00000046401) #25	RFX3 (ENSFCAG00000012950) #26	ENSFCAG00000013260	KCNV2 (ENSFCAG00000004335) #28	VLDLR (ENSFCAG00000013257) #29	ENSFCAG00000041218	SMARCA2 (ENSFCAG00000001568) #30	DMRT2 (ENSFCAG00000006461) #32	DMRT3 (ENSFCAG00000036847) #33	DMRT1 (ENSFCAG00000006459)	KANK1 (ENSFCAG00000006458) #35	DOCK8 (ENSFCAG00000012046) #37
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523	ENSGT00940000163353
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523	ENSGT00940000163353
Greater horseshoe bat	MODERN SPECIES	3	KIAA2026 (ENSRFEG00010013980)	MLANA (ENSRFEG00010014270)	ERMP1 (ENSRFEG00010014298) #7	RIC1 (ENSRFEG00010014565) #8	PDCD1LG2 (ENSRFEG00010014656) #10	CD274 (ENSRFEG00010014726) #12	PLGRKT (ENSRFEG00010014761) #11	ENSRFEG00010014802	ENSRFEG00010014826 #16	ENSRFEG00010014899 #16	INSL6 (ENSRFEG00010014917) #17	JAK2 (ENSRFEG00010014972) #18	RCL1 (ENSRFEG00010015039) #19	AK3 (ENSRFEG00010015150) #20	CDC37L1 (ENSRFEG00010015324) #21	SPATA6L (ENSRFEG00010005120) #22	PLPP6 (ENSRFEG00010005138) #23	ENSRFEG00010005145	SLC1A1 (ENSRFEG00010005159) #24	GLIS3 (ENSRFEG00010005187) #25	RFX3 (ENSRFEG00010005210) #26	ENSRFEG00010005258	ENSRFEG00010005315 #27	KCNV2 (ENSRFEG00010005355) #28	VLDLR (ENSRFEG00010005438) #29	SMARCA2 (ENSRFEG00010005719) #30	DMRT2 (ENSRFEG00010005950) #32	DMRT3 (ENSRFEG00010006020) #33	DMRT1 (ENSRFEG00010006049)	KANK1 (ENSRFEG00010006153) #35	DOCK8 (ENSRFEG00010006288) #37
Microbat	MODERN SPECIES	1067				ERMP1 (ENSMLUG00000002419) #7	RIC1 (ENSMLUG00000002399) #8	PDCD1LG2 (ENSMLUG00000009533) #10	CD274 (ENSMLUG00000009607) #12	PLGRKT (ENSMLUG00000009582) #11	ENSMLUG00000009569 #16	INSL6 (ENSMLUG00000007982) #17	JAK2 (ENSMLUG00000012756) #18	RCL1 (ENSMLUG00000009654) #19	AK3 (ENSMLUG00000017272) #20	CDC37L1 (ENSMLUG00000017270) #21	PLPP6 (ENSMLUG00000017269) #23	SPATA6L (ENSMLUG00000012996) #22	ENSMLUG00000012988 #24	ENSMLUG00000014482 #25	ENSMLUG00000030513 #25	RFX3 (ENSMLUG00000013765) #26	ENSMLUG00000022735	PUM3 (ENSMLUG00000002309) #27	KCNV2 (ENSMLUG00000002304) #28	VLDLR (ENSMLUG00000002294) #29	SMARCA2 (ENSMLUG00000002342) #30
Megabat	MODERN SPECIES	3886												RCL1 (ENSPVAG00000015752) #19	AK3 (ENSPVAG00000015751) #20	CDC37L1 (ENSPVAG00000015750) #21	PLPP6 (ENSPVAG00000015749) #23	SPATA6L (ENSPVAG00000015748) #22	SLC1A1 (ENSPVAG00000015747) #24
Equus	ANCESTRAL SPECIES	37	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00520000061590	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00410000028750
Horse	MODERN SPECIES	15	KIAA2026 (ENSECAG00000006216)	MLANA (ENSECAG00000009103)	ERMP1 (ENSECAG00000018498) #7	RIC1 (ENSECAG00000006558) #8	PDCD1LG2 (ENSECAG00000020578) #10	CD274 (ENSECAG00000016312) #12	PLGRKT (ENSECAG00000051327) #11	PLGRKT (ENSECAG00000015003) #16	INSL6 (ENSECAG00000053846) #17	JAK2 (ENSECAG00000009119) #18	RCL1 (ENSECAG00000015973) #19	ENSECAG00000058759	AK3 (ENSECAG00000011235) #20	CDC37L1 (ENSECAG00000000269) #21	PLPP6 (ENSECAG00000023969) #23	SPATA6L (ENSECAG00000021902) #22	SLC1A1 (ENSECAG00000010935) #24	GLIS3 (ENSECAG00000020544) #25	RFX3 (ENSECAG00000011075) #26	ENSECAG00000009736	PUM3 (ENSECAG00000017193) #27	KCNV2 (ENSECAG00000016602) #28	ENSECAG00000037169	VLDLR (ENSECAG00000021859) #29	ENSECAG00000045647 #30	ENSECAG00000047891 #30	DMRT2 (ENSECAG00000035701) #32	DMRT3 (ENSECAG00000023412) #33	DMRT1 (ENSECAG00000060160)	KANK1 (ENSECAG00000016219) #35	DOCK8 (ENSECAG00000011917) #37
Donkey	MODERN SPECIES	15	IL33 (ENSEASG00005010691)	ENSEASG00005029347	KIAA2026 (ENSEASG00005010685)	MLANA (ENSEASG00005028588)	ERMP1 (ENSEASG00005010680) #7	RIC1 (ENSEASG00005010673) #8	PDCD1LG2 (ENSEASG00005010667) #10	CD274 (ENSEASG00005010663) #12	PLGRKT (ENSEASG00005034012) #11	ENSEASG00005010659 #16	INSL6 (ENSEASG00005037792) #17	JAK2 (ENSEASG00005010656) #18	RCL1 (ENSEASG00005010653) #19	AK3 (ENSEASG00005010651) #20	CDC37L1 (ENSEASG00005010646) #21	SPATA6L (ENSEASG00005010642) #22	PLPP6 (ENSEASG00005010645) #23	SLC1A1 (ENSEASG00005010637) #24	GLIS3 (ENSEASG00005010634) #25	RFX3 (ENSEASG00005010402) #26	ENSEASG00005010358	ENSEASG00005010361	PUM3 (ENSEASG00005010350) #27	KCNV2 (ENSEASG00005010348) #28	VLDLR (ENSEASG00005010330) #29	ENSEASG00005010323	ENSEASG00005033232 #30	ENSEASG00005032228 #30	DMRT2 (ENSEASG00005010307) #32	DMRT3 (ENSEASG00005010303) #33	DMRT1 (ENSEASG00005010297)
Eulipotyphla	ANCESTRAL SPECIES	775														ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22
Common shrew	MODERN SPECIES	598														AK3 (ENSSARG00000004598) #20	CDC37L1 (ENSSARG00000004588) #21	SPATA6L (ENSSARG00000004566) #22
Hedgehog	MODERN SPECIES	1008																ENSEEUG00000000690 #22
Atlantogenata	ANCESTRAL SPECIES	68	ENSGT00940000162767	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523	ENSGT00940000163353
Xenarthra	ANCESTRAL SPECIES	76	ENSGT00940000163110	ENSGT00390000005185	ENSGT00390000011483	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434.a #16	ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30
Sloth	MODERN SPECIES	780														CDC37L1 (ENSCHOG00000002962) #21	PLPP6 (ENSCHOG00000002960) #23	ENSCHOG00000002951 #22
Armadillo	MODERN SPECIES	1454	KIAA2026 (ENSDNOG00000048191)	ERMP1 (ENSDNOG00000015251) #7	RIC1 (ENSDNOG00000042438) #8	ENSDNOG00000034768	ENSDNOG00000036232	PDCD1LG2 (ENSDNOG00000031933) #10	CD274 (ENSDNOG00000018655) #12	ENSDNOG00000042926 #11	ENSDNOG00000036090 #16	ENSDNOG00000001668 #17	JAK2 (ENSDNOG00000008173) #18	RCL1 (ENSDNOG00000019911) #19	AK3 (ENSDNOG00000038787) #20	CDC37L1 (ENSDNOG00000015975) #21	PLPP6 (ENSDNOG00000015974) #23	SPATA6L (ENSDNOG00000038916) #22	SLC1A1 (ENSDNOG00000001798) #24	ENSDNOG00000042157	ENSDNOG00000035748 #25	ENSDNOG00000042655	ENSDNOG00000012636 #25	RFX3 (ENSDNOG00000018668) #26	PUM3 (ENSDNOG00000008157) #27	KCNV2 (ENSDNOG00000041737) #28	VLDLR (ENSDNOG00000001086) #29	SMARCA2 (ENSDNOG00000006402) #30	ENSDNOG00000040306	ST8SIA4 (ENSDNOG00000046147)
Afrotheria	ANCESTRAL SPECIES	145										ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896.m #25	ENSGT00940000156896.n #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Tenrec	MODERN SPECIES	986															PLPP6 (ENSETEG00000016395) #23	ENSETEG00000016390 #22
Afrotheria_a	ANCESTRAL SPECIES	145										ENSGT00940000154434.b #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907 #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00900000143153	ENSGT00940000156896.m #25	ENSGT00940000156896.n #25	ENSGT01050000244879.a.a.b #26	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Hyrax	MODERN SPECIES	720																ENSPCAG00000009775 #22
Elephant	MODERN SPECIES	593	SLC2A6 (ENSLAFG00000005401)	CACFD1 (ENSLAFG00000005395)	ADAMTS13 (ENSLAFG00000011278)	REXO4 (ENSLAFG00000011274)	STKLD1 (ENSLAFG00000008238)	ENSLAFG00000016963	ENSLAFG00000006436	MED22 (ENSLAFG00000002513)	SURF6 (ENSLAFG00000026419)	ABO (ENSLAFG00000010293)	INSL6 (ENSLAFG00000007479) #17	JAK2 (ENSLAFG00000007471) #18	RCL1 (ENSLAFG00000017495) #19	AK3 (ENSLAFG00000001126) #20	CDC37L1 (ENSLAFG00000001125) #21	SPATA6L (ENSLAFG00000001121) #22	PLPP6 (ENSLAFG00000001123) #23	SLC1A1 (ENSLAFG00000001120) #24	ENSLAFG00000026125	ENSLAFG00000029971 #25	ENSLAFG00000031654 #25	RFX3 (ENSLAFG00000021602) #26	PUM3 (ENSLAFG00000017341) #27	KCNV2 (ENSLAFG00000017292) #28	VLDLR (ENSLAFG00000015211) #29	SMARCA2 (ENSLAFG00000014061) #30	DMRT2 (ENSLAFG00000008510) #32	DMRT3 (ENSLAFG00000028125) #33	ENSLAFG00000010638	ENSLAFG00000031278 #35	ENSLAFG00000010633 #35
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907.a #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907.a #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907.a #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00960000187477	ENSGT00940000161884
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00940000160907.a #23	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757.w #27	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884.b	ENSGT00940000161466
koala	MODERN SPECIES	113	UHRF2 (ENSPCIG00000009528)	KIAA2026 (ENSPCIG00000016666)	MLANA (ENSPCIG00000016664)	ERMP1 (ENSPCIG00000000514) #7	RIC1 (ENSPCIG00000000440) #8	ENSPCIG00000000400 #10	ENSPCIG00000000358	ENSPCIG00000000288 #12	PLGRKT (ENSPCIG00000008213) #11	ENSPCIG00000034412 #17	ENSPCIG00000036019 #17	JAK2 (ENSPCIG00000000252) #18	RCL1 (ENSPCIG00000000188) #19	ENSPCIG00000000144 #20	CDC37L1 (ENSPCIG00000000083) #21	ENSPCIG00000035241 #22	ENSPCIG00000025428 #23	ENSPCIG00000025425 #23	SLC1A1 (ENSPCIG00000001803) #24	ENSPCIG00000032109 #25	ENSPCIG00000024086 #25	RFX3 (ENSPCIG00000024087) #26	ENSPCIG00000030606	PUM3 (ENSPCIG00000030598) #27	ENSPCIG00000030552	ENSPCIG00000030550	NTN3 (ENSPCIG00000030549)	TBC1D24 (ENSPCIG00000030548)	AMDHD2 (ENSPCIG00000030546)	ENSPCIG00000030545	ENSPCIG00000031802
Common wonbat	MODERN SPECIES	1009	ENSVURG00010005615	KDM4C (ENSVURG00010005641)	GLDC (ENSVURG00010005739)	UHRF2 (ENSVURG00010006652)	KIAA2026 (ENSVURG00010006687)	MLANA (ENSVURG00010006707)	ERMP1 (ENSVURG00010006720) #7	RIC1 (ENSVURG00010006750) #8	CD274 (ENSVURG00010006794) #12	PLGRKT (ENSVURG00010006799) #11	JAK2 (ENSVURG00010006805) #18	RCL1 (ENSVURG00010006818) #19	AK3 (ENSVURG00010006826) #20	CDC37L1 (ENSVURG00010006832) #21	PLPP6 (ENSVURG00010006844) #23	ENSVURG00010006853 #22	SLC1A1 (ENSVURG00010006864) #24	GLIS3 (ENSVURG00010006895) #25	RFX3 (ENSVURG00010006911) #26	ENSVURG00010006948 #27	ENSVURG00010006968	ENSVURG00010006992	NTN3 (ENSVURG00010007004)	TBC1D24 (ENSVURG00010007018)	ENSVURG00010007067	AMDHD2 (ENSVURG00010007093)	ENSVURG00010007136	ENSVURG00010007142	ZNF316 (ENSVURG00010007148)	ZKSCAN2 (ENSVURG00010007162)	ENSVURG00010007173
Wallaby	MODERN SPECIES	1644																ENSMEUG00000011917 #22
Tasmanian devil	MODERN SPECIES		UHRF2 (ENSSHAG00000023237)	ENSSHAG00000031943	KIAA2026 (ENSSHAG00000030776)	MLANA (ENSSHAG00000006138)	ERMP1 (ENSSHAG00000004720) #7	RIC1 (ENSSHAG00000000924) #8	ENSSHAG00000004176 #10	CD274 (ENSSHAG00000002682) #12	PLGRKT (ENSSHAG00000001757) #11	ENSSHAG00000015262 #17	JAK2 (ENSSHAG00000014900) #18	RCL1 (ENSSHAG00000014086) #19	ENSSHAG00000029924	AK3 (ENSSHAG00000028635) #20	CDC37L1 (ENSSHAG00000013393) #21	ENSSHAG00000012947 #22	PLPP6 (ENSSHAG00000026797) #23	SLC1A1 (ENSSHAG00000012371) #24	GLIS3 (ENSSHAG00000030971) #25	ENSSHAG00000028825	RFX3 (ENSSHAG00000003775) #26	ENSSHAG00000002395	ENSSHAG00000003730 #27	ENSSHAG00000000892	ENSSHAG00000031126	ENSSHAG00000025501	ENSSHAG00000014430	ATP6V0C (ENSSHAG00000014251)	ENSSHAG00000027414	ENSSHAG00000013445	ENSSHAG00000013237
Opossum	MODERN SPECIES	5	KIAA2026 (ENSMODG00000015293)	MLANA (ENSMODG00000015296)	ERMP1 (ENSMODG00000015324) #7	RIC1 (ENSMODG00000015344) #8	ENSMODG00000015349 #10	ENSMODG00000015352 #12	PLGRKT (ENSMODG00000015353) #11	RFLB (ENSMODG00000048062) #17	JAK2 (ENSMODG00000015373) #18	RCL1 (ENSMODG00000015377) #19	ENSMODG00000029481	AK3 (ENSMODG00000042741) #20	CDC37L1 (ENSMODG00000015385) #21	ENSMODG00000022953 #23	ENSMODG00000051594 #23	ENSMODG00000025440 #22	SLC1A1 (ENSMODG00000015399) #24	ENSMODG00000045366	GLIS3 (ENSMODG00000015403) #25	ENSMODG00000044455	ENSMODG00000039449	RFX3 (ENSMODG00000015410) #26	ENSMODG00000015412	PUM3 (ENSMODG00000015417) #27	PBK (ENSMODG00000015425)	ENSMODG00000015420	ENSMODG00000015432	NTN3 (ENSMODG00000015434)	TBC1D24 (ENSMODG00000015436)	ENSMODG00000042495	AMDHD2 (ENSMODG00000015443)
Platypus	MODERN SPECIES	88	GLDC (ENSOANG00000041168)	UHRF2 (ENSOANG00000001083)	KIAA2026 (ENSOANG00000015760)	MLANA (ENSOANG00000036136)	ERMP1 (ENSOANG00000010083) #7	RIC1 (ENSOANG00000010088) #8	ENSOANG00000010090 #10	CD274 (ENSOANG00000010091) #12	PLGRKT (ENSOANG00000013191) #11	ENSOANG00000031851 #17	JAK2 (ENSOANG00000010092) #18	RCL1 (ENSOANG00000013193) #19	AK3 (ENSOANG00000001505) #20	ENSOANG00000049559	CDC37L1 (ENSOANG00000001511) #21	ENSOANG00000036739 #22	ENSOANG00000039420 #23	SLC1A1 (ENSOANG00000013192) #24	GLIS3 (ENSOANG00000014997) #25	RFX3 (ENSOANG00000014996) #26	ENSOANG00000043031	PUM3 (ENSOANG00000014995) #27	KCNV2 (ENSOANG00000014994) #28	VLDLR (ENSOANG00000014993) #29	SMARCA2 (ENSOANG00000008299) #30	ENSOANG00000008297	DMRT2 (ENSOANG00000008296) #32	DMRT3 (ENSOANG00000008295) #33	DMRT1 (ENSOANG00000036834)	KANK1 (ENSOANG00000008293) #35	DOCK8 (ENSOANG00000044143) #37
Sauria	ANCESTRAL SPECIES	5	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00950000185125
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Episquamata	ANCESTRAL SPECIES	6	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Elapidae	ANCESTRAL SPECIES	7	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523
Elapidae_a	ANCESTRAL SPECIES	101	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489
Blue-lipped sea krait	MODERN SPECIES	4192														AK3 (ENSLLTG00000012784) #20	CDC37L1 (ENSLLTG00000012778) #21	SPATA6L (ENSLLTG00000012755) #22	SLC1A1 (ENSLLTG00000012737) #24	ENSLLTG00000012730
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000155804	ENSGT00940000153617.D	ENSGT01010000229860	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876.m #37	ENSGT00950000185125	ENSGT00640000091523
Mainland tiger snake	MODERN SPECIES	1	ENSNSUG00000020021	KDM4C (ENSNSUG00000019947)	GLDC (ENSNSUG00000019946)	UHRF2 (ENSNSUG00000019944)	KIAA2026 (ENSNSUG00000019940)	ENSNSUG00000019939 #7	ENSNSUG00000019938 #7	RIC1 (ENSNSUG00000019937) #8	PDCD1LG2 (ENSNSUG00000019936) #10	PLGRKT (ENSNSUG00000019935) #11	JAK2 (ENSNSUG00000019934) #18	ENSNSUG00000019932 #19	ENSNSUG00000019931 #19	AK3 (ENSNSUG00000019930) #20	CDC37L1 (ENSNSUG00000019929) #21	SPATA6L (ENSNSUG00000019928) #22	SLC1A1 (ENSNSUG00000019926) #24	GLIS3 (ENSNSUG00000019925) #25	RFX3 (ENSNSUG00000019919) #26	ENSNSUG00000019918	PUM3 (ENSNSUG00000019917) #27	KCNV2 (ENSNSUG00000019916) #28	VLDLR (ENSNSUG00000019901) #29	SMARCA2 (ENSNSUG00000018108) #30	DMRT2 (ENSNSUG00000018057) #32	DMRT3 (ENSNSUG00000018056) #33	DMRT1 (ENSNSUG00000018051)	KANK1 (ENSNSUG00000018050) #35	DOCK8 (ENSNSUG00000018049) #37	ENSNSUG00000018048	ENSNSUG00000018047
Lizard	MODERN SPECIES	1	GLDC (ENSACAG00000004393)	ENSACAG00000044974	UHRF2 (ENSACAG00000004142)	KIAA2026 (ENSACAG00000004132)	MLANA (ENSACAG00000004131)	ERMP1 (ENSACAG00000004052) #7	RIC1 (ENSACAG00000003988) #8	PDCD1LG2 (ENSACAG00000029075) #10	PLGRKT (ENSACAG00000003966) #11	ENSACAG00000024061 #17	ENSACAG00000042874	JAK2 (ENSACAG00000003673) #18	RCL1 (ENSACAG00000003640) #19	AK3 (ENSACAG00000003605) #20	CDC37L1 (ENSACAG00000003578) #21	SPATA6L (ENSACAG00000029209) #22	ENSACAG00000043625	SLC1A1 (ENSACAG00000003433) #24	ENSACAG00000036408	GLIS3 (ENSACAG00000003374) #25	RFX3 (ENSACAG00000003262) #26	ENSACAG00000035469	ENSACAG00000003227	PUM3 (ENSACAG00000003174) #27	KCNV2 (ENSACAG00000003138) #28	VLDLR (ENSACAG00000003015) #29	SMARCA2 (ENSACAG00000002423) #30	DMRT2 (ENSACAG00000002411) #32	DMRT3 (ENSACAG00000002401) #33	DMRT1 (ENSACAG00000002356)	KANK1 (ENSACAG00000002270) #35
Laterata	ANCESTRAL SPECIES	7	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24
Common wall lizard	MODERN SPECIES	8	KDM4C (ENSPMRG00000020731)	GLDC (ENSPMRG00000020751)	UHRF2 (ENSPMRG00000020766)	KIAA2026 (ENSPMRG00000020779)	MLANA (ENSPMRG00000020786)	ERMP1 (ENSPMRG00000020796) #7	RIC1 (ENSPMRG00000020809) #8	PDCD1LG2 (ENSPMRG00000020831) #10	PLGRKT (ENSPMRG00000020836) #11	ENSPMRG00000020840 #17	JAK2 (ENSPMRG00000020898) #18	RCL1 (ENSPMRG00000021189) #19	AK3 (ENSPMRG00000021204) #20	CDC37L1 (ENSPMRG00000021219) #21	ENSPMRG00000021237	SPATA6L (ENSPMRG00000021247) #22	SLC1A1 (ENSPMRG00000021278) #24	ACO1 (ENSPMRG00000021323)	RIGI (ENSPMRG00000021389)	TOPORS (ENSPMRG00000021472)	NDUFB6 (ENSPMRG00000021478)	ENSPMRG00000021492	TMEM215 (ENSPMRG00000021506)	LPAR1 (ENSPMRG00000021509)	MUSK (ENSPMRG00000021520)	SVEP1 (ENSPMRG00000021582)	TXNDC8 (ENSPMRG00000021737)	TXN (ENSPMRG00000021752)	PTGR1 (ENSPMRG00000021759)	ENSPMRG00000021777	SMC2 (ENSPMRG00000021801)
Argentine black and white tegu	MODERN SPECIES	25	ENSSMRG00000012379	RFX3 (ENSSMRG00000012376) #26	GLIS3 (ENSSMRG00000012362) #25	ENSSMRG00000012349	KIAA2026 (ENSSMRG00000012326)	MLANA (ENSSMRG00000012325)	ERMP1 (ENSSMRG00000012324) #7	RIC1 (ENSSMRG00000012320) #8	PDCD1LG2 (ENSSMRG00000012319) #10	PLGRKT (ENSSMRG00000012308) #11	ENSSMRG00000012307 #17	JAK2 (ENSSMRG00000012306) #18	RCL1 (ENSSMRG00000012305) #19	AK3 (ENSSMRG00000012300) #20	CDC37L1 (ENSSMRG00000012299) #21	SPATA6L (ENSSMRG00000012298) #22	SLC1A1 (ENSSMRG00000012291) #24
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a #35
Archosauria	ANCESTRAL SPECIES	31	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37
Australian saltwater crocodile	MODERN SPECIES	67	PTPRD (ENSCPRG00005003783)	KDM4C (ENSCPRG00005003854)	GLDC (ENSCPRG00005003953)	UHRF2 (ENSCPRG00005004283)	KIAA2026 (ENSCPRG00005004297)	ERMP1 (ENSCPRG00005004304) #7	RIC1 (ENSCPRG00005004338) #8	PDCD1LG2 (ENSCPRG00005004350) #10	ENSCPRG00005004356 #10	PLGRKT (ENSCPRG00005004366) #11	ENSCPRG00005004371 #17	JAK2 (ENSCPRG00005004373) #18	RCL1 (ENSCPRG00005004387) #19	AK3 (ENSCPRG00005004395) #20	CDC37L1 (ENSCPRG00005004396) #21	SPATA6L (ENSCPRG00005004407) #22	SLC1A1 (ENSCPRG00005004424) #24	GLIS3 (ENSCPRG00005004466) #25	RFX3 (ENSCPRG00005004493) #26	ENSCPRG00005004519	PUM3 (ENSCPRG00005004547) #27	KCNV2 (ENSCPRG00005004751) #28	VLDLR (ENSCPRG00005004758) #29	ENSCPRG00005004774	SMARCA2 (ENSCPRG00005004803) #30	DMRT2 (ENSCPRG00005004868) #32	DMRT3 (ENSCPRG00005004879) #33	DMRT1 (ENSCPRG00005004893)	KANK1 (ENSCPRG00005004939) #35	DOCK8 (ENSCPRG00005004968) #37	ENSCPRG00005005028
Aves	ANCESTRAL SPECIES	45	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b.e #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00950000185125
African ostrich	MODERN SPECIES	535											PLGRKT (ENSSCUG00000004547) #11	JAK2 (ENSSCUG00000004554) #18	RCL1 (ENSSCUG00000004564) #19	AK3 (ENSSCUG00000004569) #20	ENSSCUG00000004577 #21	SPATA6L (ENSSCUG00000004585) #22	SLC1A1 (ENSSCUG00000004590) #24	TOPORS (ENSSCUG00000004599)
Cryptodira	ANCESTRAL SPECIES	48			ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a #35	ENSGT00950000185504
Chinese turtle	MODERN SPECIES	475					KIAA2026 (ENSPSIG00000005276)	MLANA (ENSPSIG00000005246)	ENSPSIG00000017249	ERMP1 (ENSPSIG00000015685) #7	RIC1 (ENSPSIG00000015494) #8	CD274 (ENSPSIG00000015064) #12	PLGRKT (ENSPSIG00000015021) #11	JAK2 (ENSPSIG00000012878) #18	RCL1 (ENSPSIG00000012302) #19	AK3 (ENSPSIG00000011687) #20	CDC37L1 (ENSPSIG00000010470) #21	ENSPSIG00000010075 #22	SLC1A1 (ENSPSIG00000007272) #24	GLIS3 (ENSPSIG00000005966) #25
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a #35	ENSGT00950000185504
Emydidae	ANCESTRAL SPECIES	20	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a #35	ENSGT00950000185504	ENSGT00940000155876 #37
Three-toed box turtle	MODERN SPECIES	50	UBQLN1 (ENSTMTG00000017089)	IDNK (ENSTMTG00000017082)	FRMD3 (ENSTMTG00000016969)	ENSTMTG00000016945	ENSTMTG00000016905	ERMP1 (ENSTMTG00000016873) #7	RIC1 (ENSTMTG00000016776) #8	PDCD1LG2 (ENSTMTG00000016752) #10	CD274 (ENSTMTG00000016745) #12	PLGRKT (ENSTMTG00000016710) #11	ENSTMTG00000016706 #17	JAK2 (ENSTMTG00000016660) #18	RCL1 (ENSTMTG00000016634) #19	AK3 (ENSTMTG00000016623) #20	CDC37L1 (ENSTMTG00000016607) #21	SPATA6L (ENSTMTG00000016584) #22	SLC1A1 (ENSTMTG00000016551) #24	GLIS3 (ENSTMTG00000016537) #25	RFX3 (ENSTMTG00000016347) #26	ENSTMTG00000016298	PUM3 (ENSTMTG00000016264) #27	KCNV2 (ENSTMTG00000016251) #28	VLDLR (ENSTMTG00000016110) #29	SMARCA2 (ENSTMTG00000016037) #30	DMRT2 (ENSTMTG00000016004) #32	DMRT3 (ENSTMTG00000015991) #33	DMRT1 (ENSTMTG00000015977)	ENSTMTG00000015959	KANK1 (ENSTMTG00000015933) #35	ENSTMTG00000015924	DOCK8 (ENSTMTG00000006799) #37
painted turtle	MODERN SPECIES	15	UBQLN1 (ENSCPBG00000025496)	IDNK (ENSCPBG00000025495)	FRMD3 (ENSCPBG00000025494)	ENSCPBG00000025493	ENSCPBG00000025492	ERMP1 (ENSCPBG00000025490) #7	RIC1 (ENSCPBG00000025489) #8	PDCD1LG2 (ENSCPBG00000025487) #10	CD274 (ENSCPBG00000025486) #12	PLGRKT (ENSCPBG00000025485) #11	ENSCPBG00000025484 #17	JAK2 (ENSCPBG00000025483) #18	RCL1 (ENSCPBG00000025481) #19	AK3 (ENSCPBG00000025480) #20	CDC37L1 (ENSCPBG00000025479) #21	SPATA6L (ENSCPBG00000025478) #22	SLC1A1 (ENSCPBG00000025475) #24	GLIS3 (ENSCPBG00000025474) #25	RFX3 (ENSCPBG00000025473) #26	ENSCPBG00000025471	PUM3 (ENSCPBG00000025470) #27	KCNV2 (ENSCPBG00000025469) #28	VLDLR (ENSCPBG00000025468) #29	SMARCA2 (ENSCPBG00000025463) #30	DMRT2 (ENSCPBG00000025462) #32	DMRT3 (ENSCPBG00000025461) #33	DMRT1 (ENSCPBG00000025458)	KANK1 (ENSCPBG00000025457) #35	ENSCPBG00000025452	DOCK8 (ENSCPBG00000025439) #37	ENSCPBG00000025429
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000008742	ENSGT00940000156437.i	ENSGT00390000003364	ENSGT00940000158577	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00940000161430 #12	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00950000186013	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757.c #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a.ib #35	ENSGT00940000155876 #37	ENSGT00950000185125
Abingdon island giant tortoise	MODERN SPECIES	46				FRMD3 (ENSCABG00000004752)	MLANA (ENSCABG00000004750)	ERMP1 (ENSCABG00000004749) #7	RIC1 (ENSCABG00000004424) #8	PDCD1LG2 (ENSCABG00000004409) #10	CD274 (ENSCABG00000004333) #12	PLGRKT (ENSCABG00000004330) #11	ENSCABG00000004329 #17	JAK2 (ENSCABG00000000622) #18	RCL1 (ENSCABG00000000189) #19	AK3 (ENSCABG00000000145) #20	CDC37L1 (ENSCABG00000000093) #21	ENSCABG00000000071 #22
Goode s thornscrub tortoise	MODERN SPECIES	20	GKAP1 (ENSGEVG00005017882)	UBQLN1 (ENSGEVG00005017836)	IDNK (ENSGEVG00005017811)	FRMD3 (ENSGEVG00005017673)	MLANA (ENSGEVG00005017623)	ERMP1 (ENSGEVG00005017610) #7	RIC1 (ENSGEVG00005017573) #8	PDCD1LG2 (ENSGEVG00005017549) #10	CD274 (ENSGEVG00005017525) #12	PLGRKT (ENSGEVG00005017508) #11	ENSGEVG00005017487 #17	JAK2 (ENSGEVG00005017459) #18	RCL1 (ENSGEVG00005017434) #19	AK3 (ENSGEVG00005017423) #20	CDC37L1 (ENSGEVG00005017405) #21	SPATA6L (ENSGEVG00005017368) #22	SLC1A1 (ENSGEVG00005017274) #24	ENSGEVG00005017260	GLIS3 (ENSGEVG00005017217) #25	RFX3 (ENSGEVG00005017166) #26	ENSGEVG00005017017	ENSGEVG00005016771 #27	KCNV2 (ENSGEVG00005016696) #28	SMARCA2 (ENSGEVG00005015950) #30	DMRT2 (ENSGEVG00005015890) #32	DMRT3 (ENSGEVG00005015865) #33	DMRT1 (ENSGEVG00005015585)	KANK1 (ENSGEVG00005015437) #35	DOCK8 (ENSGEVG00005015343) #37	ENSGEVG00005015265	PGM5 (ENSGEVG00005014982)
