Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Glires	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Lagomorpha	ANCESTRAL SPECIES	64	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00940000156543
Rabbit	MODERN SPECIES	3	GTF2H5 (ENSOCUG00000025009) #7	ENSOCUG00000032034 #8	TULP4 (ENSOCUG00000001444) #9	ENSOCUG00000026411 #10	TMEM181 (ENSOCUG00000012985) #11	DYNLT1 (ENSOCUG00000013012) #12	SYTL3 (ENSOCUG00000003823) #13	EZR (ENSOCUG00000003829) #14	RSPH3 (ENSOCUG00000007210) #15	TAGAP (ENSOCUG00000000631) #16	ENSOCUG00000037278 #17	FNDC1 (ENSOCUG00000015039) #18	ENSOCUG00000024780 #19	WTAP (ENSOCUG00000035527) #20	TCP1 (ENSOCUG00000013847) #21	ACAT2 (ENSOCUG00000013836) #22	MRPL18 (ENSOCUG00000013858) #23	PNLDC1 (ENSOCUG00000013867) #24	MGRA (ENSOCUG00000001493) #25	IGF2R (ENSOCUG00000008785) #26	SLC22A1 (ENSOCUG00000002539) #27	SLC22A2 (ENSOCUG00000002542) #28	SLC22A3 (ENSOCUG00000004222) #29	ENSOCUG00000001766 #30	MAP3K4 (ENSOCUG00000017154) #31	ENSOCUG00000032142 #32	ENSOCUG00000033664 #33	ENSOCUG00000035966 #34	ENSOCUG00000025750 #35	ENSOCUG00000031144 #36	PACRG (ENSOCUG00000013289) #37
Pika	MODERN SPECIES	1991															WTAP (ENSOPRG00000003737) #20	ACAT2 (ENSOPRG00000003753) #22	TCP1 (ENSOPRG00000003775) #21	MRPL18 (ENSOPRG00000003798) #23	PNLDC1 (ENSOPRG00000003813) #24
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT01030000234985	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT01030000234985	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Snx9 (ENSCGRG00001001484)	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521)	ENSCGRG00001013373 #7	Tulp4 (ENSCGRG00001020408) #9	Tmem181a (ENSCGRG00001020931) #11	ENSCGRG00001024351 #12	Sytl3 (ENSCGRG00001021896) #13	Ezr (ENSCGRG00001022444) #14	ENSCGRG00001023672 #15	ENSCGRG00001002978 #16	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155)	Wtap (ENSCGRG00001003444) #20	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #21	Mrpl18 (ENSCGRG00001010667) #23	ENSCGRG00001007470 #24	Mas1 (ENSCGRG00001007652) #25	Igf2r (ENSCGRG00001022921) #26	Slc22a1 (ENSCGRG00001023484) #27	Slc22a2 (ENSCGRG00001023859) #28	Slc22a3 (ENSCGRG00001024404) #29	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #30	Map3k4 (ENSCGRG00001023770) #31	Agpat4 (ENSCGRG00001024340) #33	Prkn (ENSCGRG00001011980) #35	ENSCGRG00001009195
Chinese hamster chok1gshd	MODERN SPECIES	1	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521)	ENSCGRG00001013373 #7	Tulp4 (ENSCGRG00001020408) #9	Tmem181a (ENSCGRG00001020931) #11	ENSCGRG00001024351 #12	Sytl3 (ENSCGRG00001021896) #13	Ezr (ENSCGRG00001022444) #14	ENSCGRG00001023672 #15	ENSCGRG00001002978 #16	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155)	Wtap (ENSCGRG00001003444) #20	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #21	Mrpl18 (ENSCGRG00001010667) #23	ENSCGRG00001007470 #24	Mas1 (ENSCGRG00001007652) #25	Igf2r (ENSCGRG00001022921) #26	Slc22a1 (ENSCGRG00001023484) #27	Slc22a2 (ENSCGRG00001023859) #28	Slc22a3 (ENSCGRG00001024404) #29	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #30	Map3k4 (ENSCGRG00001023770) #31	Agpat4 (ENSCGRG00001024340) #33	Prkn (ENSCGRG00001011980) #35	ENSCGRG00001009195	Pacrg (ENSCGRG00001010865) #37
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	358	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727)	Gtf2h5 (ENSMOCG00000000992) #7	Tulp4 (ENSMOCG00000020984) #9	ENSMOCG00000013123 #11	ENSMOCG00000011752 #12	Sytl3 (ENSMOCG00000014797) #13	Ezr (ENSMOCG00000016414) #14	ENSMOCG00000018649 #15	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263)	Wtap (ENSMOCG00000015976) #20	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #21	Mrpl18 (ENSMOCG00000016680) #23	Pnldc1 (ENSMOCG00000014287) #24	Mas1 (ENSMOCG00000012154) #25	Igf2r (ENSMOCG00000016653) #26	Slc22a1 (ENSMOCG00000006138) #27	Slc22a2 (ENSMOCG00000000432) #28	Slc22a3 (ENSMOCG00000009699) #29	Plg (ENSMOCG00000021058) #30	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #31	Agpat4 (ENSMOCG00000002544) #33	Prkn (ENSMOCG00000000910) #35	Pacrg (ENSMOCG00000018703) #37	Qki (ENSMOCG00000008370)
Prairie vole	MODERN SPECIES	358	Tmem242 (ENSMOCG00000011673)	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727)	Gtf2h5 (ENSMOCG00000000992) #7	Tulp4 (ENSMOCG00000020984) #9	ENSMOCG00000013123 #11	ENSMOCG00000011752 #12	Sytl3 (ENSMOCG00000014797) #13	Ezr (ENSMOCG00000016414) #14	ENSMOCG00000018649 #15	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263)	Wtap (ENSMOCG00000015976) #20	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #21	Mrpl18 (ENSMOCG00000016680) #23	Pnldc1 (ENSMOCG00000014287) #24	Mas1 (ENSMOCG00000012154) #25	Igf2r (ENSMOCG00000016653) #26	Slc22a1 (ENSMOCG00000006138) #27	Slc22a2 (ENSMOCG00000000432) #28	Slc22a3 (ENSMOCG00000009699) #29	Plg (ENSMOCG00000021058) #30	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #31	Agpat4 (ENSMOCG00000002544) #33	Prkn (ENSMOCG00000000910) #35	Pacrg (ENSMOCG00000018703) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	7	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226)	Gtf2h5 (ENSPEMG00000031016) #7	Tulp4 (ENSPEMG00000018536) #9	Tmem181a (ENSPEMG00000000341) #11	ENSPEMG00000018532 #12	Sytl3 (ENSPEMG00000014143) #13	Ezr (ENSPEMG00000008621) #14	ENSPEMG00000009961 #15	ENSPEMG00000010143 #16	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472)	Wtap (ENSPEMG00000013632) #20	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #21	Mrpl18 (ENSPEMG00000016836) #23	Pnldc1 (ENSPEMG00000016301) #24	Mas1 (ENSPEMG00000014302) #25	Igf2r (ENSPEMG00000016189) #26	Slc22a1 (ENSPEMG00000013645) #27	Slc22a2 (ENSPEMG00000009409) #28	Slc22a3 (ENSPEMG00000001370) #29	Plg (ENSPEMG00000006099) #30	Map3k4 (ENSPEMG00000011456) #31	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #33	Prkn (ENSPEMG00000013734) #35	ENSPEMG00000028613	ENSPEMG00000025332
Northern American deer mouse	MODERN SPECIES	7	Zdhhc14 (ENSPEMG00000019121)	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226)	Gtf2h5 (ENSPEMG00000031016) #7	Tulp4 (ENSPEMG00000018536) #9	Tmem181a (ENSPEMG00000000341) #11	ENSPEMG00000018532 #12	Sytl3 (ENSPEMG00000014143) #13	Ezr (ENSPEMG00000008621) #14	ENSPEMG00000009961 #15	ENSPEMG00000010143 #16	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472)	Wtap (ENSPEMG00000013632) #20	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #21	Mrpl18 (ENSPEMG00000016836) #23	Pnldc1 (ENSPEMG00000016301) #24	Mas1 (ENSPEMG00000014302) #25	Igf2r (ENSPEMG00000016189) #26	Slc22a1 (ENSPEMG00000013645) #27	Slc22a2 (ENSPEMG00000009409) #28	Slc22a3 (ENSPEMG00000001370) #29	Plg (ENSPEMG00000006099) #30	Map3k4 (ENSPEMG00000011456) #31	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #33	Prkn (ENSPEMG00000013734) #35	ENSPEMG00000028613
Murinae	ANCESTRAL SPECIES	29	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889)	Gtf2h5 (ENSRNOG00000018007) #7	Tulp4 (ENSRNOG00000018012) #9	Tmem181 (ENSRNOG00000018158) #11	Dynlt1 (ENSRNOG00000018207) #12	Sytl3 (ENSRNOG00000018321) #13	Ezr (ENSRNOG00000018524) #14	Rsph3 (ENSRNOG00000018762) #15	Tagap (ENSRNOG00000018915) #16	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048)	Wtap (ENSRNOG00000019091) #20	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #21	Mrpl18 (ENSRNOG00000014582) #23	Pnldc1 (ENSRNOG00000023140) #24	Mas1 (ENSRNOG00000014971) #25	Igf2r (ENSRNOG00000014997) #26	Slc22a1 (ENSRNOG00000016337) #27	Slc22a2 (ENSRNOG00000016625) #28	Slc22a3 (ENSRNOG00000022946) #29	Plg (ENSRNOG00000017223) #30	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #31	Agpat4 (ENSRNOG00000017731) #33	Prkn (ENSRNOG00000055547) #35	Pacrg (ENSRNOG00000068261) #37
Rat	MODERN SPECIES		Zdhhc14 (ENSRNOG00000029049)	Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889)	Gtf2h5 (ENSRNOG00000018007) #7	Tulp4 (ENSRNOG00000018012) #9	Tmem181 (ENSRNOG00000018158) #11	Dynlt1 (ENSRNOG00000018207) #12	Sytl3 (ENSRNOG00000018321) #13	Ezr (ENSRNOG00000018524) #14	Rsph3 (ENSRNOG00000018762) #15	Tagap (ENSRNOG00000018915) #16	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048)	Wtap (ENSRNOG00000019091) #20	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #21	Mrpl18 (ENSRNOG00000014582) #23	Pnldc1 (ENSRNOG00000023140) #24	Mas1 (ENSRNOG00000014971) #25	Igf2r (ENSRNOG00000014997) #26	Slc22a1 (ENSRNOG00000016337) #27	Slc22a2 (ENSRNOG00000016625) #28	Slc22a3 (ENSRNOG00000022946) #29	Plg (ENSRNOG00000017223) #30	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #31	Agpat4 (ENSRNOG00000017731) #33	Prkn (ENSRNOG00000055547) #35
Rat	MODERN SPECIES	5	Corin (ENSRNOG00000002302)	ENSRNOG00000069538	Atp10d (ENSRNOG00000002312)	Commd8 (ENSRNOG00000002320)	ENSRNOG00000066731	Gabrb1 (ENSRNOG00000002327)	Gabra4 (ENSRNOG00000002336)	Cox7b2 (ENSRNOG00000057953)	Gabra2 (ENSRNOG00000002349)	Gabrg1 (ENSRNOG00000002360)	ENSRNOG00000063124	Gnpda2 (ENSRNOG00000002177)	Guf1 (ENSRNOG00000002207)	Yipf7 (ENSRNOG00000002224)	Kctd8 (ENSRNOG00000063710)	ENSRNOG00000067037 #22	AABR07015525.1 (ENSRNOG00000056900)	Rtraf-ps2 (ENSRNOG00000029734)	ENSRNOG00000070341	Grxcr1 (ENSRNOG00000038891)	Atp8a1 (ENSRNOG00000034200)	Shisa3 (ENSRNOG00000025670)	ENSRNOG00000067394	Bend4 (ENSRNOG00000053303)	Slc30a9 (ENSRNOG00000002246)	Tmem33 (ENSRNOG00000002254)	Phox2b (ENSRNOG00000051929)	ENSRNOG00000065993	Limch1 (ENSRNOG00000002318)	Uchl1 (ENSRNOG00000002343)	Apbb2 (ENSRNOG00000063717)
Mus	ANCESTRAL SPECIES	21	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	13	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346) #7	Tulp4 (MGP_PahariEiJ_G0023347) #9	Tmem181a (MGP_PahariEiJ_G0023348) #11	Sytl3 (MGP_PahariEiJ_G0023349) #13	Ezr (MGP_PahariEiJ_G0023350) #14	MGP_PahariEiJ_G0023351 #15	MGP_PahariEiJ_G0023352 #15	MGP_PahariEiJ_G0023353 #16	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355)	MGP_PahariEiJ_G0023356 ##20	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #21	Mrpl18 (MGP_PahariEiJ_G0023360) #23	Pnldc1 (MGP_PahariEiJ_G0023361) #24	Mrgprh (MGP_PahariEiJ_G0023362) #25	Mas1 (MGP_PahariEiJ_G0023363) #25	Igf2r (MGP_PahariEiJ_G0023364) #26	Slc22a1 (MGP_PahariEiJ_G0023365) #27	Slc22a2 (MGP_PahariEiJ_G0023366) #28	Slc22a3 (MGP_PahariEiJ_G0023367) #29	Plg (MGP_PahariEiJ_G0023368) #30	Map3k4 (MGP_PahariEiJ_G0023369) #31	Agpat4 (MGP_PahariEiJ_G0023370) #33	Prkn (MGP_PahariEiJ_G0023371) #35	Pacrg (MGP_PahariEiJ_G0023372) #37	Qki (MGP_PahariEiJ_G0023373)
Shrew mouse	MODERN SPECIES	13	Zdhhc14 (MGP_PahariEiJ_G0023342)	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346) #7	Tulp4 (MGP_PahariEiJ_G0023347) #9	Tmem181a (MGP_PahariEiJ_G0023348) #11	Sytl3 (MGP_PahariEiJ_G0023349) #13	Ezr (MGP_PahariEiJ_G0023350) #14	MGP_PahariEiJ_G0023351 #15	MGP_PahariEiJ_G0023352 #15	MGP_PahariEiJ_G0023353 #16	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355)	MGP_PahariEiJ_G0023356 ##20	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #21	Mrpl18 (MGP_PahariEiJ_G0023360) #23	Pnldc1 (MGP_PahariEiJ_G0023361) #24	Mrgprh (MGP_PahariEiJ_G0023362) #25	Mas1 (MGP_PahariEiJ_G0023363) #25	Igf2r (MGP_PahariEiJ_G0023364) #26	Slc22a1 (MGP_PahariEiJ_G0023365) #27	Slc22a2 (MGP_PahariEiJ_G0023366) #28	Slc22a3 (MGP_PahariEiJ_G0023367) #29	Plg (MGP_PahariEiJ_G0023368) #30	Map3k4 (MGP_PahariEiJ_G0023369) #31	Agpat4 (MGP_PahariEiJ_G0023370) #33	Prkn (MGP_PahariEiJ_G0023371) #35	Pacrg (MGP_PahariEiJ_G0023372) #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	9														ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065.c.a #27	ENSGT00940000162065.d #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35
