Rodentia_A	ANCESTRAL SPECIES	22	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT01050000244827.C.c.a.b	ENSGT00940000154934.B	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Sciuridae	ANCESTRAL SPECIES	34	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT01050000244827.C.c.a.b	ENSGT00940000154934.B	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Marmotini	ANCESTRAL SPECIES	29	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT01050000244827.C.c.a.b	ENSGT00940000154934.B	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.b.b	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B
Marmotini_b	ANCESTRAL SPECIES	39	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT01050000244827.C.c.a.b	ENSGT00940000154934.B	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000165080	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.b.b.a.b.b.q	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B	ENSGT00950000183096.a.a.c.b
Arctic ground squirrel	MODERN SPECIES	625															BRCA2 (ENSUPAG00010011103) #21	ZAR1L (ENSUPAG00010011109) #22	FRY (ENSUPAG00010011114) #23	RXFP2 (ENSUPAG00010011262) #24
Squirrel	MODERN SPECIES	72	ENSSTOG00000020448	SERTM1 (ENSSTOG00000020432)	CCNA1 (ENSSTOG00000003628)	SPART (ENSSTOG00000014775)	CCDC169 (ENSSTOG00000033458)	DCLK1 (ENSSTOG00000012243)	MAB21L1 (ENSSTOG00000009634)	NBEA (ENSSTOG00000012208)	RFC3 (ENSSTOG00000000378)	STARD13 (ENSSTOG00000006622)	KL (ENSSTOG00000024168)	PDS5B (ENSSTOG00000001429)	ENSSTOG00000030222	N4BP2L1 (ENSSTOG00000005584)	ENSSTOG00000005517 #21	ZAR1L (ENSSTOG00000005506) #22	FRY (ENSSTOG00000013718) #23	RXFP2 (ENSSTOG00000010636) #24	B3GLCT (ENSSTOG00000001710)	HSPH1 (ENSSTOG00000001700)	ENSSTOG00000020892	MEDAG (ENSSTOG00000003534)	ALOX5AP (ENSSTOG00000010915)	USPL1 (ENSSTOG00000028023)	ENSSTOG00000000443	KATNAL1 (ENSSTOG00000008802)	UBL3 (ENSSTOG00000012777)	SLC7A1 (ENSSTOG00000012771)	ENSSTOG00000022794	SLC46A3 (ENSSTOG00000013694)	POMP (ENSSTOG00000013687)
Alpin marmot	MODERN SPECIES	13	ENSMMMG00000022597	DCLK1 (ENSMMMG00000022381)	MAB21L1 (ENSMMMG00000022365)	ENSMMMG00000022359	NBEA (ENSMMMG00000022327)	RFC3 (ENSMMMG00000022269)	STARD13 (ENSMMMG00000022235)	KL (ENSMMMG00000022232)	PDS5B (ENSMMMG00000022194)	ENSMMMG00000022169	ENSMMMG00000022166	N4BP2L2 (ENSMMMG00000022165)	ENSMMMG00000022143	N4BP2L1 (ENSMMMG00000022139)	BRCA2 (ENSMMMG00000022103) #21	ZAR1L (ENSMMMG00000022098) #22	FRY (ENSMMMG00000022076) #23	RXFP2 (ENSMMMG00000022035) #24	B3GLCT (ENSMMMG00000022023)	HSPH1 (ENSMMMG00000021945)	ENSMMMG00000021936	TEX26 (ENSMMMG00000021931)	MEDAG (ENSMMMG00000021928)	ALOX5AP (ENSMMMG00000021924)	ENSMMMG00000021912	ENSMMMG00000021875	KATNAL1 (ENSMMMG00000021861)	UBL3 (ENSMMMG00000021836)	SLC7A1 (ENSMMMG00000021811)	ENSMMMG00000021777	SLC46A3 (ENSMMMG00000021759)
Eurasian red squirrel	MODERN SPECIES	13	CCDC169 (ENSSVLG00005009253)	SOHLH2 (ENSSVLG00005009335)	DCLK1 (ENSSVLG00005009476)	NBEA (ENSSVLG00005010027)	MAB21L1 (ENSSVLG00005012010)	ENSSVLG00005012035	ENSSVLG00005012094	STARD13 (ENSSVLG00005012412)	KL (ENSSVLG00005012761)	ENSSVLG00005012836	ENSSVLG00005012874	PDS5B (ENSSVLG00005012920)	ENSSVLG00005013108	N4BP2L1 (ENSSVLG00005013256)	BRCA2 (ENSSVLG00005015076) #21	ZAR1L (ENSSVLG00005019599) #22	FRY (ENSSVLG00005019945) #23	ENSSVLG00005020793	RXFP2 (ENSSVLG00005020815) #24	B3GLCT (ENSSVLG00005021156)	HSPH1 (ENSSVLG00005021367)	ENSSVLG00005021904	TEX26 (ENSSVLG00005022083)	MEDAG (ENSSVLG00005022152)	ALOX5AP (ENSSVLG00005022177)	USPL1 (ENSSVLG00005022232)	ENSSVLG00005022302	KATNAL1 (ENSSVLG00005022343)	UBL3 (ENSSVLG00005022374)	SLC7A1 (ENSSVLG00005022416)	MTUS2 (ENSSVLG00005022484)