Anura	ANCESTRAL SPECIES	29	ENSGT00940000153617.D	ENSGT00940000154930	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839 #7	ENSGT00390000002955 #8	ENSGT00940000161373 #10	ENSGT00390000000375 #11	ENSGT00940000154434 #17	ENSGT00940000155640 #18	ENSGT00530000063404.a #19	ENSGT00940000155120 #20	ENSGT00390000013443.d #21	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00940000156896 #25	ENSGT01050000244879.a.a.b #26	ENSGT00940000164013	ENSGT00390000015757 #27	ENSGT00940000157438 #28	ENSGT00940000155460 #29	ENSGT00940000154821.b #30	ENSGT00940000156282.a.a #32	ENSGT00940000160420 #33	ENSGT00940000156489	ENSGT00940000154886.a.a #35	ENSGT00940000155876 #37	ENSGT00640000091523	ENSGT00940000164556
Frog	MODERN SPECIES		gldc (ENSXETG00000000543)	uhrf2 (ENSXETG00000000567)	kiaa2026 (ENSXETG00000000574)	fxn (ENSXETG00000039175)	mlana (ENSXETG00000037374)	ermp1 (ENSXETG00000000577) #7	ric1 (ENSXETG00000000582) #8	pdcd1lg2 (ENSXETG00000040791) #10	ENSXETG00000036720 #10	plgrkt (ENSXETG00000000587) #11	jak2 (ENSXETG00000000586) #18	ENSXETG00000042090	rcl1 (ENSXETG00000000592) #19	ak3 (ENSXETG00000000588) #20	cdc37l1 (ENSXETG00000000595) #21	spata6l (ENSXETG00000030483) #22	slc1a1 (ENSXETG00000011685) #24	glis3 (ENSXETG00000011692) #25	rfx3 (ENSXETG00000011698) #26	crygbl.2 (ENSXETG00000048659)	carm1p1 (ENSXETG00000036672)	pum3 (ENSXETG00000011707) #27	kcnv2 (ENSXETG00000011708) #28	vldlr (ENSXETG00000011709) #29	smarca2 (ENSXETG00000015299) #30	dmrt2 (ENSXETG00000033983) #32	dmrt3 (ENSXETG00000015285) #33	dmrt1 (ENSXETG00000002277)	kank1 (ENSXETG00000002278) #35	dock8 (ENSXETG00000001648) #37	cbwd2 (ENSXETG00000001656)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000001734	ENSLLEG00000001719	ERMP1 (ENSLLEG00000001621) #7	RIC1 (ENSLLEG00000001526) #8	ENSLLEG00000001500	PDCD1LG2 (ENSLLEG00000001467) #10	ENSLLEG00000001414 #10	PLGRKT (ENSLLEG00000001384) #11	ENSLLEG00000001371 #17	JAK2 (ENSLLEG00000001323) #18	ENSLLEG00000001296	RCL1 (ENSLLEG00000001251) #19	ENSLLEG00000001238	AK3 (ENSLLEG00000001204) #20	CDC37L1 (ENSLLEG00000001174) #21	SPATA6L (ENSLLEG00000001082) #22	SLC1A1 (ENSLLEG00000001013) #24	ENSLLEG00000000928	GLIS3 (ENSLLEG00000000897) #25	ENSLLEG00000000876	ENSLLEG00000000868	RFX3 (ENSLLEG00000000718) #26	PUM3 (ENSLLEG00000000665) #27	KCNV2 (ENSLLEG00000000652) #28	VLDLR (ENSLLEG00000000597) #29	ENSLLEG00000000580	SMARCA2 (ENSLLEG00000000350) #30	ENSLLEG00000000280	ENSLLEG00000000269	ENSLLEG00000000229	DMRT2 (ENSLLEG00000000206) #32
Coelacanth	MODERN SPECIES	705													si:dkey-3h3.3 (ENSLACG00000003908)	AK3 (ENSLACG00000004544) #20	CDC37L1 (ENSLACG00000005200) #21	SPATA6L (ENSLACG00000022591) #22	SLC1A1 (ENSLACG00000007779) #24	ENSLACG00000010250	GLIS3 (ENSLACG00000011383) #25	ENSLACG00000011838
Actinopterygii	ANCESTRAL SPECIES	376																ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a	ENSGT00940000154194.c.a	ENSGT00940000154194.c.b	ENSGT00940000158205	ENSGT00940000164379	ENSGT00940000164529
Neopterygii	ANCESTRAL SPECIES	112	ENSGT00940000155527	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT00390000017890	ENSGT00940000159617	ENSGT00410000029064	ENSGT00390000011749	ENSGT00390000001491.a	ENSGT00390000010434.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000159769.b	ENSGT00530000063821.b.b #22	ENSGT00940000155397.b #24	ENSGT00390000014293.a	ENSGT00940000161376
Osteoglossocephalai	ANCESTRAL SPECIES	209														ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00730000110920.b.a.b	ENSGT00390000009819.a.a	ENSGT00940000158215	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000007252.c	ENSGT00940000154949.b
Osteoglossiformes	ANCESTRAL SPECIES	103						ENSGT00940000157235.g	ENSGT00940000160460	ENSGT00950000183137.b.a.e	ENSGT00940000155800.a.b.a	ENSGT00390000015958.d	ENSGT00940000165054.A	ENSGT00940000157294.d.a	ENSGT00390000007332	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a.g	ENSGT00940000155429.a.a.e	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00940000154404.b.e.b	ENSGT00730000110920.b.a.b	ENSGT00940000158215.i	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000178140
Asian bonytongue	MODERN SPECIES	20	USP53 (ENSSFOG00015018293)	myoz2a (ENSSFOG00015018331)	SYNPO2 (ENSSFOG00015032764)	ENSSFOG00015018368	KCNIP4 (ENSSFOG00015018405)	ADGRA3 (ENSSFOG00015018468)	gba3 (ENSSFOG00015018516)	PPARGC1A (ENSSFOG00015018522)	dhx15 (ENSSFOG00015018549)	ccdc149a (ENSSFOG00015018593)	ENSSFOG00015025930	lgi2a (ENSSFOG00015018648)	sepsecs (ENSSFOG00015030052)	ENSSFOG00015018699	trmt10a (ENSSFOG00015018710)	spata6l (ENSSFOG00015018726) #22	slc1a1 (ENSSFOG00015018753) ##24	RAP1GDS1 (ENSSFOG00015018811)	tspan5a (ENSSFOG00015018876)	ENSSFOG00015018901	frem1a (ENSSFOG00015018913)	ACO1 (ENSSFOG00015018941)	ENSSFOG00015019048	ppp1r15a (ENSSFOG00015019060)	ENSSFOG00015019067	ENSSFOG00015019098	haus6 (ENSSFOG00015019236)	plin2 (ENSSFOG00015019287)	larp7 (ENSSFOG00015019344)	ENSSFOG00015019358	ENSSFOG00015028094
P. kingsleyae	MODERN SPECIES	182																spata6l (ENSPKIG00000022918) #22	slc1a1 (ENSPKIG00000022951) ##24	RAP1GDS1 (ENSPKIG00000023019)	tspan5a (ENSPKIG00000023070)	ENSPKIG00000023099	frem1a (ENSPKIG00000023122)	ACO1 (ENSPKIG00000023168)	ENSPKIG00000023206	ACER2 (ENSPKIG00000023221)	ENSPKIG00000023249	ENSPKIG00000023299	haus6 (ENSPKIG00000023404)	plin2 (ENSPKIG00000023455)	larp7 (ENSPKIG00000023484)	ENSPKIG00000023525	ENSPKIG00000023540
Clupeocephala	ANCESTRAL SPECIES	208														ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00730000110920.b.a.b	ENSGT00940000158215	ENSGT00390000008250	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000007252.c	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	183	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b
Acanthomorphata	ANCESTRAL SPECIES	222										ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005008834	ing2 (ENSMMDG00005008832)	ENSMMDG00005008830	rwdd (ENSMMDG00005008826)	ENSMMDG00005008824	ENSMMDG00005008709	ENSMMDG00005008697	ENSMMDG00005008692	H2AZ1 (ENSMMDG00005008655)	mllt3 (ENSMMDG00005008643)	ENSMMDG00005008623	hacd4 (ENSMMDG00005008613)	C4orf54 (ENSMMDG00005008610)	trmt10a (ENSMMDG00005008608)	ENSMMDG00005008607	ENSMMDG00005008605 #22	slc1a1 (ENSMMDG00005008604) ##24	RAP1GDS1 (ENSMMDG00005008038)	tspan5a (ENSMMDG00005008023)	ENSMMDG00005008019	ENSMMDG00005008015	URGCP (ENSMMDG00005008014)	pop7 (ENSMMDG00005008010)	epoa (ENSMMDG00005008007)	ENSMMDG00005008003	ufsp1 (ENSMMDG00005008000)	ENSMMDG00005007997	ENSMMDG00005007994	ENSMMDG00005007990	GIGYF1 (ENSMMDG00005007983)	wrap53 (ENSMMDG00005007878)
Percomorphaceae	ANCESTRAL SPECIES	39	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Pomacentridae	ANCESTRAL SPECIES	127	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000159769.a.a.g.a	ENSGT00940000155279.C.a.a	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b	ENSGT00390000004396.h	ENSGT00940000156171.h	ENSGT00940000157587.l	ENSGT00390000015089	ENSGT00390000013722
Amphiprion	ANCESTRAL SPECIES	82	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a	ENSGT00940000181321	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b	ENSGT00390000004396.h	ENSGT00940000156171.h	ENSGT00940000157587.l	ENSGT00390000015089	ENSGT00390000013722
Clown anemonefish	MODERN SPECIES	2512									csnk1g2a (ENSAOCG00000009054)	mrpl37 (ENSAOCG00000009023)	ACOT11 (ENSAOCG00000009002)	ENSAOCG00000008977	C4orf54 (ENSAOCG00000008964)	ENSAOCG00000008942	trmt10a (ENSAOCG00000008931)	ENSAOCG00000008901 #22	slc1a1 (ENSAOCG00000008874) ##24	RAP1GDS1 (ENSAOCG00000008813)	TSPAN5 (ENSAOCG00000008728)	ENSAOCG00000008691	frem1a (ENSAOCG00000008671)	ENSAOCG00000001905
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000015592	AFAP1 (ENSAPEG00000015549)	ABLIM2 (ENSAPEG00000015498)	ENSAPEG00000015472	zcchc4 (ENSAPEG00000015422)	ENSAPEG00000015356	pde5ab (ENSAPEG00000015273)	mad2l1 (ENSAPEG00000015250)	ARSJ (ENSAPEG00000015214)	camk2d1 (ENSAPEG00000015153)	ANK2 (ENSAPEG00000014987)	ENSAPEG00000014935	C4orf54 (ENSAPEG00000014909)	ENSAPEG00000014895	trmt10a (ENSAPEG00000014878)	ENSAPEG00000014841 #22	slc1a1 (ENSAPEG00000014778) ##24	RAP1GDS1 (ENSAPEG00000014708)	ENSAPEG00000014622	ENSAPEG00000014599	frem1a (ENSAPEG00000014471)	ENSAPEG00000014448	PAQR9 (ENSAPEG00000014435)	ACO1 (ENSAPEG00000014370)	PPM1K (ENSAPEG00000014344)	ENSAPEG00000014291	rnf150b (ENSAPEG00000014266)	ENSAPEG00000014241	abce1 (ENSAPEG00000014179)	anapc10 (ENSAPEG00000014148)	ENSAPEG00000014125
Spiny chromis	MODERN SPECIES	535												camk2d1 (ENSAPOG00000009363)	ANK2 (ENSAPOG00000009249)	ENSAPOG00000009097	trmt10a (ENSAPOG00000009061)	spata6l (ENSAPOG00000009017) #22	slc1a1 (ENSAPOG00000008953) ##24	RAP1GDS1 (ENSAPOG00000008879)	TSPAN5 (ENSAPOG00000008786)	frem1a (ENSAPOG00000008735)	ENSAPOG00000008711	PAQR9 (ENSAPOG00000008687)	ACO1 (ENSAPOG00000008670)	PPM1K (ENSAPOG00000008578)	ENSAPOG00000008540	ENSAPOG00000008517	rnf150b (ENSAPOG00000000222)	ENSAPOG00000008416	abce1 (ENSAPOG00000008022)	anapc10 (ENSAPOG00000007954)	ENSAPOG00000007923
Bicolor damselfish	MODERN SPECIES	760										ENSSPAG00000005909	ANK2 (ENSSPAG00000005945)	C4orf54 (ENSSPAG00000006026)	ENSSPAG00000006032	trmt10a (ENSSPAG00000006046)	ENSSPAG00000006059	spata6l (ENSSPAG00000006089) #22	slc1a1 (ENSSPAG00000006115) ##24	RAP1GDS1 (ENSSPAG00000006243)	tspan5a (ENSSPAG00000006333)	ENSSPAG00000006375	frem1a (ENSSPAG00000006395)
Atherinomorphae	ANCESTRAL SPECIES	34	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Oryzias	ANCESTRAL SPECIES	53	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000155475.h
Oryzias_b	ANCESTRAL SPECIES	37	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00940000159954	ENSGT00940000155150.a	ENSGT00940000155279.C.a.a.l
Indian medaka	MODERN SPECIES	19	slx1b (ENSOMEG00000005075)	ENSOMEG00000005062	ENSOMEG00000005048	ing2 (ENSOMEG00000005040)	ENSOMEG00000005031	rwdd (ENSOMEG00000005015)	ENSOMEG00000004977	ENSOMEG00000004908	H2AZ1 (ENSOMEG00000004889)	mllt3 (ENSOMEG00000004860)	ENSOMEG00000004799	ENSOMEG00000004778	hacd4 (ENSOMEG00000004757)	ENSOMEG00000004740	trmt10a (ENSOMEG00000004720)	spata6l (ENSOMEG00000004701) #22	slc1a1 (ENSOMEG00000004659) ##24	RAP1GDS1 (ENSOMEG00000004595)	ENSOMEG00000004522	ENSOMEG00000004502	frem1a (ENSOMEG00000004492)	ENSOMEG00000004458	PAQR9 (ENSOMEG00000004455)	AFAP1 (ENSOMEG00000004442)	mad2l1 (ENSOMEG00000004375)	pde5ab (ENSOMEG00000004350)	zcchc4 (ENSOMEG00000004315)	ABLIM2 (ENSOMEG00000004271)	ARSJ (ENSOMEG00000004257)	ENSOMEG00000004226	ENSOMEG00000004170
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000023659	ets2 (ENSOJAG00000023653)	zgc:112271 (ENSOJAG00000023652)	SLX1 (ENSOJAG00000023649)	ENSOJAG00000023648	ENSOJAG00000023645	ing2 (ENSOJAG00000023641)	rwdd (ENSOJAG00000023638)	ENSOJAG00000023631	ENSOJAG00000023625	H2AZ1 (ENSOJAG00000023617)	mllt3 (ENSOJAG00000023610)	hacd4 (ENSOJAG00000023540)	ENSOJAG00000023536	trmt10a (ENSOJAG00000023535)	ENSOJAG00000023530 #22	ANK2 (ENSOJAG00000023500)	camk2d1 (ENSOJAG00000023195)	ARSJ (ENSOJAG00000023050)	ABLIM2 (ENSOJAG00000023009)	zcchc4 (ENSOJAG00000022997)	pde5ab (ENSOJAG00000022845)	mad2l1 (ENSOJAG00000022783)	AFAP1 (ENSOJAG00000022763)	PAQR9 (ENSOJAG00000022752)	ENSOJAG00000022745	ENSOJAG00000022714	TSPAN5 (ENSOJAG00000022700)	RAP1GDS1 (ENSOJAG00000022683)	slc1a1 (ENSOJAG00000022655) ##24
Oryzias_a	ANCESTRAL SPECIES	103	ENSGT00510000047760	ENSGT00390000013368	ENSGT00950000182899.C.b	ENSGT00940000177470	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893
Chinese medaka	MODERN SPECIES	1095									ENSOSIG00000014032	ENSOSIG00000014038	ENSOSIG00000014040	ENSOSIG00000014046	hacd4 (ENSOSIG00000014061)	ENSOSIG00000014062	trmt10a (ENSOSIG00000014065)	ENSOSIG00000014067 #22	slc1a1 (ENSOSIG00000014068) ##24	ENSOSIG00000014069	RAP1GDS1 (ENSOSIG00000014070)
Cyprinodontiformes	ANCESTRAL SPECIES	29	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Aplocheiloidei	ANCESTRAL SPECIES	49	ENSGT00940000167160	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.l	ENSGT00940000155150.a	ENSGT00940000159954.f	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370
Mangrove rivulus	MODERN SPECIES	98	ENSKMAG00000005741	zgc:112271 (ENSKMAG00000005724)	slx1b (ENSKMAG00000005714)	ENSKMAG00000005701	ENSKMAG00000005679	ing2 (ENSKMAG00000005666)	rwdd (ENSKMAG00000005646)	ENSKMAG00000005618	ENSKMAG00000005560	H2AZ1 (ENSKMAG00000005524)	mllt3 (ENSKMAG00000005494)	ENSKMAG00000005440	hacd4 (ENSKMAG00000005415)	C4orf54 (ENSKMAG00000005410)	trmt10a (ENSKMAG00000005389)	ENSKMAG00000005378 #22	slc1a1 (ENSKMAG00000005358) ##24	RAP1GDS1 (ENSKMAG00000005283)	tspan5a (ENSKMAG00000005254)
Cyprinodontoidei	ANCESTRAL SPECIES	39	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT01030000240214	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a.k.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Poeciliinae	ANCESTRAL SPECIES	28	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438.k	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00950000183337	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.c	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.a	ENSGT00950000182968.d.a.b.b.a.a	ENSGT00950000182968.d.a.b.b.a.b	ENSGT00940000174504.A.d.b	ENSGT01030000234978.a.b.a	ENSGT00940000174504.A.d.a	ENSGT00940000163911.a.a.b.a.a.a.b.d.b.a	ENSGT00940000162676.a.b.a	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.a	ENSGT00940000162676.a.b.b.a.b
Poecilia	ANCESTRAL SPECIES	40	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438.k	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00950000183337	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.c	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.a	ENSGT00950000182968.d.a.b.b.a.a	ENSGT00950000182968.d.a.b.b.a.b	ENSGT00950000182968.d.a.a.a.d.a.b	ENSGT00940000162676.a.b.a	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.a	ENSGT00940000162676.a.b.b.a.b	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.b.d	ENSGT00950000182968.d.a.a.a.d.a.a.b.a.a.b.b.a.b.b	ENSGT00950000182968.d.b.b.f.g
Guppy	MODERN SPECIES	448	zgc:112271 (ENSPREG00000004331)	slx1b (ENSPREG00000004348)	ENSPREG00000004362	ENSPREG00000004373	ing2 (ENSPREG00000004390)	rwdd (ENSPREG00000004405)	ENSPREG00000004434	ENSPREG00000004450	ENSPREG00000004480	ENSPREG00000004493	H2AZ1 (ENSPREG00000004516)	mllt3 (ENSPREG00000004558)	ENSPREG00000004634	ENSPREG00000004844	trmt10a (ENSPREG00000004857)	ENSPREG00000004878 #22	ENSPREG00000004888	tada2b (ENSPREG00000004900)	grpel1 (ENSPREG00000004940)	SORCS2 (ENSPREG00000004980)	ENSPREG00000005066	ENSPREG00000005102	ENSPREG00000005248	ENSPREG00000005257	ENSPREG00000005284	ENSPREG00000005295	ENSPREG00000005387	ENSPREG00000005405	ENSPREG00000005415	ENSPREG00000005430	ENSPREG00000005441
NAME_6	ANCESTRAL SPECIES																	ENSGT00530000063821.b.b #22
Sailfin molly	MODERN SPECIES	2640																ENSPLAG00000004320 #22	kcnc3a (ENSPLAG00000004328)
NAME_4	ANCESTRAL SPECIES	268								ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT01030000240214	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990
Sheepshead minnow	MODERN SPECIES	1393												ENSCVAG00000001475	hacd4 (ENSCVAG00000000056)	C4orf54 (ENSCVAG00000001483)	trmt10a (ENSCVAG00000001488)	ENSCVAG00000001489 #22
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00980000201372	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT00390000013368	ENSGT00600000085600	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00980000201372	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Climbing perch	MODERN SPECIES	9	ENSATEG00000001584	ENSATEG00000001569	ENSATEG00000001555	ENSATEG00000001543	rwdd (ENSATEG00000001495)	ENSATEG00000001335	ENSATEG00000001304	ENSATEG00000001291	ENSATEG00000001259	mllt3 (ENSATEG00000001197)	ENSATEG00000001189	hacd4 (ENSATEG00000001186)	ENSATEG00000025549	ENSATEG00000001157	ENSATEG00000001123	spata6l (ENSATEG00000028755) #22	slc1a1 (ENSATEG00000001042) ##24	ENSATEG00000000970	tspan5a (ENSATEG00000000935)	ENSATEG00000029290	frem1a (ENSATEG00000000746)	ENSATEG00000000719	ENSATEG00000000657	ENSATEG00000000649	ENSATEG00000000560	ANK2 (ENSATEG00000028978)	camk2d1 (ENSATEG00000000178)	ARSJ (ENSATEG00000000161)	mad2l1 (ENSATEG00000025736)	pde5ab (ENSATEG00000000026)	ENSATEG00000020711
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000006726	ing2 (ENSBSLG00000006746)	ENSBSLG00000006759	rwdd (ENSBSLG00000006769)	ADAM33 (ENSBSLG00000006874)	ENSBSLG00000007408	ENSBSLG00000007728	H2AZ1 (ENSBSLG00000007765)	mllt3 (ENSBSLG00000007827)	ENSBSLG00000007889	hacd4 (ENSBSLG00000007976)	ENSBSLG00000007987	ENSBSLG00000007993	ENSBSLG00000008011	trmt10a (ENSBSLG00000008016)	spata6l (ENSBSLG00000008029) #22	slc1a1 (ENSBSLG00000008046) ##24	RAP1GDS1 (ENSBSLG00000008075)	tspan5a (ENSBSLG00000008154)	ENSBSLG00000008191	frem1a (ENSBSLG00000008195)	ENSBSLG00000008339	PAQR9 (ENSBSLG00000008360)	ACO1 (ENSBSLG00000008395)	camk2d1 (ENSBSLG00000008861)	ARSJ (ENSBSLG00000010364)	mad2l1 (ENSBSLG00000010365)	pde5ab (ENSBSLG00000010390)	ENSBSLG00000011595	ENSBSLG00000011643	ENSBSLG00000011711
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000001872	SLX1 (ENSMAMG00000025620)	ENSMAMG00000024482	ENSMAMG00000001917	ENSMAMG00000024756	rwdd (ENSMAMG00000001945)	ENSMAMG00000001979	ENSMAMG00000002043	ENSMAMG00000002084	mllt3 (ENSMAMG00000002106)	ENSMAMG00000002155	hacd4 (ENSMAMG00000002249)	ENSMAMG00000002270	ENSMAMG00000002277	ENSMAMG00000002282	ENSMAMG00000002291 #22	slc1a1 (ENSMAMG00000002306) ##24	ENSMAMG00000002355	tspan5a (ENSMAMG00000002417)	ENSMAMG00000002471	frem1a (ENSMAMG00000002508)	ENSMAMG00000027140	ENSMAMG00000002904	ENSMAMG00000002915	ENSMAMG00000002963	ENSMAMG00000003089	ENSMAMG00000003180	ENSMAMG00000003272	pde5ab (ENSMAMG00000003200)	zcchc4 (ENSMAMG00000003297)	ENSMAMG00000003336
Carangaria	ANCESTRAL SPECIES	20	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00940000180421	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370
Tongue sole	MODERN SPECIES		ENSCSEG00000018580	gal3st4 (ENSCSEG00000018579)	trappc14 (ENSCSEG00000018568)	ENSCSEG00000018542	ADAM33 (ENSCSEG00000018523)	ENSCSEG00000018501	H2AZ1 (ENSCSEG00000018489)	mllt3 (ENSCSEG00000018464)	ENSCSEG00000018417	hacd4 (ENSCSEG00000018410)	C4orf54 (ENSCSEG00000018405)	ENSCSEG00000018399	ENSCSEG00000018395	ENSCSEG00000018382	trmt10a (ENSCSEG00000018378)	spata6l (ENSCSEG00000018372) #22	slc1a1 (ENSCSEG00000018344) ##24	ENSCSEG00000018336	RAP1GDS1 (ENSCSEG00000018328)	frem1a (ENSCSEG00000018293)	ENSCSEG00000018286	PAQR9 (ENSCSEG00000018284)	DNMT3B (ENSCSEG00000018277)	ACO1 (ENSCSEG00000018262)	ANK2 (ENSCSEG00000018198)	plcb3 (ENSCSEG00000018114)	ENSCSEG00000018098	ppp1r14bb (ENSCSEG00000018093)	si:ch211-285j22.3 (ENSCSEG00000018086)	brms1 (ENSCSEG00000018079)	tmem179ba (ENSCSEG00000018073)
Carangaria_A	ANCESTRAL SPECIES	41	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000155306.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Barramundi perch	MODERN SPECIES	287	ENSLCAG00010022018	ENSLCAG00010022015	ing2 (ENSLCAG00010022011)	ENSLCAG00010022006	rwdd (ENSLCAG00010022001)	ENSLCAG00010021988	ENSLCAG00010021978	ENSLCAG00010021973	H2AZ1 (ENSLCAG00010021932)	mllt3 (ENSLCAG00010021914)	ENSLCAG00010021891	hacd4 (ENSLCAG00010021884)	C4orf54 (ENSLCAG00010021882)	ENSLCAG00010021881	trmt10a (ENSLCAG00010021876)	spata6l (ENSLCAG00010021871) #22	slc1a1 (ENSLCAG00010021858) ##24	RAP1GDS1 (ENSLCAG00010021802)	tspan5a (ENSLCAG00010021781)	frem1a (ENSLCAG00010021751)	ENSLCAG00010021743	PAQR9 (ENSLCAG00010021736)	ACO1 (ENSLCAG00010021627)
Seriola	ANCESTRAL SPECIES	64						ENSGT00390000015545	ENSGT00940000158971	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00940000168370	ENSGT00390000012556
Greater amberjack	MODERN SPECIES	49			rwdd (ENSSDUG00000002393)	ENSSDUG00000002416	ENSSDUG00000002423	ENSSDUG00000002432	ENSSDUG00000002460	ENSSDUG00000002489	ENSSDUG00000002505	H2AZ1 (ENSSDUG00000002527)	mllt3 (ENSSDUG00000002558)	ENSSDUG00000002589	hacd4 (ENSSDUG00000002651)	ENSSDUG00000002668	trmt10a (ENSSDUG00000002688)	spata6l (ENSSDUG00000002715) #22	slc1a1 (ENSSDUG00000002724) ##24	RAP1GDS1 (ENSSDUG00000002766)	ENSSDUG00000002856	ENSSDUG00000002881	frem1a (ENSSDUG00000002894)	ENSSDUG00000002958	PAQR9 (ENSSDUG00000002972)	ACO1 (ENSSDUG00000002984)	ENSSDUG00000003039	ENSSDUG00000003091	ENSSDUG00000003159	ENSSDUG00000003180	ARSJ (ENSSDUG00000003283)	mad2l1 (ENSSDUG00000003297)	pde5ab (ENSSDUG00000003319)
Yellowtail amberjack	MODERN SPECIES	3056			rwdd (ENSSLDG00000014523)	ENSSLDG00000014507	ENSSLDG00000014501	ENSSLDG00000014482	ENSSLDG00000014458	ENSSLDG00000014443	ENSSLDG00000014420	H2AZ1 (ENSSLDG00000014399)	mllt3 (ENSSLDG00000014370)	ENSSLDG00000014324	hacd4 (ENSSLDG00000014299)	ENSSLDG00000014288	trmt10a (ENSSLDG00000014264)	ENSSLDG00000014251 #22	slc1a1 (ENSSLDG00000014207) ##24	RAP1GDS1 (ENSSLDG00000014143)	ENSSLDG00000014092	ENSSLDG00000014071	frem1a (ENSSLDG00000014018)	ENSSLDG00000013997	PAQR9 (ENSSLDG00000013992)	ACO1 (ENSSLDG00000013952)	ANK2 (ENSSLDG00000013812)	camk2d1 (ENSSLDG00000013740)	ARSJ (ENSSLDG00000013725)	mad2l1 (ENSSLDG00000013709)	pde5ab (ENSSLDG00000013675)	ENSSLDG00000013657	zcchc4 (ENSSLDG00000013617)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000169954	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Ballan wrasse	MODERN SPECIES	202							ENSLBEG00000014743	ENSLBEG00000014717	ENSLBEG00000014690	H2AZ1 (ENSLBEG00000014657)	mllt3 (ENSLBEG00000014586)	ENSLBEG00000014253	hacd4 (ENSLBEG00000014068)	ENSLBEG00000014050	trmt10a (ENSLBEG00000014032)	ENSLBEG00000014003 #22	slc1a1 (ENSLBEG00000013947) ##24	ACO1 (ENSLBEG00000013866)	PAQR9 (ENSLBEG00000013829)	ENSLBEG00000013803	frem1a (ENSLBEG00000013674)	tspan5a (ENSLBEG00000013625)	RAP1GDS1 (ENSLBEG00000013550)	AFAP1 (ENSLBEG00000013494)	ABLIM2 (ENSLBEG00000013428)	ENSLBEG00000013399	zcchc4 (ENSLBEG00000013353)	pde5ab (ENSLBEG00000013283)	mad2l1 (ENSLBEG00000013236)	ARSJ (ENSLBEG00000013201)	camk2d1 (ENSLBEG00000012749)
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Perciformes	ANCESTRAL SPECIES	19	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000167160	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00940000168370