Mouse	MODERN SPECIES	8	Thbs2 (ENSMUSG00000023885)	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818)	Wtap (ENSMUSG00000060475) #20	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #21	Mrpl18 (ENSMUSG00000057388) #23	Pnldc1 (ENSMUSG00000073460) #24	Mrgprh (ENSMUSG00000059408) #25	Mas1 (ENSMUSG00000068037) #25	Igf2r (ENSMUSG00000023830) #26	Slc22a1 (ENSMUSG00000023829) #27	Slc22a2 (ENSMUSG00000040966) #28	Slc22a3 (ENSMUSG00000023828) #29	Plg (ENSMUSG00000059481) #30	Map3k4 (ENSMUSG00000014426) #31	Agpat4 (ENSMUSG00000023827) #33	Prkn (ENSMUSG00000023826) #35	Pacrg (ENSMUSG00000037196) #37
Mus_C	ANCESTRAL SPECIES	35													ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT00390000013931.a.a ##20	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065.c.a #27	ENSGT00940000162065.d #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35
spretus	MODERN SPECIES	8	Dll1 (MGP_SPRETEiJ_G0021994)	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981)	MGP_SPRETEiJ_G0021980 ##20	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #21	Mrpl18 (MGP_SPRETEiJ_G0021976) #23	Pnldc1 (MGP_SPRETEiJ_G0021975) #24	Mrgprh (MGP_SPRETEiJ_G0021974) #25	Mas1 (MGP_SPRETEiJ_G0021973) #25	Igf2r (MGP_SPRETEiJ_G0021972) #26	Slc22a1 (MGP_SPRETEiJ_G0021971) #27	Slc22a2 (MGP_SPRETEiJ_G0021970) #28	Slc22a3 (MGP_SPRETEiJ_G0021969) #29	Plg (MGP_SPRETEiJ_G0021968) #30	Map3k4 (MGP_SPRETEiJ_G0021967) #31	Agpat4 (MGP_SPRETEiJ_G0021966) #33	Prkn (MGP_SPRETEiJ_G0021965) #35	Pacrg (MGP_SPRETEiJ_G0021964) #37
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065.c.a #27	ENSGT00940000162065.d #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37
Mus_C	ANCESTRAL SPECIES	35												ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT00390000013931.a.a ##20	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065.c.a #27	ENSGT00940000162065.d #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981)	MGP_SPRETEiJ_G0021980 ##20	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #21	Mrpl18 (MGP_SPRETEiJ_G0021976) #23	Pnldc1 (MGP_SPRETEiJ_G0021975) #24	Mrgprh (MGP_SPRETEiJ_G0021974) #25	Mas1 (MGP_SPRETEiJ_G0021973) #25	Igf2r (MGP_SPRETEiJ_G0021972) #26	Slc22a1 (MGP_SPRETEiJ_G0021971) #27	Slc22a2 (MGP_SPRETEiJ_G0021970) #28	Slc22a3 (MGP_SPRETEiJ_G0021969) #29	Plg (MGP_SPRETEiJ_G0021968) #30	Map3k4 (MGP_SPRETEiJ_G0021967) #31	Agpat4 (MGP_SPRETEiJ_G0021966) #33	Prkn (MGP_SPRETEiJ_G0021965) #35	Pacrg (MGP_SPRETEiJ_G0021964) #37	Qki (MGP_SPRETEiJ_G0021963)
Steppe mouse	MODERN SPECIES	2213															ENSMSIG00000026854	ENSMSIG00000026841 #22	Tcp1 (ENSMSIG00000026789) #21	ENSMSIG00000026775 #23	Pnldc1 (ENSMSIG00000026738) #24	Mrgprh (ENSMSIG00000026732) #25	Mas1 (ENSMSIG00000026719) #25	ENSMSIG00000026712	ENSMSIG00000026700	ENSMSIG00000026694	Igf2r (ENSMSIG00000026592) #26	Slc22a1 (ENSMSIG00000026565) #27
Mouse	MODERN SPECIES	8	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818)	Wtap (ENSMUSG00000060475) #20	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #21	Mrpl18 (ENSMUSG00000057388) #23	Pnldc1 (ENSMUSG00000073460) #24	Mrgprh (ENSMUSG00000059408) #25	Mas1 (ENSMUSG00000068037) #25	Igf2r (ENSMUSG00000023830) #26	Slc22a1 (ENSMUSG00000023829) #27	Slc22a2 (ENSMUSG00000040966) #28	Slc22a3 (ENSMUSG00000023828) #29	Plg (ENSMUSG00000059481) #30	Map3k4 (ENSMUSG00000014426) #31	Agpat4 (ENSMUSG00000023827) #33	Prkn (ENSMUSG00000023826) #35	Pacrg (ENSMUSG00000037196) #37	Qki (ENSMUSG00000062078)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	8	Synj2 (MGP_CAROLIEiJ_G0021026)	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #7	Tulp4 (MGP_CAROLIEiJ_G0021029) #9	Tmem181a (MGP_CAROLIEiJ_G0021030) #11	MGP_CAROLIEiJ_G0021031 #12	MGP_CAROLIEiJ_G0021032 #12	Sytl3 (MGP_CAROLIEiJ_G0021033) #13	Ezr (MGP_CAROLIEiJ_G0021034) #14	MGP_CAROLIEiJ_G0021035 #15	MGP_CAROLIEiJ_G0021036 #15	MGP_CAROLIEiJ_G0021037 #16	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039)	MGP_CAROLIEiJ_G0021040 ##20	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #21	Mrpl18 (MGP_CAROLIEiJ_G0021044) #23	Pnldc1 (MGP_CAROLIEiJ_G0021045) #24	Mrgprh (MGP_CAROLIEiJ_G0021046) #25	Mas1 (MGP_CAROLIEiJ_G0021047) #25	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #27	Slc22a2 (MGP_CAROLIEiJ_G0021050) #28	Slc22a3 (MGP_CAROLIEiJ_G0021051) #29	Plg (MGP_CAROLIEiJ_G0021052) #30	Map3k4 (MGP_CAROLIEiJ_G0021053) #31	Agpat4 (MGP_CAROLIEiJ_G0021054) #33	Prkn (MGP_CAROLIEiJ_G0021055) #35	Pacrg (MGP_CAROLIEiJ_G0021056) #37
Ryukyu mouse	MODERN SPECIES	8	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #7	Tulp4 (MGP_CAROLIEiJ_G0021029) #9	Tmem181a (MGP_CAROLIEiJ_G0021030) #11	MGP_CAROLIEiJ_G0021031 #12	MGP_CAROLIEiJ_G0021032 #12	Sytl3 (MGP_CAROLIEiJ_G0021033) #13	Ezr (MGP_CAROLIEiJ_G0021034) #14	MGP_CAROLIEiJ_G0021035 #15	MGP_CAROLIEiJ_G0021036 #15	MGP_CAROLIEiJ_G0021037 #16	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039)	MGP_CAROLIEiJ_G0021040 ##20	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #21	Mrpl18 (MGP_CAROLIEiJ_G0021044) #23	Pnldc1 (MGP_CAROLIEiJ_G0021045) #24	Mrgprh (MGP_CAROLIEiJ_G0021046) #25	Mas1 (MGP_CAROLIEiJ_G0021047) #25	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #27	Slc22a2 (MGP_CAROLIEiJ_G0021050) #28	Slc22a3 (MGP_CAROLIEiJ_G0021051) #29	Plg (MGP_CAROLIEiJ_G0021052) #30	Map3k4 (MGP_CAROLIEiJ_G0021053) #31	Agpat4 (MGP_CAROLIEiJ_G0021054) #33	Prkn (MGP_CAROLIEiJ_G0021055) #35	Pacrg (MGP_CAROLIEiJ_G0021056) #37	Qki (MGP_CAROLIEiJ_G0021057)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	863													Sod2 (ENSNGAG00000012434)	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #20	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #21	Mrpl18 (ENSNGAG00000020549) #23	Pnldc1 (ENSNGAG00000017714) #24	Mas1 (ENSNGAG00000011460) #25	Igf2r (ENSNGAG00000015486) #26	Slc22a1 (ENSNGAG00000022062) #27
Upper Galilee mountains blind mole rat	MODERN SPECIES	863												Sod2 (ENSNGAG00000012434)	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #20	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #21	Mrpl18 (ENSNGAG00000020549) #23	Pnldc1 (ENSNGAG00000017714) #24	Mas1 (ENSNGAG00000011460) #25	Igf2r (ENSNGAG00000015486) #26	Slc22a1 (ENSNGAG00000022062) #27
Lesser Egyptian jerboa	MODERN SPECIES	44	Synj2 (ENSJJAG00000014436)	Serac1 (ENSJJAG00000008471)	Gtf2h5 (ENSJJAG00000014212) #7	ENSJJAG00000018115	ENSJJAG00000007576	Tulp4 (ENSJJAG00000015161) #9	ENSJJAG00000016901 #11	ENSJJAG00000021394 #12	Sytl3 (ENSJJAG00000000977) #13	Ezr (ENSJJAG00000018957) #14	ENSJJAG00000008005 #15	ENSJJAG00000002202 #16	Fndc1 (ENSJJAG00000019101) #18	Sod2 (ENSJJAG00000018002)	Wtap (ENSJJAG00000017886) #20	ENSJJAG00000022555 #22	ENSJJAG00000019850 #21	Pnldc1 (ENSJJAG00000009937) #24	Mas1 (ENSJJAG00000011567) #25	Igf2r (ENSJJAG00000019554) #26	Slc22a1 (ENSJJAG00000017119) #27	Slc22a2 (ENSJJAG00000020676) #28	Slc22a3 (ENSJJAG00000015842) #29	Plg (ENSJJAG00000023805) #30	ENSJJAG00000016960 #31	ENSJJAG00000017984 #31	Agpat4 (ENSJJAG00000024380) #33	Prkn (ENSJJAG00000011282) #35	ENSJJAG00000022340	Pacrg (ENSJJAG00000013819) #37	Qki (ENSJJAG00000022765)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	404											Adamts19 (ENSDORG00000012822)	Minar2 (ENSDORG00000026115)	Chsy3 (ENSDORG00000002765)	ENSDORG00000024861	ENSDORG00000026780	ENSDORG00000023323 #22	Smim3 (ENSDORG00000028277)	Dctn4 (ENSDORG00000008190)	Rbm22 (ENSDORG00000005329)	Myoz3 (ENSDORG00000005327)	Synpo (ENSDORG00000005325)	Ndst1 (ENSDORG00000016071)	ENSDORG00000007146	Cd74 (ENSDORG00000001514)	Arsi (ENSDORG00000009222)	Camk2a (ENSDORG00000009223)	Slc6a7 (ENSDORG00000000014)	Cdx1 (ENSDORG00000029630)	Pdgfrb (ENSDORG00000009895)	Csf1r (ENSDORG00000009892)	Hmgxb3 (ENSDORG00000009890)
Kangaroo rat	MODERN SPECIES	396					ENSDORG00000008869	Snx9 (ENSDORG00000007327)	Synj2 (ENSDORG00000014128)	Serac1 (ENSDORG00000014130)	ENSDORG00000005088 #7	Tulp4 (ENSDORG00000024333) #9	ENSDORG00000014045 #11	ENSDORG00000014053 #12	Ezr (ENSDORG00000015424) #14	Sod2 (ENSDORG00000001358)	ENSDORG00000026059 #20	ENSDORG00000011505 #22	ENSDORG00000011510 #21	Pnldc1 (ENSDORG00000011517) #24	Mas1 (ENSDORG00000003320) #25	Igf2r (ENSDORG00000009527) #26	Slc22a1 (ENSDORG00000011523) #27	Slc22a2 (ENSDORG00000008400) #28	Slc22a3 (ENSDORG00000008402) #29	Plg (ENSDORG00000024248) #30	ENSDORG00000025664 #31	Agpat4 (ENSDORG00000015627) #33	ENSDORG00000027142 #35	ENSDORG00000026934 #37	Qki (ENSDORG00000008151)	Pde10a (ENSDORG00000005783)	ENSDORG00000012736
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531.`b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000015545.v	ENSGT00390000011034 #35	ENSGT00940000157330 #37
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531.`b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000015545.v	ENSGT00390000011034 #35	ENSGT00940000157330 #37
Squirrel	MODERN SPECIES	89	SNX9 (ENSSTOG00000010620)	SYNJ2 (ENSSTOG00000016474)	SERAC1 (ENSSTOG00000016478)	GTF2H5 (ENSSTOG00000003476) #7	TULP4 (ENSSTOG00000006169) #9	TMEM181 (ENSSTOG00000006218) #11	ENSSTOG00000006273 #12	SYTL3 (ENSSTOG00000006284) #13	EZR (ENSSTOG00000006325) #14	RSPH3 (ENSSTOG00000021240) #15	TAGAP (ENSSTOG00000021563) #16	FNDC1 (ENSSTOG00000007105) #18	ENSSTOG00000033536	SOD2 (ENSSTOG00000008738)	WTAP (ENSSTOG00000026157) #20	ACAT2 (ENSSTOG00000005564) #22	ENSSTOG00000005572 #21	MRPL18 (ENSSTOG00000005583) #23	PNLDC1 (ENSSTOG00000005595) #24	ENSSTOG00000026373 #25	MAS1 (ENSSTOG00000029761) #25	IGF2R (ENSSTOG00000008960) #26	SLC22A1 (ENSSTOG00000009024) #27	SLC22A2 (ENSSTOG00000010147) #28	SLC22A3 (ENSSTOG00000007036) #29	ENSSTOG00000020315 #30	MAP3K4 (ENSSTOG00000002821) #31	AGPAT4 (ENSSTOG00000002544) #33	PRKN (ENSSTOG00000021965) #35	ENSSTOG00000034364	PACRG (ENSSTOG00000010375) #37
Alpin marmot	MODERN SPECIES	55	SNX9 (ENSMMMG00000012106)	SYNJ2 (ENSMMMG00000010186)	SERAC1 (ENSMMMG00000010093)	GTF2H5 (ENSMMMG00000010071) #7	ENSMMMG00000010057	TULP4 (ENSMMMG00000010029) #9	TMEM181 (ENSMMMG00000009973) #11	ENSMMMG00000009958 #12	SYTL3 (ENSMMMG00000009912) #13	EZR (ENSMMMG00000009906) #14	RSPH3 (ENSMMMG00000009878) #15	TAGAP (ENSMMMG00000009875) #16	ENSMMMG00000009777	SOD2 (ENSMMMG00000009744)	WTAP (ENSMMMG00000009724) #20	ACAT2 (ENSMMMG00000009712) #22	TCP1 (ENSMMMG00000009649) #21	MRPL18 (ENSMMMG00000009635) #23	PNLDC1 (ENSMMMG00000009617) #24	ENSMMMG00000009610 #25	MAS1 (ENSMMMG00000009593) #25	IGF2R (ENSMMMG00000009520) #26	SLC22A1 (ENSMMMG00000009498) #27	SLC22A2 (ENSMMMG00000009474) #28	SLC22A3 (ENSMMMG00000009457) #29	ENSMMMG00000009428 #30	MAP3K4 (ENSMMMG00000009318) #31	AGPAT4 (ENSMMMG00000009306) #33	ENSMMMG00000009285	PRKN (ENSMMMG00000009240) #35	PACRG (ENSMMMG00000009213) #37
