Gnathostomata	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Euteleostomi	ANCESTRAL SPECIES	289				ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23
Sarcopterygii	ANCESTRAL SPECIES	414									ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23
Tetrapoda	ANCESTRAL SPECIES	79	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000013943 #27	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877	ENSGT00940000156543	ENSGT00420000030417	ENSGT00940000157912
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089 #30	ENSGT00940000162065 #29	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089 #30	ENSGT00940000162065 #29	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Theria	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00950000186343 #37
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT01010000229882 #11	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017281.j #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330	ENSGT00940000155310.b
Blue whale	MODERN SPECIES	3	SYNJ2 (ENSBMSG00010011701) #7	SERAC1 (ENSBMSG00010011654) #8	GTF2H5 (ENSBMSG00010011624) #9	TULP4 (ENSBMSG00010011601) #10	ENSBMSG00010011592 #11	TMEM181 (ENSBMSG00010011555) #12	ENSBMSG00010011520 #13	SYTL3 (ENSBMSG00010011475) #14	EZR (ENSBMSG00010011421) #15	RSPH3 (ENSBMSG00010011388) #16	TAGAP (ENSBMSG00010011351) #17	FNDC1 (ENSBMSG00010011227) #18	ENSBMSG00010011186 #19	ENSBMSG00010011159 #20	ENSBMSG00010011125 #21	ACAT2 (ENSBMSG00010011102) #22	TCP1 (ENSBMSG00010011064) #23	MRPL18 (ENSBMSG00010011042) #24	PNLDC1 (ENSBMSG00010010984) #25	MAS1 (ENSBMSG00010010947) #26	IGF2R (ENSBMSG00010010889) #27	ENSBMSG00010010858 #28	SLC22A1 (ENSBMSG00010010839) #29	SLC22A2 (ENSBMSG00010010814) #30	SLC22A3 (ENSBMSG00010010779) #31	ENSBMSG00010010741 #32	MAP3K4 (ENSBMSG00010010709) #33	AGPAT4 (ENSBMSG00010010688) #34	ENSBMSG00010010664 #35	PRKN (ENSBMSG00010010461) #36	ENSBMSG00010010418 #37
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT01010000229882 #11	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017281.j #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT01010000229882 #11	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017281.j #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT01010000229882 #11	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017281.j #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00390000018085.a.b.b ##28	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00940000154508.a.a.h #35	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343 #37
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT01010000229882 #11	ENSGT00390000007183 #12	ENSGT00940000154531.k.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017281.j #19	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00390000018085.a.b.b ##28	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00940000154508.a.a.h #35	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343 #37
Beluga whale	MODERN SPECIES	80	SNX9 (ENSDLEG00000012695)	SYNJ2 (ENSDLEG00000012744) #7	SERAC1 (ENSDLEG00000012822) #8	GTF2H5 (ENSDLEG00000012851) #9	TULP4 (ENSDLEG00000012862) #10	TMEM181 (ENSDLEG00000012897) #12	DYNLT1 (ENSDLEG00000012925) #13	SYTL3 (ENSDLEG00000012934) #14	EZR (ENSDLEG00000012951) #15	RSPH3 (ENSDLEG00000013000) #16	TAGAP (ENSDLEG00000013116) #17	ENSDLEG00000013131 #18	ENSDLEG00000013163 #19	SOD2 (ENSDLEG00000013188) #20	WTAP (ENSDLEG00000013205) #21	ACAT2 (ENSDLEG00000013224) #22	TCP1 (ENSDLEG00000013249) #23	MRPL18 (ENSDLEG00000013282) #24	PNLDC1 (ENSDLEG00000013298) #25	MAS1 (ENSDLEG00000013351) #26	IGF2R (ENSDLEG00000013373) #27	SLC22A1 (ENSDLEG00000013591) #29	SLC22A2 (ENSDLEG00000013647) #30	SLC22A3 (ENSDLEG00000013670) #31	PLG (ENSDLEG00000013736) #32	MAP3K4 (ENSDLEG00000013778) #33	AGPAT4 (ENSDLEG00000013962) #34	ENSDLEG00000014031 #35	ENSDLEG00000014046	ENSDLEG00000014063 #37	ENSDLEG00000014077
Narwhal	MODERN SPECIES	301	SYNJ2 (ENSMMNG00015010674) #7	SERAC1 (ENSMMNG00015010803) #8	GTF2H5 (ENSMMNG00015010910) #9	TULP4 (ENSMMNG00015010941) #10	ENSMMNG00015010987 #11	TMEM181 (ENSMMNG00015011008) #12	ENSMMNG00015011048 #13	SYTL3 (ENSMMNG00015011069) #14	EZR (ENSMMNG00015011090) #15	RSPH3 (ENSMMNG00015011129) #16	TAGAP (ENSMMNG00015011155) #17	FNDC1 (ENSMMNG00015011181) #18	ENSMMNG00015011212 #19	SOD2 (ENSMMNG00015011230) #20	WTAP (ENSMMNG00015011260) #21	ACAT2 (ENSMMNG00015011293) #22	TCP1 (ENSMMNG00015011321) #23	MRPL18 (ENSMMNG00015011349) #24	PNLDC1 (ENSMMNG00015011367) #25	MAS1 (ENSMMNG00015011391) #26	IGF2R (ENSMMNG00015011406) #27	SLC22A1 (ENSMMNG00015011429) #29	ENSMMNG00015011446 ##28	SLC22A2 (ENSMMNG00015011459) #30	SLC22A3 (ENSMMNG00015011477) #31	ENSMMNG00015011493 #32	MAP3K4 (ENSMMNG00015011572) #33	AGPAT4 (ENSMMNG00015011728) #34	ENSMMNG00015011816 #35	PACRG (ENSMMNG00015011827)	QKI (ENSMMNG00015011839)
Vaquita	MODERN SPECIES	3	ENSPSNG00000020609	SYNJ2 (ENSPSNG00000020311) #7	SERAC1 (ENSPSNG00000020095) #8	GTF2H5 (ENSPSNG00000020011) #9	TULP4 (ENSPSNG00000019944) #10	TMEM181 (ENSPSNG00000019785) #12	ENSPSNG00000019724 #13	SYTL3 (ENSPSNG00000019533) #14	EZR (ENSPSNG00000019386) #15	RSPH3 (ENSPSNG00000019104) #16	TAGAP (ENSPSNG00000018854) #17	FNDC1 (ENSPSNG00000018682) #18	ENSPSNG00000018560 #19	SOD2 (ENSPSNG00000018468) #20	WTAP (ENSPSNG00000018363) #21	ACAT2 (ENSPSNG00000018304) #22	TCP1 (ENSPSNG00000018222) #23	MRPL18 (ENSPSNG00000018155) #24	PNLDC1 (ENSPSNG00000017839) #25	MAS1 (ENSPSNG00000017797) #26	IGF2R (ENSPSNG00000017592) #27	ENSPSNG00000017517 #29	ENSPSNG00000017468 ##28	SLC22A2 (ENSPSNG00000017306) #30	SLC22A3 (ENSPSNG00000017154) #31	ENSPSNG00000016905 #32	MAP3K4 (ENSPSNG00000016678) #33	AGPAT4 (ENSPSNG00000016495) #34	ENSPSNG00000016413 #35	ENSPSNG00000016356	PRKN (ENSPSNG00000015749) #36
Dolphin	MODERN SPECIES	3445														ENSTTRG00000010355 #20	WTAP (ENSTTRG00000010379) #21	ACAT2 (ENSTTRG00000010389) #22	TCP1 (ENSTTRG00000010393) #23	MRPL18 (ENSTTRG00000010404) #24	PNLDC1 (ENSTTRG00000010409) #25
Sperm whale	MODERN SPECIES	421																ACAT2 (ENSPCTG00005022140) #22	ENSPCTG00005022124 #23	MRPL18 (ENSPCTG00005022113) #24	PNLDC1 (ENSPCTG00005022102) #25
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Yarkand deer	MODERN SPECIES	18	GTF2H5 (ENSCHYG00000017957) #9	TULP4 (ENSCHYG00000018070) #10	ENSCHYG00000018795	ENSCHYG00000018828	TMEM181 (ENSCHYG00000018947) #12	ENSCHYG00000020249	ENSCHYG00000020272 #13	SYTL3 (ENSCHYG00000020333) #14	ENSCHYG00000020511 #15	RSPH3 (ENSCHYG00000020694) #16	TAGAP (ENSCHYG00000020890) #17	ENSCHYG00000021069	FNDC1 (ENSCHYG00000021187) #18	ENSCHYG00000022090 #20	WTAP (ENSCHYG00000022403) #21	ACAT2 (ENSCHYG00000022487) #22	TCP1 (ENSCHYG00000022554) #23	MRPL18 (ENSCHYG00000022773) #24	PNLDC1 (ENSCHYG00000022800) #25	MAS1 (ENSCHYG00000022925) #26	IGF2R (ENSCHYG00000023202) #27	SLC22A1 (ENSCHYG00000025285) #29	SLC22A2 (ENSCHYG00000025351) #30	SLC22A3 (ENSCHYG00000025420) #31	ENSCHYG00000025465 #32	MAP3K4 (ENSCHYG00000025579) #33	AGPAT4 (ENSCHYG00000025772) #34	PRKN (ENSCHYG00000025824) #36	PACRG (ENSCHYG00000025979)	QKI (ENSCHYG00000026014)	C6orf118 (ENSCHYG00000026045)
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00940000157993.l #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.l #17	ENSGT00530000063558.B #18	ENSGT00390000013558.z	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.d #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Goat	DUPLICATION
Goat	MODERN SPECIES	5	FABP9 (ENSCHIG00000013859)	PMP2 (ENSCHIG00000017466)	ENSCHIG00000022058	PAG1 (ENSCHIG00000005882)	ZNF704 (ENSCHIG00000009329)	ZBTB10 (ENSCHIG00000008950)	TPD52 (ENSCHIG00000016090)	MRPS28 (ENSCHIG00000018727)	HEY1 (ENSCHIG00000021515)	STMN2 (ENSCHIG00000014257)	ENSCHIG00000022803	IL7 (ENSCHIG00000013214)	ZC2HC1A (ENSCHIG00000022396)	PKIA (ENSCHIG00000022780)	ENSCHIG00000026486	ENSCHIG00000017797 #22	ENSCHIG00000012572	ENSCHIG00000024972	PEX2 (ENSCHIG00000011681)	ZFHX4 (ENSCHIG00000017123)	ENSCHIG00000020169	HNF4G (ENSCHIG00000001150)	CRISPLD1 (ENSCHIG00000016652)	PI15 (ENSCHIG00000016089)	GDAP1 (ENSCHIG00000006756)	JPH1 (ENSCHIG00000017967)	ENSCHIG00000017122	LY96 (ENSCHIG00000012530)	TMEM70 (ENSCHIG00000019890)	ELOC (ENSCHIG00000015198)	UBE2W (ENSCHIG00000025248)
Goat	MODERN SPECIES	28	SYNJ2 (ENSCHIG00000011077) #7	SERAC1 (ENSCHIG00000013202) #8	GTF2H5 (ENSCHIG00000000966) #9	TULP4 (ENSCHIG00000003373) #10	TMEM181 (ENSCHIG00000023369) #12	DYNLT1 (ENSCHIG00000026680) #13	SYTL3 (ENSCHIG00000016283) #14	EZR (ENSCHIG00000017900) #15	RSPH3 (ENSCHIG00000018819) #16	TAGAP (ENSCHIG00000008817) #17	FNDC1 (ENSCHIG00000023614) #18	ENSCHIG00000020625	ENSCHIG00000010882	SOD2 (ENSCHIG00000009947) #20	ENSCHIG00000026430 #21	ENSCHIG00000017426 #22	TCP1 (ENSCHIG00000016503) #23	ENSCHIG00000023286 #24	PNLDC1 (ENSCHIG00000003141) #25	MAS1 (ENSCHIG00000012964) #26	IGF2R (ENSCHIG00000010830) #27	SLC22A1 (ENSCHIG00000014819) #29	SLC22A2 (ENSCHIG00000006824) #30	SLC22A3 (ENSCHIG00000021136) #31	ENSCHIG00000011198 #32	MAP3K4 (ENSCHIG00000009330) #33	ENSCHIG00000024395	AGPAT4 (ENSCHIG00000016729) #34	ENSCHIG00000020982 #36	ENSCHIG00000025260 #36	ENSCHIG00000016416 #36
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	25	FABP4 (ENSOARG00020017607)	FABP9 (ENSOARG00020017569)	PMP2 (ENSOARG00020017455)	ENSOARG00020017413	PAG1 (ENSOARG00020017273)	ZNF704 (ENSOARG00020017158)	ENSOARG00020017111	ZBTB10 (ENSOARG00020016760)	MRPS28 (ENSOARG00020016516)	HEY1 (ENSOARG00020016436)	STMN2 (ENSOARG00020016309)	ENSOARG00020016227	IL7 (ENSOARG00020016028)	ZC2HC1A (ENSOARG00020015884)	ENSOARG00020015830	ENSOARG00020015780 #22	ENSOARG00020015710	PEX2 (ENSOARG00020015627)	ENSOARG00020015601	ZFHX4 (ENSOARG00020015358)	HNF4G (ENSOARG00020015145)	CRISPLD1 (ENSOARG00020014832)	PI15 (ENSOARG00020014740)	GDAP1 (ENSOARG00020014639)	JPH1 (ENSOARG00020014507)	ENSOARG00020014381	ENSOARG00020014341	ENSOARG00020014317	LY96 (ENSOARG00020014177)	TMEM70 (ENSOARG00020014121)	ENSOARG00020014058
Rambouillet Sheep	MODERN SPECIES	24	RPS25 (ENSOARG00020004228)	SYNJ2 (ENSOARG00020004254) #7	SERAC1 (ENSOARG00020004385) #8	GTF2H5 (ENSOARG00020004781) #9	TULP4 (ENSOARG00020004840) #10	TMEM181 (ENSOARG00020005095) #12	DYNLT1 (ENSOARG00020005652) #13	SYTL3 (ENSOARG00020005678) #14	ENSOARG00020005804 #15	RSPH3 (ENSOARG00020005842) #16	TAGAP (ENSOARG00020005923) #17	ENSOARG00020005992	ENSOARG00020006017	SOD2 (ENSOARG00020006059) #20	WTAP (ENSOARG00020006133) #21	ENSOARG00020006176 #22	TCP1 (ENSOARG00020006218) #23	MRPL18 (ENSOARG00020006305) #24	PNLDC1 (ENSOARG00020006365) #25	MAS1 (ENSOARG00020006641) #26	IGF2R (ENSOARG00020007810) #27	SLC22A1 (ENSOARG00020025899) #29	SLC22A2 (ENSOARG00020025906) #30	SLC22A3 (ENSOARG00020025917) #31	ENSOARG00020025929 #32	MAP3K4 (ENSOARG00020025996) #33	AGPAT4 (ENSOARG00020026075) #34	PRKN (ENSOARG00020026093) #36	PACRG (ENSOARG00020026098)	ENSOARG00020026099	QKI (ENSOARG00020026100)
Bovinae	ANCESTRAL SPECIES	35	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00940000157993.l #17	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
American bison	DUPLICATION
American bison	MODERN SPECIES	3189												ENSBBBG00000012509	IL7 (ENSBBBG00000012552)	ZC2HC1A (ENSBBBG00000012569)	PKIA (ENSBBBG00000001856)	ENSBBBG00000002409 #22	ENSBBBG00000001846	ENSBBBG00000012605
American bison	MODERN SPECIES	3071	SERAC1 (ENSBBBG00000011692) #8	GTF2H5 (ENSBBBG00000011523) #9	TULP4 (ENSBBBG00000011517) #10	TMEM181 (ENSBBBG00000011458) #12	DYNLT1 (ENSBBBG00000011420) #13	SYTL3 (ENSBBBG00000011406) #14	EZR (ENSBBBG00000002067) #15	RSPH3 (ENSBBBG00000011334) #16	ENSBBBG00000002057 #17	ENSBBBG00000011303 #17	FNDC1 (ENSBBBG00000002055) #18	ENSBBBG00000011265	ENSBBBG00000011260	SOD2 (ENSBBBG00000011253) #20	ENSBBBG00000011243 #21	ENSBBBG00000011209 #22	TCP1 (ENSBBBG00000002025) #23	MRPL18 (ENSBBBG00000011166) #24	PNLDC1 (ENSBBBG00000011161) #25	MAS1 (ENSBBBG00000011119) #26	IGF2R (ENSBBBG00000011115) #27	SLC22A1 (ENSBBBG00000011081) #29	SLC22A2 (ENSBBBG00000011068) #30	SLC22A3 (ENSBBBG00000011059) #31	ENSBBBG00000011051 #32	MAP3K4 (ENSBBBG00000001982) #33	ENSBBBG00000010920
Bos	ANCESTRAL SPECIES	19	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00940000157993.l #17	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Bos_b	ANCESTRAL SPECIES	42	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	5	CCN3 (ENSBIXG00005005725)	FABP12 (ENSBIXG00005005844)	FABP4 (ENSBIXG00005016838)	PMP2 (ENSBIXG00005002728)	FABP5 (ENSBIXG00005005727)	PAG1 (ENSBIXG00005016895)	ENSBIXG00005016921	ZBTB10 (ENSBIXG00005017084)	TPD52 (ENSBIXG00005017399)	MRPS28 (ENSBIXG00005017444)	HEY1 (ENSBIXG00005017496)	STMN2 (ENSBIXG00005017543)	IL7 (ENSBIXG00005017701)	ZC2HC1A (ENSBIXG00005017733)	PKIA (ENSBIXG00005017754)	ENSBIXG00005006362 #22	ENSBIXG00005017861	ENSBIXG00005017889	ENSBIXG00005006242	ENSBIXG00005017941	PEX2 (ENSBIXG00005017958)	ZFHX4 (ENSBIXG00005002922)	HNF4G (ENSBIXG00005018048)	ENSBIXG00005018061	CRISPLD1 (ENSBIXG00005002938)	PI15 (ENSBIXG00005018163)	GDAP1 (ENSBIXG00005018202)	JPH1 (ENSBIXG00005018221)	ENSBIXG00005002956	ENSBIXG00005002958	LY96 (ENSBIXG00005005658)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005017210	SERAC1 (ENSBIXG00005017174) #8	ENSBIXG00005016761 #9	ENSBIXG00005016735	TULP4 (ENSBIXG00005016689) #10	TMEM181 (ENSBIXG00005016376) #12	DYNLT1 (ENSBIXG00005002539) #13	SYTL3 (ENSBIXG00005015982) #14	EZR (ENSBIXG00005002517) #15	RSPH3 (ENSBIXG00005002509) #16	TAGAP (ENSBIXG00005015864) #17	FNDC1 (ENSBIXG00005002485) #18	ENSBIXG00005006566	ENSBIXG00005005505 #20	WTAP (ENSBIXG00005015616) #21	ENSBIXG00005015570 #22	ENSBIXG00005006136	TCP1 (ENSBIXG00005015526) #23	MRPL18 (ENSBIXG00005015451) #24	PNLDC1 (ENSBIXG00005015403) #25	MAS1 (ENSBIXG00005015332) #26	IGF2R (ENSBIXG00005015279) #27	SLC22A1 (ENSBIXG00005015034) #29	SLC22A2 (ENSBIXG00005006381) #30	SLC22A3 (ENSBIXG00005014926) #31	ENSBIXG00005007542 #32	MAP3K4 (ENSBIXG00005002084) #33	ENSBIXG00005006130	AGPAT4 (ENSBIXG00005014474) #34	PRKN (ENSBIXG00005007712) #36	PACRG (ENSBIXG00005013833)
Cow	DUPLICATION
Cow	MODERN SPECIES	5	FABP9 (ENSBTAG00000039718)	PMP2 (ENSBTAG00000000071)	FABP5 (ENSBTAG00000047330)	PAG1 (ENSBTAG00000014026)	ZNF704 (ENSBTAG00000021743)	ENSBTAG00000053020	ZBTB10 (ENSBTAG00000003339)	TPD52 (ENSBTAG00000007335)	MRPS28 (ENSBTAG00000001302)	HEY1 (ENSBTAG00000015717)	ENSBTAG00000032812	STMN2 (ENSBTAG00000020099)	IL7 (ENSBTAG00000016284)	ZC2HC1A (ENSBTAG00000018902)	PKIA (ENSBTAG00000008150)	ENSBTAG00000009539 #22	ENSBTAG00000050099	ENSBTAG00000039499	ENSBTAG00000032831	PEX2 (ENSBTAG00000003885)	ZFHX4 (ENSBTAG00000033268)	HNF4G (ENSBTAG00000008280)	CRISPLD1 (ENSBTAG00000004411)	PI15 (ENSBTAG00000019587)	GDAP1 (ENSBTAG00000012608)	JPH1 (ENSBTAG00000008842)	ENSBTAG00000032944	ENSBTAG00000048533	LY96 (ENSBTAG00000008864)	TMEM70 (ENSBTAG00000012920)	ELOC (ENSBTAG00000050514)
Cow	MODERN SPECIES	28	SERAC1 (ENSBTAG00000011509) #8	GTF2H5 (ENSBTAG00000008543) #9	TULP4 (ENSBTAG00000005083) #10	ENSBTAG00000045898	TMEM181 (ENSBTAG00000010838) #12	ENSBTAG00000004472 #13	SYTL3 (ENSBTAG00000010334) #14	EZR (ENSBTAG00000010347) #15	RSPH3 (ENSBTAG00000005955) #16	TAGAP (ENSBTAG00000031701) #17	FNDC1 (ENSBTAG00000003938) #18	ENSBTAG00000048338	ENSBTAG00000052316	SOD2 (ENSBTAG00000006523) #20	WTAP (ENSBTAG00000007974) #21	ACAT2 (ENSBTAG00000002827) #22	TCP1 (ENSBTAG00000002829) #23	MRPL18 (ENSBTAG00000001289) #24	PNLDC1 (ENSBTAG00000015166) #25	MAS1 (ENSBTAG00000031724) #26	IGF2R (ENSBTAG00000002402) #27	SLC22A1 (ENSBTAG00000008540) #29	SLC22A2 (ENSBTAG00000009583) #30	SLC22A3 (ENSBTAG00000039080) #31	PLG (ENSBTAG00000001271) #32	MAP3K4 (ENSBTAG00000020079) #33	ENSBTAG00000052236	AGPAT4 (ENSBTAG00000007668) #34	PRKN (ENSBTAG00000018996) #36	PACRG (ENSBTAG00000011106)	QKI (ENSBTAG00000011593)
Bos_a	ANCESTRAL SPECIES	54	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.j #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.k #17	ENSGT00940000157993.l #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Wild yak	MODERN SPECIES	1168	SERAC1 (ENSBMUG00000001963) #8	GTF2H5 (ENSBMUG00000002023) #9	ENSBMUG00000002042 #10	TMEM181 (ENSBMUG00000002081) #12	ENSBMUG00000002110 #13	SYTL3 (ENSBMUG00000002194) #14	EZR (ENSBMUG00000002231) #15	RSPH3 (ENSBMUG00000002272) #16	ENSBMUG00000002298 #17	ENSBMUG00000002323 #17	FNDC1 (ENSBMUG00000002609) #18	ENSBMUG00000002677	ENSBMUG00000002680	SOD2 (ENSBMUG00000002696) #20	ENSBMUG00000002743 #21	ACAT2 (ENSBMUG00000002762) #22	TCP1 (ENSBMUG00000002835) #23	MRPL18 (ENSBMUG00000002874) #24	PNLDC1 (ENSBMUG00000002939) #25	MAS1 (ENSBMUG00000002956) #26	IGF2R (ENSBMUG00000003027) #27	SLC22A1 (ENSBMUG00000003078) #29	SLC22A2 (ENSBMUG00000003107) #30	SLC22A3 (ENSBMUG00000003131) #31	ENSBMUG00000003160 #32	MAP3K4 (ENSBMUG00000003212) #33	ENSBMUG00000003268	ENSBMUG00000003343 #34
Domestic yak	DUPLICATION
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	9	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)	LY96 (ENSBGRG00000015389)
Domestic yak	MODERN SPECIES	9	FABP5 (ENSBGRG00000019123)	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)
Domestic yak	MODERN SPECIES	1	SNX9 (ENSBGRG00000026688)	SYNJ2 (ENSBGRG00000026679) #7	SERAC1 (ENSBGRG00000026663) #8	ENSBGRG00000026645 #9	TULP4 (ENSBGRG00000026640) #10	TMEM181 (ENSBGRG00000026630) #12	DYNLT1 (ENSBGRG00000026623) #13	SYTL3 (ENSBGRG00000026617) #14	EZR (ENSBGRG00000026603) #15	RSPH3 (ENSBGRG00000026600) #16	TAGAP (ENSBGRG00000026597) #17	FNDC1 (ENSBGRG00000026585) #18	ENSBGRG00000026571 #20	ENSBGRG00000026563 ##21	ENSBGRG00000026557 #21	ENSBGRG00000026550 #22	TCP1 (ENSBGRG00000026527) #23	MRPL18 (ENSBGRG00000026525) #24	PNLDC1 (ENSBGRG00000026494) #25	MAS1 (ENSBGRG00000026489) #26	ENSBGRG00000026486	IGF2R (ENSBGRG00000021970) #27	SLC22A1 (ENSBGRG00000021387) #29	SLC22A2 (ENSBGRG00000021163) #30	SLC22A3 (ENSBGRG00000020975) #31	ENSBGRG00000020646 #32	ENSBGRG00000020575	MAP3K4 (ENSBGRG00000017036) #33	AGPAT4 (ENSBGRG00000016794) #34	ENSBGRG00000016774	PRKN (ENSBGRG00000015642) #36
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	179	ENSMMSG00000007955	CCN3 (ENSMMSG00000007984)	FABP12 (ENSMMSG00000008001)	FABP4 (ENSMMSG00000008031)	FABP9 (ENSMMSG00000008067)	ENSMMSG00000008129	PAG1 (ENSMMSG00000008150)	ZNF704 (ENSMMSG00000008169)	ZBTB10 (ENSMMSG00000008194)	TPD52 (ENSMMSG00000008296)	MRPS28 (ENSMMSG00000009043)	HEY1 (ENSMMSG00000009080)	STMN2 (ENSMMSG00000009102)	IL7 (ENSMMSG00000009163)	PKIA (ENSMMSG00000009271)	ENSMMSG00000009310 #22	ENSMMSG00000009363	PEX2 (ENSMMSG00000009421)	ZFHX4 (ENSMMSG00000009465)	ENSMMSG00000009642	HNF4G (ENSMMSG00000009664)	ENSMMSG00000009721	ENSMMSG00000009729	CRISPLD1 (ENSMMSG00000009747)	PI15 (ENSMMSG00000009843)	GDAP1 (ENSMMSG00000009866)	JPH1 (ENSMMSG00000009896)	ENSMMSG00000009924	ENSMMSG00000009942	LY96 (ENSMMSG00000009965)	TMEM70 (ENSMMSG00000010023)
Siberian musk deer	MODERN SPECIES	61	SNX9 (ENSMMSG00000001061)	SYNJ2 (ENSMMSG00000001120) #7	SERAC1 (ENSMMSG00000001280) #8	GTF2H5 (ENSMMSG00000001513) #9	TULP4 (ENSMMSG00000001543) #10	TMEM181 (ENSMMSG00000001689) #12	ENSMMSG00000001893 #13	SYTL3 (ENSMMSG00000001907) #14	EZR (ENSMMSG00000001963) #15	RSPH3 (ENSMMSG00000002005) #16	TAGAP (ENSMMSG00000002040) #17	ENSMMSG00000002090	FNDC1 (ENSMMSG00000002110) #18	ENSMMSG00000002137 #20	WTAP (ENSMMSG00000002177) #21	ENSMMSG00000002220 #22	TCP1 (ENSMMSG00000002241) #23	MRPL18 (ENSMMSG00000002291) #24	PNLDC1 (ENSMMSG00000002313) #25	MAS1 (ENSMMSG00000002388) #26	IGF2R (ENSMMSG00000002420) #27	SLC22A1 (ENSMMSG00000002522) #29	SLC22A2 (ENSMMSG00000002601) #30	SLC22A3 (ENSMMSG00000002642) #31	ENSMMSG00000002676 #32	ENSMMSG00000002739	MAP3K4 (ENSMMSG00000002913) #33	AGPAT4 (ENSMMSG00000003318) #34	PRKN (ENSMMSG00000003365) #36	ENSMMSG00000003500	PACRG (ENSMMSG00000003517)
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Arabian camel	MODERN SPECIES	34	ZDHHC14 (ENSCDRG00005018018)	SNX9 (ENSCDRG00005017884)	SYNJ2 (ENSCDRG00005016839) #7	SERAC1 (ENSCDRG00005016470) #8	GTF2H5 (ENSCDRG00005016408) #9	ENSCDRG00005016299 #10	TMEM181 (ENSCDRG00005015875) #12	ENSCDRG00005015822 #13	SYTL3 (ENSCDRG00005015709) #14	ENSCDRG00005015561 #15	RSPH3 (ENSCDRG00005015431) #16	TAGAP (ENSCDRG00005015381) #17	FNDC1 (ENSCDRG00005015292) #18	MnSOD (ENSCDRG00005015180) #20	WTAP (ENSCDRG00005015081) #21	ACAT2 (ENSCDRG00005015012) #22	TCP1 (ENSCDRG00005014875) #23	MRPL18 (ENSCDRG00005014810) #24	PNLDC1 (ENSCDRG00005014558) #25	MAS1 (ENSCDRG00005014532) #26	IGF2R (ENSCDRG00005014304) #27	SLC22A1 (ENSCDRG00005014227) #29	SLC22A2 (ENSCDRG00005014141) #30	SLC22A3 (ENSCDRG00005014054) #31	ENSCDRG00005013803 #32	MAP3K4 (ENSCDRG00005011806) #33	AGPAT4 (ENSCDRG00005011648) #34	PRKN (ENSCDRG00005010399) #36	PACRG (ENSCDRG00005010327)	QKI (ENSCDRG00005010246)	C6orf118 (ENSCDRG00005010197)
Alpaca	MODERN SPECIES	3586														SOD2 (ENSVPAG00000008201) #20	WTAP (ENSVPAG00000008205) #21	ACAT2 (ENSVPAG00000008207) #22	TCP1 (ENSVPAG00000008209) #23	MRPL18 (ENSVPAG00000008211) #24	ENSVPAG00000008213
Suina	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00940000156543
Chacoan peccary	MODERN SPECIES	58	ZDHHC14 (ENSCWAG00000003840)	SNX9 (ENSCWAG00000003804)	SYNJ2 (ENSCWAG00000003712) #7	SERAC1 (ENSCWAG00000003601) #8	GTF2H5 (ENSCWAG00000003578) #9	TULP4 (ENSCWAG00000003534) #10	TMEM181 (ENSCWAG00000003377) #12	DYNLT1 (ENSCWAG00000003343) #13	SYTL3 (ENSCWAG00000003293) #14	EZR (ENSCWAG00000003256) #15	RSPH3 (ENSCWAG00000003227) #16	ENSCWAG00000003211 #17	FNDC1 (ENSCWAG00000003188) #18	SOD2 (ENSCWAG00000003162) #20	WTAP (ENSCWAG00000003142) #21	ACAT2 (ENSCWAG00000003116) #22	TCP1 (ENSCWAG00000003074) #23	MRPL18 (ENSCWAG00000003059) #24	PNLDC1 (ENSCWAG00000003002) #25	ENSCWAG00000002985	MAS1 (ENSCWAG00000002975) #26	IGF2R (ENSCWAG00000002925) #27	SLC22A1 (ENSCWAG00000002901) #29	SLC22A2 (ENSCWAG00000002880) #30	SLC22A3 (ENSCWAG00000002861) #31	ENSCWAG00000002821 #32	MAP3K4 (ENSCWAG00000002506) #33	AGPAT4 (ENSCWAG00000002443) #34	ENSCWAG00000002429 #36
Pig	MODERN SPECIES		ZDHHC14 (ENSSSCG00000035027)	SNX9 (ENSSSCG00000030535)	SYNJ2 (ENSSSCG00000012315) #7	SERAC1 (ENSSSCG00000012314) #8	GTF2H5 (ENSSSCG00000024019) #9	ENSSSCG00000031776 #10	TMEM181 (ENSSSCG00000024876) #12	DYNLT1 (ENSSSCG00000033107) #13	SYTL3 (ENSSSCG00000004057) #14	EZR (ENSSSCG00000004058) #15	RSPH3 (ENSSSCG00000004055) #16	TAGAP (ENSSSCG00000004053) #17	FNDC1 (ENSSSCG00000004052) #18	SOD2 (ENSSSCG00000040317) #20	WTAP (ENSSSCG00000004050) #21	ACAT2 (ENSSSCG00000004049) #22	TCP1 (ENSSSCG00000004048) #23	MRPL18 (ENSSSCG00000004047) #24	PNLDC1 (ENSSSCG00000004046) #25	MAS1 (ENSSSCG00000059431) #26	IGF2R (ENSSSCG00000004044) #27	SLC22A1 (ENSSSCG00000004041) #29	SLC22A2 (ENSSSCG00000004040) #30	SLC22A3 (ENSSSCG00000004039) #31	PLG (ENSSSCG00000004038) #32	MAP3K4 (ENSSSCG00000004037) #33	AGPAT4 (ENSSSCG00000004033) #34	ENSSSCG00000053549	PRKN (ENSSSCG00000004032) #36	ENSSSCG00000047165	PACRG (ENSSSCG00000038153)
