Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00950000186343	ENSGT00940000157330 #35
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000156557 #7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000156557 #7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Canidae	ANCESTRAL SPECIES	34	ENSGT00940000156557 #7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT01030000234985	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000153524.b.a.a #17	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Dog	MODERN SPECIES		SNX9 (ENSCAFG00845000878) #7	SYNJ2 (ENSCAFG00845000995) #8	SERAC1 (ENSCAFG00845001134) #9	GTF2H5 (ENSCAFG00845001194) #10	TULP4 (ENSCAFG00845001243) #11	TMEM181 (ENSCAFG00845001296) #12	DYNLT1 (ENSCAFG00845001317) #13	SYTL3 (ENSCAFG00845001348) #14	EZR (ENSCAFG00845001373) #15	RSPH3 (ENSCAFG00845001431) #16	ENSCAFG00845001443 #17	TAGAP (ENSCAFG00845001461) #18	FNDC1 (ENSCAFG00845001542) #19	SOD2 (ENSCAFG00845001754) #20	WTAP (ENSCAFG00845001806) #21	ACAT2 (ENSCAFG00845001848) #22	TCP1 (ENSCAFG00845001904) #23	MRPL18 (ENSCAFG00845001976) #24	PNLDC1 (ENSCAFG00845001998) #25	MAS1 (ENSCAFG00845002042) #26	IGF2R (ENSCAFG00845002089) #27	SLC22A1 (ENSCAFG00845002132) #28	SLC22A2 (ENSCAFG00845002163) #29	SLC22A3 (ENSCAFG00845002183) #30	PLG (ENSCAFG00845002222) #31	MAP3K4 (ENSCAFG00845002271) #32	AGPAT4 (ENSCAFG00845002356) #33	PRKN (ENSCAFG00845002459) #34	PACRG (ENSCAFG00845002583) #35	QKI (ENSCAFG00845002617) #36	ENSCAFG00845004368 #37
Dingo	MODERN SPECIES	125	SNX9 (ENSCAFG00020015786) #7	SYNJ2 (ENSCAFG00020015809) #8	SERAC1 (ENSCAFG00020016376) #9	TULP4 (ENSCAFG00020017632) #11	ENSCAFG00020017637	TMEM181 (ENSCAFG00020017638) #12	ENSCAFG00020017657 #13	SYTL3 (ENSCAFG00020017661) #14	EZR (ENSCAFG00020017702) #15	RSPH3 (ENSCAFG00020017704) #16	ENSCAFG00020017705 #17	TAGAP (ENSCAFG00020017706) #18	FNDC1 (ENSCAFG00020017707) #19	SOD2 (ENSCAFG00020017714) #20	WTAP (ENSCAFG00020017718) #21	ACAT2 (ENSCAFG00020017725) #22	TCP1 (ENSCAFG00020017729) #23	MRPL18 (ENSCAFG00020017736) #24	PNLDC1 (ENSCAFG00020017742) #25	MAS1 (ENSCAFG00020017759) #26	IGF2R (ENSCAFG00020017822) #27	ENSCAFG00020018698 #28	SLC22A2 (ENSCAFG00020018701) #29	ENSCAFG00020018703	SLC22A3 (ENSCAFG00020018716) #30	ENSCAFG00020018797 #31	MAP3K4 (ENSCAFG00020018821) #32	AGPAT4 (ENSCAFG00020018873) #33	ENSCAFG00020018877 #34	ENSCAFG00020018908 #34	ENSCAFG00020018975 #34
Red fox	MODERN SPECIES	157	ENSVVUG00000007425	SYNJ2 (ENSVVUG00000007407) #8	SERAC1 (ENSVVUG00000007380) #9	TULP4 (ENSVVUG00000007373) #11	TMEM181 (ENSVVUG00000006803) #12	DYNLT1 (ENSVVUG00000006778) #13	SYTL3 (ENSVVUG00000006766) #14	EZR (ENSVVUG00000006757) #15	RSPH3 (ENSVVUG00000006742) #16	ENSVVUG00000006737 ##17	TAGAP (ENSVVUG00000006731) #18	FNDC1 (ENSVVUG00000006697) #19	ENSVVUG00000006676 #20	WTAP (ENSVVUG00000006645) #21	ENSVVUG00000006644	ACAT2 (ENSVVUG00000006634) #22	TCP1 (ENSVVUG00000006612) #23	MRPL18 (ENSVVUG00000006607) #24	PNLDC1 (ENSVVUG00000006586) #25	MAS1 (ENSVVUG00000006583) #26	IGF2R (ENSVVUG00000002250) #27	SLC22A1 (ENSVVUG00000001730) #28	SLC22A2 (ENSVVUG00000001717) #29
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000156557 #7	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34
American mink	MODERN SPECIES	4	ZDHHC14 (ENSNVIG00000009059)	SNX9 (ENSNVIG00000009085) #7	SYNJ2 (ENSNVIG00000009140) #8	SERAC1 (ENSNVIG00000009167) #9	TF2H5 (ENSNVIG00000009285) #10	TULP4 (ENSNVIG00000009306) #11	TMEM181 (ENSNVIG00000009381) #12	DYNLT1 (ENSNVIG00000009650) #13	SYTL3 (ENSNVIG00000009680) #14	EZR (ENSNVIG00000009830) #15	TAGAP (ENSNVIG00000009891) #18	FNDC1 (ENSNVIG00000009936) #19	ENSNVIG00000010133	SODM (ENSNVIG00000010142) #20	WTAP (ENSNVIG00000010202) #21	ACAT2 (ENSNVIG00000010262) #22	TCP1 (ENSNVIG00000010276) #23	RM18 (ENSNVIG00000010351) #24	PNLDC1 (ENSNVIG00000010375) #25	MAS1 (ENSNVIG00000010425) #26	IGF2R (ENSNVIG00000010447) #27	SLC22A1 (ENSNVIG00000010572) #28	SLC22A2 (ENSNVIG00000010662) #29	SLC22A3 (ENSNVIG00000010693) #30	ENSNVIG00000010704 #31	MAP3K4 (ENSNVIG00000010747) #32	ENSNVIG00000010894	AGPAT4 (ENSNVIG00000010903) #33	ENSNVIG00000010918 #34