Eurasian red squirrel	MODERN SPECIES	16	SERAC1 (ENSSVLG00005017957)	ENSSVLG00005017883	GTF2H5 (ENSSVLG00005017847) #7	TULP4 (ENSSVLG00005017496) #9	TMEM181 (ENSSVLG00005017253) #11	DYNLT1 (ENSSVLG00005017209) #12	ENSSVLG00005017151	SYTL3 (ENSSVLG00005016826) #13	EZR (ENSSVLG00005016672) #14	RSPH3 (ENSSVLG00005016457) #15	TAGAP (ENSSVLG00005016286) #16	FNDC1 (ENSSVLG00005015913) #18	ENSSVLG00005015820	ENSSVLG00005015666	ENSSVLG00005015534 #20	ACAT2 (ENSSVLG00005015487) #22	ENSSVLG00005015119 #21	ENSSVLG00005015024	MRPL18 (ENSSVLG00005014946) #23	ENSSVLG00005014568 #24	MAS1 (ENSSVLG00005014545) #25	ENSSVLG00005014490	IGF2R (ENSSVLG00005013999) #26	SLC22A1 (ENSSVLG00005013724) #27	SLC22A2 (ENSSVLG00005013453) #28	SLC22A3 (ENSSVLG00005013302) #29	ENSSVLG00005013240 #30	ENSSVLG00005013165 #30	ENSSVLG00005013042 #30	MAP3K4 (ENSSVLG00005011972) #31	AGPAT4 (ENSSVLG00005011803) #33
Hystricomorpha	ANCESTRAL SPECIES	53														ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Naked mole-rat female	MODERN SPECIES		IL17A (ENSHGLG00000014659)	IL17F (ENSHGLG00000017633)	MCM3 (ENSHGLG00000016531)	PAQR8 (ENSHGLG00000010601)	EFHC1 (ENSHGLG00000009785)	ENSHGLG00000009261	ENSHGLG00000047464	ENSHGLG00000035426	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000043320	ENSHGLG00000007131	ENSHGLG00000048454	ENSHGLG00000016518	WTAP (ENSHGLG00000007879) #20	ENSHGLG00000033037	ACAT2 (ENSHGLG00000006902) #22	ENSHGLG00000034564 #21	ENSHGLG00000004341	ENSHGLG00000003723	TCP1 (ENSHGLG00000007866) #21	ENSHGLG00000007214 #23	PNLDC1 (ENSHGLG00000006889) #24	ENSHGLG00000035250	MAS1 (ENSHGLG00000019988) #25	ENSHGLG00000039226	Igf2r (ENSHGLG00000003728) #26	SLC22A1 (ENSHGLG00000017500) #27	ENSHGLG00000014427	ENSHGLG00000017482 #28	ENSHGLG00000034005	ENSHGLG00000050994
Hystricomorpha_a	ANCESTRAL SPECIES	30														ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Guinea pig	MODERN SPECIES	60													ENSCPOG00000040324	SOD2 (ENSCPOG00000036439)	WTAP (ENSCPOG00000001669) #20	ACAT2 (ENSCPOG00000001672) #22	TCP1 (ENSCPOG00000001676) #21	MRPL18 (ENSCPOG00000040103) #23	PNLDC1 (ENSCPOG00000019565) #24	MAS1 (ENSCPOG00000000027) #25	IGF2R (ENSCPOG00000013207) #26	SLC22A2 (ENSCPOG00000001527) #28	SLC22A3 (ENSCPOG00000010127) #29	ENSCPOG00000011605 #30	MAP3K4 (ENSCPOG00000013392) #31	AGPAT4 (ENSCPOG00000006135) #33	PRKN (ENSCPOG00000006136) #35	PACRG (ENSCPOG00000013410) #37	QKI (ENSCPOG00000003424)	C6orf118 (ENSCPOG00000008774)	PDE10A (ENSCPOG00000008783)
Hystricomorpha_b	ANCESTRAL SPECIES	29														ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Long-tailed chinchilla	MODERN SPECIES	146														SOD2 (ENSCLAG00000010198)	WTAP (ENSCLAG00000009722) #20	ACAT2 (ENSCLAG00000009441) #22	ENSCLAG00000009354 #21	ENSCLAG00000012133	MRPL18 (ENSCLAG00000012045) #23	PNLDC1 (ENSCLAG00000003228) #24	MAS1 (ENSCLAG00000017515) #25	IGF2R (ENSCLAG00000002642) #26	SLC22A1 (ENSCLAG00000002646) #27	SLC22A2 (ENSCLAG00000002562) #28	SLC22A3 (ENSCLAG00000002492) #29	ENSCLAG00000002399 #30	MAP3K4 (ENSCLAG00000008769) #31	AGPAT4 (ENSCLAG00000008421) #33	PRKN (ENSCLAG00000008284) #35	PACRG (ENSCLAG00000008105) #37	ENSCLAG00000006238
Degu	MODERN SPECIES	153	FOXK2 (ENSODEG00000008321)	WDR45B (ENSODEG00000007809)	RAB40B (ENSODEG00000007441)	ENSODEG00000020021	FN3KRP (ENSODEG00000012467)	ENSODEG00000009328	ENSODEG00000019653	ZNF750 (ENSODEG00000008866)	TBCD (ENSODEG00000009094)	B3GNTL1 (ENSODEG00000011917)	METRNL (ENSODEG00000008002)	ENSODEG00000019438	SOD2 (ENSODEG00000007052)	ENSODEG00000019351	ENSODEG00000008023 ##20	ACAT2 (ENSODEG00000008431) #22	ENSODEG00000008372 #21	ENSODEG00000007990 #21	ENSODEG00000007318 #23	ENSODEG00000019385	PNLDC1 (ENSODEG00000008047) #24	ENSODEG00000019381	MAS1 (ENSODEG00000019418) #25	ENSODEG00000019599	IGF2R (ENSODEG00000007106) #26	ENSODEG00000019312	SLC22A1 (ENSODEG00000007862) #27	SLC22A2 (ENSODEG00000007315) #28	ENSODEG00000007010	ENSODEG00000006583	SLC22A3 (ENSODEG00000006460) #29
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	5661																ENSTBEG00000012375 #22
Tree shrew	MODERN SPECIES	869																ENSTBEG00000008352 #22	TCP1 (ENSTBEG00000008585) #21	PNLDC1 (ENSTBEG00000009131) #24
Primates	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.g.a #16	ENSGT00940000157993.h #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mouse lemur	MODERN SPECIES	28	SNX9 (ENSMICG00000008656)	SYNJ2 (ENSMICG00000015804)	SERAC1 (ENSMICG00000015831)	GTF2H5 (ENSMICG00000046368) #7	TULP4 (ENSMICG00000009203) #9	TMEM181 (ENSMICG00000009469) #11	ENSMICG00000009483 #12	SYTL3 (ENSMICG00000009493) #13	ENSMICG00000009498 #14	RSPH3 (ENSMICG00000047073) #15	TAGAP (ENSMICG00000031485) #16	FNDC1 (ENSMICG00000010483) #18	SOD2 (ENSMICG00000035793)	WTAP (ENSMICG00000033919) #20	ENSMICG00000042830	ACAT2 (ENSMICG00000007988) #22	ENSMICG00000007998 #21	MRPL18 (ENSMICG00000044845) #23	PNLDC1 (ENSMICG00000008021) #24	IGF2R (ENSMICG00000007582) #26	SLC22A1 (ENSMICG00000007625) #27	SLC22A2 (ENSMICG00000007636) #28	SLC22A3 (ENSMICG00000007647) #29	ENSMICG00000034395 #30	MAP3K4 (ENSMICG00000007663) #31	AGPAT4 (ENSMICG00000009184) #33	PRKN (ENSMICG00000009200) #35	PACRG (ENSMICG00000009209) #37	QKI (ENSMICG00000009220)	C6orf118 (ENSMICG00000046277)	PDE10A (ENSMICG00000008121)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.g.a #16	ENSGT00940000157993.h #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Greater bamboo lemur	MODERN SPECIES	990				TULP4 (ENSPSMG00000019869) #9	ENSPSMG00000019843	TMEM181 (ENSPSMG00000019837) #11	DYNLT1 (ENSPSMG00000019821) #12	SYTL3 (ENSPSMG00000019808) #13	EZR (ENSPSMG00000019645) #14	RSPH3 (ENSPSMG00000019513) #15	ENSPSMG00000019495 #16	ENSPSMG00000019487 #16	FNDC1 (ENSPSMG00000019475) #18	SOD2 (ENSPSMG00000019437)	WTAP (ENSPSMG00000019381) #20	ACAT2 (ENSPSMG00000019357) #22	TCP1 (ENSPSMG00000019332) #21	MRPL18 (ENSPSMG00000019284) #23	PNLDC1 (ENSPSMG00000019276) #24	MAS1 (ENSPSMG00000019268) #25	ENSPSMG00000019267	IGF2R (ENSPSMG00000019256) #26	ENSPSMG00000019218 #28	ENSPSMG00000019203 #27	ENSPSMG00000019196 #27	SLC22A3 (ENSPSMG00000019195) #29	ENSPSMG00000019187 #30	ENSPSMG00000019164	MAP3K4 (ENSPSMG00000018873) #31	AGPAT4 (ENSPSMG00000018610) #33	ENSPSMG00000018587 #35
Coquerels sifaka	MODERN SPECIES	358	SNX9 (ENSPCOG00000027841)	SYNJ2 (ENSPCOG00000026910)	SERAC1 (ENSPCOG00000014108)	ENSPCOG00000027272 #7	TULP4 (ENSPCOG00000015899) #9	ENSPCOG00000028064	TMEM181 (ENSPCOG00000018974) #11	DYNLT1 (ENSPCOG00000015219) #12	SYTL3 (ENSPCOG00000016619) #13	EZR (ENSPCOG00000002371) #14	RSPH3 (ENSPCOG00000007389) #15	ENSPCOG00000019827 #16	FNDC1 (ENSPCOG00000003224) #18	SOD2 (ENSPCOG00000014692)	WTAP (ENSPCOG00000014167) #20	ACAT2 (ENSPCOG00000011643) #22	ENSPCOG00000017935 #21	MRPL18 (ENSPCOG00000025100) #23	PNLDC1 (ENSPCOG00000025722) #24	IGF2R (ENSPCOG00000018469) #26	SLC22A1 (ENSPCOG00000021330) #27	SLC22A2 (ENSPCOG00000023545) #28	SLC22A3 (ENSPCOG00000017815) #29	ENSPCOG00000026308 #30	MAP3K4 (ENSPCOG00000015288) #31	AGPAT4 (ENSPCOG00000013535) #33	PRKN (ENSPCOG00000019988) #35	PACRG (ENSPCOG00000013888) #37	QKI (ENSPCOG00000007664)	ENSPCOG00000022276
Bushbaby	MODERN SPECIES	171	SNX9 (ENSOGAG00000000487)	SYNJ2 (ENSOGAG00000000488)	SERAC1 (ENSOGAG00000000490)	GTF2H5 (ENSOGAG00000032151) #7	TULP4 (ENSOGAG00000000492) #9	TMEM181 (ENSOGAG00000000493) #11	DYNLT1 (ENSOGAG00000000494) #12	SYTL3 (ENSOGAG00000000495) #13	ENSOGAG00000000499 #14	RSPH3 (ENSOGAG00000033207) #15	ENSOGAG00000010321	TAGAP (ENSOGAG00000012767) #16	FNDC1 (ENSOGAG00000003812) #18	SOD2 (ENSOGAG00000017100)	ENSOGAG00000007311 #20	ACAT2 (ENSOGAG00000007315) #22	TCP1 (ENSOGAG00000007320) #21	MRPL18 (ENSOGAG00000007327) #23	PNLDC1 (ENSOGAG00000007331) #24	ENSOGAG00000031607 #25	ENSOGAG00000031154 #20	MAS1 (ENSOGAG00000005268) #25	IGF2R (ENSOGAG00000005270) #26	SLC22A1 (ENSOGAG00000005276) #27	ENSOGAG00000005280	SLC22A2 (ENSOGAG00000005281) #28	SLC22A3 (ENSOGAG00000004550) #29	ENSOGAG00000030352 #30	MAP3K4 (ENSOGAG00000004556) #31	AGPAT4 (ENSOGAG00000004567) #33	PRKN (ENSOGAG00000010979) #35
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Tarsier	MODERN SPECIES	7263														SOD2 (ENSTSYG00000000457)	WTAP (ENSTSYG00000001946) #20	ACAT2 (ENSTSYG00000003819) #22	TCP1 (ENSTSYG00000005513) #21	MRPL18 (ENSTSYG00000005598) #23	ENSTSYG00000030745	PNLDC1 (ENSTSYG00000005606) #24	IGF2R (ENSTSYG00000005881) #26
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208.p #30	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Hominidae	ANCESTRAL SPECIES	5	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208.p #30	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208.p #30	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208.p #30	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Pan	ANCESTRAL SPECIES	5	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017606.a.a.i.a.b.a.a	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208.p #30	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Chimpanzee	MODERN SPECIES	19	GTF2H5 (ENSPTRG00000051853) #7	ENSPTRG00000048100	TULP4 (ENSPTRG00000018743) #9	TMEM181 (ENSPTRG00000018745) #11	DYNLT1 (ENSPTRG00000018746) #12	SYTL3 (ENSPTRG00000018747) #13	EZR (ENSPTRG00000018748) #14	RSPH3 (ENSPTRG00000018751) #15	TAGAP (ENSPTRG00000018752) #16	FNDC1 (ENSPTRG00000018754) #18	ENSPTRG00000050636	ENSPTRG00000045605	SOD2 (ENSPTRG00000018757)	ENSPTRG00000046132	WTAP (ENSPTRG00000018758) #20	ACAT2 (ENSPTRG00000018759) #22	TCP1 (ENSPTRG00000018760) #21	MRPL18 (ENSPTRG00000018761) #23	PNLDC1 (ENSPTRG00000018762) #24	MAS1 (ENSPTRG00000018763) #25	IGF2R (ENSPTRG00000018764) #26	ENSPTRG00000051861	SLC22A1 (ENSPTRG00000018767) #27	SLC22A2 (ENSPTRG00000018768) #28	SLC22A3 (ENSPTRG00000018769) #29	LPA (ENSPTRG00000018770)	PLG (ENSPTRG00000018774) #30	MAP3K4 (ENSPTRG00000046415) #31	ENSPTRG00000048118	AGPAT4 (ENSPTRG00000018779) #33	PRKN (ENSPTRG00000018781) #35
Bonobo	MODERN SPECIES	19	ENSPPAG00000011428	TULP4 (ENSPPAG00000038644) #9	ENSPPAG00000008988	TMEM181 (ENSPPAG00000028271) #11	ENSPPAG00000042250 #12	SYTL3 (ENSPPAG00000043773) #13	EZR (ENSPPAG00000036860) #14	ENSPPAG00000000806	ENSPPAG00000013502 #15	TAGAP (ENSPPAG00000040185) #16	FNDC1 (ENSPPAG00000042837) #18	ENSPPAG00000024927	SOD2 (ENSPPAG00000038347)	ENSPPAG00000028640	WTAP (ENSPPAG00000028625) #20	ACAT2 (ENSPPAG00000043658) #22	TCP1 (ENSPPAG00000030713) #21	MRPL18 (ENSPPAG00000001652) #23	PNLDC1 (ENSPPAG00000026651) #24	MAS1 (ENSPPAG00000003542) #25	IGF2R (ENSPPAG00000022058) #26	ENSPPAG00000029247	SLC22A1 (ENSPPAG00000017979) #27	SLC22A2 (ENSPPAG00000012601) #28	SLC22A3 (ENSPPAG00000009760) #29	ENSPPAG00000026664 #30	ENSPPAG00000034032	PLG (ENSPPAG00000042434) #30	MAP3K4 (ENSPPAG00000037745) #31	ENSPPAG00000006234	AGPAT4 (ENSPPAG00000041903) #33
Human	MODERN SPECIES	18	ZDHHC14 (ENSG00000175048)	SNX9 (ENSG00000130340)	SYNJ2 (ENSG00000078269)	SERAC1 (ENSG00000122335)	GTF2H5 (ENSG00000272047) #7	TULP4 (ENSG00000130338) #9	TMEM181 (ENSG00000146433) #11	DYNLT1 (ENSG00000146425) #12	SYTL3 (ENSG00000164674) #13	EZR (ENSG00000092820) #14	RSPH3 (ENSG00000130363) #15	TAGAP (ENSG00000164691) #16	FNDC1 (ENSG00000164694) #18	SOD2 (ENSG00000291237)	WTAP (ENSG00000146457) #20	ACAT2 (ENSG00000120437) #22	TCP1 (ENSG00000120438) #21	MRPL18 (ENSG00000112110) #23	PNLDC1 (ENSG00000146453) #24	MAS1 (ENSG00000130368) #25	IGF2R (ENSG00000197081) #26	SLC22A1 (ENSG00000175003) #27	SLC22A2 (ENSG00000112499) #28	SLC22A3 (ENSG00000146477) #29	LPA (ENSG00000198670)	PLG (ENSG00000122194) #30	MAP3K4 (ENSG00000085511) #31	AGPAT4 (ENSG00000026652) #33	PRKN (ENSG00000185345) #35	PACRG (ENSG00000112530) #37	QKI (ENSG00000112531)