Lumpfish	MODERN SPECIES	9	ENSCLMG00005022897	zgc:112271 (ENSCLMG00005022898)	slx1b (ENSCLMG00005022899)	ENSCLMG00005022900	ENSCLMG00005022901	ing2 (ENSCLMG00005022902)	rwdd (ENSCLMG00005022903)	ENSCLMG00005022905	ENSCLMG00005022907	ENSCLMG00005022908	H2AZ1 (ENSCLMG00005022911)	mllt3 (ENSCLMG00005022914)	ENSCLMG00005022920	hacd4 (ENSCLMG00005022949)	trmt10a (ENSCLMG00005022953)	ENSCLMG00005022954 #22	slc1a1 (ENSCLMG00005022956) ##24	RAP1GDS1 (ENSCLMG00005022967)	ENSCLMG00005022993	ENSCLMG00005022994	frem1a (ENSCLMG00005004935)	ENSCLMG00005004941	PAQR9 (ENSCLMG00005004943)	ACO1 (ENSCLMG00005004953)	ANK2 (ENSCLMG00005005554)	ENSCLMG00005005601	ARSJ (ENSCLMG00005005666)	mad2l1 (ENSCLMG00005005688)	pde5ab (ENSCLMG00005005718)	zcchc4 (ENSCLMG00005010832)	ENSCLMG00005010835
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00950000182899.C.b	ENSGT00940000158194	ENSGT00940000177470	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00970000193685	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556
Pike perch	MODERN SPECIES	299												ENSSLUG00000018539	grpel1 (ENSSLUG00000018535)	tada2b (ENSSLUG00000018532)	trmt10a (ENSSLUG00000018527)	spata6l (ENSSLUG00000018513) #22	slc1a1 (ENSSLUG00000018240) ##24	RAP1GDS1 (ENSSLUG00000017865)	tspan5a (ENSSLUG00000017844)	ENSSLUG00000017840	frem1a (ENSSLUG00000017810)	ENSSLUG00000017794	PAQR9 (ENSSLUG00000017790)	ACO1 (ENSSLUG00000016647)
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000024259	ENSCGOG00000024262	ing2 (ENSCGOG00000024263)	ENSCGOG00000024264	ENSCGOG00000024267	rwdd (ENSCGOG00000024269)	ENSCGOG00000024272	ENSCGOG00000024288	ENSCGOG00000024289	H2AZ1 (ENSCGOG00000024291)	mllt3 (ENSCGOG00000024292)	ENSCGOG00000024305	hacd4 (ENSCGOG00000024339)	C4orf54 (ENSCGOG00000024340)	trmt10a (ENSCGOG00000024342)	ENSCGOG00000024343 #22	slc1a1 (ENSCGOG00000024346) ##24	RAP1GDS1 (ENSCGOG00000024365)	tspan5a (ENSCGOG00000024396)	ENSCGOG00000024403	frem1a (ENSCGOG00000024405)	ENSCGOG00000024411	ENSCGOG00000024412	ENSCGOG00000024413	ACO1 (ENSCGOG00000024452)	ANK2 (ENSCGOG00000024701)	ENSCGOG00000024748	ARSJ (ENSCGOG00000024752)	mad2l1 (ENSCGOG00000024753)	pde5ab (ENSCGOG00000024754)	zcchc4 (ENSCGOG00000024755)
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00940000167021	ENSGT00390000015545	ENSGT00940000158971	ENSGT00390000002231.a	ENSGT00940000166804	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00940000172047	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19																ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000155279.C.a.a	ENSGT00940000155150.a	ENSGT00940000159769.a.a	ENSGT00940000159954	ENSGT00940000153395.a	ENSGT00940000155475.h
European seabass	MODERN SPECIES	16	ENSDLAG00005020392	ENSDLAG00005033178	ENSDLAG00005020414	ENSDLAG00005029711	ENSDLAG00005020426	ENSDLAG00005020452	ENSDLAG00005020468	ENSDLAG00005020588	ENSDLAG00005020613	ENSDLAG00005020632	mllt3 (ENSDLAG00005020690)	ENSDLAG00005020745	hacd4 (ENSDLAG00005030706)	ENSDLAG00005005734	ENSDLAG00005005736	spata6l (ENSDLAG00005029816) #22	slc1a1 (ENSDLAG00005033872) ##24	ENSDLAG00005006523	tspan5a (ENSDLAG00005006709)	ENSDLAG00005006736	frem1a (ENSDLAG00005006751)	ENSDLAG00005031223	ENSDLAG00005006897	ENSDLAG00005007733	camk2d1 (ENSDLAG00005020120)	ENSDLAG00005020179	ARSJ (ENSDLAG00005020204)	mad2l1 (ENSDLAG00005028659)	pde5ab (ENSDLAG00005020232)	zcchc4 (ENSDLAG00005020651)	ENSDLAG00005020669
Large yellow croaker	MODERN SPECIES	485						fga (ENSLCRG00005017244)	ENSLCRG00005017243	ENSLCRG00005017242	npy2rl (ENSLCRG00005017240)	rbm46 (ENSLCRG00005017238)	LRAT (ENSLCRG00005017234)	ENSLCRG00005017232	ENSLCRG00005017228	ENSLCRG00005017227	glod5 (ENSLCRG00005017224)	spata6l (ENSLCRG00005017222) #22	slc1a1 (ENSLCRG00005017200) ##24	RAP1GDS1 (ENSLCRG00005016830)	TSPAN5 (ENSLCRG00005016743)	ENSLCRG00005016717	frem1a (ENSLCRG00005016616)	ENSLCRG00005016564	ENSLCRG00005016563	PAQR9 (ENSLCRG00005016562)	ACO1 (ENSLCRG00005016506)	trmt10a (ENSLCRG00005016405)	ARSJ (ENSLCRG00005016400)	ENSLCRG00005015991	ANK2 (ENSLCRG00005007850)	mad2l1 (ENSLCRG00005006748)	pde5ab (ENSLCRG00005006281)
Gilthead seabream	MODERN SPECIES	1	ing2 (ENSSAUG00010007869)	ENSSAUG00010007865	rwdd (ENSSAUG00010007863)	ENSSAUG00010007099	ENSSAUG00010007097	ENSSAUG00010007096	H2AZ1 (ENSSAUG00010007088)	ENSSAUG00010007087	ENSSAUG00010007086	ENSSAUG00010007085	FOCAD (ENSSAUG00010007062)	hacd4 (ENSSAUG00010007059)	ENSSAUG00010007058	ENSSAUG00010007057	trmt10a (ENSSAUG00010007055)	spata6l (ENSSAUG00010007052) #22	slc1a1 (ENSSAUG00010006532) ##24	RAP1GDS1 (ENSSAUG00010005544)	tspan5a (ENSSAUG00010005515)	ENSSAUG00010005512	frem1a (ENSSAUG00010005493)	ENSSAUG00010005479	ENSSAUG00010005474	ENSSAUG00010005469	ENSSAUG00010005459	ENSSAUG00010005450	ENSSAUG00010005443	PAQR9 (ENSSAUG00010005442)	ACO1 (ENSSAUG00010005355)	ENSSAUG00010024423	ANK2 (ENSSAUG00010023331)
Cod	MODERN SPECIES	8	tm4sf21b (ENSGMOG00000018395)	ENSGMOG00000018392	mpdu1b (ENSGMOG00000018375)	sox19b (ENSGMOG00000034003)	ENSGMOG00000018350	senp3b (ENSGMOG00000018338)	acox3 (ENSGMOG00000017847)	ENSGMOG00000014906	ENSGMOG00000009869	ENSGMOG00000022750	mllt3 (ENSGMOG00000022778)	ENSGMOG00000000776	hacd4 (ENSGMOG00000000843)	ENSGMOG00000026945	ENSGMOG00000000852	ENSGMOG00000027054 #22	ENSGMOG00000024515	slc1a1 (ENSGMOG00000000866) ##24	ENSGMOG00000000882	tspan5a (ENSGMOG00000006958)	ENSGMOG00000025124	frem1a (ENSGMOG00000000910)	ENSGMOG00000000968	ENSGMOG00000026866	ENSGMOG00000032873	ENSGMOG00000005480	ENSGMOG00000000915	ENSGMOG00000030156	ENSGMOG00000020024	ENSGMOG00000030297	ENSGMOG00000003710
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00390000008250	ENSGT00940000158215	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00900000140979.a.a	ENSGT00940000155903	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000165285.f	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a	ENSGT00940000160460	ENSGT00940000157235	ENSGT00940000158985.e	ENSGT00950000182924.A.b.a.b
Salmoninae	ANCESTRAL SPECIES	921														ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##24	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000155429.a.a.b
Huchen	MODERN SPECIES	3107										ENSHHUG00000029073	ENSHHUG00000029071	ENSHHUG00000029065	ENSHHUG00000029062	ENSHHUG00000029056	trmt10a (ENSHHUG00000029045)	spata6l (ENSHHUG00000029028) #22	slc1a1 (ENSHHUG00000029005) ##24	ENSHHUG00000028997	RAP1GDS1 (ENSHHUG00000028291)
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##24	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.v	ENSGT00950000182866.D.d.a.c.a.i.b.a.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##24	ENSGT00940000154641.B.b.l	ENSGT00390000014293.a.c	ENSGT00940000161376	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00940000157122.b.a.f
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000097570	cj011 (ENSSSAG00000063292)	ENSSSAG00000086352	ENSSSAG00000063203	ENSSSAG00000062983	ENSSSAG00000062965	ENSSSAG00000057685	ENSSSAG00000057570	PPP3CA (ENSSSAG00000040278)	Ddit4l (ENSSSAG00000039999)	H2AZ1 (ENSSSAG00000039934)	ENSSSAG00000039827	ENSSSAG00000110195	ENSSSAG00000090565	ENSSSAG00000120143	spata6l (ENSSSAG00000039413) #22	ENSSSAG00000085280	slc1a1 (ENSSSAG00000037401) ##24	ENSSSAG00000036477	ENSSSAG00000033777	ENSSSAG00000030907	ENSSSAG00000006377	fa29a (ENSSSAG00000005878)	ENSSSAG00000113997	ENSSSAG00000110280	ENSSSAG00000005822	ENSSSAG00000005799	ENSSSAG00000005787	ENSSSAG00000108693	coro1b (ENSSSAG00000005518)	ENSSSAG00000005493
River trout	MODERN SPECIES	38	ENSSTUG00000040588	ACO1 (ENSSTUG00000040449)	plaa (ENSSTUG00000040217)	zdhhc21 (ENSSTUG00000040206)	ENSSTUG00000040201	ENSSTUG00000040188	nxpe3 (ENSSTUG00000040174)	PPP3CA (ENSSTUG00000035269)	DDIT4L (ENSSTUG00000035157)	H2AZ1 (ENSSTUG00000035152)	mllt3 (ENSSTUG00000035120)	ENSSTUG00000035116	ENSSTUG00000035076	ENSSTUG00000035066	trmt10a (ENSSTUG00000034961)	spata6l (ENSSTUG00000034943) #22	slc1a1 (ENSSTUG00000034771) ##24	ENSSTUG00000034727	RAP1GDS1 (ENSSTUG00000034176)	tspan5a (ENSSTUG00000034007)	ENSSTUG00000032676	haus6 (ENSSTUG00000032605)	ENSSTUG00000032597	plin2 (ENSSTUG00000032583)	ENSSTUG00000032555	larp7 (ENSSTUG00000032520)	ENSSTUG00000032502	ENSSTUG00000032495	coro1b (ENSSTUG00000032447)	dtx4a (ENSSTUG00000032346)	msantd1 (ENSSTUG00000032329)
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##24	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT01030000236063	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000045951	ENSOMYG00000045963	ENSOMYG00000026017	ENSOMYG00000026400	ENSOMYG00000026434	ENSOMYG00000064361	PPP3CA (ENSOMYG00000026946)	ENSOMYG00000028176	ENSOMYG00000028197	H2AZ1 (ENSOMYG00000028216)	ENSOMYG00000028306	ENSOMYG00000028405	ENSOMYG00000028418	ENSOMYG00000028435	ENSOMYG00000028453	ENSOMYG00000051473 #22	ENSOMYG00000028593 ##24	ENSOMYG00000028779	ENSOMYG00000029095	ENSOMYG00000029116	ENSOMYG00000058703	ENSOMYG00000029468	ENSOMYG00000029698	ENSOMYG00000029728	ENSOMYG00000029762	ENSOMYG00000029773	ENSOMYG00000029800	ENSOMYG00000029812	ENSOMYG00000029848	coro1b (ENSOMYG00000029865)	ENSOMYG00000029912
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00940000155800.b	ENSGT00940000165054.B	ENSGT00940000153289.a.a.b.c	ENSGT00940000157772.c	ENSGT00550000074944.k	ENSGT00940000158006.a	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000156306.d	ENSGT00530000063652.a.a.b	ENSGT00900000140979.a.a.n.a	ENSGT00940000155903.g.b	ENSGT00730000111645.a.d	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00940000165285.f	ENSGT00530000063169.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.h ##24	ENSGT00390000014293.a.c	ENSGT00940000154641.B.b.l	ENSGT00940000155429.a.a.b	ENSGT00940000158215.p	ENSGT00390000008250.h	ENSGT01090000260029.a.a.a.a.a.a.b.b.b.b.a	ENSGT00950000182920.b.a.b.a.a.h	ENSGT00390000007252.c.f	ENSGT00940000154949.b.hb.a	ENSGT00940000165048.a	ENSGT00390000018426.n	ENSGT00940000159031.y.b	ENSGT00530000067688	ENSGT00940000157122.b.a.f
Coho salmon	MODERN SPECIES	29	ENSOKIG00005003493	ACER2 (ENSOKIG00005003511)	ENSOKIG00005003521	ACO1 (ENSOKIG00005003541)	plaa (ENSOKIG00005003581)	ZDHHC21 (ENSOKIG00005003629)	NFIB (ENSOKIG00005003656)	PPP3CA (ENSOKIG00005003983)	DDIT4L (ENSOKIG00005008111)	ENSOKIG00005008127	MLLT3 (ENSOKIG00005008168)	ENSOKIG00005008202	ENSOKIG00005008214	ENSOKIG00005008227	TRMT10A (ENSOKIG00005008243)	spata6l (ENSOKIG00005008255) #22	slc1a1 (ENSOKIG00005008275) ##24	RAP1GDS1 (ENSOKIG00005008342)	ENSOKIG00005009165	tspan5a (ENSOKIG00005009185)	DENND4C (ENSOKIG00005009314)	ENSOKIG00005009610	ENSOKIG00005009639	ENSOKIG00005009645	ENSOKIG00005009655	LARP7 (ENSOKIG00005009666)	ENSOKIG00005009678	ENSOKIG00005009684	coro1b (ENSOKIG00005009692)	ENSOKIG00005009713	dtx4a (ENSOKIG00005009730)
Chinook salmon	MODERN SPECIES	6	ENSOTSG00005047787	ACER2 (ENSOTSG00005047788)	ENSOTSG00005047789	ACO1 (ENSOTSG00005047791)	plaa (ENSOTSG00005047796)	zdhhc21 (ENSOTSG00005047798)	NFIB (ENSOTSG00005047799)	PPP3CA (ENSOTSG00005047806)	DDIT4L (ENSOTSG00005047914)	H2AZ1 (ENSOTSG00005047915)	mllt3 (ENSOTSG00005047917)	ENSOTSG00005047918	ENSOTSG00005047919	ENSOTSG00005047920	trmt10a (ENSOTSG00005047921)	spata6l (ENSOTSG00005047922) #22	slc1a1 (ENSOTSG00005047923) ##24	RAP1GDS1 (ENSOTSG00005047924)	ENSOTSG00005047925	tspan5a (ENSOTSG00005047926)	DENND4C (ENSOTSG00005047927)	ENSOTSG00005047928	haus6 (ENSOTSG00005047929)	ENSOTSG00005047932	plin2 (ENSOTSG00005047933)	ENSOTSG00005047935	larp7 (ENSOTSG00005047936)	ENSOTSG00005047937	ENSOTSG00005047938	coro1b (ENSOTSG00005047939)	dtx4a (ENSOTSG00005047940)
Northern pike	MODERN SPECIES	23	plaa (ENSELUG00000015555)	zdhhc21 (ENSELUG00000015599)	NFIB (ENSELUG00000015696)	BANK1 (ENSELUG00000015766)	PPP3CA (ENSELUG00000015889)	DDIT4L (ENSELUG00000015919)	H2AZ1 (ENSELUG00000015934)	mllt3 (ENSELUG00000016011)	ENSELUG00000016097	HACD4 (ENSELUG00000016126)	C4orf54 (ENSELUG00000016148)	ENSELUG00000016170	ENSELUG00000016183	ENSELUG00000031565	trmt10a (ENSELUG00000016190)	spata6l (ENSELUG00000016212) #22	slc1a1 (ENSELUG00000016268) ##24	RAP1GDS1 (ENSELUG00000016426)	tspan5a (ENSELUG00000016547)	ENSELUG00000016572	frem1a (ENSELUG00000016724)	ACO1 (ENSELUG00000016812)	ENSELUG00000016841	ACER2 (ENSELUG00000016895)	ccdc149a (ENSELUG00000016931)	dhx15 (ENSELUG00000016984)	PPARGC1A (ENSELUG00000017027)	gba3 (ENSELUG00000017046)	ADGRA3 (ENSELUG00000000643)	KCNIP4 (ENSELUG00000017200)	sec24d (ENSELUG00000017252)
Otomorpha	ANCESTRAL SPECIES	145						ENSGT00940000155658	ENSGT00730000112044	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260265	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Otophysi	ANCESTRAL SPECIES	50	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049.b	ENSGT00950000183153.c.a.q	ENSGT00940000163587.a.b.b.e.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Characiphysae	ANCESTRAL SPECIES	19	ENSGT00940000160621	ENSGT00940000177336	ENSGT00940000156850.a.a	ENSGT00390000014725.r.a	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00390000009210	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Channel catfish	MODERN SPECIES	26	ENSIPUG00000006040	cideb (ENSIPUG00000006003)	homezb (ENSIPUG00000005992)	ENSIPUG00000005984	ENSIPUG00000005972	ENSIPUG00000005938	ENSIPUG00000005925	syt4 (ENSIPUG00000005912)	ENSIPUG00000005896	ENSIPUG00000005889	ENSIPUG00000005838	ENSIPUG00000005819	ENSIPUG00000005810	ENSIPUG00000005761	gabarap (ENSIPUG00000005735)	ENSIPUG00000005729 #22	slc1a1 (ENSIPUG00000005686) ##24	rap1gds1 (ENSIPUG00000005613)	TSPAN5 (ENSIPUG00000005533)	ENSIPUG00000005514	frem1 (ENSIPUG00000005425)	ENSIPUG00000005398	elp5 (ENSIPUG00000005381)	phf23b (ENSIPUG00000005365)	ENSIPUG00000005361	plscr3b (ENSIPUG00000005282)	tnk1 (ENSIPUG00000005265)	ENSIPUG00000005262	senp3b (ENSIPUG00000005243)	eif4a1a (ENSIPUG00000005117)	sox19a (ENSIPUG00000005096)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT01030000234601.s	ENSGT00940000173396	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a
Characoidei	ANCESTRAL SPECIES	9	ENSGT00950000182923.B.b	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01030000234590.B.a.a.e.b	ENSGT00940000163587.a.b.b.f	ENSGT00940000153916.A.b	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.h	ENSGT00940000166308	ENSGT00940000165351.e.a	ENSGT00530000063882.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT01030000234601.s	ENSGT00940000173396	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a
Red-bellied piranha	MODERN SPECIES	224															gabarapb (ENSPNAG00000011021)	spata6l (ENSPNAG00000011014) #22	slc1a1 (ENSPNAG00000010984) ##24	RAP1GDS1 (ENSPNAG00000001461)	tspan5a (ENSPNAG00000001444)	ENSPNAG00000010756	frem1a (ENSPNAG00000010747)	USP53 (ENSPNAG00000010692)	myoz2a (ENSPNAG00000001423)	SYNPO2 (ENSPNAG00000001422)	sec24d (ENSPNAG00000010613)	KCNIP4 (ENSPNAG00000010598)	ENSPNAG00000001405	ADGRA3 (ENSPNAG00000001403)	gba3 (ENSPNAG00000010437)	PPARGC1A (ENSPNAG00000010393)	dhx15 (ENSPNAG00000010321)
Mexicana tetra	MODERN SPECIES	7	ap1s1 (ENSAMXG00000011750)	serpine1 (ENSAMXG00000011753)	zgc:77439 (ENSAMXG00000011762)	ENSAMXG00000035360	ENSAMXG00000030988	mpdu1b (ENSAMXG00000040864)	sox19b (ENSAMXG00000035936)	eif4a1a (ENSAMXG00000030251)	senp3b (ENSAMXG00000011802)	tnk1 (ENSAMXG00000011806)	plscr3b (ENSAMXG00000039385)	phf23b (ENSAMXG00000029079)	elp5 (ENSAMXG00000011835)	ctdnep1b (ENSAMXG00000042194)	gabarapb (ENSAMXG00000039481)	spata6l (ENSAMXG00000013847) #22	slc1a1 (ENSAMXG00000043975) ##24	ENSAMXG00000032033	RAP1GDS1 (ENSAMXG00000013835)	tspan5a (ENSAMXG00000040397)	ENSAMXG00000002335	frem1a (ENSAMXG00000002343)	USP53 (ENSAMXG00000002366)	myoz2a (ENSAMXG00000031405)	ENSAMXG00000030857	sec24d (ENSAMXG00000002393)	KCNIP4 (ENSAMXG00000002428)	ENSAMXG00000030994	ADGRA3 (ENSAMXG00000002446)	gba3 (ENSAMXG00000002452)	PPARGC1A (ENSAMXG00000002461)
Electric eel	MODERN SPECIES	244	trappc14 (ENSEEEG00000011821)	gal3st4 (ENSEEEG00000011822)	her8a (ENSEEEG00000011824)	ENSEEEG00000011825	ENSEEEG00000011827	mpdu1b (ENSEEEG00000011830)	sox19b (ENSEEEG00000011838)	eif4a1a (ENSEEEG00000011870)	senp3b (ENSEEEG00000012979)	tnk1 (ENSEEEG00000012986)	plscr3b (ENSEEEG00000012989)	phf23b (ENSEEEG00000012994)	elp5 (ENSEEEG00000012995)	ctdnep1b (ENSEEEG00000012998)	gabarapb (ENSEEEG00000013009)	ENSEEEG00000013014 #22	slc1a1 (ENSEEEG00000013038) ##24	RAP1GDS1 (ENSEEEG00000013291)	tspan5a (ENSEEEG00000013729)
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00940000157410	ENSGT00550000074994	ENSGT00950000183102.A.b.b	ENSGT00940000159841	ENSGT00950000182838.B.a.a	ENSGT00940000159421	ENSGT00390000005939.b	ENSGT00390000009210	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049.b	ENSGT00390000003738.a.a	ENSGT00940000159816	ENSGT00940000160688	ENSGT00950000183153.c.a.r	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Cyprininae	ANCESTRAL SPECIES	188									ENSGT00950000182838.B.a.a.e	ENSGT00940000159421.g	ENSGT00390000005939.b.j	ENSGT00390000009210	ENSGT01040000240503.B.j	ENSGT00940000157496	ENSGT00940000166995.g	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.b ##24	ENSGT00390000014293.a.e.a.b	ENSGT00940000161376	ENSGT00940000155429.a.a.c.b	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c.d	ENSGT00940000156337.c.c	ENSGT00950000183027.b.b.h	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000182924.A.b.a.b.d	ENSGT00940000158985.r.b.b	ENSGT00940000157235.j	ENSGT00940000160460.b	ENSGT00950000183137.b.a.g
Goldfish	MODERN SPECIES	47	zgc:162592 (ENSCARG00000050057)	cyb5b (ENSCARG00000050050)	dhx38 (ENSCARG00000049334)	ENSCARG00000049051	zfhx3b (ENSCARG00000048983)	ENSCARG00000048970	ENSCARG00000068836	ENSCARG00000068744	ENSCARG00000068443	PHLPP2 (ENSCARG00000068350)	ap1g1 (ENSCARG00000068151)	ZNF821 (ENSCARG00000068122)	ATXN1L (ENSCARG00000068117)	ctdnep1b (ENSCARG00000068102)	GABARAP (ENSCARG00000068082)	spata6l (ENSCARG00000068068) #22	slc1a1 (ENSCARG00000068017) ##24	RAP1GDS1 (ENSCARG00000067961)	ENSCARG00000067886	ENSCARG00000067878	frem1a (ENSCARG00000067826)	USP53 (ENSCARG00000067800)	MYOZ2 (ENSCARG00000067791)	SYNPO2 (ENSCARG00000067787)	sec24d (ENSCARG00000064536)	KCNIP4 (ENSCARG00000064167)	ADGRA3 (ENSCARG00000063837)	gba3 (ENSCARG00000063771)	ENSCARG00000063752	PPARGC1A (ENSCARG00000063351)	dhx15 (ENSCARG00000063047)
Cyprininae_a	ANCESTRAL SPECIES	141									ENSGT00950000182838.B.a.a.e	ENSGT00940000159421.g	ENSGT00390000005939.b.j	ENSGT00390000009210	ENSGT01040000240503.B.j	ENSGT00940000157496	ENSGT00940000166995.g	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b.b ##24	ENSGT00390000014293.a.e.a.b	ENSGT00940000155429.a.a.c.b	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c.d	ENSGT00940000156337.c.c	ENSGT00950000183027.b.b.h	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000182924.A.b.a.b.d	ENSGT00940000158985.r.b.b	ENSGT00940000157235.j	ENSGT00940000160460.b	ENSGT00950000183137.b.a.g	ENSGT00940000155800.a.b.o
Common carp reference	MODERN SPECIES		zgc:162592 (ENSCCRG00000073947)	cyb5b (ENSCCRG00000057704)	dhx38 (ENSCCRG00000018599)	ENSCCRG00000071991	zfhx3b (ENSCCRG00000062080)	ENSCCRG00000077952	ENSCCRG00000043262	ENSCCRG00000080354	marveld3 (ENSCCRG00000081318)	ENSCCRG00000050379	ap1g1 (ENSCCRG00000037560)	ENSCCRG00000046770	ENSCCRG00000068681	ctdnep1b (ENSCCRG00000054342)	ENSCCRG00000060838	spata6l (ENSCCRG00000047563) #22	slc1a1 (ENSCCRG00000047608) ##24	ENSCCRG00000042149	tspan5a (ENSCCRG00000065306)	ENSCCRG00000069654	frem1a (ENSCCRG00000063078)	USP53 (ENSCCRG00000036700)	MYOZ2 (ENSCCRG00000078569)	SYNPO2 (ENSCCRG00000068614)	sec24d (ENSCCRG00000061858)	KCNIP4 (ENSCCRG00000064572)	ADGRA3 (ENSCCRG00000024750)	gba3 (ENSCCRG00000011902)	PPARGC1A (ENSCCRG00000020738)	dhx15 (ENSCCRG00000072441)	sod3a (ENSCCRG00000077543)
Golden-line barbel	MODERN SPECIES	461	ENSSGRG00000027706	dhx38 (ENSSGRG00000027700)	zfhx3b (ENSSGRG00000027695)	ENSSGRG00000027693	CRISPLD2 (ENSSGRG00000027669)	ENSSGRG00000027514	PHLPP2 (ENSSGRG00000027479)	ap1g1 (ENSSGRG00000025255)	ZNF821 (ENSSGRG00000025183)	ATXN1L (ENSSGRG00000025182)	ENSSGRG00000025181	elp5 (ENSSGRG00000025179)	ctdnep1b (ENSSGRG00000025133)	ctdnep1b (ENSSGRG00000025131)	gabarapb (ENSSGRG00000025116)	spata6l (ENSSGRG00000025115) #22	slc1a1 (ENSSGRG00000025087) ##24	RAP1GDS1 (ENSSGRG00000024379)	ENSSGRG00000024363	ENSSGRG00000024362	USP53 (ENSSGRG00000024360)	MYOZ2 (ENSSGRG00000024358)	ENSSGRG00000024357	sec24d (ENSSGRG00000023108)	ENSSGRG00000023100
Zebrafish	MODERN SPECIES	22	ENSDARG00000098937	zfhx3b (ENSDARG00000103057)	ENSDARG00000113074	ENSDARG00000104742	ENSDARG00000110427	CRISPLD2 (ENSDARG00000088595)	USP10 (ENSDARG00000103422)	marveld3 (ENSDARG00000099654)	phlpp2 (ENSDARG00000090255)	ap1g1 (ENSDARG00000102394)	ZNF821 (ENSDARG00000106989)	ATXN1L (ENSDARG00000086977)	elp5 (ENSDARG00000067918)	ctdnep1b (ENSDARG00000035781)	gabarapb (ENSDARG00000052082)	spata6l (ENSDARG00000004874) #22	slc1a1 (ENSDARG00000020212) ##24	RAP1GDS1 (ENSDARG00000073741)	tspan5a (ENSDARG00000086033)	ENSDARG00000105048	frem1a (ENSDARG00000069473)	USP53 (ENSDARG00000078615)	myoz2a (ENSDARG00000012311)	ENSDARG00000099032	sec24d (ENSDARG00000045946)	KCNIP4 (ENSDARG00000088100)	ADGRA3 (ENSDARG00000073673)	gba3 (ENSDARG00000031150)	PPARGC1A (ENSDARG00000067829)	dhx15 (ENSDARG00000015392)	sod3a (ENSDARG00000070168)
Clupeiformes	ANCESTRAL SPECIES	226						ENSGT00940000155658	ENSGT00730000112044	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260265	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00730000111645.a	ENSGT00530000063169.a	ENSGT00530000063821.b.b #22	ENSGT00940000155397.a.b ##24	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000156337.c	ENSGT00950000183027.b.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00940000158985	ENSGT00940000157235	ENSGT00940000160460	ENSGT00950000183137.b.a	ENSGT00940000155800.a.b	ENSGT00940000162224
Atlantic herring	MODERN SPECIES	9	NRXN2 (ENSCHAG00000003236)	ENSCHAG00000006527	ENSCHAG00000006540	ENSCHAG00000006560	ENSCHAG00000006594	ENSCHAG00000006621	ENSCHAG00000006663	ENSCHAG00000006671	kirrel1a (ENSCHAG00000006715)	ndufs2 (ENSCHAG00000007869)	hacd4 (ENSCHAG00000010111)	ENSCHAG00000010170	mllt3 (ENSCHAG00000011337)	ENSCHAG00000011371	ENSCHAG00000011377	ENSCHAG00000011404 #22	slc1a1 (ENSCHAG00000011423) ##24	ENSCHAG00000011744	ENSCHAG00000011774	ENSCHAG00000011789	ENSCHAG00000011803	ENSCHAG00000011821	ENSCHAG00000011840	ENSCHAG00000011848	ENSCHAG00000011863	ADRA2C (ENSCHAG00000011932)	DOK7 (ENSCHAG00000012020)	HGFAC (ENSCHAG00000012034)	ENSCHAG00000012261	msantd1 (ENSCHAG00000012445)	dtx4a (ENSCHAG00000012449)
