Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Eurasian red squirrel	MODERN SPECIES	16	SERAC1 (ENSSVLG00005017957) #7	ENSSVLG00005017883 #8	GTF2H5 (ENSSVLG00005017847) #9	TULP4 (ENSSVLG00005017496) #10	TMEM181 (ENSSVLG00005017253) #11	DYNLT1 (ENSSVLG00005017209) #12	ENSSVLG00005017151 #13	SYTL3 (ENSSVLG00005016826) #14	EZR (ENSSVLG00005016672) #15	RSPH3 (ENSSVLG00005016457) #16	TAGAP (ENSSVLG00005016286) #17	FNDC1 (ENSSVLG00005015913) #18	ENSSVLG00005015820 #19	ENSSVLG00005015666 #20	ENSSVLG00005015534 #21	ACAT2 (ENSSVLG00005015487) #22	ENSSVLG00005015119 #23	ENSSVLG00005015024 #24	MRPL18 (ENSSVLG00005014946) #25	ENSSVLG00005014568 #26	MAS1 (ENSSVLG00005014545) #27	ENSSVLG00005014490 #28	IGF2R (ENSSVLG00005013999) #29	SLC22A1 (ENSSVLG00005013724) #30	SLC22A2 (ENSSVLG00005013453) #31	SLC22A3 (ENSSVLG00005013302) #32	ENSSVLG00005013240 #33	ENSSVLG00005013165 #34	ENSSVLG00005013042 #35	MAP3K4 (ENSSVLG00005011972) #36	AGPAT4 (ENSSVLG00005011803) #37
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531.`b #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000015545.v	ENSGT00390000011034	ENSGT00940000157330
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531.`b #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000015545.v	ENSGT00390000011034	ENSGT00940000157330
Squirrel	MODERN SPECIES	89	SNX9 (ENSSTOG00000010620)	SYNJ2 (ENSSTOG00000016474)	SERAC1 (ENSSTOG00000016478) #7	GTF2H5 (ENSSTOG00000003476) #9	TULP4 (ENSSTOG00000006169) #10	TMEM181 (ENSSTOG00000006218) #11	ENSSTOG00000006273 #12	SYTL3 (ENSSTOG00000006284) #14	EZR (ENSSTOG00000006325) #15	RSPH3 (ENSSTOG00000021240) #16	TAGAP (ENSSTOG00000021563) #17	FNDC1 (ENSSTOG00000007105) #18	ENSSTOG00000033536	SOD2 (ENSSTOG00000008738) #20	WTAP (ENSSTOG00000026157) #21	ACAT2 (ENSSTOG00000005564) #22	ENSSTOG00000005572 #23	MRPL18 (ENSSTOG00000005583) #25	PNLDC1 (ENSSTOG00000005595) #26	ENSSTOG00000026373 #27	MAS1 (ENSSTOG00000029761) #27	IGF2R (ENSSTOG00000008960) #29	SLC22A1 (ENSSTOG00000009024) #30	SLC22A2 (ENSSTOG00000010147) #31	SLC22A3 (ENSSTOG00000007036) #32	ENSSTOG00000020315 #33	MAP3K4 (ENSSTOG00000002821) #36	AGPAT4 (ENSSTOG00000002544) #37	PRKN (ENSSTOG00000021965)	ENSSTOG00000034364	PACRG (ENSSTOG00000010375)
Alpin marmot	MODERN SPECIES	55	SNX9 (ENSMMMG00000012106)	SYNJ2 (ENSMMMG00000010186)	SERAC1 (ENSMMMG00000010093) #7	GTF2H5 (ENSMMMG00000010071) #9	ENSMMMG00000010057	TULP4 (ENSMMMG00000010029) #10	TMEM181 (ENSMMMG00000009973) #11	ENSMMMG00000009958 #12	SYTL3 (ENSMMMG00000009912) #14	EZR (ENSMMMG00000009906) #15	RSPH3 (ENSMMMG00000009878) #16	TAGAP (ENSMMMG00000009875) #17	ENSMMMG00000009777	SOD2 (ENSMMMG00000009744) #20	WTAP (ENSMMMG00000009724) #21	ACAT2 (ENSMMMG00000009712) #22	TCP1 (ENSMMMG00000009649) #23	MRPL18 (ENSMMMG00000009635) #25	PNLDC1 (ENSMMMG00000009617) #26	ENSMMMG00000009610 #27	MAS1 (ENSMMMG00000009593) #27	IGF2R (ENSMMMG00000009520) #29	SLC22A1 (ENSMMMG00000009498) #30	SLC22A2 (ENSMMMG00000009474) #31	SLC22A3 (ENSMMMG00000009457) #32	ENSMMMG00000009428 #33	MAP3K4 (ENSMMMG00000009318) #36	AGPAT4 (ENSMMMG00000009306) #37	ENSMMMG00000009285	PRKN (ENSMMMG00000009240)	PACRG (ENSMMMG00000009213)
