Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Bilateria	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Euteleostomi	ANCESTRAL SPECIES	289				ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24
Sarcopterygii	ANCESTRAL SPECIES	414									ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24
Tetrapoda	ANCESTRAL SPECIES	79	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000013943 #29	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877	ENSGT00940000156543	ENSGT00420000030417	ENSGT00940000157912
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089 #31	ENSGT00940000162065 #30	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089 #31	ENSGT00940000162065 #30	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Theria	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00950000186343
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Glires	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Rodentia	ANCESTRAL SPECIES	6	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Murinae	ANCESTRAL SPECIES	29	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus	ANCESTRAL SPECIES	21	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mus_B	DUPLICATION
Mus_B	ANCESTRAL SPECIES	9														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Mouse	MODERN SPECIES	8	Thbs2 (ENSMUSG00000023885) #7	Smoc2 (ENSMUSG00000023886) #8	Dact2 (ENSMUSG00000048826) #9	Gm7358 (ENSMUSG00000101361) #10	Gm7356 (ENSMUSG00000101307) #11	Gm7168 (ENSMUSG00000067941) #12	Afdn (ENSMUSG00000068036) #13	Tcp10c (ENSMUSG00000052469) #14	Smok2b (ENSMUSG00000073457) #15	Smok2a (ENSMUSG00000073458) #16	Unc93a (ENSMUSG00000067049) #17	Tcp10b (ENSMUSG00000055602) #18	Gpr31b (ENSMUSG00000071311) #19	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #23	Tcp1 (ENSMUSG00000068039) #24	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #28	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #34	Agpat4 (ENSMUSG00000023827) #35	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196) #37
Mus_C	ANCESTRAL SPECIES	35													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
spretus	MODERN SPECIES	8	Dll1 (MGP_SPRETEiJ_G0021994)	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987) #7	Smoc2 (MGP_SPRETEiJ_G0021986) #8	Dact2 (MGP_SPRETEiJ_G0021985) #9	Afdn (MGP_SPRETEiJ_G0021984) #13	MGP_SPRETEiJ_G0021983 ##10	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #23	Tcp1 (MGP_SPRETEiJ_G0021977) #24	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) ##30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #34	Agpat4 (MGP_SPRETEiJ_G0021966) #35	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964) #37
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Mus_C	ANCESTRAL SPECIES	35												ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B.o #22	ENSGT01030000234626.B.p #23	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065.c.a #30	ENSGT00940000162065.d ##30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0021993	MGP_SPRETEiJ_G0021992	MGP_SPRETEiJ_G0021991	Phf10 (MGP_SPRETEiJ_G0021990)	1600012H06Rik (MGP_SPRETEiJ_G0021989)	Wdr27 (MGP_SPRETEiJ_G0021988)	Thbs2 (MGP_SPRETEiJ_G0021987) #7	Smoc2 (MGP_SPRETEiJ_G0021986) #8	Dact2 (MGP_SPRETEiJ_G0021985) #9	Afdn (MGP_SPRETEiJ_G0021984) #13	MGP_SPRETEiJ_G0021983 ##10	MGP_SPRETEiJ_G0021982	Sod2 (MGP_SPRETEiJ_G0021981) #20	MGP_SPRETEiJ_G0021980 ##21	MGP_SPRETEiJ_G0021979 #22	Acat3 (MGP_SPRETEiJ_G0021978) #23	Tcp1 (MGP_SPRETEiJ_G0021977) #24	Mrpl18 (MGP_SPRETEiJ_G0021976) #25	Pnldc1 (MGP_SPRETEiJ_G0021975) #26	Mrgprh (MGP_SPRETEiJ_G0021974) #27	Mas1 (MGP_SPRETEiJ_G0021973) #27	Igf2r (MGP_SPRETEiJ_G0021972) #29	Slc22a1 (MGP_SPRETEiJ_G0021971) ##30	Slc22a2 (MGP_SPRETEiJ_G0021970) #31	Slc22a3 (MGP_SPRETEiJ_G0021969) #32	Plg (MGP_SPRETEiJ_G0021968) #33	Map3k4 (MGP_SPRETEiJ_G0021967) #34	Agpat4 (MGP_SPRETEiJ_G0021966) #35	Prkn (MGP_SPRETEiJ_G0021965) #36	Pacrg (MGP_SPRETEiJ_G0021964) #37	Qki (MGP_SPRETEiJ_G0021963)
Steppe mouse	MODERN SPECIES	2213															ENSMSIG00000026854	ENSMSIG00000026841 #23	Tcp1 (ENSMSIG00000026789) #24	ENSMSIG00000026775 #25	Pnldc1 (ENSMSIG00000026738) #26	Mrgprh (ENSMSIG00000026732) #27	Mas1 (ENSMSIG00000026719) #27	ENSMSIG00000026712	ENSMSIG00000026700	ENSMSIG00000026694	Igf2r (ENSMSIG00000026592) #29	Slc22a1 (ENSMSIG00000026565) #30
Mouse	MODERN SPECIES	8	Smoc2 (ENSMUSG00000023886) #8	Dact2 (ENSMUSG00000048826) #9	Gm7358 (ENSMUSG00000101361) #10	Gm7356 (ENSMUSG00000101307) #11	Gm7168 (ENSMUSG00000067941) #12	Afdn (ENSMUSG00000068036) #13	Tcp10c (ENSMUSG00000052469) #14	Smok2b (ENSMUSG00000073457) #15	Smok2a (ENSMUSG00000073458) #16	Unc93a (ENSMUSG00000067049) #17	Tcp10b (ENSMUSG00000055602) #18	Gpr31b (ENSMUSG00000071311) #19	Sod2 (ENSMUSG00000006818) #20	Wtap (ENSMUSG00000060475) #21	Acat2 (ENSMUSG00000023832) #22	Acat3 (ENSMUSG00000062480) #23	Tcp1 (ENSMUSG00000068039) #24	Mrpl18 (ENSMUSG00000057388) #25	Pnldc1 (ENSMUSG00000073460) #26	Mrgprh (ENSMUSG00000059408) #27	Mas1 (ENSMUSG00000068037) #28	Igf2r (ENSMUSG00000023830) #29	Slc22a1 (ENSMUSG00000023829) #30	Slc22a2 (ENSMUSG00000040966) #31	Slc22a3 (ENSMUSG00000023828) #32	Plg (ENSMUSG00000059481) #33	Map3k4 (ENSMUSG00000014426) #34	Agpat4 (ENSMUSG00000023827) #35	Prkn (ENSMUSG00000023826) #36	Pacrg (ENSMUSG00000037196) #37	Qki (ENSMUSG00000062078)
Ryukyu mouse	DUPLICATION
Ryukyu mouse	MODERN SPECIES	8	Synj2 (MGP_CAROLIEiJ_G0021026)	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028)	Tulp4 (MGP_CAROLIEiJ_G0021029)	Tmem181a (MGP_CAROLIEiJ_G0021030)	MGP_CAROLIEiJ_G0021031	MGP_CAROLIEiJ_G0021032	Sytl3 (MGP_CAROLIEiJ_G0021033)	Ezr (MGP_CAROLIEiJ_G0021034)	MGP_CAROLIEiJ_G0021035	MGP_CAROLIEiJ_G0021036	MGP_CAROLIEiJ_G0021037	Fndc1 (MGP_CAROLIEiJ_G0021038)	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #24	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #34	Agpat4 (MGP_CAROLIEiJ_G0021054) #35	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056) #37
Ryukyu mouse	MODERN SPECIES	8	Serac1 (MGP_CAROLIEiJ_G0021027)	Gtf2h5 (MGP_CAROLIEiJ_G0021028)	Tulp4 (MGP_CAROLIEiJ_G0021029)	Tmem181a (MGP_CAROLIEiJ_G0021030)	MGP_CAROLIEiJ_G0021031	MGP_CAROLIEiJ_G0021032	Sytl3 (MGP_CAROLIEiJ_G0021033)	Ezr (MGP_CAROLIEiJ_G0021034)	MGP_CAROLIEiJ_G0021035	MGP_CAROLIEiJ_G0021036	MGP_CAROLIEiJ_G0021037	Fndc1 (MGP_CAROLIEiJ_G0021038)	Sod2 (MGP_CAROLIEiJ_G0021039) #20	MGP_CAROLIEiJ_G0021040 ##21	MGP_CAROLIEiJ_G0021041 #22	MGP_CAROLIEiJ_G0021042 #22	Tcp1 (MGP_CAROLIEiJ_G0021043) #24	Mrpl18 (MGP_CAROLIEiJ_G0021044) #25	Pnldc1 (MGP_CAROLIEiJ_G0021045) #26	Mrgprh (MGP_CAROLIEiJ_G0021046) #27	Mas1 (MGP_CAROLIEiJ_G0021047) #27	MGP_CAROLIEiJ_G0021048	Slc22a1 (MGP_CAROLIEiJ_G0021049) #30	Slc22a2 (MGP_CAROLIEiJ_G0021050) #31	Slc22a3 (MGP_CAROLIEiJ_G0021051) #32	Plg (MGP_CAROLIEiJ_G0021052) #33	Map3k4 (MGP_CAROLIEiJ_G0021053) #34	Agpat4 (MGP_CAROLIEiJ_G0021054) #35	Prkn (MGP_CAROLIEiJ_G0021055) #36	Pacrg (MGP_CAROLIEiJ_G0021056) #37	Qki (MGP_CAROLIEiJ_G0021057)
Shrew mouse	DUPLICATION
Shrew mouse	MODERN SPECIES	13	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346)	Tulp4 (MGP_PahariEiJ_G0023347)	Tmem181a (MGP_PahariEiJ_G0023348)	Sytl3 (MGP_PahariEiJ_G0023349)	Ezr (MGP_PahariEiJ_G0023350)	MGP_PahariEiJ_G0023351	MGP_PahariEiJ_G0023352	MGP_PahariEiJ_G0023353	Fndc1 (MGP_PahariEiJ_G0023354)	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #24	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #34	Agpat4 (MGP_PahariEiJ_G0023370) #35	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372) #37	Qki (MGP_PahariEiJ_G0023373)
Shrew mouse	MODERN SPECIES	13	Zdhhc14 (MGP_PahariEiJ_G0023342)	Snx9 (MGP_PahariEiJ_G0023343)	Synj2 (MGP_PahariEiJ_G0023344)	Serac1 (MGP_PahariEiJ_G0023345)	Gtf2h5 (MGP_PahariEiJ_G0023346)	Tulp4 (MGP_PahariEiJ_G0023347)	Tmem181a (MGP_PahariEiJ_G0023348)	Sytl3 (MGP_PahariEiJ_G0023349)	Ezr (MGP_PahariEiJ_G0023350)	MGP_PahariEiJ_G0023351	MGP_PahariEiJ_G0023352	MGP_PahariEiJ_G0023353	Fndc1 (MGP_PahariEiJ_G0023354)	Sod2 (MGP_PahariEiJ_G0023355) #20	MGP_PahariEiJ_G0023356 ##21	MGP_PahariEiJ_G0023357 #22	MGP_PahariEiJ_G0023358 #22	Tcp1 (MGP_PahariEiJ_G0023359) #24	Mrpl18 (MGP_PahariEiJ_G0023360) #25	Pnldc1 (MGP_PahariEiJ_G0023361) #26	Mrgprh (MGP_PahariEiJ_G0023362) #27	Mas1 (MGP_PahariEiJ_G0023363) #27	Igf2r (MGP_PahariEiJ_G0023364) #29	Slc22a1 (MGP_PahariEiJ_G0023365) #30	Slc22a2 (MGP_PahariEiJ_G0023366) #31	Slc22a3 (MGP_PahariEiJ_G0023367) #32	Plg (MGP_PahariEiJ_G0023368) #33	Map3k4 (MGP_PahariEiJ_G0023369) #34	Agpat4 (MGP_PahariEiJ_G0023370) #35	Prkn (MGP_PahariEiJ_G0023371) #36	Pacrg (MGP_PahariEiJ_G0023372) #37
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES		Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889)	Gtf2h5 (ENSRNOG00000018007)	Tulp4 (ENSRNOG00000018012)	Tmem181 (ENSRNOG00000018158)	Dynlt1 (ENSRNOG00000018207)	Sytl3 (ENSRNOG00000018321)	Ezr (ENSRNOG00000018524)	Rsph3 (ENSRNOG00000018762)	Tagap (ENSRNOG00000018915)	Fndc1 (ENSRNOG00000030210)	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #24	Mrpl18 (ENSRNOG00000014582) #25	Pnldc1 (ENSRNOG00000023140) #26	Mas1 (ENSRNOG00000014971) #27	Igf2r (ENSRNOG00000014997) #29	Slc22a1 (ENSRNOG00000016337) #30	Slc22a2 (ENSRNOG00000016625) #31	Slc22a3 (ENSRNOG00000022946) #32	Plg (ENSRNOG00000017223) #33	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #34	Agpat4 (ENSRNOG00000017731) #35	Prkn (ENSRNOG00000055547) #36	Pacrg (ENSRNOG00000068261) #37
Rat	MODERN SPECIES		Zdhhc14 (ENSRNOG00000029049)	Snx9 (ENSRNOG00000046874)	Synj2 (ENSRNOG00000017114)	Serac1 (ENSRNOG00000017889)	Gtf2h5 (ENSRNOG00000018007)	Tulp4 (ENSRNOG00000018012)	Tmem181 (ENSRNOG00000018158)	Dynlt1 (ENSRNOG00000018207)	Sytl3 (ENSRNOG00000018321)	Ezr (ENSRNOG00000018524)	Rsph3 (ENSRNOG00000018762)	Tagap (ENSRNOG00000018915)	Fndc1 (ENSRNOG00000030210)	Sod2 (ENSRNOG00000019048) #20	Wtap (ENSRNOG00000019091) #21	Acat2 (ENSRNOG00000019189) #22	Acat2l1 (ENSRNOG00000013975) #22	ENSRNOG00000069754	Tcp1 (ENSRNOG00000014160) #24	Mrpl18 (ENSRNOG00000014582) #25	Pnldc1 (ENSRNOG00000023140) #26	Mas1 (ENSRNOG00000014971) #27	Igf2r (ENSRNOG00000014997) #29	Slc22a1 (ENSRNOG00000016337) #30	Slc22a2 (ENSRNOG00000016625) #31	Slc22a3 (ENSRNOG00000022946) #32	Plg (ENSRNOG00000017223) #33	AABR07001512.1 (ENSRNOG00000017412)	Map3k4 (ENSRNOG00000017419) #34	Agpat4 (ENSRNOG00000017731) #35	Prkn (ENSRNOG00000055547) #36
Rat	MODERN SPECIES	5	Corin (ENSRNOG00000002302)	ENSRNOG00000069538	Atp10d (ENSRNOG00000002312)	Commd8 (ENSRNOG00000002320)	ENSRNOG00000066731	Gabrb1 (ENSRNOG00000002327)	Gabra4 (ENSRNOG00000002336)	Cox7b2 (ENSRNOG00000057953)	Gabra2 (ENSRNOG00000002349)	Gabrg1 (ENSRNOG00000002360)	ENSRNOG00000063124	Gnpda2 (ENSRNOG00000002177)	Guf1 (ENSRNOG00000002207)	Yipf7 (ENSRNOG00000002224)	Kctd8 (ENSRNOG00000063710)	ENSRNOG00000067037 #22	AABR07015525.1 (ENSRNOG00000056900)	Rtraf-ps2 (ENSRNOG00000029734)	ENSRNOG00000070341	Grxcr1 (ENSRNOG00000038891)	Atp8a1 (ENSRNOG00000034200)	Shisa3 (ENSRNOG00000025670)	ENSRNOG00000067394	Bend4 (ENSRNOG00000053303)	Slc30a9 (ENSRNOG00000002246)	Tmem33 (ENSRNOG00000002254)	Phox2b (ENSRNOG00000051929)	ENSRNOG00000065993	Limch1 (ENSRNOG00000002318)	Uchl1 (ENSRNOG00000002343)	Apbb2 (ENSRNOG00000063717)
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Snx9 (ENSCGRG00001001484)	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521)	ENSCGRG00001013373	Tulp4 (ENSCGRG00001020408)	Tmem181a (ENSCGRG00001020931)	ENSCGRG00001024351	Sytl3 (ENSCGRG00001021896)	Ezr (ENSCGRG00001022444)	ENSCGRG00001023672	ENSCGRG00001002978	Fndc1 (ENSCGRG00001004306)	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #24	Mrpl18 (ENSCGRG00001010667) #25	ENSCGRG00001007470 #26	Mas1 (ENSCGRG00001007652) #27	Igf2r (ENSCGRG00001022921) #29	Slc22a1 (ENSCGRG00001023484) #30	Slc22a2 (ENSCGRG00001023859) #31	Slc22a3 (ENSCGRG00001024404) #32	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #33	Map3k4 (ENSCGRG00001023770) #34	Agpat4 (ENSCGRG00001024340) #35	Prkn (ENSCGRG00001011980) #36	ENSCGRG00001009195
Chinese hamster chok1gshd	MODERN SPECIES	1	Synj2 (ENSCGRG00001004257)	ENSCGRG00001008515	Serac1 (ENSCGRG00001012521)	ENSCGRG00001013373	Tulp4 (ENSCGRG00001020408)	Tmem181a (ENSCGRG00001020931)	ENSCGRG00001024351	Sytl3 (ENSCGRG00001021896)	Ezr (ENSCGRG00001022444)	ENSCGRG00001023672	ENSCGRG00001002978	Fndc1 (ENSCGRG00001004306)	Sod2 (ENSCGRG00001001155) #20	Wtap (ENSCGRG00001003444) #21	ENSCGRG00001024790 #22	ENSCGRG00001024850 #22	TCP1 (ENSCGRG00001007629) #24	Mrpl18 (ENSCGRG00001010667) #25	ENSCGRG00001007470 #26	Mas1 (ENSCGRG00001007652) #27	Igf2r (ENSCGRG00001022921) #29	Slc22a1 (ENSCGRG00001023484) #30	Slc22a2 (ENSCGRG00001023859) #31	Slc22a3 (ENSCGRG00001024404) #32	ENSCGRG00001022809	Plg (ENSCGRG00001023181) #33	Map3k4 (ENSCGRG00001023770) #34	Agpat4 (ENSCGRG00001024340) #35	Prkn (ENSCGRG00001011980) #36	ENSCGRG00001009195	Pacrg (ENSCGRG00001010865) #37
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	358	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727)	Gtf2h5 (ENSMOCG00000000992)	Tulp4 (ENSMOCG00000020984)	ENSMOCG00000013123	ENSMOCG00000011752	Sytl3 (ENSMOCG00000014797)	Ezr (ENSMOCG00000016414)	ENSMOCG00000018649	Fndc1 (ENSMOCG00000009408)	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #24	Mrpl18 (ENSMOCG00000016680) #25	Pnldc1 (ENSMOCG00000014287) #26	Mas1 (ENSMOCG00000012154) #27	Igf2r (ENSMOCG00000016653) #29	Slc22a1 (ENSMOCG00000006138) #30	Slc22a2 (ENSMOCG00000000432) #31	Slc22a3 (ENSMOCG00000009699) #32	Plg (ENSMOCG00000021058) #33	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #34	Agpat4 (ENSMOCG00000002544) #35	Prkn (ENSMOCG00000000910) #36	Pacrg (ENSMOCG00000018703) #37	Qki (ENSMOCG00000008370)
Prairie vole	MODERN SPECIES	358	Tmem242 (ENSMOCG00000011673)	Zdhhc14 (ENSMOCG00000010952)	Snx9 (ENSMOCG00000021777)	Synj2 (ENSMOCG00000020054)	Serac1 (ENSMOCG00000006727)	Gtf2h5 (ENSMOCG00000000992)	Tulp4 (ENSMOCG00000020984)	ENSMOCG00000013123	ENSMOCG00000011752	Sytl3 (ENSMOCG00000014797)	Ezr (ENSMOCG00000016414)	ENSMOCG00000018649	Fndc1 (ENSMOCG00000009408)	Sod2 (ENSMOCG00000021263) #20	Wtap (ENSMOCG00000015976) #21	ENSMOCG00000016415 #22	ENSMOCG00000000514 #22	Tcp1 (ENSMOCG00000020265) #24	Mrpl18 (ENSMOCG00000016680) #25	Pnldc1 (ENSMOCG00000014287) #26	Mas1 (ENSMOCG00000012154) #27	Igf2r (ENSMOCG00000016653) #29	Slc22a1 (ENSMOCG00000006138) #30	Slc22a2 (ENSMOCG00000000432) #31	Slc22a3 (ENSMOCG00000009699) #32	Plg (ENSMOCG00000021058) #33	ENSMOCG00000016399	Map3k4 (ENSMOCG00000015705) #34	Agpat4 (ENSMOCG00000002544) #35	Prkn (ENSMOCG00000000910) #36	Pacrg (ENSMOCG00000018703) #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	7	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226)	Gtf2h5 (ENSPEMG00000031016)	Tulp4 (ENSPEMG00000018536)	Tmem181a (ENSPEMG00000000341)	ENSPEMG00000018532	Sytl3 (ENSPEMG00000014143)	Ezr (ENSPEMG00000008621)	ENSPEMG00000009961	ENSPEMG00000010143	Fndc1 (ENSPEMG00000016047)	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #24	Mrpl18 (ENSPEMG00000016836) #25	Pnldc1 (ENSPEMG00000016301) #26	Mas1 (ENSPEMG00000014302) #27	Igf2r (ENSPEMG00000016189) #29	Slc22a1 (ENSPEMG00000013645) #30	Slc22a2 (ENSPEMG00000009409) #31	Slc22a3 (ENSPEMG00000001370) #32	Plg (ENSPEMG00000006099) #33	Map3k4 (ENSPEMG00000011456) #34	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #35	Prkn (ENSPEMG00000013734) #36	ENSPEMG00000028613	ENSPEMG00000025332
Northern American deer mouse	MODERN SPECIES	7	Zdhhc14 (ENSPEMG00000019121)	Snx9 (ENSPEMG00000018518)	Synj2 (ENSPEMG00000006247)	Serac1 (ENSPEMG00000010226)	Gtf2h5 (ENSPEMG00000031016)	Tulp4 (ENSPEMG00000018536)	Tmem181a (ENSPEMG00000000341)	ENSPEMG00000018532	Sytl3 (ENSPEMG00000014143)	Ezr (ENSPEMG00000008621)	ENSPEMG00000009961	ENSPEMG00000010143	Fndc1 (ENSPEMG00000016047)	Sod2 (ENSPEMG00000013472) #20	Wtap (ENSPEMG00000013632) #21	ENSPEMG00000017398 #22	ENSPEMG00000002107 #22	Tcp1 (ENSPEMG00000012176) #24	Mrpl18 (ENSPEMG00000016836) #25	Pnldc1 (ENSPEMG00000016301) #26	Mas1 (ENSPEMG00000014302) #27	Igf2r (ENSPEMG00000016189) #29	Slc22a1 (ENSPEMG00000013645) #30	Slc22a2 (ENSPEMG00000009409) #31	Slc22a3 (ENSPEMG00000001370) #32	Plg (ENSPEMG00000006099) #33	Map3k4 (ENSPEMG00000011456) #34	ENSPEMG00000007201	Agpat4 (ENSPEMG00000000276) #35	Prkn (ENSPEMG00000013734) #36	ENSPEMG00000028613
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	863													Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #24	Mrpl18 (ENSNGAG00000020549) #25	Pnldc1 (ENSNGAG00000017714) #26	Mas1 (ENSNGAG00000011460) #27	Igf2r (ENSNGAG00000015486) #29	Slc22a1 (ENSNGAG00000022062) #30
Upper Galilee mountains blind mole rat	MODERN SPECIES	863												Sod2 (ENSNGAG00000012434) #20	ENSNGAG00000015643	Wtap (ENSNGAG00000015946) #21	ENSNGAG00000007657 #22	ENSNGAG00000012479 #22	Tcp1 (ENSNGAG00000008831) #24	Mrpl18 (ENSNGAG00000020549) #25	Pnldc1 (ENSNGAG00000017714) #26	Mas1 (ENSNGAG00000011460) #27	Igf2r (ENSNGAG00000015486) #29	Slc22a1 (ENSNGAG00000022062) #30
Lesser Egyptian jerboa	MODERN SPECIES	44	Synj2 (ENSJJAG00000014436)	Serac1 (ENSJJAG00000008471)	Gtf2h5 (ENSJJAG00000014212)	ENSJJAG00000018115	ENSJJAG00000007576	Tulp4 (ENSJJAG00000015161)	ENSJJAG00000016901	ENSJJAG00000021394	Sytl3 (ENSJJAG00000000977)	Ezr (ENSJJAG00000018957)	ENSJJAG00000008005	ENSJJAG00000002202	Fndc1 (ENSJJAG00000019101)	Sod2 (ENSJJAG00000018002) #20	Wtap (ENSJJAG00000017886) #21	ENSJJAG00000022555 #22	ENSJJAG00000019850 #24	Pnldc1 (ENSJJAG00000009937) #26	Mas1 (ENSJJAG00000011567) #27	Igf2r (ENSJJAG00000019554) #29	Slc22a1 (ENSJJAG00000017119) #30	Slc22a2 (ENSJJAG00000020676) #31	Slc22a3 (ENSJJAG00000015842) #32	Plg (ENSJJAG00000023805) #33	ENSJJAG00000016960 #34	ENSJJAG00000017984 #34	Agpat4 (ENSJJAG00000024380) #35	Prkn (ENSJJAG00000011282) #36	ENSJJAG00000022340	Pacrg (ENSJJAG00000013819) #37	Qki (ENSJJAG00000022765)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	404											Adamts19 (ENSDORG00000012822)	Minar2 (ENSDORG00000026115)	Chsy3 (ENSDORG00000002765)	ENSDORG00000024861	ENSDORG00000026780	ENSDORG00000023323 #22	Smim3 (ENSDORG00000028277)	Dctn4 (ENSDORG00000008190)	Rbm22 (ENSDORG00000005329)	Myoz3 (ENSDORG00000005327)	Synpo (ENSDORG00000005325)	Ndst1 (ENSDORG00000016071)	ENSDORG00000007146	Cd74 (ENSDORG00000001514)	Arsi (ENSDORG00000009222)	Camk2a (ENSDORG00000009223)	Slc6a7 (ENSDORG00000000014)	Cdx1 (ENSDORG00000029630)	Pdgfrb (ENSDORG00000009895)	Csf1r (ENSDORG00000009892)	Hmgxb3 (ENSDORG00000009890)
Kangaroo rat	MODERN SPECIES	396					ENSDORG00000008869	Snx9 (ENSDORG00000007327)	Synj2 (ENSDORG00000014128)	Serac1 (ENSDORG00000014130)	ENSDORG00000005088	Tulp4 (ENSDORG00000024333)	ENSDORG00000014045	ENSDORG00000014053	Ezr (ENSDORG00000015424)	Sod2 (ENSDORG00000001358) #20	ENSDORG00000026059 #21	ENSDORG00000011505 #22	ENSDORG00000011510 #24	Pnldc1 (ENSDORG00000011517) #26	Mas1 (ENSDORG00000003320) #27	Igf2r (ENSDORG00000009527) #29	Slc22a1 (ENSDORG00000011523) #30	Slc22a2 (ENSDORG00000008400) #31	Slc22a3 (ENSDORG00000008402) #32	Plg (ENSDORG00000024248) #33	ENSDORG00000025664 #34	Agpat4 (ENSDORG00000015627) #35	ENSDORG00000027142 #36	ENSDORG00000026934 #37	Qki (ENSDORG00000008151)	Pde10a (ENSDORG00000005783)	ENSDORG00000012736
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.`b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000015545.v	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.`b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000015545.v	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Squirrel	MODERN SPECIES	89	SNX9 (ENSSTOG00000010620)	SYNJ2 (ENSSTOG00000016474)	SERAC1 (ENSSTOG00000016478)	GTF2H5 (ENSSTOG00000003476)	TULP4 (ENSSTOG00000006169)	TMEM181 (ENSSTOG00000006218)	ENSSTOG00000006273	SYTL3 (ENSSTOG00000006284)	EZR (ENSSTOG00000006325)	RSPH3 (ENSSTOG00000021240)	TAGAP (ENSSTOG00000021563)	FNDC1 (ENSSTOG00000007105)	ENSSTOG00000033536	SOD2 (ENSSTOG00000008738) #20	WTAP (ENSSTOG00000026157) #21	ACAT2 (ENSSTOG00000005564) #22	ENSSTOG00000005572 #24	MRPL18 (ENSSTOG00000005583) #25	PNLDC1 (ENSSTOG00000005595) #26	ENSSTOG00000026373 #27	MAS1 (ENSSTOG00000029761) #27	IGF2R (ENSSTOG00000008960) #29	SLC22A1 (ENSSTOG00000009024) #30	SLC22A2 (ENSSTOG00000010147) #31	SLC22A3 (ENSSTOG00000007036) #32	ENSSTOG00000020315 #33	MAP3K4 (ENSSTOG00000002821) #34	AGPAT4 (ENSSTOG00000002544) #35	PRKN (ENSSTOG00000021965) #36	ENSSTOG00000034364	PACRG (ENSSTOG00000010375) #37
Alpin marmot	MODERN SPECIES	55	SNX9 (ENSMMMG00000012106)	SYNJ2 (ENSMMMG00000010186)	SERAC1 (ENSMMMG00000010093)	GTF2H5 (ENSMMMG00000010071)	ENSMMMG00000010057	TULP4 (ENSMMMG00000010029)	TMEM181 (ENSMMMG00000009973)	ENSMMMG00000009958	SYTL3 (ENSMMMG00000009912)	EZR (ENSMMMG00000009906)	RSPH3 (ENSMMMG00000009878)	TAGAP (ENSMMMG00000009875)	ENSMMMG00000009777	SOD2 (ENSMMMG00000009744) #20	WTAP (ENSMMMG00000009724) #21	ACAT2 (ENSMMMG00000009712) #22	TCP1 (ENSMMMG00000009649) #24	MRPL18 (ENSMMMG00000009635) #25	PNLDC1 (ENSMMMG00000009617) #26	ENSMMMG00000009610 #27	MAS1 (ENSMMMG00000009593) #27	IGF2R (ENSMMMG00000009520) #29	SLC22A1 (ENSMMMG00000009498) #30	SLC22A2 (ENSMMMG00000009474) #31	SLC22A3 (ENSMMMG00000009457) #32	ENSMMMG00000009428 #33	MAP3K4 (ENSMMMG00000009318) #34	AGPAT4 (ENSMMMG00000009306) #35	ENSMMMG00000009285	PRKN (ENSMMMG00000009240) #36	PACRG (ENSMMMG00000009213) #37
Eurasian red squirrel	MODERN SPECIES	16	SERAC1 (ENSSVLG00005017957)	ENSSVLG00005017883	GTF2H5 (ENSSVLG00005017847)	TULP4 (ENSSVLG00005017496)	TMEM181 (ENSSVLG00005017253)	DYNLT1 (ENSSVLG00005017209)	ENSSVLG00005017151	SYTL3 (ENSSVLG00005016826)	EZR (ENSSVLG00005016672)	RSPH3 (ENSSVLG00005016457)	TAGAP (ENSSVLG00005016286)	FNDC1 (ENSSVLG00005015913)	ENSSVLG00005015820	ENSSVLG00005015666 #20	ENSSVLG00005015534 #21	ACAT2 (ENSSVLG00005015487) #22	ENSSVLG00005015119 #24	ENSSVLG00005015024	MRPL18 (ENSSVLG00005014946) #25	ENSSVLG00005014568 #26	MAS1 (ENSSVLG00005014545) #27	ENSSVLG00005014490	IGF2R (ENSSVLG00005013999) #29	SLC22A1 (ENSSVLG00005013724) #30	SLC22A2 (ENSSVLG00005013453) #31	SLC22A3 (ENSSVLG00005013302) #32	ENSSVLG00005013240 #33	ENSSVLG00005013165 #33	ENSSVLG00005013042 #33	MAP3K4 (ENSSVLG00005011972) #34	AGPAT4 (ENSSVLG00005011803) #35
Hystricomorpha	ANCESTRAL SPECIES	53														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Naked mole-rat female	MODERN SPECIES		IL17A (ENSHGLG00000014659)	IL17F (ENSHGLG00000017633)	MCM3 (ENSHGLG00000016531)	PAQR8 (ENSHGLG00000010601)	EFHC1 (ENSHGLG00000009785)	ENSHGLG00000009261	ENSHGLG00000047464	ENSHGLG00000035426	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000043320	ENSHGLG00000007131	ENSHGLG00000048454	ENSHGLG00000016518 #20	WTAP (ENSHGLG00000007879) #21	ENSHGLG00000033037	ACAT2 (ENSHGLG00000006902) #22	ENSHGLG00000034564 #24	ENSHGLG00000004341	ENSHGLG00000003723	TCP1 (ENSHGLG00000007866) #24	ENSHGLG00000007214 #25	PNLDC1 (ENSHGLG00000006889) #26	ENSHGLG00000035250	MAS1 (ENSHGLG00000019988) #27	ENSHGLG00000039226	Igf2r (ENSHGLG00000003728) #29	SLC22A1 (ENSHGLG00000017500) #30	ENSHGLG00000014427	ENSHGLG00000017482 #31	ENSHGLG00000034005	ENSHGLG00000050994
Hystricomorpha_a	ANCESTRAL SPECIES	30														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Guinea pig	MODERN SPECIES	60													ENSCPOG00000040324	SOD2 (ENSCPOG00000036439) #20	WTAP (ENSCPOG00000001669) #21	ACAT2 (ENSCPOG00000001672) #22	TCP1 (ENSCPOG00000001676) #24	MRPL18 (ENSCPOG00000040103) #25	PNLDC1 (ENSCPOG00000019565) #26	MAS1 (ENSCPOG00000000027) #27	IGF2R (ENSCPOG00000013207) #29	SLC22A2 (ENSCPOG00000001527) #31	SLC22A3 (ENSCPOG00000010127) #32	ENSCPOG00000011605 #33	MAP3K4 (ENSCPOG00000013392) #34	AGPAT4 (ENSCPOG00000006135) #35	PRKN (ENSCPOG00000006136) #36	PACRG (ENSCPOG00000013410) #37	QKI (ENSCPOG00000003424)	C6orf118 (ENSCPOG00000008774)	PDE10A (ENSCPOG00000008783)
Hystricomorpha_b	ANCESTRAL SPECIES	29														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00940000161879	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Long-tailed chinchilla	MODERN SPECIES	146														SOD2 (ENSCLAG00000010198) #20	WTAP (ENSCLAG00000009722) #21	ACAT2 (ENSCLAG00000009441) #22	ENSCLAG00000009354 #24	ENSCLAG00000012133	MRPL18 (ENSCLAG00000012045) #25	PNLDC1 (ENSCLAG00000003228) #26	MAS1 (ENSCLAG00000017515) #27	IGF2R (ENSCLAG00000002642) #29	SLC22A1 (ENSCLAG00000002646) #30	SLC22A2 (ENSCLAG00000002562) #31	SLC22A3 (ENSCLAG00000002492) #32	ENSCLAG00000002399 #33	MAP3K4 (ENSCLAG00000008769) #34	AGPAT4 (ENSCLAG00000008421) #35	PRKN (ENSCLAG00000008284) #36	PACRG (ENSCLAG00000008105) #37	ENSCLAG00000006238