Denticle herring	MODERN SPECIES		ENSDCDG00000029756	ENSDCDG00000029754	ACO1 (ENSDCDG00000029709)	sepsecs (ENSDCDG00000029683)	lgi2a (ENSDCDG00000029679)	dock11 (ENSDCDG00000023096)	ENSDCDG00000022950	kirrel1a (ENSDCDG00000022254)	ndufs2 (ENSDCDG00000021552)	fcer1g (ENSDCDG00000021546)	hacd4 (ENSDCDG00000021545)	ENSDCDG00000020315	mllt3 (ENSDCDG00000020307)	C4orf54 (ENSDCDG00000020306)	trmt10a (ENSDCDG00000020305)	spata6l (ENSDCDG00000020304) #22	slc1a1 (ENSDCDG00000018776) ##24	RAP1GDS1 (ENSDCDG00000018603)	tspan5a (ENSDCDG00000018556)	ENSDCDG00000018547	frem1a (ENSDCDG00000018530)	ENSDCDG00000018519	SYNPO2 (ENSDCDG00000018518)	USP53 (ENSDCDG00000018506)	ENSDCDG00000018501	MYOZ2 (ENSDCDG00000018492)	SYNPO2 (ENSDCDG00000018487)	sec24d (ENSDCDG00000011172)	KCNIP4 (ENSDCDG00000010857)	gba3 (ENSDCDG00000010832)	ADGRA3 (ENSDCDG00000010760)
Spotted gar	MODERN SPECIES	670	CDKN2B (ENSLOCG00000012588)	CXXC4 (ENSLOCG00000012594)	TET2 (ENSLOCG00000012598)	ppa2 (ENSLOCG00000012607)	ARHGEF38 (ENSLOCG00000012616)	ints12 (ENSLOCG00000012622)	gstcd (ENSLOCG00000012628)	npnta (ENSLOCG00000012639)	tbck (ENSLOCG00000012644)	sgms2b (ENSLOCG00000012660)	papss1 (ENSLOCG00000012667)	dkk2 (ENSLOCG00000012675)	GIMD1 (ENSLOCG00000012679)	aimp1a (ENSLOCG00000012682)	ENSLOCG00000012690	spata6l (ENSLOCG00000012696) #22	slc1a1 (ENSLOCG00000012701) #24	slc1a1 (ENSLOCG00000012708) #24	RAP1GDS1 (ENSLOCG00000012715)	tspan5b (ENSLOCG00000012728)	trmt10b (ENSLOCG00000012735)	ENSLOCG00000012739	intu (ENSLOCG00000012742)	ino80b (ENSLOCG00000012755)	AADAT (ENSLOCG00000012761)	mfap3l (ENSLOCG00000012768)	ENSLOCG00000012772	DNAH6 (ENSLOCG00000012784)	ENSLOCG00000012794	chrnb3b (ENSLOCG00000012803)	chrna6 (ENSLOCG00000012810)
Reedfish	MODERN SPECIES	15	ENSECRG00000010260	fam241a (ENSECRG00000010273)	pitx2 (ENSECRG00000010290)	enpep (ENSECRG00000010349)	elovl6 (ENSECRG00000010538)	egf (ENSECRG00000010608)	lrit3a (ENSECRG00000010702)	rrh (ENSECRG00000010709)	trmt10a (ENSECRG00000010724)	mttp (ENSECRG00000010743)	ENSECRG00000010762	dapp1 (ENSECRG00000010775)	lamtor3 (ENSECRG00000010789)	gar1 (ENSECRG00000010795)	ENSECRG00000010802	ENSECRG00000010809 #22	slc1a1 (ENSECRG00000010813) #24	RAP1GDS1 (ENSECRG00000010846)	tspan5b (ENSECRG00000010899)	eif4ea (ENSECRG00000010918)	metap1 (ENSECRG00000010934)	adh5 (ENSECRG00000010976)	ENSECRG00000011063	ENSECRG00000011070	ENSECRG00000011082	ENSECRG00000011096	plaa (ENSECRG00000011100)	zdhhc21 (ENSECRG00000011106)	NFIB (ENSECRG00000011118)	MPDZ (ENSECRG00000011134)	ENSECRG00000011149
Elephant shark	MODERN SPECIES	1509	bnc2 (ENSCMIG00000007918)	CNTLN (ENSCMIG00000007920)	ENSCMIG00000007923	ENSCMIG00000007934	ENSCMIG00000007945	ADAMTSL1 (ENSCMIG00000007951)	ENSCMIG00000007955	ENSCMIG00000007958	ENSCMIG00000007960	ENSCMIG00000007962	plin2 (ENSCMIG00000007964)	elavl2 (ENSCMIG00000007974)	CAAP1 (ENSCMIG00000007989)	plaa (ENSCMIG00000007998)	ENSCMIG00000008011	ENSCMIG00000008013 #22	ENSCMIG00000008018 #24	ENSCMIG00000008032	GLIS3 (ENSCMIG00000008035) #25	rfx3 (ENSCMIG00000008108) #26	ENSCMIG00000008233	pum3 (ENSCMIG00000008286) #27	KCNV2 (ENSCMIG00000008387) #28	vldlr (ENSCMIG00000008511) #29	ENSCMIG00000009053 #29	ENSCMIG00000009311 #30	ENSCMIG00000009379	dmrt2a (ENSCMIG00000009380) #32	dmrt3a (ENSCMIG00000009382) #33	DMRT1 (ENSCMIG00000009384)	KANK1 (ENSCMIG00000009393) #35
Ciona	ANCESTRAL SPECIES																	ENSGT00530000063821.b.b #22
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000018954	ENSCING00000013305	ENSCING00000013306	ENSCING00000018913	ENSCING00000013299	ENSCING00000021983	ENSCING00000023885	ENSCING00000022591	ENSCING00000023392	ENSCING00000006763	ENSCING00000020947	ENSCING00000006761	ENSCING00000015555	ENSCING00000009956	ENSCING00000006759	ENSCING00000023621 #22	ENSCING00000023870	ENSCING00000022076	ENSCING00000013296	ENSCING00000013297	ENSCING00000009957	ENSCING00000022311	ENSCING00000019021	ENSCING00000022195	ENSCING00000006771	ENSCING00000020707	ENSCING00000020373	ENSCING00000021853	ENSCING00000006791	ENSCING00000013291	ENSCING00000006789
Chordata	ANCESTRAL SPECIES																	ENSGT00530000063821.b.a ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00530000063821.b.a ##22
Gnathostomata	ANCESTRAL SPECIES	55														ENSGT00940000157399	ENSGT00940000155042	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000165232	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000155136	ENSGT00940000157668	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00940000165098	ENSGT00940000171673	ENSGT00940000159251	ENSGT00390000017123.a
Euteleostomi	ANCESTRAL SPECIES	48	ENSGT00940000155026	ENSGT00940000154690	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.a	ENSGT00940000155042.a.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000165232	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155136	ENSGT00940000157668	ENSGT00950000182916.a.b.a.a.a.a	ENSGT00940000165098	ENSGT00940000171673	ENSGT00940000159251
Sarcopterygii	ANCESTRAL SPECIES	100	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00390000006387	ENSGT00950000182915.b.b.a.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000165232	ENSGT00940000162805	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Tetrapoda	ANCESTRAL SPECIES	8	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Amniota	ANCESTRAL SPECIES	9	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Sauria	ANCESTRAL SPECIES	7	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441	ENSGT00940000161527.c	ENSGT00390000011196	ENSGT00390000016446
Archelosauria	ANCESTRAL SPECIES	9	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Archosauria	ANCESTRAL SPECIES	11	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Aves	ANCESTRAL SPECIES	7	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Neognathae	ANCESTRAL SPECIES	8	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Galloanserae	ANCESTRAL SPECIES	8	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Anatidae	ANCESTRAL SPECIES	5	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Duck	MODERN SPECIES	26	TXNDC12 (ENSAPLG00000022816)	RAB3B (ENSAPLG00000004148)	ENSAPLG00000002870	OSBPL9 (ENSAPLG00000001003)	EPS15 (ENSAPLG00000004292)	TTC39A (ENSAPLG00000003729)	RNF11 (ENSAPLG00000022113)	CDKN2C (ENSAPLG00000027339)	FAF1 (ENSAPLG00000002930)	DMRTA2 (ENSAPLG00000029740)	ELAVL4 (ENSAPLG00000030449)	ENSAPLG00000023647	ENSAPLG00000018496	BEND5 (ENSAPLG00000008052)	ENSAPLG00000007966	SPATA6 (ENSAPLG00000007793) ##22	ENSAPLG00000020726	SLC5A9 (ENSAPLG00000007144)	ENSAPLG00000022301	TRABD2B (ENSAPLG00000007124)	ENSAPLG00000028912	ENSAPLG00000029939	STIL (ENSAPLG00000010138)	ENSAPLG00000009571	EFCAB14 (ENSAPLG00000026113)	ATPAF1 (ENSAPLG00000009308)	MOB3C (ENSAPLG00000009181)	ENSAPLG00000008479	TMEM275 (ENSAPLG00000018210)	DMBX1 (ENSAPLG00000008404)	FAAH (ENSAPLG00000007898)
Pink-footed goose	MODERN SPECIES	1	BTF3L4 (ENSABRG00000008061)	TXNDC12 (ENSABRG00000008071)	RAB3B (ENSABRG00000008096)	ENSABRG00000008367	OSBPL9 (ENSABRG00000011975)	EPS15 (ENSABRG00000014091)	TTC39A (ENSABRG00000015248)	RNF11 (ENSABRG00000015288)	CDKN2C (ENSABRG00000015292)	FAF1 (ENSABRG00000015320)	DMRTA2 (ENSABRG00000015596)	ELAVL4 (ENSABRG00000015613)	AGBL4 (ENSABRG00000015624)	BEND5 (ENSABRG00000015631)	ENSABRG00000015638	SPATA6 (ENSABRG00000015644) ##22	SLC5A9 (ENSABRG00000015750)	TRABD2B (ENSABRG00000016692)	ENSABRG00000016705	ENSABRG00000016710	STIL (ENSABRG00000016714)	TAL1 (ENSABRG00000016716)	PDZK1IP1 (ENSABRG00000016718)	ENSABRG00000016720	ENSABRG00000016721	EFCAB14 (ENSABRG00000016757)	ATPAF1 (ENSABRG00000016766)	MOB3C (ENSABRG00000016771)	ENSABRG00000016779	TMEM275 (ENSABRG00000016800)	DMBX1 (ENSABRG00000016803)
Phasianidae	ANCESTRAL SPECIES	7	ENSGT00940000154290.a	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690.hc.b	ENSGT00940000155751	ENSGT00950000182917.a.b.a.b	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Japanese quail	MODERN SPECIES	26	BTF3L4 (ENSCJPG00005011891)	TXNDC12 (ENSCJPG00005011890)	RAB3B (ENSCJPG00005011888)	NRDC (ENSCJPG00005011887)	OSBPL9 (ENSCJPG00005011698)	EPS15 (ENSCJPG00005010459)	TTC39A (ENSCJPG00005010447)	RNF11 (ENSCJPG00005010446)	CDKN2C (ENSCJPG00005010445)	FAF1 (ENSCJPG00005010278)	DMRTA2 (ENSCJPG00005010277)	ELAVL4 (ENSCJPG00005010275)	BEND5 (ENSCJPG00005010274)	AGBL4 (ENSCJPG00005010272)	ENSCJPG00005010271	SPATA6 (ENSCJPG00005010270) ##22	SLC5A9 (ENSCJPG00005010085)	TRABD2B (ENSCJPG00005010082)	FOXD2 (ENSCJPG00005010080)	ENSCJPG00005010079	ENSCJPG00005010078	STIL (ENSCJPG00005010077)	TAL1 (ENSCJPG00005010076)	ENSCJPG00005010075	ENSCJPG00005010074	EFCAB14 (ENSCJPG00005010073)	ATPAF1 (ENSCJPG00005010072)	MOB3C (ENSCJPG00005010071)	ENSCJPG00005010070	TMEM275 (ENSCJPG00005010069)	DMBX1 (ENSCJPG00005010066)
Phasianidae_b	ANCESTRAL SPECIES	7	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690.hc.b	ENSGT00940000154690.gc	ENSGT00940000155751	ENSGT00950000182917.a.b.a.b	ENSGT00940000163721	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00940000161237
Chicken	MODERN SPECIES	37	RAB3B (ENSGALG00010024642)	OSBPL9 (ENSGALG00010027084)	NRDC (ENSGALG00010024623)	ENSGALG00010024599	EPS15 (ENSGALG00010024596)	TTC39A (ENSGALG00010024588)	RNF11 (ENSGALG00010024551)	CDKN2C (ENSGALG00010024533)	FAF1 (ENSGALG00010024514)	DMRTA2 (ENSGALG00010022784)	ELAVL4 (ENSGALG00010022760)	ENSGALG00010024774	BEND5 (ENSGALG00010024659)	AGBL4 (ENSGALG00010027088)	ENSGALG00010024768	SPATA6 (ENSGALG00010024758) ##22	SLC5A9 (ENSGALG00010024728)	TRABD2B (ENSGALG00010024695)	ENSGALG00010026936	CMPK1 (ENSGALG00010024686)	STIL (ENSGALG00010024669)	TAL1 (ENSGALG00010022991)	PDZK1IP1 (ENSGALG00010022948)	CYP4B7 (ENSGALG00010022917)	EFCAB14 (ENSGALG00010022874)	ATPAF1 (ENSGALG00010022867)	MOB3C (ENSGALG00010022860)	MKNK1 (ENSGALG00010023356)	DMBX1 (ENSGALG00010022675)	VDHAP (ENSGALG00010027076)	ENSGALG00010022999
Turkey	DUPLICATION
Turkey	MODERN SPECIES	1	LRRC41 (ENSMGAG00000010654)	ENSMGAG00000010684	ENSMGAG00000010681	ENSMGAG00000010718	ENSMGAG00000010722	ENSMGAG00000010730	ENSMGAG00000010732	ENSMGAG00000010747	ENSMGAG00000010784	ENSMGAG00000010752	ENSMGAG00000010823	ENSMGAG00000010795	ENSMGAG00000010814	ENSMGAG00000010792	TRABD2B (ENSMGAG00000017913)	ENSMGAG00000021374 ##22	ENSMGAG00000010829	ENSMGAG00000010855 ##22	ENSMGAG00000010874	ENSMGAG00000019230	ELAVL4 (ENSMGAG00000010928)	ENSMGAG00000010948	ENSMGAG00000022627	ENSMGAG00000010982	ENSMGAG00000010980	ENSMGAG00000022271	EPS15 (ENSMGAG00000010996)	ENSMGAG00000019881	ENSMGAG00000011057	ENSMGAG00000011030	RAB3B (ENSMGAG00000018796)
Turkey	MODERN SPECIES	1	ENSMGAG00000010681	ENSMGAG00000010718	ENSMGAG00000010722	ENSMGAG00000010730	ENSMGAG00000010732	ENSMGAG00000010747	ENSMGAG00000010784	ENSMGAG00000010752	ENSMGAG00000010823	ENSMGAG00000010795	ENSMGAG00000010814	ENSMGAG00000010792	TRABD2B (ENSMGAG00000017913)	ENSMGAG00000021374 ##22	ENSMGAG00000010829	ENSMGAG00000010855 ##22	ENSMGAG00000010874	ENSMGAG00000019230	ELAVL4 (ENSMGAG00000010928)	ENSMGAG00000010948	ENSMGAG00000022627	ENSMGAG00000010982	ENSMGAG00000010980	ENSMGAG00000022271	EPS15 (ENSMGAG00000010996)	ENSMGAG00000019881	ENSMGAG00000011057	ENSMGAG00000011030	RAB3B (ENSMGAG00000018796)	ENSMGAG00000011090	ENSMGAG00000011102
Neognathae_b	ANCESTRAL SPECIES	10	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Passeriformes	ANCESTRAL SPECIES	8	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Passeriformes_d	ANCESTRAL SPECIES	9	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Passeriformes_g	ANCESTRAL SPECIES	10	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Medium ground finch	MODERN SPECIES	50	NSUN4 (ENSGFOG00000010770)	ENSGFOG00000010777	FAAH (ENSGFOG00000010792)	DMBX1 (ENSGFOG00000010834)	ENSGFOG00000010842	MOB3C (ENSGFOG00000010857)	ATPAF1 (ENSGFOG00000010864)	ENSGFOG00000010874	EFCAB14 (ENSGFOG00000010880)	ENSGFOG00000010906	ENSGFOG00000011241	TAL1 (ENSGFOG00000011696)	STIL (ENSGFOG00000011699)	ENSGFOG00000011713	TRABD2B (ENSGFOG00000011719)	SPATA6 (ENSGFOG00000011726) ##22	SLC5A9 (ENSGFOG00000011742)
Passeroidea	ANCESTRAL SPECIES	9	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Zebra finch	MODERN SPECIES	30	ZFYVE9 (ENSTGUG00000008916)	BTF3L4 (ENSTGUG00000027297)	TXNDC12 (ENSTGUG00000008899)	RAB3B (ENSTGUG00000008894)	NRDC (ENSTGUG00000008815)	OSBPL9 (ENSTGUG00000008771)	EPS15 (ENSTGUG00000008685)	TTC39A (ENSTGUG00000008658)	RNF11 (ENSTGUG00000022215)	CDKN2C (ENSTGUG00000026124)	FAF1 (ENSTGUG00000008610)	DMRTA2 (ENSTGUG00000028863)	ELAVL4 (ENSTGUG00000008597)	BEND5 (ENSTGUG00000008591)	AGBL4 (ENSTGUG00000008586)	SPATA6 (ENSTGUG00000025010) ##22	SLC5A9 (ENSTGUG00000028559)	TRABD2B (ENSTGUG00000028844)	FOXD2 (ENSTGUG00000023676)	ENSTGUG00000023854	ENSTGUG00000008563	STIL (ENSTGUG00000008545)	TAL1 (ENSTGUG00000008542)	PDZK1IP1 (ENSTGUG00000008532)	ENSTGUG00000008524	ENSTGUG00000008418	EFCAB14 (ENSTGUG00000008408)	ENSTGUG00000019172	ATPAF1 (ENSTGUG00000008394)	MOB3C (ENSTGUG00000008386)	ENSTGUG00000008358
Common canary	MODERN SPECIES	9	ZFYVE9 (ENSSCAG00000005814)	BTF3L4 (ENSSCAG00000005810)	TXNDC12 (ENSSCAG00000005806)	RAB3B (ENSSCAG00000005800)	NRDC (ENSSCAG00000004323)	OSBPL9 (ENSSCAG00000003797)	EPS15 (ENSSCAG00000003714)	TTC39A (ENSSCAG00000003706)	ENSSCAG00000003699	CDKN2C (ENSSCAG00000003689)	FAF1 (ENSSCAG00000003680)	ELAVL4 (ENSSCAG00000003671)	ENSSCAG00000003665	BEND5 (ENSSCAG00000003637)	ENSSCAG00000003625	SPATA6 (ENSSCAG00000003616) ##22	SLC5A9 (ENSSCAG00000003587)	TRABD2B (ENSSCAG00000003575)	FOXE1 (ENSSCAG00000003549)	ENSSCAG00000003547	STIL (ENSSCAG00000003537)	ENSSCAG00000003518	PDZK1IP1 (ENSSCAG00000003514)	ENSSCAG00000003305	ENSSCAG00000003281	EFCAB14 (ENSSCAG00000003273)	ATPAF1 (ENSSCAG00000003265)	MOB3C (ENSSCAG00000003260)	ENSSCAG00000003252	TMEM275 (ENSSCAG00000003248)	DMBX1 (ENSSCAG00000003244)
Flycatcher	MODERN SPECIES	27	BTF3L4 (ENSFALG00000023382)	TXNDC12 (ENSFALG00000027173)	RAB3B (ENSFALG00000005545)	NRDC (ENSFALG00000005499)	OSBPL9 (ENSFALG00000005477)	EPS15 (ENSFALG00000005442)	TTC39A (ENSFALG00000005395)	ENSFALG00000005378	CDKN2C (ENSFALG00000005371)	FAF1 (ENSFALG00000005360)	DMRTA2 (ENSFALG00000005353)	ELAVL4 (ENSFALG00000025747)	AGBL4 (ENSFALG00000025862)	BEND5 (ENSFALG00000005315)	ENSFALG00000005309	SPATA6 (ENSFALG00000005303) ##22	ENSFALG00000025840	SLC5A9 (ENSFALG00000005278)	TRABD2B (ENSFALG00000005263)	ENSFALG00000009291	ENSFALG00000025721	STIL (ENSFALG00000009298)	TAL1 (ENSFALG00000009303)	PDZK1IP1 (ENSFALG00000009311)	ENSFALG00000009327	ENSFALG00000009359	EFCAB14 (ENSFALG00000009363)	ATPAF1 (ENSFALG00000028925)	MOB3C (ENSFALG00000009374)	ENSFALG00000009378	ENSFALG00000024196
Great tit	MODERN SPECIES	28	TXNDC12 (ENSPMJG00000001041)	RAB3B (ENSPMJG00000001022)	NRDC (ENSPMJG00000000992)	OSBPL9 (ENSPMJG00000000976)	EPS15 (ENSPMJG00000000916)	TTC39A (ENSPMJG00000000876)	RNF11 (ENSPMJG00000000863)	CDKN2C (ENSPMJG00000000777)	FAF1 (ENSPMJG00000000748)	DMRTA2 (ENSPMJG00000000744)	ELAVL4 (ENSPMJG00000000678)	ENSPMJG00000000668	BEND5 (ENSPMJG00000000641)	AGBL4 (ENSPMJG00000000580)	ENSPMJG00000000555	SPATA6 (ENSPMJG00000000488) ##22	SLC5A9 (ENSPMJG00000000463)	TRABD2B (ENSPMJG00000000435)	FOXD2 (ENSPMJG00000000414)	FOXE1 (ENSPMJG00000000299)	ENSPMJG00000000275	STIL (ENSPMJG00000000254)	TAL1 (ENSPMJG00000000238)	PDZK1IP1 (ENSPMJG00000000226)	ENSPMJG00000000216	ENSPMJG00000000189	EFCAB14 (ENSPMJG00000000135)	ATPAF1 (ENSPMJG00000000092)	MOB3C (ENSPMJG00000000048)	ENSPMJG00000019632	TMEM275 (ENSPMJG00000019631)
Neognathae_c	ANCESTRAL SPECIES	7	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Golden eagle	MODERN SPECIES	3	BTF3L4 (ENSACCG00020007446)	TXNDC12 (ENSACCG00020007281)	RAB3B (ENSACCG00020007161)	NRDC (ENSACCG00020006735)	OSBPL9 (ENSACCG00020005731)	EPS15 (ENSACCG00020005155)	TTC39A (ENSACCG00020003801)	RNF11 (ENSACCG00020002601)	CDKN2C (ENSACCG00020002458)	FAF1 (ENSACCG00020009672)	DMRTA2 (ENSACCG00020009658)	ELAVL4 (ENSACCG00020009639)	ENSACCG00020009618	BEND5 (ENSACCG00020009603)	ENSACCG00020009573	SPATA6 (ENSACCG00020009549) ##22	ENSACCG00020009515	TRABD2B (ENSACCG00020009471)	FOXD2 (ENSACCG00020009458)	ENSACCG00020009444	ENSACCG00020009431	ENSACCG00020009428	STIL (ENSACCG00020009378)	TAL1 (ENSACCG00020009310)	PDZK1IP1 (ENSACCG00020009303)	ENSACCG00020009286	ENSACCG00020009272	EFCAB14 (ENSACCG00020009253)	ATPAF1 (ENSACCG00020009237)	MOB3C (ENSACCG00020009219)	ENSACCG00020009204
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	25	RAB3B (ENSSHBG00005008352)	NRDC (ENSSHBG00005008330)	OSBPL9 (ENSSHBG00005007839)	EPS15 (ENSSHBG00005007582)	TTC39A (ENSSHBG00005007564)	RNF11 (ENSSHBG00005007556)	CDKN2C (ENSSHBG00005007538)	FAF1 (ENSSHBG00005007518)	DMRTA2 (ENSSHBG00005007507)	ELAVL4 (ENSSHBG00005007474)	ENSSHBG00005007432	BEND5 (ENSSHBG00005007417)	ENSSHBG00005007400	ENSSHBG00005007379 ##22	ENSSHBG00005007361	ENSSHBG00005007346 ##22	SLC5A9 (ENSSHBG00005007272)	TRABD2B (ENSSHBG00005007228)	FOXD2 (ENSSHBG00005007218)	ENSSHBG00005007192	ENSSHBG00005007170	STIL (ENSSHBG00005007114)	TAL1 (ENSSHBG00005007088)	PDZK1IP1 (ENSSHBG00005007075)	ENSSHBG00005006437	ENSSHBG00005006306	EFCAB14 (ENSSHBG00005006278)	ATPAF1 (ENSSHBG00005006246)	MOB3C (ENSSHBG00005006236)	ENSSHBG00005006223	ENSSHBG00005006177
Kakapo	MODERN SPECIES	25	BTF3L4 (ENSSHBG00005008362)	TXNDC12 (ENSSHBG00005008357)	RAB3B (ENSSHBG00005008352)	NRDC (ENSSHBG00005008330)	OSBPL9 (ENSSHBG00005007839)	EPS15 (ENSSHBG00005007582)	TTC39A (ENSSHBG00005007564)	RNF11 (ENSSHBG00005007556)	CDKN2C (ENSSHBG00005007538)	FAF1 (ENSSHBG00005007518)	DMRTA2 (ENSSHBG00005007507)	ELAVL4 (ENSSHBG00005007474)	ENSSHBG00005007432	BEND5 (ENSSHBG00005007417)	ENSSHBG00005007400	ENSSHBG00005007379 ##22	ENSSHBG00005007361	ENSSHBG00005007346 ##22	SLC5A9 (ENSSHBG00005007272)	TRABD2B (ENSSHBG00005007228)	FOXD2 (ENSSHBG00005007218)	ENSSHBG00005007192	ENSSHBG00005007170	STIL (ENSSHBG00005007114)	TAL1 (ENSSHBG00005007088)	PDZK1IP1 (ENSSHBG00005007075)	ENSSHBG00005006437	ENSSHBG00005006306	EFCAB14 (ENSSHBG00005006278)	ATPAF1 (ENSSHBG00005006246)	MOB3C (ENSSHBG00005006236)
African ostrich	MODERN SPECIES	578														BEND5 (ENSSCUG00000012326)	AGBL4 (ENSSCUG00000012327)	SPATA6 (ENSSCUG00000012330) ##22	SLC5A9 (ENSSCUG00000012331)	TRABD2B (ENSSCUG00000012332)	ENSSCUG00000012336	STIL (ENSSCUG00000012337)	TAL1 (ENSSCUG00000012338)	PDZK1IP1 (ENSSCUG00000012339)	ENSSCUG00000012340	ENSSCUG00000012342	EFCAB14 (ENSSCUG00000012343)	ATPAF1 (ENSSCUG00000012344)	MOB3C (ENSSCUG00000012345)	ENSSCUG00000012346	DMBX1 (ENSSCUG00000012347)	ENSSCUG00000012348	FAAH (ENSSCUG00000012349)
Australian saltwater crocodile	MODERN SPECIES	28	ZFYVE9 (ENSCPRG00005002533)	BTF3L4 (ENSCPRG00005002529)	TXNDC12 (ENSCPRG00005002525)	RAB3B (ENSCPRG00005002515)	ENSCPRG00005000992	OSBPL9 (ENSCPRG00005000700)	EPS15 (ENSCPRG00005000597)	TTC39A (ENSCPRG00005000251)	ENSCPRG00005018102	CDKN2C (ENSCPRG00005018099)	FAF1 (ENSCPRG00005018094)	ELAVL4 (ENSCPRG00005018078)	ENSCPRG00005018070	BEND5 (ENSCPRG00005018063)	ENSCPRG00005018057	SPATA6 (ENSCPRG00005018049) ##22	SLC5A9 (ENSCPRG00005018045)	TRABD2B (ENSCPRG00005018038)	ENSCPRG00005018033	STIL (ENSCPRG00005018027)	TAL1 (ENSCPRG00005018024)	ENSCPRG00005018022	ENSCPRG00005017986	ENSCPRG00005017973	EFCAB14 (ENSCPRG00005017964)	ENSCPRG00005017961	ATPAF1 (ENSCPRG00005017958)	MOB3C (ENSCPRG00005017953)	ENSCPRG00005017951	TMEM275 (ENSCPRG00005017950)	DMBX1 (ENSCPRG00005017947)
Cryptodira	ANCESTRAL SPECIES	8	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000161273	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000016446
Emydidae	ANCESTRAL SPECIES	22	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	46								ENSTMTG00000007006	ENSTMTG00000007057	ENSTMTG00000007877	ENSTMTG00000007898	ENSTMTG00000007902	ENSTMTG00000007916	ENSTMTG00000007936	ENSTMTG00000008028	ENSTMTG00000008048 ##22	ENSTMTG00000008099	ENSTMTG00000008578
Three-toed box turtle	MODERN SPECIES	45									ENSTMTG00000004899	ENSTMTG00000004990	ENSTMTG00000005788	ENSTMTG00000005832	ENSTMTG00000006344	ENSTMTG00000006380	ENSTMTG00000006433	ENSTMTG00000006448 ##22	ENSTMTG00000006516	ENSTMTG00000006952	ENSTMTG00000006961
painted turtle	MODERN SPECIES	698		RAB3B (ENSCPBG00000012333)	ENSCPBG00000010301	OSBPL9 (ENSCPBG00000010097)	EPS15 (ENSCPBG00000010066)	TTC39A (ENSCPBG00000010051)	RNF11 (ENSCPBG00000010042)	CDKN2C (ENSCPBG00000010037)	FAF1 (ENSCPBG00000010024)	DMRTA2 (ENSCPBG00000010018)	ELAVL4 (ENSCPBG00000010017)	ENSCPBG00000010014	ENSCPBG00000010011	BEND5 (ENSCPBG00000010006)	ENSCPBG00000009998	SPATA6 (ENSCPBG00000009991) ##22	SLC5A9 (ENSCPBG00000009981)	ENSCPBG00000009979	ENSCPBG00000009977	ENSCPBG00000009970	ENSCPBG00000009969	STIL (ENSCPBG00000009963)	TAL1 (ENSCPBG00000009956)	PDZK1IP1 (ENSCPBG00000009955)	ENSCPBG00000009909	ENSCPBG00000009792	ENSCPBG00000009551	ENSCPBG00000009505	ENSCPBG00000009470	ENSCPBG00000009449	ENSCPBG00000009058
Testudinidae	ANCESTRAL SPECIES	33	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a.a	ENSGT00940000154690	ENSGT00950000182915.b.b.a.a.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441	ENSGT00940000161527.c.f	ENSGT00940000161527.c.e	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Abingdon island giant tortoise	MODERN SPECIES	2267										ENSCABG00000013386	ENSCABG00000013387	ENSCABG00000013388	ENSCABG00000013390	ENSCABG00000013391	ENSCABG00000013392	SPATA6 (ENSCABG00000013393) ##22	SLC5A9 (ENSCABG00000013394)
Goode s thornscrub tortoise	MODERN SPECIES	22	BTF3L4 (ENSGEVG00005015799)	TXNDC12 (ENSGEVG00005015860)	RAB3B (ENSGEVG00005015931)	ENSGEVG00005015994	OSBPL9 (ENSGEVG00005016164)	EPS15 (ENSGEVG00005016380)	TTC39A (ENSGEVG00005016642)	RNF11 (ENSGEVG00005017825)	CDKN2C (ENSGEVG00005017834)	FAF1 (ENSGEVG00005017857)	DMRTA2 (ENSGEVG00005017905)	ELAVL4 (ENSGEVG00005017971)	ENSGEVG00005018302	BEND5 (ENSGEVG00005018332)	ENSGEVG00005018360	SPATA6 (ENSGEVG00005018413) ##22	SLC5A9 (ENSGEVG00005018452)	FOXD2 (ENSGEVG00005018509)	ENSGEVG00005018529	ENSGEVG00005018548	STIL (ENSGEVG00005018571)	TAL1 (ENSGEVG00005018730)	PDZK1IP1 (ENSGEVG00005018742)	ENSGEVG00005018800	ENSGEVG00005019175	ENSGEVG00005019318	ENSGEVG00005019451	EFCAB14 (ENSGEVG00005019524)	TEX38 (ENSGEVG00005019533)	ATPAF1 (ENSGEVG00005019541)	MOB3C (ENSGEVG00005019561)
Chinese turtle	MODERN SPECIES	1294	ENSPSIG00000000608	ENSPSIG00000009351	ENSPSIG00000009906	OSBPL9 (ENSPSIG00000014233)	EPS15 (ENSPSIG00000015754)	TTC39A (ENSPSIG00000017765)	RNF11 (ENSPSIG00000006280)	CDKN2C (ENSPSIG00000006283)	FAF1 (ENSPSIG00000006306)	ENSPSIG00000008525	ELAVL4 (ENSPSIG00000008545)	ENSPSIG00000000289	BEND5 (ENSPSIG00000008975)	ENSPSIG00000000294	ENSPSIG00000008990	SPATA6 (ENSPSIG00000009039) ##22	SLC5A9 (ENSPSIG00000009335)	ENSPSIG00000000298	ENSPSIG00000000303	ENSPSIG00000010057	ENSPSIG00000010073	ENSPSIG00000010159	STIL (ENSPSIG00000010417)	TAL1 (ENSPSIG00000010614)	ENSPSIG00000010643	ENSPSIG00000012049