Ferret	MODERN SPECIES	321	ZDHHC14 (ENSMPUG00000005351)	SNX9 (ENSMPUG00000005333) #7	SYNJ2 (ENSMPUG00000005323) #8	SERAC1 (ENSMPUG00000005304) #9	GTF2H5 (ENSMPUG00000005299) #10	TULP4 (ENSMPUG00000005290) #11	TMEM181 (ENSMPUG00000005207) #12	DYNLT1 (ENSMPUG00000005205) #13	SYTL3 (ENSMPUG00000005195) #14	EZR (ENSMPUG00000005183) #15	RSPH3 (ENSMPUG00000005176) #16	TAGAP (ENSMPUG00000005167) #18	FNDC1 (ENSMPUG00000005104) #19	SOD2 (ENSMPUG00000005045) #20	WTAP (ENSMPUG00000005036) #21	ACAT2 (ENSMPUG00000005030) #22	TCP1 (ENSMPUG00000005020) #23	MRPL18 (ENSMPUG00000005009) #24	PNLDC1 (ENSMPUG00000004920) #25	MAS1 (ENSMPUG00000019617) #26	ENSMPUG00000019615	IGF2R (ENSMPUG00000004888) #27	SLC22A1 (ENSMPUG00000004685) #28	SLC22A2 (ENSMPUG00000004670) #29	SLC22A3 (ENSMPUG00000004654) #30	ENSMPUG00000004632 #31	MAP3K4 (ENSMPUG00000004612) #32	AGPAT4 (ENSMPUG00000004604) #33	ENSMPUG00000004601 #34	ENSMPUG00000004595	ENSMPUG00000004593 #34
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000179662	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00950000186188	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Giant Panda	MODERN SPECIES	1	SNX9 (ENSAMEG00000009626) #7	SYNJ2 (ENSAMEG00000009581) #8	SERAC1 (ENSAMEG00000009567) #9	GTF2H5 (ENSAMEG00000028196) #10	TULP4 (ENSAMEG00000009544) #11	ENSAMEG00000025985	TMEM181 (ENSAMEG00000009492) #12	DYNLT1 (ENSAMEG00000009483) #13	SYTL3 (ENSAMEG00000009448) #14	EZR (ENSAMEG00000009395) #15	RSPH3 (ENSAMEG00000009373) #16	TAGAP (ENSAMEG00000009357) #18	FNDC1 (ENSAMEG00000003564) #19	ENSAMEG00000015466 #20	WTAP (ENSAMEG00000025264) #21	ACAT2 (ENSAMEG00000015430) #22	TCP1 (ENSAMEG00000015405) #23	MRPL18 (ENSAMEG00000015398) #24	PNLDC1 (ENSAMEG00000015371) #25	MAS1 (ENSAMEG00000019584) #26	IGF2R (ENSAMEG00000015172) #27	SLC22A1 (ENSAMEG00000015110) #28	SLC22A2 (ENSAMEG00000015045) #29	SLC22A3 (ENSAMEG00000015037) #30	ENSAMEG00000015960 #31	MAP3K4 (ENSAMEG00000015908) #32	ENSAMEG00000015885 #33	PRKN (ENSAMEG00000015876) #34	PACRG (ENSAMEG00000008449) #35	QKI (ENSAMEG00000008459) #36	ENSAMEG00000027289 #36
Ursus	ANCESTRAL SPECIES	81	ENSGT00940000179662	ENSGT00940000160715.e #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00950000186188	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00970000197976	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
American black bear	MODERN SPECIES	5145																ENSUAMG00000015931 #22	TCP1 (ENSUAMG00000015793) #23	MRPL18 (ENSUAMG00000015786) #24	PNLDC1 (ENSUAMG00000015783) #25	MAS1 (ENSUAMG00000015780) #26
Polar bear	MODERN SPECIES	150	SYNJ2 (ENSUMAG00000012826) #8	SERAC1 (ENSUMAG00000012320) #9	GTF2H5 (ENSUMAG00000012271) #10	TULP4 (ENSUMAG00000012196) #11	ENSUMAG00000012177	TMEM181 (ENSUMAG00000012155) #12	DYNLT1 (ENSUMAG00000012151) #13	SYTL3 (ENSUMAG00000012070) #14	EZR (ENSUMAG00000012047) #15	RSPH3 (ENSUMAG00000012040) #16	TAGAP (ENSUMAG00000012036) #18	FNDC1 (ENSUMAG00000011974) #19	SOD2 (ENSUMAG00000011961) #20	WTAP (ENSUMAG00000011957) #21	ENSUMAG00000011954	ACAT2 (ENSUMAG00000011942) #22	TCP1 (ENSUMAG00000011924) #23	MRPL18 (ENSUMAG00000011916) #24	PNLDC1 (ENSUMAG00000011903) #25	MAS1 (ENSUMAG00000011898) #26	IGF2R (ENSUMAG00000011876) #27	SLC22A1 (ENSUMAG00000011827) #28	SLC22A2 (ENSUMAG00000011818) #29	SLC22A3 (ENSUMAG00000011813) #30	ENSUMAG00000011793 #31	MAP3K4 (ENSUMAG00000011760) #32	AGPAT4 (ENSUMAG00000011739) #33	ENSUMAG00000011729 #34	ENSUMAG00000011710	ENSUMAG00000011702 #34	ENSUMAG00000011694
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.n #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.n #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
lion	MODERN SPECIES	5	SYNJ2 (ENSPLOG00000002967) #8	ENSPLOG00000003092	SERAC1 (ENSPLOG00000003108) #9	GTF2H5 (ENSPLOG00000003144) #10	TULP4 (ENSPLOG00000003250) #11	ENSPLOG00000003310	TMEM181 (ENSPLOG00000003343) #12	DYNLT1 (ENSPLOG00000003373) #13	SYTL3 (ENSPLOG00000003399) #14	EZR (ENSPLOG00000003444) #15	RSPH3 (ENSPLOG00000003506) #16	TAGAP (ENSPLOG00000003565) #18	FNDC1 (ENSPLOG00000003601) #19	SOD2 (ENSPLOG00000003669) #20	WTAP (ENSPLOG00000003697) #21	ACAT2 (ENSPLOG00000003718) #22	TCP1 (ENSPLOG00000003746) #23	MRPL18 (ENSPLOG00000003790) #24	PNLDC1 (ENSPLOG00000003816) #25	MAS1 (ENSPLOG00000003857) #26	IGF2R (ENSPLOG00000003880) #27	SLC22A1 (ENSPLOG00000004002) #28	SLC22A2 (ENSPLOG00000004027) #29	SLC22A3 (ENSPLOG00000004048) #30	ENSPLOG00000004061 #31	ENSPLOG00000004079 #31	ENSPLOG00000004087 #31	MAP3K4 (ENSPLOG00000004139) #32	AGPAT4 (ENSPLOG00000004245) #33	PRKN (ENSPLOG00000004285) #34	PACRG (ENSPLOG00000004324) #35