Gorilla	MODERN SPECIES	19	SNX9 (ENSGGOG00000003616)	SYNJ2 (ENSGGOG00000012210)	SERAC1 (ENSGGOG00000002450)	GTF2H5 (ENSGGOG00000025095) #7	TULP4 (ENSGGOG00000012077) #9	ENSGGOG00000042759	ENSGGOG00000000103 #11	DYNLT1 (ENSGGOG00000009979) #12	SYTL3 (ENSGGOG00000013290) #13	EZR (ENSGGOG00000013301) #14	ENSGGOG00000003870 #15	TAGAP (ENSGGOG00000004612) #16	FNDC1 (ENSGGOG00000014902) #18	SOD2 (ENSGGOG00000008212)	WTAP (ENSGGOG00000006039) #20	ACAT2 (ENSGGOG00000014051) #22	TCP1 (ENSGGOG00000014063) #21	MRPL18 (ENSGGOG00000014075) #23	PNLDC1 (ENSGGOG00000014077) #24	MAS1 (ENSGGOG00000010485) #25	IGF2R (ENSGGOG00000001658) #26	ENSGGOG00000022414	SLC22A1 (ENSGGOG00000001671) #27	SLC22A2 (ENSGGOG00000013636) #28	SLC22A3 (ENSGGOG00000001951) #29	LPA (ENSGGOG00000016065)	PLG (ENSGGOG00000010300) #30	MAP3K4 (ENSGGOG00000008360) #31	ENSGGOG00000023810	PRKN (ENSGGOG00000041961) #35	PACRG (ENSGGOG00000014095) #37
Orangutan	MODERN SPECIES	19	ENSPPYG00000035657	SYNJ2 (ENSPPYG00000017130)	SERAC1 (ENSPPYG00000017131)	GTF2H5 (ENSPPYG00000017132) #7	TULP4 (ENSPPYG00000017133) #9	ENSPPYG00000017134 #11	DYNLT1 (ENSPPYG00000033573) #12	SYTL3 (ENSPPYG00000017136) #13	EZR (ENSPPYG00000017137) #14	ENSPPYG00000017138	ENSPPYG00000017140 #15	TAGAP (ENSPPYG00000017141) #16	FNDC1 (ENSPPYG00000017142) #18	SOD2 (ENSPPYG00000034460)	WTAP (ENSPPYG00000017144) #20	ACAT2 (ENSPPYG00000017145) #22	TCP1 (ENSPPYG00000017146) #21	ENSPPYG00000017147 #23	PNLDC1 (ENSPPYG00000017148) #24	MAS1 (ENSPPYG00000017261) #25	IGF2R (ENSPPYG00000017149) #26	SLC22A1 (ENSPPYG00000017150) #27	SLC22A2 (ENSPPYG00000017151) #28	SLC22A3 (ENSPPYG00000017152) #29	ENSPPYG00000029841 #30	ENSPPYG00000039278	PLG (ENSPPYG00000017153) #30	MAP3K4 (ENSPPYG00000017155) #31	ENSPPYG00000038768	AGPAT4 (ENSPPYG00000017156) #33	PRKN (ENSPPYG00000017158) #35
Gibbon	MODERN SPECIES	18	SERAC1 (ENSNLEG00000010806)	GTF2H5 (ENSNLEG00000033388) #7	ENSNLEG00000010844	TULP4 (ENSNLEG00000010847) #9	ENSNLEG00000034975	ENSNLEG00000010915 #11	DYNLT1 (ENSNLEG00000010926) #12	SYTL3 (ENSNLEG00000010927) #13	EZR (ENSNLEG00000010950) #14	ENSNLEG00000027909	ENSNLEG00000010982 #15	TAGAP (ENSNLEG00000010995) #16	FNDC1 (ENSNLEG00000011059) #18	SOD2 (ENSNLEG00000011061)	WTAP (ENSNLEG00000028233) #20	ACAT2 (ENSNLEG00000011115) #22	TCP1 (ENSNLEG00000011178) #21	MRPL18 (ENSNLEG00000011269) #23	PNLDC1 (ENSNLEG00000011282) #24	IGF2R (ENSNLEG00000011313) #26	ENSNLEG00000035869	ENSNLEG00000035654 #27	SLC22A2 (ENSNLEG00000011367) #28	ENSNLEG00000011373 #29	ENSNLEG00000011380 #30	MAP3K4 (ENSNLEG00000011428) #31	ENSNLEG00000011464 #33	PRKN (ENSNLEG00000011473) #35	PACRG (ENSNLEG00000011474) #37	ENSNLEG00000011478	C6orf118 (ENSNLEG00000011493)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT00910000147813	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35
Rhinopithecus	ANCESTRAL SPECIES	446														ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29
Golden snub-nosed monkey	MODERN SPECIES	1391														SOD2 (ENSRROG00000028133)	WTAP (ENSRROG00000028905) #20	ENSRROG00000030788 #22	ENSRROG00000045492 #21	MRPL18 (ENSRROG00000030298) #23	PNLDC1 (ENSRROG00000043919) #24	MAS1 (ENSRROG00000026378) #25	ENSRROG00000026110	IGF2R (ENSRROG00000036542) #26	SLC22A1 (ENSRROG00000034563) #27	SLC22A2 (ENSRROG00000038341) #28	SLC22A3 (ENSRROG00000035773) #29
Black snub-nosed monkey	MODERN SPECIES	1642													ENSRBIG00000036754	SOD2 (ENSRBIG00000038398)	WTAP (ENSRBIG00000028069) #20	ENSRBIG00000038582 #22	ENSRBIG00000038225 #21	ENSRBIG00000038575 #23	PNLDC1 (ENSRBIG00000033806) #24	MAS1 (ENSRBIG00000021000) #25	ENSRBIG00000019925	IGF2R (ENSRBIG00000041184) #26	SLC22A1 (ENSRBIG00000036475) #27	SLC22A2 (ENSRBIG00000031107) #28	SLC22A3 (ENSRBIG00000033139) #29
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.d.e.b	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000155616.c.a.f	ENSGT00940000154531.y.a #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #30	ENSGT00940000157183.a.a.b	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00950000182895.a.a.a.a.b.k	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b.ab #20	ENSGT00390000013931.a.b.b.`b.a #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b.`b.a #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #33
Olive baboon	MODERN SPECIES	16	AFG1L (ENSPANG00000007612)	SNX3 (ENSPANG00000045017)	ENSPANG00000017995	NR2E1 (ENSPANG00000016092)	OSTM1 (ENSPANG00000024443)	ENSPANG00000004075	ENSPANG00000044542	RSPH3 (ENSPANG00000015890) #15	TAGAP (ENSPANG00000006087) #16	ENSPANG00000043396	FNDC1 (ENSPANG00000024066) #18	ENSPANG00000046898	ENSPANG00000043348	SOD2 (ENSPANG00000006178)	WTAP (ENSPANG00000018386) #20	ACAT2 (ENSPANG00000006086) #22	ENSPANG00000011086 #21	MRPL18 (ENSPANG00000023667) #23	PNLDC1 (ENSPANG00000022009) #24	MAS1 (ENSPANG00000024549) #25	IGF2R (ENSPANG00000018547) #26	SLC22A1 (ENSPANG00000012323) #27	SLC22A2 (ENSPANG00000008238) #28	SLC22A3 (ENSPANG00000025907) #29	ENSPANG00000033663	ENSPANG00000048497	ENSPANG00000042063	ENSPANG00000038033	PLG (ENSPANG00000007072) #30	MAP3K4 (ENSPANG00000013261) #31	ENSPANG00000050992
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b.`b.a #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034.`c #35
Sooty mangabey	MODERN SPECIES	590	SESN1 (ENSCATG00000025577)	ARMC2 (ENSCATG00000039753)	ENSCATG00000039457	ENSCATG00000039123	AFG1L (ENSCATG00000009873)	SNX3 (ENSCATG00000029122)	NR2E1 (ENSCATG00000040877)	OSTM1 (ENSCATG00000039725)	ENSCATG00000038882	RSPH3 (ENSCATG00000037174) #15	TAGAP (ENSCATG00000031180) #16	FNDC1 (ENSCATG00000041959) #18	SOD2 (ENSCATG00000041741)	ENSCATG00000018577	ENSCATG00000032080 ##20	ENSCATG00000029973 #22	ENSCATG00000040449 #21	MRPL18 (ENSCATG00000039405) #23	PNLDC1 (ENSCATG00000033196) #24	MAS1 (ENSCATG00000018354) #25	ENSCATG00000031955	IGF2R (ENSCATG00000040245) #26	SLC22A1 (ENSCATG00000037974) #27	SLC22A2 (ENSCATG00000035775) #28	SLC22A3 (ENSCATG00000037522) #29	ENSCATG00000036874
Drill	MODERN SPECIES	546	ENSMLEG00000038718	CEP57L1 (ENSMLEG00000042256)	SESN1 (ENSMLEG00000023202)	ARMC2 (ENSMLEG00000028725)	ENSMLEG00000035215	AFG1L (ENSMLEG00000042976)	SNX3 (ENSMLEG00000009064)	NR2E1 (ENSMLEG00000042106)	OSTM1 (ENSMLEG00000042119)	ENSMLEG00000034288	RSPH3 (ENSMLEG00000040694) #15	TAGAP (ENSMLEG00000019766) #16	FNDC1 (ENSMLEG00000036645) #18	SOD2 (ENSMLEG00000031266)	ENSMLEG00000036194 #20	ACAT2 (ENSMLEG00000030278) #22	ENSMLEG00000010006 #21	MRPL18 (ENSMLEG00000009952) #23	PNLDC1 (ENSMLEG00000044059) #24	MAS1 (ENSMLEG00000021239) #25	IGF2R (ENSMLEG00000030426) #26	SLC22A1 (ENSMLEG00000042980) #27	SLC22A2 (ENSMLEG00000016886) #28	SLC22A3 (ENSMLEG00000038788) #29	ENSMLEG00000029985	ENSMLEG00000028757	PLG (ENSMLEG00000043200) #30	MAP3K4 (ENSMLEG00000043276) #31
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00910000148724	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394.i.a #23	ENSGT00940000153167.A.a #24	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37
Pig-tailed macaque	MODERN SPECIES	186	ARMC2 (ENSMNEG00000037523)	ENSMNEG00000041536	ENSMNEG00000040158	AFG1L (ENSMNEG00000044043)	SNX3 (ENSMNEG00000027766)	NR2E1 (ENSMNEG00000034662)	OSTM1 (ENSMNEG00000036298)	ENSMNEG00000041823	RSPH3 (ENSMNEG00000038143) #15	TAGAP (ENSMNEG00000029744) #16	ENSMNEG00000021558	FNDC1 (ENSMNEG00000043137) #18	SOD2 (ENSMNEG00000031749)	ENSMNEG00000027147	ENSMNEG00000034307 #20	ENSMNEG00000032924 #22	ENSMNEG00000041282 #21	ENSMNEG00000045344 #23	PNLDC1 (ENSMNEG00000034271) #24	ENSMNEG00000029146	IGF2R (ENSMNEG00000033736) #26	SLC22A1 (ENSMNEG00000019486) #27	SLC22A2 (ENSMNEG00000034324) #28	SLC22A3 (ENSMNEG00000000785) #29	ENSMNEG00000034918
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00910000148724	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #20	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #21	ENSGT00390000006394.i.a #23	ENSGT00940000153167.A.a #24	ENSGT00390000006707.w.a.a.b	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00910000148333	ENSGT00940000155208 #30
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000060415	AFG1L (ENSMFAG00000041493)	ENSMFAG00000065667	SNX3 (ENSMFAG00000039300)	NR2E1 (ENSMFAG00000001910)	OSTM1 (ENSMFAG00000002698)	RSPH3 (ENSMFAG00000041726) #15	TAGAP (ENSMFAG00000032965) #16	ENSMFAG00000029234	FNDC1 (ENSMFAG00000000932) #18	ENSMFAG00000059093	SOD2 (ENSMFAG00000046278)	ENSMFAG00000053733	WTAP (ENSMFAG00000035453) #20	ENSMFAG00000052244	ENSMFAG00000035657 #22	ENSMFAG00000003456 #21	ENSMFAG00000043173 #23	ENSMFAG00000065624	PNLDC1 (ENSMFAG00000041296) #24	ENSMFAG00000051722	ENSMFAG00000062218	MAS1 (ENSMFAG00000004332) #25	IGF2R (ENSMFAG00000034342) #26	SLC22A1 (ENSMFAG00000033700) #27	SLC22A2 (ENSMFAG00000031849) #28	SLC22A3 (ENSMFAG00000002893) #29	ENSMFAG00000064690	ENSMFAG00000063217	ENSMFAG00000051812 #30	PLG (ENSMFAG00000050264) #30
Rhesus	MODERN SPECIES	14	FOXO3 (ENSMMUG00000020369)	AFG1L (ENSMMUG00000020367)	SNX3 (ENSMMUG00000020366)	NR2E1 (ENSMMUG00000023767)	OSTM1 (ENSMMUG00000022247)	ENSMMUG00000061610	ENSMMUG00000064227	ENSMMUG00000057516	RSPH3 (ENSMMUG00000020011) #15	TAGAP (ENSMMUG00000011994) #16	FNDC1 (ENSMMUG00000000500) #18	SOD2 (ENSMMUG00000050418)	ENSMMUG00000056261	ENSMMUG00000057544	WTAP (ENSMMUG00000012837) #20	ENSMMUG00000012843 #22	TCP1 (ENSMMUG00000012846) #21	MRPL18 (ENSMMUG00000063964) #23	ENSMMUG00000052876	PNLDC1 (ENSMMUG00000004181) #24	MAS1 (ENSMMUG00000016217) #25	IGF2R (ENSMMUG00000015658) #26	SLC22A1 (ENSMMUG00000015662) #27	SLC22A2 (ENSMMUG00000005715) #28	SLC22A3 (ENSMMUG00000005717) #29	ENSMMUG00000016201	PLG (ENSMMUG00000016945) #30	ENSMMUG00000057619	MAP3K4 (ENSMMUG00000006143) #31	AGPAT4 (ENSMMUG00000006147) #33	PRKN (ENSMMUG00000020410) #35
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Macaca	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Pig-tailed macaque	MODERN SPECIES	544	OPRPN (ENSMNEG00000028733)	ENSMNEG00000039328	ENSMNEG00000034690	CABS1 (ENSMNEG00000017822)	CSN3 (ENSMNEG00000031858)	FDCSP (ENSMNEG00000033009)	ODAM (ENSMNEG00000038668)	ENSMNEG00000037247	ENSMNEG00000042173	ENSMNEG00000022627	CSN2 (ENSMNEG00000029544)	CSN1S1 (ENSMNEG00000035277)	SULT1E1 (ENSMNEG00000033099)	SULT1B1 (ENSMNEG00000041803)	UGT2A1 (ENSMNEG00000034176)	ENSMNEG00000041656 #22	ENSMNEG00000038759	ENSMNEG00000044727	UGT2A3 (ENSMNEG00000038674)	ENSMNEG00000036455
Macaca_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Crab-eating macaque	MODERN SPECIES	15	MUC7 (ENSMFAG00000054048)	OPRPN (ENSMFAG00000034306)	ENSMFAG00000037153	CABS1 (ENSMFAG00000053305)	CSN3 (ENSMFAG00000032472)	FDCSP (ENSMFAG00000057683)	ODAM (ENSMFAG00000044753)	PRR27 (ENSMFAG00000045284)	ENSMFAG00000003233	ENSMFAG00000017051	ENSMFAG00000030084	CSN2 (ENSMFAG00000040612)	CSN1S1 (ENSMFAG00000034216)	SULT1E1 (ENSMFAG00000046267)	SULT1B1 (ENSMFAG00000042376)	ENSMFAG00000003287 #22	UGT2A1 (ENSMFAG00000001202)	ENSMFAG00000000958	ENSMFAG00000001869	UGT2B7 (ENSMFAG00000050937)	ENSMFAG00000056775	ENSMFAG00000049858	TMPRSS11E (ENSMFAG00000044534)	YTHDC1 (ENSMFAG00000031927)	TMPRSS11B (ENSMFAG00000025901)	TMPRSS11F (ENSMFAG00000001358)	TMPRSS11A (ENSMFAG00000039434)	TMPRSS11D (ENSMFAG00000035772)	GNRHR (ENSMFAG00000034593)	UBA6 (ENSMFAG00000001344)	STAP1 (ENSMFAG00000000570)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00730000111663	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b