Lepidosauria	ANCESTRAL SPECIES	11	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a	ENSGT00940000161441	ENSGT00940000161527.c	ENSGT00390000011196
Episquamata	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c	ENSGT00390000011196
Laterata	ANCESTRAL SPECIES	3	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00990000204056	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a.c	ENSGT00940000161527.d.b.a.c	ENSGT00940000161527.d.b.b	ENSGT00940000161527.c	ENSGT00390000011196	ENSGT00960000192856
Common wall lizard	MODERN SPECIES	14	OSBPL9 (ENSPMRG00000005493)	ENSPMRG00000005528	EPS15 (ENSPMRG00000005708)	TTC39A (ENSPMRG00000005792)	RNF11 (ENSPMRG00000005930)	CDKN2C (ENSPMRG00000005936)	FAF1 (ENSPMRG00000005947)	DMRTA2 (ENSPMRG00000005970)	ENSPMRG00000005978	ELAVL4 (ENSPMRG00000005996)	ENSPMRG00000006025	ENSPMRG00000006039	ENSPMRG00000006044	BEND5 (ENSPMRG00000006049)	ENSPMRG00000006060	SPATA6 (ENSPMRG00000006072) ##22	ENSPMRG00000007706	SLC5A9 (ENSPMRG00000007711)	TRABD2B (ENSPMRG00000007718)	FOXD2 (ENSPMRG00000007722)	ENSPMRG00000007733	ENSPMRG00000007758	STIL (ENSPMRG00000007767)	TAL1 (ENSPMRG00000007774)	PDZK1IP1 (ENSPMRG00000007777)	ENSPMRG00000007789	ENSPMRG00000007850	ENSPMRG00000007855	ENSPMRG00000007867	ENSPMRG00000007869	ENSPMRG00000007876
Argentine black and white tegu	MODERN SPECIES	16	RAB3B (ENSSMRG00000018285)	ENSSMRG00000018286	OSBPL9 (ENSSMRG00000018287)	ENSSMRG00000018288	EPS15 (ENSSMRG00000018289)	RNF11 (ENSSMRG00000018290)	TTC39A (ENSSMRG00000018291)	CDKN2C (ENSSMRG00000018292)	FAF1 (ENSSMRG00000018293)	DMRTA2 (ENSSMRG00000018294)	ENSSMRG00000018296	ELAVL4 (ENSSMRG00000018298)	ENSSMRG00000018299	BEND5 (ENSSMRG00000018300)	ENSSMRG00000018301	SPATA6 (ENSSMRG00000018302) ##22	ENSSMRG00000018303	SLC5A9 (ENSSMRG00000018304)	ENSSMRG00000018306	ENSSMRG00000018307	ENSSMRG00000018308	STIL (ENSSMRG00000018309)	TAL1 (ENSSMRG00000018311)	PDZK1IP1 (ENSSMRG00000018312)	ENSSMRG00000018313	ENSSMRG00000018315	ENSSMRG00000018331	EFCAB14 (ENSSMRG00000018332)	ATPAF1 (ENSSMRG00000018333)	MOB3C (ENSSMRG00000018334)	ENSSMRG00000018336
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT01030000234712.a	ENSGT00940000163630.Q.e.a	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.d.a	ENSGT00940000161527.d.b.a.d	ENSGT00940000161527.c	ENSGT00390000011196	ENSGT00960000192856	ENSGT00390000012765
Elapidae	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724.d	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196	ENSGT00960000192856	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Elapidae_a	ANCESTRAL SPECIES	7	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724.d	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196	ENSGT00960000192856	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Acanthophiinae	ANCESTRAL SPECIES	5	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026.k.a	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b.d	ENSGT00390000001724.d	ENSGT00940000155042.b.c	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.a	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00980000201417	ENSGT00940000161527.d.a	ENSGT00940000161527.c.b	ENSGT00390000011196	ENSGT00960000192856	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Mainland tiger snake	MODERN SPECIES	13	BTF3L4 (ENSNSUG00000018186)	TXNDC12 (ENSNSUG00000018185)	RAB3B (ENSNSUG00000018184)	ENSNSUG00000017629	OSBPL9 (ENSNSUG00000016390)	ENSNSUG00000016329	EPS15 (ENSNSUG00000016327)	TTC39A (ENSNSUG00000016326)	CDKN2C (ENSNSUG00000016325)	FAF1 (ENSNSUG00000016324)	DMRTA2 (ENSNSUG00000016323)	ELAVL4 (ENSNSUG00000016302)	ENSNSUG00000016301	BEND5 (ENSNSUG00000016300)	ENSNSUG00000016299	SPATA6 (ENSNSUG00000016298) ##22	SLC5A9 (ENSNSUG00000016192)	TRABD2B (ENSNSUG00000016185)	FOXD2 (ENSNSUG00000016181)	ENSNSUG00000016180	CMPK1 (ENSNSUG00000016179)	STIL (ENSNSUG00000016176)	TAL1 (ENSNSUG00000016175)	ENSNSUG00000016174	ENSNSUG00000016173	ENSNSUG00000016172	EFCAB14 (ENSNSUG00000016171)	ENSNSUG00000016170	ATPAF1 (ENSNSUG00000016169)	MOB3C (ENSNSUG00000016168)	ENSNSUG00000016167
Eastern brown snake	MODERN SPECIES	34	RAB3B (ENSPTXG00000001902)	ENSPTXG00000001900	OSBPL9 (ENSPTXG00000001894)	ENSPTXG00000001890	EPS15 (ENSPTXG00000001884)	TTC39A (ENSPTXG00000001883)	RNF11 (ENSPTXG00000001882)	CDKN2C (ENSPTXG00000001881)	FAF1 (ENSPTXG00000001880)	DMRTA2 (ENSPTXG00000001879)	ENSPTXG00000001878	ELAVL4 (ENSPTXG00000001627)	ENSPTXG00000001605	BEND5 (ENSPTXG00000001603)	AGBL4 (ENSPTXG00000001598)	SPATA6 (ENSPTXG00000001592) ##22	SLC5A9 (ENSPTXG00000001588)	TRABD2B (ENSPTXG00000001584)	FOXD2 (ENSPTXG00000001582)	ENSPTXG00000001580	ENSPTXG00000001577	STIL (ENSPTXG00000001553)	ENSPTXG00000001547	ENSPTXG00000001545	ENSPTXG00000001532	ENSPTXG00000001527	EFCAB14 (ENSPTXG00000001523)	ENSPTXG00000001516	ATPAF1 (ENSPTXG00000001511)	MOB3C (ENSPTXG00000001507)	ENSPTXG00000001502
Blue-lipped sea krait	MODERN SPECIES	2331																SPATA6 (ENSLLTG00000000305) ##22
Indian cobra	MODERN SPECIES	2	ENSNNAG00000011679	OSBPL9 (ENSNNAG00000011517)	ENSNNAG00000011439	EPS15 (ENSNNAG00000011248)	TTC39A (ENSNNAG00000011153)	RNF11 (ENSNNAG00000011128)	CDKN2C (ENSNNAG00000011113)	ENSNNAG00000011091	ENSNNAG00000011066	FAF1 (ENSNNAG00000010998)	DMRTA2 (ENSNNAG00000010977)	ELAVL4 (ENSNNAG00000010818)	ENSNNAG00000010783	BEND5 (ENSNNAG00000010746)	ENSNNAG00000010704	SPATA6 (ENSNNAG00000010665) ##22	SLC5A9 (ENSNNAG00000010629)	TRABD2B (ENSNNAG00000010576)	FOXD2 (ENSNNAG00000010546)	ENSNNAG00000010525	CMPK1 (ENSNNAG00000010501)	STIL (ENSNNAG00000010456)	TAL1 (ENSNNAG00000010424)	ENSNNAG00000009996	ENSNNAG00000009903	EFCAB14 (ENSNNAG00000009832)	ENSNNAG00000009790	ATPAF1 (ENSNNAG00000009764)	MOB3C (ENSNNAG00000009741)	ENSNNAG00000009684	DMBX1 (ENSNNAG00000009640)
Lizard	MODERN SPECIES	863															ENSACAG00000028425	ENSACAG00000005675 ##22	ENSACAG00000043550	ENSACAG00000044494	ENSACAG00000041750	ENSACAG00000005693	ENSACAG00000005879	ENSACAG00000044679	ENSACAG00000043050	ENSACAG00000042624	TRABD2B (ENSACAG00000029091)	FOXD2 (ENSACAG00000005885)	ENSACAG00000009553	CMPK1 (ENSACAG00000040184)	STIL (ENSACAG00000005943)	TAL1 (ENSACAG00000005980)	PDZK1IP1 (ENSACAG00000028602)
tuatara	MODERN SPECIES	1725	TXNDC12 (ENSSPUG00000013056)	RAB3B (ENSSPUG00000013039)	ENSSPUG00000013001	OSBPL9 (ENSSPUG00000012142)	ENSSPUG00000011884	ENSSPUG00000011863	EPS15 (ENSSPUG00000011819)	TTC39A (ENSSPUG00000011783)	RNF11 (ENSSPUG00000011773)	CDKN2C (ENSSPUG00000011758)	FAF1 (ENSSPUG00000011732)	ELAVL4 (ENSSPUG00000011636)	ENSSPUG00000011621	ENSSPUG00000011602	ENSSPUG00000011592	SPATA6 (ENSSPUG00000011583) ##22	SLC5A9 (ENSSPUG00000011544)	FOXD2 (ENSSPUG00000011531)	ENSSPUG00000011518	ENSSPUG00000011504	STIL (ENSSPUG00000011248)	TAL1 (ENSSPUG00000011173)	CYP4B38 (ENSSPUG00000010929)	CYP4B37 (ENSSPUG00000010107)	CYP4B36 (ENSSPUG00000009899)	CYP4B35 (ENSSPUG00000009557)	CYP4B1 (ENSSPUG00000009405)	EFCAB14 (ENSSPUG00000009350)	ATPAF1 (ENSSPUG00000009006)	MOB3C (ENSSPUG00000008916)	ENSSPUG00000008905
Mammalia	ANCESTRAL SPECIES	47	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000159943	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00980000201734	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00390000008086
Theria	ANCESTRAL SPECIES	3	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00940000162886
Eutheria	ANCESTRAL SPECIES		ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000163504
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000163504
Primates	ANCESTRAL SPECIES	4	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504	ENSGT00940000161441
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000154296.qb.a	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Mouse lemur	MODERN SPECIES	11	ENSMICG00000029083	ENSMICG00000002731	ENSMICG00000044074	ENSMICG00000001200	TTC39A (ENSMICG00000008377)	ENSMICG00000047946	ENSMICG00000005503	C1orf185 (ENSMICG00000004061)	CDKN2C (ENSMICG00000033935)	FAF1 (ENSMICG00000003299)	DMRTA2 (ENSMICG00000044233)	ELAVL4 (ENSMICG00000003286)	AGBL4 (ENSMICG00000003275)	ENSMICG00000037766	BEND5 (ENSMICG00000003282)	SPATA6 (ENSMICG00000003269) ##22	SLC5A9 (ENSMICG00000012426)	TRABD2B (ENSMICG00000033266)	FOXD2 (ENSMICG00000034204)	FOXE3 (ENSMICG00000029422)	CMPK1 (ENSMICG00000005386)	STIL (ENSMICG00000005402)	TAL1 (ENSMICG00000045732)	PDZK1IP1 (ENSMICG00000043731)	CYP4B1 (ENSMICG00000000962)	ENSMICG00000031270	CYP4A11 (ENSMICG00000000965)	EFCAB14 (ENSMICG00000047159)	TEX38 (ENSMICG00000000074)	ATPAF1 (ENSMICG00000000075)	ENSMICG00000000071
Lemuriformes_a	ANCESTRAL SPECIES	20	ENSGT00940000154296.qb.a	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Coquerels sifaka	MODERN SPECIES	162	RAB3B (ENSPCOG00000018696)	NRDC (ENSPCOG00000024524)	OSBPL9 (ENSPCOG00000027695)	ENSPCOG00000012900	TTC39A (ENSPCOG00000018198)	RNF11 (ENSPCOG00000015322)	C1orf185 (ENSPCOG00000025481)	ENSPCOG00000026759	CDKN2C (ENSPCOG00000019258)	FAF1 (ENSPCOG00000025141)	ENSPCOG00000028658	DMRTA2 (ENSPCOG00000028074)	ELAVL4 (ENSPCOG00000024957)	AGBL4 (ENSPCOG00000019895)	BEND5 (ENSPCOG00000023490)	SPATA6 (ENSPCOG00000008715) ##22	SLC5A9 (ENSPCOG00000004667)
Greater bamboo lemur	MODERN SPECIES	358																SPATA6 (ENSPSMG00000012753) ##22	ENSPSMG00000012764	SLC5A9 (ENSPSMG00000012801)	TRABD2B (ENSPSMG00000012821)	FOXD2 (ENSPSMG00000012827)	FOXE3 (ENSPSMG00000012832)	CMPK1 (ENSPSMG00000012868)	STIL (ENSPSMG00000012951)	TAL1 (ENSPSMG00000013005)	PDZK1IP1 (ENSPSMG00000013009)	CYP4X1 (ENSPSMG00000013014)	ENSPSMG00000013059	CYP4B1 (ENSPSMG00000013132)	EFCAB14 (ENSPSMG00000013162)	TEX38 (ENSPSMG00000013186)	ATPAF1 (ENSPSMG00000013241)
Bushbaby	MODERN SPECIES	274	RAB3B (ENSOGAG00000003796)	ENSOGAG00000003792	OSBPL9 (ENSOGAG00000003787)	ENSOGAG00000026601	EPS15 (ENSOGAG00000001077)	TTC39A (ENSOGAG00000011685)	RNF11 (ENSOGAG00000011682)	CDKN2C (ENSOGAG00000003625)	FAF1 (ENSOGAG00000003624)	ENSOGAG00000033138	DMRTA2 (ENSOGAG00000026143)	ELAVL4 (ENSOGAG00000016990)	ENSOGAG00000026942	BEND5 (ENSOGAG00000005779)	ENSOGAG00000004600	SPATA6 (ENSOGAG00000005014) ##22	SLC5A9 (ENSOGAG00000005008)
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504
Tarsier	MODERN SPECIES	4260														BEND5 (ENSTSYG00000007521)	AGBL4 (ENSTSYG00000002596)	SPATA6 (ENSTSYG00000004949) ##22	ENSTSYG00000033425	SLC5A9 (ENSTSYG00000008041)
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000154296.kb	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000154296.kb	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446
Marmoset	MODERN SPECIES	19	ENSCJAG00000071627	EPS15 (ENSCJAG00000021570)	TTC39A (ENSCJAG00000021569)	RNF11 (ENSCJAG00000071727)	ENSCJAG00000077996	C1orf185 (ENSCJAG00000021565)	ENSCJAG00000081094	ENSCJAG00000076266	CDKN2C (ENSCJAG00000060144)	DMRTA2 (ENSCJAG00000041134)	FAF1 (ENSCJAG00000021555)	ELAVL4 (ENSCJAG00000013725)	ENSCJAG00000078422	BEND5 (ENSCJAG00000021284)	ENSCJAG00000081866	SPATA6 (ENSCJAG00000039778) ##22	SLC5A9 (ENSCJAG00000021271)	TRABD2B (ENSCJAG00000042725)	ENSCJAG00000071656	FOXD2 (ENSCJAG00000021263)	FOXE3 (ENSCJAG00000038878)	CMPK1 (ENSCJAG00000021250)	STIL (ENSCJAG00000021228)	TAL1 (ENSCJAG00000053562)	PDZK1IP1 (ENSCJAG00000046011)	ENSCJAG00000083949	ENSCJAG00000062966	CYP4X1 (ENSCJAG00000043987)	EFCAB14 (ENSCJAG00000046008)	TEX38 (ENSCJAG00000021163)	ATPAF1 (ENSCJAG00000070547)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000154296.kb	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446
Bolivian squirrel monkey	MODERN SPECIES	45	EPS15 (ENSSBOG00000021478)	TTC39A (ENSSBOG00000034095)	RNF11 (ENSSBOG00000029247)	C1orf185 (ENSSBOG00000034584)	CDKN2C (ENSSBOG00000035100)	FAF1 (ENSSBOG00000035904)	ENSSBOG00000021083	ENSSBOG00000024407	ENSSBOG00000031899	ENSSBOG00000035179	ENSSBOG00000029666	DMRTA2 (ENSSBOG00000025121)	ELAVL4 (ENSSBOG00000022965)	AGBL4 (ENSSBOG00000031864)	BEND5 (ENSSBOG00000015358)	SPATA6 (ENSSBOG00000026364) ##22	ENSSBOG00000034864	SLC5A9 (ENSSBOG00000031062)	TRABD2B (ENSSBOG00000021713)	CMPK1 (ENSSBOG00000023132)	STIL (ENSSBOG00000035433)	PDZK1IP1 (ENSSBOG00000033779)	ENSSBOG00000035852	NR2F2 (ENSSBOG00000020466)	MCTP2 (ENSSBOG00000029271)	RGMA (ENSSBOG00000023291)	CHD2 (ENSSBOG00000023754)	ENSSBOG00000033087	ENSSBOG00000000134	ST8SIA2 (ENSSBOG00000023341)	SLCO3A1 (ENSSBOG00000031641)
Capuchin	MODERN SPECIES	430												ENSCCAG00000028237	BEND5 (ENSCCAG00000027560)	AGBL4 (ENSCCAG00000026572)	ENSCCAG00000025907	SPATA6 (ENSCCAG00000025511) ##22	SLC5A9 (ENSCCAG00000024082)	TRABD2B (ENSCCAG00000023756)	FOXD2 (ENSCCAG00000031918)	FOXE3 (ENSCCAG00000018685)	CMPK1 (ENSCCAG00000013287)
Mas night monkey	MODERN SPECIES	679	C1orf185 (ENSANAG00000033385)	ENSANAG00000037551	ENSANAG00000031477	CDKN2C (ENSANAG00000033643)	ENSANAG00000037373	ENSANAG00000023034	FAF1 (ENSANAG00000033702)	ENSANAG00000028849	ENSANAG00000028980	ENSANAG00000022650	DMRTA2 (ENSANAG00000033164)	ELAVL4 (ENSANAG00000030598)	ENSANAG00000031055	AGBL4 (ENSANAG00000022272)	BEND5 (ENSANAG00000018794)	SPATA6 (ENSANAG00000033722) ##22	SLC5A9 (ENSANAG00000022766)	TRABD2B (ENSANAG00000036722)	FOXE3 (ENSANAG00000019840)	CMPK1 (ENSANAG00000033187)	STIL (ENSANAG00000025280)	TAL1 (ENSANAG00000018338)	PDZK1IP1 (ENSANAG00000037310)	CYP4Z1 (ENSANAG00000032825)	CYP4X1 (ENSANAG00000034247)	ENSANAG00000035850	CYP4A11 (ENSANAG00000019404)	EFCAB14 (ENSANAG00000023693)	TEX38 (ENSANAG00000022553)	ATPAF1 (ENSANAG00000033472)	MOB3C (ENSANAG00000036313)
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504	ENSGT00940000161441	ENSGT00390000011196
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504.a	ENSGT00940000161441	ENSGT00390000011196
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.a.a	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504.a.b	ENSGT00940000161441
Gorilla	MODERN SPECIES		NRDC (ENSGGOG00000004793)	OSBPL9 (ENSGGOG00000004787)	EPS15 (ENSGGOG00000006160)	TTC39A (ENSGGOG00000012965)	ENSGGOG00000025934	RNF11 (ENSGGOG00000004919)	ENSGGOG00000040829	C1orf185 (ENSGGOG00000015902)	CDKN2C (ENSGGOG00000017023)	FAF1 (ENSGGOG00000013273)	ENSGGOG00000013269	ENSGGOG00000024575	ELAVL4 (ENSGGOG00000000634)	BEND5 (ENSGGOG00000003566)	AGBL4 (ENSGGOG00000043434)	SPATA6 (ENSGGOG00000001284) ##22	ENSGGOG00000028320	SLC5A9 (ENSGGOG00000012140)	ENSGGOG00000044020	TRABD2B (ENSGGOG00000037702)	ENSGGOG00000039974	STIL (ENSGGOG00000000512)	TAL1 (ENSGGOG00000043148)	PDZK1IP1 (ENSGGOG00000011765)	ENSGGOG00000015363	ENSGGOG00000001801	CYP4X1 (ENSGGOG00000000133)	ENSGGOG00000021983	CYP4B1 (ENSGGOG00000016855)	EFCAB14 (ENSGGOG00000012677)	TEX38 (ENSGGOG00000026717)
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504.a.b	ENSGT00940000161441
Human	MODERN SPECIES		KTI12 (ENSG00000198841)	TXNDC12 (ENSG00000117862)	RAB3B (ENSG00000169213)	NRDC (ENSG00000078618)	OSBPL9 (ENSG00000117859)	EPS15 (ENSG00000085832)	TTC39A (ENSG00000085831)	RNF11 (ENSG00000123091)	C1orf185 (ENSG00000204006)	CDKN2C (ENSG00000123080)	FAF1 (ENSG00000185104)	DMRTA2 (ENSG00000142700)	ELAVL4 (ENSG00000162374)	BEND5 (ENSG00000162373)	AGBL4 (ENSG00000186094)	SPATA6 (ENSG00000132122) ##22	SLC5A9 (ENSG00000117834)	TRABD2B (ENSG00000269113)	FOXD2 (ENSG00000186564)	FOXE3 (ENSG00000186790)	CMPK1 (ENSG00000162368)	STIL (ENSG00000123473)	TAL1 (ENSG00000162367)	PDZK1IP1 (ENSG00000162366)	CYP4A22 (ENSG00000162365)	CYP4Z1 (ENSG00000186160)	CYP4X1 (ENSG00000186377)	CYP4A11 (ENSG00000187048)	CYP4B1 (ENSG00000142973)	EFCAB14 (ENSG00000159658)	TEX38 (ENSG00000186118)
Pan	ANCESTRAL SPECIES		ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.b	ENSGT00940000160927.f	ENSGT00940000160927.e	ENSGT00940000163504.a.b	ENSGT00940000161441
Chimpanzee	MODERN SPECIES		NRDC (ENSPTRG00000000731)	OSBPL9 (ENSPTRG00000000730)	EPS15 (ENSPTRG00000000729)	TTC39A (ENSPTRG00000000728)	RNF11 (ENSPTRG00000041089)	ENSPTRG00000046419	C1H1orf185 (ENSPTRG00000030611)	CDKN2C (ENSPTRG00000000726)	FAF1 (ENSPTRG00000000725)	DMRTA2 (ENSPTRG00000000724)	ENSPTRG00000051047	ENSPTRG00000051295	ELAVL4 (ENSPTRG00000000723)	BEND5 (ENSPTRG00000000721)	AGBL4 (ENSPTRG00000043865)	SPATA6 (ENSPTRG00000000718) ##22	ENSPTRG00000048491	SLC5A9 (ENSPTRG00000000716)	ENSPTRG00000043073	TRABD2B (ENSPTRG00000052213)	FOXD2 (ENSPTRG00000030617)	FOXE3 (ENSPTRG00000030618)	CMPK1 (ENSPTRG00000000712)	STIL (ENSPTRG00000000711)	TAL1 (ENSPTRG00000051380)	PDZK1IP1 (ENSPTRG00000000709)	ENSPTRG00000000708	CYP4Z1 (ENSPTRG00000000707)	CYP4X1 (ENSPTRG00000000706)	CYP4A22 (ENSPTRG00000000705)	CYP4B1 (ENSPTRG00000000702)
Bonobo	MODERN SPECIES		NRDC (ENSPPAG00000034186)	OSBPL9 (ENSPPAG00000021541)	EPS15 (ENSPPAG00000033044)	TTC39A (ENSPPAG00000031439)	RNF11 (ENSPPAG00000039746)	ENSPPAG00000032042	C1orf185 (ENSPPAG00000024891)	CDKN2C (ENSPPAG00000038172)	FAF1 (ENSPPAG00000032838)	ENSPPAG00000033541	ENSPPAG00000035672	ENSPPAG00000023840	ELAVL4 (ENSPPAG00000042402)	BEND5 (ENSPPAG00000040466)	AGBL4 (ENSPPAG00000033362)	SPATA6 (ENSPPAG00000028728) ##22	ENSPPAG00000009942	SLC5A9 (ENSPPAG00000034646)	TRABD2B (ENSPPAG00000015081)	ENSPPAG00000027235	STIL (ENSPPAG00000037591)	TAL1 (ENSPPAG00000033189)	PDZK1IP1 (ENSPPAG00000032727)	CYP4A22 (ENSPPAG00000030867)	CYP4Z1 (ENSPPAG00000033041)	CYP4X1 (ENSPPAG00000034593)	CYP4A11 (ENSPPAG00000040374)	CYP4B1 (ENSPPAG00000033977)	EFCAB14 (ENSPPAG00000043833)	TEX38 (ENSPPAG00000034178)	ATPAF1 (ENSPPAG00000031376)
Orangutan	MODERN SPECIES		NRDC (ENSPPYG00000001357)	OSBPL9 (ENSPPYG00000001358)	EPS15 (ENSPPYG00000001359)	TTC39A (ENSPPYG00000001360)	RNF11 (ENSPPYG00000040291)	ENSPPYG00000001362	ENSPPYG00000039022	C1orf185 (ENSPPYG00000001364)	CDKN2C (ENSPPYG00000001365)	FAF1 (ENSPPYG00000029417)	DMRTA2 (ENSPPYG00000001366)	ELAVL4 (ENSPPYG00000001367)	AGBL4 (ENSPPYG00000001368)	ENSPPYG00000038734 ##9	BEND5 (ENSPPYG00000001371)	SPATA6 (ENSPPYG00000001372) ##22	SLC5A9 (ENSPPYG00000001373)	TRABD2B (ENSPPYG00000001376)	FOXD2 (ENSPPYG00000001378)	CMPK1 (ENSPPYG00000001380)	STIL (ENSPPYG00000001381)	ENSPPYG00000035408	PDZK1IP1 (ENSPPYG00000001383)	CYP4Z1 (ENSPPYG00000001386)	CYP4X1 (ENSPPYG00000001384)	CYP4A22 (ENSPPYG00000001385)	CYP4B1 (ENSPPYG00000001387)	ENSPPYG00000001388	EFCAB14 (ENSPPYG00000001389)	TEX38 (ENSPPYG00000001390)	ATPAF1 (ENSPPYG00000001391)
Gibbon	MODERN SPECIES	2	TXNDC12 (ENSNLEG00000034609)	RAB3B (ENSNLEG00000016065)	NRDC (ENSNLEG00000016067)	OSBPL9 (ENSNLEG00000016138)	ENSNLEG00000016192	TTC39A (ENSNLEG00000016232)	ENSNLEG00000033471	ENSNLEG00000029189	CDKN2C (ENSNLEG00000016259)	FAF1 (ENSNLEG00000016263)	ENSNLEG00000027959	ENSNLEG00000032288	ELAVL4 (ENSNLEG00000016303)	BEND5 (ENSNLEG00000033925)	AGBL4 (ENSNLEG00000016327)	SPATA6 (ENSNLEG00000016340) ##22	ENSNLEG00000036336	SLC5A9 (ENSNLEG00000016351)	ENSNLEG00000034414	ENSNLEG00000016372	ENSNLEG00000016374	STIL (ENSNLEG00000016386)	ENSNLEG00000027215	PDZK1IP1 (ENSNLEG00000016402)	ENSNLEG00000016409	EFCAB14 (ENSNLEG00000016421)	TEX38 (ENSNLEG00000016440)	ENSNLEG00000030967	MOB3C (ENSNLEG00000016442)	MKNK1 (ENSNLEG00000016447)	ENSNLEG00000016455
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000155751	ENSGT00940000154319.u.b.b	ENSGT00950000183073.b.p	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b	ENSGT00940000154326.a.a.h	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504.c	ENSGT00940000161441	ENSGT00390000011196.e
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000155026	ENSGT00940000154690.ub.b	ENSGT00940000155751	ENSGT00940000154319.u.b.b	ENSGT00950000183073.b.p	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.d	ENSGT00940000160927.e	ENSGT00940000163504.c	ENSGT00940000161441	ENSGT00390000011196.e
Vervet Monkey	MODERN SPECIES	12	TXNDC12 (ENSCSAG00000001270)	RAB3B (ENSCSAG00000001269)	NRDC (ENSCSAG00000001268)	OSBPL9 (ENSCSAG00000001267)	EPS15 (ENSCSAG00000001266)	TTC39A (ENSCSAG00000001265)	RNF11 (ENSCSAG00000001264)	C1orf185 (ENSCSAG00000001262)	CDKN2C (ENSCSAG00000001261)	FAF1 (ENSCSAG00000001260)	DMRTA2 (ENSCSAG00000001259)	ENSCSAG00000001258	ELAVL4 (ENSCSAG00000001257)	BEND5 (ENSCSAG00000001256)	ENSCSAG00000001255	SPATA6 (ENSCSAG00000001254) ##22	SLC5A9 (ENSCSAG00000001253)	ENSCSAG00000001252	ENSCSAG00000001251	TRABD2B (ENSCSAG00000001250)	FOXD2 (ENSCSAG00000000144)	FOXE3 (ENSCSAG00000000143)	CMPK1 (ENSCSAG00000001249)	STIL (ENSCSAG00000001248)	TAL1 (ENSCSAG00000001247)	PDZK1IP1 (ENSCSAG00000001246)	ENSCSAG00000000142	CYP4A22 (ENSCSAG00000001245)	CYP4X1 (ENSCSAG00000001244)	ENSCSAG00000001243	CYP4B1 (ENSCSAG00000001242)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.c.a	ENSGT00940000160927.e	ENSGT00940000163504.c.b	ENSGT00940000161441	ENSGT00390000011196.e
Macaca	ANCESTRAL SPECIES		ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589.g.b	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.c.a	ENSGT00940000160927.e	ENSGT00940000163504.c.b	ENSGT00940000161441	ENSGT00390000011196.e
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000155751	ENSGT00940000154319.u.b.b	ENSGT00950000182917.a.b.a	ENSGT00940000163721	ENSGT01030000238095.a.a.b.b	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.b.b.d	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000160589.h	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.c.a	ENSGT00940000160927.e	ENSGT00940000163504.c.b	ENSGT00940000161441	ENSGT00390000011196.e	ENSGT00390000016446	ENSGT00390000012765
Rhesus	MODERN SPECIES		NRDC (ENSMMUG00000004738)	OSBPL9 (ENSMMUG00000004735)	EPS15 (ENSMMUG00000012055)	ENSMMUG00000043311	ENSMMUG00000058438	TTC39A (ENSMMUG00000004564)	RNF11 (ENSMMUG00000012112)	ENSMMUG00000058388	C1H1orf185 (ENSMMUG00000006651)	CDKN2C (ENSMMUG00000019057)	FAF1 (ENSMMUG00000019056)	DMRTA2 (ENSMMUG00000052908)	ELAVL4 (ENSMMUG00000021933)	BEND5 (ENSMMUG00000008828)	ENSMMUG00000056990	SPATA6 (ENSMMUG00000009282) ##22	SLC5A9 (ENSMMUG00000007558)	ENSMMUG00000049296	TRABD2B (ENSMMUG00000032139)	ENSMMUG00000057159	FOXD2 (ENSMMUG00000018556)	FOXE3 (ENSMMUG00000064635)	CMPK1 (ENSMMUG00000017375)	STIL (ENSMMUG00000020389)	PDZK1IP1 (ENSMMUG00000061850)	CYP4A11 (ENSMMUG00000032143)	CYP4X1 (ENSMMUG00000018867)	CYP4A45 (ENSMMUG00000019871)	CYP4B1 (ENSMMUG00000019873)	ENSMMUG00000056043	TEX38 (ENSMMUG00000004864)