Hystricomorpha	ANCESTRAL SPECIES	53														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Naked mole-rat female	MODERN SPECIES		IL17A (ENSHGLG00000014659)	IL17F (ENSHGLG00000017633)	MCM3 (ENSHGLG00000016531)	PAQR8 (ENSHGLG00000010601)	EFHC1 (ENSHGLG00000009785)	ENSHGLG00000009261	ENSHGLG00000047464	ENSHGLG00000035426	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000043320	ENSHGLG00000007131	ENSHGLG00000048454	ENSHGLG00000016518 #20	WTAP (ENSHGLG00000007879) #21	ENSHGLG00000033037	ACAT2 (ENSHGLG00000006902) #22	ENSHGLG00000034564 #23	ENSHGLG00000004341	ENSHGLG00000003723	TCP1 (ENSHGLG00000007866) #23	ENSHGLG00000007214 #25	PNLDC1 (ENSHGLG00000006889) #26	ENSHGLG00000035250	MAS1 (ENSHGLG00000019988) #27	ENSHGLG00000039226	Igf2r (ENSHGLG00000003728) #29	SLC22A1 (ENSHGLG00000017500) #30	ENSHGLG00000014427	ENSHGLG00000017482 #31	ENSHGLG00000034005	ENSHGLG00000050994
Hystricomorpha_a	ANCESTRAL SPECIES	30														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Guinea pig	MODERN SPECIES	60													ENSCPOG00000040324	SOD2 (ENSCPOG00000036439) #20	WTAP (ENSCPOG00000001669) #21	ACAT2 (ENSCPOG00000001672) #22	TCP1 (ENSCPOG00000001676) #23	MRPL18 (ENSCPOG00000040103) #25	PNLDC1 (ENSCPOG00000019565) #26	MAS1 (ENSCPOG00000000027) #27	IGF2R (ENSCPOG00000013207) #29	SLC22A2 (ENSCPOG00000001527) #31	SLC22A3 (ENSCPOG00000010127) #32	ENSCPOG00000011605 #33	MAP3K4 (ENSCPOG00000013392) #36	AGPAT4 (ENSCPOG00000006135) #37	PRKN (ENSCPOG00000006136)	PACRG (ENSCPOG00000013410)	QKI (ENSCPOG00000003424)	C6orf118 (ENSCPOG00000008774)	PDE10A (ENSCPOG00000008783)
Hystricomorpha_b	ANCESTRAL SPECIES	29														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Long-tailed chinchilla	MODERN SPECIES	146														SOD2 (ENSCLAG00000010198) #20	WTAP (ENSCLAG00000009722) #21	ACAT2 (ENSCLAG00000009441) #22	ENSCLAG00000009354 #23	ENSCLAG00000012133	MRPL18 (ENSCLAG00000012045) #25	PNLDC1 (ENSCLAG00000003228) #26	MAS1 (ENSCLAG00000017515) #27	IGF2R (ENSCLAG00000002642) #29	SLC22A1 (ENSCLAG00000002646) #30	SLC22A2 (ENSCLAG00000002562) #31	SLC22A3 (ENSCLAG00000002492) #32	ENSCLAG00000002399 #33	MAP3K4 (ENSCLAG00000008769) #36	AGPAT4 (ENSCLAG00000008421) #37	PRKN (ENSCLAG00000008284)	PACRG (ENSCLAG00000008105)	ENSCLAG00000006238