Sooty mangabey	MODERN SPECIES	243	MUC7 (ENSCATG00000040053)	OPRPN (ENSCATG00000034709)	ENSCATG00000032484	SMR3A (ENSCATG00000029579)	CSN3 (ENSCATG00000027983)	FDCSP (ENSCATG00000036774)	ODAM (ENSCATG00000035630)	PRR27 (ENSCATG00000029123)	ENSCATG00000042470	ENSCATG00000040378	STATH (ENSCATG00000035840)	CSN2 (ENSCATG00000033009)	CSN1S1 (ENSCATG00000033444)	SULT1E1 (ENSCATG00000041914)	SULT1B1 (ENSCATG00000034869)	ENSCATG00000041603 #22	UGT2A1 (ENSCATG00000029410)	ENSCATG00000041561	ENSCATG00000032258	ENSCATG00000002647	UGT2A3 (ENSCATG00000038824)	ENSCATG00000003758
Vervet Monkey	MODERN SPECIES	4	SNX9 (ENSCSAG00000013174)	SYNJ2 (ENSCSAG00000013130)	SERAC1 (ENSCSAG00000013012)	GTF2H5 (ENSCSAG00000012998) #7	TULP4 (ENSCSAG00000012991) #9	TMEM181 (ENSCSAG00000012985) #11	ENSCSAG00000012959	DYNLT1 (ENSCSAG00000012907) #12	SYTL3 (ENSCSAG00000012865) #13	EZR (ENSCSAG00000012781) #14	RSPH3 (ENSCSAG00000012703) #15	TAGAP (ENSCSAG00000012667) #16	FNDC1 (ENSCSAG00000012645) #18	SOD2 (ENSCSAG00000012601)	WTAP (ENSCSAG00000012594) #20	ENSCSAG00000012584 #22	TCP1 (ENSCSAG00000012567) #21	MRPL18 (ENSCSAG00000012516) #23	PNLDC1 (ENSCSAG00000012478) #24	ENSCSAG00000012433 #25	MAS1 (ENSCSAG00000012417) #25	IGF2R (ENSCSAG00000012403) #26	SLC22A1 (ENSCSAG00000012377) #27	SLC22A2 (ENSCSAG00000012370) #28	SLC22A3 (ENSCSAG00000012348) #29	LPA (ENSCSAG00000012297)	PLG (ENSCSAG00000012290) #30	MAP3K4 (ENSCSAG00000012282) #31	AGPAT4 (ENSCSAG00000012273) #33	ENSCSAG00000018983	PRKN (ENSCSAG00000012267) #35
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00730000111944	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00730000111944	ENSGT00970000194128	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Vervet Monkey	MODERN SPECIES	26	AMBN (ENSCSAG00000004873)	MUC7 (ENSCSAG00000004879)	OPRPN (ENSCSAG00000004881)	ENSCSAG00000004882	ENSCSAG00000004883	CABS1 (ENSCSAG00000000421)	CSN3 (ENSCSAG00000004887)	FDCSP (ENSCSAG00000004899)	ODAM (ENSCSAG00000004908)	PRR27 (ENSCSAG00000004913)	ENSCSAG00000004916	CSN2 (ENSCSAG00000004921)	CSN1S1 (ENSCSAG00000004930)	SULT1E1 (ENSCSAG00000004937)	SULT1B1 (ENSCSAG00000004940)	ENSCSAG00000000422 #22	UGT2A1 (ENSCSAG00000004944)	UGT2B4 (ENSCSAG00000004947)	DCUN1D4 (ENSCSAG00000004948)	LRRC66 (ENSCSAG00000004952)	SGCB (ENSCSAG00000004955)	SPATA18 (ENSCSAG00000004960)	USP46 (ENSCSAG00000004963)	ERVMER34-1 (ENSCSAG00000000423)	RASL11B (ENSCSAG00000004968)	SCFD2 (ENSCSAG00000004970)	ENSCSAG00000004975	LNX1 (ENSCSAG00000004979)	GSX2 (ENSCSAG00000004981)	PDGFRA (ENSCSAG00000004987)	KIT (ENSCSAG00000004992)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a
Macaca	ANCESTRAL SPECIES	26	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00530000063841.a
Rhesus	MODERN SPECIES	15	ENSMMUG00000061054	OPRPN (ENSMMUG00000002465)	ENSMMUG00000054206	SMR3A (ENSMMUG00000047859)	CABS1 (ENSMMUG00000006708)	ENSMMUG00000039866	CSN3 (ENSMMUG00000006031)	FDCSP (ENSMMUG00000062248)	ODAM (ENSMMUG00000006029)	PRR27 (ENSMMUG00000022269)	ENSMMUG00000048868	CSN2 (ENSMMUG00000004849)	CSN1S1 (ENSMMUG00000047324)	SULT1E1 (ENSMMUG00000004667)	SULT1B1 (ENSMMUG00000062115)	ENSMMUG00000030261 #22	UGT2A1 (ENSMMUG00000004183)	ENSMMUG00000000337	ENSMMUG00000014773	UGT2A3 (ENSMMUG00000047053)	UGT2B7 (ENSMMUG00000012355)	TMPRSS11E (ENSMMUG00000011103)	YTHDC1 (ENSMMUG00000002265)	TMPRSS11B (ENSMMUG00000060914)	TMPRSS11F (ENSMMUG00000020312)	TMPRSS11A (ENSMMUG00000000552)	TMPRSS11D (ENSMMUG00000050011)	GNRHR (ENSMMUG00000003779)	UBA6 (ENSMMUG00000003776)	STAP1 (ENSMMUG00000009392)	CENPC (ENSMMUG00000009390)
Rhinopithecus	ANCESTRAL SPECIES	409									ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000165281	ENSGT00940000158332.a.b.c	ENSGT00940000162432
Golden snub-nosed monkey	MODERN SPECIES	1600									ENSRROG00000041864	ENSRROG00000039124	STATH (ENSRROG00000036329)	CSN2 (ENSRROG00000039742)	CSN1S1 (ENSRROG00000037818)	SULT1E1 (ENSRROG00000045146)	SULT1B1 (ENSRROG00000031828)	ENSRROG00000045770 #22	UGT2A1 (ENSRROG00000040776)	ENSRROG00000032012
Black snub-nosed monkey	MODERN SPECIES	743																ENSRBIG00000034226 #22	UGT2A1 (ENSRBIG00000043750)	ENSRBIG00000032766	ENSRBIG00000022354	ENSRBIG00000017711	UGT2A3 (ENSRBIG00000034168)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.c.a	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.x.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877.h	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.c.a	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.x.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877.h	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00390000013264.c.a	ENSGT00940000155913 #9	ENSGT00910000147301	ENSGT00390000007183 #11	ENSGT00940000154531.x.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877.h	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Capuchin	MODERN SPECIES	6	GTF2H5 (ENSCCAG00000030667) #7	ENSCCAG00000031330	TULP4 (ENSCCAG00000028211) #9	ENSCCAG00000013481	TMEM181 (ENSCCAG00000022105) #11	DYNLT1 (ENSCCAG00000035503) #12	ENSCCAG00000007021	SYTL3 (ENSCCAG00000034836) #13	EZR (ENSCCAG00000029069) #14	ENSCCAG00000029457	RSPH3 (ENSCCAG00000035584) #15	TAGAP (ENSCCAG00000036010) #16	FNDC1 (ENSCCAG00000021952) #18	SOD2 (ENSCCAG00000025254)	WTAP (ENSCCAG00000021303) #20	ACAT2 (ENSCCAG00000034076) #22	TCP1 (ENSCCAG00000028316) #21	MRPL18 (ENSCCAG00000027672) #23	PNLDC1 (ENSCCAG00000026232) #24	MAS1 (ENSCCAG00000012059) #25	IGF2R (ENSCCAG00000010739) #26	SLC22A1 (ENSCCAG00000030320) #27	SLC22A2 (ENSCCAG00000020700) #28	SLC22A3 (ENSCCAG00000035674) #29	PLG (ENSCCAG00000034420) #30	MAP3K4 (ENSCCAG00000028977) #31	AGPAT4 (ENSCCAG00000022357) #33	PRKN (ENSCCAG00000024514) #35	PACRG (ENSCCAG00000034067) #37	QKI (ENSCCAG00000025230)
Bolivian squirrel monkey	MODERN SPECIES	101	SNX9 (ENSSBOG00000025360)	SYNJ2 (ENSSBOG00000034876)	SERAC1 (ENSSBOG00000027520)	ENSSBOG00000028859 #7	ENSSBOG00000035325	TULP4 (ENSSBOG00000032404) #9	TMEM181 (ENSSBOG00000025017) #11	ENSSBOG00000025349 #12	SYTL3 (ENSSBOG00000017382) #13	EZR (ENSSBOG00000025519) #14	RSPH3 (ENSSBOG00000019792) #15	TAGAP (ENSSBOG00000030452) #16	FNDC1 (ENSSBOG00000027676) #18	ENSSBOG00000033881	ENSSBOG00000017833 #20	ACAT2 (ENSSBOG00000035773) #22	TCP1 (ENSSBOG00000022736) #21	MRPL18 (ENSSBOG00000017384) #23	PNLDC1 (ENSSBOG00000019135) #24	MAS1 (ENSSBOG00000019912) #25	IGF2R (ENSSBOG00000024078) #26	SLC22A1 (ENSSBOG00000029054) #27	SLC22A2 (ENSSBOG00000035664) #28	SLC22A3 (ENSSBOG00000024841) #29	PLG (ENSSBOG00000033802) #30	MAP3K4 (ENSSBOG00000022969) #31	AGPAT4 (ENSSBOG00000023179) #33	PRKN (ENSSBOG00000019735) #35	PACRG (ENSSBOG00000036098) #37	QKI (ENSSBOG00000036267)	C6orf118 (ENSSBOG00000024744)
Marmoset	MODERN SPECIES	16	ENSCJAG00000070434	TULP4 (ENSCJAG00000003653) #9	ENSCJAG00000059699	TMEM181 (ENSCJAG00000047353) #11	ENSCJAG00000072282	DYNLT1 (ENSCJAG00000077634) #12	SYTL3 (ENSCJAG00000003730) #13	EZR (ENSCJAG00000003763) #14	ENSCJAG00000047099	ENSCJAG00000071144	RSPH3 (ENSCJAG00000011581) #15	TAGAP (ENSCJAG00000011616) #16	FNDC1 (ENSCJAG00000011622) #18	SOD2 (ENSCJAG00000011664)	WTAP (ENSCJAG00000011722) #20	ACAT2 (ENSCJAG00000011777) #22	TCP1 (ENSCJAG00000011792) #21	MRPL18 (ENSCJAG00000011859) #23	PNLDC1 (ENSCJAG00000011865) #24	ENSCJAG00000081097	IGF2R (ENSCJAG00000011908) #26	SLC22A2 (ENSCJAG00000012056) #28	SLC22A3 (ENSCJAG00000012093) #29	PLG (ENSCJAG00000012132) #30	ENSCJAG00000084439	MAP3K4 (ENSCJAG00000012176) #31	AGPAT4 (ENSCJAG00000012323) #33	PRKN (ENSCJAG00000012355) #35	PACRG (ENSCJAG00000012365) #37	QKI (ENSCJAG00000012368)	ENSCJAG00000077202
Mas night monkey	MODERN SPECIES	265	SERAC1 (ENSANAG00000032062)	GTF2H5 (ENSANAG00000029980) #7	ENSANAG00000033750	TULP4 (ENSANAG00000032456) #9	TMEM181 (ENSANAG00000021664) #11	ENSANAG00000016873 #12	SYTL3 (ENSANAG00000021648) #13	EZR (ENSANAG00000022176) #14	ENSANAG00000028817	ENSANAG00000033290	RSPH3 (ENSANAG00000021629) #15	TAGAP (ENSANAG00000023564) #16	FNDC1 (ENSANAG00000028811) #18	SOD2 (ENSANAG00000024525)	WTAP (ENSANAG00000027064) #20	ACAT2 (ENSANAG00000030553) #22	TCP1 (ENSANAG00000033987) #21	MRPL18 (ENSANAG00000033398) #23	PNLDC1 (ENSANAG00000034713) #24	MAS1 (ENSANAG00000019902) #25	IGF2R (ENSANAG00000031865) #26	SLC22A1 (ENSANAG00000038334) #27	SLC22A2 (ENSANAG00000030328) #28	SLC22A3 (ENSANAG00000030361) #29	PLG (ENSANAG00000030380) #30	MAP3K4 (ENSANAG00000030551) #31	AGPAT4 (ENSANAG00000037521) #33	PRKN (ENSANAG00000032287) #35	ENSANAG00000019305	PACRG (ENSANAG00000020727) #37	QKI (ENSANAG00000029669)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Suina	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00940000156543
Chacoan peccary	MODERN SPECIES	58	ZDHHC14 (ENSCWAG00000003840)	SNX9 (ENSCWAG00000003804)	SYNJ2 (ENSCWAG00000003712)	SERAC1 (ENSCWAG00000003601)	GTF2H5 (ENSCWAG00000003578) #7	TULP4 (ENSCWAG00000003534) #9	TMEM181 (ENSCWAG00000003377) #11	DYNLT1 (ENSCWAG00000003343) #12	SYTL3 (ENSCWAG00000003293) #13	EZR (ENSCWAG00000003256) #14	RSPH3 (ENSCWAG00000003227) #15	ENSCWAG00000003211 #16	FNDC1 (ENSCWAG00000003188) #18	SOD2 (ENSCWAG00000003162)	WTAP (ENSCWAG00000003142) #20	ACAT2 (ENSCWAG00000003116) #22	TCP1 (ENSCWAG00000003074) #21	MRPL18 (ENSCWAG00000003059) #23	PNLDC1 (ENSCWAG00000003002) #24	ENSCWAG00000002985	MAS1 (ENSCWAG00000002975) #25	IGF2R (ENSCWAG00000002925) #26	SLC22A1 (ENSCWAG00000002901) #27	SLC22A2 (ENSCWAG00000002880) #28	SLC22A3 (ENSCWAG00000002861) #29	ENSCWAG00000002821 #30	MAP3K4 (ENSCWAG00000002506) #31	AGPAT4 (ENSCWAG00000002443) #33	ENSCWAG00000002429 #35
Pig	MODERN SPECIES		ZDHHC14 (ENSSSCG00000035027)	SNX9 (ENSSSCG00000030535)	SYNJ2 (ENSSSCG00000012315)	SERAC1 (ENSSSCG00000012314)	GTF2H5 (ENSSSCG00000024019) #7	ENSSSCG00000031776 #9	TMEM181 (ENSSSCG00000024876) #11	DYNLT1 (ENSSSCG00000033107) #12	SYTL3 (ENSSSCG00000004057) #13	EZR (ENSSSCG00000004058) #14	RSPH3 (ENSSSCG00000004055) #15	TAGAP (ENSSSCG00000004053) #16	FNDC1 (ENSSSCG00000004052) #18	SOD2 (ENSSSCG00000040317)	WTAP (ENSSSCG00000004050) #20	ACAT2 (ENSSSCG00000004049) #22	TCP1 (ENSSSCG00000004048) #21	MRPL18 (ENSSSCG00000004047) #23	PNLDC1 (ENSSSCG00000004046) #24	MAS1 (ENSSSCG00000059431) #25	IGF2R (ENSSSCG00000004044) #26	SLC22A1 (ENSSSCG00000004041) #27	SLC22A2 (ENSSSCG00000004040) #28	SLC22A3 (ENSSSCG00000004039) #29	PLG (ENSSSCG00000004038) #30	MAP3K4 (ENSSSCG00000004037) #31	AGPAT4 (ENSSSCG00000004033) #33	ENSSSCG00000053549	PRKN (ENSSSCG00000004032) #35	ENSSSCG00000047165	PACRG (ENSSSCG00000038153) #37
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Arabian camel	MODERN SPECIES	34	ZDHHC14 (ENSCDRG00005018018)	SNX9 (ENSCDRG00005017884)	SYNJ2 (ENSCDRG00005016839)	SERAC1 (ENSCDRG00005016470)	GTF2H5 (ENSCDRG00005016408) #7	ENSCDRG00005016299 #9	TMEM181 (ENSCDRG00005015875) #11	ENSCDRG00005015822 #12	SYTL3 (ENSCDRG00005015709) #13	ENSCDRG00005015561 #14	RSPH3 (ENSCDRG00005015431) #15	TAGAP (ENSCDRG00005015381) #16	FNDC1 (ENSCDRG00005015292) #18	MnSOD (ENSCDRG00005015180)	WTAP (ENSCDRG00005015081) #20	ACAT2 (ENSCDRG00005015012) #22	TCP1 (ENSCDRG00005014875) #21	MRPL18 (ENSCDRG00005014810) #23	PNLDC1 (ENSCDRG00005014558) #24	MAS1 (ENSCDRG00005014532) #25	IGF2R (ENSCDRG00005014304) #26	SLC22A1 (ENSCDRG00005014227) #27	SLC22A2 (ENSCDRG00005014141) #28	SLC22A3 (ENSCDRG00005014054) #29	ENSCDRG00005013803 #30	MAP3K4 (ENSCDRG00005011806) #31	AGPAT4 (ENSCDRG00005011648) #33	PRKN (ENSCDRG00005010399) #35	PACRG (ENSCDRG00005010327) #37	QKI (ENSCDRG00005010246)	C6orf118 (ENSCDRG00005010197)