Degu	MODERN SPECIES	153	FOXK2 (ENSODEG00000008321)	WDR45B (ENSODEG00000007809)	RAB40B (ENSODEG00000007441)	ENSODEG00000020021	FN3KRP (ENSODEG00000012467)	ENSODEG00000009328	ENSODEG00000019653	ZNF750 (ENSODEG00000008866)	TBCD (ENSODEG00000009094)	B3GNTL1 (ENSODEG00000011917)	METRNL (ENSODEG00000008002)	ENSODEG00000019438	SOD2 (ENSODEG00000007052) #20	ENSODEG00000019351	ENSODEG00000008023 ##21	ACAT2 (ENSODEG00000008431) #22	ENSODEG00000008372 #24	ENSODEG00000007990 #24	ENSODEG00000007318 #25	ENSODEG00000019385	PNLDC1 (ENSODEG00000008047) #26	ENSODEG00000019381	MAS1 (ENSODEG00000019418) #27	ENSODEG00000019599	IGF2R (ENSODEG00000007106) #29	ENSODEG00000019312	SLC22A1 (ENSODEG00000007862) #30	SLC22A2 (ENSODEG00000007315) #31	ENSODEG00000007010	ENSODEG00000006583	SLC22A3 (ENSODEG00000006460) #32
Lagomorpha	ANCESTRAL SPECIES	64	ENSGT00390000008642	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00940000156543
Pika	MODERN SPECIES	1991															WTAP (ENSOPRG00000003737) #21	ACAT2 (ENSOPRG00000003753) #22	TCP1 (ENSOPRG00000003775) #24	MRPL18 (ENSOPRG00000003798) #25	PNLDC1 (ENSOPRG00000003813) #26
Rabbit	MODERN SPECIES	3	GTF2H5 (ENSOCUG00000025009)	ENSOCUG00000032034	TULP4 (ENSOCUG00000001444)	ENSOCUG00000026411	TMEM181 (ENSOCUG00000012985)	DYNLT1 (ENSOCUG00000013012)	SYTL3 (ENSOCUG00000003823)	EZR (ENSOCUG00000003829)	RSPH3 (ENSOCUG00000007210)	TAGAP (ENSOCUG00000000631)	ENSOCUG00000037278	FNDC1 (ENSOCUG00000015039)	ENSOCUG00000024780	WTAP (ENSOCUG00000035527) #21	TCP1 (ENSOCUG00000013847) #24	ACAT2 (ENSOCUG00000013836) #22	MRPL18 (ENSOCUG00000013858) #25	PNLDC1 (ENSOCUG00000013867) #26	MGRA (ENSOCUG00000001493) #27	IGF2R (ENSOCUG00000008785) #29	SLC22A1 (ENSOCUG00000002539) #30	SLC22A2 (ENSOCUG00000002542) #31	SLC22A3 (ENSOCUG00000004222) #32	ENSOCUG00000001766 #33	MAP3K4 (ENSOCUG00000017154) #34	ENSOCUG00000032142	ENSOCUG00000033664 #35	ENSOCUG00000035966 #36	ENSOCUG00000025750 #36	ENSOCUG00000031144	PACRG (ENSOCUG00000013289) #37
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	5661																ENSTBEG00000012375 #22
Tree shrew	MODERN SPECIES	869																ENSTBEG00000008352 #22	TCP1 (ENSTBEG00000008585) #24	PNLDC1 (ENSTBEG00000009131) #26
Primates	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.g.a	ENSGT00940000157993.h	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mouse lemur	MODERN SPECIES	28	SNX9 (ENSMICG00000008656)	SYNJ2 (ENSMICG00000015804)	SERAC1 (ENSMICG00000015831)	GTF2H5 (ENSMICG00000046368)	TULP4 (ENSMICG00000009203)	TMEM181 (ENSMICG00000009469)	ENSMICG00000009483	SYTL3 (ENSMICG00000009493)	ENSMICG00000009498	RSPH3 (ENSMICG00000047073)	TAGAP (ENSMICG00000031485)	FNDC1 (ENSMICG00000010483)	SOD2 (ENSMICG00000035793) #20	WTAP (ENSMICG00000033919) #21	ENSMICG00000042830	ACAT2 (ENSMICG00000007988) #22	ENSMICG00000007998 #24	MRPL18 (ENSMICG00000044845) #25	PNLDC1 (ENSMICG00000008021) #26	IGF2R (ENSMICG00000007582) #29	SLC22A1 (ENSMICG00000007625) #30	SLC22A2 (ENSMICG00000007636) #31	SLC22A3 (ENSMICG00000007647) #32	ENSMICG00000034395 #33	MAP3K4 (ENSMICG00000007663) #34	AGPAT4 (ENSMICG00000009184) #35	PRKN (ENSMICG00000009200) #36	PACRG (ENSMICG00000009209) #37	QKI (ENSMICG00000009220)	C6orf118 (ENSMICG00000046277)	PDE10A (ENSMICG00000008121)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.g.a	ENSGT00940000157993.h	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Greater bamboo lemur	MODERN SPECIES	990				TULP4 (ENSPSMG00000019869)	ENSPSMG00000019843	TMEM181 (ENSPSMG00000019837)	DYNLT1 (ENSPSMG00000019821)	SYTL3 (ENSPSMG00000019808)	EZR (ENSPSMG00000019645)	RSPH3 (ENSPSMG00000019513)	ENSPSMG00000019495	ENSPSMG00000019487	FNDC1 (ENSPSMG00000019475)	SOD2 (ENSPSMG00000019437) #20	WTAP (ENSPSMG00000019381) #21	ACAT2 (ENSPSMG00000019357) #22	TCP1 (ENSPSMG00000019332) #24	MRPL18 (ENSPSMG00000019284) #25	PNLDC1 (ENSPSMG00000019276) #26	MAS1 (ENSPSMG00000019268) #27	ENSPSMG00000019267	IGF2R (ENSPSMG00000019256) #29	ENSPSMG00000019218 #31	ENSPSMG00000019203 #30	ENSPSMG00000019196 #30	SLC22A3 (ENSPSMG00000019195) #32	ENSPSMG00000019187 #33	ENSPSMG00000019164	MAP3K4 (ENSPSMG00000018873) #34	AGPAT4 (ENSPSMG00000018610) #35	ENSPSMG00000018587 #36
Coquerels sifaka	MODERN SPECIES	358	SNX9 (ENSPCOG00000027841)	SYNJ2 (ENSPCOG00000026910)	SERAC1 (ENSPCOG00000014108)	ENSPCOG00000027272	TULP4 (ENSPCOG00000015899)	ENSPCOG00000028064	TMEM181 (ENSPCOG00000018974)	DYNLT1 (ENSPCOG00000015219)	SYTL3 (ENSPCOG00000016619)	EZR (ENSPCOG00000002371)	RSPH3 (ENSPCOG00000007389)	ENSPCOG00000019827	FNDC1 (ENSPCOG00000003224)	SOD2 (ENSPCOG00000014692) #20	WTAP (ENSPCOG00000014167) #21	ACAT2 (ENSPCOG00000011643) #22	ENSPCOG00000017935 #24	MRPL18 (ENSPCOG00000025100) #25	PNLDC1 (ENSPCOG00000025722) #26	IGF2R (ENSPCOG00000018469) #29	SLC22A1 (ENSPCOG00000021330) #30	SLC22A2 (ENSPCOG00000023545) #31	SLC22A3 (ENSPCOG00000017815) #32	ENSPCOG00000026308 #33	MAP3K4 (ENSPCOG00000015288) #34	AGPAT4 (ENSPCOG00000013535) #35	PRKN (ENSPCOG00000019988) #36	PACRG (ENSPCOG00000013888) #37	QKI (ENSPCOG00000007664)	ENSPCOG00000022276
Bushbaby	MODERN SPECIES	171	SNX9 (ENSOGAG00000000487)	SYNJ2 (ENSOGAG00000000488)	SERAC1 (ENSOGAG00000000490)	GTF2H5 (ENSOGAG00000032151)	TULP4 (ENSOGAG00000000492)	TMEM181 (ENSOGAG00000000493)	DYNLT1 (ENSOGAG00000000494)	SYTL3 (ENSOGAG00000000495)	ENSOGAG00000000499	RSPH3 (ENSOGAG00000033207)	ENSOGAG00000010321	TAGAP (ENSOGAG00000012767)	FNDC1 (ENSOGAG00000003812)	SOD2 (ENSOGAG00000017100) #20	ENSOGAG00000007311 #21	ACAT2 (ENSOGAG00000007315) #22	TCP1 (ENSOGAG00000007320) #24	MRPL18 (ENSOGAG00000007327) #25	PNLDC1 (ENSOGAG00000007331) #26	ENSOGAG00000031607 #27	ENSOGAG00000031154 #21	MAS1 (ENSOGAG00000005268) #27	IGF2R (ENSOGAG00000005270) #29	SLC22A1 (ENSOGAG00000005276) #30	ENSOGAG00000005280	SLC22A2 (ENSOGAG00000005281) #31	SLC22A3 (ENSOGAG00000004550) #32	ENSOGAG00000030352 #33	MAP3K4 (ENSOGAG00000004556) #34	AGPAT4 (ENSOGAG00000004567) #35	PRKN (ENSOGAG00000010979) #36
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Tarsier	MODERN SPECIES	7263														SOD2 (ENSTSYG00000000457) #20	WTAP (ENSTSYG00000001946) #21	ACAT2 (ENSTSYG00000003819) #22	TCP1 (ENSTSYG00000005513) #24	MRPL18 (ENSTSYG00000005598) #25	ENSTSYG00000030745	PNLDC1 (ENSTSYG00000005606) #26	IGF2R (ENSTSYG00000005881) #29
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208.p #33	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Hominidae	ANCESTRAL SPECIES	5	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208.p #33	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208.p #33	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208.p #33	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Pan	ANCESTRAL SPECIES	5	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000001376.ab.b.a.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017606.a.a.i.a.b.a.a	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878.`b.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000154629.B.db.b.a	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208.p #33	ENSGT00940000157183.a.a	ENSGT00940000155208.o.a #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Chimpanzee	MODERN SPECIES	19	GTF2H5 (ENSPTRG00000051853)	ENSPTRG00000048100	TULP4 (ENSPTRG00000018743)	TMEM181 (ENSPTRG00000018745)	DYNLT1 (ENSPTRG00000018746)	SYTL3 (ENSPTRG00000018747)	EZR (ENSPTRG00000018748)	RSPH3 (ENSPTRG00000018751)	TAGAP (ENSPTRG00000018752)	FNDC1 (ENSPTRG00000018754)	ENSPTRG00000050636	ENSPTRG00000045605	SOD2 (ENSPTRG00000018757) #20	ENSPTRG00000046132	WTAP (ENSPTRG00000018758) #21	ACAT2 (ENSPTRG00000018759) #22	TCP1 (ENSPTRG00000018760) #24	MRPL18 (ENSPTRG00000018761) #25	PNLDC1 (ENSPTRG00000018762) #26	MAS1 (ENSPTRG00000018763) #27	IGF2R (ENSPTRG00000018764) #29	ENSPTRG00000051861	SLC22A1 (ENSPTRG00000018767) #30	SLC22A2 (ENSPTRG00000018768) #31	SLC22A3 (ENSPTRG00000018769) #32	LPA (ENSPTRG00000018770)	PLG (ENSPTRG00000018774) #33	MAP3K4 (ENSPTRG00000046415) #34	ENSPTRG00000048118	AGPAT4 (ENSPTRG00000018779) #35	PRKN (ENSPTRG00000018781) #36
Bonobo	MODERN SPECIES	19	ENSPPAG00000011428	TULP4 (ENSPPAG00000038644)	ENSPPAG00000008988	TMEM181 (ENSPPAG00000028271)	ENSPPAG00000042250	SYTL3 (ENSPPAG00000043773)	EZR (ENSPPAG00000036860)	ENSPPAG00000000806	ENSPPAG00000013502	TAGAP (ENSPPAG00000040185)	FNDC1 (ENSPPAG00000042837)	ENSPPAG00000024927	SOD2 (ENSPPAG00000038347) #20	ENSPPAG00000028640	WTAP (ENSPPAG00000028625) #21	ACAT2 (ENSPPAG00000043658) #22	TCP1 (ENSPPAG00000030713) #24	MRPL18 (ENSPPAG00000001652) #25	PNLDC1 (ENSPPAG00000026651) #26	MAS1 (ENSPPAG00000003542) #27	IGF2R (ENSPPAG00000022058) #29	ENSPPAG00000029247	SLC22A1 (ENSPPAG00000017979) #30	SLC22A2 (ENSPPAG00000012601) #31	SLC22A3 (ENSPPAG00000009760) #32	ENSPPAG00000026664 #33	ENSPPAG00000034032	PLG (ENSPPAG00000042434) #33	MAP3K4 (ENSPPAG00000037745) #34	ENSPPAG00000006234	AGPAT4 (ENSPPAG00000041903) #35
Human	MODERN SPECIES	18	ZDHHC14 (ENSG00000175048)	SNX9 (ENSG00000130340)	SYNJ2 (ENSG00000078269)	SERAC1 (ENSG00000122335)	GTF2H5 (ENSG00000272047)	TULP4 (ENSG00000130338)	TMEM181 (ENSG00000146433)	DYNLT1 (ENSG00000146425)	SYTL3 (ENSG00000164674)	EZR (ENSG00000092820)	RSPH3 (ENSG00000130363)	TAGAP (ENSG00000164691)	FNDC1 (ENSG00000164694)	SOD2 (ENSG00000291237) #20	WTAP (ENSG00000146457) #21	ACAT2 (ENSG00000120437) #22	TCP1 (ENSG00000120438) #24	MRPL18 (ENSG00000112110) #25	PNLDC1 (ENSG00000146453) #26	MAS1 (ENSG00000130368) #27	IGF2R (ENSG00000197081) #29	SLC22A1 (ENSG00000175003) #30	SLC22A2 (ENSG00000112499) #31	SLC22A3 (ENSG00000146477) #32	LPA (ENSG00000198670)	PLG (ENSG00000122194) #33	MAP3K4 (ENSG00000085511) #34	AGPAT4 (ENSG00000026652) #35	PRKN (ENSG00000185345) #36	PACRG (ENSG00000112530) #37	QKI (ENSG00000112531)
Gorilla	MODERN SPECIES	19	SNX9 (ENSGGOG00000003616)	SYNJ2 (ENSGGOG00000012210)	SERAC1 (ENSGGOG00000002450)	GTF2H5 (ENSGGOG00000025095)	TULP4 (ENSGGOG00000012077)	ENSGGOG00000042759	ENSGGOG00000000103	DYNLT1 (ENSGGOG00000009979)	SYTL3 (ENSGGOG00000013290)	EZR (ENSGGOG00000013301)	ENSGGOG00000003870	TAGAP (ENSGGOG00000004612)	FNDC1 (ENSGGOG00000014902)	SOD2 (ENSGGOG00000008212) #20	WTAP (ENSGGOG00000006039) #21	ACAT2 (ENSGGOG00000014051) #22	TCP1 (ENSGGOG00000014063) #24	MRPL18 (ENSGGOG00000014075) #25	PNLDC1 (ENSGGOG00000014077) #26	MAS1 (ENSGGOG00000010485) #27	IGF2R (ENSGGOG00000001658) #29	ENSGGOG00000022414	SLC22A1 (ENSGGOG00000001671) #30	SLC22A2 (ENSGGOG00000013636) #31	SLC22A3 (ENSGGOG00000001951) #32	LPA (ENSGGOG00000016065)	PLG (ENSGGOG00000010300) #33	MAP3K4 (ENSGGOG00000008360) #34	ENSGGOG00000023810	PRKN (ENSGGOG00000041961) #36	PACRG (ENSGGOG00000014095) #37
Orangutan	MODERN SPECIES	19	ENSPPYG00000035657	SYNJ2 (ENSPPYG00000017130)	SERAC1 (ENSPPYG00000017131)	GTF2H5 (ENSPPYG00000017132)	TULP4 (ENSPPYG00000017133)	ENSPPYG00000017134	DYNLT1 (ENSPPYG00000033573)	SYTL3 (ENSPPYG00000017136)	EZR (ENSPPYG00000017137)	ENSPPYG00000017138	ENSPPYG00000017140	TAGAP (ENSPPYG00000017141)	FNDC1 (ENSPPYG00000017142)	SOD2 (ENSPPYG00000034460) #20	WTAP (ENSPPYG00000017144) #21	ACAT2 (ENSPPYG00000017145) #22	TCP1 (ENSPPYG00000017146) #24	ENSPPYG00000017147 #25	PNLDC1 (ENSPPYG00000017148) #26	MAS1 (ENSPPYG00000017261) #27	IGF2R (ENSPPYG00000017149) #29	SLC22A1 (ENSPPYG00000017150) #30	SLC22A2 (ENSPPYG00000017151) #31	SLC22A3 (ENSPPYG00000017152) #32	ENSPPYG00000029841 #33	ENSPPYG00000039278	PLG (ENSPPYG00000017153) #33	MAP3K4 (ENSPPYG00000017155) #34	ENSPPYG00000038768	AGPAT4 (ENSPPYG00000017156) #35	PRKN (ENSPPYG00000017158) #36
Gibbon	MODERN SPECIES	18	SERAC1 (ENSNLEG00000010806)	GTF2H5 (ENSNLEG00000033388)	ENSNLEG00000010844	TULP4 (ENSNLEG00000010847)	ENSNLEG00000034975	ENSNLEG00000010915	DYNLT1 (ENSNLEG00000010926)	SYTL3 (ENSNLEG00000010927)	EZR (ENSNLEG00000010950)	ENSNLEG00000027909	ENSNLEG00000010982	TAGAP (ENSNLEG00000010995)	FNDC1 (ENSNLEG00000011059)	SOD2 (ENSNLEG00000011061) #20	WTAP (ENSNLEG00000028233) #21	ACAT2 (ENSNLEG00000011115) #22	TCP1 (ENSNLEG00000011178) #24	MRPL18 (ENSNLEG00000011269) #25	PNLDC1 (ENSNLEG00000011282) #26	IGF2R (ENSNLEG00000011313) #29	ENSNLEG00000035869	ENSNLEG00000035654 #30	SLC22A2 (ENSNLEG00000011367) #31	ENSNLEG00000011373 #32	ENSNLEG00000011380 #33	MAP3K4 (ENSNLEG00000011428) #34	ENSNLEG00000011464 #35	PRKN (ENSNLEG00000011473) #36	PACRG (ENSNLEG00000011474) #37	ENSNLEG00000011478	C6orf118 (ENSNLEG00000011493)
Cercopithecidae	DUPLICATION
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT00910000147813	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Rhinopithecus	ANCESTRAL SPECIES	446														ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32
Golden snub-nosed monkey	MODERN SPECIES	1391														SOD2 (ENSRROG00000028133) #20	WTAP (ENSRROG00000028905) #21	ENSRROG00000030788 #22	ENSRROG00000045492 #24	MRPL18 (ENSRROG00000030298) #25	PNLDC1 (ENSRROG00000043919) #26	MAS1 (ENSRROG00000026378) #27	ENSRROG00000026110	IGF2R (ENSRROG00000036542) #29	SLC22A1 (ENSRROG00000034563) #30	SLC22A2 (ENSRROG00000038341) #31	SLC22A3 (ENSRROG00000035773) #32
Black snub-nosed monkey	MODERN SPECIES	1642													ENSRBIG00000036754	SOD2 (ENSRBIG00000038398) #20	WTAP (ENSRBIG00000028069) #21	ENSRBIG00000038582 #22	ENSRBIG00000038225 #24	ENSRBIG00000038575 #25	PNLDC1 (ENSRBIG00000033806) #26	MAS1 (ENSRBIG00000021000) #27	ENSRBIG00000019925	IGF2R (ENSRBIG00000041184) #29	SLC22A1 (ENSRBIG00000036475) #30	SLC22A2 (ENSRBIG00000031107) #31	SLC22A3 (ENSRBIG00000033139) #32
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.d.e.b	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000155616.c.a.f	ENSGT00940000154531.y.a	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #33	ENSGT00940000157183.a.a.b	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00950000182895.a.a.a.a.b.k	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.ab #21	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00910000148333	ENSGT00950000182836.b.b.b.b #35
Olive baboon	MODERN SPECIES	16	AFG1L (ENSPANG00000007612)	SNX3 (ENSPANG00000045017)	ENSPANG00000017995	NR2E1 (ENSPANG00000016092)	OSTM1 (ENSPANG00000024443)	ENSPANG00000004075	ENSPANG00000044542	RSPH3 (ENSPANG00000015890)	TAGAP (ENSPANG00000006087)	ENSPANG00000043396	FNDC1 (ENSPANG00000024066)	ENSPANG00000046898	ENSPANG00000043348	SOD2 (ENSPANG00000006178) #20	WTAP (ENSPANG00000018386) #21	ACAT2 (ENSPANG00000006086) #22	ENSPANG00000011086 #24	MRPL18 (ENSPANG00000023667) #25	PNLDC1 (ENSPANG00000022009) #26	MAS1 (ENSPANG00000024549) #27	IGF2R (ENSPANG00000018547) #29	SLC22A1 (ENSPANG00000012323) #30	SLC22A2 (ENSPANG00000008238) #31	SLC22A3 (ENSPANG00000025907) #32	ENSPANG00000033663	ENSPANG00000048497	ENSPANG00000042063	ENSPANG00000038033	PLG (ENSPANG00000007072) #33	MAP3K4 (ENSPANG00000013261) #34	ENSPANG00000050992
Cercopithecinae_d	ANCESTRAL SPECIES	70	ENSGT00940000163170	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034.`c #36
Sooty mangabey	MODERN SPECIES	590	SESN1 (ENSCATG00000025577)	ARMC2 (ENSCATG00000039753)	ENSCATG00000039457	ENSCATG00000039123	AFG1L (ENSCATG00000009873)	SNX3 (ENSCATG00000029122)	NR2E1 (ENSCATG00000040877)	OSTM1 (ENSCATG00000039725)	ENSCATG00000038882	RSPH3 (ENSCATG00000037174)	TAGAP (ENSCATG00000031180)	FNDC1 (ENSCATG00000041959)	SOD2 (ENSCATG00000041741) #20	ENSCATG00000018577	ENSCATG00000032080 ##21	ENSCATG00000029973 #22	ENSCATG00000040449 #24	MRPL18 (ENSCATG00000039405) #25	PNLDC1 (ENSCATG00000033196) #26	MAS1 (ENSCATG00000018354) #27	ENSCATG00000031955	IGF2R (ENSCATG00000040245) #29	SLC22A1 (ENSCATG00000037974) #30	SLC22A2 (ENSCATG00000035775) #31	SLC22A3 (ENSCATG00000037522) #32	ENSCATG00000036874
Drill	MODERN SPECIES	546	ENSMLEG00000038718	CEP57L1 (ENSMLEG00000042256)	SESN1 (ENSMLEG00000023202)	ARMC2 (ENSMLEG00000028725)	ENSMLEG00000035215	AFG1L (ENSMLEG00000042976)	SNX3 (ENSMLEG00000009064)	NR2E1 (ENSMLEG00000042106)	OSTM1 (ENSMLEG00000042119)	ENSMLEG00000034288	RSPH3 (ENSMLEG00000040694)	TAGAP (ENSMLEG00000019766)	FNDC1 (ENSMLEG00000036645)	SOD2 (ENSMLEG00000031266) #20	ENSMLEG00000036194 #21	ACAT2 (ENSMLEG00000030278) #22	ENSMLEG00000010006 #24	MRPL18 (ENSMLEG00000009952) #25	PNLDC1 (ENSMLEG00000044059) #26	MAS1 (ENSMLEG00000021239) #27	IGF2R (ENSMLEG00000030426) #29	SLC22A1 (ENSMLEG00000042980) #30	SLC22A2 (ENSMLEG00000016886) #31	SLC22A3 (ENSMLEG00000038788) #32	ENSMLEG00000029985	ENSMLEG00000028757	PLG (ENSMLEG00000043200) #33	MAP3K4 (ENSMLEG00000043276) #34
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000000663	ENSGT00390000005306.v	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153052.c.b.b.b.g.a.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00910000148724	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394.i.a #25	ENSGT00940000153167.A.a #26	ENSGT00940000154629.B.db.b.a	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Pig-tailed macaque	MODERN SPECIES	186	ARMC2 (ENSMNEG00000037523)	ENSMNEG00000041536	ENSMNEG00000040158	AFG1L (ENSMNEG00000044043)	SNX3 (ENSMNEG00000027766)	NR2E1 (ENSMNEG00000034662)	OSTM1 (ENSMNEG00000036298)	ENSMNEG00000041823	RSPH3 (ENSMNEG00000038143)	TAGAP (ENSMNEG00000029744)	ENSMNEG00000021558	FNDC1 (ENSMNEG00000043137)	SOD2 (ENSMNEG00000031749) #20	ENSMNEG00000027147	ENSMNEG00000034307 #21	ENSMNEG00000032924 #22	ENSMNEG00000041282 #24	ENSMNEG00000045344 #25	PNLDC1 (ENSMNEG00000034271) #26	ENSMNEG00000029146	IGF2R (ENSMNEG00000033736) #29	SLC22A1 (ENSMNEG00000019486) #30	SLC22A2 (ENSMNEG00000034324) #31	SLC22A3 (ENSMNEG00000000785) #32	ENSMNEG00000034918
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000159826	ENSGT00390000013227.a.a	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00390000004172	ENSGT00940000157993	ENSGT00910000148724	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00940000163505.a.b.a.b	ENSGT00390000013931.a.b.b.`b.a #21	ENSGT01030000234626.B.w.a #22	ENSGT00550000074878.`b.a.a.a #24	ENSGT00390000006394.i.a #25	ENSGT00940000153167.A.a #26	ENSGT00390000006707.w.a.a.b	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000157183.a.a.b	ENSGT00940000157183.a.a.a	ENSGT00910000148333	ENSGT00940000155208 #33
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000060415	AFG1L (ENSMFAG00000041493)	ENSMFAG00000065667	SNX3 (ENSMFAG00000039300)	NR2E1 (ENSMFAG00000001910)	OSTM1 (ENSMFAG00000002698)	RSPH3 (ENSMFAG00000041726)	TAGAP (ENSMFAG00000032965)	ENSMFAG00000029234	FNDC1 (ENSMFAG00000000932)	ENSMFAG00000059093	SOD2 (ENSMFAG00000046278) #20	ENSMFAG00000053733	WTAP (ENSMFAG00000035453) #21	ENSMFAG00000052244	ENSMFAG00000035657 #22	ENSMFAG00000003456 #24	ENSMFAG00000043173 #25	ENSMFAG00000065624	PNLDC1 (ENSMFAG00000041296) #26	ENSMFAG00000051722	ENSMFAG00000062218	MAS1 (ENSMFAG00000004332) #27	IGF2R (ENSMFAG00000034342) #29	SLC22A1 (ENSMFAG00000033700) #30	SLC22A2 (ENSMFAG00000031849) #31	SLC22A3 (ENSMFAG00000002893) #32	ENSMFAG00000064690	ENSMFAG00000063217	ENSMFAG00000051812 #33	PLG (ENSMFAG00000050264) #33
Rhesus	MODERN SPECIES	14	FOXO3 (ENSMMUG00000020369)	AFG1L (ENSMMUG00000020367)	SNX3 (ENSMMUG00000020366)	NR2E1 (ENSMMUG00000023767)	OSTM1 (ENSMMUG00000022247)	ENSMMUG00000061610	ENSMMUG00000064227	ENSMMUG00000057516	RSPH3 (ENSMMUG00000020011)	TAGAP (ENSMMUG00000011994)	FNDC1 (ENSMMUG00000000500)	SOD2 (ENSMMUG00000050418) #20	ENSMMUG00000056261	ENSMMUG00000057544	WTAP (ENSMMUG00000012837) #21	ENSMMUG00000012843 #22	TCP1 (ENSMMUG00000012846) #24	MRPL18 (ENSMMUG00000063964) #25	ENSMMUG00000052876	PNLDC1 (ENSMMUG00000004181) #26	MAS1 (ENSMMUG00000016217) #27	IGF2R (ENSMMUG00000015658) #29	SLC22A1 (ENSMMUG00000015662) #30	SLC22A2 (ENSMMUG00000005715) #31	SLC22A3 (ENSMMUG00000005717) #32	ENSMMUG00000016201	PLG (ENSMMUG00000016945) #33	ENSMMUG00000057619	MAP3K4 (ENSMMUG00000006143) #34	AGPAT4 (ENSMMUG00000006147) #35	PRKN (ENSMMUG00000020410) #36
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Macaca	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Pig-tailed macaque	MODERN SPECIES	544	OPRPN (ENSMNEG00000028733)	ENSMNEG00000039328	ENSMNEG00000034690	CABS1 (ENSMNEG00000017822)	CSN3 (ENSMNEG00000031858)	FDCSP (ENSMNEG00000033009)	ODAM (ENSMNEG00000038668)	ENSMNEG00000037247	ENSMNEG00000042173	ENSMNEG00000022627	CSN2 (ENSMNEG00000029544)	CSN1S1 (ENSMNEG00000035277)	SULT1E1 (ENSMNEG00000033099)	SULT1B1 (ENSMNEG00000041803)	UGT2A1 (ENSMNEG00000034176)	ENSMNEG00000041656 #22	ENSMNEG00000038759	ENSMNEG00000044727	UGT2A3 (ENSMNEG00000038674)	ENSMNEG00000036455
Macaca_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.w.b #22
Crab-eating macaque	MODERN SPECIES	15	MUC7 (ENSMFAG00000054048)	OPRPN (ENSMFAG00000034306)	ENSMFAG00000037153	CABS1 (ENSMFAG00000053305)	CSN3 (ENSMFAG00000032472)	FDCSP (ENSMFAG00000057683)	ODAM (ENSMFAG00000044753)	PRR27 (ENSMFAG00000045284)	ENSMFAG00000003233	ENSMFAG00000017051	ENSMFAG00000030084	CSN2 (ENSMFAG00000040612)	CSN1S1 (ENSMFAG00000034216)	SULT1E1 (ENSMFAG00000046267)	SULT1B1 (ENSMFAG00000042376)	ENSMFAG00000003287 #22	UGT2A1 (ENSMFAG00000001202)	ENSMFAG00000000958	ENSMFAG00000001869	UGT2B7 (ENSMFAG00000050937)	ENSMFAG00000056775	ENSMFAG00000049858	TMPRSS11E (ENSMFAG00000044534)	YTHDC1 (ENSMFAG00000031927)	TMPRSS11B (ENSMFAG00000025901)	TMPRSS11F (ENSMFAG00000001358)	TMPRSS11A (ENSMFAG00000039434)	TMPRSS11D (ENSMFAG00000035772)	GNRHR (ENSMFAG00000034593)	UBA6 (ENSMFAG00000001344)	STAP1 (ENSMFAG00000000570)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719
Cercopithecinae_d	ANCESTRAL SPECIES	38	ENSGT00730000111663	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.w.b #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b
Sooty mangabey	MODERN SPECIES	243	MUC7 (ENSCATG00000040053)	OPRPN (ENSCATG00000034709)	ENSCATG00000032484	SMR3A (ENSCATG00000029579)	CSN3 (ENSCATG00000027983)	FDCSP (ENSCATG00000036774)	ODAM (ENSCATG00000035630)	PRR27 (ENSCATG00000029123)	ENSCATG00000042470	ENSCATG00000040378	STATH (ENSCATG00000035840)	CSN2 (ENSCATG00000033009)	CSN1S1 (ENSCATG00000033444)	SULT1E1 (ENSCATG00000041914)	SULT1B1 (ENSCATG00000034869)	ENSCATG00000041603 #22	UGT2A1 (ENSCATG00000029410)	ENSCATG00000041561	ENSCATG00000032258	ENSCATG00000002647	UGT2A3 (ENSCATG00000038824)	ENSCATG00000003758
Vervet Monkey	MODERN SPECIES	4	SNX9 (ENSCSAG00000013174)	SYNJ2 (ENSCSAG00000013130)	SERAC1 (ENSCSAG00000013012)	GTF2H5 (ENSCSAG00000012998)	TULP4 (ENSCSAG00000012991)	TMEM181 (ENSCSAG00000012985)	ENSCSAG00000012959	DYNLT1 (ENSCSAG00000012907)	SYTL3 (ENSCSAG00000012865)	EZR (ENSCSAG00000012781)	RSPH3 (ENSCSAG00000012703)	TAGAP (ENSCSAG00000012667)	FNDC1 (ENSCSAG00000012645)	SOD2 (ENSCSAG00000012601) #20	WTAP (ENSCSAG00000012594) #21	ENSCSAG00000012584 #22	TCP1 (ENSCSAG00000012567) #24	MRPL18 (ENSCSAG00000012516) #25	PNLDC1 (ENSCSAG00000012478) #26	ENSCSAG00000012433 #27	MAS1 (ENSCSAG00000012417) #27	IGF2R (ENSCSAG00000012403) #29	SLC22A1 (ENSCSAG00000012377) #30	SLC22A2 (ENSCSAG00000012370) #31	SLC22A3 (ENSCSAG00000012348) #32	LPA (ENSCSAG00000012297)	PLG (ENSCSAG00000012290) #33	MAP3K4 (ENSCSAG00000012282) #34	AGPAT4 (ENSCSAG00000012273) #35	ENSCSAG00000018983	PRKN (ENSCSAG00000012267) #36
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00730000111944	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00730000111944	ENSGT00970000194128	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Vervet Monkey	MODERN SPECIES	26	AMBN (ENSCSAG00000004873)	MUC7 (ENSCSAG00000004879)	OPRPN (ENSCSAG00000004881)	ENSCSAG00000004882	ENSCSAG00000004883	CABS1 (ENSCSAG00000000421)	CSN3 (ENSCSAG00000004887)	FDCSP (ENSCSAG00000004899)	ODAM (ENSCSAG00000004908)	PRR27 (ENSCSAG00000004913)	ENSCSAG00000004916	CSN2 (ENSCSAG00000004921)	CSN1S1 (ENSCSAG00000004930)	SULT1E1 (ENSCSAG00000004937)	SULT1B1 (ENSCSAG00000004940)	ENSCSAG00000000422 #22	UGT2A1 (ENSCSAG00000004944)	UGT2B4 (ENSCSAG00000004947)	DCUN1D4 (ENSCSAG00000004948)	LRRC66 (ENSCSAG00000004952)	SGCB (ENSCSAG00000004955)	SPATA18 (ENSCSAG00000004960)	USP46 (ENSCSAG00000004963)	ERVMER34-1 (ENSCSAG00000000423)	RASL11B (ENSCSAG00000004968)	SCFD2 (ENSCSAG00000004970)	ENSCSAG00000004975	LNX1 (ENSCSAG00000004979)	GSX2 (ENSCSAG00000004981)	PDGFRA (ENSCSAG00000004987)	KIT (ENSCSAG00000004992)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000158332.a.a.f.a	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a