Hystricomorpha	ANCESTRAL SPECIES	25	ENSGT00390000016881	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B
Hystricomorpha_a	ANCESTRAL SPECIES	21	ENSGT00390000006573	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B
Hystricomorpha_b	ANCESTRAL SPECIES	48	ENSGT00390000006573	ENSGT00940000157940	ENSGT00390000012235	ENSGT00390000011174	ENSGT00390000016050	ENSGT00940000154956	ENSGT00940000154934.B	ENSGT01050000244827.C.c.a.b	ENSGT00550000075006	ENSGT00950000183061.a.a.b	ENSGT00940000157614.f	ENSGT00940000157257	ENSGT00940000161440	ENSGT00940000161564	ENSGT00390000003602 #21	ENSGT00390000012305.b #22	ENSGT00610000086058.b #23	ENSGT00940000158948.b #24	ENSGT00940000155499	ENSGT00940000157034.gb	ENSGT00940000159635	ENSGT00940000162967	ENSGT00390000009484	ENSGT00390000018451	ENSGT00940000158706	ENSGT00390000002316	ENSGT00950000183120.e.b.a.a.a.n	ENSGT00940000156630	ENSGT00390000004952.b	ENSGT00940000155349	ENSGT00950000183026.B
Degu	MODERN SPECIES	79	ENSODEG00000006935	MAB21L1 (ENSODEG00000019299)	ENSODEG00000008552	NBEA (ENSODEG00000006275)	MCM5 (ENSODEG00000005912)	ENSODEG00000007112	STARD13 (ENSODEG00000006691)	KL (ENSODEG00000006590)	ENSODEG00000019263	PDS5B (ENSODEG00000006819)	ENSODEG00000006412	N4BP2L2 (ENSODEG00000006521)	ENSODEG00000005727	ENSODEG00000009214	ENSODEG00000007088 #21	ZAR1L (ENSODEG00000005981) #22	FRY (ENSODEG00000006572) #23	RXFP2 (ENSODEG00000008146) #24	B3GLCT (ENSODEG00000005559)	ENSODEG00000019264	HSPH1 (ENSODEG00000005577)	ENSODEG00000006248	MEDAG (ENSODEG00000005967)	ALOX5AP (ENSODEG00000005645)	USPL1 (ENSODEG00000007176)	ENSODEG00000006120	KATNAL1 (ENSODEG00000005926)	UBL3 (ENSODEG00000005571)	ENSODEG00000005438	SLC7A1 (ENSODEG00000005306)	ENSODEG00000005871
Long-tailed chinchilla	MODERN SPECIES	138	CCNA1 (ENSCLAG00000004772)	SPART (ENSCLAG00000005026)	CCDC169 (ENSCLAG00000005286)	SOHLH2 (ENSCLAG00000005516)	DCLK1 (ENSCLAG00000006827)	NBEA (ENSCLAG00000005089)	MAB21L1 (ENSCLAG00000017521)	ENSCLAG00000003179	RFC3 (ENSCLAG00000003664)	STARD13 (ENSCLAG00000003814)	KL (ENSCLAG00000004704)	PDS5B (ENSCLAG00000003381)	ENSCLAG00000004607	N4BP2L1 (ENSCLAG00000004721)	BRCA2 (ENSCLAG00000005830) #21	ZAR1L (ENSCLAG00000004947) #22	FRY (ENSCLAG00000005912) #23	RXFP2 (ENSCLAG00000005864) #24	B3GLCT (ENSCLAG00000003709)	ENSCLAG00000017567	HSPH1 (ENSCLAG00000004472)	ENSCLAG00000004125	TEX26 (ENSCLAG00000005302)	MEDAG (ENSCLAG00000005352)	ALOX5AP (ENSCLAG00000005620)	USPL1 (ENSCLAG00000003130)	HMGB1 (ENSCLAG00000003343)	KATNAL1 (ENSCLAG00000003501)	UBL3 (ENSCLAG00000003772)	SLC7A1 (ENSCLAG00000004045)	ENSCLAG00000004626
Naked mole-rat female	MODERN SPECIES	2	MAB21L1 (ENSHGLG00000035394)	ENSHGLG00000004608	ENSHGLG00000013996	ENSHGLG00000021428	ENSHGLG00000019417	ENSHGLG00000021355	ENSHGLG00000032772	ENSHGLG00000018786	KL (ENSHGLG00000005334)	ENSHGLG00000006974	PDS5B (ENSHGLG00000006670)	ENSHGLG00000018160	ENSHGLG00000039341	N4BP2L1 (ENSHGLG00000006971)	BRCA2 (ENSHGLG00000008590) #21	ZAR1L (ENSHGLG00000006253) #22	ENSHGLG00000041019	ENSHGLG00000009415 #23	ENSHGLG00000036768	ENSHGLG00000009276 #24	ENSHGLG00000002160	ENSHGLG00000006352	ENSHGLG00000018220	ENSHGLG00000047678	ENSHGLG00000013471	ENSHGLG00000039932	HSPH1 (ENSHGLG00000006908)	TEX26 (ENSHGLG00000018916)	MEDAG (ENSHGLG00000037818)	ALOX5AP (ENSHGLG00000013689)	USPL1 (ENSHGLG00000036213)