Alpaca	MODERN SPECIES	3586														SOD2 (ENSVPAG00000008201)	WTAP (ENSVPAG00000008205) #20	ACAT2 (ENSVPAG00000008207) #22	TCP1 (ENSVPAG00000008209) #21	MRPL18 (ENSVPAG00000008211) #23	ENSVPAG00000008213
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT01010000229882	ENSGT00390000007183 #11	ENSGT00940000154531.k.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017281.j	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00950000186343	ENSGT00940000157330 #37	ENSGT00940000155310.b
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT01010000229882	ENSGT00390000007183 #11	ENSGT00940000154531.k.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017281.j	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT01010000229882	ENSGT00390000007183 #11	ENSGT00940000154531.k.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017281.j	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT01010000229882	ENSGT00390000007183 #11	ENSGT00940000154531.k.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017281.j	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT01010000229882	ENSGT00390000007183 #11	ENSGT00940000154531.k.b #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000017281.j	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Beluga whale	MODERN SPECIES	80	SNX9 (ENSDLEG00000012695)	SYNJ2 (ENSDLEG00000012744)	SERAC1 (ENSDLEG00000012822)	GTF2H5 (ENSDLEG00000012851) #7	TULP4 (ENSDLEG00000012862) #9	TMEM181 (ENSDLEG00000012897) #11	DYNLT1 (ENSDLEG00000012925) #12	SYTL3 (ENSDLEG00000012934) #13	EZR (ENSDLEG00000012951) #14	RSPH3 (ENSDLEG00000013000) #15	TAGAP (ENSDLEG00000013116) #16	ENSDLEG00000013131 #18	ENSDLEG00000013163	SOD2 (ENSDLEG00000013188)	WTAP (ENSDLEG00000013205) #20	ACAT2 (ENSDLEG00000013224) #22	TCP1 (ENSDLEG00000013249) #21	MRPL18 (ENSDLEG00000013282) #23	PNLDC1 (ENSDLEG00000013298) #24	MAS1 (ENSDLEG00000013351) #25	IGF2R (ENSDLEG00000013373) #26	SLC22A1 (ENSDLEG00000013591) #27	SLC22A2 (ENSDLEG00000013647) #28	SLC22A3 (ENSDLEG00000013670) #29	PLG (ENSDLEG00000013736) #30	MAP3K4 (ENSDLEG00000013778) #31	AGPAT4 (ENSDLEG00000013962) #33	ENSDLEG00000014031	ENSDLEG00000014046	ENSDLEG00000014063	ENSDLEG00000014077 #37
Narwhal	MODERN SPECIES	301	SYNJ2 (ENSMMNG00015010674)	SERAC1 (ENSMMNG00015010803)	GTF2H5 (ENSMMNG00015010910) #7	TULP4 (ENSMMNG00015010941) #9	ENSMMNG00015010987	TMEM181 (ENSMMNG00015011008) #11	ENSMMNG00015011048 #12	SYTL3 (ENSMMNG00015011069) #13	EZR (ENSMMNG00015011090) #14	RSPH3 (ENSMMNG00015011129) #15	TAGAP (ENSMMNG00015011155) #16	FNDC1 (ENSMMNG00015011181) #18	ENSMMNG00015011212	SOD2 (ENSMMNG00015011230)	WTAP (ENSMMNG00015011260) #20	ACAT2 (ENSMMNG00015011293) #22	TCP1 (ENSMMNG00015011321) #21	MRPL18 (ENSMMNG00015011349) #23	PNLDC1 (ENSMMNG00015011367) #24	MAS1 (ENSMMNG00015011391) #25	IGF2R (ENSMMNG00015011406) #26	SLC22A1 (ENSMMNG00015011429) #27	ENSMMNG00015011446	SLC22A2 (ENSMMNG00015011459) #28	SLC22A3 (ENSMMNG00015011477) #29	ENSMMNG00015011493 #30	MAP3K4 (ENSMMNG00015011572) #31	AGPAT4 (ENSMMNG00015011728) #33	ENSMMNG00015011816	PACRG (ENSMMNG00015011827) #37	QKI (ENSMMNG00015011839)
Vaquita	MODERN SPECIES	3	ENSPSNG00000020609	SYNJ2 (ENSPSNG00000020311)	SERAC1 (ENSPSNG00000020095)	GTF2H5 (ENSPSNG00000020011) #7	TULP4 (ENSPSNG00000019944) #9	TMEM181 (ENSPSNG00000019785) #11	ENSPSNG00000019724 #12	SYTL3 (ENSPSNG00000019533) #13	EZR (ENSPSNG00000019386) #14	RSPH3 (ENSPSNG00000019104) #15	TAGAP (ENSPSNG00000018854) #16	FNDC1 (ENSPSNG00000018682) #18	ENSPSNG00000018560	SOD2 (ENSPSNG00000018468)	WTAP (ENSPSNG00000018363) #20	ACAT2 (ENSPSNG00000018304) #22	TCP1 (ENSPSNG00000018222) #21	MRPL18 (ENSPSNG00000018155) #23	PNLDC1 (ENSPSNG00000017839) #24	MAS1 (ENSPSNG00000017797) #25	IGF2R (ENSPSNG00000017592) #26	ENSPSNG00000017517 #27	ENSPSNG00000017468	SLC22A2 (ENSPSNG00000017306) #28	SLC22A3 (ENSPSNG00000017154) #29	ENSPSNG00000016905 #30	MAP3K4 (ENSPSNG00000016678) #31	AGPAT4 (ENSPSNG00000016495) #33	ENSPSNG00000016413	ENSPSNG00000016356	PRKN (ENSPSNG00000015749) #35
Dolphin	MODERN SPECIES	3445														ENSTTRG00000010355	WTAP (ENSTTRG00000010379) #20	ACAT2 (ENSTTRG00000010389) #22	TCP1 (ENSTTRG00000010393) #21	MRPL18 (ENSTTRG00000010404) #23	PNLDC1 (ENSTTRG00000010409) #24
Sperm whale	MODERN SPECIES	421																ACAT2 (ENSPCTG00005022140) #22	ENSPCTG00005022124 #21	MRPL18 (ENSPCTG00005022113) #23	PNLDC1 (ENSPCTG00005022102) #24
Blue whale	MODERN SPECIES	3	SYNJ2 (ENSBMSG00010011701)	SERAC1 (ENSBMSG00010011654)	GTF2H5 (ENSBMSG00010011624) #7	TULP4 (ENSBMSG00010011601) #9	ENSBMSG00010011592	TMEM181 (ENSBMSG00010011555) #11	ENSBMSG00010011520 #12	SYTL3 (ENSBMSG00010011475) #13	EZR (ENSBMSG00010011421) #14	RSPH3 (ENSBMSG00010011388) #15	TAGAP (ENSBMSG00010011351) #16	FNDC1 (ENSBMSG00010011227) #18	ENSBMSG00010011186	ENSBMSG00010011159	ENSBMSG00010011125 #20	ACAT2 (ENSBMSG00010011102) #22	TCP1 (ENSBMSG00010011064) #21	MRPL18 (ENSBMSG00010011042) #23	PNLDC1 (ENSBMSG00010010984) #24	MAS1 (ENSBMSG00010010947) #25	IGF2R (ENSBMSG00010010889) #26	ENSBMSG00010010858	SLC22A1 (ENSBMSG00010010839) #27	SLC22A2 (ENSBMSG00010010814) #28	SLC22A3 (ENSBMSG00010010779) #29	ENSBMSG00010010741 #30	MAP3K4 (ENSBMSG00010010709) #31	AGPAT4 (ENSBMSG00010010688) #33	ENSBMSG00010010664	PRKN (ENSBMSG00010010461) #35	ENSBMSG00010010418
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Yarkand deer	MODERN SPECIES	18	GTF2H5 (ENSCHYG00000017957) #7	TULP4 (ENSCHYG00000018070) #9	ENSCHYG00000018795	ENSCHYG00000018828	TMEM181 (ENSCHYG00000018947) #11	ENSCHYG00000020249	ENSCHYG00000020272 #12	SYTL3 (ENSCHYG00000020333) #13	ENSCHYG00000020511 #14	RSPH3 (ENSCHYG00000020694) #15	TAGAP (ENSCHYG00000020890) #16	ENSCHYG00000021069	FNDC1 (ENSCHYG00000021187) #18	ENSCHYG00000022090	WTAP (ENSCHYG00000022403) #20	ACAT2 (ENSCHYG00000022487) #22	TCP1 (ENSCHYG00000022554) #21	MRPL18 (ENSCHYG00000022773) #23	PNLDC1 (ENSCHYG00000022800) #24	MAS1 (ENSCHYG00000022925) #25	IGF2R (ENSCHYG00000023202) #26	SLC22A1 (ENSCHYG00000025285) #27	SLC22A2 (ENSCHYG00000025351) #28	SLC22A3 (ENSCHYG00000025420) #29	ENSCHYG00000025465 #30	MAP3K4 (ENSCHYG00000025579) #31	AGPAT4 (ENSCHYG00000025772) #33	PRKN (ENSCHYG00000025824) #35	PACRG (ENSCHYG00000025979) #37	QKI (ENSCHYG00000026014)	C6orf118 (ENSCHYG00000026045)
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00940000157993.l #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.l #16	ENSGT00530000063558.B #18	ENSGT00390000013558.z	ENSGT00390000006208.a.f	ENSGT00390000011877	ENSGT00390000013931.a.b.b.d #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Goat	DUPLICATION
Goat	MODERN SPECIES	5	FABP9 (ENSCHIG00000013859)	PMP2 (ENSCHIG00000017466)	ENSCHIG00000022058	PAG1 (ENSCHIG00000005882)	ZNF704 (ENSCHIG00000009329)	ZBTB10 (ENSCHIG00000008950)	TPD52 (ENSCHIG00000016090)	MRPS28 (ENSCHIG00000018727)	HEY1 (ENSCHIG00000021515)	STMN2 (ENSCHIG00000014257)	ENSCHIG00000022803	IL7 (ENSCHIG00000013214)	ZC2HC1A (ENSCHIG00000022396)	PKIA (ENSCHIG00000022780)	ENSCHIG00000026486	ENSCHIG00000017797 #22	ENSCHIG00000012572	ENSCHIG00000024972	PEX2 (ENSCHIG00000011681)	ZFHX4 (ENSCHIG00000017123)	ENSCHIG00000020169	HNF4G (ENSCHIG00000001150)	CRISPLD1 (ENSCHIG00000016652)	PI15 (ENSCHIG00000016089)	GDAP1 (ENSCHIG00000006756)	JPH1 (ENSCHIG00000017967)	ENSCHIG00000017122	LY96 (ENSCHIG00000012530)	TMEM70 (ENSCHIG00000019890)	ELOC (ENSCHIG00000015198)	UBE2W (ENSCHIG00000025248)
Goat	MODERN SPECIES	28	SYNJ2 (ENSCHIG00000011077)	SERAC1 (ENSCHIG00000013202)	GTF2H5 (ENSCHIG00000000966) #7	TULP4 (ENSCHIG00000003373) #9	TMEM181 (ENSCHIG00000023369) #11	DYNLT1 (ENSCHIG00000026680) #12	SYTL3 (ENSCHIG00000016283) #13	EZR (ENSCHIG00000017900) #14	RSPH3 (ENSCHIG00000018819) #15	TAGAP (ENSCHIG00000008817) #16	FNDC1 (ENSCHIG00000023614) #18	ENSCHIG00000020625	ENSCHIG00000010882	SOD2 (ENSCHIG00000009947)	ENSCHIG00000026430 #20	ENSCHIG00000017426 #22	TCP1 (ENSCHIG00000016503) #21	ENSCHIG00000023286 #23	PNLDC1 (ENSCHIG00000003141) #24	MAS1 (ENSCHIG00000012964) #25	IGF2R (ENSCHIG00000010830) #26	SLC22A1 (ENSCHIG00000014819) #27	SLC22A2 (ENSCHIG00000006824) #28	SLC22A3 (ENSCHIG00000021136) #29	ENSCHIG00000011198 #30	MAP3K4 (ENSCHIG00000009330) #31	ENSCHIG00000024395	AGPAT4 (ENSCHIG00000016729) #33	ENSCHIG00000020982 #35	ENSCHIG00000025260 #35	ENSCHIG00000016416 #35
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	25	FABP4 (ENSOARG00020017607)	FABP9 (ENSOARG00020017569)	PMP2 (ENSOARG00020017455)	ENSOARG00020017413	PAG1 (ENSOARG00020017273)	ZNF704 (ENSOARG00020017158)	ENSOARG00020017111	ZBTB10 (ENSOARG00020016760)	MRPS28 (ENSOARG00020016516)	HEY1 (ENSOARG00020016436)	STMN2 (ENSOARG00020016309)	ENSOARG00020016227	IL7 (ENSOARG00020016028)	ZC2HC1A (ENSOARG00020015884)	ENSOARG00020015830	ENSOARG00020015780 #22	ENSOARG00020015710	PEX2 (ENSOARG00020015627)	ENSOARG00020015601	ZFHX4 (ENSOARG00020015358)	HNF4G (ENSOARG00020015145)	CRISPLD1 (ENSOARG00020014832)	PI15 (ENSOARG00020014740)	GDAP1 (ENSOARG00020014639)	JPH1 (ENSOARG00020014507)	ENSOARG00020014381	ENSOARG00020014341	ENSOARG00020014317	LY96 (ENSOARG00020014177)	TMEM70 (ENSOARG00020014121)	ENSOARG00020014058
Rambouillet Sheep	MODERN SPECIES	24	RPS25 (ENSOARG00020004228)	SYNJ2 (ENSOARG00020004254)	SERAC1 (ENSOARG00020004385)	GTF2H5 (ENSOARG00020004781) #7	TULP4 (ENSOARG00020004840) #9	TMEM181 (ENSOARG00020005095) #11	DYNLT1 (ENSOARG00020005652) #12	SYTL3 (ENSOARG00020005678) #13	ENSOARG00020005804 #14	RSPH3 (ENSOARG00020005842) #15	TAGAP (ENSOARG00020005923) #16	ENSOARG00020005992	ENSOARG00020006017	SOD2 (ENSOARG00020006059)	WTAP (ENSOARG00020006133) #20	ENSOARG00020006176 #22	TCP1 (ENSOARG00020006218) #21	MRPL18 (ENSOARG00020006305) #23	PNLDC1 (ENSOARG00020006365) #24	MAS1 (ENSOARG00020006641) #25	IGF2R (ENSOARG00020007810) #26	SLC22A1 (ENSOARG00020025899) #27	SLC22A2 (ENSOARG00020025906) #28	SLC22A3 (ENSOARG00020025917) #29	ENSOARG00020025929 #30	MAP3K4 (ENSOARG00020025996) #31	AGPAT4 (ENSOARG00020026075) #33	PRKN (ENSOARG00020026093) #35	PACRG (ENSOARG00020026098) #37	ENSOARG00020026099	QKI (ENSOARG00020026100)
Bovinae	ANCESTRAL SPECIES	35	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00940000157993.l #16	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
American bison	DUPLICATION
American bison	MODERN SPECIES	3189												ENSBBBG00000012509	IL7 (ENSBBBG00000012552)	ZC2HC1A (ENSBBBG00000012569)	PKIA (ENSBBBG00000001856)	ENSBBBG00000002409 #22	ENSBBBG00000001846	ENSBBBG00000012605
American bison	MODERN SPECIES	3071	SERAC1 (ENSBBBG00000011692)	GTF2H5 (ENSBBBG00000011523) #7	TULP4 (ENSBBBG00000011517) #9	TMEM181 (ENSBBBG00000011458) #11	DYNLT1 (ENSBBBG00000011420) #12	SYTL3 (ENSBBBG00000011406) #13	EZR (ENSBBBG00000002067) #14	RSPH3 (ENSBBBG00000011334) #15	ENSBBBG00000002057 #16	ENSBBBG00000011303 #16	FNDC1 (ENSBBBG00000002055) #18	ENSBBBG00000011265	ENSBBBG00000011260	SOD2 (ENSBBBG00000011253)	ENSBBBG00000011243 #20	ENSBBBG00000011209 #22	TCP1 (ENSBBBG00000002025) #21	MRPL18 (ENSBBBG00000011166) #23	PNLDC1 (ENSBBBG00000011161) #24	MAS1 (ENSBBBG00000011119) #25	IGF2R (ENSBBBG00000011115) #26	SLC22A1 (ENSBBBG00000011081) #27	SLC22A2 (ENSBBBG00000011068) #28	SLC22A3 (ENSBBBG00000011059) #29	ENSBBBG00000011051 #30	MAP3K4 (ENSBBBG00000001982) #31	ENSBBBG00000010920