leopard	MODERN SPECIES	59	ZDHHC14 (ENSPPRG00000009654)	SNX9 (ENSPPRG00000009191) #7	SYNJ2 (ENSPPRG00000009068) #8	ENSPPRG00000016782	SERAC1 (ENSPPRG00000007784) #9	GTF2H5 (ENSPPRG00000007199) #10	TULP4 (ENSPPRG00000006978) #11	TMEM181 (ENSPPRG00000006100) #12	DYNLT1 (ENSPPRG00000005411) #13	SYTL3 (ENSPPRG00000004402) #14	EZR (ENSPPRG00000002344) #15	RSPH3 (ENSPPRG00000001447) #16	ENSPPRG00000000588 #18	SOD2 (ENSPPRG00000019418) #20	WTAP (ENSPPRG00000016764) #21	ACAT2 (ENSPPRG00000014607) #22	TCP1 (ENSPPRG00000014032) #23	MRPL18 (ENSPPRG00000013063) #24	PNLDC1 (ENSPPRG00000012854) #25	MAS1 (ENSPPRG00000016120) #26	IGF2R (ENSPPRG00000010975) #27	SLC22A1 (ENSPPRG00000009083) #28	SLC22A2 (ENSPPRG00000008200) #29	SLC22A3 (ENSPPRG00000007817) #30	ENSPPRG00000007637 #31	MAP3K4 (ENSPPRG00000007372) #32	AGPAT4 (ENSPPRG00000003125) #33	PRKN (ENSPPRG00000002801) #34	PACRG (ENSPPRG00000018305) #35	QKI (ENSPPRG00000013383) #36	C6orf118 (ENSPPRG00000012423)
Tiger	MODERN SPECIES	551	ZDHHC14 (ENSPTIG00000014488)	SNX9 (ENSPTIG00000016966) #7	SYNJ2 (ENSPTIG00000018780) #8	ENSPTIG00000005689 #9	GTF2H5 (ENSPTIG00000006736) #10	TULP4 (ENSPTIG00000007104) #11	TMEM181 (ENSPTIG00000011656) #12	DYNLT1 (ENSPTIG00000015848) #13	SYTL3 (ENSPTIG00000016444) #14	EZR (ENSPTIG00000003011) #15	RSPH3 (ENSPTIG00000010790) #16	ENSPTIG00000013679 #18	ENSPTIG00000014899 #18	SOD2 (ENSPTIG00000018855) #20	WTAP (ENSPTIG00000004824) #21	ACAT2 (ENSPTIG00000006762) #22	TCP1 (ENSPTIG00000007384) #23	MRPL18 (ENSPTIG00000010107) #24	PNLDC1 (ENSPTIG00000011501) #25	MAS1 (ENSPTIG00000001177) #26	ENSPTIG00000014351	IGF2R (ENSPTIG00000015202) #27	SLC22A1 (ENSPTIG00000019426) #28	SLC22A2 (ENSPTIG00000006985) #29	SLC22A3 (ENSPTIG00000008644) #30	ENSPTIG00000010411 #31	MAP3K4 (ENSPTIG00000017590) #32	AGPAT4 (ENSPTIG00000021603) #33	PRKN (ENSPTIG00000021925) #34	PACRG (ENSPTIG00000004368) #35	ENSPTIG00000007481
Cat	MODERN SPECIES	236	ZDHHC14 (ENSFCAG00000006280)	SNX9 (ENSFCAG00000010853) #7	SYNJ2 (ENSFCAG00000010854) #8	SERAC1 (ENSFCAG00000010855) #9	GTF2H5 (ENSFCAG00000034208) #10	TULP4 (ENSFCAG00000007987) #11	TMEM181 (ENSFCAG00000007988) #12	DYNLT1 (ENSFCAG00000007990) #13	SYTL3 (ENSFCAG00000007991) #14	EZR (ENSFCAG00000007992) #15	RSPH3 (ENSFCAG00000028166) #16	TAGAP (ENSFCAG00000014702) #18	FNDC1 (ENSFCAG00000022317) #19	SOD2 (ENSFCAG00000002843) #20	WTAP (ENSFCAG00000002844) #21	ACAT2 (ENSFCAG00000002845) #22	TCP1 (ENSFCAG00000002846) #23	MRPL18 (ENSFCAG00000002847) #24	PNLDC1 (ENSFCAG00000002848) #25	MAS1 (ENSFCAG00000002849) #26	IGF2R (ENSFCAG00000002850) #27	SLC22A1 (ENSFCAG00000002851) #28	SLC22A2 (ENSFCAG00000002852) #29	SLC22A3 (ENSFCAG00000000355) #30	PLG (ENSFCAG00000023975) #31	MAP3K4 (ENSFCAG00000000356) #32	ENSFCAG00000038094	AGPAT4 (ENSFCAG00000000357) #33	PRKN (ENSFCAG00000038081) #34	ENSFCAG00000034013	PACRG (ENSFCAG00000028010) #35
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Equus	ANCESTRAL SPECIES	46	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Donkey	MODERN SPECIES	20	SNX9 (ENSEASG00005018899) #7	SYNJ2 (ENSEASG00005018902) #8	SERAC1 (ENSEASG00005018908) #9	ENSEASG00005032334 #10	TULP4 (ENSEASG00005018912) #11	TMEM181 (ENSEASG00005018921) #12	DYNLT1 (ENSEASG00005018942) #13	SYTL3 (ENSEASG00005018960) #14	EZR (ENSEASG00005018988) #15	RSPH3 (ENSEASG00005018991) #16	TAGAP (ENSEASG00005018994) #18	FNDC1 (ENSEASG00005019003) #19	ENSEASG00005019012 #20	ENSEASG00005023660 ##21	WTAP (ENSEASG00005024385) #21	ACAT2 (ENSEASG00005019019) #22	TCP1 (ENSEASG00005019021) #23	ENSEASG00005028667 #24	PNLDC1 (ENSEASG00005019029) #25	MAS1 (ENSEASG00005019033) #26	IGF2R (ENSEASG00005019232) #27	SLC22A1 (ENSEASG00005019667) #28	SLC22A2 (ENSEASG00005019670) #29	SLC22A3 (ENSEASG00005019679) #30	ENSEASG00005019697 #31	MAP3K4 (ENSEASG00005019701) #32	ENSEASG00005019709	ENSEASG00005019711 #33	PRKN (ENSEASG00005019721) #34	PACRG (ENSEASG00005019723) #35	QKI (ENSEASG00005019724) #36
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Megabat	MODERN SPECIES	4031														SOD2 (ENSPVAG00000005302) #20	WTAP (ENSPVAG00000005310) #21	ACAT2 (ENSPVAG00000005312) #22	TCP1 (ENSPVAG00000005316) #23	MRPL18 (ENSPVAG00000005322) #24	PNLDC1 (ENSPVAG00000005325) #25	MAS1 (ENSPVAG00000005330) #26	IGF2R (ENSPVAG00000005331) #27	SLC22A1 (ENSPVAG00000005337) #28
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Greater horseshoe bat	MODERN SPECIES	21	SYNJ2 (ENSRFEG00010020202) #8	SERAC1 (ENSRFEG00010020518) #9	GTF2H5 (ENSRFEG00010005282) #10	TULP4 (ENSRFEG00010005329) #11	TMEM181 (ENSRFEG00010005412) #12	ENSRFEG00010005488	ENSRFEG00010005510 #13	ENSRFEG00010005541 #14	ENSRFEG00010005565 #14	EZR (ENSRFEG00010005668) #15	RSPH3 (ENSRFEG00010005806) #16	TAGAP (ENSRFEG00010005835) #18	FNDC1 (ENSRFEG00010005884) #19	SOD2 (ENSRFEG00010005963) #20	ENSRFEG00010006054 #21	ACAT2 (ENSRFEG00010006101) #22	ENSRFEG00010006182 #23	MRPL18 (ENSRFEG00010006349) #24	PNLDC1 (ENSRFEG00010006385) #25	MAS1 (ENSRFEG00010006507) #26	IGF2R (ENSRFEG00010006536) #27	SLC22A1 (ENSRFEG00010006710) #28	SLC22A2 (ENSRFEG00010006879) #29	ENSRFEG00010007005	SLC22A3 (ENSRFEG00010007045) #30	ENSRFEG00010007176 #31	MAP3K4 (ENSRFEG00010007347) #32	AGPAT4 (ENSRFEG00010008317) #33	PRKN (ENSRFEG00010008431) #34	PACRG (ENSRFEG00010008690) #35	QKI (ENSRFEG00010008753) #36