Degu	MODERN SPECIES	153	FOXK2 (ENSODEG00000008321)	WDR45B (ENSODEG00000007809)	RAB40B (ENSODEG00000007441)	ENSODEG00000020021	FN3KRP (ENSODEG00000012467)	ENSODEG00000009328	ENSODEG00000019653	ZNF750 (ENSODEG00000008866)	TBCD (ENSODEG00000009094)	B3GNTL1 (ENSODEG00000011917)	METRNL (ENSODEG00000008002)	ENSODEG00000019438	SOD2 (ENSODEG00000007052) #20	ENSODEG00000019351	ENSODEG00000008023 ##21	ACAT2 (ENSODEG00000008431) #22	ENSODEG00000008372 #23	ENSODEG00000007990 #23	ENSODEG00000007318 #25	ENSODEG00000019385	PNLDC1 (ENSODEG00000008047) #26	ENSODEG00000019381	MAS1 (ENSODEG00000019418) #27	ENSODEG00000019599	IGF2R (ENSODEG00000007106) #29	ENSODEG00000019312	SLC22A1 (ENSODEG00000007862) #30	SLC22A2 (ENSODEG00000007315) #31	ENSODEG00000007010	ENSODEG00000006583	SLC22A3 (ENSODEG00000006460) #32
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #36	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #36	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Snx9 (ENSCGRG00001001484)	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521) #7	ENSCGRG00001013373 #9	Tulp4 (ENSCGRG00001020408) #10	Tmem181a (ENSCGRG00001020931) #11	ENSCGRG00001024351 #12	Sytl3 (ENSCGRG00001021896) #14	Ezr (ENSCGRG00001022444) #15	ENSCGRG00001023672 #16	ENSCGRG00001002978 #17	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #23	Mrpl18 (ENSCGRG00001010667) #25	ENSCGRG00001007470 #26	Mas1 (ENSCGRG00001007652) #27	Igf2r (ENSCGRG00001022921) #29	Slc22a1 (ENSCGRG00001023484) #30	Slc22a2 (ENSCGRG00001023859) #31	Slc22a3 (ENSCGRG00001024404) #32	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #33	Map3k4 (ENSCGRG00001023770) #36	Agpat4 (ENSCGRG00001024340) #37	Prkn (ENSCGRG00001011980)	ENSCGRG00001009195
Chinese hamster chok1gshd	MODERN SPECIES	1	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521) #7	ENSCGRG00001013373 #9	Tulp4 (ENSCGRG00001020408) #10	Tmem181a (ENSCGRG00001020931) #11	ENSCGRG00001024351 #12	Sytl3 (ENSCGRG00001021896) #14	Ezr (ENSCGRG00001022444) #15	ENSCGRG00001023672 #16	ENSCGRG00001002978 #17	Fndc1 (ENSCGRG00001004306) #18	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #23	Mrpl18 (ENSCGRG00001010667) #25	ENSCGRG00001007470 #26	Mas1 (ENSCGRG00001007652) #27	Igf2r (ENSCGRG00001022921) #29	Slc22a1 (ENSCGRG00001023484) #30	Slc22a2 (ENSCGRG00001023859) #31	Slc22a3 (ENSCGRG00001024404) #32	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #33	Map3k4 (ENSCGRG00001023770) #36	Agpat4 (ENSCGRG00001024340) #37	Prkn (ENSCGRG00001011980)	ENSCGRG00001009195	Pacrg (ENSCGRG00001010865)