Bos	ANCESTRAL SPECIES	19	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531.j #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00940000157993.l #16	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Bos_b	ANCESTRAL SPECIES	42	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531.j #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00530000063558.B #18	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	5	CCN3 (ENSBIXG00005005725)	FABP12 (ENSBIXG00005005844)	FABP4 (ENSBIXG00005016838)	PMP2 (ENSBIXG00005002728)	FABP5 (ENSBIXG00005005727)	PAG1 (ENSBIXG00005016895)	ENSBIXG00005016921	ZBTB10 (ENSBIXG00005017084)	TPD52 (ENSBIXG00005017399)	MRPS28 (ENSBIXG00005017444)	HEY1 (ENSBIXG00005017496)	STMN2 (ENSBIXG00005017543)	IL7 (ENSBIXG00005017701)	ZC2HC1A (ENSBIXG00005017733)	PKIA (ENSBIXG00005017754)	ENSBIXG00005006362 #22	ENSBIXG00005017861	ENSBIXG00005017889	ENSBIXG00005006242	ENSBIXG00005017941	PEX2 (ENSBIXG00005017958)	ZFHX4 (ENSBIXG00005002922)	HNF4G (ENSBIXG00005018048)	ENSBIXG00005018061	CRISPLD1 (ENSBIXG00005002938)	PI15 (ENSBIXG00005018163)	GDAP1 (ENSBIXG00005018202)	JPH1 (ENSBIXG00005018221)	ENSBIXG00005002956	ENSBIXG00005002958	LY96 (ENSBIXG00005005658)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005017210	SERAC1 (ENSBIXG00005017174)	ENSBIXG00005016761 #7	ENSBIXG00005016735	TULP4 (ENSBIXG00005016689) #9	TMEM181 (ENSBIXG00005016376) #11	DYNLT1 (ENSBIXG00005002539) #12	SYTL3 (ENSBIXG00005015982) #13	EZR (ENSBIXG00005002517) #14	RSPH3 (ENSBIXG00005002509) #15	TAGAP (ENSBIXG00005015864) #16	FNDC1 (ENSBIXG00005002485) #18	ENSBIXG00005006566	ENSBIXG00005005505	WTAP (ENSBIXG00005015616) #20	ENSBIXG00005015570 #22	ENSBIXG00005006136	TCP1 (ENSBIXG00005015526) #21	MRPL18 (ENSBIXG00005015451) #23	PNLDC1 (ENSBIXG00005015403) #24	MAS1 (ENSBIXG00005015332) #25	IGF2R (ENSBIXG00005015279) #26	SLC22A1 (ENSBIXG00005015034) #27	SLC22A2 (ENSBIXG00005006381) #28	SLC22A3 (ENSBIXG00005014926) #29	ENSBIXG00005007542 #30	MAP3K4 (ENSBIXG00005002084) #31	ENSBIXG00005006130	AGPAT4 (ENSBIXG00005014474) #33	PRKN (ENSBIXG00005007712) #35	PACRG (ENSBIXG00005013833) #37
Cow	DUPLICATION
Cow	MODERN SPECIES	5	FABP9 (ENSBTAG00000039718)	PMP2 (ENSBTAG00000000071)	FABP5 (ENSBTAG00000047330)	PAG1 (ENSBTAG00000014026)	ZNF704 (ENSBTAG00000021743)	ENSBTAG00000053020	ZBTB10 (ENSBTAG00000003339)	TPD52 (ENSBTAG00000007335)	MRPS28 (ENSBTAG00000001302)	HEY1 (ENSBTAG00000015717)	ENSBTAG00000032812	STMN2 (ENSBTAG00000020099)	IL7 (ENSBTAG00000016284)	ZC2HC1A (ENSBTAG00000018902)	PKIA (ENSBTAG00000008150)	ENSBTAG00000009539 #22	ENSBTAG00000050099	ENSBTAG00000039499	ENSBTAG00000032831	PEX2 (ENSBTAG00000003885)	ZFHX4 (ENSBTAG00000033268)	HNF4G (ENSBTAG00000008280)	CRISPLD1 (ENSBTAG00000004411)	PI15 (ENSBTAG00000019587)	GDAP1 (ENSBTAG00000012608)	JPH1 (ENSBTAG00000008842)	ENSBTAG00000032944	ENSBTAG00000048533	LY96 (ENSBTAG00000008864)	TMEM70 (ENSBTAG00000012920)	ELOC (ENSBTAG00000050514)
Cow	MODERN SPECIES	28	SERAC1 (ENSBTAG00000011509)	GTF2H5 (ENSBTAG00000008543) #7	TULP4 (ENSBTAG00000005083) #9	ENSBTAG00000045898	TMEM181 (ENSBTAG00000010838) #11	ENSBTAG00000004472 #12	SYTL3 (ENSBTAG00000010334) #13	EZR (ENSBTAG00000010347) #14	RSPH3 (ENSBTAG00000005955) #15	TAGAP (ENSBTAG00000031701) #16	FNDC1 (ENSBTAG00000003938) #18	ENSBTAG00000048338	ENSBTAG00000052316	SOD2 (ENSBTAG00000006523)	WTAP (ENSBTAG00000007974) #20	ACAT2 (ENSBTAG00000002827) #22	TCP1 (ENSBTAG00000002829) #21	MRPL18 (ENSBTAG00000001289) #23	PNLDC1 (ENSBTAG00000015166) #24	MAS1 (ENSBTAG00000031724) #25	IGF2R (ENSBTAG00000002402) #26	SLC22A1 (ENSBTAG00000008540) #27	SLC22A2 (ENSBTAG00000009583) #28	SLC22A3 (ENSBTAG00000039080) #29	PLG (ENSBTAG00000001271) #30	MAP3K4 (ENSBTAG00000020079) #31	ENSBTAG00000052236	AGPAT4 (ENSBTAG00000007668) #33	PRKN (ENSBTAG00000018996) #35	PACRG (ENSBTAG00000011106) #37	QKI (ENSBTAG00000011593)
Bos_a	ANCESTRAL SPECIES	54	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531.j #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.k #16	ENSGT00940000157993.l #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Wild yak	MODERN SPECIES	1168	SERAC1 (ENSBMUG00000001963)	GTF2H5 (ENSBMUG00000002023) #7	ENSBMUG00000002042 #9	TMEM181 (ENSBMUG00000002081) #11	ENSBMUG00000002110 #12	SYTL3 (ENSBMUG00000002194) #13	EZR (ENSBMUG00000002231) #14	RSPH3 (ENSBMUG00000002272) #15	ENSBMUG00000002298 #16	ENSBMUG00000002323 #16	FNDC1 (ENSBMUG00000002609) #18	ENSBMUG00000002677	ENSBMUG00000002680	SOD2 (ENSBMUG00000002696)	ENSBMUG00000002743 #20	ACAT2 (ENSBMUG00000002762) #22	TCP1 (ENSBMUG00000002835) #21	MRPL18 (ENSBMUG00000002874) #23	PNLDC1 (ENSBMUG00000002939) #24	MAS1 (ENSBMUG00000002956) #25	IGF2R (ENSBMUG00000003027) #26	SLC22A1 (ENSBMUG00000003078) #27	SLC22A2 (ENSBMUG00000003107) #28	SLC22A3 (ENSBMUG00000003131) #29	ENSBMUG00000003160 #30	MAP3K4 (ENSBMUG00000003212) #31	ENSBMUG00000003268	ENSBMUG00000003343 #33
Domestic yak	DUPLICATION
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	9	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)	LY96 (ENSBGRG00000015389)
Domestic yak	MODERN SPECIES	9	FABP5 (ENSBGRG00000019123)	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)
Domestic yak	MODERN SPECIES	1	SNX9 (ENSBGRG00000026688)	SYNJ2 (ENSBGRG00000026679)	SERAC1 (ENSBGRG00000026663)	ENSBGRG00000026645 #7	TULP4 (ENSBGRG00000026640) #9	TMEM181 (ENSBGRG00000026630) #11	DYNLT1 (ENSBGRG00000026623) #12	SYTL3 (ENSBGRG00000026617) #13	EZR (ENSBGRG00000026603) #14	RSPH3 (ENSBGRG00000026600) #15	TAGAP (ENSBGRG00000026597) #16	FNDC1 (ENSBGRG00000026585) #18	ENSBGRG00000026571	ENSBGRG00000026563 ##20	ENSBGRG00000026557 #20	ENSBGRG00000026550 #22	TCP1 (ENSBGRG00000026527) #21	MRPL18 (ENSBGRG00000026525) #23	PNLDC1 (ENSBGRG00000026494) #24	MAS1 (ENSBGRG00000026489) #25	ENSBGRG00000026486	IGF2R (ENSBGRG00000021970) #26	SLC22A1 (ENSBGRG00000021387) #27	SLC22A2 (ENSBGRG00000021163) #28	SLC22A3 (ENSBGRG00000020975) #29	ENSBGRG00000020646 #30	ENSBGRG00000020575	MAP3K4 (ENSBGRG00000017036) #31	AGPAT4 (ENSBGRG00000016794) #33	ENSBGRG00000016774	PRKN (ENSBGRG00000015642) #35
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	179	ENSMMSG00000007955	CCN3 (ENSMMSG00000007984)	FABP12 (ENSMMSG00000008001)	FABP4 (ENSMMSG00000008031)	FABP9 (ENSMMSG00000008067)	ENSMMSG00000008129	PAG1 (ENSMMSG00000008150)	ZNF704 (ENSMMSG00000008169)	ZBTB10 (ENSMMSG00000008194)	TPD52 (ENSMMSG00000008296)	MRPS28 (ENSMMSG00000009043)	HEY1 (ENSMMSG00000009080)	STMN2 (ENSMMSG00000009102)	IL7 (ENSMMSG00000009163)	PKIA (ENSMMSG00000009271)	ENSMMSG00000009310 #22	ENSMMSG00000009363	PEX2 (ENSMMSG00000009421)	ZFHX4 (ENSMMSG00000009465)	ENSMMSG00000009642	HNF4G (ENSMMSG00000009664)	ENSMMSG00000009721	ENSMMSG00000009729	CRISPLD1 (ENSMMSG00000009747)	PI15 (ENSMMSG00000009843)	GDAP1 (ENSMMSG00000009866)	JPH1 (ENSMMSG00000009896)	ENSMMSG00000009924	ENSMMSG00000009942	LY96 (ENSMMSG00000009965)	TMEM70 (ENSMMSG00000010023)
Siberian musk deer	MODERN SPECIES	61	SNX9 (ENSMMSG00000001061)	SYNJ2 (ENSMMSG00000001120)	SERAC1 (ENSMMSG00000001280)	GTF2H5 (ENSMMSG00000001513) #7	TULP4 (ENSMMSG00000001543) #9	TMEM181 (ENSMMSG00000001689) #11	ENSMMSG00000001893 #12	SYTL3 (ENSMMSG00000001907) #13	EZR (ENSMMSG00000001963) #14	RSPH3 (ENSMMSG00000002005) #15	TAGAP (ENSMMSG00000002040) #16	ENSMMSG00000002090	FNDC1 (ENSMMSG00000002110) #18	ENSMMSG00000002137	WTAP (ENSMMSG00000002177) #20	ENSMMSG00000002220 #22	TCP1 (ENSMMSG00000002241) #21	MRPL18 (ENSMMSG00000002291) #23	PNLDC1 (ENSMMSG00000002313) #24	MAS1 (ENSMMSG00000002388) #25	IGF2R (ENSMMSG00000002420) #26	SLC22A1 (ENSMMSG00000002522) #27	SLC22A2 (ENSMMSG00000002601) #28	SLC22A3 (ENSMMSG00000002642) #29	ENSMMSG00000002676 #30	ENSMMSG00000002739	MAP3K4 (ENSMMSG00000002913) #31	AGPAT4 (ENSMMSG00000003318) #33	PRKN (ENSMMSG00000003365) #35	ENSMMSG00000003500	PACRG (ENSMMSG00000003517) #37
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Equus	ANCESTRAL SPECIES	46	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.a.b ##20	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Donkey	MODERN SPECIES	20	SNX9 (ENSEASG00005018899)	SYNJ2 (ENSEASG00005018902)	SERAC1 (ENSEASG00005018908)	ENSEASG00005032334 #7	TULP4 (ENSEASG00005018912) #9	TMEM181 (ENSEASG00005018921) #11	DYNLT1 (ENSEASG00005018942) #12	SYTL3 (ENSEASG00005018960) #13	EZR (ENSEASG00005018988) #14	RSPH3 (ENSEASG00005018991) #15	TAGAP (ENSEASG00005018994) #16	FNDC1 (ENSEASG00005019003) #18	ENSEASG00005019012	ENSEASG00005023660 ##20	WTAP (ENSEASG00005024385) #20	ACAT2 (ENSEASG00005019019) #22	TCP1 (ENSEASG00005019021) #21	ENSEASG00005028667 #23	PNLDC1 (ENSEASG00005019029) #24	MAS1 (ENSEASG00005019033) #25	IGF2R (ENSEASG00005019232) #26	SLC22A1 (ENSEASG00005019667) #27	SLC22A2 (ENSEASG00005019670) #28	SLC22A3 (ENSEASG00005019679) #29	ENSEASG00005019697 #30	MAP3K4 (ENSEASG00005019701) #31	ENSEASG00005019709	ENSEASG00005019711 #33	PRKN (ENSEASG00005019721) #35	PACRG (ENSEASG00005019723) #37	QKI (ENSEASG00005019724)
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Megabat	MODERN SPECIES	4031														SOD2 (ENSPVAG00000005302)	WTAP (ENSPVAG00000005310) #20	ACAT2 (ENSPVAG00000005312) #22	TCP1 (ENSPVAG00000005316) #21	MRPL18 (ENSPVAG00000005322) #23	PNLDC1 (ENSPVAG00000005325) #24	MAS1 (ENSPVAG00000005330) #25	IGF2R (ENSPVAG00000005331) #26	SLC22A1 (ENSPVAG00000005337) #27
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Greater horseshoe bat	MODERN SPECIES	21	SYNJ2 (ENSRFEG00010020202)	SERAC1 (ENSRFEG00010020518)	GTF2H5 (ENSRFEG00010005282) #7	TULP4 (ENSRFEG00010005329) #9	TMEM181 (ENSRFEG00010005412) #11	ENSRFEG00010005488	ENSRFEG00010005510 #12	ENSRFEG00010005541 #13	ENSRFEG00010005565 #13	EZR (ENSRFEG00010005668) #14	RSPH3 (ENSRFEG00010005806) #15	TAGAP (ENSRFEG00010005835) #16	FNDC1 (ENSRFEG00010005884) #18	SOD2 (ENSRFEG00010005963)	ENSRFEG00010006054 #20	ACAT2 (ENSRFEG00010006101) #22	ENSRFEG00010006182 #21	MRPL18 (ENSRFEG00010006349) #23	PNLDC1 (ENSRFEG00010006385) #24	MAS1 (ENSRFEG00010006507) #25	IGF2R (ENSRFEG00010006536) #26	SLC22A1 (ENSRFEG00010006710) #27	SLC22A2 (ENSRFEG00010006879) #28	ENSRFEG00010007005	SLC22A3 (ENSRFEG00010007045) #29	ENSRFEG00010007176 #30	MAP3K4 (ENSRFEG00010007347) #31	AGPAT4 (ENSRFEG00010008317) #33	PRKN (ENSRFEG00010008431) #35	PACRG (ENSRFEG00010008690) #37	QKI (ENSRFEG00010008753)
Microbat	MODERN SPECIES	1439										ENSMLUG00000001931 #14	RSPH3 (ENSMLUG00000012768) #15	TAGAP (ENSMLUG00000012777) #16	FNDC1 (ENSMLUG00000029080) #18	SOD2 (ENSMLUG00000012242)	WTAP (ENSMLUG00000000721) #20	ACAT2 (ENSMLUG00000000725) #22	TCP1 (ENSMLUG00000000732) #21	MRPL18 (ENSMLUG00000000743) #23	PNLDC1 (ENSMLUG00000000747) #24
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.n #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993.n #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