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Equus	ANCESTRAL SPECIES	46	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Donkey	MODERN SPECIES	20	SNX9 (ENSEASG00005018899)	SYNJ2 (ENSEASG00005018902) #7	SERAC1 (ENSEASG00005018908) #8	ENSEASG00005032334 #9	TULP4 (ENSEASG00005018912) #10	TMEM181 (ENSEASG00005018921) #12	DYNLT1 (ENSEASG00005018942) #13	SYTL3 (ENSEASG00005018960) #14	EZR (ENSEASG00005018988) #15	RSPH3 (ENSEASG00005018991) #16	TAGAP (ENSEASG00005018994) #17	FNDC1 (ENSEASG00005019003) #18	ENSEASG00005019012 #20	ENSEASG00005023660 ##21	WTAP (ENSEASG00005024385) #21	ACAT2 (ENSEASG00005019019) #22	TCP1 (ENSEASG00005019021) #23	ENSEASG00005028667 #24	PNLDC1 (ENSEASG00005019029) #25	MAS1 (ENSEASG00005019033) #26	IGF2R (ENSEASG00005019232) #27	SLC22A1 (ENSEASG00005019667) #29	SLC22A2 (ENSEASG00005019670) #30	SLC22A3 (ENSEASG00005019679) #31	ENSEASG00005019697 #32	MAP3K4 (ENSEASG00005019701) #33	ENSEASG00005019709	ENSEASG00005019711 #34	PRKN (ENSEASG00005019721) #36	PACRG (ENSEASG00005019723)	QKI (ENSEASG00005019724)
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Megabat	MODERN SPECIES	4031														SOD2 (ENSPVAG00000005302) #20	WTAP (ENSPVAG00000005310) #21	ACAT2 (ENSPVAG00000005312) #22	TCP1 (ENSPVAG00000005316) #23	MRPL18 (ENSPVAG00000005322) #24	PNLDC1 (ENSPVAG00000005325) #25	MAS1 (ENSPVAG00000005330) #26	IGF2R (ENSPVAG00000005331) #27	SLC22A1 (ENSPVAG00000005337) #29
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Greater horseshoe bat	MODERN SPECIES	21	SYNJ2 (ENSRFEG00010020202) #7	SERAC1 (ENSRFEG00010020518) #8	GTF2H5 (ENSRFEG00010005282) #9	TULP4 (ENSRFEG00010005329) #10	TMEM181 (ENSRFEG00010005412) #12	ENSRFEG00010005488	ENSRFEG00010005510 #13	ENSRFEG00010005541 #14	ENSRFEG00010005565 #14	EZR (ENSRFEG00010005668) #15	RSPH3 (ENSRFEG00010005806) #16	TAGAP (ENSRFEG00010005835) #17	FNDC1 (ENSRFEG00010005884) #18	SOD2 (ENSRFEG00010005963) #20	ENSRFEG00010006054 #21	ACAT2 (ENSRFEG00010006101) #22	ENSRFEG00010006182 #23	MRPL18 (ENSRFEG00010006349) #24	PNLDC1 (ENSRFEG00010006385) #25	MAS1 (ENSRFEG00010006507) #26	IGF2R (ENSRFEG00010006536) #27	SLC22A1 (ENSRFEG00010006710) #29	SLC22A2 (ENSRFEG00010006879) #30	ENSRFEG00010007005	SLC22A3 (ENSRFEG00010007045) #31	ENSRFEG00010007176 #32	MAP3K4 (ENSRFEG00010007347) #33	AGPAT4 (ENSRFEG00010008317) #34	PRKN (ENSRFEG00010008431) #36	PACRG (ENSRFEG00010008690)	QKI (ENSRFEG00010008753)
Microbat	MODERN SPECIES	1439										ENSMLUG00000001931 #15	RSPH3 (ENSMLUG00000012768) #16	TAGAP (ENSMLUG00000012777) #17	FNDC1 (ENSMLUG00000029080) #18	SOD2 (ENSMLUG00000012242) #20	WTAP (ENSMLUG00000000721) #21	ACAT2 (ENSMLUG00000000725) #22	TCP1 (ENSMLUG00000000732) #23	MRPL18 (ENSMLUG00000000743) #24	PNLDC1 (ENSMLUG00000000747) #25
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.n #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.n #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
lion	MODERN SPECIES	5	SYNJ2 (ENSPLOG00000002967) #7	ENSPLOG00000003092	SERAC1 (ENSPLOG00000003108) #8	GTF2H5 (ENSPLOG00000003144) #9	TULP4 (ENSPLOG00000003250) #10	ENSPLOG00000003310	TMEM181 (ENSPLOG00000003343) #12	DYNLT1 (ENSPLOG00000003373) #13	SYTL3 (ENSPLOG00000003399) #14	EZR (ENSPLOG00000003444) #15	RSPH3 (ENSPLOG00000003506) #16	TAGAP (ENSPLOG00000003565) #17	FNDC1 (ENSPLOG00000003601) #18	SOD2 (ENSPLOG00000003669) #20	WTAP (ENSPLOG00000003697) #21	ACAT2 (ENSPLOG00000003718) #22	TCP1 (ENSPLOG00000003746) #23	MRPL18 (ENSPLOG00000003790) #24	PNLDC1 (ENSPLOG00000003816) #25	MAS1 (ENSPLOG00000003857) #26	IGF2R (ENSPLOG00000003880) #27	SLC22A1 (ENSPLOG00000004002) #29	SLC22A2 (ENSPLOG00000004027) #30	SLC22A3 (ENSPLOG00000004048) #31	ENSPLOG00000004061 #32	ENSPLOG00000004079 #32	ENSPLOG00000004087 #32	MAP3K4 (ENSPLOG00000004139) #33	AGPAT4 (ENSPLOG00000004245) #34	PRKN (ENSPLOG00000004285) #36	PACRG (ENSPLOG00000004324)
leopard	MODERN SPECIES	59	ZDHHC14 (ENSPPRG00000009654)	SNX9 (ENSPPRG00000009191)	SYNJ2 (ENSPPRG00000009068) #7	ENSPPRG00000016782	SERAC1 (ENSPPRG00000007784) #8	GTF2H5 (ENSPPRG00000007199) #9	TULP4 (ENSPPRG00000006978) #10	TMEM181 (ENSPPRG00000006100) #12	DYNLT1 (ENSPPRG00000005411) #13	SYTL3 (ENSPPRG00000004402) #14	EZR (ENSPPRG00000002344) #15	RSPH3 (ENSPPRG00000001447) #16	ENSPPRG00000000588 #17	SOD2 (ENSPPRG00000019418) #20	WTAP (ENSPPRG00000016764) #21	ACAT2 (ENSPPRG00000014607) #22	TCP1 (ENSPPRG00000014032) #23	MRPL18 (ENSPPRG00000013063) #24	PNLDC1 (ENSPPRG00000012854) #25	MAS1 (ENSPPRG00000016120) #26	IGF2R (ENSPPRG00000010975) #27	SLC22A1 (ENSPPRG00000009083) #29	SLC22A2 (ENSPPRG00000008200) #30	SLC22A3 (ENSPPRG00000007817) #31	ENSPPRG00000007637 #32	MAP3K4 (ENSPPRG00000007372) #33	AGPAT4 (ENSPPRG00000003125) #34	PRKN (ENSPPRG00000002801) #36	PACRG (ENSPPRG00000018305)	QKI (ENSPPRG00000013383)	C6orf118 (ENSPPRG00000012423)
Tiger	MODERN SPECIES	551	ZDHHC14 (ENSPTIG00000014488)	SNX9 (ENSPTIG00000016966)	SYNJ2 (ENSPTIG00000018780) #7	ENSPTIG00000005689 #8	GTF2H5 (ENSPTIG00000006736) #9	TULP4 (ENSPTIG00000007104) #10	TMEM181 (ENSPTIG00000011656) #12	DYNLT1 (ENSPTIG00000015848) #13	SYTL3 (ENSPTIG00000016444) #14	EZR (ENSPTIG00000003011) #15	RSPH3 (ENSPTIG00000010790) #16	ENSPTIG00000013679 #17	ENSPTIG00000014899 #17	SOD2 (ENSPTIG00000018855) #20	WTAP (ENSPTIG00000004824) #21	ACAT2 (ENSPTIG00000006762) #22	TCP1 (ENSPTIG00000007384) #23	MRPL18 (ENSPTIG00000010107) #24	PNLDC1 (ENSPTIG00000011501) #25	MAS1 (ENSPTIG00000001177) #26	ENSPTIG00000014351	IGF2R (ENSPTIG00000015202) #27	SLC22A1 (ENSPTIG00000019426) #29	SLC22A2 (ENSPTIG00000006985) #30	SLC22A3 (ENSPTIG00000008644) #31	ENSPTIG00000010411 #32	MAP3K4 (ENSPTIG00000017590) #33	AGPAT4 (ENSPTIG00000021603) #34	PRKN (ENSPTIG00000021925) #36	PACRG (ENSPTIG00000004368)	ENSPTIG00000007481
Cat	MODERN SPECIES	236	ZDHHC14 (ENSFCAG00000006280)	SNX9 (ENSFCAG00000010853)	SYNJ2 (ENSFCAG00000010854) #7	SERAC1 (ENSFCAG00000010855) #8	GTF2H5 (ENSFCAG00000034208) #9	TULP4 (ENSFCAG00000007987) #10	TMEM181 (ENSFCAG00000007988) #12	DYNLT1 (ENSFCAG00000007990) #13	SYTL3 (ENSFCAG00000007991) #14	EZR (ENSFCAG00000007992) #15	RSPH3 (ENSFCAG00000028166) #16	TAGAP (ENSFCAG00000014702) #17	FNDC1 (ENSFCAG00000022317) #18	SOD2 (ENSFCAG00000002843) #20	WTAP (ENSFCAG00000002844) #21	ACAT2 (ENSFCAG00000002845) #22	TCP1 (ENSFCAG00000002846) #23	MRPL18 (ENSFCAG00000002847) #24	PNLDC1 (ENSFCAG00000002848) #25	MAS1 (ENSFCAG00000002849) #26	IGF2R (ENSFCAG00000002850) #27	SLC22A1 (ENSFCAG00000002851) #29	SLC22A2 (ENSFCAG00000002852) #30	SLC22A3 (ENSFCAG00000000355) #31	PLG (ENSFCAG00000023975) #32	MAP3K4 (ENSFCAG00000000356) #33	ENSFCAG00000038094	AGPAT4 (ENSFCAG00000000357) #34	PRKN (ENSFCAG00000038081) #36	ENSFCAG00000034013	PACRG (ENSFCAG00000028010)
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Canidae	ANCESTRAL SPECIES	34	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000153524.b.a.a	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00940000157330	ENSGT00940000155310.b
Dingo	MODERN SPECIES	125	SNX9 (ENSCAFG00020015786)	SYNJ2 (ENSCAFG00020015809) #7	SERAC1 (ENSCAFG00020016376) #8	TULP4 (ENSCAFG00020017632) #10	ENSCAFG00020017637	TMEM181 (ENSCAFG00020017638) #12	ENSCAFG00020017657 #13	SYTL3 (ENSCAFG00020017661) #14	EZR (ENSCAFG00020017702) #15	RSPH3 (ENSCAFG00020017704) #16	ENSCAFG00020017705	TAGAP (ENSCAFG00020017706) #17	FNDC1 (ENSCAFG00020017707) #18	SOD2 (ENSCAFG00020017714) #20	WTAP (ENSCAFG00020017718) #21	ACAT2 (ENSCAFG00020017725) #22	TCP1 (ENSCAFG00020017729) #23	MRPL18 (ENSCAFG00020017736) #24	PNLDC1 (ENSCAFG00020017742) #25	MAS1 (ENSCAFG00020017759) #26	IGF2R (ENSCAFG00020017822) #27	ENSCAFG00020018698 #29	SLC22A2 (ENSCAFG00020018701) #30	ENSCAFG00020018703	SLC22A3 (ENSCAFG00020018716) #31	ENSCAFG00020018797 #32	MAP3K4 (ENSCAFG00020018821) #33	AGPAT4 (ENSCAFG00020018873) #34	ENSCAFG00020018877 #36	ENSCAFG00020018908 #36	ENSCAFG00020018975 #36
Dog	MODERN SPECIES		SNX9 (ENSCAFG00845000878)	SYNJ2 (ENSCAFG00845000995) #7	SERAC1 (ENSCAFG00845001134) #8	GTF2H5 (ENSCAFG00845001194) #9	TULP4 (ENSCAFG00845001243) #10	TMEM181 (ENSCAFG00845001296) #12	DYNLT1 (ENSCAFG00845001317) #13	SYTL3 (ENSCAFG00845001348) #14	EZR (ENSCAFG00845001373) #15	RSPH3 (ENSCAFG00845001431) #16	ENSCAFG00845001443	TAGAP (ENSCAFG00845001461) #17	FNDC1 (ENSCAFG00845001542) #18	SOD2 (ENSCAFG00845001754) #20	WTAP (ENSCAFG00845001806) #21	ACAT2 (ENSCAFG00845001848) #22	TCP1 (ENSCAFG00845001904) #23	MRPL18 (ENSCAFG00845001976) #24	PNLDC1 (ENSCAFG00845001998) #25	MAS1 (ENSCAFG00845002042) #26	IGF2R (ENSCAFG00845002089) #27	SLC22A1 (ENSCAFG00845002132) #29	SLC22A2 (ENSCAFG00845002163) #30	SLC22A3 (ENSCAFG00845002183) #31	PLG (ENSCAFG00845002222) #32	MAP3K4 (ENSCAFG00845002271) #33	AGPAT4 (ENSCAFG00845002356) #34	PRKN (ENSCAFG00845002459) #36	PACRG (ENSCAFG00845002583)	QKI (ENSCAFG00845002617)	ENSCAFG00845004368
Red fox	MODERN SPECIES	157	ENSVVUG00000007425	SYNJ2 (ENSVVUG00000007407) #7	SERAC1 (ENSVVUG00000007380) #8	TULP4 (ENSVVUG00000007373) #10	TMEM181 (ENSVVUG00000006803) #12	DYNLT1 (ENSVVUG00000006778) #13	SYTL3 (ENSVVUG00000006766) #14	EZR (ENSVVUG00000006757) #15	RSPH3 (ENSVVUG00000006742) #16	ENSVVUG00000006737	TAGAP (ENSVVUG00000006731) #17	FNDC1 (ENSVVUG00000006697) #18	ENSVVUG00000006676 #20	WTAP (ENSVVUG00000006645) #21	ENSVVUG00000006644	ACAT2 (ENSVVUG00000006634) #22	TCP1 (ENSVVUG00000006612) #23	MRPL18 (ENSVVUG00000006607) #24	PNLDC1 (ENSVVUG00000006586) #25	MAS1 (ENSVVUG00000006583) #26	IGF2R (ENSVVUG00000002250) #27	SLC22A1 (ENSVVUG00000001730) #29	SLC22A2 (ENSVVUG00000001717) #30
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
American mink	MODERN SPECIES	4	ZDHHC14 (ENSNVIG00000009059)	SNX9 (ENSNVIG00000009085)	SYNJ2 (ENSNVIG00000009140) #7	SERAC1 (ENSNVIG00000009167) #8	TF2H5 (ENSNVIG00000009285) #9	TULP4 (ENSNVIG00000009306) #10	TMEM181 (ENSNVIG00000009381) #12	DYNLT1 (ENSNVIG00000009650) #13	SYTL3 (ENSNVIG00000009680) #14	EZR (ENSNVIG00000009830) #15	TAGAP (ENSNVIG00000009891) #17	FNDC1 (ENSNVIG00000009936) #18	ENSNVIG00000010133	SODM (ENSNVIG00000010142) #20	WTAP (ENSNVIG00000010202) #21	ACAT2 (ENSNVIG00000010262) #22	TCP1 (ENSNVIG00000010276) #23	RM18 (ENSNVIG00000010351) #24	PNLDC1 (ENSNVIG00000010375) #25	MAS1 (ENSNVIG00000010425) #26	IGF2R (ENSNVIG00000010447) #27	SLC22A1 (ENSNVIG00000010572) #29	SLC22A2 (ENSNVIG00000010662) #30	SLC22A3 (ENSNVIG00000010693) #31	ENSNVIG00000010704 #32	MAP3K4 (ENSNVIG00000010747) #33	ENSNVIG00000010894	AGPAT4 (ENSNVIG00000010903) #34	ENSNVIG00000010918 #36
Ferret	MODERN SPECIES	321	ZDHHC14 (ENSMPUG00000005351)	SNX9 (ENSMPUG00000005333)	SYNJ2 (ENSMPUG00000005323) #7	SERAC1 (ENSMPUG00000005304) #8	GTF2H5 (ENSMPUG00000005299) #9	TULP4 (ENSMPUG00000005290) #10	TMEM181 (ENSMPUG00000005207) #12	DYNLT1 (ENSMPUG00000005205) #13	SYTL3 (ENSMPUG00000005195) #14	EZR (ENSMPUG00000005183) #15	RSPH3 (ENSMPUG00000005176) #16	TAGAP (ENSMPUG00000005167) #17	FNDC1 (ENSMPUG00000005104) #18	SOD2 (ENSMPUG00000005045) #20	WTAP (ENSMPUG00000005036) #21	ACAT2 (ENSMPUG00000005030) #22	TCP1 (ENSMPUG00000005020) #23	MRPL18 (ENSMPUG00000005009) #24	PNLDC1 (ENSMPUG00000004920) #25	MAS1 (ENSMPUG00000019617) #26	ENSMPUG00000019615	IGF2R (ENSMPUG00000004888) #27	SLC22A1 (ENSMPUG00000004685) #29	SLC22A2 (ENSMPUG00000004670) #30	SLC22A3 (ENSMPUG00000004654) #31	ENSMPUG00000004632 #32	MAP3K4 (ENSMPUG00000004612) #33	AGPAT4 (ENSMPUG00000004604) #34	ENSMPUG00000004601 #36	ENSMPUG00000004595	ENSMPUG00000004593 #36
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00950000186188	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Giant Panda	MODERN SPECIES	1	SNX9 (ENSAMEG00000009626)	SYNJ2 (ENSAMEG00000009581) #7	SERAC1 (ENSAMEG00000009567) #8	GTF2H5 (ENSAMEG00000028196) #9	TULP4 (ENSAMEG00000009544) #10	ENSAMEG00000025985	TMEM181 (ENSAMEG00000009492) #12	DYNLT1 (ENSAMEG00000009483) #13	SYTL3 (ENSAMEG00000009448) #14	EZR (ENSAMEG00000009395) #15	RSPH3 (ENSAMEG00000009373) #16	TAGAP (ENSAMEG00000009357) #17	FNDC1 (ENSAMEG00000003564) #18	ENSAMEG00000015466 #20	WTAP (ENSAMEG00000025264) #21	ACAT2 (ENSAMEG00000015430) #22	TCP1 (ENSAMEG00000015405) #23	MRPL18 (ENSAMEG00000015398) #24	PNLDC1 (ENSAMEG00000015371) #25	MAS1 (ENSAMEG00000019584) #26	IGF2R (ENSAMEG00000015172) #27	SLC22A1 (ENSAMEG00000015110) #29	SLC22A2 (ENSAMEG00000015045) #30	SLC22A3 (ENSAMEG00000015037) #31	ENSAMEG00000015960 #32	MAP3K4 (ENSAMEG00000015908) #33	ENSAMEG00000015885 #34	PRKN (ENSAMEG00000015876) #36	PACRG (ENSAMEG00000008449)	QKI (ENSAMEG00000008459)	ENSAMEG00000027289
Ursus	ANCESTRAL SPECIES	81	ENSGT00940000179662	ENSGT00940000160715.e #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00950000186188	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00970000197976	ENSGT00940000157330	ENSGT00940000155310.b
American black bear	MODERN SPECIES	5145																ENSUAMG00000015931 #22	TCP1 (ENSUAMG00000015793) #23	MRPL18 (ENSUAMG00000015786) #24	PNLDC1 (ENSUAMG00000015783) #25	MAS1 (ENSUAMG00000015780) #26
Polar bear	MODERN SPECIES	150	SYNJ2 (ENSUMAG00000012826) #7	SERAC1 (ENSUMAG00000012320) #8	GTF2H5 (ENSUMAG00000012271) #9	TULP4 (ENSUMAG00000012196) #10	ENSUMAG00000012177	TMEM181 (ENSUMAG00000012155) #12	DYNLT1 (ENSUMAG00000012151) #13	SYTL3 (ENSUMAG00000012070) #14	EZR (ENSUMAG00000012047) #15	RSPH3 (ENSUMAG00000012040) #16	TAGAP (ENSUMAG00000012036) #17	FNDC1 (ENSUMAG00000011974) #18	SOD2 (ENSUMAG00000011961) #20	WTAP (ENSUMAG00000011957) #21	ENSUMAG00000011954	ACAT2 (ENSUMAG00000011942) #22	TCP1 (ENSUMAG00000011924) #23	MRPL18 (ENSUMAG00000011916) #24	PNLDC1 (ENSUMAG00000011903) #25	MAS1 (ENSUMAG00000011898) #26	IGF2R (ENSUMAG00000011876) #27	SLC22A1 (ENSUMAG00000011827) #29	SLC22A2 (ENSUMAG00000011818) #30	SLC22A3 (ENSUMAG00000011813) #31	ENSUMAG00000011793 #32	MAP3K4 (ENSUMAG00000011760) #33	AGPAT4 (ENSUMAG00000011739) #34	ENSUMAG00000011729 #36	ENSUMAG00000011710	ENSUMAG00000011702 #36	ENSUMAG00000011694
Eulipotyphla	ANCESTRAL SPECIES	2107																ENSGT01030000234626.B #22	ENSGT00550000074878 #23
Common shrew	MODERN SPECIES	1517																ACAT2 (ENSSARG00000002451) #22	TCP1 (ENSSARG00000002463) #23
Hedgehog	MODERN SPECIES	2118																ACAT2 (ENSEEUG00000002076) #22	TCP1 (ENSEEUG00000002140) #23
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	5661																ENSTBEG00000012375 #22
Tree shrew	MODERN SPECIES	869																ENSTBEG00000008352 #22	TCP1 (ENSTBEG00000008585) #23	PNLDC1 (ENSTBEG00000009131) #25
Glires	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Snx9 (ENSCGRG00001001484)	Synj2 (ENSCGRG00001004257) #7	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521) #8	ENSCGRG00001013373 #9	Tulp4 (ENSCGRG00001020408) #10	Tmem181a (ENSCGRG00001020931) #12	ENSCGRG00001024351 #13	Sytl3 (ENSCGRG00001021896) #14	Ezr (ENSCGRG00001022444) #15	ENSCGRG00001023672 #16	ENSCGRG00001002978 #17	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #23	Mrpl18 (ENSCGRG00001010667) #24	ENSCGRG00001007470 #25	Mas1 (ENSCGRG00001007652) #26	Igf2r (ENSCGRG00001022921) #27	Slc22a1 (ENSCGRG00001023484) #29	Slc22a2 (ENSCGRG00001023859) #30	Slc22a3 (ENSCGRG00001024404) #31	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #32	Map3k4 (ENSCGRG00001023770) #33	Agpat4 (ENSCGRG00001024340) #34	Prkn (ENSCGRG00001011980) #36	ENSCGRG00001009195
Chinese hamster chok1gshd	MODERN SPECIES	1	Synj2 (ENSCGRG00001004257) #7	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521) #8	ENSCGRG00001013373 #9	Tulp4 (ENSCGRG00001020408) #10	Tmem181a (ENSCGRG00001020931) #12	ENSCGRG00001024351 #13	Sytl3 (ENSCGRG00001021896) #14	Ezr (ENSCGRG00001022444) #15	ENSCGRG00001023672 #16	ENSCGRG00001002978 #17	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #23	Mrpl18 (ENSCGRG00001010667) #24	ENSCGRG00001007470 #25	Mas1 (ENSCGRG00001007652) #26	Igf2r (ENSCGRG00001022921) #27	Slc22a1 (ENSCGRG00001023484) #29	Slc22a2 (ENSCGRG00001023859) #30	Slc22a3 (ENSCGRG00001024404) #31	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #32	Map3k4 (ENSCGRG00001023770) #33	Agpat4 (ENSCGRG00001024340) #34	Prkn (ENSCGRG00001011980) #36	ENSCGRG00001009195	Pacrg (ENSCGRG00001010865)
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	358	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054) #7	Serac1 (ENSMOCG00000006727) #8	Gtf2h5 (ENSMOCG00000000992) #9	Tulp4 (ENSMOCG00000020984) #10	ENSMOCG00000013123 #12	ENSMOCG00000011752 #13	Sytl3 (ENSMOCG00000014797) #14	Ezr (ENSMOCG00000016414) #15	ENSMOCG00000018649 #16	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #23	Mrpl18 (ENSMOCG00000016680) #24	Pnldc1 (ENSMOCG00000014287) #25	Mas1 (ENSMOCG00000012154) #26	Igf2r (ENSMOCG00000016653) #27	Slc22a1 (ENSMOCG00000006138) #29	Slc22a2 (ENSMOCG00000000432) #30	Slc22a3 (ENSMOCG00000009699) #31	Plg (ENSMOCG00000021058) #32	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #33	Agpat4 (ENSMOCG00000002544) #34	Prkn (ENSMOCG00000000910) #36	Pacrg (ENSMOCG00000018703)	Qki (ENSMOCG00000008370)
Prairie vole	MODERN SPECIES	358	Tmem242 (ENSMOCG00000011673)	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054) #7	Serac1 (ENSMOCG00000006727) #8	Gtf2h5 (ENSMOCG00000000992) #9	Tulp4 (ENSMOCG00000020984) #10	ENSMOCG00000013123 #12	ENSMOCG00000011752 #13	Sytl3 (ENSMOCG00000014797) #14	Ezr (ENSMOCG00000016414) #15	ENSMOCG00000018649 #16	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #23	Mrpl18 (ENSMOCG00000016680) #24	Pnldc1 (ENSMOCG00000014287) #25	Mas1 (ENSMOCG00000012154) #26	Igf2r (ENSMOCG00000016653) #27	Slc22a1 (ENSMOCG00000006138) #29	Slc22a2 (ENSMOCG00000000432) #30	Slc22a3 (ENSMOCG00000009699) #31	Plg (ENSMOCG00000021058) #32	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #33	Agpat4 (ENSMOCG00000002544) #34	Prkn (ENSMOCG00000000910) #36	Pacrg (ENSMOCG00000018703)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	7	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247) #7	Serac1 (ENSPEMG00000010226) #8	Gtf2h5 (ENSPEMG00000031016) #9	Tulp4 (ENSPEMG00000018536) #10	Tmem181a (ENSPEMG00000000341) #12	ENSPEMG00000018532 #13	Sytl3 (ENSPEMG00000014143) #14	Ezr (ENSPEMG00000008621) #15	ENSPEMG00000009961 #16	ENSPEMG00000010143 #17	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #23	Mrpl18 (ENSPEMG00000016836) #24	Pnldc1 (ENSPEMG00000016301) #25	Mas1 (ENSPEMG00000014302) #26	Igf2r (ENSPEMG00000016189) #27	Slc22a1 (ENSPEMG00000013645) #29	Slc22a2 (ENSPEMG00000009409) #30	Slc22a3 (ENSPEMG00000001370) #31	Plg (ENSPEMG00000006099) #32	Map3k4 (ENSPEMG00000011456) #33	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #34	Prkn (ENSPEMG00000013734) #36	ENSPEMG00000028613	ENSPEMG00000025332
Northern American deer mouse	MODERN SPECIES	7	Zdhhc14 (ENSPEMG00000019121)	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247) #7	Serac1 (ENSPEMG00000010226) #8	Gtf2h5 (ENSPEMG00000031016) #9	Tulp4 (ENSPEMG00000018536) #10	Tmem181a (ENSPEMG00000000341) #12	ENSPEMG00000018532 #13	Sytl3 (ENSPEMG00000014143) #14	Ezr (ENSPEMG00000008621) #15	ENSPEMG00000009961 #16	ENSPEMG00000010143 #17	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #23	Mrpl18 (ENSPEMG00000016836) #24	Pnldc1 (ENSPEMG00000016301) #25	Mas1 (ENSPEMG00000014302) #26	Igf2r (ENSPEMG00000016189) #27	Slc22a1 (ENSPEMG00000013645) #29	Slc22a2 (ENSPEMG00000009409) #30	Slc22a3 (ENSPEMG00000001370) #31	Plg (ENSPEMG00000006099) #32	Map3k4 (ENSPEMG00000011456) #33	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #34	Prkn (ENSPEMG00000013734) #36	ENSPEMG00000028613
Murinae	ANCESTRAL SPECIES	29	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114) #7	Serac1 (ENSRNOG00000017889) #8	Gtf2h5 (ENSRNOG00000018007) #9	Tulp4 (ENSRNOG00000018012) #10	Tmem181 (ENSRNOG00000018158) #12	Dynlt1 (ENSRNOG00000018207) #13	Sytl3 (ENSRNOG00000018321) #14	Ezr (ENSRNOG00000018524) #15	Rsph3 (ENSRNOG00000018762) #16	Tagap (ENSRNOG00000018915) #17	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #23	Mrpl18 (ENSRNOG00000014582) #24	Pnldc1 (ENSRNOG00000023140) #25	Mas1 (ENSRNOG00000014971) #26	Igf2r (ENSRNOG00000014997) #27	Slc22a1 (ENSRNOG00000016337) #29	Slc22a2 (ENSRNOG00000016625) #30	Slc22a3 (ENSRNOG00000022946) #31	Plg (ENSRNOG00000017223) #32	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #33	Agpat4 (ENSRNOG00000017731) #34	Prkn (ENSRNOG00000055547) #36	Pacrg (ENSRNOG00000068261)
Rat	MODERN SPECIES		Zdhhc14 (ENSRNOG00000029049)	Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114) #7	Serac1 (ENSRNOG00000017889) #8	Gtf2h5 (ENSRNOG00000018007) #9	Tulp4 (ENSRNOG00000018012) #10	Tmem181 (ENSRNOG00000018158) #12	Dynlt1 (ENSRNOG00000018207) #13	Sytl3 (ENSRNOG00000018321) #14	Ezr (ENSRNOG00000018524) #15	Rsph3 (ENSRNOG00000018762) #16	Tagap (ENSRNOG00000018915) #17	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #23	Mrpl18 (ENSRNOG00000014582) #24	Pnldc1 (ENSRNOG00000023140) #25	Mas1 (ENSRNOG00000014971) #26	Igf2r (ENSRNOG00000014997) #27	Slc22a1 (ENSRNOG00000016337) #29	Slc22a2 (ENSRNOG00000016625) #30	Slc22a3 (ENSRNOG00000022946) #31	Plg (ENSRNOG00000017223) #32	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #33	Agpat4 (ENSRNOG00000017731) #34	Prkn (ENSRNOG00000055547) #36
Rat	MODERN SPECIES	5	Corin (ENSRNOG00000002302)	ENSRNOG00000069538	Atp10d (ENSRNOG00000002312)	Commd8 (ENSRNOG00000002320)	ENSRNOG00000066731	Gabrb1 (ENSRNOG00000002327)	Gabra4 (ENSRNOG00000002336)	Cox7b2 (ENSRNOG00000057953)	Gabra2 (ENSRNOG00000002349)	Gabrg1 (ENSRNOG00000002360)	ENSRNOG00000063124	Gnpda2 (ENSRNOG00000002177)	Guf1 (ENSRNOG00000002207)	Yipf7 (ENSRNOG00000002224)	Kctd8 (ENSRNOG00000063710)	ENSRNOG00000067037 #22	AABR07015525.1 (ENSRNOG00000056900)	Rtraf-ps2 (ENSRNOG00000029734)	ENSRNOG00000070341	Grxcr1 (ENSRNOG00000038891)	Atp8a1 (ENSRNOG00000034200)	Shisa3 (ENSRNOG00000025670)	ENSRNOG00000067394	Bend4 (ENSRNOG00000053303)	Slc30a9 (ENSRNOG00000002246)	Tmem33 (ENSRNOG00000002254)	Phox2b (ENSRNOG00000051929)	ENSRNOG00000065993	Limch1 (ENSRNOG00000002318)	Uchl1 (ENSRNOG00000002343)	Apbb2 (ENSRNOG00000063717)
Mus	ANCESTRAL SPECIES	21	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	13	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344) #7	Serac1 (MGP_PahariEiJ_G0023345) #8	Gtf2h5 (MGP_PahariEiJ_G0023346) #9	Tulp4 (MGP_PahariEiJ_G0023347) #10	Tmem181a (MGP_PahariEiJ_G0023348) #12	Sytl3 (MGP_PahariEiJ_G0023349) #14	Ezr (MGP_PahariEiJ_G0023350) #15	MGP_PahariEiJ_G0023351 #16	MGP_PahariEiJ_G0023352 #16	MGP_PahariEiJ_G0023353 #17	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #23	Mrpl18 (MGP_PahariEiJ_G0023360) #24	Pnldc1 (MGP_PahariEiJ_G0023361) #25	Mrgprh (MGP_PahariEiJ_G0023362) #26	Mas1 (MGP_PahariEiJ_G0023363) #26	Igf2r (MGP_PahariEiJ_G0023364) #27	Slc22a1 (MGP_PahariEiJ_G0023365) #29	Slc22a2 (MGP_PahariEiJ_G0023366) #30	Slc22a3 (MGP_PahariEiJ_G0023367) #31	Plg (MGP_PahariEiJ_G0023368) #32	Map3k4 (MGP_PahariEiJ_G0023369) #33	Agpat4 (MGP_PahariEiJ_G0023370) #34	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372)	Qki (MGP_PahariEiJ_G0023373)
Shrew mouse	MODERN SPECIES	13	Zdhhc14 (MGP_PahariEiJ_G0023342)	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344) #7	Serac1 (MGP_PahariEiJ_G0023345) #8	Gtf2h5 (MGP_PahariEiJ_G0023346) #9	Tulp4 (MGP_PahariEiJ_G0023347) #10	Tmem181a (MGP_PahariEiJ_G0023348) #12	Sytl3 (MGP_PahariEiJ_G0023349) #14	Ezr (MGP_PahariEiJ_G0023350) #15	MGP_PahariEiJ_G0023351 #16	MGP_PahariEiJ_G0023352 #16	MGP_PahariEiJ_G0023353 #17	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #23	Mrpl18 (MGP_PahariEiJ_G0023360) #24	Pnldc1 (MGP_PahariEiJ_G0023361) #25	Mrgprh (MGP_PahariEiJ_G0023362) #26	Mas1 (MGP_PahariEiJ_G0023363) #26	Igf2r (MGP_PahariEiJ_G0023364) #27	Slc22a1 (MGP_PahariEiJ_G0023365) #29	Slc22a2 (MGP_PahariEiJ_G0023366) #30	Slc22a3 (MGP_PahariEiJ_G0023367) #31	Plg (MGP_PahariEiJ_G0023368) #32	Map3k4 (MGP_PahariEiJ_G0023369) #33	Agpat4 (MGP_PahariEiJ_G0023370) #34	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372)