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	358	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727) #7	Gtf2h5 (ENSMOCG00000000992) #9	Tulp4 (ENSMOCG00000020984) #10	ENSMOCG00000013123 #11	ENSMOCG00000011752 #12	Sytl3 (ENSMOCG00000014797) #14	Ezr (ENSMOCG00000016414) #15	ENSMOCG00000018649 #16	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #23	Mrpl18 (ENSMOCG00000016680) #25	Pnldc1 (ENSMOCG00000014287) #26	Mas1 (ENSMOCG00000012154) #27	Igf2r (ENSMOCG00000016653) #29	Slc22a1 (ENSMOCG00000006138) #30	Slc22a2 (ENSMOCG00000000432) #31	Slc22a3 (ENSMOCG00000009699) #32	Plg (ENSMOCG00000021058) #33	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #36	Agpat4 (ENSMOCG00000002544) #37	Prkn (ENSMOCG00000000910)	Pacrg (ENSMOCG00000018703)	Qki (ENSMOCG00000008370)
Prairie vole	MODERN SPECIES	358	Tmem242 (ENSMOCG00000011673)	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727) #7	Gtf2h5 (ENSMOCG00000000992) #9	Tulp4 (ENSMOCG00000020984) #10	ENSMOCG00000013123 #11	ENSMOCG00000011752 #12	Sytl3 (ENSMOCG00000014797) #14	Ezr (ENSMOCG00000016414) #15	ENSMOCG00000018649 #16	Fndc1 (ENSMOCG00000009408) #18	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #23	Mrpl18 (ENSMOCG00000016680) #25	Pnldc1 (ENSMOCG00000014287) #26	Mas1 (ENSMOCG00000012154) #27	Igf2r (ENSMOCG00000016653) #29	Slc22a1 (ENSMOCG00000006138) #30	Slc22a2 (ENSMOCG00000000432) #31	Slc22a3 (ENSMOCG00000009699) #32	Plg (ENSMOCG00000021058) #33	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #36	Agpat4 (ENSMOCG00000002544) #37	Prkn (ENSMOCG00000000910)	Pacrg (ENSMOCG00000018703)
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	7	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226) #7	Gtf2h5 (ENSPEMG00000031016) #9	Tulp4 (ENSPEMG00000018536) #10	Tmem181a (ENSPEMG00000000341) #11	ENSPEMG00000018532 #12	Sytl3 (ENSPEMG00000014143) #14	Ezr (ENSPEMG00000008621) #15	ENSPEMG00000009961 #16	ENSPEMG00000010143 #17	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #23	Mrpl18 (ENSPEMG00000016836) #25	Pnldc1 (ENSPEMG00000016301) #26	Mas1 (ENSPEMG00000014302) #27	Igf2r (ENSPEMG00000016189) #29	Slc22a1 (ENSPEMG00000013645) #30	Slc22a2 (ENSPEMG00000009409) #31	Slc22a3 (ENSPEMG00000001370) #32	Plg (ENSPEMG00000006099) #33	Map3k4 (ENSPEMG00000011456) #36	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #37	Prkn (ENSPEMG00000013734)	ENSPEMG00000028613	ENSPEMG00000025332
Northern American deer mouse	MODERN SPECIES	7	Zdhhc14 (ENSPEMG00000019121)	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226) #7	Gtf2h5 (ENSPEMG00000031016) #9	Tulp4 (ENSPEMG00000018536) #10	Tmem181a (ENSPEMG00000000341) #11	ENSPEMG00000018532 #12	Sytl3 (ENSPEMG00000014143) #14	Ezr (ENSPEMG00000008621) #15	ENSPEMG00000009961 #16	ENSPEMG00000010143 #17	Fndc1 (ENSPEMG00000016047) #18	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #23	Mrpl18 (ENSPEMG00000016836) #25	Pnldc1 (ENSPEMG00000016301) #26	Mas1 (ENSPEMG00000014302) #27	Igf2r (ENSPEMG00000016189) #29	Slc22a1 (ENSPEMG00000013645) #30	Slc22a2 (ENSPEMG00000009409) #31	Slc22a3 (ENSPEMG00000001370) #32	Plg (ENSPEMG00000006099) #33	Map3k4 (ENSPEMG00000011456) #36	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #37	Prkn (ENSPEMG00000013734)	ENSPEMG00000028613