Microbat	MODERN SPECIES	1439										ENSMLUG00000001931 #15	RSPH3 (ENSMLUG00000012768) #16	TAGAP (ENSMLUG00000012777) #18	FNDC1 (ENSMLUG00000029080) #19	SOD2 (ENSMLUG00000012242) #20	WTAP (ENSMLUG00000000721) #21	ACAT2 (ENSMLUG00000000725) #22	TCP1 (ENSMLUG00000000732) #23	MRPL18 (ENSMLUG00000000743) #24	PNLDC1 (ENSMLUG00000000747) #25
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00950000186343	ENSGT00940000157330 #35
Suina	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00940000156543
Chacoan peccary	MODERN SPECIES	58	ZDHHC14 (ENSCWAG00000003840)	SNX9 (ENSCWAG00000003804) #7	SYNJ2 (ENSCWAG00000003712) #8	SERAC1 (ENSCWAG00000003601) #9	GTF2H5 (ENSCWAG00000003578) #10	TULP4 (ENSCWAG00000003534) #11	TMEM181 (ENSCWAG00000003377) #12	DYNLT1 (ENSCWAG00000003343) #13	SYTL3 (ENSCWAG00000003293) #14	EZR (ENSCWAG00000003256) #15	RSPH3 (ENSCWAG00000003227) #16	ENSCWAG00000003211 #18	FNDC1 (ENSCWAG00000003188) #19	SOD2 (ENSCWAG00000003162) #20	WTAP (ENSCWAG00000003142) #21	ACAT2 (ENSCWAG00000003116) #22	TCP1 (ENSCWAG00000003074) #23	MRPL18 (ENSCWAG00000003059) #24	PNLDC1 (ENSCWAG00000003002) #25	ENSCWAG00000002985	MAS1 (ENSCWAG00000002975) #26	IGF2R (ENSCWAG00000002925) #27	SLC22A1 (ENSCWAG00000002901) #28	SLC22A2 (ENSCWAG00000002880) #29	SLC22A3 (ENSCWAG00000002861) #30	ENSCWAG00000002821 #31	MAP3K4 (ENSCWAG00000002506) #32	AGPAT4 (ENSCWAG00000002443) #33	ENSCWAG00000002429 #34
Pig	MODERN SPECIES		ZDHHC14 (ENSSSCG00000035027)	SNX9 (ENSSSCG00000030535) #7	SYNJ2 (ENSSSCG00000012315) #8	SERAC1 (ENSSSCG00000012314) #9	GTF2H5 (ENSSSCG00000024019) #10	ENSSSCG00000031776 #11	TMEM181 (ENSSSCG00000024876) #12	DYNLT1 (ENSSSCG00000033107) #13	SYTL3 (ENSSSCG00000004057) #14	EZR (ENSSSCG00000004058) #15	RSPH3 (ENSSSCG00000004055) #16	TAGAP (ENSSSCG00000004053) #18	FNDC1 (ENSSSCG00000004052) #19	SOD2 (ENSSSCG00000040317) #20	WTAP (ENSSSCG00000004050) #21	ACAT2 (ENSSSCG00000004049) #22	TCP1 (ENSSSCG00000004048) #23	MRPL18 (ENSSSCG00000004047) #24	PNLDC1 (ENSSSCG00000004046) #25	MAS1 (ENSSSCG00000059431) #26	IGF2R (ENSSSCG00000004044) #27	SLC22A1 (ENSSSCG00000004041) #28	SLC22A2 (ENSSSCG00000004040) #29	SLC22A3 (ENSSSCG00000004039) #30	PLG (ENSSSCG00000004038) #31	MAP3K4 (ENSSSCG00000004037) #32	AGPAT4 (ENSSSCG00000004033) #33	ENSSSCG00000053549	PRKN (ENSSSCG00000004032) #34	ENSSSCG00000047165	PACRG (ENSSSCG00000038153) #35
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00950000186343	ENSGT00940000157330 #35
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000156483	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Arabian camel	MODERN SPECIES	34	ZDHHC14 (ENSCDRG00005018018)	SNX9 (ENSCDRG00005017884) #7	SYNJ2 (ENSCDRG00005016839) #8	SERAC1 (ENSCDRG00005016470) #9	GTF2H5 (ENSCDRG00005016408) #10	ENSCDRG00005016299 #11	TMEM181 (ENSCDRG00005015875) #12	ENSCDRG00005015822 #13	SYTL3 (ENSCDRG00005015709) #14	ENSCDRG00005015561 #15	RSPH3 (ENSCDRG00005015431) #16	TAGAP (ENSCDRG00005015381) #18	FNDC1 (ENSCDRG00005015292) #19	MnSOD (ENSCDRG00005015180) #20	WTAP (ENSCDRG00005015081) #21	ACAT2 (ENSCDRG00005015012) #22	TCP1 (ENSCDRG00005014875) #23	MRPL18 (ENSCDRG00005014810) #24	PNLDC1 (ENSCDRG00005014558) #25	MAS1 (ENSCDRG00005014532) #26	IGF2R (ENSCDRG00005014304) #27	SLC22A1 (ENSCDRG00005014227) #28	SLC22A2 (ENSCDRG00005014141) #29	SLC22A3 (ENSCDRG00005014054) #30	ENSCDRG00005013803 #31	MAP3K4 (ENSCDRG00005011806) #32	AGPAT4 (ENSCDRG00005011648) #33	PRKN (ENSCDRG00005010399) #34	PACRG (ENSCDRG00005010327) #35	QKI (ENSCDRG00005010246) #36	C6orf118 (ENSCDRG00005010197)
Alpaca	MODERN SPECIES	3586														SOD2 (ENSVPAG00000008201) #20	WTAP (ENSVPAG00000008205) #21	ACAT2 (ENSVPAG00000008207) #22	TCP1 (ENSVPAG00000008209) #23	MRPL18 (ENSVPAG00000008211) #24	ENSVPAG00000008213
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00950000186343	ENSGT00940000157330 #35
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT01010000229882	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00950000186343	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT01010000229882	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT01010000229882	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36	ENSGT00390000009877