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	9														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065.c.a #29	ENSGT00940000162065.d #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Mouse	MODERN SPECIES	8	Thbs2 (ENSMUSG00000023885)	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #23	Mrpl18 (ENSMUSG00000057388) #24	Pnldc1 (ENSMUSG00000073460) #25	Mrgprh (ENSMUSG00000059408) #26	Mas1 (ENSMUSG00000068037) #26	Igf2r (ENSMUSG00000023830) #27	Slc22a1 (ENSMUSG00000023829) #29	Slc22a2 (ENSMUSG00000040966) #30	Slc22a3 (ENSMUSG00000023828) #31	Plg (ENSMUSG00000059481) #32	Map3k4 (ENSMUSG00000014426) #33	Agpat4 (ENSMUSG00000023827) #34	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196)
Mus_C	ANCESTRAL SPECIES	35													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065.c.a #29	ENSGT00940000162065.d #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
spretus	MODERN SPECIES	8	Dll1 (MGP_SPRETEiJ_G0021994)	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #23	Mrpl18 (MGP_SPRETEiJ_G0021976) #24	Pnldc1 (MGP_SPRETEiJ_G0021975) #25	Mrgprh (MGP_SPRETEiJ_G0021974) #26	Mas1 (MGP_SPRETEiJ_G0021973) #26	Igf2r (MGP_SPRETEiJ_G0021972) #27	Slc22a1 (MGP_SPRETEiJ_G0021971) #29	Slc22a2 (MGP_SPRETEiJ_G0021970) #30	Slc22a3 (MGP_SPRETEiJ_G0021969) #31	Plg (MGP_SPRETEiJ_G0021968) #32	Map3k4 (MGP_SPRETEiJ_G0021967) #33	Agpat4 (MGP_SPRETEiJ_G0021966) #34	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964)
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065.c.a #29	ENSGT00940000162065.d #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
Mus_C	ANCESTRAL SPECIES	35												ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065.c.a #29	ENSGT00940000162065.d #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #23	Mrpl18 (MGP_SPRETEiJ_G0021976) #24	Pnldc1 (MGP_SPRETEiJ_G0021975) #25	Mrgprh (MGP_SPRETEiJ_G0021974) #26	Mas1 (MGP_SPRETEiJ_G0021973) #26	Igf2r (MGP_SPRETEiJ_G0021972) #27	Slc22a1 (MGP_SPRETEiJ_G0021971) #29	Slc22a2 (MGP_SPRETEiJ_G0021970) #30	Slc22a3 (MGP_SPRETEiJ_G0021969) #31	Plg (MGP_SPRETEiJ_G0021968) #32	Map3k4 (MGP_SPRETEiJ_G0021967) #33	Agpat4 (MGP_SPRETEiJ_G0021966) #34	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964)	Qki (MGP_SPRETEiJ_G0021963)
Steppe mouse	MODERN SPECIES	2213															ENSMSIG00000026854	ENSMSIG00000026841 #22	Tcp1 (ENSMSIG00000026789) #23	ENSMSIG00000026775 #24	Pnldc1 (ENSMSIG00000026738) #25	Mrgprh (ENSMSIG00000026732) #26	Mas1 (ENSMSIG00000026719) #26	ENSMSIG00000026712	ENSMSIG00000026700	ENSMSIG00000026694	Igf2r (ENSMSIG00000026592) #27	Slc22a1 (ENSMSIG00000026565) #29
Mouse	MODERN SPECIES	8	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #23	Mrpl18 (ENSMUSG00000057388) #24	Pnldc1 (ENSMUSG00000073460) #25	Mrgprh (ENSMUSG00000059408) #26	Mas1 (ENSMUSG00000068037) #26	Igf2r (ENSMUSG00000023830) #27	Slc22a1 (ENSMUSG00000023829) #29	Slc22a2 (ENSMUSG00000040966) #30	Slc22a3 (ENSMUSG00000023828) #31	Plg (ENSMUSG00000059481) #32	Map3k4 (ENSMUSG00000014426) #33	Agpat4 (ENSMUSG00000023827) #34	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196)	Qki (ENSMUSG00000062078)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	8	Synj2 (MGP_CAROLIEiJ_G0021026) #7	Serac1 (MGP_CAROLIEiJ_G0021027) #8	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #9	Tulp4 (MGP_CAROLIEiJ_G0021029) #10	Tmem181a (MGP_CAROLIEiJ_G0021030) #12	MGP_CAROLIEiJ_G0021031 #13	MGP_CAROLIEiJ_G0021032 #13	Sytl3 (MGP_CAROLIEiJ_G0021033) #14	Ezr (MGP_CAROLIEiJ_G0021034) #15	MGP_CAROLIEiJ_G0021035 #16	MGP_CAROLIEiJ_G0021036 #16	MGP_CAROLIEiJ_G0021037 #17	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #23	Mrpl18 (MGP_CAROLIEiJ_G0021044) #24	Pnldc1 (MGP_CAROLIEiJ_G0021045) #25	Mrgprh (MGP_CAROLIEiJ_G0021046) #26	Mas1 (MGP_CAROLIEiJ_G0021047) #26	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #29	Slc22a2 (MGP_CAROLIEiJ_G0021050) #30	Slc22a3 (MGP_CAROLIEiJ_G0021051) #31	Plg (MGP_CAROLIEiJ_G0021052) #32	Map3k4 (MGP_CAROLIEiJ_G0021053) #33	Agpat4 (MGP_CAROLIEiJ_G0021054) #34	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056)
Ryukyu mouse	MODERN SPECIES	8	Serac1 (MGP_CAROLIEiJ_G0021027) #8	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #9	Tulp4 (MGP_CAROLIEiJ_G0021029) #10	Tmem181a (MGP_CAROLIEiJ_G0021030) #12	MGP_CAROLIEiJ_G0021031 #13	MGP_CAROLIEiJ_G0021032 #13	Sytl3 (MGP_CAROLIEiJ_G0021033) #14	Ezr (MGP_CAROLIEiJ_G0021034) #15	MGP_CAROLIEiJ_G0021035 #16	MGP_CAROLIEiJ_G0021036 #16	MGP_CAROLIEiJ_G0021037 #17	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #23	Mrpl18 (MGP_CAROLIEiJ_G0021044) #24	Pnldc1 (MGP_CAROLIEiJ_G0021045) #25	Mrgprh (MGP_CAROLIEiJ_G0021046) #26	Mas1 (MGP_CAROLIEiJ_G0021047) #26	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #29	Slc22a2 (MGP_CAROLIEiJ_G0021050) #30	Slc22a3 (MGP_CAROLIEiJ_G0021051) #31	Plg (MGP_CAROLIEiJ_G0021052) #32	Map3k4 (MGP_CAROLIEiJ_G0021053) #33	Agpat4 (MGP_CAROLIEiJ_G0021054) #34	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056)	Qki (MGP_CAROLIEiJ_G0021057)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	863													Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #23	Mrpl18 (ENSNGAG00000020549) #24	Pnldc1 (ENSNGAG00000017714) #25	Mas1 (ENSNGAG00000011460) #26	Igf2r (ENSNGAG00000015486) #27	Slc22a1 (ENSNGAG00000022062) #29
Upper Galilee mountains blind mole rat	MODERN SPECIES	863												Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #23	Mrpl18 (ENSNGAG00000020549) #24	Pnldc1 (ENSNGAG00000017714) #25	Mas1 (ENSNGAG00000011460) #26	Igf2r (ENSNGAG00000015486) #27	Slc22a1 (ENSNGAG00000022062) #29
Lesser Egyptian jerboa	MODERN SPECIES	44	Synj2 (ENSJJAG00000014436) #7	Serac1 (ENSJJAG00000008471) #8	Gtf2h5 (ENSJJAG00000014212) #9	ENSJJAG00000018115	ENSJJAG00000007576	Tulp4 (ENSJJAG00000015161) #10	ENSJJAG00000016901 #12	ENSJJAG00000021394 #13	Sytl3 (ENSJJAG00000000977) #14	Ezr (ENSJJAG00000018957) #15	ENSJJAG00000008005 #16	ENSJJAG00000002202 #17	Fndc1 (ENSJJAG00000019101) #18	Sod2 (ENSJJAG00000018002) #20	Wtap (ENSJJAG00000017886) #21	ENSJJAG00000022555 #22	ENSJJAG00000019850 #23	Pnldc1 (ENSJJAG00000009937) #25	Mas1 (ENSJJAG00000011567) #26	Igf2r (ENSJJAG00000019554) #27	Slc22a1 (ENSJJAG00000017119) #29	Slc22a2 (ENSJJAG00000020676) #30	Slc22a3 (ENSJJAG00000015842) #31	Plg (ENSJJAG00000023805) #32	ENSJJAG00000016960 #33	ENSJJAG00000017984 #33	Agpat4 (ENSJJAG00000024380) #34	Prkn (ENSJJAG00000011282) #36	ENSJJAG00000022340	Pacrg (ENSJJAG00000013819)	Qki (ENSJJAG00000022765)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	404											Adamts19 (ENSDORG00000012822)	Minar2 (ENSDORG00000026115)	Chsy3 (ENSDORG00000002765)	ENSDORG00000024861	ENSDORG00000026780	ENSDORG00000023323 #22	Smim3 (ENSDORG00000028277)	Dctn4 (ENSDORG00000008190)	Rbm22 (ENSDORG00000005329)	Myoz3 (ENSDORG00000005327)	Synpo (ENSDORG00000005325)	Ndst1 (ENSDORG00000016071)	ENSDORG00000007146	Cd74 (ENSDORG00000001514)	Arsi (ENSDORG00000009222)	Camk2a (ENSDORG00000009223)	Slc6a7 (ENSDORG00000000014)	Cdx1 (ENSDORG00000029630)	Pdgfrb (ENSDORG00000009895)	Csf1r (ENSDORG00000009892)	Hmgxb3 (ENSDORG00000009890)
Kangaroo rat	MODERN SPECIES	396					ENSDORG00000008869	Snx9 (ENSDORG00000007327)	Synj2 (ENSDORG00000014128) #7	Serac1 (ENSDORG00000014130) #8	ENSDORG00000005088 #9	Tulp4 (ENSDORG00000024333) #10	ENSDORG00000014045 #12	ENSDORG00000014053 #13	Ezr (ENSDORG00000015424) #15	Sod2 (ENSDORG00000001358) #20	ENSDORG00000026059 #21	ENSDORG00000011505 #22	ENSDORG00000011510 #23	Pnldc1 (ENSDORG00000011517) #25	Mas1 (ENSDORG00000003320) #26	Igf2r (ENSDORG00000009527) #27	Slc22a1 (ENSDORG00000011523) #29	Slc22a2 (ENSDORG00000008400) #30	Slc22a3 (ENSDORG00000008402) #31	Plg (ENSDORG00000024248) #32	ENSDORG00000025664 #33	Agpat4 (ENSDORG00000015627) #34	ENSDORG00000027142 #36	ENSDORG00000026934	Qki (ENSDORG00000008151)	Pde10a (ENSDORG00000005783)	ENSDORG00000012736
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.`b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000015545.v	ENSGT00390000011034 #36	ENSGT00940000157330
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.`b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000015545.v	ENSGT00390000011034 #36	ENSGT00940000157330
Squirrel	MODERN SPECIES	89	SNX9 (ENSSTOG00000010620)	SYNJ2 (ENSSTOG00000016474) #7	SERAC1 (ENSSTOG00000016478) #8	GTF2H5 (ENSSTOG00000003476) #9	TULP4 (ENSSTOG00000006169) #10	TMEM181 (ENSSTOG00000006218) #12	ENSSTOG00000006273 #13	SYTL3 (ENSSTOG00000006284) #14	EZR (ENSSTOG00000006325) #15	RSPH3 (ENSSTOG00000021240) #16	TAGAP (ENSSTOG00000021563) #17	FNDC1 (ENSSTOG00000007105) #18	ENSSTOG00000033536	SOD2 (ENSSTOG00000008738) #20	WTAP (ENSSTOG00000026157) #21	ACAT2 (ENSSTOG00000005564) #22	ENSSTOG00000005572 #23	MRPL18 (ENSSTOG00000005583) #24	PNLDC1 (ENSSTOG00000005595) #25	ENSSTOG00000026373 #26	MAS1 (ENSSTOG00000029761) #26	IGF2R (ENSSTOG00000008960) #27	SLC22A1 (ENSSTOG00000009024) #29	SLC22A2 (ENSSTOG00000010147) #30	SLC22A3 (ENSSTOG00000007036) #31	ENSSTOG00000020315 #32	MAP3K4 (ENSSTOG00000002821) #33	AGPAT4 (ENSSTOG00000002544) #34	PRKN (ENSSTOG00000021965) #36	ENSSTOG00000034364	PACRG (ENSSTOG00000010375)
Alpin marmot	MODERN SPECIES	55	SNX9 (ENSMMMG00000012106)	SYNJ2 (ENSMMMG00000010186) #7	SERAC1 (ENSMMMG00000010093) #8	GTF2H5 (ENSMMMG00000010071) #9	ENSMMMG00000010057	TULP4 (ENSMMMG00000010029) #10	TMEM181 (ENSMMMG00000009973) #12	ENSMMMG00000009958 #13	SYTL3 (ENSMMMG00000009912) #14	EZR (ENSMMMG00000009906) #15	RSPH3 (ENSMMMG00000009878) #16	TAGAP (ENSMMMG00000009875) #17	ENSMMMG00000009777	SOD2 (ENSMMMG00000009744) #20	WTAP (ENSMMMG00000009724) #21	ACAT2 (ENSMMMG00000009712) #22	TCP1 (ENSMMMG00000009649) #23	MRPL18 (ENSMMMG00000009635) #24	PNLDC1 (ENSMMMG00000009617) #25	ENSMMMG00000009610 #26	MAS1 (ENSMMMG00000009593) #26	IGF2R (ENSMMMG00000009520) #27	SLC22A1 (ENSMMMG00000009498) #29	SLC22A2 (ENSMMMG00000009474) #30	SLC22A3 (ENSMMMG00000009457) #31	ENSMMMG00000009428 #32	MAP3K4 (ENSMMMG00000009318) #33	AGPAT4 (ENSMMMG00000009306) #34	ENSMMMG00000009285	PRKN (ENSMMMG00000009240) #36	PACRG (ENSMMMG00000009213)
Eurasian red squirrel	MODERN SPECIES	16	SERAC1 (ENSSVLG00005017957) #8	ENSSVLG00005017883	GTF2H5 (ENSSVLG00005017847) #9	TULP4 (ENSSVLG00005017496) #10	TMEM181 (ENSSVLG00005017253) #12	DYNLT1 (ENSSVLG00005017209) #13	ENSSVLG00005017151	SYTL3 (ENSSVLG00005016826) #14	EZR (ENSSVLG00005016672) #15	RSPH3 (ENSSVLG00005016457) #16	TAGAP (ENSSVLG00005016286) #17	FNDC1 (ENSSVLG00005015913) #18	ENSSVLG00005015820	ENSSVLG00005015666 #20	ENSSVLG00005015534 #21	ACAT2 (ENSSVLG00005015487) #22	ENSSVLG00005015119 #23	ENSSVLG00005015024	MRPL18 (ENSSVLG00005014946) #24	ENSSVLG00005014568 #25	MAS1 (ENSSVLG00005014545) #26	ENSSVLG00005014490	IGF2R (ENSSVLG00005013999) #27	SLC22A1 (ENSSVLG00005013724) #29	SLC22A2 (ENSSVLG00005013453) #30	SLC22A3 (ENSSVLG00005013302) #31	ENSSVLG00005013240 #32	ENSSVLG00005013165 #32	ENSSVLG00005013042 #32	MAP3K4 (ENSSVLG00005011972) #33	AGPAT4 (ENSSVLG00005011803) #34
Hystricomorpha	ANCESTRAL SPECIES	53														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Naked mole-rat female	MODERN SPECIES		IL17A (ENSHGLG00000014659)	IL17F (ENSHGLG00000017633)	MCM3 (ENSHGLG00000016531)	PAQR8 (ENSHGLG00000010601)	EFHC1 (ENSHGLG00000009785)	ENSHGLG00000009261	ENSHGLG00000047464	ENSHGLG00000035426	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000043320	ENSHGLG00000007131	ENSHGLG00000048454	ENSHGLG00000016518 #20	WTAP (ENSHGLG00000007879) #21	ENSHGLG00000033037	ACAT2 (ENSHGLG00000006902) #22	ENSHGLG00000034564 #23	ENSHGLG00000004341	ENSHGLG00000003723	TCP1 (ENSHGLG00000007866) #23	ENSHGLG00000007214 #24	PNLDC1 (ENSHGLG00000006889) #25	ENSHGLG00000035250	MAS1 (ENSHGLG00000019988) #26	ENSHGLG00000039226	Igf2r (ENSHGLG00000003728) #27	SLC22A1 (ENSHGLG00000017500) #29	ENSHGLG00000014427	ENSHGLG00000017482 #30	ENSHGLG00000034005	ENSHGLG00000050994
Hystricomorpha_a	ANCESTRAL SPECIES	30														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Guinea pig	MODERN SPECIES	60													ENSCPOG00000040324	SOD2 (ENSCPOG00000036439) #20	WTAP (ENSCPOG00000001669) #21	ACAT2 (ENSCPOG00000001672) #22	TCP1 (ENSCPOG00000001676) #23	MRPL18 (ENSCPOG00000040103) #24	PNLDC1 (ENSCPOG00000019565) #25	MAS1 (ENSCPOG00000000027) #26	IGF2R (ENSCPOG00000013207) #27	SLC22A2 (ENSCPOG00000001527) #30	SLC22A3 (ENSCPOG00000010127) #31	ENSCPOG00000011605 #32	MAP3K4 (ENSCPOG00000013392) #33	AGPAT4 (ENSCPOG00000006135) #34	PRKN (ENSCPOG00000006136) #36	PACRG (ENSCPOG00000013410)	QKI (ENSCPOG00000003424)	C6orf118 (ENSCPOG00000008774)	PDE10A (ENSCPOG00000008783)
Hystricomorpha_b	ANCESTRAL SPECIES	29														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Long-tailed chinchilla	MODERN SPECIES	146														SOD2 (ENSCLAG00000010198) #20	WTAP (ENSCLAG00000009722) #21	ACAT2 (ENSCLAG00000009441) #22	ENSCLAG00000009354 #23	ENSCLAG00000012133	MRPL18 (ENSCLAG00000012045) #24	PNLDC1 (ENSCLAG00000003228) #25	MAS1 (ENSCLAG00000017515) #26	IGF2R (ENSCLAG00000002642) #27	SLC22A1 (ENSCLAG00000002646) #29	SLC22A2 (ENSCLAG00000002562) #30	SLC22A3 (ENSCLAG00000002492) #31	ENSCLAG00000002399 #32	MAP3K4 (ENSCLAG00000008769) #33	AGPAT4 (ENSCLAG00000008421) #34	PRKN (ENSCLAG00000008284) #36	PACRG (ENSCLAG00000008105)	ENSCLAG00000006238
Degu	MODERN SPECIES	153	FOXK2 (ENSODEG00000008321)	WDR45B (ENSODEG00000007809)	RAB40B (ENSODEG00000007441)	ENSODEG00000020021	FN3KRP (ENSODEG00000012467)	ENSODEG00000009328	ENSODEG00000019653	ZNF750 (ENSODEG00000008866)	TBCD (ENSODEG00000009094)	B3GNTL1 (ENSODEG00000011917)	METRNL (ENSODEG00000008002)	ENSODEG00000019438	SOD2 (ENSODEG00000007052) #20	ENSODEG00000019351	ENSODEG00000008023 ##21	ACAT2 (ENSODEG00000008431) #22	ENSODEG00000008372 #23	ENSODEG00000007990 #23	ENSODEG00000007318 #24	ENSODEG00000019385	PNLDC1 (ENSODEG00000008047) #25	ENSODEG00000019381	MAS1 (ENSODEG00000019418) #26	ENSODEG00000019599	IGF2R (ENSODEG00000007106) #27	ENSODEG00000019312	SLC22A1 (ENSODEG00000007862) #29	SLC22A2 (ENSODEG00000007315) #30	ENSODEG00000007010	ENSODEG00000006583	SLC22A3 (ENSODEG00000006460) #31
Lagomorpha	ANCESTRAL SPECIES	64	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00940000156543
Pika	MODERN SPECIES	1991															WTAP (ENSOPRG00000003737) #21	ACAT2 (ENSOPRG00000003753) #22	TCP1 (ENSOPRG00000003775) #23	MRPL18 (ENSOPRG00000003798) #24	PNLDC1 (ENSOPRG00000003813) #25
Rabbit	MODERN SPECIES	3	GTF2H5 (ENSOCUG00000025009) #9	ENSOCUG00000032034	TULP4 (ENSOCUG00000001444) #10	ENSOCUG00000026411	TMEM181 (ENSOCUG00000012985) #12	DYNLT1 (ENSOCUG00000013012) #13	SYTL3 (ENSOCUG00000003823) #14	EZR (ENSOCUG00000003829) #15	RSPH3 (ENSOCUG00000007210) #16	TAGAP (ENSOCUG00000000631) #17	ENSOCUG00000037278	FNDC1 (ENSOCUG00000015039) #18	ENSOCUG00000024780	WTAP (ENSOCUG00000035527) #21	TCP1 (ENSOCUG00000013847) #23	ACAT2 (ENSOCUG00000013836) #22	MRPL18 (ENSOCUG00000013858) #24	PNLDC1 (ENSOCUG00000013867) #25	MGRA (ENSOCUG00000001493) #26	IGF2R (ENSOCUG00000008785) #27	SLC22A1 (ENSOCUG00000002539) #29	SLC22A2 (ENSOCUG00000002542) #30	SLC22A3 (ENSOCUG00000004222) #31	ENSOCUG00000001766 #32	MAP3K4 (ENSOCUG00000017154) #33	ENSOCUG00000032142	ENSOCUG00000033664 #34	ENSOCUG00000035966 #36	ENSOCUG00000025750 #36	ENSOCUG00000031144	PACRG (ENSOCUG00000013289)
Primates	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.g.a #17	ENSGT00940000157993.h #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Mouse lemur	MODERN SPECIES	28	SNX9 (ENSMICG00000008656)	SYNJ2 (ENSMICG00000015804) #7	SERAC1 (ENSMICG00000015831) #8	GTF2H5 (ENSMICG00000046368) #9	TULP4 (ENSMICG00000009203) #10	TMEM181 (ENSMICG00000009469) #12	ENSMICG00000009483 #13	SYTL3 (ENSMICG00000009493) #14	ENSMICG00000009498 #15	RSPH3 (ENSMICG00000047073) #16	TAGAP (ENSMICG00000031485) #17	FNDC1 (ENSMICG00000010483) #18	SOD2 (ENSMICG00000035793) #20	WTAP (ENSMICG00000033919) #21	ENSMICG00000042830	ACAT2 (ENSMICG00000007988) #22	ENSMICG00000007998 #23	MRPL18 (ENSMICG00000044845) #24	PNLDC1 (ENSMICG00000008021) #25	IGF2R (ENSMICG00000007582) #27	SLC22A1 (ENSMICG00000007625) #29	SLC22A2 (ENSMICG00000007636) #30	SLC22A3 (ENSMICG00000007647) #31	ENSMICG00000034395 #32	MAP3K4 (ENSMICG00000007663) #33	AGPAT4 (ENSMICG00000009184) #34	PRKN (ENSMICG00000009200) #36	PACRG (ENSMICG00000009209)	QKI (ENSMICG00000009220)	C6orf118 (ENSMICG00000046277)	PDE10A (ENSMICG00000008121)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.g.a #17	ENSGT00940000157993.h #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Greater bamboo lemur	MODERN SPECIES	990				TULP4 (ENSPSMG00000019869) #10	ENSPSMG00000019843	TMEM181 (ENSPSMG00000019837) #12	DYNLT1 (ENSPSMG00000019821) #13	SYTL3 (ENSPSMG00000019808) #14	EZR (ENSPSMG00000019645) #15	RSPH3 (ENSPSMG00000019513) #16	ENSPSMG00000019495 #17	ENSPSMG00000019487 #17	FNDC1 (ENSPSMG00000019475) #18	SOD2 (ENSPSMG00000019437) #20	WTAP (ENSPSMG00000019381) #21	ACAT2 (ENSPSMG00000019357) #22	TCP1 (ENSPSMG00000019332) #23	MRPL18 (ENSPSMG00000019284) #24	PNLDC1 (ENSPSMG00000019276) #25	MAS1 (ENSPSMG00000019268) #26	ENSPSMG00000019267	IGF2R (ENSPSMG00000019256) #27	ENSPSMG00000019218 #30	ENSPSMG00000019203 #29	ENSPSMG00000019196 #29	SLC22A3 (ENSPSMG00000019195) #31	ENSPSMG00000019187 #32	ENSPSMG00000019164	MAP3K4 (ENSPSMG00000018873) #33	AGPAT4 (ENSPSMG00000018610) #34	ENSPSMG00000018587 #36
Coquerels sifaka	MODERN SPECIES	358	SNX9 (ENSPCOG00000027841)	SYNJ2 (ENSPCOG00000026910) #7	SERAC1 (ENSPCOG00000014108) #8	ENSPCOG00000027272 #9	TULP4 (ENSPCOG00000015899) #10	ENSPCOG00000028064	TMEM181 (ENSPCOG00000018974) #12	DYNLT1 (ENSPCOG00000015219) #13	SYTL3 (ENSPCOG00000016619) #14	EZR (ENSPCOG00000002371) #15	RSPH3 (ENSPCOG00000007389) #16	ENSPCOG00000019827 #17	FNDC1 (ENSPCOG00000003224) #18	SOD2 (ENSPCOG00000014692) #20	WTAP (ENSPCOG00000014167) #21	ACAT2 (ENSPCOG00000011643) #22	ENSPCOG00000017935 #23	MRPL18 (ENSPCOG00000025100) #24	PNLDC1 (ENSPCOG00000025722) #25	IGF2R (ENSPCOG00000018469) #27	SLC22A1 (ENSPCOG00000021330) #29	SLC22A2 (ENSPCOG00000023545) #30	SLC22A3 (ENSPCOG00000017815) #31	ENSPCOG00000026308 #32	MAP3K4 (ENSPCOG00000015288) #33	AGPAT4 (ENSPCOG00000013535) #34	PRKN (ENSPCOG00000019988) #36	PACRG (ENSPCOG00000013888)	QKI (ENSPCOG00000007664)	ENSPCOG00000022276
Bushbaby	MODERN SPECIES	171	SNX9 (ENSOGAG00000000487)	SYNJ2 (ENSOGAG00000000488) #7	SERAC1 (ENSOGAG00000000490) #8	GTF2H5 (ENSOGAG00000032151) #9	TULP4 (ENSOGAG00000000492) #10	TMEM181 (ENSOGAG00000000493) #12	DYNLT1 (ENSOGAG00000000494) #13	SYTL3 (ENSOGAG00000000495) #14	ENSOGAG00000000499 #15	RSPH3 (ENSOGAG00000033207) #16	ENSOGAG00000010321	TAGAP (ENSOGAG00000012767) #17	FNDC1 (ENSOGAG00000003812) #18	SOD2 (ENSOGAG00000017100) #20	ENSOGAG00000007311 #21	ACAT2 (ENSOGAG00000007315) #22	TCP1 (ENSOGAG00000007320) #23	MRPL18 (ENSOGAG00000007327) #24	PNLDC1 (ENSOGAG00000007331) #25	ENSOGAG00000031607 #26	ENSOGAG00000031154 #21	MAS1 (ENSOGAG00000005268) #26	IGF2R (ENSOGAG00000005270) #27	SLC22A1 (ENSOGAG00000005276) #29	ENSOGAG00000005280	SLC22A2 (ENSOGAG00000005281) #30	SLC22A3 (ENSOGAG00000004550) #31	ENSOGAG00000030352 #32	MAP3K4 (ENSOGAG00000004556) #33	AGPAT4 (ENSOGAG00000004567) #34	PRKN (ENSOGAG00000010979) #36
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Tarsier	MODERN SPECIES	7263														SOD2 (ENSTSYG00000000457) #20	WTAP (ENSTSYG00000001946) #21	ACAT2 (ENSTSYG00000003819) #22	TCP1 (ENSTSYG00000005513) #23	MRPL18 (ENSTSYG00000005598) #24	ENSTSYG00000030745	PNLDC1 (ENSTSYG00000005606) #25	IGF2R (ENSTSYG00000005881) #27
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208.p #32	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208.p #32	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208.p #32	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208.p #32	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Pan	ANCESTRAL SPECIES	5	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000017606.a.a.i.a.b.a.a	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208.p #32	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Chimpanzee	MODERN SPECIES	19	GTF2H5 (ENSPTRG00000051853) #9	ENSPTRG00000048100	TULP4 (ENSPTRG00000018743) #10	TMEM181 (ENSPTRG00000018745) #12	DYNLT1 (ENSPTRG00000018746) #13	SYTL3 (ENSPTRG00000018747) #14	EZR (ENSPTRG00000018748) #15	RSPH3 (ENSPTRG00000018751) #16	TAGAP (ENSPTRG00000018752) #17	FNDC1 (ENSPTRG00000018754) #18	ENSPTRG00000050636	ENSPTRG00000045605	SOD2 (ENSPTRG00000018757) #20	ENSPTRG00000046132	WTAP (ENSPTRG00000018758) #21	ACAT2 (ENSPTRG00000018759) #22	TCP1 (ENSPTRG00000018760) #23	MRPL18 (ENSPTRG00000018761) #24	PNLDC1 (ENSPTRG00000018762) #25	MAS1 (ENSPTRG00000018763) #26	IGF2R (ENSPTRG00000018764) #27	ENSPTRG00000051861	SLC22A1 (ENSPTRG00000018767) #29	SLC22A2 (ENSPTRG00000018768) #30	SLC22A3 (ENSPTRG00000018769) #31	LPA (ENSPTRG00000018770)	PLG (ENSPTRG00000018774) #32	MAP3K4 (ENSPTRG00000046415) #33	ENSPTRG00000048118	AGPAT4 (ENSPTRG00000018779) #34	PRKN (ENSPTRG00000018781) #36
Bonobo	MODERN SPECIES	19	ENSPPAG00000011428	TULP4 (ENSPPAG00000038644) #10	ENSPPAG00000008988	TMEM181 (ENSPPAG00000028271) #12	ENSPPAG00000042250 #13	SYTL3 (ENSPPAG00000043773) #14	EZR (ENSPPAG00000036860) #15	ENSPPAG00000000806	ENSPPAG00000013502 #16	TAGAP (ENSPPAG00000040185) #17	FNDC1 (ENSPPAG00000042837) #18	ENSPPAG00000024927	SOD2 (ENSPPAG00000038347) #20	ENSPPAG00000028640	WTAP (ENSPPAG00000028625) #21	ACAT2 (ENSPPAG00000043658) #22	TCP1 (ENSPPAG00000030713) #23	MRPL18 (ENSPPAG00000001652) #24	PNLDC1 (ENSPPAG00000026651) #25	MAS1 (ENSPPAG00000003542) #26	IGF2R (ENSPPAG00000022058) #27	ENSPPAG00000029247	SLC22A1 (ENSPPAG00000017979) #29	SLC22A2 (ENSPPAG00000012601) #30	SLC22A3 (ENSPPAG00000009760) #31	ENSPPAG00000026664 #32	ENSPPAG00000034032	PLG (ENSPPAG00000042434) #32	MAP3K4 (ENSPPAG00000037745) #33	ENSPPAG00000006234	AGPAT4 (ENSPPAG00000041903) #34
Human	MODERN SPECIES	18	ZDHHC14 (ENSG00000175048)	SNX9 (ENSG00000130340)	SYNJ2 (ENSG00000078269) #7	SERAC1 (ENSG00000122335) #8	GTF2H5 (ENSG00000272047) #9	TULP4 (ENSG00000130338) #10	TMEM181 (ENSG00000146433) #12	DYNLT1 (ENSG00000146425) #13	SYTL3 (ENSG00000164674) #14	EZR (ENSG00000092820) #15	RSPH3 (ENSG00000130363) #16	TAGAP (ENSG00000164691) #17	FNDC1 (ENSG00000164694) #18	SOD2 (ENSG00000291237) #20	WTAP (ENSG00000146457) #21	ACAT2 (ENSG00000120437) #22	TCP1 (ENSG00000120438) #23	MRPL18 (ENSG00000112110) #24	PNLDC1 (ENSG00000146453) #25	MAS1 (ENSG00000130368) #26	IGF2R (ENSG00000197081) #27	SLC22A1 (ENSG00000175003) #29	SLC22A2 (ENSG00000112499) #30	SLC22A3 (ENSG00000146477) #31	LPA (ENSG00000198670)	PLG (ENSG00000122194) #32	MAP3K4 (ENSG00000085511) #33	AGPAT4 (ENSG00000026652) #34	PRKN (ENSG00000185345) #36	PACRG (ENSG00000112530)	QKI (ENSG00000112531)