Macaca	ANCESTRAL SPECIES	26	ENSGT00970000194128	ENSGT00980000198815	ENSGT00940000164646	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00530000063666.b.h.a.b	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00730000111944	ENSGT00970000194128	ENSGT00980000198815	ENSGT00390000015647	ENSGT00390000009184	ENSGT00390000015551	ENSGT00390000011100	ENSGT00530000064615	ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT01050000247329	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT00940000158332.a.b.d	ENSGT00940000158332.a.b.c	ENSGT00940000162432	ENSGT00940000158332.a.a.f.b	ENSGT00940000163930	ENSGT00940000161786	ENSGT00940000155803	ENSGT00940000163500	ENSGT00940000161680	ENSGT00940000161698	ENSGT00940000161719	ENSGT01050000244841.A.a.a	ENSGT00940000158826	ENSGT00530000063841.a
Rhesus	MODERN SPECIES	15	ENSMMUG00000061054	OPRPN (ENSMMUG00000002465)	ENSMMUG00000054206	SMR3A (ENSMMUG00000047859)	CABS1 (ENSMMUG00000006708)	ENSMMUG00000039866	CSN3 (ENSMMUG00000006031)	FDCSP (ENSMMUG00000062248)	ODAM (ENSMMUG00000006029)	PRR27 (ENSMMUG00000022269)	ENSMMUG00000048868	CSN2 (ENSMMUG00000004849)	CSN1S1 (ENSMMUG00000047324)	SULT1E1 (ENSMMUG00000004667)	SULT1B1 (ENSMMUG00000062115)	ENSMMUG00000030261 #22	UGT2A1 (ENSMMUG00000004183)	ENSMMUG00000000337	ENSMMUG00000014773	UGT2A3 (ENSMMUG00000047053)	UGT2B7 (ENSMMUG00000012355)	TMPRSS11E (ENSMMUG00000011103)	YTHDC1 (ENSMMUG00000002265)	TMPRSS11B (ENSMMUG00000060914)	TMPRSS11F (ENSMMUG00000020312)	TMPRSS11A (ENSMMUG00000000552)	TMPRSS11D (ENSMMUG00000050011)	GNRHR (ENSMMUG00000003779)	UBA6 (ENSMMUG00000003776)	STAP1 (ENSMMUG00000009392)	CENPC (ENSMMUG00000009390)
Rhinopithecus	ANCESTRAL SPECIES	409									ENSGT00940000164572.b	ENSGT01040000240670.a	ENSGT00940000164572.a	ENSGT00390000001890	ENSGT00390000017378	ENSGT00940000162261	ENSGT00940000161848	ENSGT01030000234626.B.x #22	ENSGT00940000161344	ENSGT01090000260040.a.a.b.t.b	ENSGT00940000165281	ENSGT00940000158332.a.b.c	ENSGT00940000162432
Golden snub-nosed monkey	MODERN SPECIES	1600									ENSRROG00000041864	ENSRROG00000039124	STATH (ENSRROG00000036329)	CSN2 (ENSRROG00000039742)	CSN1S1 (ENSRROG00000037818)	SULT1E1 (ENSRROG00000045146)	SULT1B1 (ENSRROG00000031828)	ENSRROG00000045770 #22	UGT2A1 (ENSRROG00000040776)	ENSRROG00000032012
Black snub-nosed monkey	MODERN SPECIES	743																ENSRBIG00000034226 #22	UGT2A1 (ENSRBIG00000043750)	ENSRBIG00000032766	ENSRBIG00000022354	ENSRBIG00000017711	UGT2A3 (ENSRBIG00000034168)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.c.a	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.x.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.c.a	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.x.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000013264.c.a	ENSGT00940000155913	ENSGT00910000147301	ENSGT00390000007183	ENSGT00940000154531.x.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877.h #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Capuchin	MODERN SPECIES	6	GTF2H5 (ENSCCAG00000030667)	ENSCCAG00000031330	TULP4 (ENSCCAG00000028211)	ENSCCAG00000013481	TMEM181 (ENSCCAG00000022105)	DYNLT1 (ENSCCAG00000035503)	ENSCCAG00000007021	SYTL3 (ENSCCAG00000034836)	EZR (ENSCCAG00000029069)	ENSCCAG00000029457	RSPH3 (ENSCCAG00000035584)	TAGAP (ENSCCAG00000036010)	FNDC1 (ENSCCAG00000021952)	SOD2 (ENSCCAG00000025254) #20	WTAP (ENSCCAG00000021303) #21	ACAT2 (ENSCCAG00000034076) #22	TCP1 (ENSCCAG00000028316) #24	MRPL18 (ENSCCAG00000027672) #25	PNLDC1 (ENSCCAG00000026232) #26	MAS1 (ENSCCAG00000012059) #27	IGF2R (ENSCCAG00000010739) #29	SLC22A1 (ENSCCAG00000030320) #30	SLC22A2 (ENSCCAG00000020700) #31	SLC22A3 (ENSCCAG00000035674) #32	PLG (ENSCCAG00000034420) #33	MAP3K4 (ENSCCAG00000028977) #34	AGPAT4 (ENSCCAG00000022357) #35	PRKN (ENSCCAG00000024514) #36	PACRG (ENSCCAG00000034067) #37	QKI (ENSCCAG00000025230)
Bolivian squirrel monkey	MODERN SPECIES	101	SNX9 (ENSSBOG00000025360)	SYNJ2 (ENSSBOG00000034876)	SERAC1 (ENSSBOG00000027520)	ENSSBOG00000028859	ENSSBOG00000035325	TULP4 (ENSSBOG00000032404)	TMEM181 (ENSSBOG00000025017)	ENSSBOG00000025349	SYTL3 (ENSSBOG00000017382)	EZR (ENSSBOG00000025519)	RSPH3 (ENSSBOG00000019792)	TAGAP (ENSSBOG00000030452)	FNDC1 (ENSSBOG00000027676)	ENSSBOG00000033881 #20	ENSSBOG00000017833 #21	ACAT2 (ENSSBOG00000035773) #22	TCP1 (ENSSBOG00000022736) #24	MRPL18 (ENSSBOG00000017384) #25	PNLDC1 (ENSSBOG00000019135) #26	MAS1 (ENSSBOG00000019912) #27	IGF2R (ENSSBOG00000024078) #29	SLC22A1 (ENSSBOG00000029054) #30	SLC22A2 (ENSSBOG00000035664) #31	SLC22A3 (ENSSBOG00000024841) #32	PLG (ENSSBOG00000033802) #33	MAP3K4 (ENSSBOG00000022969) #34	AGPAT4 (ENSSBOG00000023179) #35	PRKN (ENSSBOG00000019735) #36	PACRG (ENSSBOG00000036098) #37	QKI (ENSSBOG00000036267)	C6orf118 (ENSSBOG00000024744)
Marmoset	MODERN SPECIES	16	ENSCJAG00000070434	TULP4 (ENSCJAG00000003653)	ENSCJAG00000059699	TMEM181 (ENSCJAG00000047353)	ENSCJAG00000072282	DYNLT1 (ENSCJAG00000077634)	SYTL3 (ENSCJAG00000003730)	EZR (ENSCJAG00000003763)	ENSCJAG00000047099	ENSCJAG00000071144	RSPH3 (ENSCJAG00000011581)	TAGAP (ENSCJAG00000011616)	FNDC1 (ENSCJAG00000011622)	SOD2 (ENSCJAG00000011664) #20	WTAP (ENSCJAG00000011722) #21	ACAT2 (ENSCJAG00000011777) #22	TCP1 (ENSCJAG00000011792) #24	MRPL18 (ENSCJAG00000011859) #25	PNLDC1 (ENSCJAG00000011865) #26	ENSCJAG00000081097	IGF2R (ENSCJAG00000011908) #29	SLC22A2 (ENSCJAG00000012056) #31	SLC22A3 (ENSCJAG00000012093) #32	PLG (ENSCJAG00000012132) #33	ENSCJAG00000084439	MAP3K4 (ENSCJAG00000012176) #34	AGPAT4 (ENSCJAG00000012323) #35	PRKN (ENSCJAG00000012355) #36	PACRG (ENSCJAG00000012365) #37	QKI (ENSCJAG00000012368)	ENSCJAG00000077202
Mas night monkey	MODERN SPECIES	265	SERAC1 (ENSANAG00000032062)	GTF2H5 (ENSANAG00000029980)	ENSANAG00000033750	TULP4 (ENSANAG00000032456)	TMEM181 (ENSANAG00000021664)	ENSANAG00000016873	SYTL3 (ENSANAG00000021648)	EZR (ENSANAG00000022176)	ENSANAG00000028817	ENSANAG00000033290	RSPH3 (ENSANAG00000021629)	TAGAP (ENSANAG00000023564)	FNDC1 (ENSANAG00000028811)	SOD2 (ENSANAG00000024525) #20	WTAP (ENSANAG00000027064) #21	ACAT2 (ENSANAG00000030553) #22	TCP1 (ENSANAG00000033987) #24	MRPL18 (ENSANAG00000033398) #25	PNLDC1 (ENSANAG00000034713) #26	MAS1 (ENSANAG00000019902) #27	IGF2R (ENSANAG00000031865) #29	SLC22A1 (ENSANAG00000038334) #30	SLC22A2 (ENSANAG00000030328) #31	SLC22A3 (ENSANAG00000030361) #32	PLG (ENSANAG00000030380) #33	MAP3K4 (ENSANAG00000030551) #34	AGPAT4 (ENSANAG00000037521) #35	PRKN (ENSANAG00000032287) #36	ENSANAG00000019305	PACRG (ENSANAG00000020727) #37	QKI (ENSANAG00000029669)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Suina	ANCESTRAL SPECIES	18	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00940000156543
Chacoan peccary	MODERN SPECIES	58	ZDHHC14 (ENSCWAG00000003840)	SNX9 (ENSCWAG00000003804)	SYNJ2 (ENSCWAG00000003712)	SERAC1 (ENSCWAG00000003601)	GTF2H5 (ENSCWAG00000003578)	TULP4 (ENSCWAG00000003534)	TMEM181 (ENSCWAG00000003377)	DYNLT1 (ENSCWAG00000003343)	SYTL3 (ENSCWAG00000003293)	EZR (ENSCWAG00000003256)	RSPH3 (ENSCWAG00000003227)	ENSCWAG00000003211	FNDC1 (ENSCWAG00000003188)	SOD2 (ENSCWAG00000003162) #20	WTAP (ENSCWAG00000003142) #21	ACAT2 (ENSCWAG00000003116) #22	TCP1 (ENSCWAG00000003074) #24	MRPL18 (ENSCWAG00000003059) #25	PNLDC1 (ENSCWAG00000003002) #26	ENSCWAG00000002985	MAS1 (ENSCWAG00000002975) #27	IGF2R (ENSCWAG00000002925) #29	SLC22A1 (ENSCWAG00000002901) #30	SLC22A2 (ENSCWAG00000002880) #31	SLC22A3 (ENSCWAG00000002861) #32	ENSCWAG00000002821 #33	MAP3K4 (ENSCWAG00000002506) #34	AGPAT4 (ENSCWAG00000002443) #35	ENSCWAG00000002429 #36
Pig	MODERN SPECIES		ZDHHC14 (ENSSSCG00000035027)	SNX9 (ENSSSCG00000030535)	SYNJ2 (ENSSSCG00000012315)	SERAC1 (ENSSSCG00000012314)	GTF2H5 (ENSSSCG00000024019)	ENSSSCG00000031776	TMEM181 (ENSSSCG00000024876)	DYNLT1 (ENSSSCG00000033107)	SYTL3 (ENSSSCG00000004057)	EZR (ENSSSCG00000004058)	RSPH3 (ENSSSCG00000004055)	TAGAP (ENSSSCG00000004053)	FNDC1 (ENSSSCG00000004052)	SOD2 (ENSSSCG00000040317) #20	WTAP (ENSSSCG00000004050) #21	ACAT2 (ENSSSCG00000004049) #22	TCP1 (ENSSSCG00000004048) #24	MRPL18 (ENSSSCG00000004047) #25	PNLDC1 (ENSSSCG00000004046) #26	MAS1 (ENSSSCG00000059431) #27	IGF2R (ENSSSCG00000004044) #29	SLC22A1 (ENSSSCG00000004041) #30	SLC22A2 (ENSSSCG00000004040) #31	SLC22A3 (ENSSSCG00000004039) #32	PLG (ENSSSCG00000004038) #33	MAP3K4 (ENSSSCG00000004037) #34	AGPAT4 (ENSSSCG00000004033) #35	ENSSSCG00000053549	PRKN (ENSSSCG00000004032) #36	ENSSSCG00000047165	PACRG (ENSSSCG00000038153) #37
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Arabian camel	MODERN SPECIES	34	ZDHHC14 (ENSCDRG00005018018)	SNX9 (ENSCDRG00005017884)	SYNJ2 (ENSCDRG00005016839)	SERAC1 (ENSCDRG00005016470)	GTF2H5 (ENSCDRG00005016408)	ENSCDRG00005016299	TMEM181 (ENSCDRG00005015875)	ENSCDRG00005015822	SYTL3 (ENSCDRG00005015709)	ENSCDRG00005015561	RSPH3 (ENSCDRG00005015431)	TAGAP (ENSCDRG00005015381)	FNDC1 (ENSCDRG00005015292)	MnSOD (ENSCDRG00005015180) #20	WTAP (ENSCDRG00005015081) #21	ACAT2 (ENSCDRG00005015012) #22	TCP1 (ENSCDRG00005014875) #24	MRPL18 (ENSCDRG00005014810) #25	PNLDC1 (ENSCDRG00005014558) #26	MAS1 (ENSCDRG00005014532) #27	IGF2R (ENSCDRG00005014304) #29	SLC22A1 (ENSCDRG00005014227) #30	SLC22A2 (ENSCDRG00005014141) #31	SLC22A3 (ENSCDRG00005014054) #32	ENSCDRG00005013803 #33	MAP3K4 (ENSCDRG00005011806) #34	AGPAT4 (ENSCDRG00005011648) #35	PRKN (ENSCDRG00005010399) #36	PACRG (ENSCDRG00005010327) #37	QKI (ENSCDRG00005010246)	C6orf118 (ENSCDRG00005010197)
Alpaca	MODERN SPECIES	3586														SOD2 (ENSVPAG00000008201) #20	WTAP (ENSVPAG00000008205) #21	ACAT2 (ENSVPAG00000008207) #22	TCP1 (ENSVPAG00000008209) #24	MRPL18 (ENSVPAG00000008211) #25	ENSVPAG00000008213
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT01010000229882	ENSGT00390000007183	ENSGT00940000154531.k.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37	ENSGT00940000155310.b
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT01010000229882	ENSGT00390000007183	ENSGT00940000154531.k.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT01010000229882	ENSGT00390000007183	ENSGT00940000154531.k.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT01010000229882	ENSGT00390000007183	ENSGT00940000154531.k.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT01010000229882	ENSGT00390000007183	ENSGT00940000154531.k.b	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000017281.j	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00390000018085.a.b.b	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00940000154508.a.a.h	ENSGT00940000153877.h.c.b.b	ENSGT00950000186343
Beluga whale	MODERN SPECIES	80	SNX9 (ENSDLEG00000012695)	SYNJ2 (ENSDLEG00000012744)	SERAC1 (ENSDLEG00000012822)	GTF2H5 (ENSDLEG00000012851)	TULP4 (ENSDLEG00000012862)	TMEM181 (ENSDLEG00000012897)	DYNLT1 (ENSDLEG00000012925)	SYTL3 (ENSDLEG00000012934)	EZR (ENSDLEG00000012951)	RSPH3 (ENSDLEG00000013000)	TAGAP (ENSDLEG00000013116)	ENSDLEG00000013131	ENSDLEG00000013163	SOD2 (ENSDLEG00000013188) #20	WTAP (ENSDLEG00000013205) #21	ACAT2 (ENSDLEG00000013224) #22	TCP1 (ENSDLEG00000013249) #24	MRPL18 (ENSDLEG00000013282) #25	PNLDC1 (ENSDLEG00000013298) #26	MAS1 (ENSDLEG00000013351) #27	IGF2R (ENSDLEG00000013373) #29	SLC22A1 (ENSDLEG00000013591) #30	SLC22A2 (ENSDLEG00000013647) #31	SLC22A3 (ENSDLEG00000013670) #32	PLG (ENSDLEG00000013736) #33	MAP3K4 (ENSDLEG00000013778) #34	AGPAT4 (ENSDLEG00000013962) #35	ENSDLEG00000014031	ENSDLEG00000014046	ENSDLEG00000014063	ENSDLEG00000014077 #37
Narwhal	MODERN SPECIES	301	SYNJ2 (ENSMMNG00015010674)	SERAC1 (ENSMMNG00015010803)	GTF2H5 (ENSMMNG00015010910)	TULP4 (ENSMMNG00015010941)	ENSMMNG00015010987	TMEM181 (ENSMMNG00015011008)	ENSMMNG00015011048	SYTL3 (ENSMMNG00015011069)	EZR (ENSMMNG00015011090)	RSPH3 (ENSMMNG00015011129)	TAGAP (ENSMMNG00015011155)	FNDC1 (ENSMMNG00015011181)	ENSMMNG00015011212	SOD2 (ENSMMNG00015011230) #20	WTAP (ENSMMNG00015011260) #21	ACAT2 (ENSMMNG00015011293) #22	TCP1 (ENSMMNG00015011321) #24	MRPL18 (ENSMMNG00015011349) #25	PNLDC1 (ENSMMNG00015011367) #26	MAS1 (ENSMMNG00015011391) #27	IGF2R (ENSMMNG00015011406) #29	SLC22A1 (ENSMMNG00015011429) #30	ENSMMNG00015011446	SLC22A2 (ENSMMNG00015011459) #31	SLC22A3 (ENSMMNG00015011477) #32	ENSMMNG00015011493 #33	MAP3K4 (ENSMMNG00015011572) #34	AGPAT4 (ENSMMNG00015011728) #35	ENSMMNG00015011816	PACRG (ENSMMNG00015011827) #37	QKI (ENSMMNG00015011839)
Vaquita	MODERN SPECIES	3	ENSPSNG00000020609	SYNJ2 (ENSPSNG00000020311)	SERAC1 (ENSPSNG00000020095)	GTF2H5 (ENSPSNG00000020011)	TULP4 (ENSPSNG00000019944)	TMEM181 (ENSPSNG00000019785)	ENSPSNG00000019724	SYTL3 (ENSPSNG00000019533)	EZR (ENSPSNG00000019386)	RSPH3 (ENSPSNG00000019104)	TAGAP (ENSPSNG00000018854)	FNDC1 (ENSPSNG00000018682)	ENSPSNG00000018560	SOD2 (ENSPSNG00000018468) #20	WTAP (ENSPSNG00000018363) #21	ACAT2 (ENSPSNG00000018304) #22	TCP1 (ENSPSNG00000018222) #24	MRPL18 (ENSPSNG00000018155) #25	PNLDC1 (ENSPSNG00000017839) #26	MAS1 (ENSPSNG00000017797) #27	IGF2R (ENSPSNG00000017592) #29	ENSPSNG00000017517 #30	ENSPSNG00000017468	SLC22A2 (ENSPSNG00000017306) #31	SLC22A3 (ENSPSNG00000017154) #32	ENSPSNG00000016905 #33	MAP3K4 (ENSPSNG00000016678) #34	AGPAT4 (ENSPSNG00000016495) #35	ENSPSNG00000016413	ENSPSNG00000016356	PRKN (ENSPSNG00000015749) #36
Dolphin	MODERN SPECIES	3445														ENSTTRG00000010355 #20	WTAP (ENSTTRG00000010379) #21	ACAT2 (ENSTTRG00000010389) #22	TCP1 (ENSTTRG00000010393) #24	MRPL18 (ENSTTRG00000010404) #25	PNLDC1 (ENSTTRG00000010409) #26
Sperm whale	MODERN SPECIES	421																ACAT2 (ENSPCTG00005022140) #22	ENSPCTG00005022124 #24	MRPL18 (ENSPCTG00005022113) #25	PNLDC1 (ENSPCTG00005022102) #26
Blue whale	MODERN SPECIES	3	SYNJ2 (ENSBMSG00010011701)	SERAC1 (ENSBMSG00010011654)	GTF2H5 (ENSBMSG00010011624)	TULP4 (ENSBMSG00010011601)	ENSBMSG00010011592	TMEM181 (ENSBMSG00010011555)	ENSBMSG00010011520	SYTL3 (ENSBMSG00010011475)	EZR (ENSBMSG00010011421)	RSPH3 (ENSBMSG00010011388)	TAGAP (ENSBMSG00010011351)	FNDC1 (ENSBMSG00010011227)	ENSBMSG00010011186	ENSBMSG00010011159 #20	ENSBMSG00010011125 #21	ACAT2 (ENSBMSG00010011102) #22	TCP1 (ENSBMSG00010011064) #24	MRPL18 (ENSBMSG00010011042) #25	PNLDC1 (ENSBMSG00010010984) #26	MAS1 (ENSBMSG00010010947) #27	IGF2R (ENSBMSG00010010889) #29	ENSBMSG00010010858	SLC22A1 (ENSBMSG00010010839) #30	SLC22A2 (ENSBMSG00010010814) #31	SLC22A3 (ENSBMSG00010010779) #32	ENSBMSG00010010741 #33	MAP3K4 (ENSBMSG00010010709) #34	AGPAT4 (ENSBMSG00010010688) #35	ENSBMSG00010010664	PRKN (ENSBMSG00010010461) #36	ENSBMSG00010010418
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Yarkand deer	MODERN SPECIES	18	GTF2H5 (ENSCHYG00000017957)	TULP4 (ENSCHYG00000018070)	ENSCHYG00000018795	ENSCHYG00000018828	TMEM181 (ENSCHYG00000018947)	ENSCHYG00000020249	ENSCHYG00000020272	SYTL3 (ENSCHYG00000020333)	ENSCHYG00000020511	RSPH3 (ENSCHYG00000020694)	TAGAP (ENSCHYG00000020890)	ENSCHYG00000021069	FNDC1 (ENSCHYG00000021187)	ENSCHYG00000022090 #20	WTAP (ENSCHYG00000022403) #21	ACAT2 (ENSCHYG00000022487) #22	TCP1 (ENSCHYG00000022554) #24	MRPL18 (ENSCHYG00000022773) #25	PNLDC1 (ENSCHYG00000022800) #26	MAS1 (ENSCHYG00000022925) #27	IGF2R (ENSCHYG00000023202) #29	SLC22A1 (ENSCHYG00000025285) #30	SLC22A2 (ENSCHYG00000025351) #31	SLC22A3 (ENSCHYG00000025420) #32	ENSCHYG00000025465 #33	MAP3K4 (ENSCHYG00000025579) #34	AGPAT4 (ENSCHYG00000025772) #35	PRKN (ENSCHYG00000025824) #36	PACRG (ENSCHYG00000025979) #37	QKI (ENSCHYG00000026014)	C6orf118 (ENSCHYG00000026045)
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00940000157993.l	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.l	ENSGT00530000063558.B	ENSGT00390000013558.z	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b.d #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Goat	DUPLICATION
Goat	MODERN SPECIES	5	FABP9 (ENSCHIG00000013859)	PMP2 (ENSCHIG00000017466)	ENSCHIG00000022058	PAG1 (ENSCHIG00000005882)	ZNF704 (ENSCHIG00000009329)	ZBTB10 (ENSCHIG00000008950)	TPD52 (ENSCHIG00000016090)	MRPS28 (ENSCHIG00000018727)	HEY1 (ENSCHIG00000021515)	STMN2 (ENSCHIG00000014257)	ENSCHIG00000022803	IL7 (ENSCHIG00000013214)	ZC2HC1A (ENSCHIG00000022396)	PKIA (ENSCHIG00000022780)	ENSCHIG00000026486	ENSCHIG00000017797 #22	ENSCHIG00000012572	ENSCHIG00000024972	PEX2 (ENSCHIG00000011681)	ZFHX4 (ENSCHIG00000017123)	ENSCHIG00000020169	HNF4G (ENSCHIG00000001150)	CRISPLD1 (ENSCHIG00000016652)	PI15 (ENSCHIG00000016089)	GDAP1 (ENSCHIG00000006756)	JPH1 (ENSCHIG00000017967)	ENSCHIG00000017122	LY96 (ENSCHIG00000012530)	TMEM70 (ENSCHIG00000019890)	ELOC (ENSCHIG00000015198)	UBE2W (ENSCHIG00000025248)
Goat	MODERN SPECIES	28	SYNJ2 (ENSCHIG00000011077)	SERAC1 (ENSCHIG00000013202)	GTF2H5 (ENSCHIG00000000966)	TULP4 (ENSCHIG00000003373)	TMEM181 (ENSCHIG00000023369)	DYNLT1 (ENSCHIG00000026680)	SYTL3 (ENSCHIG00000016283)	EZR (ENSCHIG00000017900)	RSPH3 (ENSCHIG00000018819)	TAGAP (ENSCHIG00000008817)	FNDC1 (ENSCHIG00000023614)	ENSCHIG00000020625	ENSCHIG00000010882	SOD2 (ENSCHIG00000009947) #20	ENSCHIG00000026430 #21	ENSCHIG00000017426 #22	TCP1 (ENSCHIG00000016503) #24	ENSCHIG00000023286 #25	PNLDC1 (ENSCHIG00000003141) #26	MAS1 (ENSCHIG00000012964) #27	IGF2R (ENSCHIG00000010830) #29	SLC22A1 (ENSCHIG00000014819) #30	SLC22A2 (ENSCHIG00000006824) #31	SLC22A3 (ENSCHIG00000021136) #32	ENSCHIG00000011198 #33	MAP3K4 (ENSCHIG00000009330) #34	ENSCHIG00000024395	AGPAT4 (ENSCHIG00000016729) #35	ENSCHIG00000020982 #36	ENSCHIG00000025260 #36	ENSCHIG00000016416 #36
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	25	FABP4 (ENSOARG00020017607)	FABP9 (ENSOARG00020017569)	PMP2 (ENSOARG00020017455)	ENSOARG00020017413	PAG1 (ENSOARG00020017273)	ZNF704 (ENSOARG00020017158)	ENSOARG00020017111	ZBTB10 (ENSOARG00020016760)	MRPS28 (ENSOARG00020016516)	HEY1 (ENSOARG00020016436)	STMN2 (ENSOARG00020016309)	ENSOARG00020016227	IL7 (ENSOARG00020016028)	ZC2HC1A (ENSOARG00020015884)	ENSOARG00020015830	ENSOARG00020015780 #22	ENSOARG00020015710	PEX2 (ENSOARG00020015627)	ENSOARG00020015601	ZFHX4 (ENSOARG00020015358)	HNF4G (ENSOARG00020015145)	CRISPLD1 (ENSOARG00020014832)	PI15 (ENSOARG00020014740)	GDAP1 (ENSOARG00020014639)	JPH1 (ENSOARG00020014507)	ENSOARG00020014381	ENSOARG00020014341	ENSOARG00020014317	LY96 (ENSOARG00020014177)	TMEM70 (ENSOARG00020014121)	ENSOARG00020014058
Rambouillet Sheep	MODERN SPECIES	24	RPS25 (ENSOARG00020004228)	SYNJ2 (ENSOARG00020004254)	SERAC1 (ENSOARG00020004385)	GTF2H5 (ENSOARG00020004781)	TULP4 (ENSOARG00020004840)	TMEM181 (ENSOARG00020005095)	DYNLT1 (ENSOARG00020005652)	SYTL3 (ENSOARG00020005678)	ENSOARG00020005804	RSPH3 (ENSOARG00020005842)	TAGAP (ENSOARG00020005923)	ENSOARG00020005992	ENSOARG00020006017	SOD2 (ENSOARG00020006059) #20	WTAP (ENSOARG00020006133) #21	ENSOARG00020006176 #22	TCP1 (ENSOARG00020006218) #24	MRPL18 (ENSOARG00020006305) #25	PNLDC1 (ENSOARG00020006365) #26	MAS1 (ENSOARG00020006641) #27	IGF2R (ENSOARG00020007810) #29	SLC22A1 (ENSOARG00020025899) #30	SLC22A2 (ENSOARG00020025906) #31	SLC22A3 (ENSOARG00020025917) #32	ENSOARG00020025929 #33	MAP3K4 (ENSOARG00020025996) #34	AGPAT4 (ENSOARG00020026075) #35	PRKN (ENSOARG00020026093) #36	PACRG (ENSOARG00020026098) #37	ENSOARG00020026099	QKI (ENSOARG00020026100)
Bovinae	ANCESTRAL SPECIES	35	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00940000157993.l	ENSGT00530000063558.B	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
American bison	DUPLICATION
American bison	MODERN SPECIES	3189												ENSBBBG00000012509	IL7 (ENSBBBG00000012552)	ZC2HC1A (ENSBBBG00000012569)	PKIA (ENSBBBG00000001856)	ENSBBBG00000002409 #22	ENSBBBG00000001846	ENSBBBG00000012605
American bison	MODERN SPECIES	3071	SERAC1 (ENSBBBG00000011692)	GTF2H5 (ENSBBBG00000011523)	TULP4 (ENSBBBG00000011517)	TMEM181 (ENSBBBG00000011458)	DYNLT1 (ENSBBBG00000011420)	SYTL3 (ENSBBBG00000011406)	EZR (ENSBBBG00000002067)	RSPH3 (ENSBBBG00000011334)	ENSBBBG00000002057	ENSBBBG00000011303	FNDC1 (ENSBBBG00000002055)	ENSBBBG00000011265	ENSBBBG00000011260	SOD2 (ENSBBBG00000011253) #20	ENSBBBG00000011243 #21	ENSBBBG00000011209 #22	TCP1 (ENSBBBG00000002025) #24	MRPL18 (ENSBBBG00000011166) #25	PNLDC1 (ENSBBBG00000011161) #26	MAS1 (ENSBBBG00000011119) #27	IGF2R (ENSBBBG00000011115) #29	SLC22A1 (ENSBBBG00000011081) #30	SLC22A2 (ENSBBBG00000011068) #31	SLC22A3 (ENSBBBG00000011059) #32	ENSBBBG00000011051 #33	MAP3K4 (ENSBBBG00000001982) #34	ENSBBBG00000010920
Bos	ANCESTRAL SPECIES	19	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.j	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00940000157993.l	ENSGT00530000063558.B	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Bos_b	ANCESTRAL SPECIES	42	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.j	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00530000063558.B	ENSGT01040000241176	ENSGT00390000006208.a.f	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	5	CCN3 (ENSBIXG00005005725)	FABP12 (ENSBIXG00005005844)	FABP4 (ENSBIXG00005016838)	PMP2 (ENSBIXG00005002728)	FABP5 (ENSBIXG00005005727)	PAG1 (ENSBIXG00005016895)	ENSBIXG00005016921	ZBTB10 (ENSBIXG00005017084)	TPD52 (ENSBIXG00005017399)	MRPS28 (ENSBIXG00005017444)	HEY1 (ENSBIXG00005017496)	STMN2 (ENSBIXG00005017543)	IL7 (ENSBIXG00005017701)	ZC2HC1A (ENSBIXG00005017733)	PKIA (ENSBIXG00005017754)	ENSBIXG00005006362 #22	ENSBIXG00005017861	ENSBIXG00005017889	ENSBIXG00005006242	ENSBIXG00005017941	PEX2 (ENSBIXG00005017958)	ZFHX4 (ENSBIXG00005002922)	HNF4G (ENSBIXG00005018048)	ENSBIXG00005018061	CRISPLD1 (ENSBIXG00005002938)	PI15 (ENSBIXG00005018163)	GDAP1 (ENSBIXG00005018202)	JPH1 (ENSBIXG00005018221)	ENSBIXG00005002956	ENSBIXG00005002958	LY96 (ENSBIXG00005005658)
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005017210	SERAC1 (ENSBIXG00005017174)	ENSBIXG00005016761	ENSBIXG00005016735	TULP4 (ENSBIXG00005016689)	TMEM181 (ENSBIXG00005016376)	DYNLT1 (ENSBIXG00005002539)	SYTL3 (ENSBIXG00005015982)	EZR (ENSBIXG00005002517)	RSPH3 (ENSBIXG00005002509)	TAGAP (ENSBIXG00005015864)	FNDC1 (ENSBIXG00005002485)	ENSBIXG00005006566	ENSBIXG00005005505 #20	WTAP (ENSBIXG00005015616) #21	ENSBIXG00005015570 #22	ENSBIXG00005006136	TCP1 (ENSBIXG00005015526) #24	MRPL18 (ENSBIXG00005015451) #25	PNLDC1 (ENSBIXG00005015403) #26	MAS1 (ENSBIXG00005015332) #27	IGF2R (ENSBIXG00005015279) #29	SLC22A1 (ENSBIXG00005015034) #30	SLC22A2 (ENSBIXG00005006381) #31	SLC22A3 (ENSBIXG00005014926) #32	ENSBIXG00005007542 #33	MAP3K4 (ENSBIXG00005002084) #34	ENSBIXG00005006130	AGPAT4 (ENSBIXG00005014474) #35	PRKN (ENSBIXG00005007712) #36	PACRG (ENSBIXG00005013833) #37
Cow	DUPLICATION
Cow	MODERN SPECIES	5	FABP9 (ENSBTAG00000039718)	PMP2 (ENSBTAG00000000071)	FABP5 (ENSBTAG00000047330)	PAG1 (ENSBTAG00000014026)	ZNF704 (ENSBTAG00000021743)	ENSBTAG00000053020	ZBTB10 (ENSBTAG00000003339)	TPD52 (ENSBTAG00000007335)	MRPS28 (ENSBTAG00000001302)	HEY1 (ENSBTAG00000015717)	ENSBTAG00000032812	STMN2 (ENSBTAG00000020099)	IL7 (ENSBTAG00000016284)	ZC2HC1A (ENSBTAG00000018902)	PKIA (ENSBTAG00000008150)	ENSBTAG00000009539 #22	ENSBTAG00000050099	ENSBTAG00000039499	ENSBTAG00000032831	PEX2 (ENSBTAG00000003885)	ZFHX4 (ENSBTAG00000033268)	HNF4G (ENSBTAG00000008280)	CRISPLD1 (ENSBTAG00000004411)	PI15 (ENSBTAG00000019587)	GDAP1 (ENSBTAG00000012608)	JPH1 (ENSBTAG00000008842)	ENSBTAG00000032944	ENSBTAG00000048533	LY96 (ENSBTAG00000008864)	TMEM70 (ENSBTAG00000012920)	ELOC (ENSBTAG00000050514)
Cow	MODERN SPECIES	28	SERAC1 (ENSBTAG00000011509)	GTF2H5 (ENSBTAG00000008543)	TULP4 (ENSBTAG00000005083)	ENSBTAG00000045898	TMEM181 (ENSBTAG00000010838)	ENSBTAG00000004472	SYTL3 (ENSBTAG00000010334)	EZR (ENSBTAG00000010347)	RSPH3 (ENSBTAG00000005955)	TAGAP (ENSBTAG00000031701)	FNDC1 (ENSBTAG00000003938)	ENSBTAG00000048338	ENSBTAG00000052316	SOD2 (ENSBTAG00000006523) #20	WTAP (ENSBTAG00000007974) #21	ACAT2 (ENSBTAG00000002827) #22	TCP1 (ENSBTAG00000002829) #24	MRPL18 (ENSBTAG00000001289) #25	PNLDC1 (ENSBTAG00000015166) #26	MAS1 (ENSBTAG00000031724) #27	IGF2R (ENSBTAG00000002402) #29	SLC22A1 (ENSBTAG00000008540) #30	SLC22A2 (ENSBTAG00000009583) #31	SLC22A3 (ENSBTAG00000039080) #32	PLG (ENSBTAG00000001271) #33	MAP3K4 (ENSBTAG00000020079) #34	ENSBTAG00000052236	AGPAT4 (ENSBTAG00000007668) #35	PRKN (ENSBTAG00000018996) #36	PACRG (ENSBTAG00000011106) #37	QKI (ENSBTAG00000011593)