Murinae	ANCESTRAL SPECIES	29	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889) #7	Gtf2h5 (ENSRNOG00000018007) #9	Tulp4 (ENSRNOG00000018012) #10	Tmem181 (ENSRNOG00000018158) #11	Dynlt1 (ENSRNOG00000018207) #12	Sytl3 (ENSRNOG00000018321) #14	Ezr (ENSRNOG00000018524) #15	Rsph3 (ENSRNOG00000018762) #16	Tagap (ENSRNOG00000018915) #17	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #23	Mrpl18 (ENSRNOG00000014582) #25	Pnldc1 (ENSRNOG00000023140) #26	Mas1 (ENSRNOG00000014971) #27	Igf2r (ENSRNOG00000014997) #29	Slc22a1 (ENSRNOG00000016337) #30	Slc22a2 (ENSRNOG00000016625) #31	Slc22a3 (ENSRNOG00000022946) #32	Plg (ENSRNOG00000017223) #33	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #36	Agpat4 (ENSRNOG00000017731) #37	Prkn (ENSRNOG00000055547)	Pacrg (ENSRNOG00000068261)
Rat	MODERN SPECIES		Zdhhc14 (ENSRNOG00000029049)	Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889) #7	Gtf2h5 (ENSRNOG00000018007) #9	Tulp4 (ENSRNOG00000018012) #10	Tmem181 (ENSRNOG00000018158) #11	Dynlt1 (ENSRNOG00000018207) #12	Sytl3 (ENSRNOG00000018321) #14	Ezr (ENSRNOG00000018524) #15	Rsph3 (ENSRNOG00000018762) #16	Tagap (ENSRNOG00000018915) #17	Fndc1 (ENSRNOG00000030210) #18	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #23	Mrpl18 (ENSRNOG00000014582) #25	Pnldc1 (ENSRNOG00000023140) #26	Mas1 (ENSRNOG00000014971) #27	Igf2r (ENSRNOG00000014997) #29	Slc22a1 (ENSRNOG00000016337) #30	Slc22a2 (ENSRNOG00000016625) #31	Slc22a3 (ENSRNOG00000022946) #32	Plg (ENSRNOG00000017223) #33	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #36	Agpat4 (ENSRNOG00000017731) #37	Prkn (ENSRNOG00000055547)
Rat	MODERN SPECIES	5	Corin (ENSRNOG00000002302)	ENSRNOG00000069538	Atp10d (ENSRNOG00000002312)	Commd8 (ENSRNOG00000002320)	ENSRNOG00000066731	Gabrb1 (ENSRNOG00000002327)	Gabra4 (ENSRNOG00000002336)	Cox7b2 (ENSRNOG00000057953)	Gabra2 (ENSRNOG00000002349)	Gabrg1 (ENSRNOG00000002360)	ENSRNOG00000063124	Gnpda2 (ENSRNOG00000002177)	Guf1 (ENSRNOG00000002207)	Yipf7 (ENSRNOG00000002224)	Kctd8 (ENSRNOG00000063710)	ENSRNOG00000067037 #22	AABR07015525.1 (ENSRNOG00000056900)	Rtraf-ps2 (ENSRNOG00000029734)	ENSRNOG00000070341	Grxcr1 (ENSRNOG00000038891)	Atp8a1 (ENSRNOG00000034200)	Shisa3 (ENSRNOG00000025670)	ENSRNOG00000067394	Bend4 (ENSRNOG00000053303)	Slc30a9 (ENSRNOG00000002246)	Tmem33 (ENSRNOG00000002254)	Phox2b (ENSRNOG00000051929)	ENSRNOG00000065993	Limch1 (ENSRNOG00000002318)	Uchl1 (ENSRNOG00000002343)	Apbb2 (ENSRNOG00000063717)