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT01010000229882	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT01010000229882	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT00950000182836.b.b.b.b #33	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Beluga whale	MODERN SPECIES	80	SNX9 (ENSDLEG00000012695) #7	SYNJ2 (ENSDLEG00000012744) #8	SERAC1 (ENSDLEG00000012822) #9	GTF2H5 (ENSDLEG00000012851) #10	TULP4 (ENSDLEG00000012862) #11	TMEM181 (ENSDLEG00000012897) #12	DYNLT1 (ENSDLEG00000012925) #13	SYTL3 (ENSDLEG00000012934) #14	EZR (ENSDLEG00000012951) #15	RSPH3 (ENSDLEG00000013000) #16	TAGAP (ENSDLEG00000013116) #18	ENSDLEG00000013131 #19	ENSDLEG00000013163	SOD2 (ENSDLEG00000013188) #20	WTAP (ENSDLEG00000013205) #21	ACAT2 (ENSDLEG00000013224) #22	TCP1 (ENSDLEG00000013249) #23	MRPL18 (ENSDLEG00000013282) #24	PNLDC1 (ENSDLEG00000013298) #25	MAS1 (ENSDLEG00000013351) #26	IGF2R (ENSDLEG00000013373) #27	SLC22A1 (ENSDLEG00000013591) #28	SLC22A2 (ENSDLEG00000013647) #29	SLC22A3 (ENSDLEG00000013670) #30	PLG (ENSDLEG00000013736) #31	MAP3K4 (ENSDLEG00000013778) #32	AGPAT4 (ENSDLEG00000013962) #33	ENSDLEG00000014031	ENSDLEG00000014046	ENSDLEG00000014063	ENSDLEG00000014077 #35
Narwhal	MODERN SPECIES	301	SYNJ2 (ENSMMNG00015010674) #8	SERAC1 (ENSMMNG00015010803) #9	GTF2H5 (ENSMMNG00015010910) #10	TULP4 (ENSMMNG00015010941) #11	ENSMMNG00015010987	TMEM181 (ENSMMNG00015011008) #12	ENSMMNG00015011048 #13	SYTL3 (ENSMMNG00015011069) #14	EZR (ENSMMNG00015011090) #15	RSPH3 (ENSMMNG00015011129) #16	TAGAP (ENSMMNG00015011155) #18	FNDC1 (ENSMMNG00015011181) #19	ENSMMNG00015011212	SOD2 (ENSMMNG00015011230) #20	WTAP (ENSMMNG00015011260) #21	ACAT2 (ENSMMNG00015011293) #22	TCP1 (ENSMMNG00015011321) #23	MRPL18 (ENSMMNG00015011349) #24	PNLDC1 (ENSMMNG00015011367) #25	MAS1 (ENSMMNG00015011391) #26	IGF2R (ENSMMNG00015011406) #27	SLC22A1 (ENSMMNG00015011429) #28	ENSMMNG00015011446	SLC22A2 (ENSMMNG00015011459) #29	SLC22A3 (ENSMMNG00015011477) #30	ENSMMNG00015011493 #31	MAP3K4 (ENSMMNG00015011572) #32	AGPAT4 (ENSMMNG00015011728) #33	ENSMMNG00015011816	PACRG (ENSMMNG00015011827) #35	QKI (ENSMMNG00015011839) #36
Vaquita	MODERN SPECIES	3	ENSPSNG00000020609	SYNJ2 (ENSPSNG00000020311) #8	SERAC1 (ENSPSNG00000020095) #9	GTF2H5 (ENSPSNG00000020011) #10	TULP4 (ENSPSNG00000019944) #11	TMEM181 (ENSPSNG00000019785) #12	ENSPSNG00000019724 #13	SYTL3 (ENSPSNG00000019533) #14	EZR (ENSPSNG00000019386) #15	RSPH3 (ENSPSNG00000019104) #16	TAGAP (ENSPSNG00000018854) #18	FNDC1 (ENSPSNG00000018682) #19	ENSPSNG00000018560	SOD2 (ENSPSNG00000018468) #20	WTAP (ENSPSNG00000018363) #21	ACAT2 (ENSPSNG00000018304) #22	TCP1 (ENSPSNG00000018222) #23	MRPL18 (ENSPSNG00000018155) #24	PNLDC1 (ENSPSNG00000017839) #25	MAS1 (ENSPSNG00000017797) #26	IGF2R (ENSPSNG00000017592) #27	ENSPSNG00000017517 #28	ENSPSNG00000017468	SLC22A2 (ENSPSNG00000017306) #29	SLC22A3 (ENSPSNG00000017154) #30	ENSPSNG00000016905 #31	MAP3K4 (ENSPSNG00000016678) #32	AGPAT4 (ENSPSNG00000016495) #33	ENSPSNG00000016413	ENSPSNG00000016356	PRKN (ENSPSNG00000015749) #34
Dolphin	MODERN SPECIES	3445														ENSTTRG00000010355 #20	WTAP (ENSTTRG00000010379) #21	ACAT2 (ENSTTRG00000010389) #22	TCP1 (ENSTTRG00000010393) #23	MRPL18 (ENSTTRG00000010404) #24	PNLDC1 (ENSTTRG00000010409) #25
Sperm whale	MODERN SPECIES	421																ACAT2 (ENSPCTG00005022140) #22	ENSPCTG00005022124 #23	MRPL18 (ENSPCTG00005022113) #24	PNLDC1 (ENSPCTG00005022102) #25
Blue whale	MODERN SPECIES	3	SYNJ2 (ENSBMSG00010011701) #8	SERAC1 (ENSBMSG00010011654) #9	GTF2H5 (ENSBMSG00010011624) #10	TULP4 (ENSBMSG00010011601) #11	ENSBMSG00010011592	TMEM181 (ENSBMSG00010011555) #12	ENSBMSG00010011520 #13	SYTL3 (ENSBMSG00010011475) #14	EZR (ENSBMSG00010011421) #15	RSPH3 (ENSBMSG00010011388) #16	TAGAP (ENSBMSG00010011351) #18	FNDC1 (ENSBMSG00010011227) #19	ENSBMSG00010011186	ENSBMSG00010011159 #20	ENSBMSG00010011125 #21	ACAT2 (ENSBMSG00010011102) #22	TCP1 (ENSBMSG00010011064) #23	MRPL18 (ENSBMSG00010011042) #24	PNLDC1 (ENSBMSG00010010984) #25	MAS1 (ENSBMSG00010010947) #26	IGF2R (ENSBMSG00010010889) #27	ENSBMSG00010010858	SLC22A1 (ENSBMSG00010010839) #28	SLC22A2 (ENSBMSG00010010814) #29	SLC22A3 (ENSBMSG00010010779) #30	ENSBMSG00010010741 #31	MAP3K4 (ENSBMSG00010010709) #32	AGPAT4 (ENSBMSG00010010688) #33	ENSBMSG00010010664	PRKN (ENSBMSG00010010461) #34	ENSBMSG00010010418