Bos_a	ANCESTRAL SPECIES	54	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.j	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.k	ENSGT00940000157993.l	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Wild yak	MODERN SPECIES	1168	SERAC1 (ENSBMUG00000001963)	GTF2H5 (ENSBMUG00000002023)	ENSBMUG00000002042	TMEM181 (ENSBMUG00000002081)	ENSBMUG00000002110	SYTL3 (ENSBMUG00000002194)	EZR (ENSBMUG00000002231)	RSPH3 (ENSBMUG00000002272)	ENSBMUG00000002298	ENSBMUG00000002323	FNDC1 (ENSBMUG00000002609)	ENSBMUG00000002677	ENSBMUG00000002680	SOD2 (ENSBMUG00000002696) #20	ENSBMUG00000002743 #21	ACAT2 (ENSBMUG00000002762) #22	TCP1 (ENSBMUG00000002835) #24	MRPL18 (ENSBMUG00000002874) #25	PNLDC1 (ENSBMUG00000002939) #26	MAS1 (ENSBMUG00000002956) #27	IGF2R (ENSBMUG00000003027) #29	SLC22A1 (ENSBMUG00000003078) #30	SLC22A2 (ENSBMUG00000003107) #31	SLC22A3 (ENSBMUG00000003131) #32	ENSBMUG00000003160 #33	MAP3K4 (ENSBMUG00000003212) #34	ENSBMUG00000003268	ENSBMUG00000003343 #35
Domestic yak	DUPLICATION
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	9	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)	LY96 (ENSBGRG00000015389)
Domestic yak	MODERN SPECIES	9	FABP5 (ENSBGRG00000019123)	PAG1 (ENSBGRG00000019051)	ZNF704 (ENSBGRG00000018852)	ENSBGRG00000018803	ZBTB10 (ENSBGRG00000018559)	TPD52 (ENSBGRG00000018118)	ENSBGRG00000018076	MRPS28 (ENSBGRG00000018011)	HEY1 (ENSBGRG00000017930)	STMN2 (ENSBGRG00000017859)	ENSBGRG00000017831	ENSBGRG00000017814	IL7 (ENSBGRG00000017442)	ZC2HC1A (ENSBGRG00000017225)	PKIA (ENSBGRG00000017144)	ENSBGRG00000017091 #22	ENSBGRG00000017073 #22	ENSBGRG00000017028	ENSBGRG00000016950	PEX2 (ENSBGRG00000016881)	ENSBGRG00000016845	ENSBGRG00000016816	ZFHX4 (ENSBGRG00000016680)	HNF4G (ENSBGRG00000016548)	ENSBGRG00000016483	CRISPLD1 (ENSBGRG00000016187)	ENSBGRG00000016157	PI15 (ENSBGRG00000015926)	GDAP1 (ENSBGRG00000015785)	JPH1 (ENSBGRG00000015605)	FADS2 (ENSBGRG00000015525)
Domestic yak	MODERN SPECIES	1	SNX9 (ENSBGRG00000026688)	SYNJ2 (ENSBGRG00000026679)	SERAC1 (ENSBGRG00000026663)	ENSBGRG00000026645	TULP4 (ENSBGRG00000026640)	TMEM181 (ENSBGRG00000026630)	DYNLT1 (ENSBGRG00000026623)	SYTL3 (ENSBGRG00000026617)	EZR (ENSBGRG00000026603)	RSPH3 (ENSBGRG00000026600)	TAGAP (ENSBGRG00000026597)	FNDC1 (ENSBGRG00000026585)	ENSBGRG00000026571 #20	ENSBGRG00000026563 ##21	ENSBGRG00000026557 #21	ENSBGRG00000026550 #22	TCP1 (ENSBGRG00000026527) #24	MRPL18 (ENSBGRG00000026525) #25	PNLDC1 (ENSBGRG00000026494) #26	MAS1 (ENSBGRG00000026489) #27	ENSBGRG00000026486	IGF2R (ENSBGRG00000021970) #29	SLC22A1 (ENSBGRG00000021387) #30	SLC22A2 (ENSBGRG00000021163) #31	SLC22A3 (ENSBGRG00000020975) #32	ENSBGRG00000020646 #33	ENSBGRG00000020575	MAP3K4 (ENSBGRG00000017036) #34	AGPAT4 (ENSBGRG00000016794) #35	ENSBGRG00000016774	PRKN (ENSBGRG00000015642) #36
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	179	ENSMMSG00000007955	CCN3 (ENSMMSG00000007984)	FABP12 (ENSMMSG00000008001)	FABP4 (ENSMMSG00000008031)	FABP9 (ENSMMSG00000008067)	ENSMMSG00000008129	PAG1 (ENSMMSG00000008150)	ZNF704 (ENSMMSG00000008169)	ZBTB10 (ENSMMSG00000008194)	TPD52 (ENSMMSG00000008296)	MRPS28 (ENSMMSG00000009043)	HEY1 (ENSMMSG00000009080)	STMN2 (ENSMMSG00000009102)	IL7 (ENSMMSG00000009163)	PKIA (ENSMMSG00000009271)	ENSMMSG00000009310 #22	ENSMMSG00000009363	PEX2 (ENSMMSG00000009421)	ZFHX4 (ENSMMSG00000009465)	ENSMMSG00000009642	HNF4G (ENSMMSG00000009664)	ENSMMSG00000009721	ENSMMSG00000009729	CRISPLD1 (ENSMMSG00000009747)	PI15 (ENSMMSG00000009843)	GDAP1 (ENSMMSG00000009866)	JPH1 (ENSMMSG00000009896)	ENSMMSG00000009924	ENSMMSG00000009942	LY96 (ENSMMSG00000009965)	TMEM70 (ENSMMSG00000010023)
Siberian musk deer	MODERN SPECIES	61	SNX9 (ENSMMSG00000001061)	SYNJ2 (ENSMMSG00000001120)	SERAC1 (ENSMMSG00000001280)	GTF2H5 (ENSMMSG00000001513)	TULP4 (ENSMMSG00000001543)	TMEM181 (ENSMMSG00000001689)	ENSMMSG00000001893	SYTL3 (ENSMMSG00000001907)	EZR (ENSMMSG00000001963)	RSPH3 (ENSMMSG00000002005)	TAGAP (ENSMMSG00000002040)	ENSMMSG00000002090	FNDC1 (ENSMMSG00000002110)	ENSMMSG00000002137 #20	WTAP (ENSMMSG00000002177) #21	ENSMMSG00000002220 #22	TCP1 (ENSMMSG00000002241) #24	MRPL18 (ENSMMSG00000002291) #25	PNLDC1 (ENSMMSG00000002313) #26	MAS1 (ENSMMSG00000002388) #27	IGF2R (ENSMMSG00000002420) #29	SLC22A1 (ENSMMSG00000002522) #30	SLC22A2 (ENSMMSG00000002601) #31	SLC22A3 (ENSMMSG00000002642) #32	ENSMMSG00000002676 #33	ENSMMSG00000002739	MAP3K4 (ENSMMSG00000002913) #34	AGPAT4 (ENSMMSG00000003318) #35	PRKN (ENSMMSG00000003365) #36	ENSMMSG00000003500	PACRG (ENSMMSG00000003517) #37
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Equus	ANCESTRAL SPECIES	46	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a.b ##21	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Donkey	MODERN SPECIES	20	SNX9 (ENSEASG00005018899)	SYNJ2 (ENSEASG00005018902)	SERAC1 (ENSEASG00005018908)	ENSEASG00005032334	TULP4 (ENSEASG00005018912)	TMEM181 (ENSEASG00005018921)	DYNLT1 (ENSEASG00005018942)	SYTL3 (ENSEASG00005018960)	EZR (ENSEASG00005018988)	RSPH3 (ENSEASG00005018991)	TAGAP (ENSEASG00005018994)	FNDC1 (ENSEASG00005019003)	ENSEASG00005019012 #20	ENSEASG00005023660 ##21	WTAP (ENSEASG00005024385) #21	ACAT2 (ENSEASG00005019019) #22	TCP1 (ENSEASG00005019021) #24	ENSEASG00005028667 #25	PNLDC1 (ENSEASG00005019029) #26	MAS1 (ENSEASG00005019033) #27	IGF2R (ENSEASG00005019232) #29	SLC22A1 (ENSEASG00005019667) #30	SLC22A2 (ENSEASG00005019670) #31	SLC22A3 (ENSEASG00005019679) #32	ENSEASG00005019697 #33	MAP3K4 (ENSEASG00005019701) #34	ENSEASG00005019709	ENSEASG00005019711 #35	PRKN (ENSEASG00005019721) #36	PACRG (ENSEASG00005019723) #37	QKI (ENSEASG00005019724)
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Megabat	MODERN SPECIES	4031														SOD2 (ENSPVAG00000005302) #20	WTAP (ENSPVAG00000005310) #21	ACAT2 (ENSPVAG00000005312) #22	TCP1 (ENSPVAG00000005316) #24	MRPL18 (ENSPVAG00000005322) #25	PNLDC1 (ENSPVAG00000005325) #26	MAS1 (ENSPVAG00000005330) #27	IGF2R (ENSPVAG00000005331) #29	SLC22A1 (ENSPVAG00000005337) #30
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Greater horseshoe bat	MODERN SPECIES	21	SYNJ2 (ENSRFEG00010020202)	SERAC1 (ENSRFEG00010020518)	GTF2H5 (ENSRFEG00010005282)	TULP4 (ENSRFEG00010005329)	TMEM181 (ENSRFEG00010005412)	ENSRFEG00010005488	ENSRFEG00010005510	ENSRFEG00010005541	ENSRFEG00010005565	EZR (ENSRFEG00010005668)	RSPH3 (ENSRFEG00010005806)	TAGAP (ENSRFEG00010005835)	FNDC1 (ENSRFEG00010005884)	SOD2 (ENSRFEG00010005963) #20	ENSRFEG00010006054 #21	ACAT2 (ENSRFEG00010006101) #22	ENSRFEG00010006182 #24	MRPL18 (ENSRFEG00010006349) #25	PNLDC1 (ENSRFEG00010006385) #26	MAS1 (ENSRFEG00010006507) #27	IGF2R (ENSRFEG00010006536) #29	SLC22A1 (ENSRFEG00010006710) #30	SLC22A2 (ENSRFEG00010006879) #31	ENSRFEG00010007005	SLC22A3 (ENSRFEG00010007045) #32	ENSRFEG00010007176 #33	MAP3K4 (ENSRFEG00010007347) #34	AGPAT4 (ENSRFEG00010008317) #35	PRKN (ENSRFEG00010008431) #36	PACRG (ENSRFEG00010008690) #37	QKI (ENSRFEG00010008753)
Microbat	MODERN SPECIES	1439										ENSMLUG00000001931	RSPH3 (ENSMLUG00000012768)	TAGAP (ENSMLUG00000012777)	FNDC1 (ENSMLUG00000029080)	SOD2 (ENSMLUG00000012242) #20	WTAP (ENSMLUG00000000721) #21	ACAT2 (ENSMLUG00000000725) #22	TCP1 (ENSMLUG00000000732) #24	MRPL18 (ENSMLUG00000000743) #25	PNLDC1 (ENSMLUG00000000747) #26
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.n	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.n	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
lion	MODERN SPECIES	5	SYNJ2 (ENSPLOG00000002967)	ENSPLOG00000003092	SERAC1 (ENSPLOG00000003108)	GTF2H5 (ENSPLOG00000003144)	TULP4 (ENSPLOG00000003250)	ENSPLOG00000003310	TMEM181 (ENSPLOG00000003343)	DYNLT1 (ENSPLOG00000003373)	SYTL3 (ENSPLOG00000003399)	EZR (ENSPLOG00000003444)	RSPH3 (ENSPLOG00000003506)	TAGAP (ENSPLOG00000003565)	FNDC1 (ENSPLOG00000003601)	SOD2 (ENSPLOG00000003669) #20	WTAP (ENSPLOG00000003697) #21	ACAT2 (ENSPLOG00000003718) #22	TCP1 (ENSPLOG00000003746) #24	MRPL18 (ENSPLOG00000003790) #25	PNLDC1 (ENSPLOG00000003816) #26	MAS1 (ENSPLOG00000003857) #27	IGF2R (ENSPLOG00000003880) #29	SLC22A1 (ENSPLOG00000004002) #30	SLC22A2 (ENSPLOG00000004027) #31	SLC22A3 (ENSPLOG00000004048) #32	ENSPLOG00000004061 #33	ENSPLOG00000004079 #33	ENSPLOG00000004087 #33	MAP3K4 (ENSPLOG00000004139) #34	AGPAT4 (ENSPLOG00000004245) #35	PRKN (ENSPLOG00000004285) #36	PACRG (ENSPLOG00000004324) #37
leopard	MODERN SPECIES	59	ZDHHC14 (ENSPPRG00000009654)	SNX9 (ENSPPRG00000009191)	SYNJ2 (ENSPPRG00000009068)	ENSPPRG00000016782	SERAC1 (ENSPPRG00000007784)	GTF2H5 (ENSPPRG00000007199)	TULP4 (ENSPPRG00000006978)	TMEM181 (ENSPPRG00000006100)	DYNLT1 (ENSPPRG00000005411)	SYTL3 (ENSPPRG00000004402)	EZR (ENSPPRG00000002344)	RSPH3 (ENSPPRG00000001447)	ENSPPRG00000000588	SOD2 (ENSPPRG00000019418) #20	WTAP (ENSPPRG00000016764) #21	ACAT2 (ENSPPRG00000014607) #22	TCP1 (ENSPPRG00000014032) #24	MRPL18 (ENSPPRG00000013063) #25	PNLDC1 (ENSPPRG00000012854) #26	MAS1 (ENSPPRG00000016120) #27	IGF2R (ENSPPRG00000010975) #29	SLC22A1 (ENSPPRG00000009083) #30	SLC22A2 (ENSPPRG00000008200) #31	SLC22A3 (ENSPPRG00000007817) #32	ENSPPRG00000007637 #33	MAP3K4 (ENSPPRG00000007372) #34	AGPAT4 (ENSPPRG00000003125) #35	PRKN (ENSPPRG00000002801) #36	PACRG (ENSPPRG00000018305) #37	QKI (ENSPPRG00000013383)	C6orf118 (ENSPPRG00000012423)
Tiger	MODERN SPECIES	551	ZDHHC14 (ENSPTIG00000014488)	SNX9 (ENSPTIG00000016966)	SYNJ2 (ENSPTIG00000018780)	ENSPTIG00000005689	GTF2H5 (ENSPTIG00000006736)	TULP4 (ENSPTIG00000007104)	TMEM181 (ENSPTIG00000011656)	DYNLT1 (ENSPTIG00000015848)	SYTL3 (ENSPTIG00000016444)	EZR (ENSPTIG00000003011)	RSPH3 (ENSPTIG00000010790)	ENSPTIG00000013679	ENSPTIG00000014899	SOD2 (ENSPTIG00000018855) #20	WTAP (ENSPTIG00000004824) #21	ACAT2 (ENSPTIG00000006762) #22	TCP1 (ENSPTIG00000007384) #24	MRPL18 (ENSPTIG00000010107) #25	PNLDC1 (ENSPTIG00000011501) #26	MAS1 (ENSPTIG00000001177) #27	ENSPTIG00000014351	IGF2R (ENSPTIG00000015202) #29	SLC22A1 (ENSPTIG00000019426) #30	SLC22A2 (ENSPTIG00000006985) #31	SLC22A3 (ENSPTIG00000008644) #32	ENSPTIG00000010411 #33	MAP3K4 (ENSPTIG00000017590) #34	AGPAT4 (ENSPTIG00000021603) #35	PRKN (ENSPTIG00000021925) #36	PACRG (ENSPTIG00000004368) #37	ENSPTIG00000007481
Cat	MODERN SPECIES	236	ZDHHC14 (ENSFCAG00000006280)	SNX9 (ENSFCAG00000010853)	SYNJ2 (ENSFCAG00000010854)	SERAC1 (ENSFCAG00000010855)	GTF2H5 (ENSFCAG00000034208)	TULP4 (ENSFCAG00000007987)	TMEM181 (ENSFCAG00000007988)	DYNLT1 (ENSFCAG00000007990)	SYTL3 (ENSFCAG00000007991)	EZR (ENSFCAG00000007992)	RSPH3 (ENSFCAG00000028166)	TAGAP (ENSFCAG00000014702)	FNDC1 (ENSFCAG00000022317)	SOD2 (ENSFCAG00000002843) #20	WTAP (ENSFCAG00000002844) #21	ACAT2 (ENSFCAG00000002845) #22	TCP1 (ENSFCAG00000002846) #24	MRPL18 (ENSFCAG00000002847) #25	PNLDC1 (ENSFCAG00000002848) #26	MAS1 (ENSFCAG00000002849) #27	IGF2R (ENSFCAG00000002850) #29	SLC22A1 (ENSFCAG00000002851) #30	SLC22A2 (ENSFCAG00000002852) #31	SLC22A3 (ENSFCAG00000000355) #32	PLG (ENSFCAG00000023975) #33	MAP3K4 (ENSFCAG00000000356) #34	ENSFCAG00000038094	AGPAT4 (ENSFCAG00000000357) #35	PRKN (ENSFCAG00000038081) #36	ENSFCAG00000034013	PACRG (ENSFCAG00000028010) #37
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Canidae	ANCESTRAL SPECIES	34	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000153524.b.a.a	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00940000157330 #37	ENSGT00940000155310.b
Dingo	MODERN SPECIES	125	SNX9 (ENSCAFG00020015786)	SYNJ2 (ENSCAFG00020015809)	SERAC1 (ENSCAFG00020016376)	TULP4 (ENSCAFG00020017632)	ENSCAFG00020017637	TMEM181 (ENSCAFG00020017638)	ENSCAFG00020017657	SYTL3 (ENSCAFG00020017661)	EZR (ENSCAFG00020017702)	RSPH3 (ENSCAFG00020017704)	ENSCAFG00020017705	TAGAP (ENSCAFG00020017706)	FNDC1 (ENSCAFG00020017707)	SOD2 (ENSCAFG00020017714) #20	WTAP (ENSCAFG00020017718) #21	ACAT2 (ENSCAFG00020017725) #22	TCP1 (ENSCAFG00020017729) #24	MRPL18 (ENSCAFG00020017736) #25	PNLDC1 (ENSCAFG00020017742) #26	MAS1 (ENSCAFG00020017759) #27	IGF2R (ENSCAFG00020017822) #29	ENSCAFG00020018698 #30	SLC22A2 (ENSCAFG00020018701) #31	ENSCAFG00020018703	SLC22A3 (ENSCAFG00020018716) #32	ENSCAFG00020018797 #33	MAP3K4 (ENSCAFG00020018821) #34	AGPAT4 (ENSCAFG00020018873) #35	ENSCAFG00020018877 #36	ENSCAFG00020018908 #36	ENSCAFG00020018975 #36
Dog	MODERN SPECIES		SNX9 (ENSCAFG00845000878)	SYNJ2 (ENSCAFG00845000995)	SERAC1 (ENSCAFG00845001134)	GTF2H5 (ENSCAFG00845001194)	TULP4 (ENSCAFG00845001243)	TMEM181 (ENSCAFG00845001296)	DYNLT1 (ENSCAFG00845001317)	SYTL3 (ENSCAFG00845001348)	EZR (ENSCAFG00845001373)	RSPH3 (ENSCAFG00845001431)	ENSCAFG00845001443	TAGAP (ENSCAFG00845001461)	FNDC1 (ENSCAFG00845001542)	SOD2 (ENSCAFG00845001754) #20	WTAP (ENSCAFG00845001806) #21	ACAT2 (ENSCAFG00845001848) #22	TCP1 (ENSCAFG00845001904) #24	MRPL18 (ENSCAFG00845001976) #25	PNLDC1 (ENSCAFG00845001998) #26	MAS1 (ENSCAFG00845002042) #27	IGF2R (ENSCAFG00845002089) #29	SLC22A1 (ENSCAFG00845002132) #30	SLC22A2 (ENSCAFG00845002163) #31	SLC22A3 (ENSCAFG00845002183) #32	PLG (ENSCAFG00845002222) #33	MAP3K4 (ENSCAFG00845002271) #34	AGPAT4 (ENSCAFG00845002356) #35	PRKN (ENSCAFG00845002459) #36	PACRG (ENSCAFG00845002583) #37	QKI (ENSCAFG00845002617)	ENSCAFG00845004368
Red fox	MODERN SPECIES	157	ENSVVUG00000007425	SYNJ2 (ENSVVUG00000007407)	SERAC1 (ENSVVUG00000007380)	TULP4 (ENSVVUG00000007373)	TMEM181 (ENSVVUG00000006803)	DYNLT1 (ENSVVUG00000006778)	SYTL3 (ENSVVUG00000006766)	EZR (ENSVVUG00000006757)	RSPH3 (ENSVVUG00000006742)	ENSVVUG00000006737	TAGAP (ENSVVUG00000006731)	FNDC1 (ENSVVUG00000006697)	ENSVVUG00000006676 #20	WTAP (ENSVVUG00000006645) #21	ENSVVUG00000006644	ACAT2 (ENSVVUG00000006634) #22	TCP1 (ENSVVUG00000006612) #24	MRPL18 (ENSVVUG00000006607) #25	PNLDC1 (ENSVVUG00000006586) #26	MAS1 (ENSVVUG00000006583) #27	IGF2R (ENSVVUG00000002250) #29	SLC22A1 (ENSVVUG00000001730) #30	SLC22A2 (ENSVVUG00000001717) #31
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
American mink	MODERN SPECIES	4	ZDHHC14 (ENSNVIG00000009059)	SNX9 (ENSNVIG00000009085)	SYNJ2 (ENSNVIG00000009140)	SERAC1 (ENSNVIG00000009167)	TF2H5 (ENSNVIG00000009285)	TULP4 (ENSNVIG00000009306)	TMEM181 (ENSNVIG00000009381)	DYNLT1 (ENSNVIG00000009650)	SYTL3 (ENSNVIG00000009680)	EZR (ENSNVIG00000009830)	TAGAP (ENSNVIG00000009891)	FNDC1 (ENSNVIG00000009936)	ENSNVIG00000010133	SODM (ENSNVIG00000010142) #20	WTAP (ENSNVIG00000010202) #21	ACAT2 (ENSNVIG00000010262) #22	TCP1 (ENSNVIG00000010276) #24	RM18 (ENSNVIG00000010351) #25	PNLDC1 (ENSNVIG00000010375) #26	MAS1 (ENSNVIG00000010425) #27	IGF2R (ENSNVIG00000010447) #29	SLC22A1 (ENSNVIG00000010572) #30	SLC22A2 (ENSNVIG00000010662) #31	SLC22A3 (ENSNVIG00000010693) #32	ENSNVIG00000010704 #33	MAP3K4 (ENSNVIG00000010747) #34	ENSNVIG00000010894	AGPAT4 (ENSNVIG00000010903) #35	ENSNVIG00000010918 #36
Ferret	MODERN SPECIES	321	ZDHHC14 (ENSMPUG00000005351)	SNX9 (ENSMPUG00000005333)	SYNJ2 (ENSMPUG00000005323)	SERAC1 (ENSMPUG00000005304)	GTF2H5 (ENSMPUG00000005299)	TULP4 (ENSMPUG00000005290)	TMEM181 (ENSMPUG00000005207)	DYNLT1 (ENSMPUG00000005205)	SYTL3 (ENSMPUG00000005195)	EZR (ENSMPUG00000005183)	RSPH3 (ENSMPUG00000005176)	TAGAP (ENSMPUG00000005167)	FNDC1 (ENSMPUG00000005104)	SOD2 (ENSMPUG00000005045) #20	WTAP (ENSMPUG00000005036) #21	ACAT2 (ENSMPUG00000005030) #22	TCP1 (ENSMPUG00000005020) #24	MRPL18 (ENSMPUG00000005009) #25	PNLDC1 (ENSMPUG00000004920) #26	MAS1 (ENSMPUG00000019617) #27	ENSMPUG00000019615	IGF2R (ENSMPUG00000004888) #29	SLC22A1 (ENSMPUG00000004685) #30	SLC22A2 (ENSMPUG00000004670) #31	SLC22A3 (ENSMPUG00000004654) #32	ENSMPUG00000004632 #33	MAP3K4 (ENSMPUG00000004612) #34	AGPAT4 (ENSMPUG00000004604) #35	ENSMPUG00000004601 #36	ENSMPUG00000004595	ENSMPUG00000004593 #36
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00950000186188	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Giant Panda	MODERN SPECIES	1	SNX9 (ENSAMEG00000009626)	SYNJ2 (ENSAMEG00000009581)	SERAC1 (ENSAMEG00000009567)	GTF2H5 (ENSAMEG00000028196)	TULP4 (ENSAMEG00000009544)	ENSAMEG00000025985	TMEM181 (ENSAMEG00000009492)	DYNLT1 (ENSAMEG00000009483)	SYTL3 (ENSAMEG00000009448)	EZR (ENSAMEG00000009395)	RSPH3 (ENSAMEG00000009373)	TAGAP (ENSAMEG00000009357)	FNDC1 (ENSAMEG00000003564)	ENSAMEG00000015466 #20	WTAP (ENSAMEG00000025264) #21	ACAT2 (ENSAMEG00000015430) #22	TCP1 (ENSAMEG00000015405) #24	MRPL18 (ENSAMEG00000015398) #25	PNLDC1 (ENSAMEG00000015371) #26	MAS1 (ENSAMEG00000019584) #27	IGF2R (ENSAMEG00000015172) #29	SLC22A1 (ENSAMEG00000015110) #30	SLC22A2 (ENSAMEG00000015045) #31	SLC22A3 (ENSAMEG00000015037) #32	ENSAMEG00000015960 #33	MAP3K4 (ENSAMEG00000015908) #34	ENSAMEG00000015885 #35	PRKN (ENSAMEG00000015876) #36	PACRG (ENSAMEG00000008449) #37	QKI (ENSAMEG00000008459)	ENSAMEG00000027289
Ursus	ANCESTRAL SPECIES	81	ENSGT00940000179662	ENSGT00940000160715.e	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00950000186188	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00970000197976	ENSGT00940000157330 #37	ENSGT00940000155310.b
American black bear	MODERN SPECIES	5145																ENSUAMG00000015931 #22	TCP1 (ENSUAMG00000015793) #24	MRPL18 (ENSUAMG00000015786) #25	PNLDC1 (ENSUAMG00000015783) #26	MAS1 (ENSUAMG00000015780) #27
Polar bear	MODERN SPECIES	150	SYNJ2 (ENSUMAG00000012826)	SERAC1 (ENSUMAG00000012320)	GTF2H5 (ENSUMAG00000012271)	TULP4 (ENSUMAG00000012196)	ENSUMAG00000012177	TMEM181 (ENSUMAG00000012155)	DYNLT1 (ENSUMAG00000012151)	SYTL3 (ENSUMAG00000012070)	EZR (ENSUMAG00000012047)	RSPH3 (ENSUMAG00000012040)	TAGAP (ENSUMAG00000012036)	FNDC1 (ENSUMAG00000011974)	SOD2 (ENSUMAG00000011961) #20	WTAP (ENSUMAG00000011957) #21	ENSUMAG00000011954	ACAT2 (ENSUMAG00000011942) #22	TCP1 (ENSUMAG00000011924) #24	MRPL18 (ENSUMAG00000011916) #25	PNLDC1 (ENSUMAG00000011903) #26	MAS1 (ENSUMAG00000011898) #27	IGF2R (ENSUMAG00000011876) #29	SLC22A1 (ENSUMAG00000011827) #30	SLC22A2 (ENSUMAG00000011818) #31	SLC22A3 (ENSUMAG00000011813) #32	ENSUMAG00000011793 #33	MAP3K4 (ENSUMAG00000011760) #34	AGPAT4 (ENSUMAG00000011739) #35	ENSUMAG00000011729 #36	ENSUMAG00000011710	ENSUMAG00000011702 #36	ENSUMAG00000011694
Eulipotyphla	ANCESTRAL SPECIES	2107																ENSGT01030000234626.B #22	ENSGT00550000074878 #24
Common shrew	MODERN SPECIES	1517																ACAT2 (ENSSARG00000002451) #22	TCP1 (ENSSARG00000002463) #24
Hedgehog	MODERN SPECIES	2118																ACAT2 (ENSEEUG00000002076) #22	TCP1 (ENSEEUG00000002140) #24
Atlantogenata	ANCESTRAL SPECIES	96	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330 #37	ENSGT00940000155310.b
Afrotheria	ANCESTRAL SPECIES	113	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00940000168329	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Tenrec	MODERN SPECIES	2026																ACAT2 (ENSETEG00000015643) #22	TCP1 (ENSETEG00000015644) #24
Afrotheria_a	ANCESTRAL SPECIES	116	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.b.b #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00940000168329	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Elephant	MODERN SPECIES	520	SNX9 (ENSLAFG00000014044)	SYNJ2 (ENSLAFG00000011979)	SERAC1 (ENSLAFG00000000802)	GTF2H5 (ENSLAFG00000000806)	TULP4 (ENSLAFG00000002476)	TMEM181 (ENSLAFG00000007610)	DYNLT1 (ENSLAFG00000007620)	SYTL3 (ENSLAFG00000009320)	EZR (ENSLAFG00000009321)	ENSLAFG00000029097	RSPH3 (ENSLAFG00000007976)	TAGAP (ENSLAFG00000026460)	ENSLAFG00000022877	SOD2 (ENSLAFG00000007331) #20	WTAP (ENSLAFG00000007335) #21	ACAT2 (ENSLAFG00000007904) #22	TCP1 (ENSLAFG00000007909) #24	MRPL18 (ENSLAFG00000002501) #25	PNLDC1 (ENSLAFG00000030189) #26	MAS1 (ENSLAFG00000001539) #27	IGF2R (ENSLAFG00000017191) #29	SLC22A1 (ENSLAFG00000011681) #30	SLC22A2 (ENSLAFG00000011288) #31	SLC22A3 (ENSLAFG00000005825) #32	ENSLAFG00000004237 #33	MAP3K4 (ENSLAFG00000012768) #34	AGPAT4 (ENSLAFG00000021414) #35	ENSLAFG00000031170	ENSLAFG00000003358	PACRG (ENSLAFG00000002732) #37	QKI (ENSLAFG00000021654)
Hyrax	MODERN SPECIES	1632																ACAT2 (ENSPCAG00000013997) #22	TCP1 (ENSPCAG00000014055) #24	MRPL18 (ENSPCAG00000014116) #25	PNLDC1 (ENSPCAG00000014169) #26
Xenarthra	ANCESTRAL SPECIES	1799																ENSGT01030000234626.B #22	ENSGT00550000074878 #24
Sloth	MODERN SPECIES	1821																ACAT2 (ENSCHOG00000002079) #22	TCP1 (ENSCHOG00000002085) #24
Armadillo	MODERN SPECIES	1979																ACAT2 (ENSDNOG00000002502) #22	TCP1 (ENSDNOG00000025965) #24
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.f	ENSGT00940000157993.e.b	ENSGT00940000157993.e.a	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.`b.a.a.b #27	ENSGT01030000234639.A.a.`b.a.b #27	ENSGT01030000234639.A.a.ab #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993.f	ENSGT00940000157993.e.b	ENSGT00940000157993.e.a	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.`b.a.a.b #27	ENSGT01030000234639.A.a.`b.a.b #27	ENSGT01030000234639.A.a.ab #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172.bb	ENSGT00940000157993.f	ENSGT00390000003197.h.b	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.`b.a.a.b #27	ENSGT01030000234639.A.a.ab #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330 #37
Diprotodontia_a	ANCESTRAL SPECIES	43	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172.bb	ENSGT00940000157993.f	ENSGT00390000003197.h.b	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931.a.a ##21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.`b.a.a.b #27	ENSGT01030000234639.A.a.ab #27	ENSGT00390000013943 #29	ENSGT00940000162065 #30	ENSGT00940000155089 #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000168329	ENSGT00940000157330 #37
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1190	ENSVURG00010018802	ENSVURG00010018829	ENSVURG00010018845	ENSVURG00010018851	ENSVURG00010018882	ENSVURG00010018934	ENSVURG00010018937	ENSVURG00010018940	ENSVURG00010018948	ENSVURG00010018954	ENSVURG00010018957	ENSVURG00010018964	ENSVURG00010018999	ENSVURG00010019003 #20	ENSVURG00010019008 ##21	ENSVURG00010019015 #22	ENSVURG00010019020 #24	ENSVURG00010019031 #25	ENSVURG00010019037 #26	ENSVURG00010019052 #27	ENSVURG00010019059 #27	ENSVURG00010019063 #27	ENSVURG00010019080 #29	ENSVURG00010019132 #30	ENSVURG00010019143 #31	ENSVURG00010019160 #32	ENSVURG00010019170 #33	ENSVURG00010019181 #34	ENSVURG00010019211 #35	ENSVURG00010019215	ENSVURG00010019218 #36
Common wonbat	MODERN SPECIES	1190	ENSVURG00010017617	ENSVURG00010017645	ENSVURG00010017655	ENSVURG00010017662	ENSVURG00010017697	ENSVURG00010017869	ENSVURG00010017878	ENSVURG00010017888	ENSVURG00010017899	ENSVURG00010017907	ENSVURG00010017914	ENSVURG00010017926	ENSVURG00010017959	ENSVURG00010017970 #20	ENSVURG00010017990 ##21	ENSVURG00010018030 #22	ENSVURG00010018037 #24	ENSVURG00010018050 #25	ENSVURG00010018062 #26	ENSVURG00010018079 #27	ENSVURG00010018086 #27	ENSVURG00010018091 #27	ENSVURG00010018103 #29	ENSVURG00010018143 #30	ENSVURG00010018160 #31	ENSVURG00010018225 #32	ENSVURG00010018231 #32	ENSVURG00010018243 #33	ENSVURG00010018264 #34	ENSVURG00010018293 #35	ENSVURG00010018305
koala	MODERN SPECIES	25	ENSPCIG00000031472	SYNJ2 (ENSPCIG00000010179)	SERAC1 (ENSPCIG00000010190)	GTF2H5 (ENSPCIG00000036390)	TULP4 (ENSPCIG00000010196)	TMEM181 (ENSPCIG00000010199)	DYNLT1 (ENSPCIG00000010540)	ENSPCIG00000010547	EZR (ENSPCIG00000010897)	ENSPCIG00000010878	TAGAP (ENSPCIG00000010877)	ENSPCIG00000010874	FNDC1 (ENSPCIG00000029395)	SOD2 (ENSPCIG00000029402) #20	ENSPCIG00000029403 ##21	ACAT2 (ENSPCIG00000029405) #22	TCP1 (ENSPCIG00000029421) #24	MRPL18 (ENSPCIG00000003362) #25	PNLDC1 (ENSPCIG00000023412) #26	ENSPCIG00000007796 #27	MAS1 (ENSPCIG00000019932) #27	IGF2R (ENSPCIG00000019709) #29	SLC22A1 (ENSPCIG00000019702) #30	SLC22A2 (ENSPCIG00000004270) #31	SLC22A3 (ENSPCIG00000019698) #32	ENSPCIG00000019697 #33	MAP3K4 (ENSPCIG00000019688) #34	AGPAT4 (ENSPCIG00000019684) #35	ENSPCIG00000019683 #36	ENSPCIG00000022936 #36	ENSPCIG00000006520
Wallaby	MODERN SPECIES	2087																ACAT2 (ENSMEUG00000005954) #22	TCP1 (ENSMEUG00000005970) #24