Mus	ANCESTRAL SPECIES	21	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	13	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345) #7	Gtf2h5 (MGP_PahariEiJ_G0023346) #9	Tulp4 (MGP_PahariEiJ_G0023347) #10	Tmem181a (MGP_PahariEiJ_G0023348) #11	Sytl3 (MGP_PahariEiJ_G0023349) #14	Ezr (MGP_PahariEiJ_G0023350) #15	MGP_PahariEiJ_G0023351 #16	MGP_PahariEiJ_G0023352 #16	MGP_PahariEiJ_G0023353 #17	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #23	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #36	Agpat4 (MGP_PahariEiJ_G0023370) #37	Prkn (MGP_PahariEiJ_G0023371)	Pacrg (MGP_PahariEiJ_G0023372)	Qki (MGP_PahariEiJ_G0023373)
Shrew mouse	MODERN SPECIES	13	Zdhhc14 (MGP_PahariEiJ_G0023342)	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345) #7	Gtf2h5 (MGP_PahariEiJ_G0023346) #9	Tulp4 (MGP_PahariEiJ_G0023347) #10	Tmem181a (MGP_PahariEiJ_G0023348) #11	Sytl3 (MGP_PahariEiJ_G0023349) #14	Ezr (MGP_PahariEiJ_G0023350) #15	MGP_PahariEiJ_G0023351 #16	MGP_PahariEiJ_G0023352 #16	MGP_PahariEiJ_G0023353 #17	Fndc1 (MGP_PahariEiJ_G0023354) #18	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #23	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #36	Agpat4 (MGP_PahariEiJ_G0023370) #37	Prkn (MGP_PahariEiJ_G0023371)	Pacrg (MGP_PahariEiJ_G0023372)
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560 #7	ENSGT00390000004028 #9	ENSGT00940000155913 #10	ENSGT00390000007183 #11	ENSGT00940000154531 #12	ENSGT00940000160610 #14	ENSGT01090000260082.d.b #15	ENSGT00390000004172 #16	ENSGT00940000157993 #17	ENSGT00530000063558.B #18	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330	ENSGT00940000155310.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	9														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034
Mouse	MODERN SPECIES	8	Thbs2 (ENSMUSG00000023885)	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #23	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #27	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #36	Agpat4 (ENSMUSG00000023827) #37	Prkn (ENSMUSG00000023826)	Pacrg (ENSMUSG00000037196)
Mus_C	ANCESTRAL SPECIES	35													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034
spretus	MODERN SPECIES	8	Dll1 (MGP_SPRETEiJ_G0021994)	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #23	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) #30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #36	Agpat4 (MGP_SPRETEiJ_G0021966) #37	Prkn (MGP_SPRETEiJ_G0021965)	Pacrg (MGP_SPRETEiJ_G0021964)
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330
Mus_C	ANCESTRAL SPECIES	35												ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #22	ENSGT00550000074878 #23	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #36	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #37	ENSGT00390000011034	ENSGT00940000157330