Gorilla	MODERN SPECIES	19	SNX9 (ENSGGOG00000003616)	SYNJ2 (ENSGGOG00000012210) #7	SERAC1 (ENSGGOG00000002450) #8	GTF2H5 (ENSGGOG00000025095) #9	TULP4 (ENSGGOG00000012077) #10	ENSGGOG00000042759	ENSGGOG00000000103 #12	DYNLT1 (ENSGGOG00000009979) #13	SYTL3 (ENSGGOG00000013290) #14	EZR (ENSGGOG00000013301) #15	ENSGGOG00000003870 #16	TAGAP (ENSGGOG00000004612) #17	FNDC1 (ENSGGOG00000014902) #18	SOD2 (ENSGGOG00000008212) #20	WTAP (ENSGGOG00000006039) #21	ACAT2 (ENSGGOG00000014051) #22	TCP1 (ENSGGOG00000014063) #23	MRPL18 (ENSGGOG00000014075) #24	PNLDC1 (ENSGGOG00000014077) #25	MAS1 (ENSGGOG00000010485) #26	IGF2R (ENSGGOG00000001658) #27	ENSGGOG00000022414	SLC22A1 (ENSGGOG00000001671) #29	SLC22A2 (ENSGGOG00000013636) #30	SLC22A3 (ENSGGOG00000001951) #31	LPA (ENSGGOG00000016065)	PLG (ENSGGOG00000010300) #32	MAP3K4 (ENSGGOG00000008360) #33	ENSGGOG00000023810	PRKN (ENSGGOG00000041961) #36	PACRG (ENSGGOG00000014095)
Orangutan	MODERN SPECIES	19	ENSPPYG00000035657	SYNJ2 (ENSPPYG00000017130) #7	SERAC1 (ENSPPYG00000017131) #8	GTF2H5 (ENSPPYG00000017132) #9	TULP4 (ENSPPYG00000017133) #10	ENSPPYG00000017134 #12	DYNLT1 (ENSPPYG00000033573) #13	SYTL3 (ENSPPYG00000017136) #14	EZR (ENSPPYG00000017137) #15	ENSPPYG00000017138	ENSPPYG00000017140 #16	TAGAP (ENSPPYG00000017141) #17	FNDC1 (ENSPPYG00000017142) #18	SOD2 (ENSPPYG00000034460) #20	WTAP (ENSPPYG00000017144) #21	ACAT2 (ENSPPYG00000017145) #22	TCP1 (ENSPPYG00000017146) #23	ENSPPYG00000017147 #24	PNLDC1 (ENSPPYG00000017148) #25	MAS1 (ENSPPYG00000017261) #26	IGF2R (ENSPPYG00000017149) #27	SLC22A1 (ENSPPYG00000017150) #29	SLC22A2 (ENSPPYG00000017151) #30	SLC22A3 (ENSPPYG00000017152) #31	ENSPPYG00000029841 #32	ENSPPYG00000039278	PLG (ENSPPYG00000017153) #32	MAP3K4 (ENSPPYG00000017155) #33	ENSPPYG00000038768	AGPAT4 (ENSPPYG00000017156) #34	PRKN (ENSPPYG00000017158) #36
Gibbon	MODERN SPECIES	18	SERAC1 (ENSNLEG00000010806) #8	GTF2H5 (ENSNLEG00000033388) #9	ENSNLEG00000010844	TULP4 (ENSNLEG00000010847) #10	ENSNLEG00000034975	ENSNLEG00000010915 #12	DYNLT1 (ENSNLEG00000010926) #13	SYTL3 (ENSNLEG00000010927) #14	EZR (ENSNLEG00000010950) #15	ENSNLEG00000027909	ENSNLEG00000010982 #16	TAGAP (ENSNLEG00000010995) #17	FNDC1 (ENSNLEG00000011059) #18	SOD2 (ENSNLEG00000011061) #20	WTAP (ENSNLEG00000028233) #21	ACAT2 (ENSNLEG00000011115) #22	TCP1 (ENSNLEG00000011178) #23	MRPL18 (ENSNLEG00000011269) #24	PNLDC1 (ENSNLEG00000011282) #25	IGF2R (ENSNLEG00000011313) #27	ENSNLEG00000035869	ENSNLEG00000035654 #29	SLC22A2 (ENSNLEG00000011367) #30	ENSNLEG00000011373 #31	ENSNLEG00000011380 #32	MAP3K4 (ENSNLEG00000011428) #33	ENSNLEG00000011464 #34	PRKN (ENSNLEG00000011473) #36	PACRG (ENSNLEG00000011474)	ENSNLEG00000011478	C6orf118 (ENSNLEG00000011493)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT00910000147813	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Rhinopithecus	ANCESTRAL SPECIES	446														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31
Golden snub-nosed monkey	MODERN SPECIES	1391														SOD2 (ENSRROG00000028133) #20	WTAP (ENSRROG00000028905) #21	ENSRROG00000030788 #22	ENSRROG00000045492 #23	MRPL18 (ENSRROG00000030298) #24	PNLDC1 (ENSRROG00000043919) #25	MAS1 (ENSRROG00000026378) #26	ENSRROG00000026110	IGF2R (ENSRROG00000036542) #27	SLC22A1 (ENSRROG00000034563) #29	SLC22A2 (ENSRROG00000038341) #30	SLC22A3 (ENSRROG00000035773) #31
Black snub-nosed monkey	MODERN SPECIES	1642													ENSRBIG00000036754	SOD2 (ENSRBIG00000038398) #20	WTAP (ENSRBIG00000028069) #21	ENSRBIG00000038582 #22	ENSRBIG00000038225 #23	ENSRBIG00000038575 #24	PNLDC1 (ENSRBIG00000033806) #25	MAS1 (ENSRBIG00000021000) #26	ENSRBIG00000019925	IGF2R (ENSRBIG00000041184) #27	SLC22A1 (ENSRBIG00000036475) #29	SLC22A2 (ENSRBIG00000031107) #30	SLC22A3 (ENSRBIG00000033139) #31
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000155616.c.a.f	ENSGT00940000154531.y.a #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #32	ENSGT00940000157183.a.a.b	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00950000182895.a.a.a.a.b.k	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.ab #21	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #34
Olive baboon	MODERN SPECIES	16	AFG1L (ENSPANG00000007612)	SNX3 (ENSPANG00000045017)	ENSPANG00000017995	NR2E1 (ENSPANG00000016092)	OSTM1 (ENSPANG00000024443)	ENSPANG00000004075	ENSPANG00000044542	RSPH3 (ENSPANG00000015890) #16	TAGAP (ENSPANG00000006087) #17	ENSPANG00000043396	FNDC1 (ENSPANG00000024066) #18	ENSPANG00000046898	ENSPANG00000043348	SOD2 (ENSPANG00000006178) #20	WTAP (ENSPANG00000018386) #21	ACAT2 (ENSPANG00000006086) #22	ENSPANG00000011086 #23	MRPL18 (ENSPANG00000023667) #24	PNLDC1 (ENSPANG00000022009) #25	MAS1 (ENSPANG00000024549) #26	IGF2R (ENSPANG00000018547) #27	SLC22A1 (ENSPANG00000012323) #29	SLC22A2 (ENSPANG00000008238) #30	SLC22A3 (ENSPANG00000025907) #31	ENSPANG00000033663	ENSPANG00000048497	ENSPANG00000042063	ENSPANG00000038033	PLG (ENSPANG00000007072) #32	MAP3K4 (ENSPANG00000013261) #33	ENSPANG00000050992
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034.`c #36
Sooty mangabey	MODERN SPECIES	590	SESN1 (ENSCATG00000025577)	ARMC2 (ENSCATG00000039753)	ENSCATG00000039457	ENSCATG00000039123	AFG1L (ENSCATG00000009873)	SNX3 (ENSCATG00000029122)	NR2E1 (ENSCATG00000040877)	OSTM1 (ENSCATG00000039725)	ENSCATG00000038882	RSPH3 (ENSCATG00000037174) #16	TAGAP (ENSCATG00000031180) #17	FNDC1 (ENSCATG00000041959) #18	SOD2 (ENSCATG00000041741) #20	ENSCATG00000018577	ENSCATG00000032080 ##21	ENSCATG00000029973 #22	ENSCATG00000040449 #23	MRPL18 (ENSCATG00000039405) #24	PNLDC1 (ENSCATG00000033196) #25	MAS1 (ENSCATG00000018354) #26	ENSCATG00000031955	IGF2R (ENSCATG00000040245) #27	SLC22A1 (ENSCATG00000037974) #29	SLC22A2 (ENSCATG00000035775) #30	SLC22A3 (ENSCATG00000037522) #31	ENSCATG00000036874
Drill	MODERN SPECIES	546	ENSMLEG00000038718	CEP57L1 (ENSMLEG00000042256)	SESN1 (ENSMLEG00000023202)	ARMC2 (ENSMLEG00000028725)	ENSMLEG00000035215	AFG1L (ENSMLEG00000042976)	SNX3 (ENSMLEG00000009064)	NR2E1 (ENSMLEG00000042106)	OSTM1 (ENSMLEG00000042119)	ENSMLEG00000034288	RSPH3 (ENSMLEG00000040694) #16	TAGAP (ENSMLEG00000019766) #17	FNDC1 (ENSMLEG00000036645) #18	SOD2 (ENSMLEG00000031266) #20	ENSMLEG00000036194 #21	ACAT2 (ENSMLEG00000030278) #22	ENSMLEG00000010006 #23	MRPL18 (ENSMLEG00000009952) #24	PNLDC1 (ENSMLEG00000044059) #25	MAS1 (ENSMLEG00000021239) #26	IGF2R (ENSMLEG00000030426) #27	SLC22A1 (ENSMLEG00000042980) #29	SLC22A2 (ENSMLEG00000016886) #30	SLC22A3 (ENSMLEG00000038788) #31	ENSMLEG00000029985	ENSMLEG00000028757	PLG (ENSMLEG00000043200) #32	MAP3K4 (ENSMLEG00000043276) #33
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00910000148724	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394.i.a #24	ENSGT00940000153167.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
Pig-tailed macaque	MODERN SPECIES	186	ARMC2 (ENSMNEG00000037523)	ENSMNEG00000041536	ENSMNEG00000040158	AFG1L (ENSMNEG00000044043)	SNX3 (ENSMNEG00000027766)	NR2E1 (ENSMNEG00000034662)	OSTM1 (ENSMNEG00000036298)	ENSMNEG00000041823	RSPH3 (ENSMNEG00000038143) #16	TAGAP (ENSMNEG00000029744) #17	ENSMNEG00000021558	FNDC1 (ENSMNEG00000043137) #18	SOD2 (ENSMNEG00000031749) #20	ENSMNEG00000027147	ENSMNEG00000034307 #21	ENSMNEG00000032924 #22	ENSMNEG00000041282 #23	ENSMNEG00000045344 #24	PNLDC1 (ENSMNEG00000034271) #25	ENSMNEG00000029146	IGF2R (ENSMNEG00000033736) #27	SLC22A1 (ENSMNEG00000019486) #29	SLC22A2 (ENSMNEG00000034324) #30	SLC22A3 (ENSMNEG00000000785) #31	ENSMNEG00000034918
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00910000148724	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #23	ENSGT00390000006394.i.a #24	ENSGT00940000153167.A.a #25	ENSGT00390000006707.w.a.a.b	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00910000148333	ENSGT00940000155208 #32
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000060415	AFG1L (ENSMFAG00000041493)	ENSMFAG00000065667	SNX3 (ENSMFAG00000039300)	NR2E1 (ENSMFAG00000001910)	OSTM1 (ENSMFAG00000002698)	RSPH3 (ENSMFAG00000041726) #16	TAGAP (ENSMFAG00000032965) #17	ENSMFAG00000029234	FNDC1 (ENSMFAG00000000932) #18	ENSMFAG00000059093	SOD2 (ENSMFAG00000046278) #20	ENSMFAG00000053733	WTAP (ENSMFAG00000035453) #21	ENSMFAG00000052244	ENSMFAG00000035657 #22	ENSMFAG00000003456 #23	ENSMFAG00000043173 #24	ENSMFAG00000065624	PNLDC1 (ENSMFAG00000041296) #25	ENSMFAG00000051722	ENSMFAG00000062218	MAS1 (ENSMFAG00000004332) #26	IGF2R (ENSMFAG00000034342) #27	SLC22A1 (ENSMFAG00000033700) #29	SLC22A2 (ENSMFAG00000031849) #30	SLC22A3 (ENSMFAG00000002893) #31	ENSMFAG00000064690	ENSMFAG00000063217	ENSMFAG00000051812 #32	PLG (ENSMFAG00000050264) #32
Rhesus	MODERN SPECIES	14	FOXO3 (ENSMMUG00000020369)	AFG1L (ENSMMUG00000020367)	SNX3 (ENSMMUG00000020366)	NR2E1 (ENSMMUG00000023767)	OSTM1 (ENSMMUG00000022247)	ENSMMUG00000061610	ENSMMUG00000064227	ENSMMUG00000057516	RSPH3 (ENSMMUG00000020011) #16	TAGAP (ENSMMUG00000011994) #17	FNDC1 (ENSMMUG00000000500) #18	SOD2 (ENSMMUG00000050418) #20	ENSMMUG00000056261	ENSMMUG00000057544	WTAP (ENSMMUG00000012837) #21	ENSMMUG00000012843 #22	TCP1 (ENSMMUG00000012846) #23	MRPL18 (ENSMMUG00000063964) #24	ENSMMUG00000052876	PNLDC1 (ENSMMUG00000004181) #25	MAS1 (ENSMMUG00000016217) #26	IGF2R (ENSMMUG00000015658) #27	SLC22A1 (ENSMMUG00000015662) #29	SLC22A2 (ENSMMUG00000005715) #30	SLC22A3 (ENSMMUG00000005717) #31	ENSMMUG00000016201	PLG (ENSMMUG00000016945) #32	ENSMMUG00000057619	MAP3K4 (ENSMMUG00000006143) #33	AGPAT4 (ENSMMUG00000006147) #34	PRKN (ENSMMUG00000020410) #36
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Macaca	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Pig-tailed macaque	MODERN SPECIES	544	OPRPN (ENSMNEG00000028733)	ENSMNEG00000039328	ENSMNEG00000034690	CABS1 (ENSMNEG00000017822)	CSN3 (ENSMNEG00000031858)	FDCSP (ENSMNEG00000033009)	ODAM (ENSMNEG00000038668)	ENSMNEG00000037247	ENSMNEG00000042173	ENSMNEG00000022627	CSN2 (ENSMNEG00000029544)	CSN1S1 (ENSMNEG00000035277)	SULT1E1 (ENSMNEG00000033099)	SULT1B1 (ENSMNEG00000041803)	UGT2A1 (ENSMNEG00000034176)	ENSMNEG00000041656 #22	ENSMNEG00000038759	ENSMNEG00000044727	UGT2A3 (ENSMNEG00000038674)	ENSMNEG00000036455
Macaca_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Crab-eating macaque	MODERN SPECIES	15	MUC7 (ENSMFAG00000054048)	OPRPN (ENSMFAG00000034306)	ENSMFAG00000037153	CABS1 (ENSMFAG00000053305)	CSN3 (ENSMFAG00000032472)	FDCSP (ENSMFAG00000057683)	ODAM (ENSMFAG00000044753)	PRR27 (ENSMFAG00000045284)	ENSMFAG00000003233	ENSMFAG00000017051	ENSMFAG00000030084	CSN2 (ENSMFAG00000040612)	CSN1S1 (ENSMFAG00000034216)	SULT1E1 (ENSMFAG00000046267)	SULT1B1 (ENSMFAG00000042376)	ENSMFAG00000003287 #22	UGT2A1 (ENSMFAG00000001202)	ENSMFAG00000000958	ENSMFAG00000001869	UGT2B7 (ENSMFAG00000050937)	ENSMFAG00000056775	ENSMFAG00000049858	TMPRSS11E (ENSMFAG00000044534)	YTHDC1 (ENSMFAG00000031927)	TMPRSS11B (ENSMFAG00000025901)	TMPRSS11F (ENSMFAG00000001358)	TMPRSS11A (ENSMFAG00000039434)	TMPRSS11D (ENSMFAG00000035772)	GNRHR (ENSMFAG00000034593)	UBA6 (ENSMFAG00000001344)	STAP1 (ENSMFAG00000000570)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00730000111663	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b
Sooty mangabey	MODERN SPECIES	243	MUC7 (ENSCATG00000040053)	OPRPN (ENSCATG00000034709)	ENSCATG00000032484	SMR3A (ENSCATG00000029579)	CSN3 (ENSCATG00000027983)	FDCSP (ENSCATG00000036774)	ODAM (ENSCATG00000035630)	PRR27 (ENSCATG00000029123)	ENSCATG00000042470	ENSCATG00000040378	STATH (ENSCATG00000035840)	CSN2 (ENSCATG00000033009)	CSN1S1 (ENSCATG00000033444)	SULT1E1 (ENSCATG00000041914)	SULT1B1 (ENSCATG00000034869)	ENSCATG00000041603 #22	UGT2A1 (ENSCATG00000029410)	ENSCATG00000041561	ENSCATG00000032258	ENSCATG00000002647	UGT2A3 (ENSCATG00000038824)	ENSCATG00000003758
Vervet Monkey	MODERN SPECIES	4	SNX9 (ENSCSAG00000013174)	SYNJ2 (ENSCSAG00000013130) #7	SERAC1 (ENSCSAG00000013012) #8	GTF2H5 (ENSCSAG00000012998) #9	TULP4 (ENSCSAG00000012991) #10	TMEM181 (ENSCSAG00000012985) #12	ENSCSAG00000012959	DYNLT1 (ENSCSAG00000012907) #13	SYTL3 (ENSCSAG00000012865) #14	EZR (ENSCSAG00000012781) #15	RSPH3 (ENSCSAG00000012703) #16	TAGAP (ENSCSAG00000012667) #17	FNDC1 (ENSCSAG00000012645) #18	SOD2 (ENSCSAG00000012601) #20	WTAP (ENSCSAG00000012594) #21	ENSCSAG00000012584 #22	TCP1 (ENSCSAG00000012567) #23	MRPL18 (ENSCSAG00000012516) #24	PNLDC1 (ENSCSAG00000012478) #25	ENSCSAG00000012433 #26	MAS1 (ENSCSAG00000012417) #26	IGF2R (ENSCSAG00000012403) #27	SLC22A1 (ENSCSAG00000012377) #29	SLC22A2 (ENSCSAG00000012370) #30	SLC22A3 (ENSCSAG00000012348) #31	LPA (ENSCSAG00000012297)	PLG (ENSCSAG00000012290) #32	MAP3K4 (ENSCSAG00000012282) #33	AGPAT4 (ENSCSAG00000012273) #34	ENSCSAG00000018983	PRKN (ENSCSAG00000012267) #36
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00730000111944	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00730000111944	ENSGT00970000194128	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Vervet Monkey	MODERN SPECIES	26	AMBN (ENSCSAG00000004873)	MUC7 (ENSCSAG00000004879)	OPRPN (ENSCSAG00000004881)	ENSCSAG00000004882	ENSCSAG00000004883	CABS1 (ENSCSAG00000000421)	CSN3 (ENSCSAG00000004887)	FDCSP (ENSCSAG00000004899)	ODAM (ENSCSAG00000004908)	PRR27 (ENSCSAG00000004913)	ENSCSAG00000004916	CSN2 (ENSCSAG00000004921)	CSN1S1 (ENSCSAG00000004930)	SULT1E1 (ENSCSAG00000004937)	SULT1B1 (ENSCSAG00000004940)	ENSCSAG00000000422 #22	UGT2A1 (ENSCSAG00000004944)	UGT2B4 (ENSCSAG00000004947)	DCUN1D4 (ENSCSAG00000004948)	LRRC66 (ENSCSAG00000004952)	SGCB (ENSCSAG00000004955)	SPATA18 (ENSCSAG00000004960)	USP46 (ENSCSAG00000004963)	ERVMER34-1 (ENSCSAG00000000423)	RASL11B (ENSCSAG00000004968)	SCFD2 (ENSCSAG00000004970)	ENSCSAG00000004975	LNX1 (ENSCSAG00000004979)	GSX2 (ENSCSAG00000004981)	PDGFRA (ENSCSAG00000004987)	KIT (ENSCSAG00000004992)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a
Macaca	ANCESTRAL SPECIES	26	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00530000063841.a
Rhesus	MODERN SPECIES	15	ENSMMUG00000061054	OPRPN (ENSMMUG00000002465)	ENSMMUG00000054206	SMR3A (ENSMMUG00000047859)	CABS1 (ENSMMUG00000006708)	ENSMMUG00000039866	CSN3 (ENSMMUG00000006031)	FDCSP (ENSMMUG00000062248)	ODAM (ENSMMUG00000006029)	PRR27 (ENSMMUG00000022269)	ENSMMUG00000048868	CSN2 (ENSMMUG00000004849)	CSN1S1 (ENSMMUG00000047324)	SULT1E1 (ENSMMUG00000004667)	SULT1B1 (ENSMMUG00000062115)	ENSMMUG00000030261 #22	UGT2A1 (ENSMMUG00000004183)	ENSMMUG00000000337	ENSMMUG00000014773	UGT2A3 (ENSMMUG00000047053)	UGT2B7 (ENSMMUG00000012355)	TMPRSS11E (ENSMMUG00000011103)	YTHDC1 (ENSMMUG00000002265)	TMPRSS11B (ENSMMUG00000060914)	TMPRSS11F (ENSMMUG00000020312)	TMPRSS11A (ENSMMUG00000000552)	TMPRSS11D (ENSMMUG00000050011)	GNRHR (ENSMMUG00000003779)	UBA6 (ENSMMUG00000003776)	STAP1 (ENSMMUG00000009392)	CENPC (ENSMMUG00000009390)
Rhinopithecus	ANCESTRAL SPECIES	409									ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000165281	ENSGT00940000158332.a.b.c	ENSGT00940000162432
Golden snub-nosed monkey	MODERN SPECIES	1600									ENSRROG00000041864	ENSRROG00000039124	STATH (ENSRROG00000036329)	CSN2 (ENSRROG00000039742)	CSN1S1 (ENSRROG00000037818)	SULT1E1 (ENSRROG00000045146)	SULT1B1 (ENSRROG00000031828)	ENSRROG00000045770 #22	UGT2A1 (ENSRROG00000040776)	ENSRROG00000032012
Black snub-nosed monkey	MODERN SPECIES	743																ENSRBIG00000034226 #22	UGT2A1 (ENSRBIG00000043750)	ENSRBIG00000032766	ENSRBIG00000022354	ENSRBIG00000017711	UGT2A3 (ENSRBIG00000034168)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.c.a	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.x.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.c.a	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.x.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00390000013264.c.a	ENSGT00940000155913 #10	ENSGT00910000147301	ENSGT00390000007183 #12	ENSGT00940000154531.x.b #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Capuchin	MODERN SPECIES	6	GTF2H5 (ENSCCAG00000030667) #9	ENSCCAG00000031330	TULP4 (ENSCCAG00000028211) #10	ENSCCAG00000013481	TMEM181 (ENSCCAG00000022105) #12	DYNLT1 (ENSCCAG00000035503) #13	ENSCCAG00000007021	SYTL3 (ENSCCAG00000034836) #14	EZR (ENSCCAG00000029069) #15	ENSCCAG00000029457	RSPH3 (ENSCCAG00000035584) #16	TAGAP (ENSCCAG00000036010) #17	FNDC1 (ENSCCAG00000021952) #18	SOD2 (ENSCCAG00000025254) #20	WTAP (ENSCCAG00000021303) #21	ACAT2 (ENSCCAG00000034076) #22	TCP1 (ENSCCAG00000028316) #23	MRPL18 (ENSCCAG00000027672) #24	PNLDC1 (ENSCCAG00000026232) #25	MAS1 (ENSCCAG00000012059) #26	IGF2R (ENSCCAG00000010739) #27	SLC22A1 (ENSCCAG00000030320) #29	SLC22A2 (ENSCCAG00000020700) #30	SLC22A3 (ENSCCAG00000035674) #31	PLG (ENSCCAG00000034420) #32	MAP3K4 (ENSCCAG00000028977) #33	AGPAT4 (ENSCCAG00000022357) #34	PRKN (ENSCCAG00000024514) #36	PACRG (ENSCCAG00000034067)	QKI (ENSCCAG00000025230)
Bolivian squirrel monkey	MODERN SPECIES	101	SNX9 (ENSSBOG00000025360)	SYNJ2 (ENSSBOG00000034876) #7	SERAC1 (ENSSBOG00000027520) #8	ENSSBOG00000028859 #9	ENSSBOG00000035325	TULP4 (ENSSBOG00000032404) #10	TMEM181 (ENSSBOG00000025017) #12	ENSSBOG00000025349 #13	SYTL3 (ENSSBOG00000017382) #14	EZR (ENSSBOG00000025519) #15	RSPH3 (ENSSBOG00000019792) #16	TAGAP (ENSSBOG00000030452) #17	FNDC1 (ENSSBOG00000027676) #18	ENSSBOG00000033881 #20	ENSSBOG00000017833 #21	ACAT2 (ENSSBOG00000035773) #22	TCP1 (ENSSBOG00000022736) #23	MRPL18 (ENSSBOG00000017384) #24	PNLDC1 (ENSSBOG00000019135) #25	MAS1 (ENSSBOG00000019912) #26	IGF2R (ENSSBOG00000024078) #27	SLC22A1 (ENSSBOG00000029054) #29	SLC22A2 (ENSSBOG00000035664) #30	SLC22A3 (ENSSBOG00000024841) #31	PLG (ENSSBOG00000033802) #32	MAP3K4 (ENSSBOG00000022969) #33	AGPAT4 (ENSSBOG00000023179) #34	PRKN (ENSSBOG00000019735) #36	PACRG (ENSSBOG00000036098)	QKI (ENSSBOG00000036267)	C6orf118 (ENSSBOG00000024744)
Marmoset	MODERN SPECIES	16	ENSCJAG00000070434	TULP4 (ENSCJAG00000003653) #10	ENSCJAG00000059699	TMEM181 (ENSCJAG00000047353) #12	ENSCJAG00000072282	DYNLT1 (ENSCJAG00000077634) #13	SYTL3 (ENSCJAG00000003730) #14	EZR (ENSCJAG00000003763) #15	ENSCJAG00000047099	ENSCJAG00000071144	RSPH3 (ENSCJAG00000011581) #16	TAGAP (ENSCJAG00000011616) #17	FNDC1 (ENSCJAG00000011622) #18	SOD2 (ENSCJAG00000011664) #20	WTAP (ENSCJAG00000011722) #21	ACAT2 (ENSCJAG00000011777) #22	TCP1 (ENSCJAG00000011792) #23	MRPL18 (ENSCJAG00000011859) #24	PNLDC1 (ENSCJAG00000011865) #25	ENSCJAG00000081097	IGF2R (ENSCJAG00000011908) #27	SLC22A2 (ENSCJAG00000012056) #30	SLC22A3 (ENSCJAG00000012093) #31	PLG (ENSCJAG00000012132) #32	ENSCJAG00000084439	MAP3K4 (ENSCJAG00000012176) #33	AGPAT4 (ENSCJAG00000012323) #34	PRKN (ENSCJAG00000012355) #36	PACRG (ENSCJAG00000012365)	QKI (ENSCJAG00000012368)	ENSCJAG00000077202
Mas night monkey	MODERN SPECIES	265	SERAC1 (ENSANAG00000032062) #8	GTF2H5 (ENSANAG00000029980) #9	ENSANAG00000033750	TULP4 (ENSANAG00000032456) #10	TMEM181 (ENSANAG00000021664) #12	ENSANAG00000016873 #13	SYTL3 (ENSANAG00000021648) #14	EZR (ENSANAG00000022176) #15	ENSANAG00000028817	ENSANAG00000033290	RSPH3 (ENSANAG00000021629) #16	TAGAP (ENSANAG00000023564) #17	FNDC1 (ENSANAG00000028811) #18	SOD2 (ENSANAG00000024525) #20	WTAP (ENSANAG00000027064) #21	ACAT2 (ENSANAG00000030553) #22	TCP1 (ENSANAG00000033987) #23	MRPL18 (ENSANAG00000033398) #24	PNLDC1 (ENSANAG00000034713) #25	MAS1 (ENSANAG00000019902) #26	IGF2R (ENSANAG00000031865) #27	SLC22A1 (ENSANAG00000038334) #29	SLC22A2 (ENSANAG00000030328) #30	SLC22A3 (ENSANAG00000030361) #31	PLG (ENSANAG00000030380) #32	MAP3K4 (ENSANAG00000030551) #33	AGPAT4 (ENSANAG00000037521) #34	PRKN (ENSANAG00000032287) #36	ENSANAG00000019305	PACRG (ENSANAG00000020727)	QKI (ENSANAG00000029669)
Atlantogenata	ANCESTRAL SPECIES	96	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330	ENSGT00940000155310.b
Afrotheria	ANCESTRAL SPECIES	113	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00940000168329	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Tenrec	MODERN SPECIES	2026																ACAT2 (ENSETEG00000015643) #22	TCP1 (ENSETEG00000015644) #23
Afrotheria_a	ANCESTRAL SPECIES	116	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00940000168329	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Elephant	MODERN SPECIES	520	SNX9 (ENSLAFG00000014044)	SYNJ2 (ENSLAFG00000011979) #7	SERAC1 (ENSLAFG00000000802) #8	GTF2H5 (ENSLAFG00000000806) #9	TULP4 (ENSLAFG00000002476) #10	TMEM181 (ENSLAFG00000007610) #12	DYNLT1 (ENSLAFG00000007620) #13	SYTL3 (ENSLAFG00000009320) #14	EZR (ENSLAFG00000009321) #15	ENSLAFG00000029097	RSPH3 (ENSLAFG00000007976) #16	TAGAP (ENSLAFG00000026460) #17	ENSLAFG00000022877 #18	SOD2 (ENSLAFG00000007331) #20	WTAP (ENSLAFG00000007335) #21	ACAT2 (ENSLAFG00000007904) #22	TCP1 (ENSLAFG00000007909) #23	MRPL18 (ENSLAFG00000002501) #24	PNLDC1 (ENSLAFG00000030189) #25	MAS1 (ENSLAFG00000001539) #26	IGF2R (ENSLAFG00000017191) #27	SLC22A1 (ENSLAFG00000011681) #29	SLC22A2 (ENSLAFG00000011288) #30	SLC22A3 (ENSLAFG00000005825) #31	ENSLAFG00000004237 #32	MAP3K4 (ENSLAFG00000012768) #33	AGPAT4 (ENSLAFG00000021414) #34	ENSLAFG00000031170	ENSLAFG00000003358	PACRG (ENSLAFG00000002732)	QKI (ENSLAFG00000021654)
Hyrax	MODERN SPECIES	1632																ACAT2 (ENSPCAG00000013997) #22	TCP1 (ENSPCAG00000014055) #23	MRPL18 (ENSPCAG00000014116) #24	PNLDC1 (ENSPCAG00000014169) #25
Xenarthra	ANCESTRAL SPECIES	1799																ENSGT01030000234626.B #22	ENSGT00550000074878 #23
Sloth	MODERN SPECIES	1821																ACAT2 (ENSCHOG00000002079) #22	TCP1 (ENSCHOG00000002085) #23
Armadillo	MODERN SPECIES	1979																ACAT2 (ENSDNOG00000002502) #22	TCP1 (ENSDNOG00000025965) #23
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.f #17	ENSGT00940000157993.e.b #17	ENSGT00940000157993.e.a #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.`b.a.a.b #26	ENSGT01030000234639.A.a.`b.a.b #26	ENSGT01030000234639.A.a.ab #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993.f #17	ENSGT00940000157993.e.b #17	ENSGT00940000157993.e.a #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.`b.a.a.b #26	ENSGT01030000234639.A.a.`b.a.b #26	ENSGT01030000234639.A.a.ab #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.bb #16	ENSGT00940000157993.f #17	ENSGT00390000003197.h.b	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.`b.a.a.b #26	ENSGT01030000234639.A.a.ab #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330
Diprotodontia_a	ANCESTRAL SPECIES	43	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.bb #16	ENSGT00940000157993.f #17	ENSGT00390000003197.h.b	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.`b.a.a.b #26	ENSGT01030000234639.A.a.ab #26	ENSGT00390000013943 #27	ENSGT00940000162065 #29	ENSGT00940000155089 #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1190	ENSVURG00010018802 #7	ENSVURG00010018829 #8	ENSVURG00010018845 #9	ENSVURG00010018851 #10	ENSVURG00010018882 #12	ENSVURG00010018934 #13	ENSVURG00010018937 #14	ENSVURG00010018940 #15	ENSVURG00010018948 #16	ENSVURG00010018954 #17	ENSVURG00010018957	ENSVURG00010018964 #18	ENSVURG00010018999	ENSVURG00010019003 #20	ENSVURG00010019008 ##21	ENSVURG00010019015 #22	ENSVURG00010019020 #23	ENSVURG00010019031 #24	ENSVURG00010019037 #25	ENSVURG00010019052 #26	ENSVURG00010019059 #26	ENSVURG00010019063 #26	ENSVURG00010019080 #27	ENSVURG00010019132 #29	ENSVURG00010019143 #30	ENSVURG00010019160 #31	ENSVURG00010019170 #32	ENSVURG00010019181 #33	ENSVURG00010019211 #34	ENSVURG00010019215	ENSVURG00010019218 #36