Tasmanian devil	MODERN SPECIES	3	SNX9 (ENSSHAG00000018842)	SYNJ2 (ENSSHAG00000018881)	SERAC1 (ENSSHAG00000018902)	GTF2H5 (ENSSHAG00000023356)	TULP4 (ENSSHAG00000006707)	TMEM181 (ENSSHAG00000007483)	DYNLT1 (ENSSHAG00000008180)	ENSSHAG00000028670	EZR (ENSSHAG00000009483)	RSPH3 (ENSSHAG00000010979)	ENSSHAG00000011390	ENSSHAG00000028141	FNDC1 (ENSSHAG00000012329)	SOD2 (ENSSHAG00000025065) #20	ENSSHAG00000027733 ##21	ACAT2 (ENSSHAG00000024864) #22	MRPL18 (ENSSHAG00000029305) #25	TCP1 (ENSSHAG00000002185) #24	PNLDC1 (ENSSHAG00000015192) #26	ENSSHAG00000031794 #27	ENSSHAG00000026410 #27	ENSSHAG00000022705 #27	MAS1 (ENSSHAG00000001441) #27	IGF2R (ENSSHAG00000015828) #29	SLC22A1 (ENSSHAG00000016135) #30	SLC22A2 (ENSSHAG00000016344) #31	SLC22A3 (ENSSHAG00000016633) #32	ENSSHAG00000000112 #33	ENSSHAG00000021967	ENSSHAG00000004375 #34	ENSSHAG00000025577 #36
Opossum	MODERN SPECIES	1	SYNJ2 (ENSMODG00000007783)	SERAC1 (ENSMODG00000007736)	GTF2H5 (ENSMODG00000007676)	TULP4 (ENSMODG00000007674)	TMEM181 (ENSMODG00000007661)	ENSMODG00000007647	EZR (ENSMODG00000007642)	RSPH3 (ENSMODG00000007617)	ENSMODG00000043392	ENSMODG00000007592	ENSMODG00000023276	FNDC1 (ENSMODG00000007540)	ENSMODG00000043641	SOD2 (ENSMODG00000007521) #20	ENSMODG00000045208 ##21	ACAT2 (ENSMODG00000007156) #22	TCP1 (ENSMODG00000007478) #24	MRPL18 (ENSMODG00000007428) #25	PNLDC1 (ENSMODG00000007420) #26	ENSMODG00000007388 #27	ENSMODG00000023275 #27	MAS1 (ENSMODG00000007377) #27	ENSMODG00000048306	IGF2R (ENSMODG00000007100) #29	SLC22A1 (ENSMODG00000006918) #30	SLC22A2 (ENSMODG00000006806) #31	SLC22A3 (ENSMODG00000006771) #32	ENSMODG00000006692 #33	MAP3K4 (ENSMODG00000006594) #34	AGPAT4 (ENSMODG00000006531) #35	ENSMODG00000027665 #36
Platypus	MODERN SPECIES	11	ENSOANG00000041492	ENSOANG00000014619	ENSOANG00000038578	RGS17 (ENSOANG00000042607)	MTRF1L (ENSOANG00000037135)	FBXO5 (ENSOANG00000005309)	VIP (ENSOANG00000003593)	MYCT1 (ENSOANG00000042329)	ENSOANG00000046889 #36	ENSOANG00000047227 #36	ENSOANG00000041148	ENSOANG00000011163 #37	QKI (ENSOANG00000011161)	SOD2 (ENSOANG00000000632) #20	WTAP (ENSOANG00000038325) #21	ACAT2 (ENSOANG00000048813) #22	ENSOANG00000038861 #25	PNLDC1 (ENSOANG00000012199) #26	TCP1 (ENSOANG00000012198) #24	MAS1 (ENSOANG00000012996) #27	IGF2R (ENSOANG00000007296) #29	SLC22A2 (ENSOANG00000007295) #31	SLC22A3 (ENSOANG00000040412) #32	ENSOANG00000009543 #33	MAP3K4 (ENSOANG00000002832) #34	ENSOANG00000045573	CIAO3 (ENSOANG00000045666)	ENSOANG00000030491	ANTKMT (ENSOANG00000037019)	METRN (ENSOANG00000037561)	ENSOANG00000012967
Sauria	ANCESTRAL SPECIES	1	ENSGT01030000235099	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00950000186343	ENSGT00940000157330 #37
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.b #27	ENSGT01030000234639.A.a.c.b #27	ENSGT01030000234639.A.a.d #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.vb	ENSGT00940000160610.e	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.a #27	ENSGT01030000234639.A.a.c.b #27	ENSGT01030000234639.A.a.d #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.r #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.vb	ENSGT00940000160610.e	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.b #27	ENSGT01030000234639.A.a.c.a.a #27	ENSGT01030000234639.A.a.c.b #27	ENSGT01030000234639.A.a.d #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.r #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531.vb	ENSGT00940000160610.e	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00990000211929	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.b #27	ENSGT01030000234639.A.a.c.a.a #27	ENSGT01030000234639.A.a.c.b #27	ENSGT01030000234639.A.a.d #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.r #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35
Mainland tiger snake	MODERN SPECIES	70	SNX9 (ENSNSUG00000015876)	SYNJ2 (ENSNSUG00000015875)	SERAC1 (ENSNSUG00000015847)	GTF2H5 (ENSNSUG00000015844)	TULP4 (ENSNSUG00000015843)	ENSNSUG00000015840	DYNLT1 (ENSNSUG00000015838)	ENSNSUG00000015836	EZR (ENSNSUG00000015742)	RSPH3 (ENSNSUG00000015741)	FNDC1 (ENSNSUG00000015734)	ENSNSUG00000015731	ENSNSUG00000015730	SOD2 (ENSNSUG00000015729) #20	WTAP (ENSNSUG00000015728) #21	ACAT2 (ENSNSUG00000015727) #22	TCP1 (ENSNSUG00000015723) #24	MRPL18 (ENSNSUG00000015722) #25	ENSNSUG00000015720 #26	ENSNSUG00000015719 #27	ENSNSUG00000015718 #27	ENSNSUG00000015717 #27	IGF2R (ENSNSUG00000015715) #29	ENSNSUG00000015713 #31	ENSNSUG00000015712 #31	SLC22A3 (ENSNSUG00000015711) #32	ENSNSUG00000015529 #33	ENSNSUG00000015519	MAP3K4 (ENSNSUG00000015033) #34	AGPAT4 (ENSNSUG00000015028) #35	ENSNSUG00000015027
Eastern brown snake	MODERN SPECIES	26	SYNJ2 (ENSPTXG00000000127)	SERAC1 (ENSPTXG00000000188)	GTF2H5 (ENSPTXG00000000737)	TULP4 (ENSPTXG00000000740)	TMEM181 (ENSPTXG00000000759)	DYNLT1 (ENSPTXG00000001355)	ENSPTXG00000001360	EZR (ENSPTXG00000001372)	ENSPTXG00000001383	TAGAP (ENSPTXG00000001396)	FNDC1 (ENSPTXG00000001403)	ENSPTXG00000001491	SOD2 (ENSPTXG00000001492) #20	WTAP (ENSPTXG00000001493) #21	TCP1 (ENSPTXG00000001496) #24	ACAT2 (ENSPTXG00000001498) #22	MRPL18 (ENSPTXG00000001509) #25	PNLDC1 (ENSPTXG00000001515) #26	ENSPTXG00000001522 #27	ENSPTXG00000001525 #27	ENSPTXG00000001528 #27	IGF2R (ENSPTXG00000001694) #29	ENSPTXG00000007955 #31	ENSPTXG00000007957 #31	SLC22A3 (ENSPTXG00000007958) #32	ENSPTXG00000007960 #33	MAP3K4 (ENSPTXG00000007968) #34	ENSPTXG00000008478	AGPAT4 (ENSPTXG00000008479) #35	PRKN (ENSPTXG00000008480) #36	ENSPTXG00000008481
Blue-lipped sea krait	MODERN SPECIES	6198																ACAT2 (ENSLLTG00000018419) #22	TCP1 (ENSLLTG00000018420) #24	MRPL18 (ENSLLTG00000018423) #25
Indian cobra	MODERN SPECIES		SERAC1 (ENSNNAG00000000024)	GTF2H5 (ENSNNAG00000000020)	TULP4 (ENSNNAG00000000017)	TMEM181 (ENSNNAG00000000013)	ENSNNAG00000000010	ENSNNAG00000000008	ENSNNAG00000000005	ENSNNAG00000014627	EZR (ENSNNAG00000014514)	RSPH3 (ENSNNAG00000014424)	TAGAP (ENSNNAG00000014407)	FNDC1 (ENSNNAG00000014369)	ENSNNAG00000014347	SOD2 (ENSNNAG00000014338) #20	WTAP (ENSNNAG00000014291) #21	ACAT2 (ENSNNAG00000014276) #22	TCP1 (ENSNNAG00000014238) #24	MRPL18 (ENSNNAG00000014226) #25	PNLDC1 (ENSNNAG00000014137) #26	ENSNNAG00000014119 #27	ENSNNAG00000014108 #27	IGF2R (ENSNNAG00000013937) #29	ENSNNAG00000013902 #31	ENSNNAG00000013839 #31	SLC22A3 (ENSNNAG00000013742) #32	ENSNNAG00000013719 #33	ENSNNAG00000013701 #33	ENSNNAG00000013630 #33	ENSNNAG00000013607	MAP3K4 (ENSNNAG00000013454) #34	AGPAT4 (ENSNNAG00000013435) #35
Lizard	MODERN SPECIES		ENSACAG00000039211	SERAC1 (ENSACAG00000004912)	GTF2H5 (ENSACAG00000038602)	ENSACAG00000039617	TULP4 (ENSACAG00000004831)	ENSACAG00000026768	TMEM181 (ENSACAG00000004823)	DYNLT1 (ENSACAG00000004817)	SYTL3 (ENSACAG00000004780)	EZR (ENSACAG00000004653)	ENSACAG00000004605	TAGAP (ENSACAG00000004577)	FNDC1 (ENSACAG00000004553)	SOD2 (ENSACAG00000004516) #20	ENSACAG00000004478 #21	ACAT2 (ENSACAG00000004394) #22	ENSACAG00000041299	TCP1 (ENSACAG00000004253) #24	MRPL18 (ENSACAG00000004244) #25	ENSACAG00000043187	PNLDC1 (ENSACAG00000013667) #26	ENSACAG00000045067 #27	ENSACAG00000004224 #27	ENSACAG00000035532	IGF2R (ENSACAG00000003664) #29	ENSACAG00000003650 #31	ENSACAG00000003452 #31	SLC22A3 (ENSACAG00000003423) #32	ENSACAG00000003225 #33	ENSACAG00000044185	MAP3K4 (ENSACAG00000003094) #34
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172.t	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a.c.a.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Common wall lizard	MODERN SPECIES	11	SYNJ2 (ENSPMRG00000011034)	SERAC1 (ENSPMRG00000011061)	ENSPMRG00000011072	TULP4 (ENSPMRG00000000172)	TMEM181 (ENSPMRG00000000228)	DYNLT1 (ENSPMRG00000000328)	SYTL3 (ENSPMRG00000000357)	EZR (ENSPMRG00000000394)	ENSPMRG00000000427	TAGAP (ENSPMRG00000000468)	FNDC1 (ENSPMRG00000000529)	ENSPMRG00000000603	ENSPMRG00000000612	SOD2 (ENSPMRG00000000626) #20	WTAP (ENSPMRG00000000645) #21	ACAT2 (ENSPMRG00000000659) #22	TCP1 (ENSPMRG00000000681) #24	ENSPMRG00000000709 #25	PNLDC1 (ENSPMRG00000000755) #26	ENSPMRG00000000891 #27	IGF2R (ENSPMRG00000001320) #29	ENSPMRG00000002151 #31	ENSPMRG00000002157 #31	SLC22A3 (ENSPMRG00000002162) #32	ENSPMRG00000002175 #33	MAP3K4 (ENSPMRG00000002197) #34	ENSPMRG00000002214	AGPAT4 (ENSPMRG00000002221) #35	PRKN (ENSPMRG00000002228) #36	ENSPMRG00000002245	PACRG (ENSPMRG00000002251) #37
Argentine black and white tegu	MODERN SPECIES	2	ZDHHC14 (ENSSMRG00000022245)	SNX9 (ENSSMRG00000022244)	SYNJ2 (ENSSMRG00000022242)	SERAC1 (ENSSMRG00000022241)	GTF2H5 (ENSSMRG00000022240)	TULP4 (ENSSMRG00000022236)	TMEM181 (ENSSMRG00000022235)	DYNLT1 (ENSSMRG00000022234)	SYTL3 (ENSSMRG00000022233)	EZR (ENSSMRG00000022232)	ENSSMRG00000022231	TAGAP (ENSSMRG00000022230)	FNDC1 (ENSSMRG00000022228)	SOD2 (ENSSMRG00000022226) #20	WTAP (ENSSMRG00000022225) #21	ACAT2 (ENSSMRG00000022224) #22	TCP1 (ENSSMRG00000022221) #24	PNLDC1 (ENSSMRG00000022220) #26	ENSSMRG00000022218 #27	ENSSMRG00000022217	IGF2R (ENSSMRG00000022216) #29	ENSSMRG00000022215 #31	ENSSMRG00000022214 #31	SLC22A3 (ENSSMRG00000022213) #32	ENSSMRG00000022205 #33	MAP3K4 (ENSSMRG00000022204) #34	AGPAT4 (ENSSMRG00000022202) #35	PRKN (ENSSMRG00000022201) #36	ENSSMRG00000022199	PACRG (ENSSMRG00000022198) #37	QKI (ENSSMRG00000022196)
tuatara	MODERN SPECIES	319														SOD2 (ENSSPUG00000004799) #20	WTAP (ENSSPUG00000004783) #21	ACAT2 (ENSSPUG00000004776) #22	TCP1 (ENSSPUG00000004742) #24	MRPL18 (ENSSPUG00000004732) #25	PNLDC1 (ENSSPUG00000004627) #26	ENSSPUG00000004594	ENSSPUG00000004560 #27	ENSSPUG00000004551 #27	IGF2R (ENSSPUG00000004409) #29	ENSSPUG00000004340 #31	ENSSPUG00000004297 #31	SLC22A3 (ENSSPUG00000004269) #32	ENSSPUG00000003552 #33	ENSSPUG00000003415 #34	ENSSPUG00000003402	ENSSPUG00000003393	ENSSPUG00000003382
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b #33	ENSGT00940000155208.v #33	ENSGT01030000234985	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35
Aves	ANCESTRAL SPECIES	12	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b #33	ENSGT00940000155208.v #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.a.a #33	ENSGT00940000155208.u.b.b #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.a.a #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Anatidae	ANCESTRAL SPECIES		ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.b.b #33	ENSGT00940000155208.u.b.a.a.b #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Duck	MODERN SPECIES	21	SAMD5 (ENSAPLG00000016694)	STXBP5 (ENSAPLG00000014903)	ENSAPLG00000028353	RAB32 (ENSAPLG00000029671)	ENSAPLG00000014495	ENSAPLG00000026243	SHPRH (ENSAPLG00000014248)	FBXO30 (ENSAPLG00000014234)	EPM2A (ENSAPLG00000027607)	ENSAPLG00000004522	ENSAPLG00000021478	STX11 (ENSAPLG00000000719)	ENSAPLG00000005370	SOD2 (ENSAPLG00000005614) #20	WTAP (ENSAPLG00000024378) #21	ACAT2 (ENSAPLG00000006048) #22	TCP1 (ENSAPLG00000006259) #24	MRPL18 (ENSAPLG00000006870) #25	PNLDC1 (ENSAPLG00000007014) #26	MAS1 (ENSAPLG00000000729) #27	IGF2R (ENSAPLG00000007173) #29	ENSAPLG00000007770 #31	ENSAPLG00000008773 #31	SLC22A3 (ENSAPLG00000009972) #32	ENSAPLG00000010099 #33	ENSAPLG00000025814	MAP3K4 (ENSAPLG00000011460) #34	AGPAT4 (ENSAPLG00000012386) #35	PRKN (ENSAPLG00000012643) #36	PACRG (ENSAPLG00000010267) #37	QKI (ENSAPLG00000010080)
Pink-footed goose	MODERN SPECIES	2	SASH1 (ENSABRG00000009323)	SAMD5 (ENSABRG00000009448)	STXBP5 (ENSABRG00000009475)	ADGB (ENSABRG00000009564)	RAB32 (ENSABRG00000009599)	GRM1 (ENSABRG00000009616)	SHPRH (ENSABRG00000009648)	FBXO30 (ENSABRG00000009689)	EPM2A (ENSABRG00000009692)	UTRN (ENSABRG00000010515)	STX11 (ENSABRG00000017324)	SF3B5 (ENSABRG00000017329)	FNDC1 (ENSABRG00000017335)	SOD2 (ENSABRG00000017350) #20	WTAP (ENSABRG00000017356) #21	ACAT2 (ENSABRG00000017364) #22	TCP1 (ENSABRG00000017371) #24	MRPL18 (ENSABRG00000017379) #25	PNLDC1 (ENSABRG00000017393) #26	MAS1 (ENSABRG00000017400) #27	IGF2R (ENSABRG00000017564) #29	ENSABRG00000018733 #31	ENSABRG00000018744 #31	SLC22A3 (ENSABRG00000018768) #32	ENSABRG00000018776 #33	ENSABRG00000018814 #33
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.a.a #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b
Japanese quail	MODERN SPECIES	21	SASH1 (ENSCJPG00005005963)	SAMD5 (ENSCJPG00005005947)	STXBP5 (ENSCJPG00005005911)	ADGB (ENSCJPG00005005864)	RAB32 (ENSCJPG00005005739)	GRM1 (ENSCJPG00005005684)	SHPRH (ENSCJPG00005005637)	FBXO30 (ENSCJPG00005005635)	EPM2A (ENSCJPG00005005632)	UTRN (ENSCJPG00005005454)	STX11 (ENSCJPG00005005444)	SF3B5 (ENSCJPG00005005441)	ENSCJPG00005005438	FNDC1 (ENSCJPG00005005370)	WTAP (ENSCJPG00005005347) #21	ACAT2 (ENSCJPG00005005340) #22	TCP1 (ENSCJPG00005005332) #24	MRPL18 (ENSCJPG00005005329) #25	PNLDC1 (ENSCJPG00005005315) #26	MAS1 (ENSCJPG00005005311) #27	IGF2R (ENSCJPG00005004540) #29	ENSCJPG00005004536 #31	ENSCJPG00005004522 #31	SLC22A3 (ENSCJPG00005004486) #32	ENSCJPG00005004448 #33	ENSCJPG00005004435 #33	MAP3K4 (ENSCJPG00005004431) #34	AGPAT4 (ENSCJPG00005004426) #35	PRKN (ENSCJPG00005004407) #36	PACRG (ENSCJPG00005004398) #37	ENSCJPG00005004387
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.a.a #33	ENSGT00940000155208.u.b.b #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Chicken	MODERN SPECIES	22	UST (ENSGALG00010005453)	SASH1 (ENSGALG00010005442)	STXBP5 (ENSGALG00010005411)	ADGB (ENSGALG00010005391)	RAB32 (ENSGALG00010005382)	GRM1 (ENSGALG00010005371)	SHPRH (ENSGALG00010005358)	FBXO30 (ENSGALG00010005346)	EPM2A (ENSGALG00010007207)	UTRN (ENSGALG00010005045)	STX11 (ENSGALG00010005016)	SF3B5 (ENSGALG00010006627)	FNDC1 (ENSGALG00010004980)	SOD2 (ENSGALG00010006454) #20	WTAP (ENSGALG00010004494) #21	ACAT2 (ENSGALG00010004446) #22	TCP1 (ENSGALG00010004434) #24	MRPL18 (ENSGALG00010004424) #25	PNLDC1 (ENSGALG00010004390) #26	MAS1 (ENSGALG00010006448) #27	IGF2R (ENSGALG00010006351) #29	ENSGALG00010006339 #31	ENSGALG00010006318 #31	SLC22A3 (ENSGALG00010006293) #32	PLG (ENSGALG00010007226) #33	ENSGALG00010006269 #33	MAP3K4 (ENSGALG00010006260) #34	AGPAT4 (ENSGALG00010006227) #35	PRKN (ENSGALG00010006183) #36	PACRG (ENSGALG00010006068) #37	QKI (ENSGALG00010006041)
Turkey	MODERN SPECIES	11	SASH1 (ENSMGAG00000012577)	SAMD5 (ENSMGAG00000022046)	STXBP5 (ENSMGAG00000012565)	ADGB (ENSMGAG00000012559)	RAB32 (ENSMGAG00000012555)	GRM1 (ENSMGAG00000012544)	SHPRH (ENSMGAG00000012537)	FBXO30 (ENSMGAG00000012533)	EPM2A (ENSMGAG00000012531)	UTRN (ENSMGAG00000012513)	STX11 (ENSMGAG00000015852)	SF3B5 (ENSMGAG00000015849)	ENSMGAG00000012510	SOD2 (ENSMGAG00000012503) #20	ENSMGAG00000012496 #21	ACAT2 (ENSMGAG00000012491) #22	TCP1 (ENSMGAG00000012484) #24	MRPL18 (ENSMGAG00000012480) #25	PNLDC1 (ENSMGAG00000012470) #26	MAS1 (ENSMGAG00000015847) #27	IGF2R (ENSMGAG00000012441) #29	ENSMGAG00000012426 #31	ENSMGAG00000012409 #31	SLC22A3 (ENSMGAG00000012396) #32	ENSMGAG00000012373 #33	ENSMGAG00000022747 #33	MAP3K4 (ENSMGAG00000012360) #34	AGPAT4 (ENSMGAG00000012346) #35	ENSMGAG00000016769 #36	ENSMGAG00000018125 #37	ENSMGAG00000022941
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.b #33	ENSGT00940000155208.u.b.b #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000156778	ENSGT00510000048701	ENSGT00950000182906.b.a	ENSGT00390000014904	ENSGT00940000162477	ENSGT01030000234595.A.b	ENSGT00730000111123	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b	ENSGT00390000013215	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000155208.u.b.a.b #33	ENSGT00940000155208.u.b.b #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37
Golden eagle	MODERN SPECIES	24	SAMD5 (ENSACCG00020005315)	STXBP5 (ENSACCG00020005265)	ENSACCG00020005231	RAB32 (ENSACCG00020005221)	GRM1 (ENSACCG00020005198)	SHPRH (ENSACCG00020005151)	FBXO30 (ENSACCG00020005136)	EPM2A (ENSACCG00020005126)	ENSACCG00020005111	ENSACCG00020005092	STX11 (ENSACCG00020005086)	SF3B5 (ENSACCG00020005080)	FNDC1 (ENSACCG00020005050)	SOD2 (ENSACCG00020005017) #20	WTAP (ENSACCG00020005003) #21	ACAT2 (ENSACCG00020004990) #22	TCP1 (ENSACCG00020004976) #24	MRPL18 (ENSACCG00020004966) #25	PNLDC1 (ENSACCG00020004951) #26	MAS1 (ENSACCG00020004937) #27	IGF2R (ENSACCG00020003984) #29	ENSACCG00020001849 #31	ENSACCG00020001825 #31	SLC22A3 (ENSACCG00020001790) #32	ENSACCG00020001718 #33	MAP3K4 (ENSACCG00020001556) #34	AGPAT4 (ENSACCG00020001461) #35	PRKN (ENSACCG00020001423) #36	PACRG (ENSACCG00020001381) #37	QKI (ENSACCG00020001360)	PDE10A (ENSACCG00020001331)
Kakapo	MODERN SPECIES	2	STXBP5 (ENSSHBG00005018757)	ADGB (ENSSHBG00005000604)	RAB32 (ENSSHBG00005000606)	GRM1 (ENSSHBG00005010634)	SHPRH (ENSSHBG00005010869)	FBXO30 (ENSSHBG00005011024)	EPM2A (ENSSHBG00005011045)	ENSSHBG00005011130	ENSSHBG00005011238	ENSSHBG00005011277	STX11 (ENSSHBG00005011291)	SF3B5 (ENSSHBG00005011304)	ENSSHBG00005011358	SOD2 (ENSSHBG00005011403) #20	WTAP (ENSSHBG00005011419) #21	ACAT2 (ENSSHBG00005011447) #22	TCP1 (ENSSHBG00005011488) #24	MRPL18 (ENSSHBG00005011525) #25	PNLDC1 (ENSSHBG00005011555) #26	MAS1 (ENSSHBG00005011587) #27	IGF2R (ENSSHBG00005013283) #29	SLC22A2 (ENSSHBG00005020076) #31	SLC22A3 (ENSSHBG00005020081) #32	ENSSHBG00005020135 #33	ENSSHBG00005020334 #33	ENSSHBG00005020337 #33	ENSSHBG00005020341 #33	AGPAT4 (ENSSHBG00005020401) #35	PRKN (ENSSHBG00005020412) #36	PACRG (ENSSHBG00005020428) #37	QKI (ENSSHBG00005020433)
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Great tit	MODERN SPECIES	22	ZBTB2 (ENSPMJG00000009064)	AKAP12 (ENSPMJG00000009097)	MTHFD1L (ENSPMJG00000009104)	PLEKHG1 (ENSPMJG00000009185)	IYD (ENSPMJG00000009205)	PPP1R14C (ENSPMJG00000009207)	LRP11 (ENSPMJG00000009223)	PCMT1 (ENSPMJG00000009224)	NUP43 (ENSPMJG00000009226)	LATS1 (ENSPMJG00000009227)	KATNA1 (ENSPMJG00000009228)	GINM1 (ENSPMJG00000009292)	ENSPMJG00000009355	SOD2 (ENSPMJG00000009361) #20	WTAP (ENSPMJG00000009363) #21	ACAT2 (ENSPMJG00000009365) #22	TCP1 (ENSPMJG00000009367) #24	MRPL18 (ENSPMJG00000009371) #25	PNLDC1 (ENSPMJG00000009374) #26	MAS1 (ENSPMJG00000009376) #27	IGF2R (ENSPMJG00000009420) #29	SLC22A2 (ENSPMJG00000009430) #31	ENSPMJG00000009431 #30	SLC22A3 (ENSPMJG00000009432) #32	ENSPMJG00000009433 #33	AHI1 (ENSPMJG00000009436)	MYB (ENSPMJG00000009490)	HBS1L (ENSPMJG00000009491)	ALDH8A1 (ENSPMJG00000009498)	ENSPMJG00000009611	SGK1 (ENSPMJG00000009684)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Flycatcher	MODERN SPECIES	21	ZBTB2 (ENSFALG00000027296)	AKAP12 (ENSFALG00000012244)	MTHFD1L (ENSFALG00000012200)	PLEKHG1 (ENSFALG00000012185)	IYD (ENSFALG00000012182)	ENSFALG00000023388	LRP11 (ENSFALG00000023095)	PCMT1 (ENSFALG00000026300)	NUP43 (ENSFALG00000012166)	LATS1 (ENSFALG00000012161)	KATNA1 (ENSFALG00000012149)	GINM1 (ENSFALG00000012135)	ENSFALG00000012125	ENSFALG00000026104 #20	ENSFALG00000012108 #21	ACAT2 (ENSFALG00000012103) #22	TCP1 (ENSFALG00000012096) #24	MRPL18 (ENSFALG00000012086) #25	PNLDC1 (ENSFALG00000012081) #26	MAS1 (ENSFALG00000015338) #27	IGF2R (ENSFALG00000011999) #29	ENSFALG00000011977 #31	ENSFALG00000011966 #32	ENSFALG00000011959 #33	AHI1 (ENSFALG00000011949)	MYB (ENSFALG00000011914)	ENSFALG00000023919	HBS1L (ENSFALG00000011898)	ALDH8A1 (ENSFALG00000011892)	SGK1 (ENSFALG00000011887)	SLC2A12 (ENSFALG00000011874)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000158401	ENSGT00730000111244	ENSGT00940000157477	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00940000161275	ENSGT00950000183032.B.b.b	ENSGT00390000004803	ENSGT00940000157684	ENSGT00940000156638	ENSGT00390000008373	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT01030000234639.A.a #27	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000162065 #30	ENSGT00940000160810 #32	ENSGT00940000155208.u.a #33	ENSGT00940000156509	ENSGT00940000156248.wc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726
Zebra finch	MODERN SPECIES	23	ZBTB2 (ENSTGUG00000020410)	AKAP12 (ENSTGUG00000029620)	MTHFD1L (ENSTGUG00000011286)	PLEKHG1 (ENSTGUG00000011318)	IYD (ENSTGUG00000011323)	PPP1R14C (ENSTGUG00000020746)	LRP11 (ENSTGUG00000011328)	PCMT1 (ENSTGUG00000011332)	NUP43 (ENSTGUG00000011345)	LATS1 (ENSTGUG00000011347)	KATNA1 (ENSTGUG00000011351)	GINM1 (ENSTGUG00000011370)	ENSTGUG00000011376	SOD2 (ENSTGUG00000024079) #20	WTAP (ENSTGUG00000011389) #21	ACAT2 (ENSTGUG00000011404) #22	TCP1 (ENSTGUG00000011409) #24	MRPL18 (ENSTGUG00000011414) #25	PNLDC1 (ENSTGUG00000011418) #26	MAS1 (ENSTGUG00000011427) #27	IGF2R (ENSTGUG00000011428) #29	SLC22A2 (ENSTGUG00000011460) #31	SLC22A3 (ENSTGUG00000011470) #32	ENSTGUG00000011476 #33	AHI1 (ENSTGUG00000011488)	MYB (ENSTGUG00000011495)	HBS1L (ENSTGUG00000011507)	ALDH8A1 (ENSTGUG00000029181)	SGK1 (ENSTGUG00000011521)	SLC2A12 (ENSTGUG00000011539)	TBPL1 (ENSTGUG00000011544)
Common canary	MODERN SPECIES	31	ZBTB2 (ENSSCAG00000011626)	AKAP12 (ENSSCAG00000011615)	MTHFD1L (ENSSCAG00000011453)	PLEKHG1 (ENSSCAG00000011409)	IYD (ENSSCAG00000011402)	PPP1R14C (ENSSCAG00000011401)	LRP11 (ENSSCAG00000011398)	PCMT1 (ENSSCAG00000011396)	NUP43 (ENSSCAG00000011370)	LATS1 (ENSSCAG00000011352)	KATNA1 (ENSSCAG00000011333)	GINM1 (ENSSCAG00000011323)	FNDC1 (ENSSCAG00000011311)	SOD2 (ENSSCAG00000011298) #20	WTAP (ENSSCAG00000011282) #21	ACAT2 (ENSSCAG00000011272) #22	TCP1 (ENSSCAG00000011263) #24	MRPL18 (ENSSCAG00000011255) #25	PNLDC1 (ENSSCAG00000011248) #26	MAS1 (ENSSCAG00000011245) #27	IGF2R (ENSSCAG00000011232) #29	SLC22A2 (ENSSCAG00000011223) #31	ENSSCAG00000011220 #30	SLC22A3 (ENSSCAG00000011215) #32	ENSSCAG00000011202 #33	AHI1 (ENSSCAG00000011192)	MYB (ENSSCAG00000011107)	HBS1L (ENSSCAG00000011066)	ALDH8A1 (ENSSCAG00000011057)	ENSSCAG00000011054	ENSSCAG00000011048
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	95	ZBTB2 (ENSGFOG00000001524)	AKAP12 (ENSGFOG00000001527)	MTHFD1L (ENSGFOG00000001800)	PLEKHG1 (ENSGFOG00000005518)	IYD (ENSGFOG00000005534)	LRP11 (ENSGFOG00000005546)	PCMT1 (ENSGFOG00000005555)	NUP43 (ENSGFOG00000005569)	LATS1 (ENSGFOG00000005589)	KATNA1 (ENSGFOG00000005594)	GINM1 (ENSGFOG00000005603)	ENSGFOG00000005628	SOD2 (ENSGFOG00000005682) #20	WTAP (ENSGFOG00000005775) #21	ENSGFOG00000005781 #22	ENSGFOG00000005792 #22	TCP1 (ENSGFOG00000005797) #24	MRPL18 (ENSGFOG00000005807) #25	PNLDC1 (ENSGFOG00000005813) #26	MAS1 (ENSGFOG00000005827) #27	IGF2R (ENSGFOG00000005933) #29	ENSGFOG00000007414 #30	ENSGFOG00000007423 #31	ENSGFOG00000007439 #31	SLC22A3 (ENSGFOG00000007447) #32	ENSGFOG00000007471 #33	AHI1 (ENSGFOG00000007569)	MYB (ENSGFOG00000007618)	HBS1L (ENSGFOG00000008080)	ALDH8A1 (ENSGFOG00000008244)	SGK1 (ENSGFOG00000008254)
Medium ground finch	MODERN SPECIES	95	RMND1 (ENSGFOG00000001514)	ZBTB2 (ENSGFOG00000001524)	AKAP12 (ENSGFOG00000001527)	MTHFD1L (ENSGFOG00000001800)	PLEKHG1 (ENSGFOG00000005518)	IYD (ENSGFOG00000005534)	LRP11 (ENSGFOG00000005546)	PCMT1 (ENSGFOG00000005555)	NUP43 (ENSGFOG00000005569)	LATS1 (ENSGFOG00000005589)	KATNA1 (ENSGFOG00000005594)	GINM1 (ENSGFOG00000005603)	ENSGFOG00000005628	SOD2 (ENSGFOG00000005682) #20	WTAP (ENSGFOG00000005775) #21	ENSGFOG00000005781 #22	ENSGFOG00000005792 #22	TCP1 (ENSGFOG00000005797) #24	MRPL18 (ENSGFOG00000005807) #25	PNLDC1 (ENSGFOG00000005813) #26	MAS1 (ENSGFOG00000005827) #27	IGF2R (ENSGFOG00000005933) #29	ENSGFOG00000007414 #30	ENSGFOG00000007423 #31	ENSGFOG00000007439 #31	SLC22A3 (ENSGFOG00000007447) #32	ENSGFOG00000007471 #33	AHI1 (ENSGFOG00000007569)	MYB (ENSGFOG00000007618)	HBS1L (ENSGFOG00000008080)	ALDH8A1 (ENSGFOG00000008244)
African ostrich	MODERN SPECIES	1068											UTRN (ENSSCUG00000017679)	STX11 (ENSSCUG00000018100)	FNDC1 (ENSSCUG00000018110)	SOD2 (ENSSCUG00000018122) #20	WTAP (ENSSCUG00000018124) #21	ACAT2 (ENSSCUG00000018126) #22	TCP1 (ENSSCUG00000018131) #24	MRPL18 (ENSSCUG00000018135) #25	PNLDC1 (ENSSCUG00000018136) #26	ENSSCUG00000018139 #27	MAS1 (ENSSCUG00000018141) #27	IGF2R (ENSSCUG00000018182) #29	ENSSCUG00000018370 #31	ENSSCUG00000018372 #31	SLC22A3 (ENSSCUG00000018373) #32	ENSSCUG00000018374 #33	ENSSCUG00000018375 #33	ENSSCUG00000018376 #33	MAP3K4 (ENSSCUG00000018427) #34	ENSSCUG00000018465	AGPAT4 (ENSSCUG00000018471) #35
