Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000157891	ENSGT00940000158371	ENSGT01060000248588.a.c.a	ENSGT00950000183227	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00390000015484	ENSGT00940000159491	ENSGT00390000015384	ENSGT00940000159354	ENSGT00560000078590	ENSGT00390000000618	ENSGT00940000162170	ENSGT00940000154589.a ##19	ENSGT00940000159541	ENSGT00940000154518.a #22	ENSGT00940000161455	ENSGT00390000007221.a.a	ENSGT00390000002845	ENSGT00390000014889	ENSGT00940000157753	ENSGT00390000015996	ENSGT00940000157712	ENSGT00940000159747	ENSGT00390000000973.a.a	ENSGT00940000156333	ENSGT00940000161724	ENSGT00940000159626	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000157891	ENSGT00940000158371	ENSGT01060000248588.a.c.a	ENSGT00950000183227	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00390000015484	ENSGT00940000159491	ENSGT00390000015384	ENSGT00940000159354	ENSGT00560000078590	ENSGT00390000000618	ENSGT00940000162170	ENSGT00940000154589.a ##19	ENSGT00940000159541	ENSGT00940000154518.a #22	ENSGT00940000161455	ENSGT00390000007221.a.a	ENSGT00390000002845	ENSGT00390000014889	ENSGT00940000157753	ENSGT00390000015996	ENSGT00940000157712	ENSGT00940000159747	ENSGT00390000000973.a.a	ENSGT00940000156333	ENSGT00940000161724	ENSGT00940000159626	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000157891	ENSGT00940000158371	ENSGT01060000248588.a.c.a	ENSGT00950000183227	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00390000015484	ENSGT00940000159491	ENSGT00390000015384	ENSGT00940000159354	ENSGT00560000078590	ENSGT00390000000618	ENSGT00940000162170	ENSGT00940000154589.a ##19	ENSGT00940000159541	ENSGT00940000154518.a #22	ENSGT00940000161455	ENSGT00390000007221.a.a	ENSGT00390000002845	ENSGT00390000014889	ENSGT00940000157753	ENSGT00390000015996	ENSGT00940000157712	ENSGT00940000159747	ENSGT00390000000973.a.a	ENSGT00940000156333	ENSGT00940000161724	ENSGT00940000159626	ENSGT00940000159431	ENSGT00950000183109.c.a.b	ENSGT00940000158544
spretus	DUPLICATION