Common wonbat	MODERN SPECIES	1190	ENSVURG00010017617 #7	ENSVURG00010017645 #8	ENSVURG00010017655 #9	ENSVURG00010017662 #10	ENSVURG00010017697 #12	ENSVURG00010017869 #13	ENSVURG00010017878 #14	ENSVURG00010017888 #15	ENSVURG00010017899 #16	ENSVURG00010017907 #17	ENSVURG00010017914	ENSVURG00010017926 #18	ENSVURG00010017959	ENSVURG00010017970 #20	ENSVURG00010017990 ##21	ENSVURG00010018030 #22	ENSVURG00010018037 #23	ENSVURG00010018050 #24	ENSVURG00010018062 #25	ENSVURG00010018079 #26	ENSVURG00010018086 #26	ENSVURG00010018091 #26	ENSVURG00010018103 #27	ENSVURG00010018143 #29	ENSVURG00010018160 #30	ENSVURG00010018225 #31	ENSVURG00010018231 #31	ENSVURG00010018243 #32	ENSVURG00010018264 #33	ENSVURG00010018293 #34	ENSVURG00010018305
koala	MODERN SPECIES	25	ENSPCIG00000031472	SYNJ2 (ENSPCIG00000010179) #7	SERAC1 (ENSPCIG00000010190) #8	GTF2H5 (ENSPCIG00000036390) #9	TULP4 (ENSPCIG00000010196) #10	TMEM181 (ENSPCIG00000010199) #12	DYNLT1 (ENSPCIG00000010540) #13	ENSPCIG00000010547 #14	EZR (ENSPCIG00000010897) #15	ENSPCIG00000010878 #16	TAGAP (ENSPCIG00000010877) #17	ENSPCIG00000010874	FNDC1 (ENSPCIG00000029395) #18	SOD2 (ENSPCIG00000029402) #20	ENSPCIG00000029403 ##21	ACAT2 (ENSPCIG00000029405) #22	TCP1 (ENSPCIG00000029421) #23	MRPL18 (ENSPCIG00000003362) #24	PNLDC1 (ENSPCIG00000023412) #25	ENSPCIG00000007796 #26	MAS1 (ENSPCIG00000019932) #26	IGF2R (ENSPCIG00000019709) #27	SLC22A1 (ENSPCIG00000019702) #29	SLC22A2 (ENSPCIG00000004270) #30	SLC22A3 (ENSPCIG00000019698) #31	ENSPCIG00000019697 #32	MAP3K4 (ENSPCIG00000019688) #33	AGPAT4 (ENSPCIG00000019684) #34	ENSPCIG00000019683 #36	ENSPCIG00000022936 #36	ENSPCIG00000006520
Wallaby	MODERN SPECIES	2087																ACAT2 (ENSMEUG00000005954) #22	TCP1 (ENSMEUG00000005970) #23
Tasmanian devil	MODERN SPECIES	3	SNX9 (ENSSHAG00000018842)	SYNJ2 (ENSSHAG00000018881) #7	SERAC1 (ENSSHAG00000018902) #8	GTF2H5 (ENSSHAG00000023356) #9	TULP4 (ENSSHAG00000006707) #10	TMEM181 (ENSSHAG00000007483) #12	DYNLT1 (ENSSHAG00000008180) #13	ENSSHAG00000028670	EZR (ENSSHAG00000009483) #15	RSPH3 (ENSSHAG00000010979) #16	ENSSHAG00000011390 #17	ENSSHAG00000028141 #17	FNDC1 (ENSSHAG00000012329) #18	SOD2 (ENSSHAG00000025065) #20	ENSSHAG00000027733 ##21	ACAT2 (ENSSHAG00000024864) #22	MRPL18 (ENSSHAG00000029305) #24	TCP1 (ENSSHAG00000002185) #23	PNLDC1 (ENSSHAG00000015192) #25	ENSSHAG00000031794 #26	ENSSHAG00000026410 #26	ENSSHAG00000022705 #26	MAS1 (ENSSHAG00000001441) #26	IGF2R (ENSSHAG00000015828) #27	SLC22A1 (ENSSHAG00000016135) #29	SLC22A2 (ENSSHAG00000016344) #30	SLC22A3 (ENSSHAG00000016633) #31	ENSSHAG00000000112 #32	ENSSHAG00000021967	ENSSHAG00000004375 #33	ENSSHAG00000025577 #36
Opossum	MODERN SPECIES	1	SYNJ2 (ENSMODG00000007783) #7	SERAC1 (ENSMODG00000007736) #8	GTF2H5 (ENSMODG00000007676) #9	TULP4 (ENSMODG00000007674) #10	TMEM181 (ENSMODG00000007661) #12	ENSMODG00000007647 #14	EZR (ENSMODG00000007642) #15	RSPH3 (ENSMODG00000007617) #16	ENSMODG00000043392 #17	ENSMODG00000007592 #17	ENSMODG00000023276	FNDC1 (ENSMODG00000007540) #18	ENSMODG00000043641	SOD2 (ENSMODG00000007521) #20	ENSMODG00000045208 ##21	ACAT2 (ENSMODG00000007156) #22	TCP1 (ENSMODG00000007478) #23	MRPL18 (ENSMODG00000007428) #24	PNLDC1 (ENSMODG00000007420) #25	ENSMODG00000007388 #26	ENSMODG00000023275 #26	MAS1 (ENSMODG00000007377) #26	ENSMODG00000048306	IGF2R (ENSMODG00000007100) #27	SLC22A1 (ENSMODG00000006918) #29	SLC22A2 (ENSMODG00000006806) #30	SLC22A3 (ENSMODG00000006771) #31	ENSMODG00000006692 #32	MAP3K4 (ENSMODG00000006594) #33	AGPAT4 (ENSMODG00000006531) #34	ENSMODG00000027665 #36
Platypus	MODERN SPECIES	11	ENSOANG00000041492	ENSOANG00000014619	ENSOANG00000038578	RGS17 (ENSOANG00000042607)	MTRF1L (ENSOANG00000037135)	FBXO5 (ENSOANG00000005309)	VIP (ENSOANG00000003593)	MYCT1 (ENSOANG00000042329)	ENSOANG00000046889 #36	ENSOANG00000047227 #36	ENSOANG00000041148 #37	ENSOANG00000011163	QKI (ENSOANG00000011161)	SOD2 (ENSOANG00000000632) #20	WTAP (ENSOANG00000038325) #21	ACAT2 (ENSOANG00000048813) #22	ENSOANG00000038861 #24	PNLDC1 (ENSOANG00000012199) #25	TCP1 (ENSOANG00000012198) #23	MAS1 (ENSOANG00000012996) #26	IGF2R (ENSOANG00000007296) #27	SLC22A2 (ENSOANG00000007295) #30	SLC22A3 (ENSOANG00000040412) #31	ENSOANG00000009543 #32	MAP3K4 (ENSOANG00000002832) #33	ENSOANG00000045573	CIAO3 (ENSOANG00000045666)	ENSOANG00000030491	ANTKMT (ENSOANG00000037019)	METRN (ENSOANG00000037561)	ENSOANG00000012967
Sauria	ANCESTRAL SPECIES	1	ENSGT01030000235099	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00950000186343 #37	ENSGT00940000157330
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.b #26	ENSGT01030000234639.A.a.c.b #26	ENSGT01030000234639.A.a.d #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.vb #13	ENSGT00940000160610.e #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.a #26	ENSGT01030000234639.A.a.c.b #26	ENSGT01030000234639.A.a.d #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.r #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.vb #13	ENSGT00940000160610.e #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.b #26	ENSGT01030000234639.A.a.c.a.a #26	ENSGT01030000234639.A.a.c.b #26	ENSGT01030000234639.A.a.d #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.r #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531.vb #13	ENSGT00940000160610.e #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.b #26	ENSGT01030000234639.A.a.c.a.a #26	ENSGT01030000234639.A.a.c.b #26	ENSGT01030000234639.A.a.d #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.r #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34
Mainland tiger snake	MODERN SPECIES	70	SNX9 (ENSNSUG00000015876)	SYNJ2 (ENSNSUG00000015875) #7	SERAC1 (ENSNSUG00000015847) #8	GTF2H5 (ENSNSUG00000015844) #9	TULP4 (ENSNSUG00000015843) #10	ENSNSUG00000015840 #12	DYNLT1 (ENSNSUG00000015838) #13	ENSNSUG00000015836 #14	EZR (ENSNSUG00000015742) #15	RSPH3 (ENSNSUG00000015741) #16	FNDC1 (ENSNSUG00000015734) #18	ENSNSUG00000015731	ENSNSUG00000015730	SOD2 (ENSNSUG00000015729) #20	WTAP (ENSNSUG00000015728) #21	ACAT2 (ENSNSUG00000015727) #22	TCP1 (ENSNSUG00000015723) #23	MRPL18 (ENSNSUG00000015722) #24	ENSNSUG00000015720 #25	ENSNSUG00000015719 #26	ENSNSUG00000015718 #26	ENSNSUG00000015717 #26	IGF2R (ENSNSUG00000015715) #27	ENSNSUG00000015713 #30	ENSNSUG00000015712 #30	SLC22A3 (ENSNSUG00000015711) #31	ENSNSUG00000015529 #32	ENSNSUG00000015519	MAP3K4 (ENSNSUG00000015033) #33	AGPAT4 (ENSNSUG00000015028) #34	ENSNSUG00000015027
Eastern brown snake	MODERN SPECIES	26	SYNJ2 (ENSPTXG00000000127) #7	SERAC1 (ENSPTXG00000000188) #8	GTF2H5 (ENSPTXG00000000737) #9	TULP4 (ENSPTXG00000000740) #10	TMEM181 (ENSPTXG00000000759) #12	DYNLT1 (ENSPTXG00000001355) #13	ENSPTXG00000001360 #14	EZR (ENSPTXG00000001372) #15	ENSPTXG00000001383 #16	TAGAP (ENSPTXG00000001396) #17	FNDC1 (ENSPTXG00000001403) #18	ENSPTXG00000001491	SOD2 (ENSPTXG00000001492) #20	WTAP (ENSPTXG00000001493) #21	TCP1 (ENSPTXG00000001496) #23	ACAT2 (ENSPTXG00000001498) #22	MRPL18 (ENSPTXG00000001509) #24	PNLDC1 (ENSPTXG00000001515) #25	ENSPTXG00000001522 #26	ENSPTXG00000001525 #26	ENSPTXG00000001528 #26	IGF2R (ENSPTXG00000001694) #27	ENSPTXG00000007955 #30	ENSPTXG00000007957 #30	SLC22A3 (ENSPTXG00000007958) #31	ENSPTXG00000007960 #32	MAP3K4 (ENSPTXG00000007968) #33	ENSPTXG00000008478	AGPAT4 (ENSPTXG00000008479) #34	PRKN (ENSPTXG00000008480) #36	ENSPTXG00000008481 #37
Blue-lipped sea krait	MODERN SPECIES	6198																ACAT2 (ENSLLTG00000018419) #22	TCP1 (ENSLLTG00000018420) #23	MRPL18 (ENSLLTG00000018423) #24
Indian cobra	MODERN SPECIES		SERAC1 (ENSNNAG00000000024) #8	GTF2H5 (ENSNNAG00000000020) #9	TULP4 (ENSNNAG00000000017) #10	TMEM181 (ENSNNAG00000000013) #12	ENSNNAG00000000010 #13	ENSNNAG00000000008 #14	ENSNNAG00000000005	ENSNNAG00000014627 #14	EZR (ENSNNAG00000014514) #15	RSPH3 (ENSNNAG00000014424) #16	TAGAP (ENSNNAG00000014407) #17	FNDC1 (ENSNNAG00000014369) #18	ENSNNAG00000014347	SOD2 (ENSNNAG00000014338) #20	WTAP (ENSNNAG00000014291) #21	ACAT2 (ENSNNAG00000014276) #22	TCP1 (ENSNNAG00000014238) #23	MRPL18 (ENSNNAG00000014226) #24	PNLDC1 (ENSNNAG00000014137) #25	ENSNNAG00000014119 #26	ENSNNAG00000014108 #26	IGF2R (ENSNNAG00000013937) #27	ENSNNAG00000013902 #30	ENSNNAG00000013839 #30	SLC22A3 (ENSNNAG00000013742) #31	ENSNNAG00000013719 #32	ENSNNAG00000013701 #32	ENSNNAG00000013630 #32	ENSNNAG00000013607	MAP3K4 (ENSNNAG00000013454) #33	AGPAT4 (ENSNNAG00000013435) #34
Lizard	MODERN SPECIES		ENSACAG00000039211	SERAC1 (ENSACAG00000004912) #8	GTF2H5 (ENSACAG00000038602) #9	ENSACAG00000039617	TULP4 (ENSACAG00000004831) #10	ENSACAG00000026768	TMEM181 (ENSACAG00000004823) #12	DYNLT1 (ENSACAG00000004817) #13	SYTL3 (ENSACAG00000004780) #14	EZR (ENSACAG00000004653) #15	ENSACAG00000004605 #16	TAGAP (ENSACAG00000004577) #17	FNDC1 (ENSACAG00000004553) #18	SOD2 (ENSACAG00000004516) #20	ENSACAG00000004478 #21	ACAT2 (ENSACAG00000004394) #22	ENSACAG00000041299	TCP1 (ENSACAG00000004253) #23	MRPL18 (ENSACAG00000004244) #24	ENSACAG00000043187	PNLDC1 (ENSACAG00000013667) #25	ENSACAG00000045067 #26	ENSACAG00000004224 #26	ENSACAG00000035532	IGF2R (ENSACAG00000003664) #27	ENSACAG00000003650 #30	ENSACAG00000003452 #30	SLC22A3 (ENSACAG00000003423) #31	ENSACAG00000003225 #32	ENSACAG00000044185	MAP3K4 (ENSACAG00000003094) #33
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172.t #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a.c.a.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Common wall lizard	MODERN SPECIES	11	SYNJ2 (ENSPMRG00000011034) #7	SERAC1 (ENSPMRG00000011061) #8	ENSPMRG00000011072 #9	TULP4 (ENSPMRG00000000172) #10	TMEM181 (ENSPMRG00000000228) #12	DYNLT1 (ENSPMRG00000000328) #13	SYTL3 (ENSPMRG00000000357) #14	EZR (ENSPMRG00000000394) #15	ENSPMRG00000000427 #16	TAGAP (ENSPMRG00000000468) #17	FNDC1 (ENSPMRG00000000529) #18	ENSPMRG00000000603	ENSPMRG00000000612	SOD2 (ENSPMRG00000000626) #20	WTAP (ENSPMRG00000000645) #21	ACAT2 (ENSPMRG00000000659) #22	TCP1 (ENSPMRG00000000681) #23	ENSPMRG00000000709 #24	PNLDC1 (ENSPMRG00000000755) #25	ENSPMRG00000000891 #26	IGF2R (ENSPMRG00000001320) #27	ENSPMRG00000002151 #30	ENSPMRG00000002157 #30	SLC22A3 (ENSPMRG00000002162) #31	ENSPMRG00000002175 #32	MAP3K4 (ENSPMRG00000002197) #33	ENSPMRG00000002214	AGPAT4 (ENSPMRG00000002221) #34	PRKN (ENSPMRG00000002228) #36	ENSPMRG00000002245	PACRG (ENSPMRG00000002251)
Argentine black and white tegu	MODERN SPECIES	2	ZDHHC14 (ENSSMRG00000022245)	SNX9 (ENSSMRG00000022244)	SYNJ2 (ENSSMRG00000022242) #7	SERAC1 (ENSSMRG00000022241) #8	GTF2H5 (ENSSMRG00000022240) #9	TULP4 (ENSSMRG00000022236) #10	TMEM181 (ENSSMRG00000022235) #12	DYNLT1 (ENSSMRG00000022234) #13	SYTL3 (ENSSMRG00000022233) #14	EZR (ENSSMRG00000022232) #15	ENSSMRG00000022231 #16	TAGAP (ENSSMRG00000022230) #17	FNDC1 (ENSSMRG00000022228) #18	SOD2 (ENSSMRG00000022226) #20	WTAP (ENSSMRG00000022225) #21	ACAT2 (ENSSMRG00000022224) #22	TCP1 (ENSSMRG00000022221) #23	PNLDC1 (ENSSMRG00000022220) #25	ENSSMRG00000022218 #26	ENSSMRG00000022217	IGF2R (ENSSMRG00000022216) #27	ENSSMRG00000022215 #30	ENSSMRG00000022214 #30	SLC22A3 (ENSSMRG00000022213) #31	ENSSMRG00000022205 #32	MAP3K4 (ENSSMRG00000022204) #33	AGPAT4 (ENSSMRG00000022202) #34	PRKN (ENSSMRG00000022201) #36	ENSSMRG00000022199	PACRG (ENSSMRG00000022198)	QKI (ENSSMRG00000022196)
tuatara	MODERN SPECIES	319														SOD2 (ENSSPUG00000004799) #20	WTAP (ENSSPUG00000004783) #21	ACAT2 (ENSSPUG00000004776) #22	TCP1 (ENSSPUG00000004742) #23	MRPL18 (ENSSPUG00000004732) #24	PNLDC1 (ENSSPUG00000004627) #25	ENSSPUG00000004594	ENSSPUG00000004560 #26	ENSSPUG00000004551 #26	IGF2R (ENSSPUG00000004409) #27	ENSSPUG00000004340 #30	ENSSPUG00000004297 #30	SLC22A3 (ENSSPUG00000004269) #31	ENSSPUG00000003552 #32	ENSSPUG00000003415 #33	ENSSPUG00000003402	ENSSPUG00000003393	ENSSPUG00000003382
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b #32	ENSGT00940000155208.v #32	ENSGT01030000234985	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34
Aves	ANCESTRAL SPECIES	12	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b #32	ENSGT00940000155208.v #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.a.a #32	ENSGT00940000155208.u.b.b #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.a.a #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Anatidae	ANCESTRAL SPECIES		ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.b.b #32	ENSGT00940000155208.u.b.a.a.b #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Duck	MODERN SPECIES	21	SAMD5 (ENSAPLG00000016694)	STXBP5 (ENSAPLG00000014903)	ENSAPLG00000028353	RAB32 (ENSAPLG00000029671)	ENSAPLG00000014495	ENSAPLG00000026243	SHPRH (ENSAPLG00000014248)	FBXO30 (ENSAPLG00000014234)	EPM2A (ENSAPLG00000027607)	ENSAPLG00000004522	ENSAPLG00000021478	STX11 (ENSAPLG00000000719)	ENSAPLG00000005370 #18	SOD2 (ENSAPLG00000005614) #20	WTAP (ENSAPLG00000024378) #21	ACAT2 (ENSAPLG00000006048) #22	TCP1 (ENSAPLG00000006259) #23	MRPL18 (ENSAPLG00000006870) #24	PNLDC1 (ENSAPLG00000007014) #25	MAS1 (ENSAPLG00000000729) #26	IGF2R (ENSAPLG00000007173) #27	ENSAPLG00000007770 #30	ENSAPLG00000008773 #30	SLC22A3 (ENSAPLG00000009972) #31	ENSAPLG00000010099 #32	ENSAPLG00000025814	MAP3K4 (ENSAPLG00000011460) #33	AGPAT4 (ENSAPLG00000012386) #34	PRKN (ENSAPLG00000012643) #36	PACRG (ENSAPLG00000010267)	QKI (ENSAPLG00000010080)
Pink-footed goose	MODERN SPECIES	2	SASH1 (ENSABRG00000009323)	SAMD5 (ENSABRG00000009448)	STXBP5 (ENSABRG00000009475)	ADGB (ENSABRG00000009564)	RAB32 (ENSABRG00000009599)	GRM1 (ENSABRG00000009616)	SHPRH (ENSABRG00000009648)	FBXO30 (ENSABRG00000009689)	EPM2A (ENSABRG00000009692)	UTRN (ENSABRG00000010515)	STX11 (ENSABRG00000017324)	SF3B5 (ENSABRG00000017329)	FNDC1 (ENSABRG00000017335) #18	SOD2 (ENSABRG00000017350) #20	WTAP (ENSABRG00000017356) #21	ACAT2 (ENSABRG00000017364) #22	TCP1 (ENSABRG00000017371) #23	MRPL18 (ENSABRG00000017379) #24	PNLDC1 (ENSABRG00000017393) #25	MAS1 (ENSABRG00000017400) #26	IGF2R (ENSABRG00000017564) #27	ENSABRG00000018733 #30	ENSABRG00000018744 #30	SLC22A3 (ENSABRG00000018768) #31	ENSABRG00000018776 #32	ENSABRG00000018814 #32
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.a.a #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b
Japanese quail	MODERN SPECIES	21	SASH1 (ENSCJPG00005005963)	SAMD5 (ENSCJPG00005005947)	STXBP5 (ENSCJPG00005005911)	ADGB (ENSCJPG00005005864)	RAB32 (ENSCJPG00005005739)	GRM1 (ENSCJPG00005005684)	SHPRH (ENSCJPG00005005637)	FBXO30 (ENSCJPG00005005635)	EPM2A (ENSCJPG00005005632)	UTRN (ENSCJPG00005005454)	STX11 (ENSCJPG00005005444)	SF3B5 (ENSCJPG00005005441)	ENSCJPG00005005438	FNDC1 (ENSCJPG00005005370) #18	WTAP (ENSCJPG00005005347) #21	ACAT2 (ENSCJPG00005005340) #22	TCP1 (ENSCJPG00005005332) #23	MRPL18 (ENSCJPG00005005329) #24	PNLDC1 (ENSCJPG00005005315) #25	MAS1 (ENSCJPG00005005311) #26	IGF2R (ENSCJPG00005004540) #27	ENSCJPG00005004536 #30	ENSCJPG00005004522 #30	SLC22A3 (ENSCJPG00005004486) #31	ENSCJPG00005004448 #32	ENSCJPG00005004435 #32	MAP3K4 (ENSCJPG00005004431) #33	AGPAT4 (ENSCJPG00005004426) #34	PRKN (ENSCJPG00005004407) #36	PACRG (ENSCJPG00005004398)	ENSCJPG00005004387
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.a.a #32	ENSGT00940000155208.u.b.b #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
Chicken	MODERN SPECIES	22	UST (ENSGALG00010005453)	SASH1 (ENSGALG00010005442)	STXBP5 (ENSGALG00010005411)	ADGB (ENSGALG00010005391)	RAB32 (ENSGALG00010005382)	GRM1 (ENSGALG00010005371)	SHPRH (ENSGALG00010005358)	FBXO30 (ENSGALG00010005346)	EPM2A (ENSGALG00010007207)	UTRN (ENSGALG00010005045)	STX11 (ENSGALG00010005016)	SF3B5 (ENSGALG00010006627)	FNDC1 (ENSGALG00010004980) #18	SOD2 (ENSGALG00010006454) #20	WTAP (ENSGALG00010004494) #21	ACAT2 (ENSGALG00010004446) #22	TCP1 (ENSGALG00010004434) #23	MRPL18 (ENSGALG00010004424) #24	PNLDC1 (ENSGALG00010004390) #25	MAS1 (ENSGALG00010006448) #26	IGF2R (ENSGALG00010006351) #27	ENSGALG00010006339 #30	ENSGALG00010006318 #30	SLC22A3 (ENSGALG00010006293) #31	PLG (ENSGALG00010007226) #32	ENSGALG00010006269 #32	MAP3K4 (ENSGALG00010006260) #33	AGPAT4 (ENSGALG00010006227) #34	PRKN (ENSGALG00010006183) #36	PACRG (ENSGALG00010006068)	QKI (ENSGALG00010006041)
Turkey	MODERN SPECIES	11	SASH1 (ENSMGAG00000012577)	SAMD5 (ENSMGAG00000022046)	STXBP5 (ENSMGAG00000012565)	ADGB (ENSMGAG00000012559)	RAB32 (ENSMGAG00000012555)	GRM1 (ENSMGAG00000012544)	SHPRH (ENSMGAG00000012537)	FBXO30 (ENSMGAG00000012533)	EPM2A (ENSMGAG00000012531)	UTRN (ENSMGAG00000012513)	STX11 (ENSMGAG00000015852)	SF3B5 (ENSMGAG00000015849)	ENSMGAG00000012510 #18	SOD2 (ENSMGAG00000012503) #20	ENSMGAG00000012496 #21	ACAT2 (ENSMGAG00000012491) #22	TCP1 (ENSMGAG00000012484) #23	MRPL18 (ENSMGAG00000012480) #24	PNLDC1 (ENSMGAG00000012470) #25	MAS1 (ENSMGAG00000015847) #26	IGF2R (ENSMGAG00000012441) #27	ENSMGAG00000012426 #30	ENSMGAG00000012409 #30	SLC22A3 (ENSMGAG00000012396) #31	ENSMGAG00000012373 #32	ENSMGAG00000022747 #32	MAP3K4 (ENSMGAG00000012360) #33	AGPAT4 (ENSMGAG00000012346) #34	ENSMGAG00000016769 #36	ENSMGAG00000018125	ENSMGAG00000022941 #37
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.b #32	ENSGT00940000155208.u.b.b #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000155208.u.b.a.b #32	ENSGT00940000155208.u.b.b #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330
Golden eagle	MODERN SPECIES	24	SAMD5 (ENSACCG00020005315)	STXBP5 (ENSACCG00020005265)	ENSACCG00020005231	RAB32 (ENSACCG00020005221)	GRM1 (ENSACCG00020005198)	SHPRH (ENSACCG00020005151)	FBXO30 (ENSACCG00020005136)	EPM2A (ENSACCG00020005126)	ENSACCG00020005111	ENSACCG00020005092	STX11 (ENSACCG00020005086)	SF3B5 (ENSACCG00020005080)	FNDC1 (ENSACCG00020005050) #18	SOD2 (ENSACCG00020005017) #20	WTAP (ENSACCG00020005003) #21	ACAT2 (ENSACCG00020004990) #22	TCP1 (ENSACCG00020004976) #23	MRPL18 (ENSACCG00020004966) #24	PNLDC1 (ENSACCG00020004951) #25	MAS1 (ENSACCG00020004937) #26	IGF2R (ENSACCG00020003984) #27	ENSACCG00020001849 #30	ENSACCG00020001825 #30	SLC22A3 (ENSACCG00020001790) #31	ENSACCG00020001718 #32	MAP3K4 (ENSACCG00020001556) #33	AGPAT4 (ENSACCG00020001461) #34	PRKN (ENSACCG00020001423) #36	PACRG (ENSACCG00020001381)	QKI (ENSACCG00020001360)	PDE10A (ENSACCG00020001331)
Kakapo	MODERN SPECIES	2	STXBP5 (ENSSHBG00005018757)	ADGB (ENSSHBG00005000604)	RAB32 (ENSSHBG00005000606)	GRM1 (ENSSHBG00005010634)	SHPRH (ENSSHBG00005010869)	FBXO30 (ENSSHBG00005011024)	EPM2A (ENSSHBG00005011045)	ENSSHBG00005011130	ENSSHBG00005011238	ENSSHBG00005011277	STX11 (ENSSHBG00005011291)	SF3B5 (ENSSHBG00005011304)	ENSSHBG00005011358 #18	SOD2 (ENSSHBG00005011403) #20	WTAP (ENSSHBG00005011419) #21	ACAT2 (ENSSHBG00005011447) #22	TCP1 (ENSSHBG00005011488) #23	MRPL18 (ENSSHBG00005011525) #24	PNLDC1 (ENSSHBG00005011555) #25	MAS1 (ENSSHBG00005011587) #26	IGF2R (ENSSHBG00005013283) #27	SLC22A2 (ENSSHBG00005020076) #30	SLC22A3 (ENSSHBG00005020081) #31	ENSSHBG00005020135 #32	ENSSHBG00005020334 #32	ENSSHBG00005020337 #32	ENSSHBG00005020341 #32	AGPAT4 (ENSSHBG00005020401) #34	PRKN (ENSSHBG00005020412) #36	PACRG (ENSSHBG00005020428)	QKI (ENSSHBG00005020433)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Great tit	MODERN SPECIES	22	ZBTB2 (ENSPMJG00000009064)	AKAP12 (ENSPMJG00000009097)	MTHFD1L (ENSPMJG00000009104)	PLEKHG1 (ENSPMJG00000009185)	IYD (ENSPMJG00000009205)	PPP1R14C (ENSPMJG00000009207)	LRP11 (ENSPMJG00000009223)	PCMT1 (ENSPMJG00000009224)	NUP43 (ENSPMJG00000009226)	LATS1 (ENSPMJG00000009227)	KATNA1 (ENSPMJG00000009228)	GINM1 (ENSPMJG00000009292)	ENSPMJG00000009355 #18	SOD2 (ENSPMJG00000009361) #20	WTAP (ENSPMJG00000009363) #21	ACAT2 (ENSPMJG00000009365) #22	TCP1 (ENSPMJG00000009367) #23	MRPL18 (ENSPMJG00000009371) #24	PNLDC1 (ENSPMJG00000009374) #25	MAS1 (ENSPMJG00000009376) #26	IGF2R (ENSPMJG00000009420) #27	SLC22A2 (ENSPMJG00000009430) #30	ENSPMJG00000009431 #29	SLC22A3 (ENSPMJG00000009432) #31	ENSPMJG00000009433 #32	AHI1 (ENSPMJG00000009436)	MYB (ENSPMJG00000009490)	HBS1L (ENSPMJG00000009491)	ALDH8A1 (ENSPMJG00000009498)	ENSPMJG00000009611	SGK1 (ENSPMJG00000009684)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Flycatcher	MODERN SPECIES	21	ZBTB2 (ENSFALG00000027296)	AKAP12 (ENSFALG00000012244)	MTHFD1L (ENSFALG00000012200)	PLEKHG1 (ENSFALG00000012185)	IYD (ENSFALG00000012182)	ENSFALG00000023388	LRP11 (ENSFALG00000023095)	PCMT1 (ENSFALG00000026300)	NUP43 (ENSFALG00000012166)	LATS1 (ENSFALG00000012161)	KATNA1 (ENSFALG00000012149)	GINM1 (ENSFALG00000012135)	ENSFALG00000012125 #18	ENSFALG00000026104 #20	ENSFALG00000012108 #21	ACAT2 (ENSFALG00000012103) #22	TCP1 (ENSFALG00000012096) #23	MRPL18 (ENSFALG00000012086) #24	PNLDC1 (ENSFALG00000012081) #25	MAS1 (ENSFALG00000015338) #26	IGF2R (ENSFALG00000011999) #27	ENSFALG00000011977 #30	ENSFALG00000011966 #31	ENSFALG00000011959 #32	AHI1 (ENSFALG00000011949)	MYB (ENSFALG00000011914)	ENSFALG00000023919	HBS1L (ENSFALG00000011898)	ALDH8A1 (ENSFALG00000011892)	SGK1 (ENSFALG00000011887)	SLC2A12 (ENSFALG00000011874)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT01030000234639.A.a #26	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000162065 #29	ENSGT00940000160810 #31	ENSGT00940000155208.u.a #32	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726
Zebra finch	MODERN SPECIES	23	ZBTB2 (ENSTGUG00000020410)	AKAP12 (ENSTGUG00000029620)	MTHFD1L (ENSTGUG00000011286)	PLEKHG1 (ENSTGUG00000011318)	IYD (ENSTGUG00000011323)	PPP1R14C (ENSTGUG00000020746)	LRP11 (ENSTGUG00000011328)	PCMT1 (ENSTGUG00000011332)	NUP43 (ENSTGUG00000011345)	LATS1 (ENSTGUG00000011347)	KATNA1 (ENSTGUG00000011351)	GINM1 (ENSTGUG00000011370)	ENSTGUG00000011376 #18	SOD2 (ENSTGUG00000024079) #20	WTAP (ENSTGUG00000011389) #21	ACAT2 (ENSTGUG00000011404) #22	TCP1 (ENSTGUG00000011409) #23	MRPL18 (ENSTGUG00000011414) #24	PNLDC1 (ENSTGUG00000011418) #25	MAS1 (ENSTGUG00000011427) #26	IGF2R (ENSTGUG00000011428) #27	SLC22A2 (ENSTGUG00000011460) #30	SLC22A3 (ENSTGUG00000011470) #31	ENSTGUG00000011476 #32	AHI1 (ENSTGUG00000011488)	MYB (ENSTGUG00000011495)	HBS1L (ENSTGUG00000011507)	ALDH8A1 (ENSTGUG00000029181)	SGK1 (ENSTGUG00000011521)	SLC2A12 (ENSTGUG00000011539)	TBPL1 (ENSTGUG00000011544)
Common canary	MODERN SPECIES	31	ZBTB2 (ENSSCAG00000011626)	AKAP12 (ENSSCAG00000011615)	MTHFD1L (ENSSCAG00000011453)	PLEKHG1 (ENSSCAG00000011409)	IYD (ENSSCAG00000011402)	PPP1R14C (ENSSCAG00000011401)	LRP11 (ENSSCAG00000011398)	PCMT1 (ENSSCAG00000011396)	NUP43 (ENSSCAG00000011370)	LATS1 (ENSSCAG00000011352)	KATNA1 (ENSSCAG00000011333)	GINM1 (ENSSCAG00000011323)	FNDC1 (ENSSCAG00000011311) #18	SOD2 (ENSSCAG00000011298) #20	WTAP (ENSSCAG00000011282) #21	ACAT2 (ENSSCAG00000011272) #22	TCP1 (ENSSCAG00000011263) #23	MRPL18 (ENSSCAG00000011255) #24	PNLDC1 (ENSSCAG00000011248) #25	MAS1 (ENSSCAG00000011245) #26	IGF2R (ENSSCAG00000011232) #27	SLC22A2 (ENSSCAG00000011223) #30	ENSSCAG00000011220 #29	SLC22A3 (ENSSCAG00000011215) #31	ENSSCAG00000011202 #32	AHI1 (ENSSCAG00000011192)	MYB (ENSSCAG00000011107)	HBS1L (ENSSCAG00000011066)	ALDH8A1 (ENSSCAG00000011057)	ENSSCAG00000011054	ENSSCAG00000011048
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	95	ZBTB2 (ENSGFOG00000001524)	AKAP12 (ENSGFOG00000001527)	MTHFD1L (ENSGFOG00000001800)	PLEKHG1 (ENSGFOG00000005518)	IYD (ENSGFOG00000005534)	LRP11 (ENSGFOG00000005546)	PCMT1 (ENSGFOG00000005555)	NUP43 (ENSGFOG00000005569)	LATS1 (ENSGFOG00000005589)	KATNA1 (ENSGFOG00000005594)	GINM1 (ENSGFOG00000005603)	ENSGFOG00000005628 #18	SOD2 (ENSGFOG00000005682) #20	WTAP (ENSGFOG00000005775) #21	ENSGFOG00000005781 #22	ENSGFOG00000005792 #22	TCP1 (ENSGFOG00000005797) #23	MRPL18 (ENSGFOG00000005807) #24	PNLDC1 (ENSGFOG00000005813) #25	MAS1 (ENSGFOG00000005827) #26	IGF2R (ENSGFOG00000005933) #27	ENSGFOG00000007414 #29	ENSGFOG00000007423 #30	ENSGFOG00000007439 #30	SLC22A3 (ENSGFOG00000007447) #31	ENSGFOG00000007471 #32	AHI1 (ENSGFOG00000007569)	MYB (ENSGFOG00000007618)	HBS1L (ENSGFOG00000008080)	ALDH8A1 (ENSGFOG00000008244)	SGK1 (ENSGFOG00000008254)