Pig-tailed macaque	MODERN SPECIES	217	RNF11 (ENSMNEG00000044248)	ENSMNEG00000043444	C1orf185 (ENSMNEG00000034636)	ENSMNEG00000042352	ENSMNEG00000039144	CDKN2C (ENSMNEG00000031706)	FAF1 (ENSMNEG00000029437)	DMRTA2 (ENSMNEG00000036377)	ENSMNEG00000029667	ENSMNEG00000014551	ENSMNEG00000021112	ELAVL4 (ENSMNEG00000035576)	ENSMNEG00000030170	BEND5 (ENSMNEG00000030902)	AGBL4 (ENSMNEG00000028894)	SPATA6 (ENSMNEG00000036437) ##22	SLC5A9 (ENSMNEG00000028284)	ENSMNEG00000042343	ENSMNEG00000023828	TRABD2B (ENSMNEG00000028952)	FOXD2 (ENSMNEG00000024922)	FOXE3 (ENSMNEG00000009558)	CMPK1 (ENSMNEG00000037131)	STIL (ENSMNEG00000044743)	TAL1 (ENSMNEG00000043031)	PDZK1IP1 (ENSMNEG00000034766)	ENSMNEG00000026248	CYP4X1 (ENSMNEG00000024746)	CYP4B1 (ENSMNEG00000041426)	EFCAB14 (ENSMNEG00000041371)	TEX38 (ENSMNEG00000036840)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00730000110988	ENSGT00950000183000.c.a.a.i.a.a.b.a.a.c.a.a	ENSGT00390000000797	ENSGT00390000008296.b.a.b.c.a.a	ENSGT00910000146631	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000153117.B.c.a.r.b.a	ENSGT00940000154326.a.a.h.f	ENSGT00390000009405.b.c.a.a.d.b.b.b	ENSGT00940000157399	ENSGT00530000064407.b.b.d.i.a.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000155173	ENSGT00940000163504.c.b	ENSGT00940000163504.d	ENSGT00940000161441
Cercopithecinae_d	ANCESTRAL SPECIES	191														ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504.c.b	ENSGT00940000155173	ENSGT00940000160927.e	ENSGT00940000160927.f
Drill	MODERN SPECIES	1345																SPATA6 (ENSMLEG00000030668) ##22	SLC5A9 (ENSMLEG00000034147)	ENSMLEG00000032370	TRABD2B (ENSMLEG00000030749)	ENSMLEG00000039966	STIL (ENSMLEG00000042176)	TAL1 (ENSMLEG00000042268)	PDZK1IP1 (ENSMLEG00000034076)
Sooty mangabey	MODERN SPECIES	360														BEND5 (ENSCATG00000007212)	AGBL4 (ENSCATG00000015277)	SPATA6 (ENSCATG00000012461) ##22	SLC5A9 (ENSCATG00000003291)	ENSCATG00000002046	TRABD2B (ENSCATG00000006160)	FOXD2 (ENSCATG00000024535)	FOXE3 (ENSCATG00000043314)	CMPK1 (ENSCATG00000013741)	STIL (ENSCATG00000034015)	TAL1 (ENSCATG00000015002)	PDZK1IP1 (ENSCATG00000037237)	CYP4A11 (ENSCATG00000037461)	CYP4X1 (ENSCATG00000037770)	CYP4Z1 (ENSCATG00000033296)
Olive baboon	MODERN SPECIES		NRDC (ENSPANG00000017224)	OSBPL9 (ENSPANG00000005884)	ENSPANG00000039561	ENSPANG00000032379	EPS15 (ENSPANG00000002942)	TTC39A (ENSPANG00000018680)	RNF11 (ENSPANG00000019410)	ENSPANG00000029418	C1orf185 (ENSPANG00000005045)	CDKN2C (ENSPANG00000035708)	FAF1 (ENSPANG00000015883)	DMRTA2 (ENSPANG00000012592)	ENSPANG00000033296	ELAVL4 (ENSPANG00000017754)	AGBL4 (ENSPANG00000034366)	SPATA6 (ENSPANG00000014017) ##22	ENSPANG00000021593	ENSPANG00000005788	ENSPANG00000011532	ENSPANG00000001010	TRABD2B (ENSPANG00000012233)	FOXD2 (ENSPANG00000017227)	FOXE3 (ENSPANG00000011983)	CMPK1 (ENSPANG00000019968)	STIL (ENSPANG00000020258)	TAL1 (ENSPANG00000009893)	PDZK1IP1 (ENSPANG00000035359)	ENSPANG00000044971	ENSPANG00000039694	CYP4X1 (ENSPANG00000009894)	ENSPANG00000047962
Rhinopithecus	ANCESTRAL SPECIES	172														ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927.e	ENSGT00940000163504.c	ENSGT00940000161441	ENSGT00390000011196.e	ENSGT00390000016446	ENSGT00390000012765	ENSGT00620000089223	ENSGT01050000244898.a.a.b
Black snub-nosed monkey	MODERN SPECIES	220														AGBL4 (ENSRBIG00000036871)	BEND5 (ENSRBIG00000036850)	SPATA6 (ENSRBIG00000038558) ##22	SLC5A9 (ENSRBIG00000010075)	ENSRBIG00000040410	ENSRBIG00000040965	ENSRBIG00000044514
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	2059														BEND5 (ENSRROG00000038073)	AGBL4 (ENSRROG00000023433)	ENSRROG00000041785 ##22
Golden snub-nosed monkey	MODERN SPECIES	3136																ENSRROG00000037228 ##22	SLC5A9 (ENSRROG00000044270)	ENSRROG00000039977	ENSRROG00000036867	TRABD2B (ENSRROG00000044560)	ENSRROG00000026568	ENSRROG00000010148	CMPK1 (ENSRROG00000031992)	STIL (ENSRROG00000030013)	TAL1 (ENSRROG00000039099)	PDZK1IP1 (ENSRROG00000033498)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196
Tree shrew	MODERN SPECIES	1418														ELAVL4 (ENSTBEG00000011730)	AGBL4 (ENSTBEG00000011525)	SPATA6 (ENSTBEG00000011254) ##22
Glires	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.a.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00980000201734	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a	ENSGT00400000024146
Rabbit	MODERN SPECIES	4	ENSOCUG00000038347	CDKN2C (ENSOCUG00000008385)	FAF1 (ENSOCUG00000031945)	DMRTA2 (ENSOCUG00000001019)	ELAVL4 (ENSOCUG00000016262)	ENSOCUG00000037999	ENSOCUG00000030354	ENSOCUG00000029778	ENSOCUG00000031084	ENSOCUG00000035051	ENSOCUG00000023561	ENSOCUG00000011146	ENSOCUG00000033406	BEND5 (ENSOCUG00000006471)	ENSOCUG00000006460	SPATA6 (ENSOCUG00000008704) ##22	ENSOCUG00000021113	SLC5A9 (ENSOCUG00000007119)	ENSOCUG00000031714	TRABD2B (ENSOCUG00000035774)	CMPK1 (ENSOCUG00000012424)	STIL (ENSOCUG00000013586)	TAL1 (ENSOCUG00000017248)	ENSOCUG00000038723	ENSOCUG00000030697	CYP4X1 (ENSOCUG00000008267)	ENSOCUG00000034966	ENSOCUG00000034574	CYP4A5 (ENSOCUG00000025702)	CYP4B1 (ENSOCUG00000011201)	ENSOCUG00000012284
Rodentia	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a	ENSGT00940000155173.f.b.a	ENSGT00940000163570
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.mb.b	ENSGT00940000154690.nb	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a	ENSGT00940000163570	ENSGT00940000161441
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.mb.b	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988.f	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A.d	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a.a	ENSGT00940000163570.c
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005016989	OSBPL9 (ENSSVLG00005016219)	ENSSVLG00005016060	ENSSVLG00005016035	EPS15 (ENSSVLG00005015885)	TTC39A (ENSSVLG00005015332)	ENSSVLG00005015243	ENSSVLG00005015219	C1orf185 (ENSSVLG00005015015)	CDKN2C (ENSSVLG00005014944)	FAF1 (ENSSVLG00005014843)	DMRTA2 (ENSSVLG00005014792)	ELAVL4 (ENSSVLG00005014154)	BEND5 (ENSSVLG00005013425)	AGBL4 (ENSSVLG00005013331)	SPATA6 (ENSSVLG00005013178) ##22	SLC5A9 (ENSSVLG00005012665)	ENSSVLG00005012469	ENSSVLG00005012369	ENSSVLG00005012317	TRABD2B (ENSSVLG00005012216)	FOXD2 (ENSSVLG00005012190)	FOXE3 (ENSSVLG00005012158)	ENSSVLG00005012034	STIL (ENSSVLG00005011246)	TAL1 (ENSSVLG00005011145)	PDZK1IP1 (ENSSVLG00005011099)	CYP4X1 (ENSSVLG00005010957)	ENSSVLG00005010122	ENSSVLG00005009845	ENSSVLG00005008878
Marmotini	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.mb.b	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988.f	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d	ENSGT00940000164707.e.b	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a.a
Alpin marmot	MODERN SPECIES	15	NRDC (ENSMMMG00000016570)	ENSMMMG00000016694	ENSMMMG00000017393	ENSMMMG00000017404	EPS15 (ENSMMMG00000017432)	TTC39A (ENSMMMG00000017526)	RNF11 (ENSMMMG00000017539)	C1orf185 (ENSMMMG00000017543)	ENSMMMG00000017564	CDKN2C (ENSMMMG00000017571)	FAF1 (ENSMMMG00000017599)	ENSMMMG00000017613	ELAVL4 (ENSMMMG00000017637)	AGBL4 (ENSMMMG00000017802)	BEND5 (ENSMMMG00000017823)	ENSMMMG00000017834 ##22	SLC5A9 (ENSMMMG00000017850)	ENSMMMG00000017885	ENSMMMG00000017897	ENSMMMG00000017906	ENSMMMG00000017918	ENSMMMG00000017939	TRABD2B (ENSMMMG00000017951)	FOXD2 (ENSMMMG00000017982)	CMPK1 (ENSMMMG00000017986)	STIL (ENSMMMG00000018013)	ENSMMMG00000018085	PDZK1IP1 (ENSMMMG00000018092)	CYP4X1 (ENSMMMG00000018100)	ENSMMMG00000018152	ENSMMMG00000018214
Marmotini_b	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.mb.b	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751.m	ENSGT00950000182917.a.b.a	ENSGT00730000110988.f	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a.a	ENSGT00940000163570.d
Squirrel	MODERN SPECIES	74														BEND5 (ENSSTOG00000006997)	AGBL4 (ENSSTOG00000006972)	SPATA6 (ENSSTOG00000006944) ##22	SLC5A9 (ENSSTOG00000006889)	ENSSTOG00000023325	ENSSTOG00000024899	ENSSTOG00000023168	TRABD2B (ENSSTOG00000028454)	FOXD2 (ENSSTOG00000027420)	FOXE3 (ENSSTOG00000033171)	CMPK1 (ENSSTOG00000007706)	STIL (ENSSTOG00000014333)	TAL1 (ENSSTOG00000008396)	PDZK1IP1 (ENSSTOG00000024038)	CYP4X1 (ENSSTOG00000013556)	ENSSTOG00000015913	ENSSTOG00000028206	ENSSTOG00000013550
Arctic ground squirrel	DUPLICATION
Arctic ground squirrel	MODERN SPECIES	21	NRDC (ENSUPAG00010021802)	ENSUPAG00010021819	ENSUPAG00010022352	EPS15 (ENSUPAG00010022360)	TTC39A (ENSUPAG00010022367)	RNF11 (ENSUPAG00010022375)	C1orf185 (ENSUPAG00010022379)	CDKN2C (ENSUPAG00010022383)	FAF1 (ENSUPAG00010022385)	DMRTA2 (ENSUPAG00010022391)	ELAVL4 (ENSUPAG00010022399)	AGBL4 (ENSUPAG00010022463)	ENSUPAG00010022464	ENSUPAG00010022466	BEND5 (ENSUPAG00010022467)	ENSUPAG00010022468 ##22
Arctic ground squirrel	MODERN SPECIES	467																ENSUPAG00010015913 ##22	SLC5A9 (ENSUPAG00010016240)	ENSUPAG00010016315	ENSUPAG00010016356	ENSUPAG00010016396	ENSUPAG00010016417	TRABD2B (ENSUPAG00010016431)	FOXD2 (ENSUPAG00010016448)	FOXE3 (ENSUPAG00010016452)	CMPK1 (ENSUPAG00010016469)	STIL (ENSUPAG00010016480)	TAL1 (ENSUPAG00010016605)	PDZK1IP1 (ENSUPAG00010016618)	CYP4X1 (ENSUPAG00010016640)
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.nb	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a	ENSGT00940000163570.a	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000001285	ENSHGLG00000002972	ENSHGLG00000003489	ENSHGLG00000000349	ENSHGLG00000001310	ENSHGLG00000034536	FAF1 (ENSHGLG00000000538)	CDKN2C (ENSHGLG00000034852)	DMRTA2 (ENSHGLG00000001509)	ENSHGLG00000037718	ELAVL4 (ENSHGLG00000000485)	ENSHGLG00000043536	ENSHGLG00000039566	ENSHGLG00000034647	ENSHGLG00000011360	SPATA6 (ENSHGLG00000014205) ##22	ENSHGLG00000002670	SLC5A9 (ENSHGLG00000003161)	ENSHGLG00000037697	ENSHGLG00000010693	ENSHGLG00000020805	ENSHGLG00000049793	FOXE3 (ENSHGLG00000034395)	ENSHGLG00000001416	STIL (ENSHGLG00000001713)	ENSHGLG00000001377	TAL1 (ENSHGLG00000047206)	PDZK1IP1 (ENSHGLG00000001653)	CYP4X1 (ENSHGLG00000002395)	ENSHGLG00000050738	ENSHGLG00000008660
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.nb	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.a	ENSGT00940000163570.a	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Guinea pig	MODERN SPECIES	112	ENSCPOG00000031935	TXNDC12 (ENSCPOG00000038607)	RAB3B (ENSCPOG00000007714)	NRDC (ENSCPOG00000010677)	OSBPL9 (ENSCPOG00000010663)	ENSCPOG00000023884	EPS15 (ENSCPOG00000009273)	TTC39A (ENSCPOG00000008138)	RNF11 (ENSCPOG00000031987)	CDKN2C (ENSCPOG00000031293)	FAF1 (ENSCPOG00000001151)	ENSCPOG00000030212	ENSCPOG00000002044	BEND5 (ENSCPOG00000013879)	AGBL4 (ENSCPOG00000013872)	ENSCPOG00000013870 ##22
Hystricomorpha_b	ANCESTRAL SPECIES	54	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.nb	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000163540	ENSGT00940000160589.k	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000163570.a	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886
Degu	MODERN SPECIES	148	EPS15 (ENSODEG00000006324)	TTC39A (ENSODEG00000006441)	ENSODEG00000009489	ENSODEG00000009865	ENSODEG00000006863	ENSODEG00000007244	CDKN2C (ENSODEG00000010220)	FAF1 (ENSODEG00000010743)	DMRTA2 (ENSODEG00000006537)	ELAVL4 (ENSODEG00000006770)	ENSODEG00000007109	AGBL4 (ENSODEG00000009564)	ENSODEG00000019354	ENSODEG00000006988	BEND5 (ENSODEG00000007742)	SPATA6 (ENSODEG00000006382) ##22	SLC5A9 (ENSODEG00000007740)	TRABD2B (ENSODEG00000007567)	ENSODEG00000008585	ENSODEG00000019646	ENSODEG00000006760	ENSODEG00000007423	STIL (ENSODEG00000007478)	TAL1 (ENSODEG00000006602)	PDZK1IP1 (ENSODEG00000008906)	CYP4X1 (ENSODEG00000007165)	ENSODEG00000006889	ENSODEG00000019580	ENSODEG00000006838	CYP4B1 (ENSODEG00000010933)	ENSODEG00000007435
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	171	RAB3B (ENSCLAG00000004516)	NRDC (ENSCLAG00000004925)	OSBPL9 (ENSCLAG00000006250)	ENSCLAG00000009812	ENSCLAG00000004460	EPS15 (ENSCLAG00000005042)	TTC39A (ENSCLAG00000005328)	ENSCLAG00000006939	C1orf185 (ENSCLAG00000007634)	CDKN2C (ENSCLAG00000007763)	FAF1 (ENSCLAG00000008153)	DMRTA2 (ENSCLAG00000008314)	ELAVL4 (ENSCLAG00000005476)	AGBL4 (ENSCLAG00000006735)	BEND5 (ENSCLAG00000007168)	SPATA6 (ENSCLAG00000007504) ##22	SLC5A9 (ENSCLAG00000007839)	TRABD2B (ENSCLAG00000005900)	ENSCLAG00000005985	STIL (ENSCLAG00000006217)	TAL1 (ENSCLAG00000006842)	PDZK1IP1 (ENSCLAG00000007015)	CYP4B1 (ENSCLAG00000007349)	ENSCLAG00000004484	ENSCLAG00000005036	ENSCLAG00000005609	EFCAB14 (ENSCLAG00000005792)	TEX38 (ENSCLAG00000006425)	ATPAF1 (ENSCLAG00000006456)	MOB3C (ENSCLAG00000006684)	MKNK1 (ENSCLAG00000003888)
Long-tailed chinchilla	MODERN SPECIES	285												ENSCLAG00000000788	ENSCLAG00000000870	ENSCLAG00000000962	ENSCLAG00000000428	ENSCLAG00000000465 ##22	ENSCLAG00000000542	ENSCLAG00000000581	ENSCLAG00000000654	CYP2F1 (ENSCLAG00000000994)	EGLN2 (ENSCLAG00000001036)	RAB4B (ENSCLAG00000001366)	MIA (ENSCLAG00000001613)	SNRPA (ENSCLAG00000001744)	ACTMAP (ENSCLAG00000000525)	ITPKC (ENSCLAG00000000187)	COQ8B (ENSCLAG00000000261)	NUMBL (ENSCLAG00000000433)	LTBP4 (ENSCLAG00000000773)	SHKBP1 (ENSCLAG00000000496)	SPTBN4 (ENSCLAG00000000653)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000155173.f.b.b	ENSGT00940000163570
Kangaroo rat	MODERN SPECIES	352					ENSDORG00000002718	Cryz (ENSDORG00000002723)	ENSDORG00000010715	Tnni3k (ENSDORG00000010710)	Fpgt (ENSDORG00000028813)	ENSDORG00000023988	Faf1 (ENSDORG00000015487)	Dmrta2 (ENSDORG00000015486)	Elavl4 (ENSDORG00000012729)	Bend5 (ENSDORG00000005815)	Agbl4 (ENSDORG00000012728)	Spata6 (ENSDORG00000010310) ##22	Slc5a9 (ENSDORG00000010547)	Trabd2b (ENSDORG00000023562)	Foxd2 (ENSDORG00000028126)	Cmpk1 (ENSDORG00000004576)	Stil (ENSDORG00000004571)	Tal1 (ENSDORG00000028266)	Pdzk1ip1 (ENSDORG00000004566)	Cyp4x1 (ENSDORG00000015306)	ENSDORG00000027207	ENSDORG00000008850	ENSDORG00000028283	ENSDORG00000024423	ENSDORG00000002019	Cyp4b1 (ENSDORG00000002018)	Efcab14 (ENSDORG00000006628)
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000155173.f.b.b	ENSGT00940000163570
Lesser Egyptian jerboa	MODERN SPECIES	98	Fgd4 (ENSJJAG00000018423)	ENSJJAG00000013851	Dnm1l (ENSJJAG00000023169)	Yars2 (ENSJJAG00000000641)	Pkp2 (ENSJJAG00000014586)	Syt10 (ENSJJAG00000019374)	Alg10b (ENSJJAG00000019582)	Cdkn2c (ENSJJAG00000020524)	Faf1 (ENSJJAG00000021352)	Dmrta2 (ENSJJAG00000021824)	ENSJJAG00000014086	Elavl4 (ENSJJAG00000023099)	ENSJJAG00000004932	Bend5 (ENSJJAG00000007543)	ENSJJAG00000009281	Spata6 (ENSJJAG00000010848) ##22	Foxd2 (ENSJJAG00000014328)	ENSJJAG00000013211	Pdzk1ip1 (ENSJJAG00000013927)	Cyp4x1 (ENSJJAG00000009131)
Muroidea	ANCESTRAL SPECIES	3	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000155173.f.b.b	ENSGT00940000163570
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000163570.e.a
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a
Mus	ANCESTRAL SPECIES	3	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927
Mouse	MODERN SPECIES	13	Kti12 (ENSMUSG00000073775)	Rab3b (ENSMUSG00000003411)	Nrd1 (ENSMUSG00000053510)	Osbpl9 (ENSMUSG00000028559)	Calr4 (ENSMUSG00000028558)	Eps15 (ENSMUSG00000028552)	Ttc39a (ENSMUSG00000028555)	Rnf11 (ENSMUSG00000028557)	4930522H14Rik (ENSMUSG00000060491)	Cdkn2c (ENSMUSG00000028551)	Faf1 (ENSMUSG00000010517)	Dmrta2 (ENSMUSG00000047143)	Elavl4 (ENSMUSG00000028546)	Agbl4 (ENSMUSG00000061298)	Bend5 (ENSMUSG00000028545)	Spata6 (ENSMUSG00000034401) ##22	Slc5a9 (ENSMUSG00000028544)	Skint8 (ENSMUSG00000078599)	Skint7 (ENSMUSG00000049214)	Skint1 (ENSMUSG00000089773)	Skint4 (ENSMUSG00000055960)	Skint3 (ENSMUSG00000070868)	Skint9 (ENSMUSG00000049972)	Skint2 (ENSMUSG00000034359)	Skint10 (ENSMUSG00000048766)	Skint6 (ENSMUSG00000087194)	Skint5 (ENSMUSG00000078598)	Skint11 (ENSMUSG00000057977)	Trabd2b (ENSMUSG00000070867)	Foxd2 (ENSMUSG00000055210)	Foxe3 (ENSMUSG00000044518)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927
spretus	MODERN SPECIES	13	Kti12 (MGP_SPRETEiJ_G0027246)	Rab3b (MGP_SPRETEiJ_G0027247)	Nrd1 (MGP_SPRETEiJ_G0027248)	Osbpl9 (MGP_SPRETEiJ_G0027249)	Calr4 (MGP_SPRETEiJ_G0027250)	Eps15 (MGP_SPRETEiJ_G0027251)	Ttc39a (MGP_SPRETEiJ_G0027252)	Rnf11 (MGP_SPRETEiJ_G0027253)	4930522H14Rik (MGP_SPRETEiJ_G0027254)	Cdkn2c (MGP_SPRETEiJ_G0027255)	Faf1 (MGP_SPRETEiJ_G0027256)	Dmrta2 (MGP_SPRETEiJ_G0027257)	Elavl4 (MGP_SPRETEiJ_G0027258)	Agbl4 (MGP_SPRETEiJ_G0027259)	Bend5 (MGP_SPRETEiJ_G0027260)	Spata6 (MGP_SPRETEiJ_G0027261) ##22	Slc5a9 (MGP_SPRETEiJ_G0027262)	Skint7 (MGP_SPRETEiJ_G0027263)	MGP_SPRETEiJ_G0027264	Skint1 (MGP_SPRETEiJ_G0027265)	Skint2 (MGP_SPRETEiJ_G0027266)	Skint10 (MGP_SPRETEiJ_G0027267)	MGP_SPRETEiJ_G0027269	Trabd2b (MGP_SPRETEiJ_G0027270)	MGP_SPRETEiJ_G0027271	Foxd2 (MGP_SPRETEiJ_G0027272)	Foxe3 (MGP_SPRETEiJ_G0027273)	Cmpk1 (MGP_SPRETEiJ_G0027274)	Stil (MGP_SPRETEiJ_G0027275)	Tal1 (MGP_SPRETEiJ_G0027276)	Pdzk1ip1 (MGP_SPRETEiJ_G0027277)
Steppe mouse	MODERN SPECIES	2915															ENSMSIG00000021353	Spata6 (ENSMSIG00000021393) ##22	Slc5a9 (ENSMSIG00000021541)	Skint8 (ENSMSIG00000021608)	Skint7 (ENSMSIG00000021632)	Skint1 (ENSMSIG00000021668)	Skint2 (ENSMSIG00000021704)	ENSMSIG00000021762	Skint10 (ENSMSIG00000021774)
Ryukyu mouse	MODERN SPECIES	13	Kti12 (MGP_CAROLIEiJ_G0026277)	Rab3b (MGP_CAROLIEiJ_G0026278)	Nrd1 (MGP_CAROLIEiJ_G0026279)	Osbpl9 (MGP_CAROLIEiJ_G0026280)	MGP_CAROLIEiJ_G0026281	Eps15 (MGP_CAROLIEiJ_G0026282)	Ttc39a (MGP_CAROLIEiJ_G0026283)	Rnf11 (MGP_CAROLIEiJ_G0026284)	4930522H14Rik (MGP_CAROLIEiJ_G0026285)	Cdkn2c (MGP_CAROLIEiJ_G0026286)	Faf1 (MGP_CAROLIEiJ_G0026287)	Dmrta2 (MGP_CAROLIEiJ_G0026288)	Elavl4 (MGP_CAROLIEiJ_G0026289)	Agbl4 (MGP_CAROLIEiJ_G0026290)	Bend5 (MGP_CAROLIEiJ_G0026291)	Spata6 (MGP_CAROLIEiJ_G0026292) ##22	Slc5a9 (MGP_CAROLIEiJ_G0026293)	MGP_CAROLIEiJ_G0026294	Skint1 (MGP_CAROLIEiJ_G0026296)	MGP_CAROLIEiJ_G0026297	Skint10 (MGP_CAROLIEiJ_G0026298)	Trabd2b (MGP_CAROLIEiJ_G0026299)	Foxd2 (MGP_CAROLIEiJ_G0026300)	Foxe3 (MGP_CAROLIEiJ_G0026301)	Cmpk1 (MGP_CAROLIEiJ_G0026302)	Stil (MGP_CAROLIEiJ_G0026303)	Tal1 (MGP_CAROLIEiJ_G0026304)	MGP_CAROLIEiJ_G0026305	Cyp4x1 (MGP_CAROLIEiJ_G0026306)	Cyp4a29 (MGP_CAROLIEiJ_G0026307)	MGP_CAROLIEiJ_G0026308
Shrew mouse	MODERN SPECIES	19	Kti12 (MGP_PahariEiJ_G0028610)	Rab3b (MGP_PahariEiJ_G0028611)	Nrd1 (MGP_PahariEiJ_G0028612)	Osbpl9 (MGP_PahariEiJ_G0028613)	Calr4 (MGP_PahariEiJ_G0028614)	Eps15 (MGP_PahariEiJ_G0028615)	Ttc39a (MGP_PahariEiJ_G0028616)	Rnf11 (MGP_PahariEiJ_G0028617)	4930522H14Rik (MGP_PahariEiJ_G0028618)	Cdkn2c (MGP_PahariEiJ_G0028619)	Faf1 (MGP_PahariEiJ_G0028620)	Dmrta2 (MGP_PahariEiJ_G0028621)	Elavl4 (MGP_PahariEiJ_G0028622)	Agbl4 (MGP_PahariEiJ_G0028623)	Bend5 (MGP_PahariEiJ_G0028624)	Spata6 (MGP_PahariEiJ_G0028625) ##22	Slc5a9 (MGP_PahariEiJ_G0028626)	MGP_PahariEiJ_G0028627	MGP_PahariEiJ_G0028628	Skint1 (MGP_PahariEiJ_G0028629)	MGP_PahariEiJ_G0028630	MGP_PahariEiJ_G0028631	Trabd2b (MGP_PahariEiJ_G0028632)	MGP_PahariEiJ_G0028633	Foxd2 (MGP_PahariEiJ_G0028634)	Foxe3 (MGP_PahariEiJ_G0028635)	Cmpk1 (MGP_PahariEiJ_G0028636)	Stil (MGP_PahariEiJ_G0028637)	Tal1 (MGP_PahariEiJ_G0028638)	MGP_PahariEiJ_G0028639	Cyp4x1 (MGP_PahariEiJ_G0028640)
Rat	MODERN SPECIES	15	Txndc12 (ENSRNOG00000008090)	Kti12 (ENSRNOG00000070073)	Rab3b (ENSRNOG00000008001)	Nrdc (ENSRNOG00000007111)	Osbpl9 (ENSRNOG00000033593)	Calr4 (ENSRNOG00000037710)	Eps15 (ENSRNOG00000010299)	Ttc39a (ENSRNOG00000047573)	Rnf11 (ENSRNOG00000057589)	LOC689589 (ENSRNOG00000009138)	Cdkn2c (ENSRNOG00000008956)	Faf1 (ENSRNOG00000008523)	Dmrta2 (ENSRNOG00000068045)	Elavl4 (ENSRNOG00000023601)	Bend5 (ENSRNOG00000008025)	Spata6 (ENSRNOG00000007568) ##22	Slc5a9 (ENSRNOG00000042950)	Skint8 (ENSRNOG00000037680)	Skint1 (ENSRNOG00000043194)	Skint4 (ENSRNOG00000042047)	ENSRNOG00000063827	ENSRNOG00000067562	ENSRNOG00000063781	ENSRNOG00000068199	LOC100911818 (ENSRNOG00000067091)	Skint10 (ENSRNOG00000022988)	Trabd2b (ENSRNOG00000029141)	Foxd2 (ENSRNOG00000007759)	Foxe3 (ENSRNOG00000007770)	Cmpk1 (ENSRNOG00000007775)	Stil (ENSRNOG00000057760)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000163570.e.b
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00960000191437	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.f.b.a	ENSGT00940000163570.e.a
Northern American deer mouse	MODERN SPECIES	11	Nrd1 (ENSPEMG00000021266)	Osbpl9 (ENSPEMG00000023026)	Calr4 (ENSPEMG00000015759)	Eps15 (ENSPEMG00000017501)	ENSPEMG00000029734	Ttc39a (ENSPEMG00000021737)	Rnf11 (ENSPEMG00000028550)	4930522H14Rik (ENSPEMG00000020496)	ENSPEMG00000030255	Cdkn2c (ENSPEMG00000029349)	Faf1 (ENSPEMG00000022043)	Dmrta2 (ENSPEMG00000028558)	Elavl4 (ENSPEMG00000021058)	Agbl4 (ENSPEMG00000023297)	Bend5 (ENSPEMG00000022292)	Spata6 (ENSPEMG00000022120) ##22	Slc5a9 (ENSPEMG00000021770)	ENSPEMG00000021177	Skint1 (ENSPEMG00000011155)	ENSPEMG00000021558	ENSPEMG00000030740	ENSPEMG00000026129	ENSPEMG00000023162	ENSPEMG00000008143	Trabd2b (ENSPEMG00000021574)	Foxe3 (ENSPEMG00000025577)	Cmpk1 (ENSPEMG00000021852)	Stil (ENSPEMG00000023881)	Tal1 (ENSPEMG00000024420)	ENSPEMG00000022028	Cyp4x1 (ENSPEMG00000021657)
Prairie vole	MODERN SPECIES	1	Rab3b (ENSMOCG00000013133)	Nrd1 (ENSMOCG00000008359)	Osbpl9 (ENSMOCG00000017056)	ENSMOCG00000017309	Calr4 (ENSMOCG00000002656)	Eps15 (ENSMOCG00000004099)	Ttc39a (ENSMOCG00000009418)	Rnf11 (ENSMOCG00000014218)	4930522H14Rik (ENSMOCG00000014783)	Cdkn2c (ENSMOCG00000008425)	Faf1 (ENSMOCG00000016469)	Dmrta2 (ENSMOCG00000018451)	Elavl4 (ENSMOCG00000010309)	Agbl4 (ENSMOCG00000016733)	Bend5 (ENSMOCG00000003340)	ENSMOCG00000021709 ##22	Slc5a9 (ENSMOCG00000022328)	ENSMOCG00000019561	ENSMOCG00000003588	ENSMOCG00000013586	ENSMOCG00000012467	Trabd2b (ENSMOCG00000002510)	Foxd2 (ENSMOCG00000002875)	Foxe3 (ENSMOCG00000008738)	Cmpk1 (ENSMOCG00000019310)	Stil (ENSMOCG00000001995)	Tal1 (ENSMOCG00000015608)	Pdzk1ip1 (ENSMOCG00000021926)	Cyp4x1 (ENSMOCG00000021415)	ENSMOCG00000020038	ENSMOCG00000001637
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000163570.e.b	ENSGT00940000155173.f.b.b
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	648	ENSMAUG00000010138	Nrd1 (ENSMAUG00000012215)	Osbpl9 (ENSMAUG00000011321)	Calr4 (ENSMAUG00000016786)	Eps15 (ENSMAUG00000021661)	Ttc39a (ENSMAUG00000013412)	Rnf11 (ENSMAUG00000014680)	4930522H14Rik (ENSMAUG00000018143)	Cdkn2c (ENSMAUG00000019466)	Faf1 (ENSMAUG00000011844)	Dmrta2 (ENSMAUG00000012169)	Elavl4 (ENSMAUG00000021566)	Bend5 (ENSMAUG00000007838)	Agbl4 (ENSMAUG00000020446)	ENSMAUG00000021230 ##22	ENSMAUG00000008507 ##22	Slc5a9 (ENSMAUG00000016902)	ENSMAUG00000020229	ENSMAUG00000008748	ENSMAUG00000004245	ENSMAUG00000013879	Trabd2b (ENSMAUG00000006510)	ENSMAUG00000009858	Foxd2 (ENSMAUG00000010964)	Foxe3 (ENSMAUG00000010093)	ENSMAUG00000019205	Stil (ENSMAUG00000018720)	Tal1 (ENSMAUG00000001565)	Pdzk1ip1 (ENSMAUG00000019882)	Cyp4x1 (ENSMAUG00000011941)	ENSMAUG00000021832