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Yarkand deer	MODERN SPECIES	18	GTF2H5 (ENSCHYG00000017957) #10	TULP4 (ENSCHYG00000018070) #11	ENSCHYG00000018795	ENSCHYG00000018828	TMEM181 (ENSCHYG00000018947) #12	ENSCHYG00000020249	ENSCHYG00000020272 #13	SYTL3 (ENSCHYG00000020333) #14	ENSCHYG00000020511 #15	RSPH3 (ENSCHYG00000020694) #16	TAGAP (ENSCHYG00000020890) #18	ENSCHYG00000021069	FNDC1 (ENSCHYG00000021187) #19	ENSCHYG00000022090 #20	WTAP (ENSCHYG00000022403) #21	ACAT2 (ENSCHYG00000022487) #22	TCP1 (ENSCHYG00000022554) #23	MRPL18 (ENSCHYG00000022773) #24	PNLDC1 (ENSCHYG00000022800) #25	MAS1 (ENSCHYG00000022925) #26	IGF2R (ENSCHYG00000023202) #27	SLC22A1 (ENSCHYG00000025285) #28	SLC22A2 (ENSCHYG00000025351) #29	SLC22A3 (ENSCHYG00000025420) #30	ENSCHYG00000025465 #31	MAP3K4 (ENSCHYG00000025579) #32	AGPAT4 (ENSCHYG00000025772) #33	PRKN (ENSCHYG00000025824) #34	PACRG (ENSCHYG00000025979) #35	QKI (ENSCHYG00000026014) #36	C6orf118 (ENSCHYG00000026045)
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000156557 #7	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00940000157993.l #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.l #18	ENSGT00530000063558.B #19	ENSGT00390000013558.z	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.d #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Goat	DUPLICATION
Goat	MODERN SPECIES	5	FABP9 (ENSCHIG00000013859)	PMP2 (ENSCHIG00000017466)	ENSCHIG00000022058	PAG1 (ENSCHIG00000005882)	ZNF704 (ENSCHIG00000009329)	ZBTB10 (ENSCHIG00000008950)	TPD52 (ENSCHIG00000016090)	MRPS28 (ENSCHIG00000018727)	HEY1 (ENSCHIG00000021515)	STMN2 (ENSCHIG00000014257)	ENSCHIG00000022803	IL7 (ENSCHIG00000013214)	ZC2HC1A (ENSCHIG00000022396)	PKIA (ENSCHIG00000022780)	ENSCHIG00000026486	ENSCHIG00000017797 #22	ENSCHIG00000012572	ENSCHIG00000024972	PEX2 (ENSCHIG00000011681)	ZFHX4 (ENSCHIG00000017123)	ENSCHIG00000020169	HNF4G (ENSCHIG00000001150)	CRISPLD1 (ENSCHIG00000016652)	PI15 (ENSCHIG00000016089)	GDAP1 (ENSCHIG00000006756)	JPH1 (ENSCHIG00000017967)	ENSCHIG00000017122	LY96 (ENSCHIG00000012530)	TMEM70 (ENSCHIG00000019890)	ELOC (ENSCHIG00000015198)	UBE2W (ENSCHIG00000025248)
Goat	MODERN SPECIES	28	SYNJ2 (ENSCHIG00000011077) #8	SERAC1 (ENSCHIG00000013202) #9	GTF2H5 (ENSCHIG00000000966) #10	TULP4 (ENSCHIG00000003373) #11	TMEM181 (ENSCHIG00000023369) #12	DYNLT1 (ENSCHIG00000026680) #13	SYTL3 (ENSCHIG00000016283) #14	EZR (ENSCHIG00000017900) #15	RSPH3 (ENSCHIG00000018819) #16	TAGAP (ENSCHIG00000008817) #18	FNDC1 (ENSCHIG00000023614) #19	ENSCHIG00000020625	ENSCHIG00000010882	SOD2 (ENSCHIG00000009947) #20	ENSCHIG00000026430 #21	ENSCHIG00000017426 #22	TCP1 (ENSCHIG00000016503) #23	ENSCHIG00000023286 #24	PNLDC1 (ENSCHIG00000003141) #25	MAS1 (ENSCHIG00000012964) #26	IGF2R (ENSCHIG00000010830) #27	SLC22A1 (ENSCHIG00000014819) #28	SLC22A2 (ENSCHIG00000006824) #29	SLC22A3 (ENSCHIG00000021136) #30	ENSCHIG00000011198 #31	MAP3K4 (ENSCHIG00000009330) #32	ENSCHIG00000024395	AGPAT4 (ENSCHIG00000016729) #33	ENSCHIG00000020982 #34	ENSCHIG00000025260 #34	ENSCHIG00000016416 #34
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	25	FABP4 (ENSOARG00020017607)	FABP9 (ENSOARG00020017569)	PMP2 (ENSOARG00020017455)	ENSOARG00020017413	PAG1 (ENSOARG00020017273)	ZNF704 (ENSOARG00020017158)	ENSOARG00020017111	ZBTB10 (ENSOARG00020016760)	MRPS28 (ENSOARG00020016516)	HEY1 (ENSOARG00020016436)	STMN2 (ENSOARG00020016309)	ENSOARG00020016227	IL7 (ENSOARG00020016028)	ZC2HC1A (ENSOARG00020015884)	ENSOARG00020015830	ENSOARG00020015780 #22	ENSOARG00020015710	PEX2 (ENSOARG00020015627)	ENSOARG00020015601	ZFHX4 (ENSOARG00020015358)	HNF4G (ENSOARG00020015145)	CRISPLD1 (ENSOARG00020014832)	PI15 (ENSOARG00020014740)	GDAP1 (ENSOARG00020014639)	JPH1 (ENSOARG00020014507)	ENSOARG00020014381	ENSOARG00020014341	ENSOARG00020014317	LY96 (ENSOARG00020014177)	TMEM70 (ENSOARG00020014121)	ENSOARG00020014058
Rambouillet Sheep	MODERN SPECIES	24	RPS25 (ENSOARG00020004228)	SYNJ2 (ENSOARG00020004254) #8	SERAC1 (ENSOARG00020004385) #9	GTF2H5 (ENSOARG00020004781) #10	TULP4 (ENSOARG00020004840) #11	TMEM181 (ENSOARG00020005095) #12	DYNLT1 (ENSOARG00020005652) #13	SYTL3 (ENSOARG00020005678) #14	ENSOARG00020005804 #15	RSPH3 (ENSOARG00020005842) #16	TAGAP (ENSOARG00020005923) #18	ENSOARG00020005992	ENSOARG00020006017	SOD2 (ENSOARG00020006059) #20	WTAP (ENSOARG00020006133) #21	ENSOARG00020006176 #22	TCP1 (ENSOARG00020006218) #23	MRPL18 (ENSOARG00020006305) #24	PNLDC1 (ENSOARG00020006365) #25	MAS1 (ENSOARG00020006641) #26	IGF2R (ENSOARG00020007810) #27	SLC22A1 (ENSOARG00020025899) #28	SLC22A2 (ENSOARG00020025906) #29	SLC22A3 (ENSOARG00020025917) #30	ENSOARG00020025929 #31	MAP3K4 (ENSOARG00020025996) #32	AGPAT4 (ENSOARG00020026075) #33	PRKN (ENSOARG00020026093) #34	PACRG (ENSOARG00020026098) #35	ENSOARG00020026099	QKI (ENSOARG00020026100) #36
Bovinae	ANCESTRAL SPECIES	35	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00940000157993.l #18	ENSGT00530000063558.B #19	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