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987)	Smoc2 (MGP_SPRETEiJ_G0021986)	Dact2 (MGP_SPRETEiJ_G0021985)	Afdn (MGP_SPRETEiJ_G0021984)	MGP_SPRETEiJ_G0021983	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #22	Tcp1 (MGP_SPRETEiJ_G0021977) #23	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) #30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #36	Agpat4 (MGP_SPRETEiJ_G0021966) #37	Prkn (MGP_SPRETEiJ_G0021965)	Pacrg (MGP_SPRETEiJ_G0021964)	Qki (MGP_SPRETEiJ_G0021963)
Steppe mouse	MODERN SPECIES	2213															ENSMSIG00000026854	ENSMSIG00000026841 #22	Tcp1 (ENSMSIG00000026789) #23	ENSMSIG00000026775 #25	Pnldc1 (ENSMSIG00000026738) #26	Mrgprh (ENSMSIG00000026732) #27	Mas1 (ENSMSIG00000026719) #27	ENSMSIG00000026712	ENSMSIG00000026700	ENSMSIG00000026694	Igf2r (ENSMSIG00000026592) #29	Slc22a1 (ENSMSIG00000026565) #30
Mouse	MODERN SPECIES	8	Smoc2 (ENSMUSG00000023886)	Dact2 (ENSMUSG00000048826)	Gm7358 (ENSMUSG00000101361)	Gm7356 (ENSMUSG00000101307)	Gm7168 (ENSMUSG00000067941)	Afdn (ENSMUSG00000068036)	Tcp10c (ENSMUSG00000052469)	Smok2b (ENSMUSG00000073457)	Smok2a (ENSMUSG00000073458)	Unc93a (ENSMUSG00000067049)	Tcp10b (ENSMUSG00000055602)	Gpr31b (ENSMUSG00000071311)	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #22	Tcp1 (ENSMUSG00000068039) #23	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #27	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #36	Agpat4 (ENSMUSG00000023827) #37	Prkn (ENSMUSG00000023826)	Pacrg (ENSMUSG00000037196)	Qki (ENSMUSG00000062078)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	8	Synj2 (MGP_CAROLIEiJ_G0021026)	Serac1 (MGP_CAROLIEiJ_G0021027) #7	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #9	Tulp4 (MGP_CAROLIEiJ_G0021029) #10	Tmem181a (MGP_CAROLIEiJ_G0021030) #11	MGP_CAROLIEiJ_G0021031 #12	MGP_CAROLIEiJ_G0021032 #12	Sytl3 (MGP_CAROLIEiJ_G0021033) #14	Ezr (MGP_CAROLIEiJ_G0021034) #15	MGP_CAROLIEiJ_G0021035 #16	MGP_CAROLIEiJ_G0021036 #16	MGP_CAROLIEiJ_G0021037 #17	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #23	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #36	Agpat4 (MGP_CAROLIEiJ_G0021054) #37	Prkn (MGP_CAROLIEiJ_G0021055)	Pacrg (MGP_CAROLIEiJ_G0021056)
Ryukyu mouse	MODERN SPECIES	8	Serac1 (MGP_CAROLIEiJ_G0021027) #7	Gtf2h5 (MGP_CAROLIEiJ_G0021028) #9	Tulp4 (MGP_CAROLIEiJ_G0021029) #10	Tmem181a (MGP_CAROLIEiJ_G0021030) #11	MGP_CAROLIEiJ_G0021031 #12	MGP_CAROLIEiJ_G0021032 #12	Sytl3 (MGP_CAROLIEiJ_G0021033) #14	Ezr (MGP_CAROLIEiJ_G0021034) #15	MGP_CAROLIEiJ_G0021035 #16	MGP_CAROLIEiJ_G0021036 #16	MGP_CAROLIEiJ_G0021037 #17	Fndc1 (MGP_CAROLIEiJ_G0021038) #18	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #23	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #36	Agpat4 (MGP_CAROLIEiJ_G0021054) #37	Prkn (MGP_CAROLIEiJ_G0021055)	Pacrg (MGP_CAROLIEiJ_G0021056)	Qki (MGP_CAROLIEiJ_G0021057)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	863													Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #23	Mrpl18 (ENSNGAG00000020549) #25	Pnldc1 (ENSNGAG00000017714) #26	Mas1 (ENSNGAG00000011460) #27	Igf2r (ENSNGAG00000015486) #29	Slc22a1 (ENSNGAG00000022062) #30