Golden Hamster	MODERN SPECIES	648	Rab3b (ENSMAUG00000012473)	ENSMAUG00000010138	Nrd1 (ENSMAUG00000012215)	Osbpl9 (ENSMAUG00000011321)	Calr4 (ENSMAUG00000016786)	Eps15 (ENSMAUG00000021661)	Ttc39a (ENSMAUG00000013412)	Rnf11 (ENSMAUG00000014680)	4930522H14Rik (ENSMAUG00000018143)	Cdkn2c (ENSMAUG00000019466)	Faf1 (ENSMAUG00000011844)	Dmrta2 (ENSMAUG00000012169)	Elavl4 (ENSMAUG00000021566)	Bend5 (ENSMAUG00000007838)	Agbl4 (ENSMAUG00000020446)	ENSMAUG00000021230 ##22	ENSMAUG00000008507 ##22	Slc5a9 (ENSMAUG00000016902)	ENSMAUG00000020229	ENSMAUG00000008748	ENSMAUG00000004245	ENSMAUG00000013879	Trabd2b (ENSMAUG00000006510)	ENSMAUG00000009858	Foxd2 (ENSMAUG00000010964)	Foxe3 (ENSMAUG00000010093)	ENSMAUG00000019205	Stil (ENSMAUG00000018720)	Tal1 (ENSMAUG00000001565)	Pdzk1ip1 (ENSMAUG00000019882)	Cyp4x1 (ENSMAUG00000011941)
Chinese hamster chok1gshd	MODERN SPECIES	111	Txndc12 (ENSCGRG00001019312)	Rab3b (ENSCGRG00001013853)	Nrd1 (ENSCGRG00001022296)	Osbpl9 (ENSCGRG00001021068)	Calr4 (ENSCGRG00001011514)	Eps15 (ENSCGRG00001009890)	Ttc39a (ENSCGRG00001020495)	Rnf11 (ENSCGRG00001018595)	4930522H14Rik (ENSCGRG00001016306)	Cdkn2c (ENSCGRG00001013915)	Faf1 (ENSCGRG00001012451)	Dmrta2 (ENSCGRG00001010624)	Elavl4 (ENSCGRG00001020348)	Bend5 (ENSCGRG00001018629)	Agbl4 (ENSCGRG00001017075)	Spata6 (ENSCGRG00001001168) ##22	Slc5a9 (ENSCGRG00001019511)	ENSCGRG00001023213	ENSCGRG00001021660	ENSCGRG00001021187	ENSCGRG00001018354	Trabd2b (ENSCGRG00001016130)	ENSCGRG00001022727	Foxd2 (ENSCGRG00001010484)	Foxe3 (ENSCGRG00001005301)	Cmpk1 (ENSCGRG00001016283)	Stil (ENSCGRG00001012804)	Tal1 (ENSCGRG00001023671)	Pdzk1ip1 (ENSCGRG00001022750)	Cyp4x1 (ENSCGRG00001021846)	ENSCGRG00001019487
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	780								Cdkn2c (ENSNGAG00000001881)	ENSNGAG00000023426	Faf1 (ENSNGAG00000015466)	Dmrta2 (ENSNGAG00000010314)	Elavl4 (ENSNGAG00000023123)	ENSNGAG00000020205	Bend5 (ENSNGAG00000016052)	ENSNGAG00000011566	ENSNGAG00000006899 ##22
Upper Galilee mountains blind mole rat	MODERN SPECIES	1667																ENSNGAG00000016972 ##22
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000163504
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Suina	ANCESTRAL SPECIES	27	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b.c	ENSGT00940000160927	ENSGT00940000155173.g.a	ENSGT00940000154660.b.d.b	ENSGT00940000155173.g.b	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
Chacoan peccary	MODERN SPECIES	54	ENSCWAG00000003778	RAB3B (ENSCWAG00000003795)	NRDC (ENSCWAG00000003843)	OSBPL9 (ENSCWAG00000004180)	ENSCWAG00000004705	EPS15 (ENSCWAG00000004768)	TTC39A (ENSCWAG00000004869)	RNF11 (ENSCWAG00000005303)	C1orf185 (ENSCWAG00000005324)	CDKN2C (ENSCWAG00000005386)	FAF1 (ENSCWAG00000005411)	DMRTA2 (ENSCWAG00000005466)	ELAVL4 (ENSCWAG00000005560)	AGBL4 (ENSCWAG00000006528)	BEND5 (ENSCWAG00000006694)	SPATA6 (ENSCWAG00000006748) ##22	SLC5A9 (ENSCWAG00000006856)	TRABD2B (ENSCWAG00000007013)	FOXD2 (ENSCWAG00000007046)	FOXE3 (ENSCWAG00000007053)	CMPK1 (ENSCWAG00000007073)	STIL (ENSCWAG00000007144)	TAL1 (ENSCWAG00000007586)	ENSCWAG00000007601	ENSCWAG00000007625	ENSCWAG00000007685	ENSCWAG00000007782	ENSCWAG00000007884	ENSCWAG00000008145	CYP4B1 (ENSCWAG00000008498)	EFCAB14 (ENSCWAG00000008901)
Pig	MODERN SPECIES	14	ENSSSCG00000059473	EPS15 (ENSSSCG00000003872)	ENSSSCG00000055459	TTC39A (ENSSSCG00000003875)	RNF11 (ENSSSCG00000031172)	C1orf185 (ENSSSCG00000031188)	CDKN2C (ENSSSCG00000003876)	FAF1 (ENSSSCG00000003877)	ENSSSCG00000049732	DMRTA2 (ENSSSCG00000030552)	ELAVL4 (ENSSSCG00000037291)	ENSSSCG00000052381	ENSSSCG00000049367	BEND5 (ENSSSCG00000063412)	ENSSSCG00000031300	SPATA6 (ENSSSCG00000003881) ##22	SLC5A9 (ENSSSCG00000003882)	TRABD2B (ENSSSCG00000037318)	FOXD2 (ENSSSCG00000034880)	FOXE3 (ENSSSCG00000003884)	CMPK1 (ENSSSCG00000003885)	STIL (ENSSSCG00000003888)	TAL1 (ENSSSCG00000058056)	ENSSSCG00000020872	ENSSSCG00000056639	ENSSSCG00000031778	ENSSSCG00000024129	ENSSSCG00000003892	CYP4A24 (ENSSSCG00000062158)	ENSSSCG00000062325	ENSSSCG00000061684
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Camelidae	ANCESTRAL SPECIES	11	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173	ENSGT00940000160927	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886	ENSGT00400000024146
Arabian camel	MODERN SPECIES	4	ZFYVE9 (ENSCDRG00005006088)	BTF3L4 (ENSCDRG00005006016)	TXNDC12 (ENSCDRG00005005982)	RAB3B (ENSCDRG00005005964)	NRDC (ENSCDRG00005005602)	OSBPL9 (ENSCDRG00005005422)	EPS15 (ENSCDRG00005005246)	TTC39A (ENSCDRG00005004896)	C1orf185 (ENSCDRG00005004794)	CDKN2C (ENSCDRG00005004767)	FAF1 (ENSCDRG00005004702)	DMRTA2 (ENSCDRG00005004641)	ELAVL4 (ENSCDRG00005004051)	BEND5 (ENSCDRG00005003960)	AGBL4 (ENSCDRG00005003837)	SPATA6 (ENSCDRG00005003747) ##22	ENSCDRG00005003726	SLC5A9 (ENSCDRG00005003621)	TRABD2B (ENSCDRG00005003535)	CMPK1 (ENSCDRG00005019485)	STIL (ENSCDRG00005019454)	TAL1 (ENSCDRG00005019418)	ENSCDRG00005019396	ENSCDRG00005019371	CYP4X1 (ENSCDRG00005019322)	EFCAB14 (ENSCDRG00005019273)	TEX38 (ENSCDRG00005019244)	ATPAF1 (ENSCDRG00005019231)	MOB3C (ENSCDRG00005019211)	MKNK1 (ENSCDRG00005019138)	KNCN (ENSCDRG00005019056)
Alpaca	MODERN SPECIES	391																SPATA6 (ENSVPAG00000009850) ##22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d	ENSGT00390000011196
Cetacea	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.j	ENSGT00940000160927	ENSGT00940000155173.i.a	ENSGT00950000182958.a.b.b.j.l	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Odontoceti	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000155339.r	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.i.a	ENSGT00940000160927	ENSGT00940000155173.j	ENSGT00950000182958.a.b.b.j.l	ENSGT00390000011196	ENSGT00390000016446
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000155339.r	ENSGT00940000161273	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.i.a	ENSGT00940000160927	ENSGT00940000155173.j.a	ENSGT00390000011196	ENSGT00390000016446
Dolphin	MODERN SPECIES	2874													ELAVL4 (ENSTTRG00000012441)	BEND5 (ENSTTRG00000012397)	AGBL4 (ENSTTRG00000012384)	SPATA6 (ENSTTRG00000012366) ##22	SLC5A9 (ENSTTRG00000012358)	ENSTTRG00000012352
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000155339.r	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.i.a	ENSGT00940000163504	ENSGT00940000161441.c.b.a	ENSGT00940000155173.i.b	ENSGT00390000011196	ENSGT00390000016446
Vaquita	MODERN SPECIES		ENSPSNG00000012757	NRDC (ENSPSNG00000012358)	ENSPSNG00000011761	EPS15 (ENSPSNG00000011562)	TTC39A (ENSPSNG00000010892)	RNF11 (ENSPSNG00000010799)	C1orf185 (ENSPSNG00000010619)	ENSPSNG00000010600	CDKN2C (ENSPSNG00000010560)	FAF1 (ENSPSNG00000010473)	DMRTA2 (ENSPSNG00000010437)	ELAVL4 (ENSPSNG00000009710)	ENSPSNG00000009540	BEND5 (ENSPSNG00000009518)	AGBL4 (ENSPSNG00000009355)	SPATA6 (ENSPSNG00000009229) ##22	SLC5A9 (ENSPSNG00000009041)	ENSPSNG00000008987	ENSPSNG00000008955	TRABD2B (ENSPSNG00000008890)	FOXD2 (ENSPSNG00000008853)	FOXE3 (ENSPSNG00000008840)	CMPK1 (ENSPSNG00000008760)	STIL (ENSPSNG00000008673)	TAL1 (ENSPSNG00000008617)	PDZK1IP1 (ENSPSNG00000008584)	ENSPSNG00000008499	ENSPSNG00000008408	ENSPSNG00000008156	ENSPSNG00000007825	EFCAB14 (ENSPSNG00000007725)
Monodontidae	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000155339.r	ENSGT00940000161273	ENSGT00940000153412.A.a.c.e.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000163504	ENSGT00940000161441.c.b.a	ENSGT00940000155173.i.b	ENSGT00390000011196	ENSGT00390000016446
Narwhal	MODERN SPECIES	304	ENSMMNG00015015285	NRDC (ENSMMNG00015015338)	OSBPL9 (ENSMMNG00015015491)	ENSMMNG00015015722	EPS15 (ENSMMNG00015015790)	TTC39A (ENSMMNG00015015942)	RNF11 (ENSMMNG00015016177)	ENSMMNG00015016200	CDKN2C (ENSMMNG00015016226)	FAF1 (ENSMMNG00015016261)	DMRTA2 (ENSMMNG00015016305)	ELAVL4 (ENSMMNG00015016468)	AGBL4 (ENSMMNG00015016854)	ENSMMNG00015017042	BEND5 (ENSMMNG00015017067)	SPATA6 (ENSMMNG00015017114) ##22	SLC5A9 (ENSMMNG00015017189)	ENSMMNG00015017223	TRABD2B (ENSMMNG00015017248)	ENSMMNG00015017274	FOXD2 (ENSMMNG00015017290)	FOXE3 (ENSMMNG00015017301)	CMPK1 (ENSMMNG00015017341)	STIL (ENSMMNG00015017497)	TAL1 (ENSMMNG00015017573)	PDZK1IP1 (ENSMMNG00015017600)	ENSMMNG00015017646	ENSMMNG00015017692	ENSMMNG00015017717	EFCAB14 (ENSMMNG00015017756)	TEX38 (ENSMMNG00015017799)
Beluga whale	MODERN SPECIES	74	NRDC (ENSDLEG00000017921)	OSBPL9 (ENSDLEG00000016465)	ENSDLEG00000016334	EPS15 (ENSDLEG00000016250)	TTC39A (ENSDLEG00000016187)	RNF11 (ENSDLEG00000016174)	C1orf185 (ENSDLEG00000016132)	CDKN2C (ENSDLEG00000016125)	FAF1 (ENSDLEG00000016028)	DMRTA2 (ENSDLEG00000016008)	ELAVL4 (ENSDLEG00000015258)	ENSDLEG00000015238	ENSDLEG00000015227	BEND5 (ENSDLEG00000015199)	AGBL4 (ENSDLEG00000015168)	SPATA6 (ENSDLEG00000015119) ##22	SLC5A9 (ENSDLEG00000015091)	ENSDLEG00000015073	ENSDLEG00000015069	TRABD2B (ENSDLEG00000015057)	ENSDLEG00000015052	FOXD2 (ENSDLEG00000015047)	FOXE3 (ENSDLEG00000015041)	CMPK1 (ENSDLEG00000014989)	STIL (ENSDLEG00000014810)	TAL1 (ENSDLEG00000014787)	PDZK1IP1 (ENSDLEG00000014775)	ENSDLEG00000014649	ENSDLEG00000014626	EFCAB14 (ENSDLEG00000014585)	TEX38 (ENSDLEG00000014565)
Sperm whale	MODERN SPECIES	15	NRDC (ENSPCTG00005010107)	OSBPL9 (ENSPCTG00005010621)	ENSPCTG00005011404	EPS15 (ENSPCTG00005011544)	TTC39A (ENSPCTG00005011838)	RNF11 (ENSPCTG00005012191)	ENSPCTG00005012230	CDKN2C (ENSPCTG00005012278)	FAF1 (ENSPCTG00005012310)	ENSPCTG00005012390	ELAVL4 (ENSPCTG00005012489)	ENSPCTG00005013384	ENSPCTG00005013401	BEND5 (ENSPCTG00005013421)	AGBL4 (ENSPCTG00005013528)	SPATA6 (ENSPCTG00005013649) ##22	SLC5A9 (ENSPCTG00005013780)	ENSPCTG00005014378	ENSPCTG00005014432	FOXE3 (ENSPCTG00005014461)	CMPK1 (ENSPCTG00005014484)	STIL (ENSPCTG00005014632)	TAL1 (ENSPCTG00005014754)	PDZK1IP1 (ENSPCTG00005014810)	ENSPCTG00005014892	ENSPCTG00005015607	CYP4B1 (ENSPCTG00005016063)	ENSPCTG00005016599	ENSPCTG00005016621	EFCAB14 (ENSPCTG00005016666)	TEX38 (ENSPCTG00005016811)
Blue whale	MODERN SPECIES		TXNDC12 (ENSBMSG00010006006)	RAB3B (ENSBMSG00010005996)	NRDC (ENSBMSG00010005952)	ENSBMSG00010005842	EPS15 (ENSBMSG00010005767)	TTC39A (ENSBMSG00010005702)	RNF11 (ENSBMSG00010005680)	C1orf185 (ENSBMSG00010005668)	CDKN2C (ENSBMSG00010005658)	FAF1 (ENSBMSG00010005636)	DMRTA2 (ENSBMSG00010005622)	ELAVL4 (ENSBMSG00010005482)	ENSBMSG00010005423	BEND5 (ENSBMSG00010005413)	AGBL4 (ENSBMSG00010005358)	SPATA6 (ENSBMSG00010005335) ##22	SLC5A9 (ENSBMSG00010005258)	TRABD2B (ENSBMSG00010005224)	ENSBMSG00010005215	FOXE3 (ENSBMSG00010005194)	CMPK1 (ENSBMSG00010005177)	STIL (ENSBMSG00010005150)	TAL1 (ENSBMSG00010005132)	PDZK1IP1 (ENSBMSG00010005121)	ENSBMSG00010005054	ENSBMSG00010005028	ENSBMSG00010005002	ENSBMSG00010004944	ENSBMSG00010004923	ENSBMSG00010004918	EFCAB14 (ENSBMSG00010004906)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.a.a.b.b
Yarkand deer	MODERN SPECIES	12	NRDC (ENSCHYG00000012147)	ENSCHYG00000016488	ENSCHYG00000016631	ENSCHYG00000018015	EPS15 (ENSCHYG00000018363)	TTC39A (ENSCHYG00000019043)	RNF11 (ENSCHYG00000020010)	C1orf185 (ENSCHYG00000020169)	CDKN2C (ENSCHYG00000020293)	FAF1 (ENSCHYG00000020360)	ENSCHYG00000020992	ELAVL4 (ENSCHYG00000021125)	AGBL4 (ENSCHYG00000021988)	ENSCHYG00000022139	BEND5 (ENSCHYG00000022182)	SPATA6 (ENSCHYG00000022292) ##22	SLC5A9 (ENSCHYG00000022514)	ENSCHYG00000022669	ENSCHYG00000022715	ENSCHYG00000022779	TRABD2B (ENSCHYG00000022894)	ENSCHYG00000022932	FOXD2 (ENSCHYG00000022949)	CMPK1 (ENSCHYG00000022970)	STIL (ENSCHYG00000023044)	TAL1 (ENSCHYG00000023140)	PDZK1IP1 (ENSCHYG00000023171)	CYP4X1 (ENSCHYG00000023196)	ENSCHYG00000023298	ENSCHYG00000023374	ENSCHYG00000023627
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.a.a.b.b
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.b	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.a
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.q	ENSGT00960000192687	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.q.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.a.a.b.a	ENSGT00940000155173.k.a.a.a	ENSGT00940000161441.d	ENSGT00390000011196
Bos	ANCESTRAL SPECIES		ENSGT00940000155026	ENSGT00940000154690.q	ENSGT00960000192687	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.q.a	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000155173.k.a.a.a	ENSGT00940000161441.d
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690.q	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.q.a	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000153095.g.b.b.d.b	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000155173.k.a.a.b.a.a	ENSGT00940000155173.k.a.a.a
Cow	MODERN SPECIES	22	NRDC (ENSBTAG00000021174)	OSBPL9 (ENSBTAG00000021170)	EPS15 (ENSBTAG00000005542)	ENSBTAG00000048722	TTC39A (ENSBTAG00000002451)	RNF11 (ENSBTAG00000054545)	C3H1orf185 (ENSBTAG00000009674)	CDKN2C (ENSBTAG00000011059)	FAF1 (ENSBTAG00000014482)	DMRTA2 (ENSBTAG00000010414)	ELAVL4 (ENSBTAG00000021046)	ENSBTAG00000054981	ENSBTAG00000053607	BEND5 (ENSBTAG00000009209)	ENSBTAG00000012722	SPATA6 (ENSBTAG00000003128) ##22	SLC5A9 (ENSBTAG00000014225)	ENSBTAG00000054583	SKINT1 (ENSBTAG00000009192)	TRABD2B (ENSBTAG00000054324)	FOXD2 (ENSBTAG00000045643)	FOXE3 (ENSBTAG00000051575)	CMPK1 (ENSBTAG00000019956)	STIL (ENSBTAG00000017844)	TAL1 (ENSBTAG00000005029)	PDZK1IP1 (ENSBTAG00000002555)	CYP4X1 (ENSBTAG00000015647)	CYP4A11 (ENSBTAG00000037890)	CYP4A59 (ENSBTAG00000000229)	CYP4A22 (ENSBTAG00000013481)	ENSBTAG00000050746
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005014220	OSBPL9 (ENSBIXG00005014176)	EPS15 (ENSBIXG00005013837)	TTC39A (ENSBIXG00005013555)	RNF11 (ENSBIXG00005013258)	C1orf185 (ENSBIXG00005013246)	CDKN2C (ENSBIXG00005013218)	ENSBIXG00005013185	ENSBIXG00005013142	DMRTA2 (ENSBIXG00005013129)	ENSBIXG00005013121	ELAVL4 (ENSBIXG00005013087)	AGBL4 (ENSBIXG00005012945)	ENSBIXG00005001430	BEND5 (ENSBIXG00005012833)	SPATA6 (ENSBIXG00005012777) ##22	ENSBIXG00005012739	SLC5A9 (ENSBIXG00005012722)	ENSBIXG00005012658	TRABD2B (ENSBIXG00005012610)	FOXE3 (ENSBIXG00005012567)	CMPK1 (ENSBIXG00005012554)	STIL (ENSBIXG00005001365)	TAL1 (ENSBIXG00005001347)	PDZK1IP1 (ENSBIXG00005012472)	CYP4X1 (ENSBIXG00005012436)	ENSBIXG00005012345	CYP4B1 (ENSBIXG00005001270)	EFCAB14 (ENSBIXG00005012188)	TEX38 (ENSBIXG00005012152)	ATPAF1 (ENSBIXG00005012121)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000155026	ENSGT00940000154690.q	ENSGT00960000192687	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.q.a	ENSGT01100000263481.n.a.b.a.b.a.a.a.a.a.b.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00990000203553.c.a.a.a.b	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT01100000263480.a.b.b.a.b.b.b.a.a.a.b	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.a.a.b.a.b	ENSGT00940000155173.k.a.a.a	ENSGT00940000161441.d	ENSGT00390000011196
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	676	NRDC (ENSBMUG00000016703)	ENSBMUG00000016543	ENSBMUG00000016376	EPS15 (ENSBMUG00000016038)	TTC39A (ENSBMUG00000015807)	RNF11 (ENSBMUG00000015733)	C1orf185 (ENSBMUG00000015719)	CDKN2C (ENSBMUG00000015705)	FAF1 (ENSBMUG00000015674)	DMRTA2 (ENSBMUG00000015624)	ELAVL4 (ENSBMUG00000015604)	ENSBMUG00000015445	ENSBMUG00000015436	BEND5 (ENSBMUG00000015425)	AGBL4 (ENSBMUG00000015405)	ENSBMUG00000015342 ##22	ENSBMUG00000015327 ##22
Wild yak	MODERN SPECIES	676	ENSBMUG00000016543	ENSBMUG00000016376	EPS15 (ENSBMUG00000016038)	TTC39A (ENSBMUG00000015807)	RNF11 (ENSBMUG00000015733)	C1orf185 (ENSBMUG00000015719)	CDKN2C (ENSBMUG00000015705)	FAF1 (ENSBMUG00000015674)	DMRTA2 (ENSBMUG00000015624)	ELAVL4 (ENSBMUG00000015604)	ENSBMUG00000015445	ENSBMUG00000015436	BEND5 (ENSBMUG00000015425)	AGBL4 (ENSBMUG00000015405)	ENSBMUG00000015342 ##22	ENSBMUG00000015327 ##22
Domestic yak	MODERN SPECIES	22	EPS15 (ENSBGRG00000006427)	TTC39A (ENSBGRG00000006890)	RNF11 (ENSBGRG00000007453)	ENSBGRG00000007489	C1orf185 (ENSBGRG00000007509)	ENSBGRG00000007678	ENSBGRG00000007699	CDKN2C (ENSBGRG00000007727)	FAF1 (ENSBGRG00000007790)	ENSBGRG00000008184	DMRTA2 (ENSBGRG00000008234)	ENSBGRG00000008263	ELAVL4 (ENSBGRG00000008303)	BEND5 (ENSBGRG00000000244)	ENSBGRG00000000329	SPATA6 (ENSBGRG00000000361) ##22	ENSBGRG00000000443	SLC5A9 (ENSBGRG00000000471)	ENSBGRG00000000634	ENSBGRG00000000659	TRABD2B (ENSBGRG00000000715)	FOXD2 (ENSBGRG00000000734)	CMPK1 (ENSBGRG00000000768)	STIL (ENSBGRG00000000847)	TAL1 (ENSBGRG00000000873)	PDZK1IP1 (ENSBGRG00000000884)	CYP4X1 (ENSBGRG00000000906)	ENSBGRG00000000946	ENSBGRG00000000995	ENSBGRG00000001400	CYP4B1 (ENSBGRG00000001457)
American bison	MODERN SPECIES	2971										CDKN2C (ENSBBBG00000009704)	FAF1 (ENSBBBG00000009713)	ELAVL4 (ENSBBBG00000009727)	ENSBBBG00000001599	BEND5 (ENSBBBG00000009734)	AGBL4 (ENSBBBG00000009737)	SPATA6 (ENSBBBG00000009751) ##22	SLC5A9 (ENSBBBG00000009762)	ENSBBBG00000009039	ENSBBBG00000009765	ENSBBBG00000009768	TRABD2B (ENSBBBG00000009775)	CMPK1 (ENSBBBG00000009782)	STIL (ENSBBBG00000001632)	ENSBBBG00000001633	PDZK1IP1 (ENSBBBG00000009801)	ENSBBBG00000009802	CYP4X1 (ENSBBBG00000008137)	ENSBBBG00000007113	ENSBBBG00000009830	CYP4B1 (ENSBBBG00000009841)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000162562.A	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.k.b	ENSGT00940000155173.k.a.a.b.a.d	ENSGT00940000155173.k.a.a.b.a.c	ENSGT00940000155173.k.a.a.b.b	ENSGT00940000155173.k.a.a.a
Goat	MODERN SPECIES	22	RAB3B (ENSCHIG00000018985)	ENSCHIG00000015938	NRDC (ENSCHIG00000018703)	ENSCHIG00000026722	ENSCHIG00000011084	EPS15 (ENSCHIG00000014467)	TTC39A (ENSCHIG00000004432)	RNF11 (ENSCHIG00000015466)	C1orf185 (ENSCHIG00000024707)	CDKN2C (ENSCHIG00000018497)	FAF1 (ENSCHIG00000023469)	DMRTA2 (ENSCHIG00000014219)	ELAVL4 (ENSCHIG00000002038)	BEND5 (ENSCHIG00000021731)	ENSCHIG00000002488	SPATA6 (ENSCHIG00000022098) ##22	SLC5A9 (ENSCHIG00000008499)	ENSCHIG00000016345	TRABD2B (ENSCHIG00000016346)	ENSCHIG00000008212	FOXD2 (ENSCHIG00000000964)	FOXE3 (ENSCHIG00000005171)	CMPK1 (ENSCHIG00000009857)	STIL (ENSCHIG00000018306)	TAL1 (ENSCHIG00000023704)	PDZK1IP1 (ENSCHIG00000010100)	CYP4X1 (ENSCHIG00000017002)	CYP4A42 (ENSCHIG00000025289)	ENSCHIG00000022081	ENSCHIG00000002358	ENSCHIG00000017193
Rambouillet Sheep	MODERN SPECIES		NRDC (ENSOARG00020006154)	OSBPL9 (ENSOARG00020005123)	ENSOARG00020005031	EPS15 (ENSOARG00020004420)	TTC39A (ENSOARG00020004078)	RNF11 (ENSOARG00020004026)	C1orf185 (ENSOARG00020003970)	CDKN2C (ENSOARG00020003945)	FAF1 (ENSOARG00020003507)	DMRTA2 (ENSOARG00020003462)	ENSOARG00020002841	ENSOARG00020002674	ENSOARG00020002635	ENSOARG00020002560	ENSOARG00020002510	SPATA6 (ENSOARG00020002472) ##22	SLC5A9 (ENSOARG00020002431)	ENSOARG00020002415	TRABD2B (ENSOARG00020002393)	FOXD2 (ENSOARG00020002380)	FOXE3 (ENSOARG00020002373)	CMPK1 (ENSOARG00020002350)	STIL (ENSOARG00020002323)	TAL1 (ENSOARG00020002312)	PDZK1IP1 (ENSOARG00020002299)	CYP4X1 (ENSOARG00020002290)	ENSOARG00020001814	ENSOARG00020001738	ENSOARG00020001546	ENSOARG00020001482	ENSOARG00020001350
Siberian musk deer	MODERN SPECIES	340	NRDC (ENSMMSG00000010652)	OSBPL9 (ENSMMSG00000011045)	ENSMMSG00000011598	EPS15 (ENSMMSG00000011662)	TTC39A (ENSMMSG00000012294)	RNF11 (ENSMMSG00000012629)	C1orf185 (ENSMMSG00000012641)	ENSMMSG00000012725	CDKN2C (ENSMMSG00000012734)	FAF1 (ENSMMSG00000012758)	ENSMMSG00000012776	DMRTA2 (ENSMMSG00000012786)	ELAVL4 (ENSMMSG00000012846)	AGBL4 (ENSMMSG00000013891)	BEND5 (ENSMMSG00000013981)	SPATA6 (ENSMMSG00000014025) ##22	SLC5A9 (ENSMMSG00000014113)	ENSMMSG00000014251	ENSMMSG00000014278	TRABD2B (ENSMMSG00000014286)	FOXD2 (ENSMMSG00000014302)	FOXE3 (ENSMMSG00000014313)	ENSMMSG00000014328	STIL (ENSMMSG00000014379)	TAL1 (ENSMMSG00000014528)	PDZK1IP1 (ENSMMSG00000014540)	CYP4X1 (ENSMMSG00000014557)	ENSMMSG00000014713	ENSMMSG00000017845	ENSMMSG00000017943	ENSMMSG00000018047
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Carnivora	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Felidae	ANCESTRAL SPECIES	10	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.a.b	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.b	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
Panthera	ANCESTRAL SPECIES	4	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.a.b	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.b	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
Tiger	MODERN SPECIES	100	RAB3B (ENSPTIG00000010883)	NRDC (ENSPTIG00000011593)	ENSPTIG00000014000	OSBPL9 (ENSPTIG00000014514)	EPS15 (ENSPTIG00000021361)	TTC39A (ENSPTIG00000006822)	RNF11 (ENSPTIG00000012147)	C1orf185 (ENSPTIG00000012429)	CDKN2C (ENSPTIG00000013155)	FAF1 (ENSPTIG00000014264)	ELAVL4 (ENSPTIG00000016727)	ENSPTIG00000019852	ENSPTIG00000005063	BEND5 (ENSPTIG00000020902)	AGBL4 (ENSPTIG00000021182)	SPATA6 (ENSPTIG00000021470) ##22	SLC5A9 (ENSPTIG00000007011)	TRABD2B (ENSPTIG00000009870)	CMPK1 (ENSPTIG00000011122)	STIL (ENSPTIG00000011691)	TAL1 (ENSPTIG00000017616)	PDZK1IP1 (ENSPTIG00000018010)	CYP4X1 (ENSPTIG00000018303)	CYP4A37 (ENSPTIG00000018827)	CYP4A106 (ENSPTIG00000020491)	ENSPTIG00000020880	CYP4B1 (ENSPTIG00000021254)	EFCAB14 (ENSPTIG00000021900)	TEX38 (ENSPTIG00000021969)	ATPAF1 (ENSPTIG00000022016)	MOB3C (ENSPTIG00000002465)
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00950000182922.a.a.a.b.a.b.a.a.c.a.a	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.a.b	ENSGT00940000155173.m.a.a	ENSGT00940000155173.m.b	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
leopard	MODERN SPECIES	16	ENSPPRG00000003302	OSBPL9 (ENSPPRG00000002600)	EPS15 (ENSPPRG00000014230)	ENSPPRG00000011797	TTC39A (ENSPPRG00000010046)	RNF11 (ENSPPRG00000007187)	C1orf185 (ENSPPRG00000006868)	CDKN2C (ENSPPRG00000005623)	FAF1 (ENSPPRG00000005301)	DMRTA2 (ENSPPRG00000003651)	ELAVL4 (ENSPPRG00000002764)	ENSPPRG00000001721	ENSPPRG00000017680	BEND5 (ENSPPRG00000022625)	AGBL4 (ENSPPRG00000022863)	SPATA6 (ENSPPRG00000023213) ##22	SLC5A9 (ENSPPRG00000020008)	TRABD2B (ENSPPRG00000013314)	FOXD2 (ENSPPRG00000017402)	FOXE3 (ENSPPRG00000012774)	ENSPPRG00000012334	STIL (ENSPPRG00000010998)	TAL1 (ENSPPRG00000008561)	PDZK1IP1 (ENSPPRG00000008341)	CYP4X1 (ENSPPRG00000008167)	CYP4A37 (ENSPPRG00000007723)	CYP4A106 (ENSPPRG00000005233)	ENSPPRG00000004202	CYP4B1 (ENSPPRG00000022661)	EFCAB14 (ENSPPRG00000023530)	TEX38 (ENSPPRG00000023945)