American bison	DUPLICATION
American bison	MODERN SPECIES	3189												ENSBBBG00000012509	IL7 (ENSBBBG00000012552)	ZC2HC1A (ENSBBBG00000012569)	PKIA (ENSBBBG00000001856)	ENSBBBG00000002409 #22	ENSBBBG00000001846	ENSBBBG00000012605
American bison	MODERN SPECIES	3071	SERAC1 (ENSBBBG00000011692) #9	GTF2H5 (ENSBBBG00000011523) #10	TULP4 (ENSBBBG00000011517) #11	TMEM181 (ENSBBBG00000011458) #12	DYNLT1 (ENSBBBG00000011420) #13	SYTL3 (ENSBBBG00000011406) #14	EZR (ENSBBBG00000002067) #15	RSPH3 (ENSBBBG00000011334) #16	ENSBBBG00000002057 #18	ENSBBBG00000011303 #18	FNDC1 (ENSBBBG00000002055) #19	ENSBBBG00000011265	ENSBBBG00000011260	SOD2 (ENSBBBG00000011253) #20	ENSBBBG00000011243 #21	ENSBBBG00000011209 #22	TCP1 (ENSBBBG00000002025) #23	MRPL18 (ENSBBBG00000011166) #24	PNLDC1 (ENSBBBG00000011161) #25	MAS1 (ENSBBBG00000011119) #26	IGF2R (ENSBBBG00000011115) #27	SLC22A1 (ENSBBBG00000011081) #28	SLC22A2 (ENSBBBG00000011068) #29	SLC22A3 (ENSBBBG00000011059) #30	ENSBBBG00000011051 #31	MAP3K4 (ENSBBBG00000001982) #32	ENSBBBG00000010920
Bos	ANCESTRAL SPECIES	19	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00940000157993.l #18	ENSGT00530000063558.B #19	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Bos_b	ANCESTRAL SPECIES	42	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00530000063558.B #19	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	5	CCN3 (ENSBIXG00005005725)	FABP12 (ENSBIXG00005005844)	FABP4 (ENSBIXG00005016838)	PMP2 (ENSBIXG00005002728)	FABP5 (ENSBIXG00005005727)	PAG1 (ENSBIXG00005016895)	ENSBIXG00005016921	ZBTB10 (ENSBIXG00005017084)	TPD52 (ENSBIXG00005017399)	MRPS28 (ENSBIXG00005017444)	HEY1 (ENSBIXG00005017496)	STMN2 (ENSBIXG00005017543)	IL7 (ENSBIXG00005017701)	ZC2HC1A (ENSBIXG00005017733)	PKIA (ENSBIXG00005017754)	ENSBIXG00005006362 #22	ENSBIXG00005017861	ENSBIXG00005017889	ENSBIXG00005006242	ENSBIXG00005017941	PEX2 (ENSBIXG00005017958)	ZFHX4 (ENSBIXG00005002922)	HNF4G (ENSBIXG00005018048)	ENSBIXG00005018061	CRISPLD1 (ENSBIXG00005002938)	PI15 (ENSBIXG00005018163)	GDAP1 (ENSBIXG00005018202)	JPH1 (ENSBIXG00005018221)	ENSBIXG00005002956	ENSBIXG00005002958	LY96 (ENSBIXG00005005658)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005017210	SERAC1 (ENSBIXG00005017174) #9	ENSBIXG00005016761 #10	ENSBIXG00005016735	TULP4 (ENSBIXG00005016689) #11	TMEM181 (ENSBIXG00005016376) #12	DYNLT1 (ENSBIXG00005002539) #13	SYTL3 (ENSBIXG00005015982) #14	EZR (ENSBIXG00005002517) #15	RSPH3 (ENSBIXG00005002509) #16	TAGAP (ENSBIXG00005015864) #18	FNDC1 (ENSBIXG00005002485) #19	ENSBIXG00005006566	ENSBIXG00005005505 #20	WTAP (ENSBIXG00005015616) #21	ENSBIXG00005015570 #22	ENSBIXG00005006136	TCP1 (ENSBIXG00005015526) #23	MRPL18 (ENSBIXG00005015451) #24	PNLDC1 (ENSBIXG00005015403) #25	MAS1 (ENSBIXG00005015332) #26	IGF2R (ENSBIXG00005015279) #27	SLC22A1 (ENSBIXG00005015034) #28	SLC22A2 (ENSBIXG00005006381) #29	SLC22A3 (ENSBIXG00005014926) #30	ENSBIXG00005007542 #31	MAP3K4 (ENSBIXG00005002084) #32	ENSBIXG00005006130	AGPAT4 (ENSBIXG00005014474) #33	PRKN (ENSBIXG00005007712) #34	PACRG (ENSBIXG00005013833) #35
Cow	DUPLICATION
Cow	MODERN SPECIES	5	FABP9 (ENSBTAG00000039718)	PMP2 (ENSBTAG00000000071)	FABP5 (ENSBTAG00000047330)	PAG1 (ENSBTAG00000014026)	ZNF704 (ENSBTAG00000021743)	ENSBTAG00000053020	ZBTB10 (ENSBTAG00000003339)	TPD52 (ENSBTAG00000007335)	MRPS28 (ENSBTAG00000001302)	HEY1 (ENSBTAG00000015717)	ENSBTAG00000032812	STMN2 (ENSBTAG00000020099)	IL7 (ENSBTAG00000016284)	ZC2HC1A (ENSBTAG00000018902)	PKIA (ENSBTAG00000008150)	ENSBTAG00000009539 #22	ENSBTAG00000050099	ENSBTAG00000039499	ENSBTAG00000032831	PEX2 (ENSBTAG00000003885)	ZFHX4 (ENSBTAG00000033268)	HNF4G (ENSBTAG00000008280)	CRISPLD1 (ENSBTAG00000004411)	PI15 (ENSBTAG00000019587)	GDAP1 (ENSBTAG00000012608)	JPH1 (ENSBTAG00000008842)	ENSBTAG00000032944	ENSBTAG00000048533	LY96 (ENSBTAG00000008864)	TMEM70 (ENSBTAG00000012920)	ELOC (ENSBTAG00000050514)
Cow	MODERN SPECIES	28	SERAC1 (ENSBTAG00000011509) #9	GTF2H5 (ENSBTAG00000008543) #10	TULP4 (ENSBTAG00000005083) #11	ENSBTAG00000045898	TMEM181 (ENSBTAG00000010838) #12	ENSBTAG00000004472 #13	SYTL3 (ENSBTAG00000010334) #14	EZR (ENSBTAG00000010347) #15	RSPH3 (ENSBTAG00000005955) #16	TAGAP (ENSBTAG00000031701) #18	FNDC1 (ENSBTAG00000003938) #19	ENSBTAG00000048338	ENSBTAG00000052316	SOD2 (ENSBTAG00000006523) #20	WTAP (ENSBTAG00000007974) #21	ACAT2 (ENSBTAG00000002827) #22	TCP1 (ENSBTAG00000002829) #23	MRPL18 (ENSBTAG00000001289) #24	PNLDC1 (ENSBTAG00000015166) #25	MAS1 (ENSBTAG00000031724) #26	IGF2R (ENSBTAG00000002402) #27	SLC22A1 (ENSBTAG00000008540) #28	SLC22A2 (ENSBTAG00000009583) #29	SLC22A3 (ENSBTAG00000039080) #30	PLG (ENSBTAG00000001271) #31	MAP3K4 (ENSBTAG00000020079) #32	ENSBTAG00000052236	AGPAT4 (ENSBTAG00000007668) #33	PRKN (ENSBTAG00000018996) #34	PACRG (ENSBTAG00000011106) #35	QKI (ENSBTAG00000011593) #36