Medium ground finch	MODERN SPECIES	95	RMND1 (ENSGFOG00000001514)	ZBTB2 (ENSGFOG00000001524)	AKAP12 (ENSGFOG00000001527)	MTHFD1L (ENSGFOG00000001800)	PLEKHG1 (ENSGFOG00000005518)	IYD (ENSGFOG00000005534)	LRP11 (ENSGFOG00000005546)	PCMT1 (ENSGFOG00000005555)	NUP43 (ENSGFOG00000005569)	LATS1 (ENSGFOG00000005589)	KATNA1 (ENSGFOG00000005594)	GINM1 (ENSGFOG00000005603)	ENSGFOG00000005628 #18	SOD2 (ENSGFOG00000005682) #20	WTAP (ENSGFOG00000005775) #21	ENSGFOG00000005781 #22	ENSGFOG00000005792 #22	TCP1 (ENSGFOG00000005797) #23	MRPL18 (ENSGFOG00000005807) #24	PNLDC1 (ENSGFOG00000005813) #25	MAS1 (ENSGFOG00000005827) #26	IGF2R (ENSGFOG00000005933) #27	ENSGFOG00000007414 #29	ENSGFOG00000007423 #30	ENSGFOG00000007439 #30	SLC22A3 (ENSGFOG00000007447) #31	ENSGFOG00000007471 #32	AHI1 (ENSGFOG00000007569)	MYB (ENSGFOG00000007618)	HBS1L (ENSGFOG00000008080)	ALDH8A1 (ENSGFOG00000008244)
African ostrich	MODERN SPECIES	1068											UTRN (ENSSCUG00000017679)	STX11 (ENSSCUG00000018100)	FNDC1 (ENSSCUG00000018110) #18	SOD2 (ENSSCUG00000018122) #20	WTAP (ENSSCUG00000018124) #21	ACAT2 (ENSSCUG00000018126) #22	TCP1 (ENSSCUG00000018131) #23	MRPL18 (ENSSCUG00000018135) #24	PNLDC1 (ENSSCUG00000018136) #25	ENSSCUG00000018139 #26	MAS1 (ENSSCUG00000018141) #26	IGF2R (ENSSCUG00000018182) #27	ENSSCUG00000018370 #30	ENSSCUG00000018372 #30	SLC22A3 (ENSSCUG00000018373) #31	ENSSCUG00000018374 #32	ENSSCUG00000018375 #32	ENSSCUG00000018376 #32	MAP3K4 (ENSSCUG00000018427) #33	ENSSCUG00000018465	AGPAT4 (ENSSCUG00000018471) #34
Australian saltwater crocodile	MODERN SPECIES	60	SYNJ2 (ENSCPRG00005017886) #7	SERAC1 (ENSCPRG00005017880) #8	GTF2H5 (ENSCPRG00005017877) #9	TULP4 (ENSCPRG00005017871) #10	TMEM181 (ENSCPRG00005017851) #12	DYNLT1 (ENSCPRG00005017844) #13	ENSCPRG00005017839 #14	ENSCPRG00005017836 #14	EZR (ENSCPRG00005017816) #15	RSPH3 (ENSCPRG00005017811) #16	TAGAP (ENSCPRG00005017800) #17	ENSCPRG00005017789	FNDC1 (ENSCPRG00005017781) #18	SOD2 (ENSCPRG00005017772) #20	WTAP (ENSCPRG00005017767) #21	ACAT2 (ENSCPRG00005017764) #22	TCP1 (ENSCPRG00005017758) #23	MRPL18 (ENSCPRG00005017753) #24	PNLDC1 (ENSCPRG00005017732) #25	MAS1 (ENSCPRG00005017726) #26	IGF2R (ENSCPRG00005017718) #27	ENSCPRG00005017706 #30	ENSCPRG00005017702 #30	SLC22A3 (ENSCPRG00005017674) #31	ENSCPRG00005017664 #32	ENSCPRG00005017662 #32	ENSCPRG00005017657 #32	ENSCPRG00005017655	MAP3K4 (ENSCPRG00005017632) #33	ENSCPRG00005017627	AGPAT4 (ENSCPRG00005017619) #34
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208 #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.s #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Emydidae	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715 #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.s #32	ENSGT00880000138034 #33	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877	ENSGT00940000156543
painted turtle	MODERN SPECIES	2409																ACAT2 (ENSCPBG00000004088) #22	TCP1 (ENSCPBG00000004064) #23	MRPL18 (ENSCPBG00000004059) #24	PNLDC1 (ENSCPBG00000004050) #25	IGF2R (ENSCPBG00000002366) #27	ENSCPBG00000001937 #30	ENSCPBG00000001916 #30	SLC22A3 (ENSCPBG00000001892) #31	ENSCPBG00000001033 #32	MAP3K4 (ENSCPBG00000000806) #33	AGPAT4 (ENSCPBG00000000721) #34	ENSCPBG00000000680	ENSCPBG00000000631 #36	ENSCPBG00000000618	CA10 (ENSCPBG00000000583)	UTP18 (ENSCPBG00000000512)
Three-toed box turtle	MODERN SPECIES	31	ZDHHC14 (ENSTMTG00000001723)	SNX9 (ENSTMTG00000001706)	SYNJ2 (ENSTMTG00000001469) #7	SERAC1 (ENSTMTG00000001418) #8	GTF2H5 (ENSTMTG00000001408) #9	TULP4 (ENSTMTG00000001394) #10	TMEM181 (ENSTMTG00000001104) #12	DYNLT1 (ENSTMTG00000001026) #13	SYTL3 (ENSTMTG00000001016) #14	EZR (ENSTMTG00000000998) #15	RSPH3 (ENSTMTG00000000966) #16	TAGAP (ENSTMTG00000000916) #17	FNDC1 (ENSTMTG00000000878) #18	SOD2 (ENSTMTG00000000856) #20	WTAP (ENSTMTG00000000840) #21	ACAT2 (ENSTMTG00000000811) #22	TCP1 (ENSTMTG00000000776) #23	MRPL18 (ENSTMTG00000000765) #24	PNLDC1 (ENSTMTG00000000753) #25	IGF2R (ENSTMTG00000000723) #27	ENSTMTG00000000699 #30	ENSTMTG00000000691 #30	SLC22A3 (ENSTMTG00000000668) #31	ENSTMTG00000000636 #32	MAP3K4 (ENSTMTG00000000543) #33	AGPAT4 (ENSTMTG00000000495) #34	ENSTMTG00000000469 #36	ENSTMTG00000000447 #36	ENSTMTG00000000439	ENSTMTG00000000424 #36	PACRG (ENSTMTG00000000409)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715.i #7	ENSGT00390000003560 #8	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #12	ENSGT00940000154531 #13	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #24	ENSGT00940000153167.A.a #25	ENSGT00390000013943 #27	ENSGT00940000155089.h #30	ENSGT00940000155089.g #30	ENSGT00940000160810 #31	ENSGT00940000155208.s #32	ENSGT00880000138034 #33	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #34	ENSGT00390000011034 #36	ENSGT00940000157330	ENSGT00940000155310.b	ENSGT00390000009877
Abingdon island giant tortoise	MODERN SPECIES	260													FNDC1 (ENSCABG00000022586) #18	SOD2 (ENSCABG00000022582) #20	WTAP (ENSCABG00000022575) #21	ACAT2 (ENSCABG00000022573) #22	TCP1 (ENSCABG00000022555) #23	ENSCABG00000022550	ENSCABG00000022547	MRPL18 (ENSCABG00000022545) #24
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005020455	SYNJ2 (ENSGEVG00005020460) #7	SERAC1 (ENSGEVG00005020467) #8	GTF2H5 (ENSGEVG00005020471) #9	TULP4 (ENSGEVG00005020475) #10	TMEM181 (ENSGEVG00005020499) #12	DYNLT1 (ENSGEVG00005020562) #13	SYTL3 (ENSGEVG00005020566) #14	EZR (ENSGEVG00005020577) #15	RSPH3 (ENSGEVG00005020587) #16	ENSGEVG00005020591	TAGAP (ENSGEVG00005020595) #17	FNDC1 (ENSGEVG00005020604) #18	SOD2 (ENSGEVG00005020614) #20	WTAP (ENSGEVG00005020617) #21	ACAT2 (ENSGEVG00005020622) #22	TCP1 (ENSGEVG00005020630) #23	MRPL18 (ENSGEVG00005020637) #24	PNLDC1 (ENSGEVG00005020642) #25	IGF2R (ENSGEVG00005020730) #27	ENSGEVG00005020912 #30	ENSGEVG00005020924 #30	ENSGEVG00005020929 #31	ENSGEVG00005020932 #31	ENSGEVG00005020936 #32	MAP3K4 (ENSGEVG00005020957) #33	ENSGEVG00005020964	AGPAT4 (ENSGEVG00005020966) #34	ENSGEVG00005020970 #36	PRKN (ENSGEVG00005009001) #36	PACRG (ENSGEVG00005009052)
Chinese turtle	MODERN SPECIES	461	ENSPSIG00000010386	SNX9 (ENSPSIG00000011194)	SYNJ2 (ENSPSIG00000014659) #7	SERAC1 (ENSPSIG00000016316) #8	GTF2H5 (ENSPSIG00000017396) #9	TULP4 (ENSPSIG00000017426) #10	TMEM181 (ENSPSIG00000017537) #12	DYNLT1 (ENSPSIG00000017633) #13	SYTL3 (ENSPSIG00000017651) #14	EZR (ENSPSIG00000017922) #15	RSPH3 (ENSPSIG00000007028) #16	TAGAP (ENSPSIG00000007340) #17	FNDC1 (ENSPSIG00000007390) #18	SOD2 (ENSPSIG00000007847) #20	WTAP (ENSPSIG00000008684) #21	ACAT2 (ENSPSIG00000008840) #22	TCP1 (ENSPSIG00000010001) #23	ENSPSIG00000000127	MRPL18 (ENSPSIG00000010990) #24	PNLDC1 (ENSPSIG00000011419) #25	IGF2R (ENSPSIG00000011476) #27	ENSPSIG00000015704 #30	ENSPSIG00000015715 #30	ENSPSIG00000016093 #30	SLC22A3 (ENSPSIG00000016587) #31	ENSPSIG00000017202 #32	MAP3K4 (ENSPSIG00000017964) #33	AGPAT4 (ENSPSIG00000005665) #34	ENSPSIG00000005683 #36	ENSPSIG00000005688 #36	ENSPSIG00000000131
Anura	ANCESTRAL SPECIES	63	ENSGT00390000018900	ENSGT00390000004799.c	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766	ENSGT00940000156992	ENSGT00940000160590	ENSGT00940000156546	ENSGT00390000016158	ENSGT00730000111005	ENSGT00940000162752	ENSGT00940000156258	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000013943 #27	ENSGT00940000155089 #30	ENSGT01090000260098.A	ENSGT00390000011342	ENSGT00940000155621	ENSGT00940000158236	ENSGT00940000155393.d	ENSGT00940000155683	ENSGT00530000063692.b	ENSGT00950000183154.a	ENSGT00390000011642	ENSGT00940000154481.a.b	ENSGT00940000158133	ENSGT00390000012924.a
Leishan spiny toad	MODERN SPECIES	7	C6orf120 (ENSLLEG00000022689)	WDR27 (ENSLLEG00000022789)	ENSLLEG00000023793	ENSLLEG00000023816	THBS2 (ENSLLEG00000023860)	ENSLLEG00000024296	ENSLLEG00000024309	ENSLLEG00000024322	DPY30 (ENSLLEG00000024338)	PSEN2 (ENSLLEG00000024395)	MEMO1 (ENSLLEG00000024743)	ENSLLEG00000024976	SRD5A2 (ENSLLEG00000025015)	SOD2 (ENSLLEG00000005025) #20	WTAP (ENSLLEG00000005114) #21	ACAT2 (ENSLLEG00000005204) #22	TCP1 (ENSLLEG00000005309) #23	ENSLLEG00000006165	HEATR5B (ENSLLEG00000006495)	ENSLLEG00000006645	ENSLLEG00000006794	ENSLLEG00000006803	ENSLLEG00000006822	ENSLLEG00000006854	ARG1 (ENSLLEG00000006888)	MED23 (ENSLLEG00000007103)	ENPP3 (ENSLLEG00000007716)	ENPP1 (ENSLLEG00000008096)	ENSLLEG00000008179	CCN2 (ENSLLEG00000008251)	ENSLLEG00000008629
Frog	MODERN SPECIES	5	arv1 (ENSXETG00000026359)	fam89a (ENSXETG00000039518)	vit (ENSXETG00000022285)	opn6a (ENSXETG00000022282)	akap12 (ENSXETG00000037915)	mthfd1l (ENSXETG00000013956)	plekhg1 (ENSXETG00000007619)	iyd (ENSXETG00000011383)	hnrnpu (ENSXETG00000011386)	desi2 (ENSXETG00000045919)	ttll2 (ENSXETG00000027373)	spast (ENSXETG00000011392)	fndc1 (ENSXETG00000035120) #18	sod2 (ENSXETG00000021180) #20	wtap (ENSXETG00000021175) #21	acat2 (ENSXETG00000021174) #22	tcp1 (ENSXETG00000038604) #23	igf2r (ENSXETG00000021138) #27	slc22a2 (ENSXETG00000033727) #30	gje1 (ENSXETG00000049272)	adgrg6 (ENSXETG00000030163)	vta1 (ENSXETG00000021109)	oprm1 (ENSXETG00000041984)	ENSXETG00000049101	rgs17 (ENSXETG00000042465)	sos1 (ENSXETG00000008386)	rdh13 (ENSXETG00000008385)	slc30a6 (ENSXETG00000008384)	edaradd (ENSXETG00000032415)	riox1 (ENSXETG00000032839)	ENSXETG00000043039
Coelacanth	MODERN SPECIES	650													SOD2 (ENSLACG00000015527) #20	WTAP (ENSLACG00000015331) #21	ENSLACG00000015202	ACAT2 (ENSLACG00000014979) #22	TCP1 (ENSLACG00000014807) #23	ENSLACG00000014342	STX11 (ENSLACG00000014184)	ENSLACG00000011211	ENSLACG00000010026	ENSLACG00000007079	ENSLACG00000005993
Actinopterygii	ANCESTRAL SPECIES	69							ENSGT00940000156034.a	ENSGT00940000167198	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a	ENSGT00940000167949	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726
Reedfish	MODERN SPECIES	6	FERMT1 (ENSECRG00000016966)	pak5 (ENSECRG00000017013)	LAMP5 (ENSECRG00000017058)	ENSECRG00000017078	PLCB4 (ENSECRG00000017132)	PLCB1 (ENSECRG00000011416)	hao1 (ENSECRG00000011686)	enpp1 (ENSECRG00000011769)	ENSECRG00000011803	ENSECRG00000011818 #14	ezra (ENSECRG00000011838) #15	rsph3 (ENSECRG00000011873) #16	tagapb (ENSECRG00000011888) #17	sod2 (ENSECRG00000011913) #20	wtap (ENSECRG00000011932) #21	acat2 (ENSECRG00000011958) #22	tcp1 (ENSECRG00000011980) #23	PLEKHG1 (ENSECRG00000012027)	iyd (ENSECRG00000012047)	ppp1r14c (ENSECRG00000012056)	MAP7 (ENSECRG00000012118)	ENSECRG00000012212	BCLAF1 (ENSECRG00000012238)	armc1l (ENSECRG00000012261)	mtfr2 (ENSECRG00000012286)	PDE7B (ENSECRG00000012364)	ahi1 (ENSECRG00000012493)	myb (ENSECRG00000012557)	hbs1l (ENSECRG00000012621)	aldh8a1 (ENSECRG00000012650)	NHSL1 (ENSECRG00000012718)
Neopterygii	ANCESTRAL SPECIES	88												ENSGT00940000155086.A	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a	ENSGT00940000167949	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726
Spotted gar	MODERN SPECIES	647	GRM1 (ENSLOCG00000016149)	SHPRH (ENSLOCG00000016153)	ENSLOCG00000016156	fbxo30a (ENSLOCG00000016157)	EPM2A (ENSLOCG00000016158)	ENSLOCG00000016161	UTRN (ENSLOCG00000016162)	agbl5 (ENSLOCG00000016175)	ost4 (ENSLOCG00000017994)	selenoi (ENSLOCG00000016178)	drc1 (ENSLOCG00000016179)	OTOF (ENSLOCG00000016183)	FNDC1 (ENSLOCG00000016185) #18	sod2 (ENSLOCG00000016188) #20	wtap (ENSLOCG00000016191) #21	acat2 (ENSLOCG00000016193) #22	tcp1 (ENSLOCG00000016197) #23	PLEKHG1 (ENSLOCG00000016199)	iyd (ENSLOCG00000016202)	ppp1r14c (ENSLOCG00000016203)	MAP7 (ENSLOCG00000016205)	ENSLOCG00000016206	BCLAF1 (ENSLOCG00000016208)	armc1l (ENSLOCG00000016210)	mtfr2 (ENSLOCG00000016211)	PDE7B (ENSLOCG00000016213)	ahi1 (ENSLOCG00000016215)	myb (ENSLOCG00000016218)	hbs1l (ENSLOCG00000016221)	aldh8a1 (ENSLOCG00000016225)	SGK1 (ENSLOCG00000016226)
Osteoglossocephalai	ANCESTRAL SPECIES	183													ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712
Osteoglossiformes	ANCESTRAL SPECIES	16											ENSGT00940000153804.A	ENSGT00940000155086.A.h	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248.oc.b	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000156399.vb	ENSGT00940000164496.b
Asian bonytongue	MODERN SPECIES		ENSSFOG00015019027	CDC25B (ENSSFOG00015019012)	cactin (ENSSFOG00015018985)	gfra4a (ENSSFOG00015018969)	ATRN (ENSSFOG00015018905)	dnaaf9 (ENSSFOG00015018879)	ENSSFOG00015018852	SLC4A11 (ENSSFOG00015018690)	EIF2AK3 (ENSSFOG00015018609)	zfyve28 (ENSSFOG00015027771)	foxi2 (ENSSFOG00015026749)	drc1 (ENSSFOG00015018560)	OTOF (ENSSFOG00015018253)	sod2 (ENSSFOG00015018195) #20	wtap (ENSSFOG00015032191) #21	acat2 (ENSSFOG00015018150) #22	tcp1 (ENSSFOG00015018108) #23	ENSSFOG00015018085	PLEKHG1 (ENSSFOG00015024237)	iyd (ENSSFOG00015018043)	ppp1r14c (ENSSFOG00015018031)	ENSSFOG00015018022	MAP7 (ENSSFOG00015017910)	BCLAF1 (ENSSFOG00015017853)	armc1l (ENSSFOG00015017825)	mtfr2 (ENSSFOG00015017810)	MYB (ENSSFOG00015017613)	hbs1l (ENSSFOG00015017544)	aldh8a1 (ENSSFOG00015033318)	sgk1 (ENSSFOG00015017351)	slc2a12 (ENSSFOG00015017339)
P. kingsleyae	MODERN SPECIES	82	ankef1a (ENSPKIG00000022097)	snap25a (ENSPKIG00000022134)	cnstb (ENSPKIG00000022184)	KIF26B (ENSPKIG00000022242)	hnrnpub (ENSPKIG00000022332)	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686) #18	sod2 (ENSPKIG00000022722) #20	wtap (ENSPKIG00000022748) #21	wtap (ENSPKIG00000022767) #21	acat2 (ENSPKIG00000022793) #22	tcp1 (ENSPKIG00000022823) #23	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)	MAP7 (ENSPKIG00000022970)	BCLAF1 (ENSPKIG00000023059)	ENSPKIG00000023071	armc1l (ENSPKIG00000023085)	mtfr2 (ENSPKIG00000023105)	PDE7B (ENSPKIG00000023116)	MYB (ENSPKIG00000023135)	hbs1l (ENSPKIG00000023171)	aldh8a1 (ENSPKIG00000023217)	ENSPKIG00000023230	SGK1 (ENSPKIG00000023267)
Clupeocephala	ANCESTRAL SPECIES	140											ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00650000094590	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614
Otomorpha	ANCESTRAL SPECIES	166													ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656	ENSGT00940000154790.a.a.b.g
Clupeiformes	ANCESTRAL SPECIES	130	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000007596	ENSCHAG00000007614	ENSCHAG00000007633	ENSCHAG00000007698	ENSCHAG00000007723	ENSCHAG00000007773	ENSCHAG00000007791	ENSCHAG00000007805	ENSCHAG00000007830	ENSCHAG00000007840	ENSCHAG00000007844	ENSCHAG00000007859	ENSCHAG00000007865	ENSCHAG00000007874	ENSCHAG00000007898	acat2 (ENSCHAG00000007921) #22	ENSCHAG00000007953	hebp2 (ENSCHAG00000008010)	acbd3 (ENSCHAG00000008028)	mixl1 (ENSCHAG00000008042)	lin9 (ENSCHAG00000008069)	parp1 (ENSCHAG00000008512)	ENSCHAG00000009072	ENSCHAG00000009099	ENSCHAG00000009616	pomcb (ENSCHAG00000009641)	ENSCHAG00000009799	ENSCHAG00000009869	ENSCHAG00000011980	ENSCHAG00000012089	ENSCHAG00000012205
Denticle herring	MODERN SPECIES	5	pak6b (ENSDCDG00000020509)	ENSDCDG00000020508	ENSDCDG00000020506	hpcal1 (ENSDCDG00000020491)	pdia6 (ENSDCDG00000020444)	otofa (ENSDCDG00000020229)	ENSDCDG00000020161	ENSDCDG00000020158	ENSDCDG00000020140	ENSDCDG00000020138	ENSDCDG00000020134	ENSDCDG00000020126	FNDC1 (ENSDCDG00000034402) #18	sod2 (ENSDCDG00000034388) #20	wtap (ENSDCDG00000034379) #21	acat2 (ENSDCDG00000034366) #22	KIF25 (ENSDCDG00000034359)	NHSL1 (ENSDCDG00000034352)	acbd3 (ENSDCDG00000034347)	mixl1 (ENSDCDG00000034346)	lin9 (ENSDCDG00000034335)	ENSDCDG00000034326	parp1 (ENSDCDG00000034290)	ENSDCDG00000034277	ENSDCDG00000034276	ENSDCDG00000034266	ENSDCDG00000034259	EFR3B (ENSDCDG00000033886)	pomcb (ENSDCDG00000033865)	ENSDCDG00000033864	SNX9 (ENSDCDG00000033822)
Otophysi	ANCESTRAL SPECIES	80			ENSGT00390000007015.w	ENSGT00940000156087.a.a	ENSGT00390000016577.b.a	ENSGT00530000063737.l.b	ENSGT00390000016904	ENSGT00940000168283	ENSGT00390000003866.a.b.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT01030000234667.b.f.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h	ENSGT00940000157082	ENSGT00730000111187.a.b
Characiphysae	ANCESTRAL SPECIES	118	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00390000001793	ENSGT00940000161652.b.b	ENSGT00940000157701.b	ENSGT00940000156464	ENSGT00940000156714.b	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000155734	ENSGT00940000155699.a.a
Characoidei	ANCESTRAL SPECIES	130	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a
Red-bellied piranha	MODERN SPECIES	11	ppp2r5cb (ENSPNAG00000020720)	ENSPNAG00000020743	ENSPNAG00000020754	slc25a29 (ENSPNAG00000020765)	myh6 (ENSPNAG00000020778)	pak6b (ENSPNAG00000020809)	ENSPNAG00000020829	apobb.1 (ENSPNAG00000021212)	hpcal1 (ENSPNAG00000021252)	pdia6 (ENSPNAG00000021334)	otofa (ENSPNAG00000021496)	ENSPNAG00000021542	ENSPNAG00000021561 #18	sod2 (ENSPNAG00000021603) #20	wtap (ENSPNAG00000006471) #21	acat2 (ENSPNAG00000021694) #22	KIF25 (ENSPNAG00000021740)	hebp2 (ENSPNAG00000021771)	NHSL1 (ENSPNAG00000021901)	acbd3 (ENSPNAG00000021929)	ccr6a (ENSPNAG00000021944)	cep43 (ENSPNAG00000003705)	myt1la (ENSPNAG00000022305)	rnaseh1 (ENSPNAG00000022344)	rps7 (ENSPNAG00000022404)	allc (ENSPNAG00000022422)	sox11b (ENSPNAG00000022444)	rnf144ab (ENSPNAG00000022457)	id2b (ENSPNAG00000022467)	kidins220b (ENSPNAG00000022762)	mboat2b (ENSPNAG00000022858)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029912	slc25a29 (ENSAMXG00000032847)	myh6 (ENSAMXG00000025295)	ENSAMXG00000029153	pak6b (ENSAMXG00000012204)	ENSAMXG00000012234	apobb.1 (ENSAMXG00000012267)	hpcal1 (ENSAMXG00000031838)	pdia6 (ENSAMXG00000034339)	otofa (ENSAMXG00000002401)	ENSAMXG00000037436	ENSAMXG00000002234	FNDC1 (ENSAMXG00000002223) #18	sod2 (ENSAMXG00000040232) #20	wtap (ENSAMXG00000030347) #21	acat2 (ENSAMXG00000002149) #22	ENSAMXG00000002134	hebp2 (ENSAMXG00000034618)	NHSL1 (ENSAMXG00000002111)	acbd3 (ENSAMXG00000002091)	ENSAMXG00000043932	ccr6a (ENSAMXG00000041469)	cep43 (ENSAMXG00000002000)	myt1la (ENSAMXG00000001873)	ENSAMXG00000039837	rnaseh1 (ENSAMXG00000042940)	rps7 (ENSAMXG00000041019)	allc (ENSAMXG00000039561)	sox11b (ENSAMXG00000001703)	rnf144ab (ENSAMXG00000042340)	ENSAMXG00000041355
Electric eel	MODERN SPECIES	32	ENSEEEG00000009121	ENSEEEG00000009122	slc25a29 (ENSEEEG00000009123)	ENSEEEG00000009145	pak6b (ENSEEEG00000009146)	ENSEEEG00000009147	apobb.1 (ENSEEEG00000009150)	hpcal1 (ENSEEEG00000009153)	pdia6 (ENSEEEG00000009160)	otofa (ENSEEEG00000009415)	ENSEEEG00000009474	ENSEEEG00000009477	FNDC1 (ENSEEEG00000009480) #18	sod2 (ENSEEEG00000009496) #20	wtap (ENSEEEG00000009684) #21	acat2 (ENSEEEG00000009685) #22	ENSEEEG00000009686	hebp2 (ENSEEEG00000009687)	NHSL1 (ENSEEEG00000009690)	acbd3 (ENSEEEG00000009692)	KBTBD11 (ENSEEEG00000009724)	ccr6a (ENSEEEG00000009725)	cep43 (ENSEEEG00000009727)	rnaseh1 (ENSEEEG00000009735)	rps7 (ENSEEEG00000009739)	allc (ENSEEEG00000009756)	sox11b (ENSEEEG00000009766)	rnf144ab (ENSEEEG00000009767)	id2b (ENSEEEG00000009787)	kidins220b (ENSEEEG00000009802)	mboat2b (ENSEEEG00000009813)
Channel catfish	MODERN SPECIES	17	hsp90a.1 (ENSIPUG00000022238)	ppp2r5cb (ENSIPUG00000022710)	DIO3 (ENSIPUG00000022732)	slc25a29 (ENSIPUG00000022736)	myh6 (ENSIPUG00000022744)	pak6b (ENSIPUG00000022810)	ENSIPUG00000022824	apobb.1 (ENSIPUG00000022832)	HPCAL1 (ENSIPUG00000022844)	pdia6 (ENSIPUG00000022856)	otofa (ENSIPUG00000022878)	c25h2orf70 (ENSIPUG00000022903)	fndc1 (ENSIPUG00000022909) #18	SOD2 (ENSIPUG00000022934) #20	wtap (ENSIPUG00000022938) #21	acat2 (ENSIPUG00000022947) #22	kif25 (ENSIPUG00000022979)	hebp2 (ENSIPUG00000022989)	nhsl1 (ENSIPUG00000022998)	acbd3 (ENSIPUG00000023014)	ccr6a (ENSIPUG00000023019)	fgfr1op (ENSIPUG00000023022)	myt1la (ENSIPUG00000023048)	rnaseh1 (ENSIPUG00000023060)	rps7 (ENSIPUG00000023071)	allc (ENSIPUG00000023088)	sox11b (ENSIPUG00000023096)	ENSIPUG00000023404	id2b (ENSIPUG00000023411)	kidins220b (ENSIPUG00000023417)	mboat2b (ENSIPUG00000023454)
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00940000162477.c	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b	ENSGT00510000048701.a	ENSGT00940000156778.l	ENSGT00530000063408.A	ENSGT00940000160723	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00940000155936.a.a	ENSGT00390000017067	ENSGT00940000164632.b.b.b	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000156570.b	ENSGT00940000157283	ENSGT00390000018116
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	420						ENSGT00940000156778.l.d	ENSGT00530000063408.A.l.b	ENSGT00940000160723.i	ENSGT00590000083139.d.b.fb.b	ENSGT00940000154645.A.j	ENSGT00940000155646.n.b	ENSGT00940000155086.B.d	ENSGT00530000063558.B.f #18	ENSGT00390000011877.a #20	ENSGT00390000013931.f #21	ENSGT01030000234626.B.pb #22	ENSGT00940000162166.g.b	ENSGT00940000160412.a.b	ENSGT00950000182963.a.a.k.a	ENSGT00530000063651.a.o.a	ENSGT01030000234667.b.f.a.d	ENSGT00390000007441.e	ENSGT00940000155671.y.b.b	ENSGT00390000003466.m	ENSGT00390000014122.g	ENSGT00390000001793.d	ENSGT00940000161652.b.b.b.b.a	ENSGT00940000157701.f.a.b	ENSGT00940000156464.eb.a.a	ENSGT00940000156714.b.a	ENSGT01030000234564.a.a.a.a.b.b.e
Goldfish	MODERN SPECIES	39	casp8ap2 (ENSCARG00000044635)	GJA10 (ENSCARG00000044641)	BACH2 (ENSCARG00000044654)	map3k7 (ENSCARG00000044760)	cited2 (ENSCARG00000047369)	ENSCARG00000047379	cpsf3 (ENSCARG00000047449)	asap2b (ENSCARG00000047812)	e2f6 (ENSCARG00000048277)	mboat2b (ENSCARG00000022572)	kidins220b (ENSCARG00000022840)	id2b (ENSCARG00000022907)	FNDC1 (ENSCARG00000022921) #18	sod2 (ENSCARG00000022970) #20	wtap (ENSCARG00000023002) #21	acat2 (ENSCARG00000023014) #22	hebp2 (ENSCARG00000023065)	NHSL1 (ENSCARG00000023097)	acbd3 (ENSCARG00000023157)	ccr6a (ENSCARG00000023204)	cep43 (ENSCARG00000023220)	myt1la (ENSCARG00000023430)	rnaseh1 (ENSCARG00000025518)	rps7 (ENSCARG00000025561)	allc (ENSCARG00000025610)	prg4b (ENSCARG00000025761)	scyl3 (ENSCARG00000025783)	ENSCARG00000025793	gpr176 (ENSCARG00000025804)	THBS1 (ENSCARG00000025844)	rxrgb (ENSCARG00000026321)
Cyprininae_a	ANCESTRAL SPECIES	86	ENSGT01030000234595.A.b.a.b.d	ENSGT00940000162477.c.g.b	ENSGT00390000014904.f	ENSGT00950000182906.b.a.i.b.c	ENSGT00510000048701.a.c	ENSGT00940000156778.l.d	ENSGT00530000063408.A.l.b	ENSGT00940000160723.i	ENSGT00590000083139.d.b.fb.b	ENSGT00940000154645.A.j	ENSGT00940000155646.n.b	ENSGT00990000210545	ENSGT00530000063558.B.f #18	ENSGT00390000011877.a #20	ENSGT00390000013931.f #21	ENSGT01030000234626.B.pb #22	ENSGT00940000162166.g.b	ENSGT00940000160412.a.b	ENSGT00950000182963.a.a.k.a	ENSGT00530000063651.a.o.a	ENSGT01030000234667.b.f.a.d	ENSGT00390000007441.e	ENSGT00940000155671.y.b.b	ENSGT00390000003466.m	ENSGT00390000014122.g	ENSGT00390000001793.d	ENSGT00940000161652.b.b.b.b.a	ENSGT00940000157701.f.a.b	ENSGT00940000156464.eb.a.a	ENSGT00940000156714.b.a	ENSGT01030000234564.a.a.a.a.b.b.e
Common carp reference	MODERN SPECIES	28	GRM1 (ENSCCRG00000039754)	rab32a (ENSCCRG00000053320)	stxbp5a (ENSCCRG00000015647)	SAMD5 (ENSCCRG00000071091)	sash1a (ENSCCRG00000035123)	usta (ENSCCRG00000074877)	slc22a16 (ENSCCRG00000033251)	apobb.1 (ENSCCRG00000036664)	pdia6 (ENSCCRG00000035441)	hpcal1 (ENSCCRG00000072721)	otofa (ENSCCRG00000036721)	ENSCCRG00000009675	FNDC1 (ENSCCRG00000061407) #18	sod2 (ENSCCRG00000053850) #20	wtap (ENSCCRG00000036927) #21	acat2 (ENSCCRG00000076853) #22	ENSCCRG00000064494	ENSCCRG00000054161	acbd3 (ENSCCRG00000036992)	ccr6a (ENSCCRG00000053257)	cep43 (ENSCCRG00000074485)	myt1la (ENSCCRG00000064746)	rnaseh1 (ENSCCRG00000014420)	rps7 (ENSCCRG00000014352)	allc (ENSCCRG00000012846)	sox11b (ENSCCRG00000064255)	rnf144ab (ENSCCRG00000036211)	id2b (ENSCCRG00000058010)	kidins220b (ENSCCRG00000050017)	mboat2b (ENSCCRG00000049813)	e2f6 (ENSCCRG00000049786)