lion	MODERN SPECIES	8	ENSPLOG00000004732	ENSPLOG00000004872	EPS15 (ENSPLOG00000005145)	ENSPLOG00000005215	TTC39A (ENSPLOG00000005228)	RNF11 (ENSPLOG00000005279)	C1orf185 (ENSPLOG00000005287)	CDKN2C (ENSPLOG00000005297)	FAF1 (ENSPLOG00000005328)	ENSPLOG00000005409	DMRTA2 (ENSPLOG00000005423)	ENSPLOG00000005447	ELAVL4 (ENSPLOG00000005634)	AGBL4 (ENSPLOG00000006006)	BEND5 (ENSPLOG00000006114)	SPATA6 (ENSPLOG00000006148) ##22	SLC5A9 (ENSPLOG00000006218)	TRABD2B (ENSPLOG00000006352)	FOXD2 (ENSPLOG00000006398)	FOXE3 (ENSPLOG00000006409)	CMPK1 (ENSPLOG00000006430)	STIL (ENSPLOG00000006499)	TAL1 (ENSPLOG00000006549)	PDZK1IP1 (ENSPLOG00000006576)	CYP4X1 (ENSPLOG00000006599)	ENSPLOG00000006700	ENSPLOG00000006991	ENSPLOG00000007060	ENSPLOG00000007122	EFCAB14 (ENSPLOG00000007158)	TEX38 (ENSPLOG00000007261)
Cat	MODERN SPECIES	239	TXNDC12 (ENSFCAG00000023885)	ENSFCAG00000031410	NRDC (ENSFCAG00000022018)	OSBPL9 (ENSFCAG00000010298)	EPS15 (ENSFCAG00000027650)	TTC39A (ENSFCAG00000014565)	RNF11 (ENSFCAG00000035271)	CC1H1orf185 (ENSFCAG00000043741)	CDKN2C (ENSFCAG00000033306)	ENSFCAG00000028644	FAF1 (ENSFCAG00000011327)	DMRTA2 (ENSFCAG00000045950)	ELAVL4 (ENSFCAG00000010438)	ENSFCAG00000022016	AGBL4 (ENSFCAG00000000550)	SPATA6 (ENSFCAG00000029729) ##22	SLC5A9 (ENSFCAG00000000548)	TRABD2B (ENSFCAG00000000546)	FOXD2 (ENSFCAG00000044804)	FOXE3 (ENSFCAG00000046511)	CMPK1 (ENSFCAG00000025426)	STIL (ENSFCAG00000012141)	TAL1 (ENSFCAG00000045414)	PDZK1IP1 (ENSFCAG00000019308)	CYP4X1 (ENSFCAG00000007168)	CYP4A37 (ENSFCAG00000040744)	ENSFCAG00000037991	ENSFCAG00000038068	CYP4B1 (ENSFCAG00000002762)	EFCAB14 (ENSFCAG00000004536)	TEX38 (ENSFCAG00000004534)
Caniformia	ANCESTRAL SPECIES	2	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Canidae	ANCESTRAL SPECIES	12	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.db.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.e.a.b	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.n	ENSGT00940000155173.m.f	ENSGT00940000161441.d	ENSGT00390000011196
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831.db.a	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.e.a.b	ENSGT00940000155173.m.e.a.a	ENSGT00940000155173.m.f	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
Dingo	MODERN SPECIES	344	NRDC (ENSCAFG00020011213)	OSBPL9 (ENSCAFG00020013459)	EPS15 (ENSCAFG00020013470)	TTC39A (ENSCAFG00020013487)	RNF11 (ENSCAFG00020013494)	C1orf185 (ENSCAFG00020013497)	CDKN2C (ENSCAFG00020013503)	ENSCAFG00020013515	ENSCAFG00020013544	ENSCAFG00020013547	DMRTA2 (ENSCAFG00020013554)	ELAVL4 (ENSCAFG00020013581)	BEND5 (ENSCAFG00020014470)	ENSCAFG00020014471	ENSCAFG00020014472	SPATA6 (ENSCAFG00020014474) ##22	SLC5A9 (ENSCAFG00020014477)	TRABD2B (ENSCAFG00020014503)	FOXD2 (ENSCAFG00020014506)	FOXE3 (ENSCAFG00020014507)	CMPK1 (ENSCAFG00020014509)	STIL (ENSCAFG00020014512)	TAL1 (ENSCAFG00020014522)	PDZK1IP1 (ENSCAFG00020014525)	CYP4X1 (ENSCAFG00020014528)	ENSCAFG00020014556	ENSCAFG00020014560	ENSCAFG00020014722	ENSCAFG00020014728	CYP4B1 (ENSCAFG00020014733)	ENSCAFG00020014748
Dog	MODERN SPECIES	6	ZFYVE9 (ENSCAFG00845020399)	BTF3L4 (ENSCAFG00845020858)	TXNDC12 (ENSCAFG00845021135)	NRDC (ENSCAFG00845021372)	OSBPL9 (ENSCAFG00845021857)	EPS15 (ENSCAFG00845022599)	TTC39A (ENSCAFG00845023616)	RNF11 (ENSCAFG00845024230)	C1orf185 (ENSCAFG00845024301)	CDKN2C (ENSCAFG00845024510)	FAF1 (ENSCAFG00845024609)	ENSCAFG00845024999	DMRTA2 (ENSCAFG00845025044)	ELAVL4 (ENSCAFG00845025265)	AGBL4 (ENSCAFG00845025876)	SPATA6 (ENSCAFG00845026650) ##22	SLC5A9 (ENSCAFG00845026902)	TRABD2B (ENSCAFG00845027015)	FOXD2 (ENSCAFG00845027149)	FOXE3 (ENSCAFG00845027178)	CMPK1 (ENSCAFG00845016195)	STIL (ENSCAFG00845016474)	TAL1 (ENSCAFG00845016668)	PDZK1IP1 (ENSCAFG00845016726)	CYP4X1 (ENSCAFG00845016805)	ENSCAFG00845017005	CYP4A38 (ENSCAFG00845017288)	CYP4A11 (ENSCAFG00845018002)	CYP4B1 (ENSCAFG00845018109)	EFCAB14 (ENSCAFG00845018333)	ENSCAFG00845018605
Red fox	MODERN SPECIES	9	NRDC (ENSVVUG00000004788)	OSBPL9 (ENSVVUG00000004835)	EPS15 (ENSVVUG00000004902)	TTC39A (ENSVVUG00000005650)	RNF11 (ENSVVUG00000005971)	ENSVVUG00000005976	C1orf185 (ENSVVUG00000005980)	CDKN2C (ENSVVUG00000006026)	FAF1 (ENSVVUG00000006069)	ENSVVUG00000006081	ENSVVUG00000006087	ENSVVUG00000006092	ELAVL4 (ENSVVUG00000006175)	BEND5 (ENSVVUG00000006293)	ENSVVUG00000006309	SPATA6 (ENSVVUG00000006346) ##22	SLC5A9 (ENSVVUG00000006359)	TRABD2B (ENSVVUG00000006378)	CMPK1 (ENSVVUG00000006426)	STIL (ENSVVUG00000006441)	ENSVVUG00000006648	PDZK1IP1 (ENSVVUG00000006655)	CYP4X1 (ENSVVUG00000006664)	ENSVVUG00000006690	ENSVVUG00000006722	ENSVVUG00000006748	ENSVVUG00000006767	CYP4B1 (ENSVVUG00000007000)	EFCAB14 (ENSVVUG00000007017)	TEX38 (ENSVVUG00000007029)	ATPAF1 (ENSVVUG00000007030)
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886
Ursidae	ANCESTRAL SPECIES		ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT01010000229967	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.h	ENSGT00940000157546.g	ENSGT00940000161273	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886
Giant Panda	MODERN SPECIES	11	ENSAMEG00000027180	NRDC (ENSAMEG00000009034)	OSBPL9 (ENSAMEG00000008968)	EPS15 (ENSAMEG00000017515)	TTC39A (ENSAMEG00000017488)	RNF11 (ENSAMEG00000017484)	C1orf185 (ENSAMEG00000024320)	CDKN2C (ENSAMEG00000028782)	ENSAMEG00000031167	FAF1 (ENSAMEG00000017472)	DMRTA2 (ENSAMEG00000026233)	ENSAMEG00000029933	ELAVL4 (ENSAMEG00000017455)	BEND5 (ENSAMEG00000009379)	AGBL4 (ENSAMEG00000009391)	SPATA6 (ENSAMEG00000008559) ##22	SLC5A9 (ENSAMEG00000008581)	TRABD2B (ENSAMEG00000018869)	CMPK1 (ENSAMEG00000000012)	STIL (ENSAMEG00000000013)	TAL1 (ENSAMEG00000029725)	PDZK1IP1 (ENSAMEG00000024007)	CYP4X1 (ENSAMEG00000000016)	ENSAMEG00000029837	CYP4B1 (ENSAMEG00000014075)	EFCAB14 (ENSAMEG00000014050)	TEX38 (ENSAMEG00000020215)	ENSAMEG00000025041	ENSAMEG00000014047	MKNK1 (ENSAMEG00000014008)	KNCN (ENSAMEG00000014006)
Ursus	ANCESTRAL SPECIES	19	ENSGT00950000185079.c	ENSGT00940000154296	ENSGT00530000063273.a	ENSGT00900000142372	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.h	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886	ENSGT00400000024146	ENSGT00940000155505.a	ENSGT00940000163316
Polar bear	MODERN SPECIES	218	RAB3B (ENSUMAG00000022807)	NRDC (ENSUMAG00000022809)	OSBPL9 (ENSUMAG00000022814)	EPS15 (ENSUMAG00000022892)	TTC39A (ENSUMAG00000023064)	RNF11 (ENSUMAG00000023091)	C1orf185 (ENSUMAG00000023093)	CDKN2C (ENSUMAG00000023096)	FAF1 (ENSUMAG00000023099)	ENSUMAG00000023105	ENSUMAG00000023107	ELAVL4 (ENSUMAG00000023149)	ENSUMAG00000023280	ENSUMAG00000023282	ENSUMAG00000023284	SPATA6 (ENSUMAG00000023285) ##22	ENSUMAG00000023291	CMPK1 (ENSUMAG00000023298)	STIL (ENSUMAG00000023306)	PDZK1IP1 (ENSUMAG00000023333)	CYP4X1 (ENSUMAG00000023337)	ENSUMAG00000023368	CYP4B1 (ENSUMAG00000023554)	EFCAB14 (ENSUMAG00000023556)	TEX38 (ENSUMAG00000023557)	ATPAF1 (ENSUMAG00000023558)	MOB3C (ENSUMAG00000023559)	MKNK1 (ENSUMAG00000023560)	KNCN (ENSUMAG00000023562)	DMBX1 (ENSUMAG00000023564)	ENSUMAG00000023566
American black bear	DUPLICATION
American black bear	MODERN SPECIES	4970																ENSUAMG00000019396 ##22	ENSUAMG00000019397 ##22
American black bear	MODERN SPECIES	4970															ENSUAMG00000019396 ##22	ENSUAMG00000019397 ##22
Mustelinae	ANCESTRAL SPECIES															ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.m.d	ENSGT00940000155173.m.c.b	ENSGT00940000155173.m.c.a.b	ENSGT00940000155173.m.c.a.a.a	ENSGT00940000161441.d	ENSGT00390000011196	ENSGT00390000016446
American mink	MODERN SPECIES	344														BEND5 (ENSNVIG00000002432)	ENSNVIG00000002411	SPATA6 (ENSNVIG00000002346) ##22	SLC5A9 (ENSNVIG00000002273)	TRABD2B (ENSNVIG00000002254)	FOXD2 (ENSNVIG00000002242)	CMPK1 (ENSNVIG00000002204)	STIL (ENSNVIG00000002103)	TAL1 (ENSNVIG00000002084)	PDZK1IP1 (ENSNVIG00000002077)	CYP4X1 (ENSNVIG00000002045)	ENSNVIG00000002014	ENSNVIG00000001905
Ferret	MODERN SPECIES	167													ENSMPUG00000012350	BEND5 (ENSMPUG00000012351)	AGBL4 (ENSMPUG00000012352)	SPATA6 (ENSMPUG00000012355) ##22	SLC5A9 (ENSMPUG00000012383)	TRABD2B (ENSMPUG00000012386)	ENSMPUG00000012391	CMPK1 (ENSMPUG00000012394)	STIL (ENSMPUG00000012399)	TAL1 (ENSMPUG00000012410)	PDZK1IP1 (ENSMPUG00000012421)	CYP4X1 (ENSMPUG00000012436)	ENSMPUG00000012443	ENSMPUG00000012510	ENSMPUG00000012515	ENSMPUG00000012694	CYP4B1 (ENSMPUG00000012724)	EFCAB14 (ENSMPUG00000012730)	TEX38 (ENSMPUG00000018579)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Equus	ANCESTRAL SPECIES	2	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173.q.b	ENSGT00940000155173.q.a.b	ENSGT00940000161441.c.b.a	ENSGT00940000155173.q.a.a	ENSGT00940000161441.c.a.a	ENSGT00940000155173.r	ENSGT00940000163504
Donkey	MODERN SPECIES	25	RAB3B (ENSEASG00005027002)	NRDC (ENSEASG00005011045)	OSBPL9 (ENSEASG00005010962)	ENSEASG00005030901	ENSEASG00005010925	EPS15 (ENSEASG00005010751)	TTC39A (ENSEASG00005010736)	RNF11 (ENSEASG00005037659)	C1orf185 (ENSEASG00005037128)	CDKN2C (ENSEASG00005010733)	FAF1 (ENSEASG00005010732)	DMRTA2 (ENSEASG00005037248)	ELAVL4 (ENSEASG00005010728)	BEND5 (ENSEASG00005010723)	AGBL4 (ENSEASG00005010721)	SPATA6 (ENSEASG00005010718) ##22	SLC5A9 (ENSEASG00005010710)	TRABD2B (ENSEASG00005010700)	CMPK1 (ENSEASG00005010695)	STIL (ENSEASG00005010657)	ENSEASG00005038126	ENSEASG00005023820	ENSEASG00005034479	ENSEASG00005010647	ENSEASG00005010640	ENSEASG00005010633	ENSEASG00005014485	ENSEASG00005010169	ENSEASG00005037264	ENSEASG00005010627	ENSEASG00005024025
Horse	MODERN SPECIES	11	ENSECAG00000017935	CALR4 (ENSECAG00000015205)	EPS15 (ENSECAG00000020824)	TTC39A (ENSECAG00000015196)	RNF11 (ENSECAG00000036831)	ENSECAG00000055972	C2H1orf185 (ENSECAG00000025041)	CDKN2C (ENSECAG00000004817)	FAF1 (ENSECAG00000008495)	ENSECAG00000044105	DMRTA2 (ENSECAG00000029061)	ELAVL4 (ENSECAG00000022284)	ENSECAG00000059132	BEND5 (ENSECAG00000051417)	ENSECAG00000055301	SPATA6 (ENSECAG00000000158) ##22	SLC5A9 (ENSECAG00000011684)	TRABD2B (ENSECAG00000022697)	FOXE3 (ENSECAG00000049916)	CMPK1 (ENSECAG00000000428)	STIL (ENSECAG00000011152)	TAL1 (ENSECAG00000018746)	CYP4X1 (ENSECAG00000020100)	ENSECAG00000033081	ENSECAG00000027949	ENSECAG00000045102	ENSECAG00000046409	ENSECAG00000036794	ENSECAG00000048848	ENSECAG00000028078	ENSECAG00000024521
Chiroptera	ANCESTRAL SPECIES		ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Megabat	MODERN SPECIES	141														ELAVL4 (ENSPVAG00000003632)	AGBL4 (ENSPVAG00000003630)	SPATA6 (ENSPVAG00000003628) ##22	SLC5A9 (ENSPVAG00000003625)
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00990000204587	ENSGT00940000157546	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441.d
Greater horseshoe bat	MODERN SPECIES	27	TXNDC12 (ENSRFEG00010003659)	RAB3B (ENSRFEG00010003630)	NRDC (ENSRFEG00010003552)	OSBPL9 (ENSRFEG00010003405)	ENSRFEG00010003316	EPS15 (ENSRFEG00010003189)	TTC39A (ENSRFEG00010003039)	RNF11 (ENSRFEG00010002953)	ENSRFEG00010002937	CDKN2C (ENSRFEG00010002917)	FAF1 (ENSRFEG00010002825)	DMRTA2 (ENSRFEG00010002791)	ELAVL4 (ENSRFEG00010002640)	BEND5 (ENSRFEG00010002514)	AGBL4 (ENSRFEG00010002410)	SPATA6 (ENSRFEG00010002287) ##22	ENSRFEG00010002251	SLC5A9 (ENSRFEG00010002222)	ENSRFEG00010002204	ENSRFEG00010002180	ENSRFEG00010002154	ENSRFEG00010002138	TRABD2B (ENSRFEG00010002104)	FOXD2 (ENSRFEG00010002087)	FOXE3 (ENSRFEG00010002079)	CMPK1 (ENSRFEG00010002044)	ENSRFEG00010002024	STIL (ENSRFEG00010001982)	TAL1 (ENSRFEG00010001940)	PDZK1IP1 (ENSRFEG00010001905)	CYP4X1 (ENSRFEG00010001881)
Microbat	MODERN SPECIES	974	ENSMLUG00000016884	TXNDC12 (ENSMLUG00000016872)	RAB3B (ENSMLUG00000016868)	NRDC (ENSMLUG00000009233)	OSBPL9 (ENSMLUG00000009199)	EPS15 (ENSMLUG00000004454)	TTC39A (ENSMLUG00000004443)	ENSMLUG00000004439	C1orf185 (ENSMLUG00000023716)	CDKN2C (ENSMLUG00000006627)	FAF1 (ENSMLUG00000006252)	DMRTA2 (ENSMLUG00000006249)	ELAVL4 (ENSMLUG00000006226)	BEND5 (ENSMLUG00000016578)	ENSMLUG00000016567	SPATA6 (ENSMLUG00000011417) ##22	SLC5A9 (ENSMLUG00000010198)	ENSMLUG00000024145	ENSMLUG00000022445	TRABD2B (ENSMLUG00000010918)	STIL (ENSMLUG00000006395)	TAL1 (ENSMLUG00000006388)	PDZK1IP1 (ENSMLUG00000006083)	CYP4X1 (ENSMLUG00000011781)	ENSMLUG00000002780	ENSMLUG00000025621	ENSMLUG00000024150	CYP4B1 (ENSMLUG00000002776)	ENSMLUG00000014593	TEX38 (ENSMLUG00000029002)	ATPAF1 (ENSMLUG00000007861)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00530000063821.b.a ##22
Hedgehog	MODERN SPECIES	2885																SPATA6 (ENSEEUG00000008554) ##22
Common shrew	MODERN SPECIES	2144																SPATA6 (ENSSARG00000000462) ##22
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000162886
Afrotheria	ANCESTRAL SPECIES	21	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Afrotheria_a	ANCESTRAL SPECIES	20	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000163721	ENSGT00390000000797	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000160927	ENSGT00940000155173	ENSGT00940000161441	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b	ENSGT00940000154587.a.a
Elephant	MODERN SPECIES	145	RAB3B (ENSLAFG00000016112)	NRDC (ENSLAFG00000001255)	OSBPL9 (ENSLAFG00000001251)	ENSLAFG00000016931	EPS15 (ENSLAFG00000012528)	TTC39A (ENSLAFG00000021966)	ENSLAFG00000026503	C1orf185 (ENSLAFG00000030448)	CDKN2C (ENSLAFG00000009338)	ENSLAFG00000032567	FAF1 (ENSLAFG00000012030)	DMRTA2 (ENSLAFG00000021953)	ELAVL4 (ENSLAFG00000001087)	BEND5 (ENSLAFG00000003490)	ENSLAFG00000012535	SPATA6 (ENSLAFG00000016279) ##22	SLC5A9 (ENSLAFG00000016268)	ENSLAFG00000032111	FOXD2 (ENSLAFG00000026547)	ENSLAFG00000006582	STIL (ENSLAFG00000006255)	TAL1 (ENSLAFG00000013880)	PDZK1IP1 (ENSLAFG00000029973)	ENSLAFG00000002985	ENSLAFG00000027061	ENSLAFG00000011889	CYP4B1 (ENSLAFG00000011142)	EFCAB14 (ENSLAFG00000011146)	TEX38 (ENSLAFG00000032346)	ATPAF1 (ENSLAFG00000022494)	MOB3C (ENSLAFG00000002653)
Hyrax	MODERN SPECIES	4671																SPATA6 (ENSPCAG00000010558) ##22
Tenrec	MODERN SPECIES	2803																ENSETEG00000005210 ##22
Xenarthra	ANCESTRAL SPECIES	1218														ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546
Armadillo	MODERN SPECIES	1563												ENSDNOG00000005297	ENSDNOG00000048168	BEND5 (ENSDNOG00000044786)	ENSDNOG00000032524	SPATA6 (ENSDNOG00000037466) ##22	SLC5A9 (ENSDNOG00000004042)
Sloth	MODERN SPECIES	2485																ENSCHOG00000013881 ##22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399.n	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.j	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.x.a	ENSGT00940000155173.x.b	ENSGT00940000161441.a	ENSGT00940000155173.w.b	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00530000063273.a	ENSGT00390000002443	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399.n	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.j	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.x.a	ENSGT00940000155173.x.b	ENSGT00940000161441.a	ENSGT00940000155173.w.a	ENSGT00940000155173.w.b	ENSGT00390000011196	ENSGT00390000016446	ENSGT00390000012765
Diprotodontia	ANCESTRAL SPECIES	80	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399.n	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.j	ENSGT00940000161273
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00390000002443	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399.n	ENSGT00390000001724	ENSGT00940000155042.b	ENSGT00530000063821.b.a ##22	ENSGT00940000157546.j	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000163540	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000155173.x.a	ENSGT00940000155173.x.b	ENSGT00940000161441.a	ENSGT00940000161441.b.a.a	ENSGT00940000155173.w.a	ENSGT00940000155173.w.b	ENSGT00390000011196	ENSGT00390000016446
Common wonbat	MODERN SPECIES	1060	KTI12 (ENSVURG00010018437)	TXNDC12 (ENSVURG00010018423)	NRDC (ENSVURG00010018372)	OSBPL9 (ENSVURG00010018296)	ENSVURG00010018275	EPS15 (ENSVURG00010018256)	TTC39A (ENSVURG00010018213)	RNF11 (ENSVURG00010018204)	CDKN2C (ENSVURG00010018190)	FAF1 (ENSVURG00010018181)	DMRTA2 (ENSVURG00010018172)	ELAVL4 (ENSVURG00010017721)	ENSVURG00010017690	BEND5 (ENSVURG00010017683)	ENSVURG00010017676	SPATA6 (ENSVURG00010017656) ##22	SLC5A9 (ENSVURG00010017646)	TRABD2B (ENSVURG00010017643)	FOXD2 (ENSVURG00010017640)	ENSVURG00010017639	CMPK1 (ENSVURG00010017630)	STIL (ENSVURG00010017620)	TAL1 (ENSVURG00010017608)	PDZK1IP1 (ENSVURG00010017600)	ENSVURG00010017586	ENSVURG00010017579	ENSVURG00010017567	ENSVURG00010017542	ENSVURG00010017535	ENSVURG00010017522	ENSVURG00010017500
koala	MODERN SPECIES	29	TXNDC12 (ENSPCIG00000024201)	RAB3B (ENSPCIG00000024200)	NRDC (ENSPCIG00000024193)	OSBPL9 (ENSPCIG00000024185)	ENSPCIG00000030211	EPS15 (ENSPCIG00000030216)	TTC39A (ENSPCIG00000006797)	RNF11 (ENSPCIG00000017406)	CDKN2C (ENSPCIG00000001502)	FAF1 (ENSPCIG00000001340)	DMRTA2 (ENSPCIG00000030921)	ELAVL4 (ENSPCIG00000032142)	ENSPCIG00000033716	BEND5 (ENSPCIG00000004124)	ENSPCIG00000012506	SPATA6 (ENSPCIG00000004132) ##22	SLC5A9 (ENSPCIG00000019164)	TRABD2B (ENSPCIG00000036779)	FOXD2 (ENSPCIG00000024785)	ENSPCIG00000016604	ENSPCIG00000016606	STIL (ENSPCIG00000006238)	TAL1 (ENSPCIG00000033850)	PDZK1IP1 (ENSPCIG00000006233)	ENSPCIG00000006228	ENSPCIG00000026491	ENSPCIG00000026492	ENSPCIG00000036724	ENSPCIG00000026493	ENSPCIG00000026495	ENSPCIG00000011510
Wallaby	MODERN SPECIES	3758																SPATA6 (ENSMEUG00000002499) ##22
Tasmanian devil	MODERN SPECIES	3	TXNDC12 (ENSSHAG00000022310)	KTI12 (ENSSHAG00000032395)	RAB3B (ENSSHAG00000028384)	NRDC (ENSSHAG00000002791)	OSBPL9 (ENSSHAG00000004308)	ENSSHAG00000006819	EPS15 (ENSSHAG00000007854)	TTC39A (ENSSHAG00000008699)	ENSSHAG00000029224	ENSSHAG00000032332	CDKN2C (ENSSHAG00000028975)	FAF1 (ENSSHAG00000011175)	ELAVL4 (ENSSHAG00000030056)	ENSSHAG00000028157	ENSSHAG00000008897	SPATA6 (ENSSHAG00000009732) ##22	ENSSHAG00000011466	FOXD2 (ENSSHAG00000020552)	CMPK1 (ENSSHAG00000009766)	STIL (ENSSHAG00000010095)	TAL1 (ENSSHAG00000023407)	ENSSHAG00000025781	ENSSHAG00000011157	ENSSHAG00000030071	ENSSHAG00000003731	ENSSHAG00000002195	ENSSHAG00000031091	ENSSHAG00000024463	ENSSHAG00000029874	ENSSHAG00000000201	EFCAB14 (ENSSHAG00000022941)
Opossum	MODERN SPECIES	1	RAB3B (ENSMODG00000040379)	NRDC (ENSMODG00000000839)	OSBPL9 (ENSMODG00000000934)	ENSMODG00000000946	ENSMODG00000043919	ENSMODG00000001043	TTC39A (ENSMODG00000001179)	RNF11 (ENSMODG00000001185)	CDKN2C (ENSMODG00000050495)	FAF1 (ENSMODG00000001243)	DMRTA2 (ENSMODG00000001251)	ENSMODG00000028629	ENSMODG00000037117	ELAVL4 (ENSMODG00000001300)	ENSMODG00000043124	SPATA6 (ENSMODG00000001370) ##22	ENSMODG00000001399	TRABD2B (ENSMODG00000025378)	ENSMODG00000001419	CMPK1 (ENSMODG00000001470)	STIL (ENSMODG00000001494)	TAL1 (ENSMODG00000001502)	ENSMODG00000001509	ENSMODG00000001521	ENSMODG00000025699	ENSMODG00000001709	ENSMODG00000045742	ENSMODG00000001890	EFCAB14 (ENSMODG00000001906)	ATPAF1 (ENSMODG00000001918)	MOB3C (ENSMODG00000048219)
Platypus	MODERN SPECIES	9	TXNDC12 (ENSOANG00000047968)	NRDC (ENSOANG00000050474)	OSBPL9 (ENSOANG00000040748)	ENSOANG00000012572	ENSOANG00000048539	ENSOANG00000014893	TTC39A (ENSOANG00000013494)	RNF11 (ENSOANG00000013493)	ENSOANG00000050041	ENSOANG00000045226	CDKN2C (ENSOANG00000040623)	FAF1 (ENSOANG00000006035)	DMRTA2 (ENSOANG00000040884)	ELAVL4 (ENSOANG00000036778)	BEND5 (ENSOANG00000009132)	ENSOANG00000041444 ##22	SLC5A9 (ENSOANG00000004257)	TRABD2B (ENSOANG00000037757)	ENSOANG00000030729	ENSOANG00000043767	ENSOANG00000015215	ENSOANG00000002942	TAL1 (ENSOANG00000032005)	PDZK1IP1 (ENSOANG00000042171)	ENSOANG00000002639	ENSOANG00000002637	ENSOANG00000014732	POMGNT1 (ENSOANG00000039832)	LURAP1 (ENSOANG00000044785)	RAD54L (ENSOANG00000039799)	LRRC41 (ENSOANG00000044307)
Anura	ANCESTRAL SPECIES	6	ENSGT00530000063273.a	ENSGT00940000159943	ENSGT00940000155026	ENSGT00940000154690	ENSGT00950000182915.b.b.b.a	ENSGT00940000155751	ENSGT00950000182917.a.b.a	ENSGT00730000110988	ENSGT00940000160194	ENSGT00940000154831	ENSGT00940000161649	ENSGT00940000157399	ENSGT00940000155042.b	ENSGT00390000001724	ENSGT00940000175969	ENSGT00530000063821.b.a ##22	ENSGT00940000157546	ENSGT00940000161273	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000160589	ENSGT00390000007310	ENSGT00940000159889	ENSGT00940000154660.b	ENSGT00940000161527.a.b.b	ENSGT00940000161527.b	ENSGT00940000161527.a.b.a	ENSGT00390000011196	ENSGT00940000154586.a	ENSGT00390000012765	ENSGT01050000244898.a.a.b
Leishan spiny toad	MODERN SPECIES	11	EPS15 (ENSLLEG00000029949)	TTC39A (ENSLLEG00000029871)	RNF11 (ENSLLEG00000029850)	CDKN2C (ENSLLEG00000029841)	ENSLLEG00000029835	DMRTA2 (ENSLLEG00000029483)	ELAVL4 (ENSLLEG00000029217)	ENSLLEG00000029175	ENSLLEG00000029162	ENSLLEG00000029154	ENSLLEG00000029143	ENSLLEG00000029132	BEND5 (ENSLLEG00000029117)	ENSLLEG00000029098	ENSLLEG00000029090	SPATA6 (ENSLLEG00000029043) ##22	ENSLLEG00000029040	ENSLLEG00000028872	ENSLLEG00000028790	ENSLLEG00000028776	TRABD2B (ENSLLEG00000028753)	FOXD2 (ENSLLEG00000028734)	ENSLLEG00000028721	CMPK1 (ENSLLEG00000028695)	STIL (ENSLLEG00000028599)	TAL1 (ENSLLEG00000028576)	ENSLLEG00000028546	ENSLLEG00000028380	ENSLLEG00000024624	ENSLLEG00000022725	ENSLLEG00000022482
Frog	MODERN SPECIES	4	txndc12 (ENSXETG00000039370)	rab3b (ENSXETG00000008055)	nrdc (ENSXETG00000008054)	osbpl9 (ENSXETG00000002831)	actr3 (ENSXETG00000002832)	eps15 (ENSXETG00000002833)	ttc39a (ENSXETG00000002835)	rnf11 (ENSXETG00000002837)	cdkn2c (ENSXETG00000033220)	faf1 (ENSXETG00000002841)	dmrta2 (ENSXETG00000002846)	ppp1r26 (ENSXETG00000008680)	ENSXETG00000035079	agbl4 (ENSXETG00000008687)	ENSXETG00000037622	ENSXETG00000042689 ##22	ENSXETG00000044812	ENSXETG00000042521	slc5a9 (ENSXETG00000006935)	trabd2b (ENSXETG00000035683)	ENSXETG00000037072	foxd2 (ENSXETG00000047367)	foxe3 (ENSXETG00000016339)	cmpk1 (ENSXETG00000043840)	stil (ENSXETG00000016343)	tal1 (ENSXETG00000041260)	pdzk1ip1 (ENSXETG00000032460)	cyp4b1.4 (ENSXETG00000024496)	cyp4b1.5 (ENSXETG00000040829)	cyp4b1 (ENSXETG00000024498)	efcab14 (ENSXETG00000016352)
Coelacanth	MODERN SPECIES	310														ENSLACG00000010227	BEND5 (ENSLACG00000012193)	SPATA6 (ENSLACG00000015897) ##22	SLC5A9 (ENSLACG00000016140)	zgc:171480 (ENSLACG00000016281)	ENSLACG00000017141	ENSLACG00000017576
Elephant shark	MODERN SPECIES	1597													ENSCMIG00000019123	elavl4 (ENSCMIG00000019132)	agbl4 (ENSCMIG00000019163)	ENSCMIG00000019181 ##22	slc5a9 (ENSCMIG00000019236)	zgc:171480 (ENSCMIG00000019361)	ENSCMIG00000019364 ##24	TRABD2B (ENSCMIG00000019370)	ENSCMIG00000019373	foxe3 (ENSCMIG00000019375)	cmpk (ENSCMIG00000019378)	stil (ENSCMIG00000019380)	tal1 (ENSCMIG00000019384)	ENSCMIG00000019386	PATJ (ENSCMIG00000019399)	tm2d1 (ENSCMIG00000019416)	nfia (ENSCMIG00000019423)	frem1b (ENSCMIG00000019432)	ENSCMIG00000019434