Australian saltwater crocodile	MODERN SPECIES	60	SYNJ2 (ENSCPRG00005017886)	SERAC1 (ENSCPRG00005017880)	GTF2H5 (ENSCPRG00005017877)	TULP4 (ENSCPRG00005017871)	TMEM181 (ENSCPRG00005017851)	DYNLT1 (ENSCPRG00005017844)	ENSCPRG00005017839	ENSCPRG00005017836	EZR (ENSCPRG00005017816)	RSPH3 (ENSCPRG00005017811)	TAGAP (ENSCPRG00005017800)	ENSCPRG00005017789	FNDC1 (ENSCPRG00005017781)	SOD2 (ENSCPRG00005017772) #20	WTAP (ENSCPRG00005017767) #21	ACAT2 (ENSCPRG00005017764) #22	TCP1 (ENSCPRG00005017758) #24	MRPL18 (ENSCPRG00005017753) #25	PNLDC1 (ENSCPRG00005017732) #26	MAS1 (ENSCPRG00005017726) #27	IGF2R (ENSCPRG00005017718) #29	ENSCPRG00005017706 #31	ENSCPRG00005017702 #31	SLC22A3 (ENSCPRG00005017674) #32	ENSCPRG00005017664 #33	ENSCPRG00005017662 #33	ENSCPRG00005017657 #33	ENSCPRG00005017655	MAP3K4 (ENSCPRG00005017632) #34	ENSCPRG00005017627	AGPAT4 (ENSCPRG00005017619) #35
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208 #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.s #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Emydidae	ANCESTRAL SPECIES		ENSGT00940000156483	ENSGT00940000156557	ENSGT00940000160715	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.s #33	ENSGT00880000138034 #34	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877	ENSGT00940000156543
painted turtle	MODERN SPECIES	2409																ACAT2 (ENSCPBG00000004088) #22	TCP1 (ENSCPBG00000004064) #24	MRPL18 (ENSCPBG00000004059) #25	PNLDC1 (ENSCPBG00000004050) #26	IGF2R (ENSCPBG00000002366) #29	ENSCPBG00000001937 #31	ENSCPBG00000001916 #31	SLC22A3 (ENSCPBG00000001892) #32	ENSCPBG00000001033 #33	MAP3K4 (ENSCPBG00000000806) #34	AGPAT4 (ENSCPBG00000000721) #35	ENSCPBG00000000680	ENSCPBG00000000631 #36	ENSCPBG00000000618	CA10 (ENSCPBG00000000583)	UTP18 (ENSCPBG00000000512)
Three-toed box turtle	MODERN SPECIES	31	ZDHHC14 (ENSTMTG00000001723)	SNX9 (ENSTMTG00000001706)	SYNJ2 (ENSTMTG00000001469)	SERAC1 (ENSTMTG00000001418)	GTF2H5 (ENSTMTG00000001408)	TULP4 (ENSTMTG00000001394)	TMEM181 (ENSTMTG00000001104)	DYNLT1 (ENSTMTG00000001026)	SYTL3 (ENSTMTG00000001016)	EZR (ENSTMTG00000000998)	RSPH3 (ENSTMTG00000000966)	TAGAP (ENSTMTG00000000916)	FNDC1 (ENSTMTG00000000878)	SOD2 (ENSTMTG00000000856) #20	WTAP (ENSTMTG00000000840) #21	ACAT2 (ENSTMTG00000000811) #22	TCP1 (ENSTMTG00000000776) #24	MRPL18 (ENSTMTG00000000765) #25	PNLDC1 (ENSTMTG00000000753) #26	IGF2R (ENSTMTG00000000723) #29	ENSTMTG00000000699 #31	ENSTMTG00000000691 #31	SLC22A3 (ENSTMTG00000000668) #32	ENSTMTG00000000636 #33	MAP3K4 (ENSTMTG00000000543) #34	AGPAT4 (ENSTMTG00000000495) #35	ENSTMTG00000000469 #36	ENSTMTG00000000447 #36	ENSTMTG00000000439	ENSTMTG00000000424 #36	PACRG (ENSTMTG00000000409) #37
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000156557	ENSGT00940000179662	ENSGT00940000160715.i	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000154531	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000006394 #25	ENSGT00940000153167.A.a #26	ENSGT00390000013943 #29	ENSGT00940000155089.h #31	ENSGT00940000155089.g #31	ENSGT00940000160810 #32	ENSGT00940000155208.s #33	ENSGT00880000138034 #34	ENSGT01030000234985	ENSGT00950000182836.b.b.b.b #35	ENSGT00390000011034 #36	ENSGT00940000157330 #37	ENSGT00940000155310.b	ENSGT00390000009877
Abingdon island giant tortoise	MODERN SPECIES	260													FNDC1 (ENSCABG00000022586)	SOD2 (ENSCABG00000022582) #20	WTAP (ENSCABG00000022575) #21	ACAT2 (ENSCABG00000022573) #22	TCP1 (ENSCABG00000022555) #24	ENSCABG00000022550	ENSCABG00000022547	MRPL18 (ENSCABG00000022545) #25
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005020455	SYNJ2 (ENSGEVG00005020460)	SERAC1 (ENSGEVG00005020467)	GTF2H5 (ENSGEVG00005020471)	TULP4 (ENSGEVG00005020475)	TMEM181 (ENSGEVG00005020499)	DYNLT1 (ENSGEVG00005020562)	SYTL3 (ENSGEVG00005020566)	EZR (ENSGEVG00005020577)	RSPH3 (ENSGEVG00005020587)	ENSGEVG00005020591	TAGAP (ENSGEVG00005020595)	FNDC1 (ENSGEVG00005020604)	SOD2 (ENSGEVG00005020614) #20	WTAP (ENSGEVG00005020617) #21	ACAT2 (ENSGEVG00005020622) #22	TCP1 (ENSGEVG00005020630) #24	MRPL18 (ENSGEVG00005020637) #25	PNLDC1 (ENSGEVG00005020642) #26	IGF2R (ENSGEVG00005020730) #29	ENSGEVG00005020912 #31	ENSGEVG00005020924 #31	ENSGEVG00005020929 #32	ENSGEVG00005020932 #32	ENSGEVG00005020936 #33	MAP3K4 (ENSGEVG00005020957) #34	ENSGEVG00005020964	AGPAT4 (ENSGEVG00005020966) #35	ENSGEVG00005020970 #36	PRKN (ENSGEVG00005009001) #36	PACRG (ENSGEVG00005009052) #37
Chinese turtle	MODERN SPECIES	461	ENSPSIG00000010386	SNX9 (ENSPSIG00000011194)	SYNJ2 (ENSPSIG00000014659)	SERAC1 (ENSPSIG00000016316)	GTF2H5 (ENSPSIG00000017396)	TULP4 (ENSPSIG00000017426)	TMEM181 (ENSPSIG00000017537)	DYNLT1 (ENSPSIG00000017633)	SYTL3 (ENSPSIG00000017651)	EZR (ENSPSIG00000017922)	RSPH3 (ENSPSIG00000007028)	TAGAP (ENSPSIG00000007340)	FNDC1 (ENSPSIG00000007390)	SOD2 (ENSPSIG00000007847) #20	WTAP (ENSPSIG00000008684) #21	ACAT2 (ENSPSIG00000008840) #22	TCP1 (ENSPSIG00000010001) #24	ENSPSIG00000000127	MRPL18 (ENSPSIG00000010990) #25	PNLDC1 (ENSPSIG00000011419) #26	IGF2R (ENSPSIG00000011476) #29	ENSPSIG00000015704 #31	ENSPSIG00000015715 #31	ENSPSIG00000016093 #31	SLC22A3 (ENSPSIG00000016587) #32	ENSPSIG00000017202 #33	MAP3K4 (ENSPSIG00000017964) #34	AGPAT4 (ENSPSIG00000005665) #35	ENSPSIG00000005683 #36	ENSPSIG00000005688 #36	ENSPSIG00000000131
Anura	ANCESTRAL SPECIES	63	ENSGT00390000018900	ENSGT00390000004799.c	ENSGT00390000005861	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766	ENSGT00940000156992	ENSGT00940000160590	ENSGT00940000156546	ENSGT00390000016158	ENSGT00730000111005	ENSGT00940000162752	ENSGT00940000156258	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00390000013943 #29	ENSGT00940000155089 #31	ENSGT01090000260098.A	ENSGT00390000011342	ENSGT00940000155621	ENSGT00940000158236	ENSGT00940000155393.d	ENSGT00940000155683	ENSGT00530000063692.b	ENSGT00950000183154.a	ENSGT00390000011642	ENSGT00940000154481.a.b	ENSGT00940000158133	ENSGT00390000012924.a
Leishan spiny toad	MODERN SPECIES	7	C6orf120 (ENSLLEG00000022689)	WDR27 (ENSLLEG00000022789)	ENSLLEG00000023793	ENSLLEG00000023816	THBS2 (ENSLLEG00000023860) #7	ENSLLEG00000024296	ENSLLEG00000024309	ENSLLEG00000024322	DPY30 (ENSLLEG00000024338)	PSEN2 (ENSLLEG00000024395)	MEMO1 (ENSLLEG00000024743)	ENSLLEG00000024976	SRD5A2 (ENSLLEG00000025015)	SOD2 (ENSLLEG00000005025) #20	WTAP (ENSLLEG00000005114) #21	ACAT2 (ENSLLEG00000005204) #22	TCP1 (ENSLLEG00000005309) #24	ENSLLEG00000006165	HEATR5B (ENSLLEG00000006495)	ENSLLEG00000006645	ENSLLEG00000006794	ENSLLEG00000006803	ENSLLEG00000006822	ENSLLEG00000006854	ARG1 (ENSLLEG00000006888)	MED23 (ENSLLEG00000007103)	ENPP3 (ENSLLEG00000007716)	ENPP1 (ENSLLEG00000008096)	ENSLLEG00000008179	CCN2 (ENSLLEG00000008251)	ENSLLEG00000008629
Frog	MODERN SPECIES	5	arv1 (ENSXETG00000026359)	fam89a (ENSXETG00000039518)	vit (ENSXETG00000022285)	opn6a (ENSXETG00000022282)	akap12 (ENSXETG00000037915)	mthfd1l (ENSXETG00000013956)	plekhg1 (ENSXETG00000007619)	iyd (ENSXETG00000011383)	hnrnpu (ENSXETG00000011386)	desi2 (ENSXETG00000045919)	ttll2 (ENSXETG00000027373)	spast (ENSXETG00000011392)	fndc1 (ENSXETG00000035120)	sod2 (ENSXETG00000021180) #20	wtap (ENSXETG00000021175) #21	acat2 (ENSXETG00000021174) #22	tcp1 (ENSXETG00000038604) #24	igf2r (ENSXETG00000021138) #29	slc22a2 (ENSXETG00000033727) #31	gje1 (ENSXETG00000049272)	adgrg6 (ENSXETG00000030163)	vta1 (ENSXETG00000021109)	oprm1 (ENSXETG00000041984)	ENSXETG00000049101	rgs17 (ENSXETG00000042465)	sos1 (ENSXETG00000008386)	rdh13 (ENSXETG00000008385)	slc30a6 (ENSXETG00000008384)	edaradd (ENSXETG00000032415)	riox1 (ENSXETG00000032839)	ENSXETG00000043039
Coelacanth	MODERN SPECIES	650													SOD2 (ENSLACG00000015527) #20	WTAP (ENSLACG00000015331) #21	ENSLACG00000015202	ACAT2 (ENSLACG00000014979) #22	TCP1 (ENSLACG00000014807) #24	ENSLACG00000014342	STX11 (ENSLACG00000014184)	ENSLACG00000011211	ENSLACG00000010026	ENSLACG00000007079	ENSLACG00000005993
Actinopterygii	ANCESTRAL SPECIES	69							ENSGT00940000156034.a	ENSGT00940000167198	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a	ENSGT00940000167949	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726
Reedfish	MODERN SPECIES	6	FERMT1 (ENSECRG00000016966)	pak5 (ENSECRG00000017013)	LAMP5 (ENSECRG00000017058)	ENSECRG00000017078	PLCB4 (ENSECRG00000017132)	PLCB1 (ENSECRG00000011416)	hao1 (ENSECRG00000011686)	enpp1 (ENSECRG00000011769)	ENSECRG00000011803	ENSECRG00000011818	ezra (ENSECRG00000011838)	rsph3 (ENSECRG00000011873)	tagapb (ENSECRG00000011888)	sod2 (ENSECRG00000011913) #20	wtap (ENSECRG00000011932) #21	acat2 (ENSECRG00000011958) #22	tcp1 (ENSECRG00000011980) #24	PLEKHG1 (ENSECRG00000012027)	iyd (ENSECRG00000012047)	ppp1r14c (ENSECRG00000012056)	MAP7 (ENSECRG00000012118)	ENSECRG00000012212	BCLAF1 (ENSECRG00000012238)	armc1l (ENSECRG00000012261)	mtfr2 (ENSECRG00000012286)	PDE7B (ENSECRG00000012364)	ahi1 (ENSECRG00000012493)	myb (ENSECRG00000012557)	hbs1l (ENSECRG00000012621)	aldh8a1 (ENSECRG00000012650)	NHSL1 (ENSECRG00000012718)
Neopterygii	ANCESTRAL SPECIES	88												ENSGT00940000155086.A	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a	ENSGT00940000167949	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726
Spotted gar	MODERN SPECIES	647	GRM1 (ENSLOCG00000016149)	SHPRH (ENSLOCG00000016153)	ENSLOCG00000016156	fbxo30a (ENSLOCG00000016157)	EPM2A (ENSLOCG00000016158)	ENSLOCG00000016161	UTRN (ENSLOCG00000016162)	agbl5 (ENSLOCG00000016175)	ost4 (ENSLOCG00000017994)	selenoi (ENSLOCG00000016178)	drc1 (ENSLOCG00000016179)	OTOF (ENSLOCG00000016183)	FNDC1 (ENSLOCG00000016185)	sod2 (ENSLOCG00000016188) #20	wtap (ENSLOCG00000016191) #21	acat2 (ENSLOCG00000016193) #22	tcp1 (ENSLOCG00000016197) #24	PLEKHG1 (ENSLOCG00000016199)	iyd (ENSLOCG00000016202)	ppp1r14c (ENSLOCG00000016203)	MAP7 (ENSLOCG00000016205)	ENSLOCG00000016206	BCLAF1 (ENSLOCG00000016208)	armc1l (ENSLOCG00000016210)	mtfr2 (ENSLOCG00000016211)	PDE7B (ENSLOCG00000016213)	ahi1 (ENSLOCG00000016215)	myb (ENSLOCG00000016218)	hbs1l (ENSLOCG00000016221)	aldh8a1 (ENSLOCG00000016225)	SGK1 (ENSLOCG00000016226)
Osteoglossocephalai	ANCESTRAL SPECIES	183													ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712
Osteoglossiformes	ANCESTRAL SPECIES	16											ENSGT00940000153804.A	ENSGT00940000155086.A.h	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00950000183163.a.b	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248.oc.b	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000156399.vb	ENSGT00940000164496.b
Asian bonytongue	MODERN SPECIES		ENSSFOG00015019027	CDC25B (ENSSFOG00015019012)	cactin (ENSSFOG00015018985)	gfra4a (ENSSFOG00015018969)	ATRN (ENSSFOG00015018905)	dnaaf9 (ENSSFOG00015018879)	ENSSFOG00015018852	SLC4A11 (ENSSFOG00015018690)	EIF2AK3 (ENSSFOG00015018609)	zfyve28 (ENSSFOG00015027771)	foxi2 (ENSSFOG00015026749)	drc1 (ENSSFOG00015018560)	OTOF (ENSSFOG00015018253)	sod2 (ENSSFOG00015018195) #20	wtap (ENSSFOG00015032191) #21	acat2 (ENSSFOG00015018150) #22	tcp1 (ENSSFOG00015018108) #24	ENSSFOG00015018085	PLEKHG1 (ENSSFOG00015024237)	iyd (ENSSFOG00015018043)	ppp1r14c (ENSSFOG00015018031)	ENSSFOG00015018022	MAP7 (ENSSFOG00015017910)	BCLAF1 (ENSSFOG00015017853)	armc1l (ENSSFOG00015017825)	mtfr2 (ENSSFOG00015017810)	MYB (ENSSFOG00015017613)	hbs1l (ENSSFOG00015017544)	aldh8a1 (ENSSFOG00015033318)	sgk1 (ENSSFOG00015017351)	slc2a12 (ENSSFOG00015017339)
P. kingsleyae	MODERN SPECIES	82	ankef1a (ENSPKIG00000022097)	snap25a (ENSPKIG00000022134)	cnstb (ENSPKIG00000022184)	KIF26B (ENSPKIG00000022242)	hnrnpub (ENSPKIG00000022332)	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)	sod2 (ENSPKIG00000022722) #20	wtap (ENSPKIG00000022748) #21	wtap (ENSPKIG00000022767) #21	acat2 (ENSPKIG00000022793) #22	tcp1 (ENSPKIG00000022823) #24	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)	MAP7 (ENSPKIG00000022970)	BCLAF1 (ENSPKIG00000023059)	ENSPKIG00000023071	armc1l (ENSPKIG00000023085)	mtfr2 (ENSPKIG00000023105)	PDE7B (ENSPKIG00000023116)	MYB (ENSPKIG00000023135)	hbs1l (ENSPKIG00000023171)	aldh8a1 (ENSPKIG00000023217)	ENSPKIG00000023230	SGK1 (ENSPKIG00000023267)
Clupeocephala	ANCESTRAL SPECIES	140											ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00650000094590	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614
Otomorpha	ANCESTRAL SPECIES	166													ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT00940000162190	ENSGT00390000003188	ENSGT00940000156058	ENSGT00940000167206	ENSGT01030000234555.a.b.f.a	ENSGT00390000016811.h	ENSGT00940000164041.b.a	ENSGT00940000156557.h	ENSGT00530000063085.A.a	ENSGT00940000155656	ENSGT00940000154790.a.a.b.g
Clupeiformes	ANCESTRAL SPECIES	130	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000159694.b	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166
Atlantic herring	MODERN SPECIES	6	ENSCHAG00000007596	ENSCHAG00000007614	ENSCHAG00000007633	ENSCHAG00000007698	ENSCHAG00000007723	ENSCHAG00000007773	ENSCHAG00000007791	ENSCHAG00000007805	ENSCHAG00000007830	ENSCHAG00000007840	ENSCHAG00000007844	ENSCHAG00000007859	ENSCHAG00000007865	ENSCHAG00000007874	ENSCHAG00000007898	acat2 (ENSCHAG00000007921) #22	ENSCHAG00000007953	hebp2 (ENSCHAG00000008010)	acbd3 (ENSCHAG00000008028)	mixl1 (ENSCHAG00000008042)	lin9 (ENSCHAG00000008069)	parp1 (ENSCHAG00000008512)	ENSCHAG00000009072	ENSCHAG00000009099	ENSCHAG00000009616	pomcb (ENSCHAG00000009641)	ENSCHAG00000009799	ENSCHAG00000009869	ENSCHAG00000011980	ENSCHAG00000012089	ENSCHAG00000012205
Denticle herring	MODERN SPECIES	5	pak6b (ENSDCDG00000020509)	ENSDCDG00000020508	ENSDCDG00000020506	hpcal1 (ENSDCDG00000020491)	pdia6 (ENSDCDG00000020444)	otofa (ENSDCDG00000020229)	ENSDCDG00000020161	ENSDCDG00000020158	ENSDCDG00000020140	ENSDCDG00000020138	ENSDCDG00000020134	ENSDCDG00000020126	FNDC1 (ENSDCDG00000034402)	sod2 (ENSDCDG00000034388) #20	wtap (ENSDCDG00000034379) #21	acat2 (ENSDCDG00000034366) #22	KIF25 (ENSDCDG00000034359)	NHSL1 (ENSDCDG00000034352)	acbd3 (ENSDCDG00000034347)	mixl1 (ENSDCDG00000034346)	lin9 (ENSDCDG00000034335)	ENSDCDG00000034326	parp1 (ENSDCDG00000034290)	ENSDCDG00000034277	ENSDCDG00000034276	ENSDCDG00000034266	ENSDCDG00000034259	EFR3B (ENSDCDG00000033886)	pomcb (ENSDCDG00000033865)	ENSDCDG00000033864	SNX9 (ENSDCDG00000033822)
Otophysi	ANCESTRAL SPECIES	80			ENSGT00390000007015.w	ENSGT00940000156087.a.a	ENSGT00390000016577.b.a	ENSGT00530000063737.l.b	ENSGT00390000016904	ENSGT00940000168283	ENSGT00390000003866.a.b.a	ENSGT00410000026259	ENSGT00940000158622	ENSGT00950000182843.a.a.a.a	ENSGT00500000044870.a	ENSGT00940000158839	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00530000063651.a	ENSGT01030000234667.b.f.a	ENSGT00950000183114.a.a	ENSGT00940000166718	ENSGT00940000157133	ENSGT00390000002143.b.a	ENSGT00390000016811.g	ENSGT00940000164041.a	ENSGT00940000156557.g	ENSGT00940000154790.a.a.b.h	ENSGT00940000157082	ENSGT00730000111187.a.b
Characiphysae	ANCESTRAL SPECIES	118	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a
Characiphysae_b	ANCESTRAL SPECIES	13	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT01030000234667.b.f.a	ENSGT00390000007441	ENSGT00940000155671.y.b	ENSGT00390000003466	ENSGT00390000014122	ENSGT00390000001793	ENSGT00940000161652.b.b	ENSGT00940000157701.b	ENSGT00940000156464	ENSGT00940000156714.b	ENSGT01030000234564.a.a.a.a.b.b	ENSGT00940000155734	ENSGT00940000155699.a.a
Characoidei	ANCESTRAL SPECIES	130	ENSGT01020000230401.a.a.b.a.b	ENSGT01020000230401.a.a.b.a.a	ENSGT01030000234620.a.a.a.a.a.a	ENSGT00940000154482.b.b.a.d	ENSGT00940000157766.b.b	ENSGT00940000167286	ENSGT00940000156528.d	ENSGT00940000158912.i	ENSGT00590000083139.d.b.fb	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a
Red-bellied piranha	MODERN SPECIES	11	ppp2r5cb (ENSPNAG00000020720)	ENSPNAG00000020743	ENSPNAG00000020754	slc25a29 (ENSPNAG00000020765)	myh6 (ENSPNAG00000020778)	pak6b (ENSPNAG00000020809)	ENSPNAG00000020829	apobb.1 (ENSPNAG00000021212)	hpcal1 (ENSPNAG00000021252)	pdia6 (ENSPNAG00000021334)	otofa (ENSPNAG00000021496)	ENSPNAG00000021542	ENSPNAG00000021561	sod2 (ENSPNAG00000021603) #20	wtap (ENSPNAG00000006471) #21	acat2 (ENSPNAG00000021694) #22	KIF25 (ENSPNAG00000021740)	hebp2 (ENSPNAG00000021771)	NHSL1 (ENSPNAG00000021901)	acbd3 (ENSPNAG00000021929)	ccr6a (ENSPNAG00000021944)	cep43 (ENSPNAG00000003705)	myt1la (ENSPNAG00000022305)	rnaseh1 (ENSPNAG00000022344)	rps7 (ENSPNAG00000022404)	allc (ENSPNAG00000022422)	sox11b (ENSPNAG00000022444)	rnf144ab (ENSPNAG00000022457)	id2b (ENSPNAG00000022467)	kidins220b (ENSPNAG00000022762)	mboat2b (ENSPNAG00000022858)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029912	slc25a29 (ENSAMXG00000032847)	myh6 (ENSAMXG00000025295)	ENSAMXG00000029153	pak6b (ENSAMXG00000012204)	ENSAMXG00000012234	apobb.1 (ENSAMXG00000012267)	hpcal1 (ENSAMXG00000031838)	pdia6 (ENSAMXG00000034339)	otofa (ENSAMXG00000002401)	ENSAMXG00000037436	ENSAMXG00000002234	FNDC1 (ENSAMXG00000002223)	sod2 (ENSAMXG00000040232) #20	wtap (ENSAMXG00000030347) #21	acat2 (ENSAMXG00000002149) #22	ENSAMXG00000002134	hebp2 (ENSAMXG00000034618)	NHSL1 (ENSAMXG00000002111)	acbd3 (ENSAMXG00000002091)	ENSAMXG00000043932	ccr6a (ENSAMXG00000041469)	cep43 (ENSAMXG00000002000)	myt1la (ENSAMXG00000001873)	ENSAMXG00000039837	rnaseh1 (ENSAMXG00000042940)	rps7 (ENSAMXG00000041019)	allc (ENSAMXG00000039561)	sox11b (ENSAMXG00000001703)	rnf144ab (ENSAMXG00000042340)	ENSAMXG00000041355
Electric eel	MODERN SPECIES	32	ENSEEEG00000009121	ENSEEEG00000009122	slc25a29 (ENSEEEG00000009123)	ENSEEEG00000009145	pak6b (ENSEEEG00000009146)	ENSEEEG00000009147	apobb.1 (ENSEEEG00000009150)	hpcal1 (ENSEEEG00000009153)	pdia6 (ENSEEEG00000009160)	otofa (ENSEEEG00000009415)	ENSEEEG00000009474	ENSEEEG00000009477	FNDC1 (ENSEEEG00000009480)	sod2 (ENSEEEG00000009496) #20	wtap (ENSEEEG00000009684) #21	acat2 (ENSEEEG00000009685) #22	ENSEEEG00000009686	hebp2 (ENSEEEG00000009687)	NHSL1 (ENSEEEG00000009690)	acbd3 (ENSEEEG00000009692)	KBTBD11 (ENSEEEG00000009724)	ccr6a (ENSEEEG00000009725)	cep43 (ENSEEEG00000009727)	rnaseh1 (ENSEEEG00000009735)	rps7 (ENSEEEG00000009739)	allc (ENSEEEG00000009756)	sox11b (ENSEEEG00000009766)	rnf144ab (ENSEEEG00000009767)	id2b (ENSEEEG00000009787)	kidins220b (ENSEEEG00000009802)	mboat2b (ENSEEEG00000009813)
Channel catfish	MODERN SPECIES	17	hsp90a.1 (ENSIPUG00000022238)	ppp2r5cb (ENSIPUG00000022710)	DIO3 (ENSIPUG00000022732)	slc25a29 (ENSIPUG00000022736)	myh6 (ENSIPUG00000022744)	pak6b (ENSIPUG00000022810)	ENSIPUG00000022824	apobb.1 (ENSIPUG00000022832)	HPCAL1 (ENSIPUG00000022844)	pdia6 (ENSIPUG00000022856)	otofa (ENSIPUG00000022878)	c25h2orf70 (ENSIPUG00000022903)	fndc1 (ENSIPUG00000022909)	SOD2 (ENSIPUG00000022934) #20	wtap (ENSIPUG00000022938) #21	acat2 (ENSIPUG00000022947) #22	kif25 (ENSIPUG00000022979)	hebp2 (ENSIPUG00000022989)	nhsl1 (ENSIPUG00000022998)	acbd3 (ENSIPUG00000023014)	ccr6a (ENSIPUG00000023019)	fgfr1op (ENSIPUG00000023022)	myt1la (ENSIPUG00000023048)	rnaseh1 (ENSIPUG00000023060)	rps7 (ENSIPUG00000023071)	allc (ENSIPUG00000023088)	sox11b (ENSIPUG00000023096)	ENSIPUG00000023404	id2b (ENSIPUG00000023411)	kidins220b (ENSIPUG00000023417)	mboat2b (ENSIPUG00000023454)
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00940000162477.c	ENSGT00390000014904	ENSGT00950000182906.b.a.i.b	ENSGT00510000048701.a	ENSGT00940000156778.l	ENSGT00530000063408.A	ENSGT00940000160723	ENSGT00590000083139.d.b.fb	ENSGT00940000154645.A	ENSGT00940000155646.n	ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00940000162166	ENSGT00940000160412.a	ENSGT00950000182963.a.a	ENSGT00940000155936.a.a	ENSGT00390000017067	ENSGT00940000164632.b.b.b	ENSGT00940000157219.f	ENSGT00390000008041.A	ENSGT00390000011270	ENSGT00940000153433.B.a.b	ENSGT00940000158456	ENSGT00940000153881.a	ENSGT00940000156570.b	ENSGT00940000157283	ENSGT00390000018116
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	420						ENSGT00940000156778.l.d	ENSGT00530000063408.A.l.b	ENSGT00940000160723.i	ENSGT00590000083139.d.b.fb.b	ENSGT00940000154645.A.j	ENSGT00940000155646.n.b	ENSGT00940000155086.B.d	ENSGT00530000063558.B.f	ENSGT00390000011877.a #20	ENSGT00390000013931.f #21	ENSGT01030000234626.B.pb #22	ENSGT00940000162166.g.b	ENSGT00940000160412.a.b	ENSGT00950000182963.a.a.k.a	ENSGT00530000063651.a.o.a	ENSGT01030000234667.b.f.a.d	ENSGT00390000007441.e	ENSGT00940000155671.y.b.b	ENSGT00390000003466.m	ENSGT00390000014122.g	ENSGT00390000001793.d	ENSGT00940000161652.b.b.b.b.a	ENSGT00940000157701.f.a.b	ENSGT00940000156464.eb.a.a	ENSGT00940000156714.b.a	ENSGT01030000234564.a.a.a.a.b.b.e
Goldfish	MODERN SPECIES	39	casp8ap2 (ENSCARG00000044635)	GJA10 (ENSCARG00000044641)	BACH2 (ENSCARG00000044654)	map3k7 (ENSCARG00000044760)	cited2 (ENSCARG00000047369)	ENSCARG00000047379	cpsf3 (ENSCARG00000047449)	asap2b (ENSCARG00000047812)	e2f6 (ENSCARG00000048277)	mboat2b (ENSCARG00000022572)	kidins220b (ENSCARG00000022840)	id2b (ENSCARG00000022907)	FNDC1 (ENSCARG00000022921)	sod2 (ENSCARG00000022970) #20	wtap (ENSCARG00000023002) #21	acat2 (ENSCARG00000023014) #22	hebp2 (ENSCARG00000023065)	NHSL1 (ENSCARG00000023097)	acbd3 (ENSCARG00000023157)	ccr6a (ENSCARG00000023204)	cep43 (ENSCARG00000023220)	myt1la (ENSCARG00000023430)	rnaseh1 (ENSCARG00000025518)	rps7 (ENSCARG00000025561)	allc (ENSCARG00000025610)	prg4b (ENSCARG00000025761)	scyl3 (ENSCARG00000025783)	ENSCARG00000025793	gpr176 (ENSCARG00000025804)	THBS1 (ENSCARG00000025844)	rxrgb (ENSCARG00000026321)
Cyprininae_a	ANCESTRAL SPECIES	86	ENSGT01030000234595.A.b.a.b.d	ENSGT00940000162477.c.g.b	ENSGT00390000014904.f	ENSGT00950000182906.b.a.i.b.c	ENSGT00510000048701.a.c	ENSGT00940000156778.l.d	ENSGT00530000063408.A.l.b	ENSGT00940000160723.i	ENSGT00590000083139.d.b.fb.b	ENSGT00940000154645.A.j	ENSGT00940000155646.n.b	ENSGT00990000210545	ENSGT00530000063558.B.f	ENSGT00390000011877.a #20	ENSGT00390000013931.f #21	ENSGT01030000234626.B.pb #22	ENSGT00940000162166.g.b	ENSGT00940000160412.a.b	ENSGT00950000182963.a.a.k.a	ENSGT00530000063651.a.o.a	ENSGT01030000234667.b.f.a.d	ENSGT00390000007441.e	ENSGT00940000155671.y.b.b	ENSGT00390000003466.m	ENSGT00390000014122.g	ENSGT00390000001793.d	ENSGT00940000161652.b.b.b.b.a	ENSGT00940000157701.f.a.b	ENSGT00940000156464.eb.a.a	ENSGT00940000156714.b.a	ENSGT01030000234564.a.a.a.a.b.b.e
Common carp reference	MODERN SPECIES	28	GRM1 (ENSCCRG00000039754)	rab32a (ENSCCRG00000053320)	stxbp5a (ENSCCRG00000015647)	SAMD5 (ENSCCRG00000071091)	sash1a (ENSCCRG00000035123)	usta (ENSCCRG00000074877)	slc22a16 (ENSCCRG00000033251)	apobb.1 (ENSCCRG00000036664)	pdia6 (ENSCCRG00000035441)	hpcal1 (ENSCCRG00000072721)	otofa (ENSCCRG00000036721)	ENSCCRG00000009675	FNDC1 (ENSCCRG00000061407)	sod2 (ENSCCRG00000053850) #20	wtap (ENSCCRG00000036927) #21	acat2 (ENSCCRG00000076853) #22	ENSCCRG00000064494	ENSCCRG00000054161	acbd3 (ENSCCRG00000036992)	ccr6a (ENSCCRG00000053257)	cep43 (ENSCCRG00000074485)	myt1la (ENSCCRG00000064746)	rnaseh1 (ENSCCRG00000014420)	rps7 (ENSCCRG00000014352)	allc (ENSCCRG00000012846)	sox11b (ENSCCRG00000064255)	rnf144ab (ENSCCRG00000036211)	id2b (ENSCCRG00000058010)	kidins220b (ENSCCRG00000050017)	mboat2b (ENSCCRG00000049813)	e2f6 (ENSCCRG00000049786)
Golden-line barbel	MODERN SPECIES	14	GRM1 (ENSSGRG00000039593)	rab32a (ENSSGRG00000039598)	ENSSGRG00000039602	stxbp5a (ENSSGRG00000039621)	SAMD5 (ENSSGRG00000039656)	sash1a (ENSSGRG00000039664)	slc22a16 (ENSSGRG00000039670)	apobb.1 (ENSSGRG00000039671)	hpcal1 (ENSSGRG00000039674)	pdia6 (ENSSGRG00000039707)	ENSSGRG00000040440	ENSSGRG00000040448	ENSSGRG00000040450	sod2 (ENSSGRG00000040469) #20	wtap (ENSSGRG00000040595) #21	acat2 (ENSSGRG00000040620) #22	hebp2 (ENSSGRG00000040677)	NHSL1 (ENSSGRG00000040679)	acbd3 (ENSSGRG00000040680)	cep43 (ENSSGRG00000040684)	myt1la (ENSSGRG00000040685)	rnaseh1 (ENSSGRG00000040687)	allc (ENSSGRG00000040688)	sox11b (ENSSGRG00000040812)	rnf144ab (ENSSGRG00000040813)	id2b (ENSSGRG00000040814)	kidins220b (ENSSGRG00000040828)	mboat2b (ENSSGRG00000041592)	ENSSGRG00000041611	asap2b (ENSSGRG00000041638)	ENSSGRG00000042339
Cyprininae	ANCESTRAL SPECIES	271	ENSGT00940000162477.c.g.a	ENSGT00390000014904.e	ENSGT00950000182906.b.a.i.b.d	ENSGT00510000048701.a.d	ENSGT00940000156778.l.c	ENSGT00530000063408.A.l.a	ENSGT00940000160723.j	ENSGT00590000083139.d.b.fb.a	ENSGT00940000154645.A.i	ENSGT00940000155646.n.a	ENSGT00940000155086.B.c	ENSGT00940000166976	ENSGT00530000063558.B.e	ENSGT00390000011877.b #20	ENSGT00390000013931.e #21	ENSGT01030000234626.B.qb #22	ENSGT00940000162166.g.a	ENSGT00940000160412.a.a	ENSGT00950000182963.a.a.k.b	ENSGT00530000063651.a.o.b	ENSGT01030000234667.b.f.a.c	ENSGT00390000007441.f	ENSGT00940000155671.y.b.a