Golden-line barbel	MODERN SPECIES	14	GRM1 (ENSSGRG00000039593)	rab32a (ENSSGRG00000039598)	ENSSGRG00000039602	stxbp5a (ENSSGRG00000039621)	SAMD5 (ENSSGRG00000039656)	sash1a (ENSSGRG00000039664)	slc22a16 (ENSSGRG00000039670)	apobb.1 (ENSSGRG00000039671)	hpcal1 (ENSSGRG00000039674)	pdia6 (ENSSGRG00000039707)	ENSSGRG00000040440	ENSSGRG00000040448	ENSSGRG00000040450 #18	sod2 (ENSSGRG00000040469) #20	wtap (ENSSGRG00000040595) #21	acat2 (ENSSGRG00000040620) #22	hebp2 (ENSSGRG00000040677)	NHSL1 (ENSSGRG00000040679)	acbd3 (ENSSGRG00000040680)	cep43 (ENSSGRG00000040684)	myt1la (ENSSGRG00000040685)	rnaseh1 (ENSSGRG00000040687)	allc (ENSSGRG00000040688)	sox11b (ENSSGRG00000040812)	rnf144ab (ENSSGRG00000040813)	id2b (ENSSGRG00000040814)	kidins220b (ENSSGRG00000040828)	mboat2b (ENSSGRG00000041592)	ENSSGRG00000041611	asap2b (ENSSGRG00000041638)	ENSSGRG00000042339
Cyprininae	ANCESTRAL SPECIES	271	ENSGT00940000162477.c.g.a	ENSGT00390000014904.e	ENSGT00950000182906.b.a.i.b.d	ENSGT00510000048701.a.d	ENSGT00940000156778.l.c	ENSGT00530000063408.A.l.a	ENSGT00940000160723.j	ENSGT00590000083139.d.b.fb.a	ENSGT00940000154645.A.i	ENSGT00940000155646.n.a	ENSGT00940000155086.B.c	ENSGT00940000166976	ENSGT00530000063558.B.e #18	ENSGT00390000011877.b #20	ENSGT00390000013931.e #21	ENSGT01030000234626.B.qb #22	ENSGT00940000162166.g.a	ENSGT00940000160412.a.a	ENSGT00950000182963.a.a.k.b	ENSGT00530000063651.a.o.b	ENSGT01030000234667.b.f.a.c	ENSGT00390000007441.f	ENSGT00940000155671.y.b.a
Goldfish	MODERN SPECIES	12	cd164 (ENSCARG00000027140)	GRM1 (ENSCARG00000027150)	rab32a (ENSCARG00000027172)	ADGB (ENSCARG00000027197)	stxbp5a (ENSCARG00000027250)	sash1a (ENSCARG00000028744)	usta (ENSCARG00000028867)	slc22a16 (ENSCARG00000028907)	apobb.1 (ENSCARG00000028946)	hpcal1 (ENSCARG00000029173)	pdia6 (ENSCARG00000029220)	otofa (ENSCARG00000029670)	ENSCARG00000029838	sod2 (ENSCARG00000029851) #20	wtap (ENSCARG00000029872) #21	acat2 (ENSCARG00000029884) #22	KIF25 (ENSCARG00000030013)	hebp2 (ENSCARG00000030029)	NHSL1 (ENSCARG00000030063)	acbd3 (ENSCARG00000030113)	ccr6a (ENSCARG00000030132)	cep43 (ENSCARG00000030166)	ENSCARG00000030285	myt1la (ENSCARG00000030291)	atf6 (ENSCARG00000030397)	olfml2ba (ENSCARG00000030419)	fam102bb (ENSCARG00000030428)	henmt1 (ENSCARG00000030441)	ENSCARG00000030483	ROCK2 (ENSCARG00000030604)	ENSCARG00000031005
Cyprininae_a	ANCESTRAL SPECIES	127	ENSGT00940000162477.c.g.a	ENSGT00390000014904.e	ENSGT00950000182906.b.a.i.b.d	ENSGT00510000048701.a.d	ENSGT00940000156778.l.c	ENSGT00530000063408.A.l.a	ENSGT00940000160723.j	ENSGT00590000083139.d.b.fb.a	ENSGT00940000154645.A.i	ENSGT00940000155646.n.a	ENSGT00940000155086.B.c	ENSGT00940000166976	ENSGT00530000063558.B.e #18	ENSGT00390000011877.b #20	ENSGT00390000013931.e #21	ENSGT01030000234626.B.qb #22	ENSGT00940000162166.g.a	ENSGT00940000162166.h	ENSGT00940000160412.a.a	ENSGT00950000182963.a.a.k.b	ENSGT00530000063651.a.o.b	ENSGT01030000234667.b.f.a.c	ENSGT00390000007441.f	ENSGT00940000155671.y.b.a	ENSGT00390000003466.n	ENSGT00390000001793.c	ENSGT00940000161652.b.b.b.b.b	ENSGT00940000157701.f.a.a	ENSGT00940000156464.eb.a.b	ENSGT00940000156714.b.b	ENSGT01030000234564.a.a.a.a.b.b.f
Common carp reference	MODERN SPECIES	34	ENSCCRG00000032833	ADGB (ENSCCRG00000067547)	stxbp5a (ENSCCRG00000016687)	SAMD5 (ENSCCRG00000075853)	sash1a (ENSCCRG00000076668)	usta (ENSCCRG00000078488)	slc22a16 (ENSCCRG00000035150)	apobb.1 (ENSCCRG00000036877)	hpcal1 (ENSCCRG00000075624)	pdia6 (ENSCCRG00000081509)	otofa (ENSCCRG00000036895)	ENSCCRG00000072273	FNDC1 (ENSCCRG00000036913) #18	sod2 (ENSCCRG00000079233) #20	wtap (ENSCCRG00000061771) #21	acat2 (ENSCCRG00000072282) #22	ENSCCRG00000036974	ENSCCRG00000079447	acbd3 (ENSCCRG00000030468)	ccr6a (ENSCCRG00000079596)	cep43 (ENSCCRG00000004734)	myt1la (ENSCCRG00000004110)	rnaseh1 (ENSCCRG00000012828)	ENSCCRG00000061716	rps7 (ENSCCRG00000012830)	ENSCCRG00000070367	sox11b (ENSCCRG00000054079)	rnf144ab (ENSCCRG00000075326)	id2b (ENSCCRG00000061529)	kidins220b (ENSCCRG00000050138)	mboat2b (ENSCCRG00000049975)
Golden-line barbel	MODERN SPECIES	361								apobb.1 (ENSSGRG00000029494)	hpcal1 (ENSSGRG00000029484)	pdia6 (ENSSGRG00000029433)	otofa (ENSSGRG00000029285)	ENSSGRG00000029279	FNDC1 (ENSSGRG00000029278) #18	sod2 (ENSSGRG00000029276) #20	wtap (ENSSGRG00000029204) #21	acat2 (ENSSGRG00000029036) #22	KIF25 (ENSSGRG00000029034)	hebp2 (ENSSGRG00000029033)	NHSL1 (ENSSGRG00000029030)	acbd3 (ENSSGRG00000029022)	ccr6a (ENSSGRG00000029020)	cep43 (ENSSGRG00000029019)	myt1la (ENSSGRG00000028996)	rnaseh1 (ENSSGRG00000028989)	rps7 (ENSSGRG00000028981)	allc (ENSSGRG00000028980)	sox11b (ENSSGRG00000028979)	rnf144ab (ENSSGRG00000028975)	id2b (ENSSGRG00000028973)	kidins220b (ENSSGRG00000028621)	mboat2b (ENSSGRG00000028611)
Zebrafish	MODERN SPECIES	12	rab32a (ENSDARG00000029036)	ENSDARG00000110912	ADGB (ENSDARG00000005595)	stxbp5a (ENSDARG00000002656)	sash1a (ENSDARG00000007179)	usta (ENSDARG00000006044)	slc22a16 (ENSDARG00000015869)	apobb.1 (ENSDARG00000022767)	hpcal1 (ENSDARG00000022763)	pdia6 (ENSDARG00000009001)	otofa (ENSDARG00000030832)	ENSDARG00000089110	FNDC1 (ENSDARG00000002847) #18	sod2 (ENSDARG00000042644) #20	wtap (ENSDARG00000042642) #21	acat2 (ENSDARG00000007127) #22	KIF25 (ENSDARG00000017532)	hebp2 (ENSDARG00000042630)	NHSL1 (ENSDARG00000042627)	acbd3 (ENSDARG00000042623)	ccr6a (ENSDARG00000087474)	cep43 (ENSDARG00000003058)	myt1la (ENSDARG00000008209)	rnaseh1 (ENSDARG00000042571)	rps7 (ENSDARG00000042566)	allc (ENSDARG00000042562)	sox11b (ENSDARG00000095743)	rnf144ab (ENSDARG00000042557)	id2b (ENSDARG00000029544)	kidins220b (ENSDARG00000017338)	mboat2b (ENSDARG00000042551)
Euteleosteomorpha	ANCESTRAL SPECIES	19	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00950000182941.a.a.a.b	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c #10	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B
Acanthomorphata	ANCESTRAL SPECIES	59										ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT01030000234809
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Tiger tail seahorse	MODERN SPECIES	450	WDR20 (ENSHCOG00000014518)	mgat2 (ENSHCOG00000014525)	ENSHCOG00000014532	ENSHCOG00000014550	MDGA2 (ENSHCOG00000014586)	hsp90aa1.1 (ENSHCOG00000014614)	HSP90AA1 (ENSHCOG00000014636)	ppp2r5cb (ENSHCOG00000014671)	ENSHCOG00000014684	ENSHCOG00000000411	slc25a47a (ENSHCOG00000014703)	slc25a29 (ENSHCOG00000014732)	sod2 (ENSHCOG00000014748) #20	ENSHCOG00000014761 #21	wtap (ENSHCOG00000014785) #21	acat2 (ENSHCOG00000014816) #22	ENSHCOG00000014809	ENSHCOG00000014907	ENSHCOG00000014921	PLEKHG1 (ENSHCOG00000014925)	tcp1 (ENSHCOG00000014951) #23	smek1 (ENSHCOG00000014980)	mycn (ENSHCOG00000015013)	mrpl19 (ENSHCOG00000015019)	ENSHCOG00000015026	efhc1 (ENSHCOG00000015031)	tram2 (ENSHCOG00000015072)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Amazon molly	MODERN SPECIES	253	ppil6 (ENSPFOG00000019543)	cd164 (ENSPFOG00000019542)	cep57l1 (ENSPFOG00000019541)	sesn1 (ENSPFOG00000019540)	ARMC2 (ENSPFOG00000019538)	foxo3b (ENSPFOG00000019537)	afg1lb (ENSPFOG00000019535)	snx3 (ENSPFOG00000019534)	nr2e1 (ENSPFOG00000019532)	OSTM1 (ENSPFOG00000019529)	otofa (ENSPFOG00000019508)	otofa (ENSPFOG00000019457)	FNDC1 (ENSPFOG00000019433) #18	sod2 (ENSPFOG00000019429) #20	wtap (ENSPFOG00000019425) #21	acat2 (ENSPFOG00000019421) #22	tcp1 (ENSPFOG00000019417) #23	PLEKHG1 (ENSPFOG00000019410)	ENSPFOG00000020614	paplnb (ENSPFOG00000019407)	ENSPFOG00000019405	smek1 (ENSPFOG00000019400)	ENSPFOG00000019396	mycn (ENSPFOG00000019393)	ENSPFOG00000022923	mrpl19 (ENSPFOG00000019392)	ENSPFOG00000019390	efhc1 (ENSPFOG00000019386)	tram2 (ENSPFOG00000019383)	xkr5a (ENSPFOG00000019377)	ENSPFOG00000019374
Sailfin molly	MODERN SPECIES	2073													FNDC1 (ENSPLAG00000009939) #18	sod2 (ENSPLAG00000009968) #20	wtap (ENSPLAG00000009971) #21	acat2 (ENSPLAG00000000222) #22	tcp1 (ENSPLAG00000000657) #23
Guppy	MODERN SPECIES	452	ENSPREG00000004765	ppil6 (ENSPREG00000004785)	cep57l1 (ENSPREG00000004797)	sesn1 (ENSPREG00000004835)	ARMC2 (ENSPREG00000004984)	ENSPREG00000005022	foxo3b (ENSPREG00000005040)	afg1lb (ENSPREG00000005157)	snx3 (ENSPREG00000005216)	nr2e1 (ENSPREG00000005235)	OSTM1 (ENSPREG00000005263)	otofa (ENSPREG00000005299)	FNDC1 (ENSPREG00000005423) #18	sod2 (ENSPREG00000005529) #20	wtap (ENSPREG00000005555) #21	acat2 (ENSPREG00000005675) #22	tcp1 (ENSPREG00000005703) #23	ENSPREG00000005734	paplnb (ENSPREG00000005755)	ERH (ENSPREG00000005785)	smek1 (ENSPREG00000005878)	mycn (ENSPREG00000005916)	mrpl19 (ENSPREG00000005939)	ENSPREG00000005957	efhc1 (ENSPREG00000005975)	tram2 (ENSPREG00000005990)	xkr5a (ENSPREG00000006029)	ENSPREG00000006060	prep (ENSPREG00000006132)	lin28b (ENSPREG00000006170)	GRIK2 (ENSPREG00000006189)
Platyfish	MODERN SPECIES	6	ENSXMAG00000024566	ppil6 (ENSXMAG00000003243)	cd164 (ENSXMAG00000022598)	cep57l1 (ENSXMAG00000003254)	sesn1 (ENSXMAG00000028518)	ARMC2 (ENSXMAG00000003268)	foxo3 (ENSXMAG00000003269)	afg1lb (ENSXMAG00000003272)	snx3 (ENSXMAG00000003281)	nr2e1 (ENSXMAG00000003283)	OSTM1 (ENSXMAG00000029145)	otofa (ENSXMAG00000003300)	FNDC1 (ENSXMAG00000003322) #18	sod2 (ENSXMAG00000003325) #20	wtap (ENSXMAG00000003331) #21	acat2 (ENSXMAG00000003334) #22	tcp1 (ENSXMAG00000003351) #23	PLEKHG1 (ENSXMAG00000003360)	paplnb (ENSXMAG00000003371)	ENSXMAG00000029136	smek1 (ENSXMAG00000003375)	mycn (ENSXMAG00000003386)	mrpl19 (ENSXMAG00000003388)	ENSXMAG00000021325	efhc1 (ENSXMAG00000003396)	tram2 (ENSXMAG00000003399)	xkr5a (ENSXMAG00000003413)	ENSXMAG00000003417	prep (ENSXMAG00000003424)	lin28b (ENSXMAG00000003450)	GRIK2 (ENSXMAG00000003453)
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Mummichog	MODERN SPECIES	2240	ppil6 (ENSFHEG00000023323)	cd164 (ENSFHEG00000023325)	cep57l1 (ENSFHEG00000023326)	sesn1 (ENSFHEG00000023330)	ARMC2 (ENSFHEG00000023335)	foxo3b (ENSFHEG00000023338)	afg1lb (ENSFHEG00000023340)	snx3 (ENSFHEG00000023342)	nr2e1 (ENSFHEG00000023345)	OSTM1 (ENSFHEG00000023349)	ENSFHEG00000023352	ENSFHEG00000023354	FNDC1 (ENSFHEG00000023360) #18	sod2 (ENSFHEG00000023363) #20	wtap (ENSFHEG00000023365) #21	acat2 (ENSFHEG00000023174) #22	tcp1 (ENSFHEG00000023109) #23	PLEKHG1 (ENSFHEG00000023038)	paplnb (ENSFHEG00000023004)	ERH (ENSFHEG00000022994)	smek1 (ENSFHEG00000022980)	mycn (ENSFHEG00000022918)	mrpl19 (ENSFHEG00000022887)	ENSFHEG00000022847	efhc1 (ENSFHEG00000022840)	tram2 (ENSFHEG00000022697)	xkr5a (ENSFHEG00000022661)	ENSFHEG00000022651	prep (ENSFHEG00000022636)	lin28b (ENSFHEG00000022590)	GRIK2 (ENSFHEG00000022564)
Sheepshead minnow	MODERN SPECIES	150	ENSCVAG00000001660	ppil6 (ENSCVAG00000001664)	cd164 (ENSCVAG00000001666)	cep57l1 (ENSCVAG00000001671)	sesn1 (ENSCVAG00000001679)	ARMC2 (ENSCVAG00000001686)	foxo3b (ENSCVAG00000001690)	afg1lb (ENSCVAG00000001709)	snx3 (ENSCVAG00000001713)	nr2e1 (ENSCVAG00000001716)	OSTM1 (ENSCVAG00000001719)	otofa (ENSCVAG00000001740)	ENSCVAG00000001745 #18	sod2 (ENSCVAG00000001748) #20	wtap (ENSCVAG00000001753) #21	acat2 (ENSCVAG00000001762) #22	tcp1 (ENSCVAG00000001769) #23	PLEKHG1 (ENSCVAG00000001777)	paplnb (ENSCVAG00000001786)	ENSCVAG00000001791	smek1 (ENSCVAG00000001802)	mycn (ENSCVAG00000001807)	mrpl19 (ENSCVAG00000001815)	ENSCVAG00000001822	ENSCVAG00000001824	tram2 (ENSCVAG00000001838)	xkr5a (ENSCVAG00000001852)	ENSCVAG00000001859	prep (ENSCVAG00000001865)	lin28b (ENSCVAG00000001868)	GRIK2 (ENSCVAG00000001886)
Aplocheiloidei	ANCESTRAL SPECIES	27											ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Mangrove rivulus	MODERN SPECIES	20											ENSKMAG00000015262	otofa (ENSKMAG00000015305)	FNDC1 (ENSKMAG00000015455) #18	sod2 (ENSKMAG00000015554) #20	wtap (ENSKMAG00000015655) #21	acat2 (ENSKMAG00000015691) #22	tcp1 (ENSKMAG00000015727) #23	PLEKHG1 (ENSKMAG00000015816)	paplnb (ENSKMAG00000015873)	ERH (ENSKMAG00000015901)	smek1 (ENSKMAG00000015917)	mycn (ENSKMAG00000015950)	mrpl19 (ENSKMAG00000015967)	ENSKMAG00000015994	efhc1 (ENSKMAG00000016043)	tram2 (ENSKMAG00000016177)	xkr5a (ENSKMAG00000016226)	ENSKMAG00000016247	prep (ENSKMAG00000016265)	lin28b (ENSKMAG00000016334)	GRIK2 (ENSKMAG00000016401)
Oryzias	ANCESTRAL SPECIES	19	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Indian medaka	MODERN SPECIES	22	ENSOMEG00000007777	ENSOMEG00000007768	EFR3B (ENSOMEG00000007711)	sesn1 (ENSOMEG00000007536)	ENSOMEG00000007473	foxo3b (ENSOMEG00000007462)	afg1lb (ENSOMEG00000007445)	snx3 (ENSOMEG00000007412)	nr2e1 (ENSOMEG00000007396)	OSTM1 (ENSOMEG00000007371)	ENSOMEG00000007358	otofa (ENSOMEG00000007326)	FNDC1 (ENSOMEG00000007225) #18	sod2 (ENSOMEG00000006930) #20	wtap (ENSOMEG00000006907) #21	acat2 (ENSOMEG00000006874) #22	tcp1 (ENSOMEG00000006853) #23	PLEKHG1 (ENSOMEG00000006809)	paplnb (ENSOMEG00000006760)	ENSOMEG00000006737	ERH (ENSOMEG00000006713)	smek1 (ENSOMEG00000006704)	mycn (ENSOMEG00000000785)	mrpl19 (ENSOMEG00000006661)	ENSOMEG00000006632	efhc1 (ENSOMEG00000006600)	tram2 (ENSOMEG00000006582)	xkr5a (ENSOMEG00000006544)	ENSOMEG00000006502	prep (ENSOMEG00000006468)	lin28b (ENSOMEG00000006425)
Javanese ricefish	MODERN SPECIES	16	ENSOJAG00000017068	EFR3B (ENSOJAG00000016735)	ENSOJAG00000016707	sesn1 (ENSOJAG00000016607)	ARMC2 (ENSOJAG00000016586)	foxo3b (ENSOJAG00000016575)	afg1lb (ENSOJAG00000016467)	snx3 (ENSOJAG00000016432)	nr2e1 (ENSOJAG00000016346)	OSTM1 (ENSOJAG00000016324)	ENSOJAG00000016316	otofa (ENSOJAG00000015846)	ENSOJAG00000015626 #18	sod2 (ENSOJAG00000015572) #20	wtap (ENSOJAG00000015544) #21	acat2 (ENSOJAG00000015488) #22	tcp1 (ENSOJAG00000015426) #23	ENSOJAG00000015416	PLEKHG1 (ENSOJAG00000023344)	paplnb (ENSOJAG00000023337)	ERH (ENSOJAG00000023329)	smek1 (ENSOJAG00000023298)	mycn (ENSOJAG00000023283)	mrpl19 (ENSOJAG00000023277)	ENSOJAG00000023270	efhc1 (ENSOJAG00000023264)	tram2 (ENSOJAG00000023245)	xkr5a (ENSOJAG00000023230)	ENSOJAG00000023216	prep (ENSOJAG00000023160)	lin28b (ENSOJAG00000023134)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Japanese Medaka HdrR	MODERN SPECIES	16	parp1 (ENSORLG00000013691)	ENSORLG00000013598	EFR3B (ENSORLG00000013543)	sesn1 (ENSORLG00000013484)	ARMC2 (ENSORLG00000013466)	foxo3b (ENSORLG00000013450)	afg1lb (ENSORLG00000013445)	snx3 (ENSORLG00000013433)	nr2e1 (ENSORLG00000013426)	OSTM1 (ENSORLG00000013403)	ENSORLG00000026052	otofa (ENSORLG00000013388)	FNDC1 (ENSORLG00000013281) #18	sod2 (ENSORLG00000013261) #20	wtap (ENSORLG00000013240) #21	acat2 (ENSORLG00000013226) #22	tcp1 (ENSORLG00000013195) #23	PLEKHG1 (ENSORLG00000013150)	paplnb (ENSORLG00000013108)	ERH (ENSORLG00000028815)	smek1 (ENSORLG00000013092)	mycn (ENSORLG00000022362)	mrpl19 (ENSORLG00000013027)	ENSORLG00000013000	efhc1 (ENSORLG00000012981)	tram2 (ENSORLG00000012971)	xkr5a (ENSORLG00000012952)	prdm1c (ENSORLG00000012948)	prep (ENSORLG00000012934)	lin28b (ENSORLG00000012891)	GRIK2 (ENSORLG00000012884)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pomacentridae	ANCESTRAL SPECIES	34												ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Amphiprion	ANCESTRAL SPECIES	55	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Clown anemonefish	MODERN SPECIES	1408										pigh (ENSAOCG00000011836)	ZFYVE1 (ENSAOCG00000011802)	otofa (ENSAOCG00000011718)	FNDC1 (ENSAOCG00000011580) #18	sod2 (ENSAOCG00000011525) #20	wtap (ENSAOCG00000011495) #21	acat2 (ENSAOCG00000011461) #22	tcp1 (ENSAOCG00000011419) #23	ENSAOCG00000011356	paplnb (ENSAOCG00000011325)	ERH (ENSAOCG00000011284)	smek1 (ENSAOCG00000011257)
Orange clownfish	MODERN SPECIES	2	slc25a29 (ENSAPEG00000023144)	ENSAPEG00000023138	vrtn (ENSAPEG00000023134)	syndig1l (ENSAPEG00000023081)	dll4 (ENSAPEG00000023015)	chac1 (ENSAPEG00000022979)	ino80 (ENSAPEG00000022911)	vps18 (ENSAPEG00000022883)	rhov (ENSAPEG00000022872)	pigh (ENSAPEG00000022860)	ZFYVE1 (ENSAPEG00000022833)	otofa (ENSAPEG00000022763)	ENSAPEG00000022735 #18	sod2 (ENSAPEG00000022721) #20	wtap (ENSAPEG00000022698) #21	acat2 (ENSAPEG00000022680) #22	tcp1 (ENSAPEG00000022617) #23	ENSAPEG00000022606	paplnb (ENSAPEG00000022586)	ERH (ENSAPEG00000022577)	smek1 (ENSAPEG00000022492)	mycn (ENSAPEG00000022477)	mrpl19 (ENSAPEG00000022446)	ENSAPEG00000022432	ENSAPEG00000022427	efhc1 (ENSAPEG00000022192)	tram2 (ENSAPEG00000022143)	xkr5a (ENSAPEG00000022118)	ENSAPEG00000022096	prep (ENSAPEG00000022083)	ENSAPEG00000022072
Spiny chromis	MODERN SPECIES	1220													FNDC1 (ENSAPOG00000004149) #18	sod2 (ENSAPOG00000004182) #20	wtap (ENSAPOG00000004201) #21	acat2 (ENSAPOG00000004232) #22	tcp1 (ENSAPOG00000004288) #23	PLEKHG1 (ENSAPOG00000004322)
Bicolor damselfish	MODERN SPECIES	1325												otofa (ENSSPAG00000011816)	FNDC1 (ENSSPAG00000011652) #18	sod2 (ENSSPAG00000011621) #20	wtap (ENSSPAG00000011600) #21	acat2 (ENSSPAG00000011575) #22	tcp1 (ENSSPAG00000011506) #23	PLEKHG1 (ENSSPAG00000011477)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	615	ENSPNYG00000023418	ENSPNYG00000023417	ENSPNYG00000023415	ENSPNYG00000023412	ENSPNYG00000023410	ENSPNYG00000023409	ENSPNYG00000023407	ENSPNYG00000023406	ENSPNYG00000023405	ENSPNYG00000023404	ENSPNYG00000023403	ENSPNYG00000023402	ENSPNYG00000023400	ENSPNYG00000023399	ENSPNYG00000023398	acat2 (ENSPNYG00000023397) #22	ENSPNYG00000023395	ENSPNYG00000023393	ENSPNYG00000023392	ENSPNYG00000023390	ENSPNYG00000023389	ENSPNYG00000023386	ENSPNYG00000023384	ENSPNYG00000023383	ENSPNYG00000023381	ENSPNYG00000023379	ENSPNYG00000023378	ENSPNYG00000023377	ENSPNYG00000023375	ENSPNYG00000023372	ENSPNYG00000023371
P. nyererei	MODERN SPECIES	336	cep57l1 (ENSPNYG00000022144)	sesn1 (ENSPNYG00000022168)	ARMC2 (ENSPNYG00000022190)	ENSPNYG00000022211	foxo3b (ENSPNYG00000022219)	afg1lb (ENSPNYG00000022230)	snx3 (ENSPNYG00000022249)	nr2e1 (ENSPNYG00000022258)	OSTM1 (ENSPNYG00000022269)	drc1 (ENSPNYG00000022285)	otofa (ENSPNYG00000022307)	ENSPNYG00000022331	ENSPNYG00000022334 #18	sod2 (ENSPNYG00000022342) #20	wtap (ENSPNYG00000022353) #21	acat2 (ENSPNYG00000022364) #22	tcp1 (ENSPNYG00000022378) #23	ENSPNYG00000022434	ENSPNYG00000022442	paplnb (ENSPNYG00000022451)	ENSPNYG00000022461	smek1 (ENSPNYG00000022476)	mycn (ENSPNYG00000022509)	mrpl19 (ENSPNYG00000022512)	ENSPNYG00000022518	efhc1 (ENSPNYG00000022525)	tram2 (ENSPNYG00000022540)	xkr5a (ENSPNYG00000022559)	ENSPNYG00000022569	prep (ENSPNYG00000022582)	lin28b (ENSPNYG00000022590)
Haplochromini_B	ANCESTRAL SPECIES	34	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT01100000263664.b.b	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Zebra mbuna	MODERN SPECIES	1097	sesn1 (ENSMZEG00005018077)	ARMC2 (ENSMZEG00005018080)	ENSMZEG00005018083	ENSMZEG00005018086	foxo3b (ENSMZEG00005018088)	afg1lb (ENSMZEG00005018089)	snx3 (ENSMZEG00005018091)	nr2e1 (ENSMZEG00005018093)	OSTM1 (ENSMZEG00005018095)	ENSMZEG00005018096	otofa (ENSMZEG00005018102)	FNDC1 (ENSMZEG00005018113) #18	ENSMZEG00005018117	sod2 (ENSMZEG00005018119) #20	wtap (ENSMZEG00005018121) #21	acat2 (ENSMZEG00005018127) #22	tcp1 (ENSMZEG00005018125) #23	PLEKHG1 (ENSMZEG00005018138)	paplnb (ENSMZEG00005018145)	ENSMZEG00005018146	smek1 (ENSMZEG00005018149)	mycn (ENSMZEG00005018153)	mrpl19 (ENSMZEG00005018154)	ENSMZEG00005018157	efhc1 (ENSMZEG00005018159)	tram2 (ENSMZEG00005018161)	xkr5a (ENSMZEG00005018164)	ENSMZEG00005018167	prep (ENSMZEG00005018171)	lin28b (ENSMZEG00005018178)	ENSMZEG00005018179
Eastern happy	MODERN SPECIES	6	cep57l1 (ENSACLG00000020390)	sesn1 (ENSACLG00000020406)	ARMC2 (ENSACLG00000020440)	foxo3b (ENSACLG00000020458)	afg1lb (ENSACLG00000020466)	snx3 (ENSACLG00000020523)	nr2e1 (ENSACLG00000020548)	OSTM1 (ENSACLG00000020598)	ENSACLG00000020606	otofa (ENSACLG00000020643)	FNDC1 (ENSACLG00000020762) #18	ENSACLG00000020851	ENSACLG00000020862	sod2 (ENSACLG00000020876) #20	wtap (ENSACLG00000020899) #21	acat2 (ENSACLG00000020918) #22	tcp1 (ENSACLG00000020965) #23	PLEKHG1 (ENSACLG00000021076)	paplnb (ENSACLG00000021209)	ENSACLG00000021247	smek1 (ENSACLG00000021261)	mycn (ENSACLG00000021336)	mrpl19 (ENSACLG00000021351)	ENSACLG00000021389	efhc1 (ENSACLG00000021421)	tram2 (ENSACLG00000021448)	xkr5a (ENSACLG00000021490)	ENSACLG00000021497	prep (ENSACLG00000021516)	lin28b (ENSACLG00000021564)	ENSACLG00000021584
Burton s mouthbrooder	MODERN SPECIES	312			sesn1 (ENSHBUG00000013443)	ARMC2 (ENSHBUG00000000398)	foxo3b (ENSHBUG00000000399)	afg1lb (ENSHBUG00000013479)	snx3 (ENSHBUG00000013497)	nr2e1 (ENSHBUG00000013534)	OSTM1 (ENSHBUG00000013547)	drc1 (ENSHBUG00000013557)	otofa (ENSHBUG00000013680)	ENSHBUG00000013701	FNDC1 (ENSHBUG00000013724) #18	sod2 (ENSHBUG00000013750) #20	wtap (ENSHBUG00000001138) #21	acat2 (ENSHBUG00000013808) #22	tcp1 (ENSHBUG00000013899) #23	PLEKHG1 (ENSHBUG00000013918)	paplnb (ENSHBUG00000013931)	ENSHBUG00000013942	smek1 (ENSHBUG00000014012)	mycn (ENSHBUG00000014040)	mrpl19 (ENSHBUG00000014044)	ENSHBUG00000014054	efhc1 (ENSHBUG00000014062)	tram2 (ENSHBUG00000014095)	xkr5a (ENSHBUG00000014101)	ENSHBUG00000014127	prep (ENSHBUG00000014169)	lin28b (ENSHBUG00000014195)	GRIK2 (ENSHBUG00000014232)
Lyretail cichlid	MODERN SPECIES	314	cep57l1 (ENSNBRG00000019258)	sesn1 (ENSNBRG00000019292)	ARMC2 (ENSNBRG00000019334)	foxo3b (ENSNBRG00000019364)	afg1lb (ENSNBRG00000019375)	snx3 (ENSNBRG00000019406)	nr2e1 (ENSNBRG00000019443)	OSTM1 (ENSNBRG00000019471)	ENSNBRG00000019483	otofa (ENSNBRG00000019524)	ENSNBRG00000019637 #18	ENSNBRG00000019648	ENSNBRG00000019660 #18	sod2 (ENSNBRG00000019677) #20	wtap (ENSNBRG00000019705) #21	acat2 (ENSNBRG00000019737) #22	tcp1 (ENSNBRG00000019787) #23	ENSNBRG00000019846	paplnb (ENSNBRG00000019859)	ENSNBRG00000019894	smek1 (ENSNBRG00000019921)	mycn (ENSNBRG00000019959)	mrpl19 (ENSNBRG00000019970)	ENSNBRG00000019983	efhc1 (ENSNBRG00000019997)	tram2 (ENSNBRG00000020036)	xkr5a (ENSNBRG00000020053)	ENSNBRG00000020082	prep (ENSNBRG00000020096)	lin28b (ENSNBRG00000020118)	GRIK2 (ENSNBRG00000020131)
Nile tilapia	MODERN SPECIES	6	ENSONIG00000035914	cd164 (ENSONIG00000028394)	cep57l1 (ENSONIG00000013303)	sesn1 (ENSONIG00000013301)	ARMC2 (ENSONIG00000013293)	foxo3b (ENSONIG00000013292)	afg1lb (ENSONIG00000013289)	snx3 (ENSONIG00000013287)	nr2e1 (ENSONIG00000013281)	OSTM1 (ENSONIG00000013278)	ENSONIG00000013276	otofa (ENSONIG00000013269)	FNDC1 (ENSONIG00000013266) #18	sod2 (ENSONIG00000013263) #20	wtap (ENSONIG00000013259) #21	acat2 (ENSONIG00000013255) #22	tcp1 (ENSONIG00000013244) #23	PLEKHG1 (ENSONIG00000013238)	paplnb (ENSONIG00000014740)	ENSONIG00000027132	smek1 (ENSONIG00000014737)	mycn (ENSONIG00000014735)	mrpl19 (ENSONIG00000014731)	ENSONIG00000014730	efhc1 (ENSONIG00000014725)	tram2 (ENSONIG00000014718)	xkr5a (ENSONIG00000014716)	ENSONIG00000014709	prep (ENSONIG00000014707)	lin28b (ENSONIG00000014706)	GRIK2 (ENSONIG00000014701)