Bos_a	ANCESTRAL SPECIES	54	ENSGT00940000160715 #8	ENSGT00390000003560 #9	ENSGT00390000004028 #10	ENSGT00940000155913 #11	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #18	ENSGT00940000157993.l #18	ENSGT00530000063558.B #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #28	ENSGT00940000155089 #29	ENSGT00940000160810 #30	ENSGT00940000155208 #31	ENSGT00880000138034 #32	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #34	ENSGT00940000157330 #35	ENSGT00940000155310.b #36
Wild yak	MODERN SPECIES	1168	SERAC1 (ENSBMUG00000001963) #9	GTF2H5 (ENSBMUG00000002023) #10	ENSBMUG00000002042 #11	TMEM181 (ENSBMUG00000002081) #12	ENSBMUG00000002110 #13	SYTL3 (ENSBMUG00000002194) #14	EZR (ENSBMUG00000002231) #15	RSPH3 (ENSBMUG00000002272) #16	ENSBMUG00000002298 #18	ENSBMUG00000002323 #18	FNDC1 (ENSBMUG00000002609) #19	ENSBMUG00000002677	ENSBMUG00000002680	SOD2 (ENSBMUG00000002696) #20	ENSBMUG00000002743 #21	ACAT2 (ENSBMUG00000002762) #22	TCP1 (ENSBMUG00000002835) #23	MRPL18 (ENSBMUG00000002874) #24	PNLDC1 (ENSBMUG00000002939) #25	MAS1 (ENSBMUG00000002956) #26	IGF2R (ENSBMUG00000003027) #27	SLC22A1 (ENSBMUG00000003078) #28	SLC22A2 (ENSBMUG00000003107) #29	SLC22A3 (ENSBMUG00000003131) #30	ENSBMUG00000003160 #31	MAP3K4 (ENSBMUG00000003212) #32	ENSBMUG00000003268	ENSBMUG00000003343 #33
Domestic yak	DUPLICATION
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	9	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)	LY96 (ENSBGRG00000015389)
Domestic yak	MODERN SPECIES	9	FABP5 (ENSBGRG00000019123)	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)
Domestic yak	MODERN SPECIES	1	SNX9 (ENSBGRG00000026688) #7	SYNJ2 (ENSBGRG00000026679) #8	SERAC1 (ENSBGRG00000026663) #9	ENSBGRG00000026645 #10	TULP4 (ENSBGRG00000026640) #11	TMEM181 (ENSBGRG00000026630) #12	DYNLT1 (ENSBGRG00000026623) #13	SYTL3 (ENSBGRG00000026617) #14	EZR (ENSBGRG00000026603) #15	RSPH3 (ENSBGRG00000026600) #16	TAGAP (ENSBGRG00000026597) #18	FNDC1 (ENSBGRG00000026585) #19	ENSBGRG00000026571 #20	ENSBGRG00000026563 ##21	ENSBGRG00000026557 #21	ENSBGRG00000026550 #22	TCP1 (ENSBGRG00000026527) #23	MRPL18 (ENSBGRG00000026525) #24	PNLDC1 (ENSBGRG00000026494) #25	MAS1 (ENSBGRG00000026489) #26	ENSBGRG00000026486	IGF2R (ENSBGRG00000021970) #27	SLC22A1 (ENSBGRG00000021387) #28	SLC22A2 (ENSBGRG00000021163) #29	SLC22A3 (ENSBGRG00000020975) #30	ENSBGRG00000020646 #31	ENSBGRG00000020575	MAP3K4 (ENSBGRG00000017036) #32	AGPAT4 (ENSBGRG00000016794) #33	ENSBGRG00000016774	PRKN (ENSBGRG00000015642) #34
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	179	ENSMMSG00000007955	CCN3 (ENSMMSG00000007984)	FABP12 (ENSMMSG00000008001)	FABP4 (ENSMMSG00000008031)	FABP9 (ENSMMSG00000008067)	ENSMMSG00000008129	PAG1 (ENSMMSG00000008150)	ZNF704 (ENSMMSG00000008169)	ZBTB10 (ENSMMSG00000008194)	TPD52 (ENSMMSG00000008296)	MRPS28 (ENSMMSG00000009043)	HEY1 (ENSMMSG00000009080)	STMN2 (ENSMMSG00000009102)	IL7 (ENSMMSG00000009163)	PKIA (ENSMMSG00000009271)	ENSMMSG00000009310 #22	ENSMMSG00000009363	PEX2 (ENSMMSG00000009421)	ZFHX4 (ENSMMSG00000009465)	ENSMMSG00000009642	HNF4G (ENSMMSG00000009664)	ENSMMSG00000009721	ENSMMSG00000009729	CRISPLD1 (ENSMMSG00000009747)	PI15 (ENSMMSG00000009843)	GDAP1 (ENSMMSG00000009866)	JPH1 (ENSMMSG00000009896)	ENSMMSG00000009924	ENSMMSG00000009942	LY96 (ENSMMSG00000009965)	TMEM70 (ENSMMSG00000010023)
Siberian musk deer	MODERN SPECIES	61	SNX9 (ENSMMSG00000001061) #7	SYNJ2 (ENSMMSG00000001120) #8	SERAC1 (ENSMMSG00000001280) #9	GTF2H5 (ENSMMSG00000001513) #10	TULP4 (ENSMMSG00000001543) #11	TMEM181 (ENSMMSG00000001689) #12	ENSMMSG00000001893 #13	SYTL3 (ENSMMSG00000001907) #14	EZR (ENSMMSG00000001963) #15	RSPH3 (ENSMMSG00000002005) #16	TAGAP (ENSMMSG00000002040) #18	ENSMMSG00000002090	FNDC1 (ENSMMSG00000002110) #19	ENSMMSG00000002137 #20	WTAP (ENSMMSG00000002177) #21	ENSMMSG00000002220 #22	TCP1 (ENSMMSG00000002241) #23	MRPL18 (ENSMMSG00000002291) #24	PNLDC1 (ENSMMSG00000002313) #25	MAS1 (ENSMMSG00000002388) #26	IGF2R (ENSMMSG00000002420) #27	SLC22A1 (ENSMMSG00000002522) #28	SLC22A2 (ENSMMSG00000002601) #29	SLC22A3 (ENSMMSG00000002642) #30	ENSMMSG00000002676 #31	ENSMMSG00000002739	MAP3K4 (ENSMMSG00000002913) #32	AGPAT4 (ENSMMSG00000003318) #33	PRKN (ENSMMSG00000003365) #34	ENSMMSG00000003500	PACRG (ENSMMSG00000003517) #35