Goldfish	MODERN SPECIES	12	cd164 (ENSCARG00000027140)	GRM1 (ENSCARG00000027150)	rab32a (ENSCARG00000027172)	ADGB (ENSCARG00000027197)	stxbp5a (ENSCARG00000027250)	sash1a (ENSCARG00000028744)	usta (ENSCARG00000028867)	slc22a16 (ENSCARG00000028907)	apobb.1 (ENSCARG00000028946)	hpcal1 (ENSCARG00000029173)	pdia6 (ENSCARG00000029220)	otofa (ENSCARG00000029670)	ENSCARG00000029838	sod2 (ENSCARG00000029851) #20	wtap (ENSCARG00000029872) #21	acat2 (ENSCARG00000029884) #22	KIF25 (ENSCARG00000030013)	hebp2 (ENSCARG00000030029)	NHSL1 (ENSCARG00000030063)	acbd3 (ENSCARG00000030113)	ccr6a (ENSCARG00000030132)	cep43 (ENSCARG00000030166)	ENSCARG00000030285	myt1la (ENSCARG00000030291)	atf6 (ENSCARG00000030397)	olfml2ba (ENSCARG00000030419)	fam102bb (ENSCARG00000030428)	henmt1 (ENSCARG00000030441)	ENSCARG00000030483	ROCK2 (ENSCARG00000030604)	ENSCARG00000031005
Cyprininae_a	ANCESTRAL SPECIES	127	ENSGT00940000162477.c.g.a	ENSGT00390000014904.e	ENSGT00950000182906.b.a.i.b.d	ENSGT00510000048701.a.d	ENSGT00940000156778.l.c	ENSGT00530000063408.A.l.a	ENSGT00940000160723.j	ENSGT00590000083139.d.b.fb.a	ENSGT00940000154645.A.i	ENSGT00940000155646.n.a	ENSGT00940000155086.B.c	ENSGT00940000166976	ENSGT00530000063558.B.e	ENSGT00390000011877.b #20	ENSGT00390000013931.e #21	ENSGT01030000234626.B.qb #22	ENSGT00940000162166.g.a	ENSGT00940000162166.h	ENSGT00940000160412.a.a	ENSGT00950000182963.a.a.k.b	ENSGT00530000063651.a.o.b	ENSGT01030000234667.b.f.a.c	ENSGT00390000007441.f	ENSGT00940000155671.y.b.a	ENSGT00390000003466.n	ENSGT00390000001793.c	ENSGT00940000161652.b.b.b.b.b	ENSGT00940000157701.f.a.a	ENSGT00940000156464.eb.a.b	ENSGT00940000156714.b.b	ENSGT01030000234564.a.a.a.a.b.b.f
Common carp reference	MODERN SPECIES	34	ENSCCRG00000032833	ADGB (ENSCCRG00000067547)	stxbp5a (ENSCCRG00000016687)	SAMD5 (ENSCCRG00000075853)	sash1a (ENSCCRG00000076668)	usta (ENSCCRG00000078488)	slc22a16 (ENSCCRG00000035150)	apobb.1 (ENSCCRG00000036877)	hpcal1 (ENSCCRG00000075624)	pdia6 (ENSCCRG00000081509)	otofa (ENSCCRG00000036895)	ENSCCRG00000072273	FNDC1 (ENSCCRG00000036913)	sod2 (ENSCCRG00000079233) #20	wtap (ENSCCRG00000061771) #21	acat2 (ENSCCRG00000072282) #22	ENSCCRG00000036974	ENSCCRG00000079447	acbd3 (ENSCCRG00000030468)	ccr6a (ENSCCRG00000079596)	cep43 (ENSCCRG00000004734)	myt1la (ENSCCRG00000004110)	rnaseh1 (ENSCCRG00000012828)	ENSCCRG00000061716	rps7 (ENSCCRG00000012830)	ENSCCRG00000070367	sox11b (ENSCCRG00000054079)	rnf144ab (ENSCCRG00000075326)	id2b (ENSCCRG00000061529)	kidins220b (ENSCCRG00000050138)	mboat2b (ENSCCRG00000049975)
Golden-line barbel	MODERN SPECIES	361								apobb.1 (ENSSGRG00000029494)	hpcal1 (ENSSGRG00000029484)	pdia6 (ENSSGRG00000029433)	otofa (ENSSGRG00000029285)	ENSSGRG00000029279	FNDC1 (ENSSGRG00000029278)	sod2 (ENSSGRG00000029276) #20	wtap (ENSSGRG00000029204) #21	acat2 (ENSSGRG00000029036) #22	KIF25 (ENSSGRG00000029034)	hebp2 (ENSSGRG00000029033)	NHSL1 (ENSSGRG00000029030)	acbd3 (ENSSGRG00000029022)	ccr6a (ENSSGRG00000029020)	cep43 (ENSSGRG00000029019)	myt1la (ENSSGRG00000028996)	rnaseh1 (ENSSGRG00000028989)	rps7 (ENSSGRG00000028981)	allc (ENSSGRG00000028980)	sox11b (ENSSGRG00000028979)	rnf144ab (ENSSGRG00000028975)	id2b (ENSSGRG00000028973)	kidins220b (ENSSGRG00000028621)	mboat2b (ENSSGRG00000028611)
Zebrafish	MODERN SPECIES	12	rab32a (ENSDARG00000029036)	ENSDARG00000110912	ADGB (ENSDARG00000005595)	stxbp5a (ENSDARG00000002656)	sash1a (ENSDARG00000007179)	usta (ENSDARG00000006044)	slc22a16 (ENSDARG00000015869)	apobb.1 (ENSDARG00000022767)	hpcal1 (ENSDARG00000022763)	pdia6 (ENSDARG00000009001)	otofa (ENSDARG00000030832)	ENSDARG00000089110	FNDC1 (ENSDARG00000002847)	sod2 (ENSDARG00000042644) #20	wtap (ENSDARG00000042642) #21	acat2 (ENSDARG00000007127) #22	KIF25 (ENSDARG00000017532)	hebp2 (ENSDARG00000042630)	NHSL1 (ENSDARG00000042627)	acbd3 (ENSDARG00000042623)	ccr6a (ENSDARG00000087474)	cep43 (ENSDARG00000003058)	myt1la (ENSDARG00000008209)	rnaseh1 (ENSDARG00000042571)	rps7 (ENSDARG00000042566)	allc (ENSDARG00000042562)	sox11b (ENSDARG00000095743)	rnf144ab (ENSDARG00000042557)	id2b (ENSDARG00000029544)	kidins220b (ENSDARG00000017338)	mboat2b (ENSDARG00000042551)
Euteleosteomorpha	ANCESTRAL SPECIES	19	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00950000182941.a.a.a.b	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B
Acanthomorphata	ANCESTRAL SPECIES	59										ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00940000159266	ENSGT00530000063712.a.b	ENSGT01030000234809
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Tiger tail seahorse	MODERN SPECIES	450	WDR20 (ENSHCOG00000014518)	mgat2 (ENSHCOG00000014525)	ENSHCOG00000014532	ENSHCOG00000014550	MDGA2 (ENSHCOG00000014586)	hsp90aa1.1 (ENSHCOG00000014614)	HSP90AA1 (ENSHCOG00000014636)	ppp2r5cb (ENSHCOG00000014671)	ENSHCOG00000014684	ENSHCOG00000000411	slc25a47a (ENSHCOG00000014703)	slc25a29 (ENSHCOG00000014732)	sod2 (ENSHCOG00000014748) #20	ENSHCOG00000014761 #21	wtap (ENSHCOG00000014785) #21	acat2 (ENSHCOG00000014816) #22	ENSHCOG00000014809	ENSHCOG00000014907	ENSHCOG00000014921	PLEKHG1 (ENSHCOG00000014925)	tcp1 (ENSHCOG00000014951) #24	smek1 (ENSHCOG00000014980)	mycn (ENSHCOG00000015013)	mrpl19 (ENSHCOG00000015019)	ENSHCOG00000015026	efhc1 (ENSHCOG00000015031)	tram2 (ENSHCOG00000015072)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00940000180091	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Amazon molly	MODERN SPECIES	253	ppil6 (ENSPFOG00000019543)	cd164 (ENSPFOG00000019542)	cep57l1 (ENSPFOG00000019541)	sesn1 (ENSPFOG00000019540)	ARMC2 (ENSPFOG00000019538)	foxo3b (ENSPFOG00000019537)	afg1lb (ENSPFOG00000019535)	snx3 (ENSPFOG00000019534)	nr2e1 (ENSPFOG00000019532)	OSTM1 (ENSPFOG00000019529)	otofa (ENSPFOG00000019508)	otofa (ENSPFOG00000019457)	FNDC1 (ENSPFOG00000019433)	sod2 (ENSPFOG00000019429) #20	wtap (ENSPFOG00000019425) #21	acat2 (ENSPFOG00000019421) #22	tcp1 (ENSPFOG00000019417) #24	PLEKHG1 (ENSPFOG00000019410)	ENSPFOG00000020614	paplnb (ENSPFOG00000019407)	ENSPFOG00000019405	smek1 (ENSPFOG00000019400)	ENSPFOG00000019396	mycn (ENSPFOG00000019393)	ENSPFOG00000022923	mrpl19 (ENSPFOG00000019392)	ENSPFOG00000019390	efhc1 (ENSPFOG00000019386)	tram2 (ENSPFOG00000019383)	xkr5a (ENSPFOG00000019377)	ENSPFOG00000019374
Sailfin molly	MODERN SPECIES	2073													FNDC1 (ENSPLAG00000009939)	sod2 (ENSPLAG00000009968) #20	wtap (ENSPLAG00000009971) #21	acat2 (ENSPLAG00000000222) #22	tcp1 (ENSPLAG00000000657) #24
Guppy	MODERN SPECIES	452	ENSPREG00000004765	ppil6 (ENSPREG00000004785)	cep57l1 (ENSPREG00000004797)	sesn1 (ENSPREG00000004835)	ARMC2 (ENSPREG00000004984)	ENSPREG00000005022	foxo3b (ENSPREG00000005040)	afg1lb (ENSPREG00000005157)	snx3 (ENSPREG00000005216)	nr2e1 (ENSPREG00000005235)	OSTM1 (ENSPREG00000005263)	otofa (ENSPREG00000005299)	FNDC1 (ENSPREG00000005423)	sod2 (ENSPREG00000005529) #20	wtap (ENSPREG00000005555) #21	acat2 (ENSPREG00000005675) #22	tcp1 (ENSPREG00000005703) #24	ENSPREG00000005734	paplnb (ENSPREG00000005755)	ERH (ENSPREG00000005785)	smek1 (ENSPREG00000005878)	mycn (ENSPREG00000005916)	mrpl19 (ENSPREG00000005939)	ENSPREG00000005957	efhc1 (ENSPREG00000005975)	tram2 (ENSPREG00000005990)	xkr5a (ENSPREG00000006029)	ENSPREG00000006060	prep (ENSPREG00000006132)	lin28b (ENSPREG00000006170)	GRIK2 (ENSPREG00000006189)
Platyfish	MODERN SPECIES	6	ENSXMAG00000024566	ppil6 (ENSXMAG00000003243)	cd164 (ENSXMAG00000022598)	cep57l1 (ENSXMAG00000003254)	sesn1 (ENSXMAG00000028518)	ARMC2 (ENSXMAG00000003268)	foxo3 (ENSXMAG00000003269)	afg1lb (ENSXMAG00000003272)	snx3 (ENSXMAG00000003281)	nr2e1 (ENSXMAG00000003283)	OSTM1 (ENSXMAG00000029145)	otofa (ENSXMAG00000003300)	FNDC1 (ENSXMAG00000003322)	sod2 (ENSXMAG00000003325) #20	wtap (ENSXMAG00000003331) #21	acat2 (ENSXMAG00000003334) #22	tcp1 (ENSXMAG00000003351) #24	PLEKHG1 (ENSXMAG00000003360)	paplnb (ENSXMAG00000003371)	ENSXMAG00000029136	smek1 (ENSXMAG00000003375)	mycn (ENSXMAG00000003386)	mrpl19 (ENSXMAG00000003388)	ENSXMAG00000021325	efhc1 (ENSXMAG00000003396)	tram2 (ENSXMAG00000003399)	xkr5a (ENSXMAG00000003413)	ENSXMAG00000003417	prep (ENSXMAG00000003424)	lin28b (ENSXMAG00000003450)	GRIK2 (ENSXMAG00000003453)
NAME_4	ANCESTRAL SPECIES	8	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00940000155086.C	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Mummichog	MODERN SPECIES	2240	ppil6 (ENSFHEG00000023323)	cd164 (ENSFHEG00000023325)	cep57l1 (ENSFHEG00000023326)	sesn1 (ENSFHEG00000023330)	ARMC2 (ENSFHEG00000023335)	foxo3b (ENSFHEG00000023338)	afg1lb (ENSFHEG00000023340)	snx3 (ENSFHEG00000023342)	nr2e1 (ENSFHEG00000023345)	OSTM1 (ENSFHEG00000023349)	ENSFHEG00000023352	ENSFHEG00000023354	FNDC1 (ENSFHEG00000023360)	sod2 (ENSFHEG00000023363) #20	wtap (ENSFHEG00000023365) #21	acat2 (ENSFHEG00000023174) #22	tcp1 (ENSFHEG00000023109) #24	PLEKHG1 (ENSFHEG00000023038)	paplnb (ENSFHEG00000023004)	ERH (ENSFHEG00000022994)	smek1 (ENSFHEG00000022980)	mycn (ENSFHEG00000022918)	mrpl19 (ENSFHEG00000022887)	ENSFHEG00000022847	efhc1 (ENSFHEG00000022840)	tram2 (ENSFHEG00000022697)	xkr5a (ENSFHEG00000022661)	ENSFHEG00000022651	prep (ENSFHEG00000022636)	lin28b (ENSFHEG00000022590)	GRIK2 (ENSFHEG00000022564)
Sheepshead minnow	MODERN SPECIES	150	ENSCVAG00000001660	ppil6 (ENSCVAG00000001664)	cd164 (ENSCVAG00000001666)	cep57l1 (ENSCVAG00000001671)	sesn1 (ENSCVAG00000001679)	ARMC2 (ENSCVAG00000001686)	foxo3b (ENSCVAG00000001690)	afg1lb (ENSCVAG00000001709)	snx3 (ENSCVAG00000001713)	nr2e1 (ENSCVAG00000001716)	OSTM1 (ENSCVAG00000001719)	otofa (ENSCVAG00000001740)	ENSCVAG00000001745	sod2 (ENSCVAG00000001748) #20	wtap (ENSCVAG00000001753) #21	acat2 (ENSCVAG00000001762) #22	tcp1 (ENSCVAG00000001769) #24	PLEKHG1 (ENSCVAG00000001777)	paplnb (ENSCVAG00000001786)	ENSCVAG00000001791	smek1 (ENSCVAG00000001802)	mycn (ENSCVAG00000001807)	mrpl19 (ENSCVAG00000001815)	ENSCVAG00000001822	ENSCVAG00000001824	tram2 (ENSCVAG00000001838)	xkr5a (ENSCVAG00000001852)	ENSCVAG00000001859	prep (ENSCVAG00000001865)	lin28b (ENSCVAG00000001868)	GRIK2 (ENSCVAG00000001886)
Aplocheiloidei	ANCESTRAL SPECIES	27											ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Mangrove rivulus	MODERN SPECIES	20											ENSKMAG00000015262	otofa (ENSKMAG00000015305)	FNDC1 (ENSKMAG00000015455)	sod2 (ENSKMAG00000015554) #20	wtap (ENSKMAG00000015655) #21	acat2 (ENSKMAG00000015691) #22	tcp1 (ENSKMAG00000015727) #24	PLEKHG1 (ENSKMAG00000015816)	paplnb (ENSKMAG00000015873)	ERH (ENSKMAG00000015901)	smek1 (ENSKMAG00000015917)	mycn (ENSKMAG00000015950)	mrpl19 (ENSKMAG00000015967)	ENSKMAG00000015994	efhc1 (ENSKMAG00000016043)	tram2 (ENSKMAG00000016177)	xkr5a (ENSKMAG00000016226)	ENSKMAG00000016247	prep (ENSKMAG00000016265)	lin28b (ENSKMAG00000016334)	GRIK2 (ENSKMAG00000016401)
Oryzias	ANCESTRAL SPECIES	19	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Indian medaka	MODERN SPECIES	22	ENSOMEG00000007777	ENSOMEG00000007768	EFR3B (ENSOMEG00000007711)	sesn1 (ENSOMEG00000007536)	ENSOMEG00000007473	foxo3b (ENSOMEG00000007462)	afg1lb (ENSOMEG00000007445)	snx3 (ENSOMEG00000007412)	nr2e1 (ENSOMEG00000007396)	OSTM1 (ENSOMEG00000007371)	ENSOMEG00000007358	otofa (ENSOMEG00000007326)	FNDC1 (ENSOMEG00000007225)	sod2 (ENSOMEG00000006930) #20	wtap (ENSOMEG00000006907) #21	acat2 (ENSOMEG00000006874) #22	tcp1 (ENSOMEG00000006853) #24	PLEKHG1 (ENSOMEG00000006809)	paplnb (ENSOMEG00000006760)	ENSOMEG00000006737	ERH (ENSOMEG00000006713)	smek1 (ENSOMEG00000006704)	mycn (ENSOMEG00000000785)	mrpl19 (ENSOMEG00000006661)	ENSOMEG00000006632	efhc1 (ENSOMEG00000006600)	tram2 (ENSOMEG00000006582)	xkr5a (ENSOMEG00000006544)	ENSOMEG00000006502	prep (ENSOMEG00000006468)	lin28b (ENSOMEG00000006425)
Javanese ricefish	MODERN SPECIES	16	ENSOJAG00000017068	EFR3B (ENSOJAG00000016735)	ENSOJAG00000016707	sesn1 (ENSOJAG00000016607)	ARMC2 (ENSOJAG00000016586)	foxo3b (ENSOJAG00000016575)	afg1lb (ENSOJAG00000016467)	snx3 (ENSOJAG00000016432)	nr2e1 (ENSOJAG00000016346)	OSTM1 (ENSOJAG00000016324)	ENSOJAG00000016316	otofa (ENSOJAG00000015846)	ENSOJAG00000015626	sod2 (ENSOJAG00000015572) #20	wtap (ENSOJAG00000015544) #21	acat2 (ENSOJAG00000015488) #22	tcp1 (ENSOJAG00000015426) #24	ENSOJAG00000015416	PLEKHG1 (ENSOJAG00000023344)	paplnb (ENSOJAG00000023337)	ERH (ENSOJAG00000023329)	smek1 (ENSOJAG00000023298)	mycn (ENSOJAG00000023283)	mrpl19 (ENSOJAG00000023277)	ENSOJAG00000023270	efhc1 (ENSOJAG00000023264)	tram2 (ENSOJAG00000023245)	xkr5a (ENSOJAG00000023230)	ENSOJAG00000023216	prep (ENSOJAG00000023160)	lin28b (ENSOJAG00000023134)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT01030000234555.a.b.f.a	ENSGT00940000167206	ENSGT00390000002143.b.a	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000176160	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b.e	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Japanese Medaka HdrR	MODERN SPECIES	16	parp1 (ENSORLG00000013691)	ENSORLG00000013598	EFR3B (ENSORLG00000013543)	sesn1 (ENSORLG00000013484)	ARMC2 (ENSORLG00000013466)	foxo3b (ENSORLG00000013450)	afg1lb (ENSORLG00000013445)	snx3 (ENSORLG00000013433)	nr2e1 (ENSORLG00000013426)	OSTM1 (ENSORLG00000013403)	ENSORLG00000026052	otofa (ENSORLG00000013388)	FNDC1 (ENSORLG00000013281)	sod2 (ENSORLG00000013261) #20	wtap (ENSORLG00000013240) #21	acat2 (ENSORLG00000013226) #22	tcp1 (ENSORLG00000013195) #24	PLEKHG1 (ENSORLG00000013150)	paplnb (ENSORLG00000013108)	ERH (ENSORLG00000028815)	smek1 (ENSORLG00000013092)	mycn (ENSORLG00000022362)	mrpl19 (ENSORLG00000013027)	ENSORLG00000013000	efhc1 (ENSORLG00000012981)	tram2 (ENSORLG00000012971)	xkr5a (ENSORLG00000012952)	prdm1c (ENSORLG00000012948)	prep (ENSORLG00000012934)	lin28b (ENSORLG00000012891)	GRIK2 (ENSORLG00000012884)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pomacentridae	ANCESTRAL SPECIES	34												ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Amphiprion	ANCESTRAL SPECIES	55	ENSGT00940000157766.b.b	ENSGT01060000248799	ENSGT00390000007874	ENSGT00950000183147.A.a.g.b	ENSGT00940000167177	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B	ENSGT00940000157624.a	ENSGT00390000011890	ENSGT00390000016097.c	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Clown anemonefish	MODERN SPECIES	1408										pigh (ENSAOCG00000011836)	ZFYVE1 (ENSAOCG00000011802)	otofa (ENSAOCG00000011718)	FNDC1 (ENSAOCG00000011580)	sod2 (ENSAOCG00000011525) #20	wtap (ENSAOCG00000011495) #21	acat2 (ENSAOCG00000011461) #22	tcp1 (ENSAOCG00000011419) #24	ENSAOCG00000011356	paplnb (ENSAOCG00000011325)	ERH (ENSAOCG00000011284)	smek1 (ENSAOCG00000011257)
Orange clownfish	MODERN SPECIES	2	slc25a29 (ENSAPEG00000023144)	ENSAPEG00000023138	vrtn (ENSAPEG00000023134)	syndig1l (ENSAPEG00000023081)	dll4 (ENSAPEG00000023015)	chac1 (ENSAPEG00000022979)	ino80 (ENSAPEG00000022911)	vps18 (ENSAPEG00000022883)	rhov (ENSAPEG00000022872)	pigh (ENSAPEG00000022860)	ZFYVE1 (ENSAPEG00000022833)	otofa (ENSAPEG00000022763)	ENSAPEG00000022735	sod2 (ENSAPEG00000022721) #20	wtap (ENSAPEG00000022698) #21	acat2 (ENSAPEG00000022680) #22	tcp1 (ENSAPEG00000022617) #24	ENSAPEG00000022606	paplnb (ENSAPEG00000022586)	ERH (ENSAPEG00000022577)	smek1 (ENSAPEG00000022492)	mycn (ENSAPEG00000022477)	mrpl19 (ENSAPEG00000022446)	ENSAPEG00000022432	ENSAPEG00000022427	efhc1 (ENSAPEG00000022192)	tram2 (ENSAPEG00000022143)	xkr5a (ENSAPEG00000022118)	ENSAPEG00000022096	prep (ENSAPEG00000022083)	ENSAPEG00000022072
Spiny chromis	MODERN SPECIES	1220													FNDC1 (ENSAPOG00000004149)	sod2 (ENSAPOG00000004182) #20	wtap (ENSAPOG00000004201) #21	acat2 (ENSAPOG00000004232) #22	tcp1 (ENSAPOG00000004288) #24	PLEKHG1 (ENSAPOG00000004322)
Bicolor damselfish	MODERN SPECIES	1325												otofa (ENSSPAG00000011816)	FNDC1 (ENSSPAG00000011652)	sod2 (ENSSPAG00000011621) #20	wtap (ENSSPAG00000011600) #21	acat2 (ENSSPAG00000011575) #22	tcp1 (ENSSPAG00000011506) #24	PLEKHG1 (ENSSPAG00000011477)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	615	ENSPNYG00000023418	ENSPNYG00000023417	ENSPNYG00000023415	ENSPNYG00000023412	ENSPNYG00000023410	ENSPNYG00000023409	ENSPNYG00000023407	ENSPNYG00000023406	ENSPNYG00000023405	ENSPNYG00000023404	ENSPNYG00000023403	ENSPNYG00000023402	ENSPNYG00000023400	ENSPNYG00000023399	ENSPNYG00000023398	acat2 (ENSPNYG00000023397) #22	ENSPNYG00000023395	ENSPNYG00000023393	ENSPNYG00000023392	ENSPNYG00000023390	ENSPNYG00000023389	ENSPNYG00000023386	ENSPNYG00000023384	ENSPNYG00000023383	ENSPNYG00000023381	ENSPNYG00000023379	ENSPNYG00000023378	ENSPNYG00000023377	ENSPNYG00000023375	ENSPNYG00000023372	ENSPNYG00000023371
P. nyererei	MODERN SPECIES	336	cep57l1 (ENSPNYG00000022144)	sesn1 (ENSPNYG00000022168)	ARMC2 (ENSPNYG00000022190)	ENSPNYG00000022211	foxo3b (ENSPNYG00000022219)	afg1lb (ENSPNYG00000022230)	snx3 (ENSPNYG00000022249)	nr2e1 (ENSPNYG00000022258)	OSTM1 (ENSPNYG00000022269)	drc1 (ENSPNYG00000022285)	otofa (ENSPNYG00000022307)	ENSPNYG00000022331	ENSPNYG00000022334	sod2 (ENSPNYG00000022342) #20	wtap (ENSPNYG00000022353) #21	acat2 (ENSPNYG00000022364) #22	tcp1 (ENSPNYG00000022378) #24	ENSPNYG00000022434	ENSPNYG00000022442	paplnb (ENSPNYG00000022451)	ENSPNYG00000022461	smek1 (ENSPNYG00000022476)	mycn (ENSPNYG00000022509)	mrpl19 (ENSPNYG00000022512)	ENSPNYG00000022518	efhc1 (ENSPNYG00000022525)	tram2 (ENSPNYG00000022540)	xkr5a (ENSPNYG00000022559)	ENSPNYG00000022569	prep (ENSPNYG00000022582)	lin28b (ENSPNYG00000022590)
Haplochromini_B	ANCESTRAL SPECIES	34	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT01100000263664.b.b	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Zebra mbuna	MODERN SPECIES	1097	sesn1 (ENSMZEG00005018077)	ARMC2 (ENSMZEG00005018080)	ENSMZEG00005018083	ENSMZEG00005018086	foxo3b (ENSMZEG00005018088)	afg1lb (ENSMZEG00005018089)	snx3 (ENSMZEG00005018091)	nr2e1 (ENSMZEG00005018093)	OSTM1 (ENSMZEG00005018095)	ENSMZEG00005018096	otofa (ENSMZEG00005018102)	FNDC1 (ENSMZEG00005018113)	ENSMZEG00005018117	sod2 (ENSMZEG00005018119) #20	wtap (ENSMZEG00005018121) #21	acat2 (ENSMZEG00005018127) #22	tcp1 (ENSMZEG00005018125) #24	PLEKHG1 (ENSMZEG00005018138)	paplnb (ENSMZEG00005018145)	ENSMZEG00005018146	smek1 (ENSMZEG00005018149)	mycn (ENSMZEG00005018153)	mrpl19 (ENSMZEG00005018154)	ENSMZEG00005018157	efhc1 (ENSMZEG00005018159)	tram2 (ENSMZEG00005018161)	xkr5a (ENSMZEG00005018164)	ENSMZEG00005018167	prep (ENSMZEG00005018171)	lin28b (ENSMZEG00005018178)	ENSMZEG00005018179
Eastern happy	MODERN SPECIES	6	cep57l1 (ENSACLG00000020390)	sesn1 (ENSACLG00000020406)	ARMC2 (ENSACLG00000020440)	foxo3b (ENSACLG00000020458)	afg1lb (ENSACLG00000020466)	snx3 (ENSACLG00000020523)	nr2e1 (ENSACLG00000020548)	OSTM1 (ENSACLG00000020598)	ENSACLG00000020606	otofa (ENSACLG00000020643)	FNDC1 (ENSACLG00000020762)	ENSACLG00000020851	ENSACLG00000020862	sod2 (ENSACLG00000020876) #20	wtap (ENSACLG00000020899) #21	acat2 (ENSACLG00000020918) #22	tcp1 (ENSACLG00000020965) #24	PLEKHG1 (ENSACLG00000021076)	paplnb (ENSACLG00000021209)	ENSACLG00000021247	smek1 (ENSACLG00000021261)	mycn (ENSACLG00000021336)	mrpl19 (ENSACLG00000021351)	ENSACLG00000021389	efhc1 (ENSACLG00000021421)	tram2 (ENSACLG00000021448)	xkr5a (ENSACLG00000021490)	ENSACLG00000021497	prep (ENSACLG00000021516)	lin28b (ENSACLG00000021564)	ENSACLG00000021584
Burton s mouthbrooder	MODERN SPECIES	312			sesn1 (ENSHBUG00000013443)	ARMC2 (ENSHBUG00000000398)	foxo3b (ENSHBUG00000000399)	afg1lb (ENSHBUG00000013479)	snx3 (ENSHBUG00000013497)	nr2e1 (ENSHBUG00000013534)	OSTM1 (ENSHBUG00000013547)	drc1 (ENSHBUG00000013557)	otofa (ENSHBUG00000013680)	ENSHBUG00000013701	FNDC1 (ENSHBUG00000013724)	sod2 (ENSHBUG00000013750) #20	wtap (ENSHBUG00000001138) #21	acat2 (ENSHBUG00000013808) #22	tcp1 (ENSHBUG00000013899) #24	PLEKHG1 (ENSHBUG00000013918)	paplnb (ENSHBUG00000013931)	ENSHBUG00000013942	smek1 (ENSHBUG00000014012)	mycn (ENSHBUG00000014040)	mrpl19 (ENSHBUG00000014044)	ENSHBUG00000014054	efhc1 (ENSHBUG00000014062)	tram2 (ENSHBUG00000014095)	xkr5a (ENSHBUG00000014101)	ENSHBUG00000014127	prep (ENSHBUG00000014169)	lin28b (ENSHBUG00000014195)	GRIK2 (ENSHBUG00000014232)
Lyretail cichlid	MODERN SPECIES	314	cep57l1 (ENSNBRG00000019258)	sesn1 (ENSNBRG00000019292)	ARMC2 (ENSNBRG00000019334)	foxo3b (ENSNBRG00000019364)	afg1lb (ENSNBRG00000019375)	snx3 (ENSNBRG00000019406)	nr2e1 (ENSNBRG00000019443)	OSTM1 (ENSNBRG00000019471)	ENSNBRG00000019483	otofa (ENSNBRG00000019524)	ENSNBRG00000019637	ENSNBRG00000019648	ENSNBRG00000019660	sod2 (ENSNBRG00000019677) #20	wtap (ENSNBRG00000019705) #21	acat2 (ENSNBRG00000019737) #22	tcp1 (ENSNBRG00000019787) #24	ENSNBRG00000019846	paplnb (ENSNBRG00000019859)	ENSNBRG00000019894	smek1 (ENSNBRG00000019921)	mycn (ENSNBRG00000019959)	mrpl19 (ENSNBRG00000019970)	ENSNBRG00000019983	efhc1 (ENSNBRG00000019997)	tram2 (ENSNBRG00000020036)	xkr5a (ENSNBRG00000020053)	ENSNBRG00000020082	prep (ENSNBRG00000020096)	lin28b (ENSNBRG00000020118)	GRIK2 (ENSNBRG00000020131)
Nile tilapia	MODERN SPECIES	6	ENSONIG00000035914	cd164 (ENSONIG00000028394)	cep57l1 (ENSONIG00000013303)	sesn1 (ENSONIG00000013301)	ARMC2 (ENSONIG00000013293)	foxo3b (ENSONIG00000013292)	afg1lb (ENSONIG00000013289)	snx3 (ENSONIG00000013287)	nr2e1 (ENSONIG00000013281)	OSTM1 (ENSONIG00000013278)	ENSONIG00000013276	otofa (ENSONIG00000013269)	FNDC1 (ENSONIG00000013266)	sod2 (ENSONIG00000013263) #20	wtap (ENSONIG00000013259) #21	acat2 (ENSONIG00000013255) #22	tcp1 (ENSONIG00000013244) #24	PLEKHG1 (ENSONIG00000013238)	paplnb (ENSONIG00000014740)	ENSONIG00000027132	smek1 (ENSONIG00000014737)	mycn (ENSONIG00000014735)	mrpl19 (ENSONIG00000014731)	ENSONIG00000014730	efhc1 (ENSONIG00000014725)	tram2 (ENSONIG00000014718)	xkr5a (ENSONIG00000014716)	ENSONIG00000014709	prep (ENSONIG00000014707)	lin28b (ENSONIG00000014706)	GRIK2 (ENSONIG00000014701)
Midas cichlid	MODERN SPECIES	271	ppil6 (ENSACIG00000008390)	cd164 (ENSACIG00000008424)	cep57l1 (ENSACIG00000008438)	sesn1 (ENSACIG00000008468)	ARMC2 (ENSACIG00000008500)	foxo3b (ENSACIG00000008588)	afg1lb (ENSACIG00000008668)	snx3 (ENSACIG00000008723)	nr2e1 (ENSACIG00000008784)	OSTM1 (ENSACIG00000008805)	ENSACIG00000008830	otofa (ENSACIG00000008893)	FNDC1 (ENSACIG00000008997)	sod2 (ENSACIG00000009132) #20	wtap (ENSACIG00000009155) #21	acat2 (ENSACIG00000009288) #22	tcp1 (ENSACIG00000009317) #24	ENSACIG00000009358	paplnb (ENSACIG00000009378)	ENSACIG00000009424	smek1 (ENSACIG00000009497)	mycn (ENSACIG00000009541)	mrpl19 (ENSACIG00000009562)	ENSACIG00000009580	ENSACIG00000009591	efhc1 (ENSACIG00000009608)	tram2 (ENSACIG00000009677)	xkr5a (ENSACIG00000009725)	ENSACIG00000009747	prep (ENSACIG00000009776)	lin28b (ENSACIG00000009818)
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a.k	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Tongue sole	MODERN SPECIES	17	hsp90aa1.1 (ENSCSEG00000000594)	hsp90aa1.2 (ENSCSEG00000000515)	ppp2r5cb (ENSCSEG00000000502)	DIO3 (ENSCSEG00000000497)	slc25a47a (ENSCSEG00000000494)	slc25a29 (ENSCSEG00000000487)	vrtn (ENSCSEG00000000482)	ENSCSEG00000000478	dll4 (ENSCSEG00000000474)	chac1 (ENSCSEG00000000472)	ENSCSEG00000000466	otofa (ENSCSEG00000000441)	ENSCSEG00000000434	sod2 (ENSCSEG00000000427) #20	wtap (ENSCSEG00000000408) #21	acat2 (ENSCSEG00000000403) #22	tcp1 (ENSCSEG00000000387) #24	efhc1 (ENSCSEG00000000379)	efhc1 (ENSCSEG00000000362)	ENSCSEG00000000354	mrpl19 (ENSCSEG00000000349)	mycn (ENSCSEG00000000346)	smek1 (ENSCSEG00000000332)	ENSCSEG00000000321	paplnb (ENSCSEG00000000314)	lin28b (ENSCSEG00000000312)	prep (ENSCSEG00000000307)	ENSCSEG00000000305	xkr5a (ENSCSEG00000000301)	tram2 (ENSCSEG00000000292)	PLEKHG1 (ENSCSEG00000000275)
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000180577	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b
Greater amberjack	MODERN SPECIES	10	ppil6 (ENSSDUG00000019625)	cd164 (ENSSDUG00000019642)	cep57l1 (ENSSDUG00000019647)	sesn1 (ENSSDUG00000019665)	ARMC2 (ENSSDUG00000019699)	foxo3b (ENSSDUG00000019718)	afg1lb (ENSSDUG00000019727)	snx3 (ENSSDUG00000019760)	nr2e1 (ENSSDUG00000019776)	OSTM1 (ENSSDUG00000019798)	drc1 (ENSSDUG00000019839)	otofa (ENSSDUG00000019875)	FNDC1 (ENSSDUG00000019950)	sod2 (ENSSDUG00000020057) #20	wtap (ENSSDUG00000020070) #21	acat2 (ENSSDUG00000000092) #22	tcp1 (ENSSDUG00000000173) #24	PLEKHG1 (ENSSDUG00000000241)	ENSSDUG00000000256	paplnb (ENSSDUG00000000272)	ENSSDUG00000000320	smek1 (ENSSDUG00000000333)	ENSSDUG00000000392	mycn (ENSSDUG00000000413)	mrpl19 (ENSSDUG00000000420)	efhc1 (ENSSDUG00000000447)	tram2 (ENSSDUG00000000462)	xkr5a (ENSSDUG00000000511)	ENSSDUG00000000524	prep (ENSSDUG00000000552)	lin28b (ENSSDUG00000000613)