spretus	MODERN SPECIES	12	MGP_SPRETEiJ_G0026559 #7	MGP_SPRETEiJ_G0026560 #8	Ndst4 (MGP_SPRETEiJ_G0026561) #9	Ugt8a (MGP_SPRETEiJ_G0026562) #10	Arsj (MGP_SPRETEiJ_G0026563) #11	Camk2d (MGP_SPRETEiJ_G0026564) #12	MGP_SPRETEiJ_G0026565 #13	MGP_SPRETEiJ_G0026566 #14	MGP_SPRETEiJ_G0026567 #15	Zgrf1 (MGP_SPRETEiJ_G0026568) #16	Neurog2 (MGP_SPRETEiJ_G0026569) #17	Alpk1 (MGP_SPRETEiJ_G0026570) #18	Tifa (MGP_SPRETEiJ_G0026571) #19	Ap1ar (MGP_SPRETEiJ_G0026572) #20	Fam241a (MGP_SPRETEiJ_G0026573) #21	Pitx2 (MGP_SPRETEiJ_G0026574) #22	Enpep (MGP_SPRETEiJ_G0026575) #23	Elovl6 (MGP_SPRETEiJ_G0026576) #24	Egf (MGP_SPRETEiJ_G0026577) #25	Lrit3 (MGP_SPRETEiJ_G0026578) #26	Rrh (MGP_SPRETEiJ_G0026579) #27	Gar1 (MGP_SPRETEiJ_G0026580) #28	MGP_SPRETEiJ_G0026581 #29	Pla2g12a (MGP_SPRETEiJ_G0026582) #30	Casp6 (MGP_SPRETEiJ_G0026583) #31	Mcub (MGP_SPRETEiJ_G0026584) #32	Sec24b (MGP_SPRETEiJ_G0026585) #33	Col25a1 (MGP_SPRETEiJ_G0026586) #34	Etnppl (MGP_SPRETEiJ_G0026587) #35	Ostc (MGP_SPRETEiJ_G0026588) #36	Rpl34 (MGP_SPRETEiJ_G0026589) #37
spretus	MODERN SPECIES	4	Hnrnpa0 (MGP_SPRETEiJ_G0019473)	Klhl3 (MGP_SPRETEiJ_G0019472)	Spock1 (MGP_SPRETEiJ_G0019471)	Trpc7 (MGP_SPRETEiJ_G0019470)	Smad5 (MGP_SPRETEiJ_G0019469)	Tgfbi (MGP_SPRETEiJ_G0019468)	Lect2 (MGP_SPRETEiJ_G0019467)	Fbxl21 (MGP_SPRETEiJ_G0019466)	Il9 (MGP_SPRETEiJ_G0019465)	Slc25a48 (MGP_SPRETEiJ_G0019464)	MGP_SPRETEiJ_G0019463	Cxcl14 (MGP_SPRETEiJ_G0019462)	Neurog1 (MGP_SPRETEiJ_G0019461)	Tifab (MGP_SPRETEiJ_G0019460) ##19	Macroh2a1 (MGP_SPRETEiJ_G0019459)	Pitx1 (MGP_SPRETEiJ_G0019458) ##22	Catsper3 (MGP_SPRETEiJ_G0019457)	Pcbd2 (MGP_SPRETEiJ_G0019456)	Txndc15 (MGP_SPRETEiJ_G0019455)	MGP_SPRETEiJ_G0019454	Ddx46 (MGP_SPRETEiJ_G0019453)	Caml (MGP_SPRETEiJ_G0019452)	B4galt7 (MGP_SPRETEiJ_G0019451)	Tmed9 (MGP_SPRETEiJ_G0019450)	Fam193b (MGP_SPRETEiJ_G0019449)	Ddx41 (MGP_SPRETEiJ_G0019448)	Dok3 (MGP_SPRETEiJ_G0019447)	Pdlim7 (MGP_SPRETEiJ_G0019446)	Dbn1 (MGP_SPRETEiJ_G0019445)	Prr7 (MGP_SPRETEiJ_G0019444)	Grk6 (MGP_SPRETEiJ_G0019443)
Steppe mouse	MODERN SPECIES	3363	Trpc7 (ENSMSIG00000019854)	Smim32 (ENSMSIG00000019832)	Smad5 (ENSMSIG00000019822)	Tgfbi (ENSMSIG00000019777)	ENSMSIG00000019771	Lect2 (ENSMSIG00000019756)	Fbxl21 (ENSMSIG00000019691)	Il9 (ENSMSIG00000019669)	Slc25a48 (ENSMSIG00000019652)	ENSMSIG00000019638	Cxcl14 (ENSMSIG00000019603)	Neurog1 (ENSMSIG00000019595)	ENSMSIG00000019581	Tifab (ENSMSIG00000019578) ##19	Macroh2a1 (ENSMSIG00000019507)	Pitx1 (ENSMSIG00000019484) #22	Catsper3 (ENSMSIG00000019447)	ENSMSIG00000019438	ENSMSIG00000019428	Pcbd2 (ENSMSIG00000019409)	Txndc15 (ENSMSIG00000019395)	B230219D22Rik (ENSMSIG00000019391)	Ddx46 (ENSMSIG00000019031)	Caml (ENSMSIG00000019011)	B4galt7 (ENSMSIG00000018964)	ENSMSIG00000018954	Tmed9 (ENSMSIG00000018897)	Fam193b (ENSMSIG00000018874)	Ddx41 (ENSMSIG00000018747)	Dok3 (ENSMSIG00000018717)	Pdlim7 (ENSMSIG00000018669)
Mouse	DUPLICATION
Mouse	MODERN SPECIES	12	Tram1l1 (ENSMUSG00000044528)	1700006A11Rik (ENSMUSG00000027973)	1700003H04Rik (ENSMUSG00000039174) #8	Ndst4 (ENSMUSG00000027971) #9	Ugt8a (ENSMUSG00000032854) #10	Arsj (ENSMUSG00000046561) #11	Camk2d (ENSMUSG00000053819) #12	Ank2 (ENSMUSG00000032826) #13	Larp7 (ENSMUSG00000027968) #14	Zgrf1 (ENSMUSG00000051278) #16	Neurog2 (ENSMUSG00000027967) #17	Alpk1 (ENSMUSG00000028028) #18	Tifa (ENSMUSG00000046688) #19	Ap1ar (ENSMUSG00000074238) #20	Fam241a (ENSMUSG00000050549) #21	Pitx2 (ENSMUSG00000028023) #22	Enpep (ENSMUSG00000028024) #23	Elovl6 (ENSMUSG00000041220) #24	Egf (ENSMUSG00000028017) #25	Lrit3 (ENSMUSG00000093865) #26	Rrh (ENSMUSG00000028012) #27	Gar1 (ENSMUSG00000028010) #28	Cfi (ENSMUSG00000058952) #29	Pla2g12a (ENSMUSG00000027999) #30	Casp6 (ENSMUSG00000027997) #31	Mcub (ENSMUSG00000027994) #32	Sec24b (ENSMUSG00000001052) #33	Col25a1 (ENSMUSG00000058897) #34	Etnppl (ENSMUSG00000019232) #35	Ostc (ENSMUSG00000041084) #36	Rpl34 (ENSMUSG00000062006) #37
Mouse	MODERN SPECIES	4	Hnrnpa0 (ENSMUSG00000007836)	Klhl3 (ENSMUSG00000014164)	Spock1 (ENSMUSG00000056222)	Trpc7 (ENSMUSG00000021541)	Smim32 (ENSMUSG00000110086)	Smad5 (ENSMUSG00000021540)	Tgfbi (ENSMUSG00000035493)	Lect2 (ENSMUSG00000021539)	Fbxl21 (ENSMUSG00000035509)	Il9 (ENSMUSG00000021538)	Slc25a48 (ENSMUSG00000021509)	Cxcl14 (ENSMUSG00000021508)	Neurog1 (ENSMUSG00000048904)	Tifab (ENSMUSG00000049625) ##19	Macroh2a1 (ENSMUSG00000015937)	Pitx1 (ENSMUSG00000021506) #22	Catsper3 (ENSMUSG00000021499)	Pcbd2 (ENSMUSG00000021496)	Txndc15 (ENSMUSG00000021497)	B230219D22Rik (ENSMUSG00000045767)	Ddx46 (ENSMUSG00000021500)	Caml (ENSMUSG00000021501)	B4galt7 (ENSMUSG00000021504)	Tmed9 (ENSMUSG00000058569)	Fam193b (ENSMUSG00000021495)	Ddx41 (ENSMUSG00000021494)	Dok3 (ENSMUSG00000035711)	Pdlim7 (ENSMUSG00000021493)	Dbn1 (ENSMUSG00000034675)	Prr7 (ENSMUSG00000034686)	Grk6 (ENSMUSG00000074886)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	12	1700006A11Rik (MGP_CAROLIEiJ_G0025606)	MGP_CAROLIEiJ_G0025607 #8	Ndst4 (MGP_CAROLIEiJ_G0025608) #9	Ugt8a (MGP_CAROLIEiJ_G0025609) #10	Arsj (MGP_CAROLIEiJ_G0025610) #11	Camk2d (MGP_CAROLIEiJ_G0025611) #12	MGP_CAROLIEiJ_G0025612 #13	MGP_CAROLIEiJ_G0025613 #14	MGP_CAROLIEiJ_G0025614 #15	Zgrf1 (MGP_CAROLIEiJ_G0025615) #16	Neurog2 (MGP_CAROLIEiJ_G0025616) #17	Alpk1 (MGP_CAROLIEiJ_G0025617) #18	Tifa (MGP_CAROLIEiJ_G0025618) #19	Ap1ar (MGP_CAROLIEiJ_G0025619) #20	Fam241a (MGP_CAROLIEiJ_G0025620) #21	Pitx2 (MGP_CAROLIEiJ_G0025621) #22	Enpep (MGP_CAROLIEiJ_G0025622) #23	Elovl6 (MGP_CAROLIEiJ_G0025623) #24	Egf (MGP_CAROLIEiJ_G0025624) #25	Lrit3 (MGP_CAROLIEiJ_G0025625) #26	Rrh (MGP_CAROLIEiJ_G0025626) #27	Gar1 (MGP_CAROLIEiJ_G0025627) #28	Cfi (MGP_CAROLIEiJ_G0025628) #29	Pla2g12a (MGP_CAROLIEiJ_G0025629) #30	Casp6 (MGP_CAROLIEiJ_G0025630) #31	Mcub (MGP_CAROLIEiJ_G0025631) #32	Sec24b (MGP_CAROLIEiJ_G0025632) #33	Col25a1 (MGP_CAROLIEiJ_G0025633) #34	Etnppl (MGP_CAROLIEiJ_G0025634) #35	Ostc (MGP_CAROLIEiJ_G0025635) #36	Rpl34 (MGP_CAROLIEiJ_G0025636) #37
Ryukyu mouse	MODERN SPECIES	4	Hnrnpa0 (MGP_CAROLIEiJ_G0018593)	Klhl3 (MGP_CAROLIEiJ_G0018592)	Spock1 (MGP_CAROLIEiJ_G0018591)	Trpc7 (MGP_CAROLIEiJ_G0018590)	Smad5 (MGP_CAROLIEiJ_G0018589)	Tgfbi (MGP_CAROLIEiJ_G0018588)	Lect2 (MGP_CAROLIEiJ_G0018587)	Fbxl21 (MGP_CAROLIEiJ_G0018586)	Il9 (MGP_CAROLIEiJ_G0018585)	Slc25a48 (MGP_CAROLIEiJ_G0018584)	MGP_CAROLIEiJ_G0018583	Cxcl14 (MGP_CAROLIEiJ_G0018582)	Neurog1 (MGP_CAROLIEiJ_G0018581)	Tifab (MGP_CAROLIEiJ_G0018580) ##19	Macroh2a1 (MGP_CAROLIEiJ_G0018579)	Pitx1 (MGP_CAROLIEiJ_G0018578) #22	Catsper3 (MGP_CAROLIEiJ_G0018577)	Pcbd2 (MGP_CAROLIEiJ_G0018576)	Txndc15 (MGP_CAROLIEiJ_G0018575)	B230219D22Rik (MGP_CAROLIEiJ_G0018574)	Ddx46 (MGP_CAROLIEiJ_G0018573)	Caml (MGP_CAROLIEiJ_G0018572)	B4galt7 (MGP_CAROLIEiJ_G0018571)	Tmed9 (MGP_CAROLIEiJ_G0018570)	Fam193b (MGP_CAROLIEiJ_G0018569)	Ddx41 (MGP_CAROLIEiJ_G0018568)	Dok3 (MGP_CAROLIEiJ_G0018567)	Pdlim7 (MGP_CAROLIEiJ_G0018566)	Dbn1 (MGP_CAROLIEiJ_G0018565)	Prr7 (MGP_CAROLIEiJ_G0018564)	Grk6 (MGP_CAROLIEiJ_G0018563)