Midas cichlid	MODERN SPECIES	271	ppil6 (ENSACIG00000008390)	cd164 (ENSACIG00000008424)	cep57l1 (ENSACIG00000008438)	sesn1 (ENSACIG00000008468)	ARMC2 (ENSACIG00000008500)	foxo3b (ENSACIG00000008588)	afg1lb (ENSACIG00000008668)	snx3 (ENSACIG00000008723)	nr2e1 (ENSACIG00000008784)	OSTM1 (ENSACIG00000008805)	ENSACIG00000008830	otofa (ENSACIG00000008893)	FNDC1 (ENSACIG00000008997) #18	sod2 (ENSACIG00000009132) #20	wtap (ENSACIG00000009155) #21	acat2 (ENSACIG00000009288) #22	tcp1 (ENSACIG00000009317) #23	ENSACIG00000009358	paplnb (ENSACIG00000009378)	ENSACIG00000009424	smek1 (ENSACIG00000009497)	mycn (ENSACIG00000009541)	mrpl19 (ENSACIG00000009562)	ENSACIG00000009580	ENSACIG00000009591	efhc1 (ENSACIG00000009608)	tram2 (ENSACIG00000009677)	xkr5a (ENSACIG00000009725)	ENSACIG00000009747	prep (ENSACIG00000009776)	lin28b (ENSACIG00000009818)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a.k	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Tongue sole	MODERN SPECIES	17	hsp90aa1.1 (ENSCSEG00000000594)	hsp90aa1.2 (ENSCSEG00000000515)	ppp2r5cb (ENSCSEG00000000502)	DIO3 (ENSCSEG00000000497)	slc25a47a (ENSCSEG00000000494)	slc25a29 (ENSCSEG00000000487)	vrtn (ENSCSEG00000000482)	ENSCSEG00000000478	dll4 (ENSCSEG00000000474)	chac1 (ENSCSEG00000000472)	ENSCSEG00000000466	otofa (ENSCSEG00000000441)	ENSCSEG00000000434 #18	sod2 (ENSCSEG00000000427) #20	wtap (ENSCSEG00000000408) #21	acat2 (ENSCSEG00000000403) #22	tcp1 (ENSCSEG00000000387) #23	efhc1 (ENSCSEG00000000379)	efhc1 (ENSCSEG00000000362)	ENSCSEG00000000354	mrpl19 (ENSCSEG00000000349)	mycn (ENSCSEG00000000346)	smek1 (ENSCSEG00000000332)	ENSCSEG00000000321	paplnb (ENSCSEG00000000314)	lin28b (ENSCSEG00000000312)	prep (ENSCSEG00000000307)	ENSCSEG00000000305	xkr5a (ENSCSEG00000000301)	tram2 (ENSCSEG00000000292)	PLEKHG1 (ENSCSEG00000000275)
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000180577	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Greater amberjack	MODERN SPECIES	10	ppil6 (ENSSDUG00000019625)	cd164 (ENSSDUG00000019642)	cep57l1 (ENSSDUG00000019647)	sesn1 (ENSSDUG00000019665)	ARMC2 (ENSSDUG00000019699)	foxo3b (ENSSDUG00000019718)	afg1lb (ENSSDUG00000019727)	snx3 (ENSSDUG00000019760)	nr2e1 (ENSSDUG00000019776)	OSTM1 (ENSSDUG00000019798)	drc1 (ENSSDUG00000019839)	otofa (ENSSDUG00000019875)	FNDC1 (ENSSDUG00000019950) #18	sod2 (ENSSDUG00000020057) #20	wtap (ENSSDUG00000020070) #21	acat2 (ENSSDUG00000000092) #22	tcp1 (ENSSDUG00000000173) #23	PLEKHG1 (ENSSDUG00000000241)	ENSSDUG00000000256	paplnb (ENSSDUG00000000272)	ENSSDUG00000000320	smek1 (ENSSDUG00000000333)	ENSSDUG00000000392	mycn (ENSSDUG00000000413)	mrpl19 (ENSSDUG00000000420)	efhc1 (ENSSDUG00000000447)	tram2 (ENSSDUG00000000462)	xkr5a (ENSSDUG00000000511)	ENSSDUG00000000524	prep (ENSSDUG00000000552)	lin28b (ENSSDUG00000000613)
Yellowtail amberjack	MODERN SPECIES	2272													FNDC1 (ENSSLDG00000005130) #18	sod2 (ENSSLDG00000005197) #20	wtap (ENSSLDG00000005241) #21	acat2 (ENSSLDG00000005309) #22	tcp1 (ENSSLDG00000005262) #23	PLEKHG1 (ENSSLDG00000005370)
Barramundi perch	MODERN SPECIES	66										drc1 (ENSLCAG00010018869)	ENSLCAG00010018863	otofa (ENSLCAG00010018817)	FNDC1 (ENSLCAG00010018791) #18	sod2 (ENSLCAG00010018771) #20	wtap (ENSLCAG00010018762) #21	acat2 (ENSLCAG00010018750) #22	tcp1 (ENSLCAG00010018702) #23	PLEKHG1 (ENSLCAG00010018681)	paplnb (ENSLCAG00010018672)	ENSLCAG00010018662	smek1 (ENSLCAG00010018636)	ENSLCAG00010018621	ENSLCAG00010018617	mrpl19 (ENSLCAG00010018614)	ENSLCAG00010018604	efhc1 (ENSLCAG00010018596)	tram2 (ENSLCAG00010018539)	xkr5a (ENSLCAG00010018520)	ENSLCAG00010018515	prep (ENSLCAG00010018417)	lin28b (ENSLCAG00010018392)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Climbing perch	MODERN SPECIES	15	PPIL6 (ENSATEG00000013027)	cd164 (ENSATEG00000013091)	cep57l1 (ENSATEG00000013115)	sesn1 (ENSATEG00000013150)	ARMC2 (ENSATEG00000013216)	foxo3b (ENSATEG00000013282)	afg1lb (ENSATEG00000013291)	snx3 (ENSATEG00000028012)	nr2e1 (ENSATEG00000013336)	OSTM1 (ENSATEG00000013366)	ENSATEG00000013422	otofa (ENSATEG00000013468)	FNDC1 (ENSATEG00000025404) #18	sod2 (ENSATEG00000013630) #20	wtap (ENSATEG00000013657) #21	acat2 (ENSATEG00000013681) #22	TCP1 (ENSATEG00000013715) #23	ENSATEG00000013758	paplnb (ENSATEG00000013766)	ENSATEG00000026335	ENSATEG00000013845	mycn (ENSATEG00000029948)	ENSATEG00000013886	ENSATEG00000027883	ENSATEG00000013913	tram2 (ENSATEG00000013975)	xkr5a (ENSATEG00000014004)	ENSATEG00000014034	prep (ENSATEG00000014056)	ENSATEG00000014088	ENSATEG00000014169
Zig-zag eel	MODERN SPECIES	16	PPIL6 (ENSMAMG00000007446)	cd164 (ENSMAMG00000007441)	cep57l1 (ENSMAMG00000007432)	sesn1 (ENSMAMG00000007399)	ARMC2 (ENSMAMG00000007384)	foxo3b (ENSMAMG00000007377)	afg1lb (ENSMAMG00000025589)	snx3 (ENSMAMG00000007349)	nr2e1 (ENSMAMG00000007321)	OSTM1 (ENSMAMG00000007316)	ENSMAMG00000007292	otofa (ENSMAMG00000007209)	FNDC1 (ENSMAMG00000007183) #18	sod2 (ENSMAMG00000007154) #20	wtap (ENSMAMG00000027304) #21	acat2 (ENSMAMG00000007108) #22	TCP1 (ENSMAMG00000007085) #23	ENSMAMG00000007068	paplnb (ENSMAMG00000007053)	ENSMAMG00000006967	ENSMAMG00000006925	mycn (ENSMAMG00000006908)	ENSMAMG00000006902	ENSMAMG00000006878	efhc1 (ENSMAMG00000006869)	tram2 (ENSMAMG00000024315)	xkr5a (ENSMAMG00000006796)	ENSMAMG00000006790	prep (ENSMAMG00000006757)	ENSMAMG00000006635	ENSMAMG00000006597
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00990000211308	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Tetraodon	MODERN SPECIES	5	ppil6 (ENSTNIG00000012274)	cd164 (ENSTNIG00000012275)	cep57l1 (ENSTNIG00000012276)	sesn1 (ENSTNIG00000012277)	ARMC2 (ENSTNIG00000012278)	ENSTNIG00000012279	afg1lb (ENSTNIG00000012280)	snx3 (ENSTNIG00000012281)	nr2e1 (ENSTNIG00000012282)	ENSTNIG00000012283	otofa (ENSTNIG00000012284)	ENSTNIG00000012285 #18	ENSTNIG00000012286 #18	sod2 (ENSTNIG00000012287) #20	wtap (ENSTNIG00000012288) #21	acat2 (ENSTNIG00000012289) #22	tcp1 (ENSTNIG00000012290) #23	PLEKHG1 (ENSTNIG00000012291)	ENSTNIG00000012292	ENSTNIG00000012293	mycn (ENSTNIG00000012294)	mrpl19 (ENSTNIG00000012295)	ENSTNIG00000012296	efhc1 (ENSTNIG00000012297)	tram2 (ENSTNIG00000012298)	xkr5a (ENSTNIG00000012299)	ENSTNIG00000012300	ENSTNIG00000001052	prep (ENSTNIG00000012301)	lin28b (ENSTNIG00000012302)	GRIK2 (ENSTNIG00000012303)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Ballan wrasse	MODERN SPECIES	52	cd164 (ENSLBEG00000014634)	cep57l1 (ENSLBEG00000014613)	sesn1 (ENSLBEG00000014585)	ENSLBEG00000014553	ARMC2 (ENSLBEG00000014525)	foxo3b (ENSLBEG00000014513)	afg1lb (ENSLBEG00000014493)	snx3 (ENSLBEG00000014465)	nr2e1 (ENSLBEG00000014424)	OSTM1 (ENSLBEG00000014388)	ENSLBEG00000014359	otofa (ENSLBEG00000014067)	ENSLBEG00000013873 #18	sod2 (ENSLBEG00000013851) #20	wtap (ENSLBEG00000013802) #21	acat2 (ENSLBEG00000013733) #22	ENSLBEG00000013623 #23	tcp1 (ENSLBEG00000013564) #23	PLEKHG1 (ENSLBEG00000013520)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Perciformes	ANCESTRAL SPECIES	14	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pike perch	MODERN SPECIES	4	ppil6 (ENSSLUG00000007643)	cd164 (ENSSLUG00000007638)	cep57l1 (ENSSLUG00000007623)	sesn1 (ENSSLUG00000007600)	ARMC2 (ENSSLUG00000007561)	foxo3b (ENSSLUG00000007540)	afg1lb (ENSSLUG00000007525)	snx3 (ENSSLUG00000007519)	nr2e1 (ENSSLUG00000007504)	OSTM1 (ENSSLUG00000007499)	drc1 (ENSSLUG00000007488)	otofa (ENSSLUG00000006951)	FNDC1 (ENSSLUG00000006833) #18	sod2 (ENSSLUG00000006819) #20	wtap (ENSSLUG00000006806) #21	acat2 (ENSSLUG00000006773) #22	tcp1 (ENSSLUG00000006740) #23	PLEKHG1 (ENSSLUG00000006706)	paplnb (ENSSLUG00000006688)	ENSSLUG00000006670	smek1 (ENSSLUG00000006567)	mycn (ENSSLUG00000006464)	mrpl19 (ENSSLUG00000006444)	ENSSLUG00000006429	efhc1 (ENSSLUG00000006412)	tram2 (ENSSLUG00000006387)	xkr5a (ENSSLUG00000006372)	ENSSLUG00000006356	prep (ENSSLUG00000006096)	lin28b (ENSSLUG00000006062)	GRIK2 (ENSSLUG00000005914)
Channel bull blenny	MODERN SPECIES	16	ppil6 (ENSCGOG00000006022)	cd164 (ENSCGOG00000006021)	cep57l1 (ENSCGOG00000006019)	sesn1 (ENSCGOG00000006017)	ARMC2 (ENSCGOG00000006007)	foxo3b (ENSCGOG00000006004)	afg1lb (ENSCGOG00000005998)	snx3 (ENSCGOG00000005941)	nr2e1 (ENSCGOG00000005949)	ENSCGOG00000005938	drc1 (ENSCGOG00000005935)	otofa (ENSCGOG00000005248)	FNDC1 (ENSCGOG00000005216) #18	sod2 (ENSCGOG00000005042) #20	wtap (ENSCGOG00000004978) #21	acat2 (ENSCGOG00000004647) #22	tcp1 (ENSCGOG00000003796) #23	PLEKHG1 (ENSCGOG00000003765)	paplnb (ENSCGOG00000003759)	ENSCGOG00000003736	smek1 (ENSCGOG00000002846)	mycn (ENSCGOG00000024712)	mrpl19 (ENSCGOG00000024711)	ENSCGOG00000024710	efhc1 (ENSCGOG00000024709)	tram2 (ENSCGOG00000024708)	xkr5a (ENSCGOG00000024706)	ENSCGOG00000024705	prep (ENSCGOG00000024704)	lin28b (ENSCGOG00000024703)	GRIK2 (ENSCGOG00000024687)
Cottioidei	ANCESTRAL SPECIES	25	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Lumpfish	MODERN SPECIES	16	ppil6 (ENSCLMG00005016579)	cd164 (ENSCLMG00005016582)	cep57l1 (ENSCLMG00005016585)	sesn1 (ENSCLMG00005016589)	ARMC2 (ENSCLMG00005016590)	ENSCLMG00005016591	foxo3b (ENSCLMG00005016594)	afg1lb (ENSCLMG00005016596)	snx3 (ENSCLMG00005016599)	nr2e1 (ENSCLMG00005016608)	OSTM1 (ENSCLMG00005016616)	otofa (ENSCLMG00005016621)	FNDC1 (ENSCLMG00005016626) #18	sod2 (ENSCLMG00005016631) #20	wtap (ENSCLMG00005016640) #21	acat2 (ENSCLMG00005016642) #22	tcp1 (ENSCLMG00005016643) #23	ENSCLMG00005016650	PLEKHG1 (ENSCLMG00005016652)	paplnb (ENSCLMG00005016654)	ENSCLMG00005016660	smek1 (ENSCLMG00005016666)	mycn (ENSCLMG00005016668)	mrpl19 (ENSCLMG00005016679)	ENSCLMG00005016681	ENSCLMG00005016683	efhc1 (ENSCLMG00005016685)	tram2 (ENSCLMG00005017015)	xkr5a (ENSCLMG00005017019)	ENSCLMG00005017020	prep (ENSCLMG00005017023)
Stickleback	MODERN SPECIES	18	GEN1 (ENSGACG00000008868)	ppil6 (ENSGACG00000008871)	cd164 (ENSGACG00000008876)	cep57l1 (ENSGACG00000008882)	sesn1 (ENSGACG00000008895)	ARMC2 (ENSGACG00000008903)	foxo3b (ENSGACG00000008910)	afg1lb (ENSGACG00000008916)	snx3 (ENSGACG00000008921)	nr2e1 (ENSGACG00000008934)	ENSGACG00000008950	otofa (ENSGACG00000008956)	FNDC1 (ENSGACG00000008978) #18	sod2 (ENSGACG00000009000) #20	wtap (ENSGACG00000009045) #21	acat2 (ENSGACG00000009052) #22	tcp1 (ENSGACG00000009066) #23	PLEKHG1 (ENSGACG00000009204)	ENSGACG00000009211	paplnb (ENSGACG00000009212)	ERH (ENSGACG00000009220)	smek1 (ENSGACG00000009228)	mycn (ENSGACG00000009241)	mrpl19 (ENSGACG00000009248)	ENSGACG00000009272	efhc1 (ENSGACG00000009276)	tram2 (ENSGACG00000009285)	xkr5a (ENSGACG00000009350)	ENSGACG00000009358	prep (ENSGACG00000009366)	lin28b (ENSGACG00000009428)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
European seabass	MODERN SPECIES	7	ENSDLAG00005030866	PPIL6 (ENSDLAG00005026853)	cep57l1 (ENSDLAG00005034480)	sesn1 (ENSDLAG00005020385)	ARMC2 (ENSDLAG00005020331)	foxo3b (ENSDLAG00005020324)	afg1lb (ENSDLAG00005020306)	snx3 (ENSDLAG00005029627)	nr2e1 (ENSDLAG00005020195)	OSTM1 (ENSDLAG00005020161)	ENSDLAG00005020122	otofa (ENSDLAG00005019390)	FNDC1 (ENSDLAG00005019303) #18	sod2 (ENSDLAG00005019276) #20	wtap (ENSDLAG00005019235) #21	acat2 (ENSDLAG00005019106) #22	TCP1 (ENSDLAG00005019069) #23	ENSDLAG00005019041	paplnb (ENSDLAG00005030947)	ENSDLAG00005027281	ENSDLAG00005018898	mycn (ENSDLAG00005026718)	ENSDLAG00005018839	ENSDLAG00005028887	efhc1 (ENSDLAG00005018822)	xkr5a (ENSDLAG00005029326)	ENSDLAG00005018660	ENSDLAG00005027424	ENSDLAG00005016885	ENSDLAG00005005046	ENSDLAG00005016828
Large yellow croaker	MODERN SPECIES	482	ppil6 (ENSLCRG00005007738)	cd164 (ENSLCRG00005007736)	cep57l1 (ENSLCRG00005007735)	sesn1 (ENSLCRG00005007734)	ARMC2 (ENSLCRG00005007733)	foxo3b (ENSLCRG00005007732)	afg1lb (ENSLCRG00005007731)	snx3 (ENSLCRG00005007729)	nr2e1 (ENSLCRG00005007723)	OSTM1 (ENSLCRG00005007722)	drc1 (ENSLCRG00005007721)	otofa (ENSLCRG00005007205)	FNDC1 (ENSLCRG00005007194) #18	sod2 (ENSLCRG00005007192) #20	wtap (ENSLCRG00005007191) #21	acat2 (ENSLCRG00005007190) #22	tcp1 (ENSLCRG00005007185) #23	PLEKHG1 (ENSLCRG00005007177)	paplnb (ENSLCRG00005007170)	ENSLCRG00005007167	ENSLCRG00005007166	smek1 (ENSLCRG00005007143)	mycn (ENSLCRG00005007105)	mrpl19 (ENSLCRG00005007103)	ENSLCRG00005007101	efhc1 (ENSLCRG00005007099)	tram2 (ENSLCRG00005006604)	xkr5a (ENSLCRG00005006598)	ENSLCRG00005006593	prep (ENSLCRG00005006387)	lin28b (ENSLCRG00005006382)
Gilthead seabream	MODERN SPECIES	14	ppil6 (ENSSAUG00010009611)	cd164 (ENSSAUG00010009609)	cep57l1 (ENSSAUG00010009608)	sesn1 (ENSSAUG00010009605)	ARMC2 (ENSSAUG00010009600)	foxo3b (ENSSAUG00010009595)	afg1lb (ENSSAUG00010009573)	snx3 (ENSSAUG00010009568)	nr2e1 (ENSSAUG00010009563)	OSTM1 (ENSSAUG00010009560)	drc1 (ENSSAUG00010009552)	otofa (ENSSAUG00010009331)	FNDC1 (ENSSAUG00010009326) #18	sod2 (ENSSAUG00010009320) #20	wtap (ENSSAUG00010009317) #21	acat2 (ENSSAUG00010008737) #22	tcp1 (ENSSAUG00010008729) #23	PLEKHG1 (ENSSAUG00010016638)	paplnb (ENSSAUG00010016633)	ERH (ENSSAUG00010016632)	smek1 (ENSSAUG00010015958)	mycn (ENSSAUG00010015944)	mrpl19 (ENSSAUG00010015939)	ENSSAUG00010015932	efhc1 (ENSSAUG00010015930)	tram2 (ENSSAUG00010015861)	xkr5a (ENSSAUG00010015857)	ENSSAUG00010015854	prep (ENSSAUG00010015819)	lin28b (ENSSAUG00010015808)	GRIK2 (ENSSAUG00010015544)
Pinecone sodierfish	MODERN SPECIES	16	cd164 (ENSMMDG00005002696)	cep57l1 (ENSMMDG00005002680)	sesn1 (ENSMMDG00005002663)	ARMC2 (ENSMMDG00005002639)	ENSMMDG00005002632	foxo3b (ENSMMDG00005002624)	afg1lb (ENSMMDG00005002572)	snx3 (ENSMMDG00005002559)	nr2e1 (ENSMMDG00005023129)	OSTM1 (ENSMMDG00005023128)	drc1 (ENSMMDG00005023125)	otofa (ENSMMDG00005023012)	FNDC1 (ENSMMDG00005022994) #18	sod2 (ENSMMDG00005022866) #20	wtap (ENSMMDG00005022860) #21	acat2 (ENSMMDG00005022853) #22	tcp1 (ENSMMDG00005022846) #23	PLEKHG1 (ENSMMDG00005022840)	paplnb (ENSMMDG00005022838)	ENSMMDG00005022836	smek1 (ENSMMDG00005022460)	mycn (ENSMMDG00005022449)	mrpl19 (ENSMMDG00005022448)	ENSMMDG00005022447	ENSMMDG00005022446	efhc1 (ENSMMDG00005022444)	tram2 (ENSMMDG00005022412)	xkr5a (ENSMMDG00005022407)	ENSMMDG00005022404	prep (ENSMMDG00005022389)	lin28b (ENSMMDG00005022386)
Cod	MODERN SPECIES	13	ENSGMOG00000007002	ENSGMOG00000013767	ENSGMOG00000013745	efhc1 (ENSGMOG00000013731)	ENSGMOG00000026789	ENSGMOG00000013706	mycn (ENSGMOG00000025424)	smek1 (ENSGMOG00000001099)	ENSGMOG00000001125	paplnb (ENSGMOG00000001137)	drc1 (ENSGMOG00000001177)	otofa (ENSGMOG00000001446)	FNDC1 (ENSGMOG00000001515) #18	sod2 (ENSGMOG00000001602) #20	wtap (ENSGMOG00000001613) #21	acat2 (ENSGMOG00000001630) #22	TCP1 (ENSGMOG00000001647) #23	ENSGMOG00000022936	OSTM1 (ENSGMOG00000016051)	nr2e1 (ENSGMOG00000016036)	snx3 (ENSGMOG00000016029)	afg1lb (ENSGMOG00000016004)	ENSGMOG00000024666	foxo3b (ENSGMOG00000035821)	ARMC2 (ENSGMOG00000005690)	sesn1 (ENSGMOG00000005675)	ENSGMOG00000022278	cep57l1 (ENSGMOG00000014394)	cd164 (ENSGMOG00000022181)	PPIL6 (ENSGMOG00000014325)	ENSGMOG00000014295
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2187																ENSOTSG00005020842 #22
Chinook salmon	MODERN SPECIES	2546																ENSOTSG00005018782 #22
Chinook salmon	MODERN SPECIES	2379																ENSOTSG00005021283 #22
Chinook salmon	MODERN SPECIES	2860																ENSOTSG00005021101 #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Huchen	MODERN SPECIES	11378																ENSHHUG00000015226 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Chinook salmon	MODERN SPECIES	2856																ENSOTSG00005021094 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Chinook salmon	MODERN SPECIES	2772																ENSOTSG00005019688 #22
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000156484.b.e.a	ENSGT00940000166633	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B.k #18	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B.ub #22	ENSGT00950000182941.a.a.a.b	ENSGT00940000167949	ENSGT00550000074878 #23	ENSGT00940000157723.q.a	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00740000115564
Salmoninae	ANCESTRAL SPECIES	56															ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #23	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00940000161401.m.a.b	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c
Huchen	MODERN SPECIES	3655															wtap (ENSHHUG00000050140) #21	acat2 (ENSHHUG00000050167) #22	tcp1 (ENSHHUG00000050195) #23	PLEKHG1 (ENSHHUG00000050243)
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000174827	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT00390000011892.g.b	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l #18	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #23	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000174827	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT00390000011892.g.b	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l #18	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #23	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.b	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000120004	KLHL29 (ENSSSAG00000066276)	atad2b (ENSSSAG00000062770)	ENSSSAG00000118824	ubxn2a (ENSSSAG00000084988)	mfsd2b (ENSSSAG00000062498)	cssa06h2orf44 (ENSSSAG00000062468)	fkbp1b (ENSSSAG00000097867)	mmut (ENSSSAG00000062142)	opn8b (ENSSSAG00000101895)	opn8a (ENSSSAG00000062094)	otofa (ENSSSAG00000061721)	ENSSSAG00000091891	FNDC1 (ENSSSAG00000008223) #18	wtap (ENSSSAG00000095056) #21	acat2 (ENSSSAG00000096175) #22	TCPA (ENSSSAG00000008240) #23	plekhg1 (ENSSSAG00000008287)	ostm1 (ENSSSAG00000008297)	ENSSSAG00000114269	nr2e1 (ENSSSAG00000090271)	snx3 (ENSSSAG00000110792)	lace1 (ENSSSAG00000008348)	ENSSSAG00000109266	foxo3b (ENSSSAG00000092355)	sesn1 (ENSSSAG00000008383)	cep57l1 (ENSSSAG00000008398)	cd164 (ENSSSAG00000098472)	PPIL6 (ENSSSAG00000109308)	AK9 (ENSSSAG00000008446)	FIG4 (ENSSSAG00000008552)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00440000033970.j	ENSGT00390000005826.a.b.h.b.b	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l #18	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #23	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000030287	KLHL29 (ENSOMYG00000030279)	ENSOMYG00000076604	ENSOMYG00000072966	ATAD2B (ENSOMYG00000030187)	UBXN2A (ENSOMYG00000029910)	mfsd2b (ENSOMYG00000029875)	wdcp (ENSOMYG00000029845)	fkbp1b (ENSOMYG00000029818)	opn8b (ENSOMYG00000029802)	opn8a (ENSOMYG00000060304)	otofa (ENSOMYG00000029543)	ENSOMYG00000070248	FNDC1 (ENSOMYG00000019136) #18	wtap (ENSOMYG00000019164) #21	acat2 (ENSOMYG00000019218) #22	TCP1 (ENSOMYG00000019333) #23	ENSOMYG00000049071	ENSOMYG00000072136	OSTM1 (ENSOMYG00000019402)	nr2e1 (ENSOMYG00000019420)	snx3 (ENSOMYG00000019434)	afg1lb (ENSOMYG00000019501)	foxo3b (ENSOMYG00000062959)	sesn1 (ENSOMYG00000008399)	cep57l1 (ENSOMYG00000008571)	cd164 (ENSOMYG00000008587)	PPIL6 (ENSOMYG00000008614)	ENSOMYG00000069564	AK9 (ENSOMYG00000008741)	FIG4 (ENSOMYG00000009720)
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00440000033970.j	ENSGT00390000005826.a.b.h.b.b	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l #18	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #23	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Coho salmon	MODERN SPECIES	13	ENSOKIG00005037007	ENSOKIG00005036988	KLHL29 (ENSOKIG00005036875)	ATAD2B (ENSOKIG00005034612)	UBXN2A (ENSOKIG00005034497)	mfsd2b (ENSOKIG00005034453)	wdcp (ENSOKIG00005034446)	ENSOKIG00005034442	fkbp1b (ENSOKIG00005034435)	opn8b (ENSOKIG00005034393)	opn8a (ENSOKIG00005034318)	otofa (ENSOKIG00005033769)	ENSOKIG00005033737	ENSOKIG00005033712 #18	wtap (ENSOKIG00005033642) #21	acat2 (ENSOKIG00005033499) #22	tcp1 (ENSOKIG00005033362) #23	PLEKHG1 (ENSOKIG00005033330)	OSTM1 (ENSOKIG00005033299)	nr2e1 (ENSOKIG00005033251)	snx3 (ENSOKIG00005033236)	afg1lb (ENSOKIG00005033050)	foxo3b (ENSOKIG00005033024)	sesn1 (ENSOKIG00005032944)	cep57l1 (ENSOKIG00005032917)	ENSOKIG00005032909	cd164 (ENSOKIG00005032898)	ppil6 (ENSOKIG00005032863)	AK9 (ENSOKIG00005032809)	FIG4 (ENSOKIG00005031318)	GPR6 (ENSOKIG00005031232)
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005023958	sash1a (ENSOTSG00005023959)	ENSOTSG00005023960	sesn1 (ENSOTSG00005023962)	cep57l1 (ENSOTSG00005023964)	cd164 (ENSOTSG00005023965)	ppil6 (ENSOTSG00005023966)	AK9 (ENSOTSG00005023967)	FIG4 (ENSOTSG00005023974)	ENSOTSG00005026615	cdc40 (ENSOTSG00005026617)	METTL24 (ENSOTSG00005027822)	ENSOTSG00005027823	ENSOTSG00005027826 #18	wtap (ENSOTSG00005027828) #21	acat2 (ENSOTSG00005027838) #22	tcp1 (ENSOTSG00005027849) #23	ENSOTSG00005027876	ENSOTSG00005027877	OSTM1 (ENSOTSG00005027879)	nr2e1 (ENSOTSG00005027881)	snx3 (ENSOTSG00005027886)	afg1lb (ENSOTSG00005027891)	foxo3b (ENSOTSG00005027893)	ENSOTSG00005027894	otofa (ENSOTSG00005027900)	opn8a (ENSOTSG00005028167)	opn8b (ENSOTSG00005028182)	fkbp1b (ENSOTSG00005028184)	wdcp (ENSOTSG00005028189)	mfsd2b (ENSOTSG00005028192)
Northern pike	MODERN SPECIES	17	dynlt1 (ENSELUG00000017953) #13	ENSELUG00000017945	ENSELUG00000029928	gtf2h5 (ENSELUG00000000724) #9	serac1 (ENSELUG00000017822) #8	myct1a (ENSELUG00000032763)	ENSELUG00000027437	esr1 (ENSELUG00000000670)	armt1 (ENSELUG00000000664)	ENSELUG00000029127	zbtb2b (ENSELUG00000000662)	ENSELUG00000017427	mthfd1l (ENSELUG00000017415)	stx11b.2 (ENSELUG00000017392)	STX11 (ENSELUG00000017388)	acat2 (ENSELUG00000017338) #22	tcp1 (ENSELUG00000017365) #23	PLEKHG1 (ENSELUG00000017280)	OSTM1 (ENSELUG00000017212)	nr2e1 (ENSELUG00000017172)	snx3 (ENSELUG00000017150)	afg1lb (ENSELUG00000017123)	foxo3b (ENSELUG00000017092)	ARMC2 (ENSELUG00000017071)	sesn1 (ENSELUG00000017036)	cep57l1 (ENSELUG00000016989)	cd164 (ENSELUG00000016948)	ppil6 (ENSELUG00000016932)	slc22a16 (ENSELUG00000016920)	METTL24 (ENSELUG00000016901)	ENSELUG00000028462
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	6																acat2 (ENSCMIG00000000048) #22
Elephant shark	MODERN SPECIES	1678																ENSCMIG00000013172 #22	ENSCMIG00000013173	dkk2 (ENSCMIG00000013175)	papss1 (ENSCMIG00000013272)	sgms2b (ENSCMIG00000013466)	ENSCMIG00000013474	IDUA (ENSCMIG00000013490)	slc26a1 (ENSCMIG00000013495)	rbp4l (ENSCMIG00000013498)	ENSCMIG00000013507	ENSCMIG00000013516	MYL5 (ENSCMIG00000013521)	nkx6.1 (ENSCMIG00000013524)	ENSCMIG00000013530	ENSCMIG00000013533	ENSCMIG00000013536
Elephant shark	MODERN SPECIES	1513	ENSCMIG00000000948	psma3 (ENSCMIG00000001027)	arid4a (ENSCMIG00000001314)	ENSCMIG00000001560	timm9 (ENSCMIG00000001565)	ENSCMIG00000001573	ENSCMIG00000001587	irf2bpl (ENSCMIG00000001619)	dact1 (ENSCMIG00000001648)	ENSCMIG00000001652	daam1b (ENSCMIG00000001686)	L3HYPDH (ENSCMIG00000001723)	jkamp (ENSCMIG00000001735)	ENSCMIG00000001750	ENSCMIG00000001771	acat2 (ENSCMIG00000001776) #22	LRFN5 (ENSCMIG00000001782)	gemin2 (ENSCMIG00000001812)	trappc6b (ENSCMIG00000001830)	pnn (ENSCMIG00000001851)	ENSCMIG00000001900	FBXO33 (ENSCMIG00000001932)	zgc:153383 (ENSCMIG00000001938)	ppp2r3c (ENSCMIG00000001986)	ENSCMIG00000002136	psma6 (ENSCMIG00000002150)	ENSCMIG00000002185	INSM2 (ENSCMIG00000002193)	RALGAPA1 (ENSCMIG00000002242)	brms1la (ENSCMIG00000002308)	MBIP (ENSCMIG00000002316)
Elephant shark	MODERN SPECIES	1666	ENSCMIG00000005950	MTRF1 (ENSCMIG00000005951)	rgcc (ENSCMIG00000005954)	vwa8 (ENSCMIG00000005995)	DGKH (ENSCMIG00000006217)	AKAP11 (ENSCMIG00000006334)	ENSCMIG00000006340	DNAJC15 (ENSCMIG00000006344)	ENOX1 (ENSCMIG00000006352)	wdfy2 (ENSCMIG00000006385)	ENSCMIG00000006436	serpine3 (ENSCMIG00000006536)	FAM124A (ENSCMIG00000006538)	ENSCMIG00000006554	rnaseh2b (ENSCMIG00000006591)	acat2 (ENSCMIG00000006595) #22
Elephant shark	MODERN SPECIES	1976																acat2 (ENSCMIG00000002596) #22