lion	MODERN SPECIES	5	SYNJ2 (ENSPLOG00000002967)	ENSPLOG00000003092	SERAC1 (ENSPLOG00000003108)	GTF2H5 (ENSPLOG00000003144) #7	TULP4 (ENSPLOG00000003250) #9	ENSPLOG00000003310	TMEM181 (ENSPLOG00000003343) #11	DYNLT1 (ENSPLOG00000003373) #12	SYTL3 (ENSPLOG00000003399) #13	EZR (ENSPLOG00000003444) #14	RSPH3 (ENSPLOG00000003506) #15	TAGAP (ENSPLOG00000003565) #16	FNDC1 (ENSPLOG00000003601) #18	SOD2 (ENSPLOG00000003669)	WTAP (ENSPLOG00000003697) #20	ACAT2 (ENSPLOG00000003718) #22	TCP1 (ENSPLOG00000003746) #21	MRPL18 (ENSPLOG00000003790) #23	PNLDC1 (ENSPLOG00000003816) #24	MAS1 (ENSPLOG00000003857) #25	IGF2R (ENSPLOG00000003880) #26	SLC22A1 (ENSPLOG00000004002) #27	SLC22A2 (ENSPLOG00000004027) #28	SLC22A3 (ENSPLOG00000004048) #29	ENSPLOG00000004061 #30	ENSPLOG00000004079 #30	ENSPLOG00000004087 #30	MAP3K4 (ENSPLOG00000004139) #31	AGPAT4 (ENSPLOG00000004245) #33	PRKN (ENSPLOG00000004285) #35	PACRG (ENSPLOG00000004324) #37
leopard	MODERN SPECIES	59	ZDHHC14 (ENSPPRG00000009654)	SNX9 (ENSPPRG00000009191)	SYNJ2 (ENSPPRG00000009068)	ENSPPRG00000016782	SERAC1 (ENSPPRG00000007784)	GTF2H5 (ENSPPRG00000007199) #7	TULP4 (ENSPPRG00000006978) #9	TMEM181 (ENSPPRG00000006100) #11	DYNLT1 (ENSPPRG00000005411) #12	SYTL3 (ENSPPRG00000004402) #13	EZR (ENSPPRG00000002344) #14	RSPH3 (ENSPPRG00000001447) #15	ENSPPRG00000000588 #16	SOD2 (ENSPPRG00000019418)	WTAP (ENSPPRG00000016764) #20	ACAT2 (ENSPPRG00000014607) #22	TCP1 (ENSPPRG00000014032) #21	MRPL18 (ENSPPRG00000013063) #23	PNLDC1 (ENSPPRG00000012854) #24	MAS1 (ENSPPRG00000016120) #25	IGF2R (ENSPPRG00000010975) #26	SLC22A1 (ENSPPRG00000009083) #27	SLC22A2 (ENSPPRG00000008200) #28	SLC22A3 (ENSPPRG00000007817) #29	ENSPPRG00000007637 #30	MAP3K4 (ENSPPRG00000007372) #31	AGPAT4 (ENSPPRG00000003125) #33	PRKN (ENSPPRG00000002801) #35	PACRG (ENSPPRG00000018305) #37	QKI (ENSPPRG00000013383)	C6orf118 (ENSPPRG00000012423)
Tiger	MODERN SPECIES	551	ZDHHC14 (ENSPTIG00000014488)	SNX9 (ENSPTIG00000016966)	SYNJ2 (ENSPTIG00000018780)	ENSPTIG00000005689	GTF2H5 (ENSPTIG00000006736) #7	TULP4 (ENSPTIG00000007104) #9	TMEM181 (ENSPTIG00000011656) #11	DYNLT1 (ENSPTIG00000015848) #12	SYTL3 (ENSPTIG00000016444) #13	EZR (ENSPTIG00000003011) #14	RSPH3 (ENSPTIG00000010790) #15	ENSPTIG00000013679 #16	ENSPTIG00000014899 #16	SOD2 (ENSPTIG00000018855)	WTAP (ENSPTIG00000004824) #20	ACAT2 (ENSPTIG00000006762) #22	TCP1 (ENSPTIG00000007384) #21	MRPL18 (ENSPTIG00000010107) #23	PNLDC1 (ENSPTIG00000011501) #24	MAS1 (ENSPTIG00000001177) #25	ENSPTIG00000014351	IGF2R (ENSPTIG00000015202) #26	SLC22A1 (ENSPTIG00000019426) #27	SLC22A2 (ENSPTIG00000006985) #28	SLC22A3 (ENSPTIG00000008644) #29	ENSPTIG00000010411 #30	MAP3K4 (ENSPTIG00000017590) #31	AGPAT4 (ENSPTIG00000021603) #33	PRKN (ENSPTIG00000021925) #35	PACRG (ENSPTIG00000004368) #37	ENSPTIG00000007481
Cat	MODERN SPECIES	236	ZDHHC14 (ENSFCAG00000006280)	SNX9 (ENSFCAG00000010853)	SYNJ2 (ENSFCAG00000010854)	SERAC1 (ENSFCAG00000010855)	GTF2H5 (ENSFCAG00000034208) #7	TULP4 (ENSFCAG00000007987) #9	TMEM181 (ENSFCAG00000007988) #11	DYNLT1 (ENSFCAG00000007990) #12	SYTL3 (ENSFCAG00000007991) #13	EZR (ENSFCAG00000007992) #14	RSPH3 (ENSFCAG00000028166) #15	TAGAP (ENSFCAG00000014702) #16	FNDC1 (ENSFCAG00000022317) #18	SOD2 (ENSFCAG00000002843)	WTAP (ENSFCAG00000002844) #20	ACAT2 (ENSFCAG00000002845) #22	TCP1 (ENSFCAG00000002846) #21	MRPL18 (ENSFCAG00000002847) #23	PNLDC1 (ENSFCAG00000002848) #24	MAS1 (ENSFCAG00000002849) #25	IGF2R (ENSFCAG00000002850) #26	SLC22A1 (ENSFCAG00000002851) #27	SLC22A2 (ENSFCAG00000002852) #28	SLC22A3 (ENSFCAG00000000355) #29	PLG (ENSFCAG00000023975) #30	MAP3K4 (ENSFCAG00000000356) #31	ENSFCAG00000038094	AGPAT4 (ENSFCAG00000000357) #33	PRKN (ENSFCAG00000038081) #35	ENSFCAG00000034013	PACRG (ENSFCAG00000028010) #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Canidae	ANCESTRAL SPECIES	34	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT01030000234985	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000153524.b.a.a	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Dingo	MODERN SPECIES	125	SNX9 (ENSCAFG00020015786)	SYNJ2 (ENSCAFG00020015809)	SERAC1 (ENSCAFG00020016376)	TULP4 (ENSCAFG00020017632) #9	ENSCAFG00020017637	TMEM181 (ENSCAFG00020017638) #11	ENSCAFG00020017657 #12	SYTL3 (ENSCAFG00020017661) #13	EZR (ENSCAFG00020017702) #14	RSPH3 (ENSCAFG00020017704) #15	ENSCAFG00020017705	TAGAP (ENSCAFG00020017706) #16	FNDC1 (ENSCAFG00020017707) #18	SOD2 (ENSCAFG00020017714)	WTAP (ENSCAFG00020017718) #20	ACAT2 (ENSCAFG00020017725) #22	TCP1 (ENSCAFG00020017729) #21	MRPL18 (ENSCAFG00020017736) #23	PNLDC1 (ENSCAFG00020017742) #24	MAS1 (ENSCAFG00020017759) #25	IGF2R (ENSCAFG00020017822) #26	ENSCAFG00020018698 #27	SLC22A2 (ENSCAFG00020018701) #28	ENSCAFG00020018703	SLC22A3 (ENSCAFG00020018716) #29	ENSCAFG00020018797 #30	MAP3K4 (ENSCAFG00020018821) #31	AGPAT4 (ENSCAFG00020018873) #33	ENSCAFG00020018877 #35	ENSCAFG00020018908 #35	ENSCAFG00020018975 #35
Dog	MODERN SPECIES		SNX9 (ENSCAFG00845000878)	SYNJ2 (ENSCAFG00845000995)	SERAC1 (ENSCAFG00845001134)	GTF2H5 (ENSCAFG00845001194) #7	TULP4 (ENSCAFG00845001243) #9	TMEM181 (ENSCAFG00845001296) #11	DYNLT1 (ENSCAFG00845001317) #12	SYTL3 (ENSCAFG00845001348) #13	EZR (ENSCAFG00845001373) #14	RSPH3 (ENSCAFG00845001431) #15	ENSCAFG00845001443	TAGAP (ENSCAFG00845001461) #16	FNDC1 (ENSCAFG00845001542) #18	SOD2 (ENSCAFG00845001754)	WTAP (ENSCAFG00845001806) #20	ACAT2 (ENSCAFG00845001848) #22	TCP1 (ENSCAFG00845001904) #21	MRPL18 (ENSCAFG00845001976) #23	PNLDC1 (ENSCAFG00845001998) #24	MAS1 (ENSCAFG00845002042) #25	IGF2R (ENSCAFG00845002089) #26	SLC22A1 (ENSCAFG00845002132) #27	SLC22A2 (ENSCAFG00845002163) #28	SLC22A3 (ENSCAFG00845002183) #29	PLG (ENSCAFG00845002222) #30	MAP3K4 (ENSCAFG00845002271) #31	AGPAT4 (ENSCAFG00845002356) #33	PRKN (ENSCAFG00845002459) #35	PACRG (ENSCAFG00845002583) #37	QKI (ENSCAFG00845002617)	ENSCAFG00845004368
Red fox	MODERN SPECIES	157	ENSVVUG00000007425	SYNJ2 (ENSVVUG00000007407)	SERAC1 (ENSVVUG00000007380)	TULP4 (ENSVVUG00000007373) #9	TMEM181 (ENSVVUG00000006803) #11	DYNLT1 (ENSVVUG00000006778) #12	SYTL3 (ENSVVUG00000006766) #13	EZR (ENSVVUG00000006757) #14	RSPH3 (ENSVVUG00000006742) #15	ENSVVUG00000006737	TAGAP (ENSVVUG00000006731) #16	FNDC1 (ENSVVUG00000006697) #18	ENSVVUG00000006676	WTAP (ENSVVUG00000006645) #20	ENSVVUG00000006644	ACAT2 (ENSVVUG00000006634) #22	TCP1 (ENSVVUG00000006612) #21	MRPL18 (ENSVVUG00000006607) #23	PNLDC1 (ENSVVUG00000006586) #24	MAS1 (ENSVVUG00000006583) #25	IGF2R (ENSVVUG00000002250) #26	SLC22A1 (ENSVVUG00000001730) #27	SLC22A2 (ENSVVUG00000001717) #28
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35
American mink	MODERN SPECIES	4	ZDHHC14 (ENSNVIG00000009059)	SNX9 (ENSNVIG00000009085)	SYNJ2 (ENSNVIG00000009140)	SERAC1 (ENSNVIG00000009167)	TF2H5 (ENSNVIG00000009285) #7	TULP4 (ENSNVIG00000009306) #9	TMEM181 (ENSNVIG00000009381) #11	DYNLT1 (ENSNVIG00000009650) #12	SYTL3 (ENSNVIG00000009680) #13	EZR (ENSNVIG00000009830) #14	TAGAP (ENSNVIG00000009891) #16	FNDC1 (ENSNVIG00000009936) #18	ENSNVIG00000010133	SODM (ENSNVIG00000010142)	WTAP (ENSNVIG00000010202) #20	ACAT2 (ENSNVIG00000010262) #22	TCP1 (ENSNVIG00000010276) #21	RM18 (ENSNVIG00000010351) #23	PNLDC1 (ENSNVIG00000010375) #24	MAS1 (ENSNVIG00000010425) #25	IGF2R (ENSNVIG00000010447) #26	SLC22A1 (ENSNVIG00000010572) #27	SLC22A2 (ENSNVIG00000010662) #28	SLC22A3 (ENSNVIG00000010693) #29	ENSNVIG00000010704 #30	MAP3K4 (ENSNVIG00000010747) #31	ENSNVIG00000010894	AGPAT4 (ENSNVIG00000010903) #33	ENSNVIG00000010918 #35
Ferret	MODERN SPECIES	321	ZDHHC14 (ENSMPUG00000005351)	SNX9 (ENSMPUG00000005333)	SYNJ2 (ENSMPUG00000005323)	SERAC1 (ENSMPUG00000005304)	GTF2H5 (ENSMPUG00000005299) #7	TULP4 (ENSMPUG00000005290) #9	TMEM181 (ENSMPUG00000005207) #11	DYNLT1 (ENSMPUG00000005205) #12	SYTL3 (ENSMPUG00000005195) #13	EZR (ENSMPUG00000005183) #14	RSPH3 (ENSMPUG00000005176) #15	TAGAP (ENSMPUG00000005167) #16	FNDC1 (ENSMPUG00000005104) #18	SOD2 (ENSMPUG00000005045)	WTAP (ENSMPUG00000005036) #20	ACAT2 (ENSMPUG00000005030) #22	TCP1 (ENSMPUG00000005020) #21	MRPL18 (ENSMPUG00000005009) #23	PNLDC1 (ENSMPUG00000004920) #24	MAS1 (ENSMPUG00000019617) #25	ENSMPUG00000019615	IGF2R (ENSMPUG00000004888) #26	SLC22A1 (ENSMPUG00000004685) #27	SLC22A2 (ENSMPUG00000004670) #28	SLC22A3 (ENSMPUG00000004654) #29	ENSMPUG00000004632 #30	MAP3K4 (ENSMPUG00000004612) #31	AGPAT4 (ENSMPUG00000004604) #33	ENSMPUG00000004601 #35	ENSMPUG00000004595	ENSMPUG00000004593 #35
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00950000186188	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Giant Panda	MODERN SPECIES	1	SNX9 (ENSAMEG00000009626)	SYNJ2 (ENSAMEG00000009581)	SERAC1 (ENSAMEG00000009567)	GTF2H5 (ENSAMEG00000028196) #7	TULP4 (ENSAMEG00000009544) #9	ENSAMEG00000025985	TMEM181 (ENSAMEG00000009492) #11	DYNLT1 (ENSAMEG00000009483) #12	SYTL3 (ENSAMEG00000009448) #13	EZR (ENSAMEG00000009395) #14	RSPH3 (ENSAMEG00000009373) #15	TAGAP (ENSAMEG00000009357) #16	FNDC1 (ENSAMEG00000003564) #18	ENSAMEG00000015466	WTAP (ENSAMEG00000025264) #20	ACAT2 (ENSAMEG00000015430) #22	TCP1 (ENSAMEG00000015405) #21	MRPL18 (ENSAMEG00000015398) #23	PNLDC1 (ENSAMEG00000015371) #24	MAS1 (ENSAMEG00000019584) #25	IGF2R (ENSAMEG00000015172) #26	SLC22A1 (ENSAMEG00000015110) #27	SLC22A2 (ENSAMEG00000015045) #28	SLC22A3 (ENSAMEG00000015037) #29	ENSAMEG00000015960 #30	MAP3K4 (ENSAMEG00000015908) #31	ENSAMEG00000015885 #33	PRKN (ENSAMEG00000015876) #35	PACRG (ENSAMEG00000008449) #37	QKI (ENSAMEG00000008459)	ENSAMEG00000027289
Ursus	ANCESTRAL SPECIES	81	ENSGT00940000179662	ENSGT00940000160715.e	ENSGT00390000003560	ENSGT00390000004028 #7	ENSGT00940000155913 #9	ENSGT00950000186188	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #13	ENSGT01090000260082.d.b #14	ENSGT00390000004172 #15	ENSGT00940000157993 #16	ENSGT00530000063558.B #18	ENSGT00390000011877	ENSGT00390000013931.a.b.b #20	ENSGT01030000234626.B #22	ENSGT00550000074878 #21	ENSGT00390000006394 #23	ENSGT00940000153167.A.a #24	ENSGT01030000234639.A.a #25	ENSGT00390000013943 #26	ENSGT00940000162065 #27	ENSGT00940000155089 #28	ENSGT00940000160810 #29	ENSGT00940000155208 #30	ENSGT00880000138034 #31	ENSGT00950000182836.b.b.b.b #33	ENSGT00390000011034 #35	ENSGT00970000197976	ENSGT00940000157330 #37	ENSGT00940000155310.b
American black bear	MODERN SPECIES	5145																ENSUAMG00000015931 #22	TCP1 (ENSUAMG00000015793) #21	MRPL18 (ENSUAMG00000015786) #23	PNLDC1 (ENSUAMG00000015783) #24	MAS1 (ENSUAMG00000015780) #25
Polar bear	MODERN SPECIES	150	SYNJ2 (ENSUMAG00000012826)	SERAC1 (ENSUMAG00000012320)	GTF2H5 (ENSUMAG00000012271) #7	TULP4 (ENSUMAG00000012196) #9	ENSUMAG00000012177	TMEM181 (ENSUMAG00000012155) #11	DYNLT1 (ENSUMAG00000012151) #12	SYTL3 (ENSUMAG00000012070) #13	EZR (ENSUMAG00000012047) #14	RSPH3 (ENSUMAG00000012040) #15	TAGAP (ENSUMAG00000012036) #16	FNDC1 (ENSUMAG00000011974) #18	SOD2 (ENSUMAG00000011961)	WTAP (ENSUMAG00000011957) #20	ENSUMAG00000011954	ACAT2 (ENSUMAG00000011942) #22	TCP1 (ENSUMAG00000011924) #21	MRPL18 (ENSUMAG00000011916) #23	PNLDC1 (ENSUMAG00000011903) #24	MAS1 (ENSUMAG00000011898) #25	IGF2R (ENSUMAG00000011876) #26	SLC22A1 (ENSUMAG00000011827) #27	SLC22A2 (ENSUMAG00000011818) #28	SLC22A3 (ENSUMAG00000011813) #29	ENSUMAG00000011793 #30	MAP3K4 (ENSUMAG00000011760) #31	AGPAT4 (ENSUMAG00000011739) #33	ENSUMAG00000011729 #35	ENSUMAG00000011710	ENSUMAG00000011702 #35	ENSUMAG00000011694
Eulipotyphla	ANCESTRAL SPECIES	2107																ENSGT01030000234626.B #22	ENSGT00550000074878 #21
Common shrew	MODERN SPECIES	1517																ACAT2 (ENSSARG00000002451) #22	TCP1 (ENSSARG00000002463) #21
Hedgehog	MODERN SPECIES	2118																ACAT2 (ENSEEUG00000002076) #22	TCP1 (ENSEEUG00000002140) #21