Mus	ANCESTRAL SPECIES	21	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	9														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Mouse	MODERN SPECIES	8	Thbs2 (ENSMUSG00000023885) #7	Smoc2 (ENSMUSG00000023886) #8	Dact2 (ENSMUSG00000048826) #9	Gm7358 (ENSMUSG00000101361) #10	Gm7356 (ENSMUSG00000101307) #11	Gm7168 (ENSMUSG00000067941) #12	Afdn (ENSMUSG00000068036) #13	Tcp10c (ENSMUSG00000052469) #14	Smok2b (ENSMUSG00000073457) #15	Smok2a (ENSMUSG00000073458) #16	Unc93a (ENSMUSG00000067049) #17	Tcp10b (ENSMUSG00000055602) #18	Gpr31b (ENSMUSG00000071311) #19	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #23	Tcp1 (ENSMUSG00000068039) #24	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #28	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #34	Agpat4 (ENSMUSG00000023827) #35	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196) #37
Mus_C	ANCESTRAL SPECIES	35													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
spretus	MODERN SPECIES	8	Dll1 (MGP_SPRETEiJ_G0021994)	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987) #7	Smoc2 (MGP_SPRETEiJ_G0021986) #8	Dact2 (MGP_SPRETEiJ_G0021985) #9	Afdn (MGP_SPRETEiJ_G0021984) #13	MGP_SPRETEiJ_G0021983 ##10	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #23	Tcp1 (MGP_SPRETEiJ_G0021977) #24	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) ##30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #34	Agpat4 (MGP_SPRETEiJ_G0021966) #35	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964) #37
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Mus_C	ANCESTRAL SPECIES	35												ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987) #7	Smoc2 (MGP_SPRETEiJ_G0021986) #8	Dact2 (MGP_SPRETEiJ_G0021985) #9	Afdn (MGP_SPRETEiJ_G0021984) #13	MGP_SPRETEiJ_G0021983 ##10	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #23	Tcp1 (MGP_SPRETEiJ_G0021977) #24	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) ##30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #34	Agpat4 (MGP_SPRETEiJ_G0021966) #35	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964) #37	Qki (MGP_SPRETEiJ_G0021963)
Steppe mouse	MODERN SPECIES	2213															ENSMSIG00000026854	ENSMSIG00000026841 #23	Tcp1 (ENSMSIG00000026789) #24	ENSMSIG00000026775 #25	Pnldc1 (ENSMSIG00000026738) #26	Mrgprh (ENSMSIG00000026732) #27	Mas1 (ENSMSIG00000026719) #27	ENSMSIG00000026712	ENSMSIG00000026700	ENSMSIG00000026694	Igf2r (ENSMSIG00000026592) #29	Slc22a1 (ENSMSIG00000026565) #30
Mouse	MODERN SPECIES	8	Smoc2 (ENSMUSG00000023886) #8	Dact2 (ENSMUSG00000048826) #9	Gm7358 (ENSMUSG00000101361) #10	Gm7356 (ENSMUSG00000101307) #11	Gm7168 (ENSMUSG00000067941) #12	Afdn (ENSMUSG00000068036) #13	Tcp10c (ENSMUSG00000052469) #14	Smok2b (ENSMUSG00000073457) #15	Smok2a (ENSMUSG00000073458) #16	Unc93a (ENSMUSG00000067049) #17	Tcp10b (ENSMUSG00000055602) #18	Gpr31b (ENSMUSG00000071311) #19	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #23	Tcp1 (ENSMUSG00000068039) #24	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #28	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #34	Agpat4 (ENSMUSG00000023827) #35	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196) #37	Qki (ENSMUSG00000062078)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	8	Synj2 (MGP_CAROLIEiJ_G0021026)	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028)	Tulp4 (MGP_CAROLIEiJ_G0021029)	Tmem181a (MGP_CAROLIEiJ_G0021030)	MGP_CAROLIEiJ_G0021031	MGP_CAROLIEiJ_G0021032	Sytl3 (MGP_CAROLIEiJ_G0021033)	Ezr (MGP_CAROLIEiJ_G0021034)	MGP_CAROLIEiJ_G0021035	MGP_CAROLIEiJ_G0021036	MGP_CAROLIEiJ_G0021037	Fndc1 (MGP_CAROLIEiJ_G0021038)	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #24	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #34	Agpat4 (MGP_CAROLIEiJ_G0021054) #35	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056) #37
Ryukyu mouse	MODERN SPECIES	8	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028)	Tulp4 (MGP_CAROLIEiJ_G0021029)	Tmem181a (MGP_CAROLIEiJ_G0021030)	MGP_CAROLIEiJ_G0021031	MGP_CAROLIEiJ_G0021032	Sytl3 (MGP_CAROLIEiJ_G0021033)	Ezr (MGP_CAROLIEiJ_G0021034)	MGP_CAROLIEiJ_G0021035	MGP_CAROLIEiJ_G0021036	MGP_CAROLIEiJ_G0021037	Fndc1 (MGP_CAROLIEiJ_G0021038)	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #24	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #34	Agpat4 (MGP_CAROLIEiJ_G0021054) #35	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056) #37	Qki (MGP_CAROLIEiJ_G0021057)
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	13	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346)	Tulp4 (MGP_PahariEiJ_G0023347)	Tmem181a (MGP_PahariEiJ_G0023348)	Sytl3 (MGP_PahariEiJ_G0023349)	Ezr (MGP_PahariEiJ_G0023350)	MGP_PahariEiJ_G0023351	MGP_PahariEiJ_G0023352	MGP_PahariEiJ_G0023353	Fndc1 (MGP_PahariEiJ_G0023354)	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #24	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #34	Agpat4 (MGP_PahariEiJ_G0023370) #35	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372) #37	Qki (MGP_PahariEiJ_G0023373)
Shrew mouse	MODERN SPECIES	13	Zdhhc14 (MGP_PahariEiJ_G0023342)	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346)	Tulp4 (MGP_PahariEiJ_G0023347)	Tmem181a (MGP_PahariEiJ_G0023348)	Sytl3 (MGP_PahariEiJ_G0023349)	Ezr (MGP_PahariEiJ_G0023350)	MGP_PahariEiJ_G0023351	MGP_PahariEiJ_G0023352	MGP_PahariEiJ_G0023353	Fndc1 (MGP_PahariEiJ_G0023354)	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #24	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #34	Agpat4 (MGP_PahariEiJ_G0023370) #35	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372) #37