Upper Galilee mountains blind mole rat	MODERN SPECIES	863												Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #23	Mrpl18 (ENSNGAG00000020549) #25	Pnldc1 (ENSNGAG00000017714) #26	Mas1 (ENSNGAG00000011460) #27	Igf2r (ENSNGAG00000015486) #29	Slc22a1 (ENSNGAG00000022062) #30
Lesser Egyptian jerboa	MODERN SPECIES	44	Synj2 (ENSJJAG00000014436)	Serac1 (ENSJJAG00000008471) #7	Gtf2h5 (ENSJJAG00000014212) #9	ENSJJAG00000018115	ENSJJAG00000007576	Tulp4 (ENSJJAG00000015161) #10	ENSJJAG00000016901 #11	ENSJJAG00000021394 #12	Sytl3 (ENSJJAG00000000977) #14	Ezr (ENSJJAG00000018957) #15	ENSJJAG00000008005 #16	ENSJJAG00000002202 #17	Fndc1 (ENSJJAG00000019101) #18	Sod2 (ENSJJAG00000018002) #20	Wtap (ENSJJAG00000017886) #21	ENSJJAG00000022555 #22	ENSJJAG00000019850 #23	Pnldc1 (ENSJJAG00000009937) #26	Mas1 (ENSJJAG00000011567) #27	Igf2r (ENSJJAG00000019554) #29	Slc22a1 (ENSJJAG00000017119) #30	Slc22a2 (ENSJJAG00000020676) #31	Slc22a3 (ENSJJAG00000015842) #32	Plg (ENSJJAG00000023805) #33	ENSJJAG00000016960 #36	ENSJJAG00000017984 #36	Agpat4 (ENSJJAG00000024380) #37	Prkn (ENSJJAG00000011282)	ENSJJAG00000022340	Pacrg (ENSJJAG00000013819)	Qki (ENSJJAG00000022765)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	404											Adamts19 (ENSDORG00000012822)	Minar2 (ENSDORG00000026115)	Chsy3 (ENSDORG00000002765)	ENSDORG00000024861	ENSDORG00000026780	ENSDORG00000023323 #22	Smim3 (ENSDORG00000028277)	Dctn4 (ENSDORG00000008190)	Rbm22 (ENSDORG00000005329)	Myoz3 (ENSDORG00000005327)	Synpo (ENSDORG00000005325)	Ndst1 (ENSDORG00000016071)	ENSDORG00000007146	Cd74 (ENSDORG00000001514)	Arsi (ENSDORG00000009222)	Camk2a (ENSDORG00000009223)	Slc6a7 (ENSDORG00000000014)	Cdx1 (ENSDORG00000029630)	Pdgfrb (ENSDORG00000009895)	Csf1r (ENSDORG00000009892)	Hmgxb3 (ENSDORG00000009890)
Kangaroo rat	MODERN SPECIES	396					ENSDORG00000008869	Snx9 (ENSDORG00000007327)	Synj2 (ENSDORG00000014128)	Serac1 (ENSDORG00000014130) #7	ENSDORG00000005088 #9	Tulp4 (ENSDORG00000024333) #10	ENSDORG00000014045 #11	ENSDORG00000014053 #12	Ezr (ENSDORG00000015424) #15	Sod2 (ENSDORG00000001358) #20	ENSDORG00000026059 #21	ENSDORG00000011505 #22	ENSDORG00000011510 #23	Pnldc1 (ENSDORG00000011517) #26	Mas1 (ENSDORG00000003320) #27	Igf2r (ENSDORG00000009527) #29	Slc22a1 (ENSDORG00000011523) #30	Slc22a2 (ENSDORG00000008400) #31	Slc22a3 (ENSDORG00000008402) #32	Plg (ENSDORG00000024248) #33	ENSDORG00000025664 #36	Agpat4 (ENSDORG00000015627) #37	ENSDORG00000027142	ENSDORG00000026934	Qki (ENSDORG00000008151)	Pde10a (ENSDORG00000005783)	ENSDORG00000012736