Yellowtail amberjack	MODERN SPECIES	2272													FNDC1 (ENSSLDG00000005130)	sod2 (ENSSLDG00000005197) #20	wtap (ENSSLDG00000005241) #21	acat2 (ENSSLDG00000005309) #22	tcp1 (ENSSLDG00000005262) #24	PLEKHG1 (ENSSLDG00000005370)
Barramundi perch	MODERN SPECIES	66										drc1 (ENSLCAG00010018869)	ENSLCAG00010018863	otofa (ENSLCAG00010018817)	FNDC1 (ENSLCAG00010018791)	sod2 (ENSLCAG00010018771) #20	wtap (ENSLCAG00010018762) #21	acat2 (ENSLCAG00010018750) #22	tcp1 (ENSLCAG00010018702) #24	PLEKHG1 (ENSLCAG00010018681)	paplnb (ENSLCAG00010018672)	ENSLCAG00010018662	smek1 (ENSLCAG00010018636)	ENSLCAG00010018621	ENSLCAG00010018617	mrpl19 (ENSLCAG00010018614)	ENSLCAG00010018604	efhc1 (ENSLCAG00010018596)	tram2 (ENSLCAG00010018539)	xkr5a (ENSLCAG00010018520)	ENSLCAG00010018515	prep (ENSLCAG00010018417)	lin28b (ENSLCAG00010018392)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Climbing perch	MODERN SPECIES	15	PPIL6 (ENSATEG00000013027)	cd164 (ENSATEG00000013091)	cep57l1 (ENSATEG00000013115)	sesn1 (ENSATEG00000013150)	ARMC2 (ENSATEG00000013216)	foxo3b (ENSATEG00000013282)	afg1lb (ENSATEG00000013291)	snx3 (ENSATEG00000028012)	nr2e1 (ENSATEG00000013336)	OSTM1 (ENSATEG00000013366)	ENSATEG00000013422	otofa (ENSATEG00000013468)	FNDC1 (ENSATEG00000025404)	sod2 (ENSATEG00000013630) #20	wtap (ENSATEG00000013657) #21	acat2 (ENSATEG00000013681) #22	TCP1 (ENSATEG00000013715) #24	ENSATEG00000013758	paplnb (ENSATEG00000013766)	ENSATEG00000026335	ENSATEG00000013845	mycn (ENSATEG00000029948)	ENSATEG00000013886	ENSATEG00000027883	ENSATEG00000013913	tram2 (ENSATEG00000013975)	xkr5a (ENSATEG00000014004)	ENSATEG00000014034	prep (ENSATEG00000014056)	ENSATEG00000014088	ENSATEG00000014169
Zig-zag eel	MODERN SPECIES	16	PPIL6 (ENSMAMG00000007446)	cd164 (ENSMAMG00000007441)	cep57l1 (ENSMAMG00000007432)	sesn1 (ENSMAMG00000007399)	ARMC2 (ENSMAMG00000007384)	foxo3b (ENSMAMG00000007377)	afg1lb (ENSMAMG00000025589)	snx3 (ENSMAMG00000007349)	nr2e1 (ENSMAMG00000007321)	OSTM1 (ENSMAMG00000007316)	ENSMAMG00000007292	otofa (ENSMAMG00000007209)	FNDC1 (ENSMAMG00000007183)	sod2 (ENSMAMG00000007154) #20	wtap (ENSMAMG00000027304) #21	acat2 (ENSMAMG00000007108) #22	TCP1 (ENSMAMG00000007085) #24	ENSMAMG00000007068	paplnb (ENSMAMG00000007053)	ENSMAMG00000006967	ENSMAMG00000006925	mycn (ENSMAMG00000006908)	ENSMAMG00000006902	ENSMAMG00000006878	efhc1 (ENSMAMG00000006869)	tram2 (ENSMAMG00000024315)	xkr5a (ENSMAMG00000006796)	ENSMAMG00000006790	prep (ENSMAMG00000006757)	ENSMAMG00000006635	ENSMAMG00000006597
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00990000211308	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Tetraodon	MODERN SPECIES	5	ppil6 (ENSTNIG00000012274)	cd164 (ENSTNIG00000012275)	cep57l1 (ENSTNIG00000012276)	sesn1 (ENSTNIG00000012277)	ARMC2 (ENSTNIG00000012278)	ENSTNIG00000012279	afg1lb (ENSTNIG00000012280)	snx3 (ENSTNIG00000012281)	nr2e1 (ENSTNIG00000012282)	ENSTNIG00000012283	otofa (ENSTNIG00000012284)	ENSTNIG00000012285	ENSTNIG00000012286	sod2 (ENSTNIG00000012287) #20	wtap (ENSTNIG00000012288) #21	acat2 (ENSTNIG00000012289) #22	tcp1 (ENSTNIG00000012290) #24	PLEKHG1 (ENSTNIG00000012291)	ENSTNIG00000012292	ENSTNIG00000012293	mycn (ENSTNIG00000012294)	mrpl19 (ENSTNIG00000012295)	ENSTNIG00000012296	efhc1 (ENSTNIG00000012297)	tram2 (ENSTNIG00000012298)	xkr5a (ENSTNIG00000012299)	ENSTNIG00000012300	ENSTNIG00000001052	prep (ENSTNIG00000012301)	lin28b (ENSTNIG00000012302)	GRIK2 (ENSTNIG00000012303)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Ballan wrasse	MODERN SPECIES	52	cd164 (ENSLBEG00000014634)	cep57l1 (ENSLBEG00000014613)	sesn1 (ENSLBEG00000014585)	ENSLBEG00000014553	ARMC2 (ENSLBEG00000014525)	foxo3b (ENSLBEG00000014513)	afg1lb (ENSLBEG00000014493)	snx3 (ENSLBEG00000014465)	nr2e1 (ENSLBEG00000014424)	OSTM1 (ENSLBEG00000014388)	ENSLBEG00000014359	otofa (ENSLBEG00000014067)	ENSLBEG00000013873	sod2 (ENSLBEG00000013851) #20	wtap (ENSLBEG00000013802) #21	acat2 (ENSLBEG00000013733) #22	ENSLBEG00000013623 #24	tcp1 (ENSLBEG00000013564) #24	PLEKHG1 (ENSLBEG00000013520)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Perciformes	ANCESTRAL SPECIES	14	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Pike perch	MODERN SPECIES	4	ppil6 (ENSSLUG00000007643)	cd164 (ENSSLUG00000007638)	cep57l1 (ENSSLUG00000007623)	sesn1 (ENSSLUG00000007600)	ARMC2 (ENSSLUG00000007561)	foxo3b (ENSSLUG00000007540)	afg1lb (ENSSLUG00000007525)	snx3 (ENSSLUG00000007519)	nr2e1 (ENSSLUG00000007504)	OSTM1 (ENSSLUG00000007499)	drc1 (ENSSLUG00000007488)	otofa (ENSSLUG00000006951)	FNDC1 (ENSSLUG00000006833)	sod2 (ENSSLUG00000006819) #20	wtap (ENSSLUG00000006806) #21	acat2 (ENSSLUG00000006773) #22	tcp1 (ENSSLUG00000006740) #24	PLEKHG1 (ENSSLUG00000006706)	paplnb (ENSSLUG00000006688)	ENSSLUG00000006670	smek1 (ENSSLUG00000006567)	mycn (ENSSLUG00000006464)	mrpl19 (ENSSLUG00000006444)	ENSSLUG00000006429	efhc1 (ENSSLUG00000006412)	tram2 (ENSSLUG00000006387)	xkr5a (ENSSLUG00000006372)	ENSSLUG00000006356	prep (ENSSLUG00000006096)	lin28b (ENSSLUG00000006062)	GRIK2 (ENSSLUG00000005914)
Channel bull blenny	MODERN SPECIES	16	ppil6 (ENSCGOG00000006022)	cd164 (ENSCGOG00000006021)	cep57l1 (ENSCGOG00000006019)	sesn1 (ENSCGOG00000006017)	ARMC2 (ENSCGOG00000006007)	foxo3b (ENSCGOG00000006004)	afg1lb (ENSCGOG00000005998)	snx3 (ENSCGOG00000005941)	nr2e1 (ENSCGOG00000005949)	ENSCGOG00000005938	drc1 (ENSCGOG00000005935)	otofa (ENSCGOG00000005248)	FNDC1 (ENSCGOG00000005216)	sod2 (ENSCGOG00000005042) #20	wtap (ENSCGOG00000004978) #21	acat2 (ENSCGOG00000004647) #22	tcp1 (ENSCGOG00000003796) #24	PLEKHG1 (ENSCGOG00000003765)	paplnb (ENSCGOG00000003759)	ENSCGOG00000003736	smek1 (ENSCGOG00000002846)	mycn (ENSCGOG00000024712)	mrpl19 (ENSCGOG00000024711)	ENSCGOG00000024710	efhc1 (ENSCGOG00000024709)	tram2 (ENSCGOG00000024708)	xkr5a (ENSCGOG00000024706)	ENSCGOG00000024705	prep (ENSCGOG00000024704)	lin28b (ENSCGOG00000024703)	GRIK2 (ENSCGOG00000024687)
Cottioidei	ANCESTRAL SPECIES	25	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000178331	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000173939	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000178209	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b
Lumpfish	MODERN SPECIES	16	ppil6 (ENSCLMG00005016579)	cd164 (ENSCLMG00005016582)	cep57l1 (ENSCLMG00005016585)	sesn1 (ENSCLMG00005016589)	ARMC2 (ENSCLMG00005016590)	ENSCLMG00005016591	foxo3b (ENSCLMG00005016594)	afg1lb (ENSCLMG00005016596)	snx3 (ENSCLMG00005016599)	nr2e1 (ENSCLMG00005016608)	OSTM1 (ENSCLMG00005016616)	otofa (ENSCLMG00005016621)	FNDC1 (ENSCLMG00005016626)	sod2 (ENSCLMG00005016631) #20	wtap (ENSCLMG00005016640) #21	acat2 (ENSCLMG00005016642) #22	tcp1 (ENSCLMG00005016643) #24	ENSCLMG00005016650	PLEKHG1 (ENSCLMG00005016652)	paplnb (ENSCLMG00005016654)	ENSCLMG00005016660	smek1 (ENSCLMG00005016666)	mycn (ENSCLMG00005016668)	mrpl19 (ENSCLMG00005016679)	ENSCLMG00005016681	ENSCLMG00005016683	efhc1 (ENSCLMG00005016685)	tram2 (ENSCLMG00005017015)	xkr5a (ENSCLMG00005017019)	ENSCLMG00005017020	prep (ENSCLMG00005017023)
Stickleback	MODERN SPECIES	18	GEN1 (ENSGACG00000008868)	ppil6 (ENSGACG00000008871)	cd164 (ENSGACG00000008876)	cep57l1 (ENSGACG00000008882)	sesn1 (ENSGACG00000008895)	ARMC2 (ENSGACG00000008903)	foxo3b (ENSGACG00000008910)	afg1lb (ENSGACG00000008916)	snx3 (ENSGACG00000008921)	nr2e1 (ENSGACG00000008934)	ENSGACG00000008950	otofa (ENSGACG00000008956)	FNDC1 (ENSGACG00000008978)	sod2 (ENSGACG00000009000) #20	wtap (ENSGACG00000009045) #21	acat2 (ENSGACG00000009052) #22	tcp1 (ENSGACG00000009066) #24	PLEKHG1 (ENSGACG00000009204)	ENSGACG00000009211	paplnb (ENSGACG00000009212)	ERH (ENSGACG00000009220)	smek1 (ENSGACG00000009228)	mycn (ENSGACG00000009241)	mrpl19 (ENSGACG00000009248)	ENSGACG00000009272	efhc1 (ENSGACG00000009276)	tram2 (ENSGACG00000009285)	xkr5a (ENSGACG00000009350)	ENSGACG00000009358	prep (ENSGACG00000009366)	lin28b (ENSGACG00000009428)
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663	ENSGT00940000161401	ENSGT00390000013227.a.b	ENSGT00940000153609.b	ENSGT00940000156693	ENSGT00390000012341	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B #22	ENSGT00550000074878 #24	ENSGT00940000157723	ENSGT00940000156891.a.b	ENSGT00390000003316.c.a	ENSGT00390000018199.a	ENSGT00940000158432	ENSGT00390000009415	ENSGT00940000154096.b.b.a	ENSGT00530000063528.A.a	ENSGT00510000046470.a.b	ENSGT01070000253766.A.a.a.b.a.b	ENSGT00940000154798.a.d.b	ENSGT00530000063426.b.b	ENSGT00940000153295.b	ENSGT00940000155610.o.a
European seabass	MODERN SPECIES	7	ENSDLAG00005030866	PPIL6 (ENSDLAG00005026853)	cep57l1 (ENSDLAG00005034480)	sesn1 (ENSDLAG00005020385)	ARMC2 (ENSDLAG00005020331)	foxo3b (ENSDLAG00005020324)	afg1lb (ENSDLAG00005020306)	snx3 (ENSDLAG00005029627)	nr2e1 (ENSDLAG00005020195)	OSTM1 (ENSDLAG00005020161)	ENSDLAG00005020122	otofa (ENSDLAG00005019390)	FNDC1 (ENSDLAG00005019303)	sod2 (ENSDLAG00005019276) #20	wtap (ENSDLAG00005019235) #21	acat2 (ENSDLAG00005019106) #22	TCP1 (ENSDLAG00005019069) #24	ENSDLAG00005019041	paplnb (ENSDLAG00005030947)	ENSDLAG00005027281	ENSDLAG00005018898	mycn (ENSDLAG00005026718)	ENSDLAG00005018839	ENSDLAG00005028887	efhc1 (ENSDLAG00005018822)	xkr5a (ENSDLAG00005029326)	ENSDLAG00005018660	ENSDLAG00005027424	ENSDLAG00005016885	ENSDLAG00005005046	ENSDLAG00005016828
Large yellow croaker	MODERN SPECIES	482	ppil6 (ENSLCRG00005007738)	cd164 (ENSLCRG00005007736)	cep57l1 (ENSLCRG00005007735)	sesn1 (ENSLCRG00005007734)	ARMC2 (ENSLCRG00005007733)	foxo3b (ENSLCRG00005007732)	afg1lb (ENSLCRG00005007731)	snx3 (ENSLCRG00005007729)	nr2e1 (ENSLCRG00005007723)	OSTM1 (ENSLCRG00005007722)	drc1 (ENSLCRG00005007721)	otofa (ENSLCRG00005007205)	FNDC1 (ENSLCRG00005007194)	sod2 (ENSLCRG00005007192) #20	wtap (ENSLCRG00005007191) #21	acat2 (ENSLCRG00005007190) #22	tcp1 (ENSLCRG00005007185) #24	PLEKHG1 (ENSLCRG00005007177)	paplnb (ENSLCRG00005007170)	ENSLCRG00005007167	ENSLCRG00005007166	smek1 (ENSLCRG00005007143)	mycn (ENSLCRG00005007105)	mrpl19 (ENSLCRG00005007103)	ENSLCRG00005007101	efhc1 (ENSLCRG00005007099)	tram2 (ENSLCRG00005006604)	xkr5a (ENSLCRG00005006598)	ENSLCRG00005006593	prep (ENSLCRG00005006387)	lin28b (ENSLCRG00005006382)
Gilthead seabream	MODERN SPECIES	14	ppil6 (ENSSAUG00010009611)	cd164 (ENSSAUG00010009609)	cep57l1 (ENSSAUG00010009608)	sesn1 (ENSSAUG00010009605)	ARMC2 (ENSSAUG00010009600)	foxo3b (ENSSAUG00010009595)	afg1lb (ENSSAUG00010009573)	snx3 (ENSSAUG00010009568)	nr2e1 (ENSSAUG00010009563)	OSTM1 (ENSSAUG00010009560)	drc1 (ENSSAUG00010009552)	otofa (ENSSAUG00010009331)	FNDC1 (ENSSAUG00010009326)	sod2 (ENSSAUG00010009320) #20	wtap (ENSSAUG00010009317) #21	acat2 (ENSSAUG00010008737) #22	tcp1 (ENSSAUG00010008729) #24	PLEKHG1 (ENSSAUG00010016638)	paplnb (ENSSAUG00010016633)	ERH (ENSSAUG00010016632)	smek1 (ENSSAUG00010015958)	mycn (ENSSAUG00010015944)	mrpl19 (ENSSAUG00010015939)	ENSSAUG00010015932	efhc1 (ENSSAUG00010015930)	tram2 (ENSSAUG00010015861)	xkr5a (ENSSAUG00010015857)	ENSSAUG00010015854	prep (ENSSAUG00010015819)	lin28b (ENSSAUG00010015808)	GRIK2 (ENSSAUG00010015544)
Pinecone sodierfish	MODERN SPECIES	16	cd164 (ENSMMDG00005002696)	cep57l1 (ENSMMDG00005002680)	sesn1 (ENSMMDG00005002663)	ARMC2 (ENSMMDG00005002639)	ENSMMDG00005002632	foxo3b (ENSMMDG00005002624)	afg1lb (ENSMMDG00005002572)	snx3 (ENSMMDG00005002559)	nr2e1 (ENSMMDG00005023129)	OSTM1 (ENSMMDG00005023128)	drc1 (ENSMMDG00005023125)	otofa (ENSMMDG00005023012)	FNDC1 (ENSMMDG00005022994)	sod2 (ENSMMDG00005022866) #20	wtap (ENSMMDG00005022860) #21	acat2 (ENSMMDG00005022853) #22	tcp1 (ENSMMDG00005022846) #24	PLEKHG1 (ENSMMDG00005022840)	paplnb (ENSMMDG00005022838)	ENSMMDG00005022836	smek1 (ENSMMDG00005022460)	mycn (ENSMMDG00005022449)	mrpl19 (ENSMMDG00005022448)	ENSMMDG00005022447	ENSMMDG00005022446	efhc1 (ENSMMDG00005022444)	tram2 (ENSMMDG00005022412)	xkr5a (ENSMMDG00005022407)	ENSMMDG00005022404	prep (ENSMMDG00005022389)	lin28b (ENSMMDG00005022386)
Cod	MODERN SPECIES	13	ENSGMOG00000007002	ENSGMOG00000013767	ENSGMOG00000013745	efhc1 (ENSGMOG00000013731)	ENSGMOG00000026789	ENSGMOG00000013706	mycn (ENSGMOG00000025424)	smek1 (ENSGMOG00000001099)	ENSGMOG00000001125	paplnb (ENSGMOG00000001137)	drc1 (ENSGMOG00000001177)	otofa (ENSGMOG00000001446)	FNDC1 (ENSGMOG00000001515)	sod2 (ENSGMOG00000001602) #20	wtap (ENSGMOG00000001613) #21	acat2 (ENSGMOG00000001630) #22	TCP1 (ENSGMOG00000001647) #24	ENSGMOG00000022936	OSTM1 (ENSGMOG00000016051)	nr2e1 (ENSGMOG00000016036)	snx3 (ENSGMOG00000016029)	afg1lb (ENSGMOG00000016004)	ENSGMOG00000024666	foxo3b (ENSGMOG00000035821)	ARMC2 (ENSGMOG00000005690)	sesn1 (ENSGMOG00000005675)	ENSGMOG00000022278	cep57l1 (ENSGMOG00000014394)	cd164 (ENSGMOG00000022181)	PPIL6 (ENSGMOG00000014325)	ENSGMOG00000014295
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.a #22
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2187																ENSOTSG00005020842 #22
Chinook salmon	MODERN SPECIES	2546																ENSOTSG00005018782 #22
Chinook salmon	MODERN SPECIES	2379																ENSOTSG00005021283 #22
Chinook salmon	MODERN SPECIES	2860																ENSOTSG00005021101 #22
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Huchen	MODERN SPECIES	11378																ENSHHUG00000015226 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.a #22
Chinook salmon	MODERN SPECIES	2856																ENSOTSG00005021094 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.B.tb.b.b #22
Chinook salmon	MODERN SPECIES	2772																ENSOTSG00005019688 #22
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000156484.b.e.a	ENSGT00940000166633	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B.k	ENSGT00390000011877 #20	ENSGT00390000013931 #21	ENSGT01030000234626.B.ub #22	ENSGT00950000182941.a.a.a.b	ENSGT00940000167949	ENSGT00550000074878 #24	ENSGT00940000157723.q.a	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00740000115564
Salmoninae	ANCESTRAL SPECIES	56															ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #24	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00940000161401.m.a.b	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c
Huchen	MODERN SPECIES	3655															wtap (ENSHHUG00000050140) #21	acat2 (ENSHHUG00000050167) #22	tcp1 (ENSHHUG00000050195) #24	PLEKHG1 (ENSHHUG00000050243)
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000174827	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT00390000011892.g.b	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #24	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000174827	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT00390000011892.g.b	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #24	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.b	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000120004	KLHL29 (ENSSSAG00000066276)	atad2b (ENSSSAG00000062770)	ENSSSAG00000118824	ubxn2a (ENSSSAG00000084988)	mfsd2b (ENSSSAG00000062498)	cssa06h2orf44 (ENSSSAG00000062468)	fkbp1b (ENSSSAG00000097867)	mmut (ENSSSAG00000062142)	opn8b (ENSSSAG00000101895)	opn8a (ENSSSAG00000062094)	otofa (ENSSSAG00000061721)	ENSSSAG00000091891	FNDC1 (ENSSSAG00000008223)	wtap (ENSSSAG00000095056) #21	acat2 (ENSSSAG00000096175) #22	TCPA (ENSSSAG00000008240) #24	plekhg1 (ENSSSAG00000008287)	ostm1 (ENSSSAG00000008297)	ENSSSAG00000114269	nr2e1 (ENSSSAG00000090271)	snx3 (ENSSSAG00000110792)	lace1 (ENSSSAG00000008348)	ENSSSAG00000109266	foxo3b (ENSSSAG00000092355)	sesn1 (ENSSSAG00000008383)	cep57l1 (ENSSSAG00000008398)	cd164 (ENSSSAG00000098472)	PPIL6 (ENSSSAG00000109308)	AK9 (ENSSSAG00000008446)	FIG4 (ENSSSAG00000008552)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00440000033970.j	ENSGT00390000005826.a.b.h.b.b	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #24	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000030287	KLHL29 (ENSOMYG00000030279)	ENSOMYG00000076604	ENSOMYG00000072966	ATAD2B (ENSOMYG00000030187)	UBXN2A (ENSOMYG00000029910)	mfsd2b (ENSOMYG00000029875)	wdcp (ENSOMYG00000029845)	fkbp1b (ENSOMYG00000029818)	opn8b (ENSOMYG00000029802)	opn8a (ENSOMYG00000060304)	otofa (ENSOMYG00000029543)	ENSOMYG00000070248	FNDC1 (ENSOMYG00000019136)	wtap (ENSOMYG00000019164) #21	acat2 (ENSOMYG00000019218) #22	TCP1 (ENSOMYG00000019333) #24	ENSOMYG00000049071	ENSOMYG00000072136	OSTM1 (ENSOMYG00000019402)	nr2e1 (ENSOMYG00000019420)	snx3 (ENSOMYG00000019434)	afg1lb (ENSOMYG00000019501)	foxo3b (ENSOMYG00000062959)	sesn1 (ENSOMYG00000008399)	cep57l1 (ENSOMYG00000008571)	cd164 (ENSOMYG00000008587)	PPIL6 (ENSOMYG00000008614)	ENSOMYG00000069564	AK9 (ENSOMYG00000008741)	FIG4 (ENSOMYG00000009720)
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00440000033970.j	ENSGT00390000005826.a.b.h.b.b	ENSGT00950000182986.a.b.a.g.b	ENSGT00940000158824.h	ENSGT00550000074694.b.n	ENSGT00520000055567.a.b	ENSGT00390000005318.b.b.a.j	ENSGT00390000001660.n	ENSGT00940000153311.a.b.b.f	ENSGT01100000263524.C	ENSGT01100000263524.D.d.f	ENSGT00940000155086.B.e	ENSGT00940000166976	ENSGT00530000063558.B.l	ENSGT00390000013931.m.b #21	ENSGT01030000234626.B.ub #22	ENSGT00550000074878.ib.b #24	ENSGT00940000157723.q.a	ENSGT00390000012341.c	ENSGT00940000156693.e	ENSGT00940000153609.b.db	ENSGT00390000013227.a.b	ENSGT00940000161401.m.a.a.a	ENSGT00950000183168.B.b.a	ENSGT00530000063695.b	ENSGT00530000063929.a.b.d	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943	ENSGT01060000248564.b.a.a.b.c	ENSGT00950000182962.b.b.g.b
Coho salmon	MODERN SPECIES	13	ENSOKIG00005037007	ENSOKIG00005036988	KLHL29 (ENSOKIG00005036875)	ATAD2B (ENSOKIG00005034612)	UBXN2A (ENSOKIG00005034497)	mfsd2b (ENSOKIG00005034453)	wdcp (ENSOKIG00005034446)	ENSOKIG00005034442	fkbp1b (ENSOKIG00005034435)	opn8b (ENSOKIG00005034393)	opn8a (ENSOKIG00005034318)	otofa (ENSOKIG00005033769)	ENSOKIG00005033737	ENSOKIG00005033712	wtap (ENSOKIG00005033642) #21	acat2 (ENSOKIG00005033499) #22	tcp1 (ENSOKIG00005033362) #24	PLEKHG1 (ENSOKIG00005033330)	OSTM1 (ENSOKIG00005033299)	nr2e1 (ENSOKIG00005033251)	snx3 (ENSOKIG00005033236)	afg1lb (ENSOKIG00005033050)	foxo3b (ENSOKIG00005033024)	sesn1 (ENSOKIG00005032944)	cep57l1 (ENSOKIG00005032917)	ENSOKIG00005032909	cd164 (ENSOKIG00005032898)	ppil6 (ENSOKIG00005032863)	AK9 (ENSOKIG00005032809)	FIG4 (ENSOKIG00005031318)	GPR6 (ENSOKIG00005031232)
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005023958	sash1a (ENSOTSG00005023959)	ENSOTSG00005023960	sesn1 (ENSOTSG00005023962)	cep57l1 (ENSOTSG00005023964)	cd164 (ENSOTSG00005023965)	ppil6 (ENSOTSG00005023966)	AK9 (ENSOTSG00005023967)	FIG4 (ENSOTSG00005023974)	ENSOTSG00005026615	cdc40 (ENSOTSG00005026617)	METTL24 (ENSOTSG00005027822)	ENSOTSG00005027823	ENSOTSG00005027826	wtap (ENSOTSG00005027828) #21	acat2 (ENSOTSG00005027838) #22	tcp1 (ENSOTSG00005027849) #24	ENSOTSG00005027876	ENSOTSG00005027877	OSTM1 (ENSOTSG00005027879)	nr2e1 (ENSOTSG00005027881)	snx3 (ENSOTSG00005027886)	afg1lb (ENSOTSG00005027891)	foxo3b (ENSOTSG00005027893)	ENSOTSG00005027894	otofa (ENSOTSG00005027900)	opn8a (ENSOTSG00005028167)	opn8b (ENSOTSG00005028182)	fkbp1b (ENSOTSG00005028184)	wdcp (ENSOTSG00005028189)	mfsd2b (ENSOTSG00005028192)
Northern pike	MODERN SPECIES	17	dynlt1 (ENSELUG00000017953)	ENSELUG00000017945	ENSELUG00000029928	gtf2h5 (ENSELUG00000000724)	serac1 (ENSELUG00000017822)	myct1a (ENSELUG00000032763)	ENSELUG00000027437	esr1 (ENSELUG00000000670)	armt1 (ENSELUG00000000664)	ENSELUG00000029127	zbtb2b (ENSELUG00000000662)	ENSELUG00000017427	mthfd1l (ENSELUG00000017415)	stx11b.2 (ENSELUG00000017392)	STX11 (ENSELUG00000017388)	acat2 (ENSELUG00000017338) #22	tcp1 (ENSELUG00000017365) #24	PLEKHG1 (ENSELUG00000017280)	OSTM1 (ENSELUG00000017212)	nr2e1 (ENSELUG00000017172)	snx3 (ENSELUG00000017150)	afg1lb (ENSELUG00000017123)	foxo3b (ENSELUG00000017092)	ARMC2 (ENSELUG00000017071)	sesn1 (ENSELUG00000017036)	cep57l1 (ENSELUG00000016989)	cd164 (ENSELUG00000016948)	ppil6 (ENSELUG00000016932)	slc22a16 (ENSELUG00000016920)	METTL24 (ENSELUG00000016901)	ENSELUG00000028462
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	6																acat2 (ENSCMIG00000000048) #22
Elephant shark	MODERN SPECIES	1678																ENSCMIG00000013172 #22	ENSCMIG00000013173	dkk2 (ENSCMIG00000013175)	papss1 (ENSCMIG00000013272)	sgms2b (ENSCMIG00000013466)	ENSCMIG00000013474	IDUA (ENSCMIG00000013490)	slc26a1 (ENSCMIG00000013495)	rbp4l (ENSCMIG00000013498)	ENSCMIG00000013507	ENSCMIG00000013516	MYL5 (ENSCMIG00000013521)	nkx6.1 (ENSCMIG00000013524)	ENSCMIG00000013530	ENSCMIG00000013533	ENSCMIG00000013536
Elephant shark	MODERN SPECIES	1513	ENSCMIG00000000948	psma3 (ENSCMIG00000001027)	arid4a (ENSCMIG00000001314)	ENSCMIG00000001560	timm9 (ENSCMIG00000001565)	ENSCMIG00000001573	ENSCMIG00000001587	irf2bpl (ENSCMIG00000001619)	dact1 (ENSCMIG00000001648) ##9	ENSCMIG00000001652	daam1b (ENSCMIG00000001686)	L3HYPDH (ENSCMIG00000001723)	jkamp (ENSCMIG00000001735)	ENSCMIG00000001750	ENSCMIG00000001771	acat2 (ENSCMIG00000001776) #22	LRFN5 (ENSCMIG00000001782)	gemin2 (ENSCMIG00000001812)	trappc6b (ENSCMIG00000001830)	pnn (ENSCMIG00000001851)	ENSCMIG00000001900	FBXO33 (ENSCMIG00000001932)	zgc:153383 (ENSCMIG00000001938)	ppp2r3c (ENSCMIG00000001986)	ENSCMIG00000002136	psma6 (ENSCMIG00000002150)	ENSCMIG00000002185	INSM2 (ENSCMIG00000002193)	RALGAPA1 (ENSCMIG00000002242)	brms1la (ENSCMIG00000002308)	MBIP (ENSCMIG00000002316)
Elephant shark	MODERN SPECIES	1666	ENSCMIG00000005950	MTRF1 (ENSCMIG00000005951)	rgcc (ENSCMIG00000005954)	vwa8 (ENSCMIG00000005995)	DGKH (ENSCMIG00000006217)	AKAP11 (ENSCMIG00000006334)	ENSCMIG00000006340	DNAJC15 (ENSCMIG00000006344)	ENOX1 (ENSCMIG00000006352)	wdfy2 (ENSCMIG00000006385)	ENSCMIG00000006436	serpine3 (ENSCMIG00000006536)	FAM124A (ENSCMIG00000006538)	ENSCMIG00000006554	rnaseh2b (ENSCMIG00000006591)	acat2 (ENSCMIG00000006595) #22
Elephant shark	MODERN SPECIES	1976																acat2 (ENSCMIG00000002596) #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Hagfish	MODERN SPECIES	1422	ENSEBUG00000000553	ISYNA1 (ENSEBUG00000005416)	ENSEBUG00000006498	ENSEBUG00000003390	ENSEBUG00000006219	ENSEBUG00000009648	PARP16 (ENSEBUG00000001358)	zgc:86811 (ENSEBUG00000016184)	ENSEBUG00000001321	TMC3 (ENSEBUG00000004013)	ENSEBUG00000000654	ENSEBUG00000007646	ENSEBUG00000000625	ENSEBUG00000005908	SMAD3 (ENSEBUG00000015275)	acat2 (ENSEBUG00000005716) #22	DYM (ENSEBUG00000009896)	ENSEBUG00000007836	flad1 (ENSEBUG00000003057)	polr3c (ENSEBUG00000015243)	ENSEBUG00000003957	ENSEBUG00000013754	ENSEBUG00000010819	ENSEBUG00000013982	ENSEBUG00000005814	ENSEBUG00000015354	pomt2 (ENSEBUG00000003103)	ENSEBUG00000010096	rrad (ENSEBUG00000011084)	ENSEBUG00000011798
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01030000234626.B #22
Fruitfly	MODERN SPECIES	18	CG33966 (FBgn0053966)	galene (FBgn0035192)	CG9192 (FBgn0035193)	Klp61F (FBgn0004378)	CG32318 (FBgn0052318)	Psf1 (FBgn0035194)	Sac1 (FBgn0283500)	Bfc (FBgn0035196)	CG9130 (FBgn0035197)	CG9133 (FBgn0035198)	tfc (FBgn0035199)	CG32333 (FBgn0052333)	Rabex-5 (FBgn0262937)	scf (FBgn0025682)	Rac1 (FBgn0010333)	Acat2 (FBgn0035203) #22	Nt5a (FBgn0035204)	Ctr9 (FBgn0035205)	sturkopf (FBgn0035206)	Herc4 (FBgn0035207)	Myo61F (FBgn0010246)	CG9184 (FBgn0035208)	ND-ACP (FBgn0011361)	msd1 (FBgn0035209)	msd5 (FBgn0035210)	CG2211 (FBgn0035211)	l(3)02640 (FBgn0010786)	CG2199 (FBgn0035213)	Ptp61F (FBgn0267487)	CG9166 (FBgn0029514)	ru (FBgn0003295)
Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01030000234626.C ##22
Yeast	MODERN SPECIES	4	SLN1 (YIL147C)	RPL40A (YIL148W)	MLP2 (YIL149C)	MCM10 (YIL150C)	ESL1 (YIL151C)	YIL152W	RRD1 (YIL153W)	YIL154C	GUT2 (YIL155C)	UBP7 (YIL156W)	YIL156W-B	YIL156W-A	COA1 (YIL157C)	AIM20 (YIL158W)	BNR1 (YIL159W)	POT1 (YIL160C) ##22	YIL161W	SUC2 (YIL162W)	YIL163C	NIT1 (YIL164C)	YIL165C	YIL166C	YIL169C	YIL171W-A	IMA3 (YIL172C)	VTH1 (YIL173W)	PAU14 (YIL176C)	YIL177W-A	YIL177C
Bilateria	ANCESTRAL SPECIES																	ENSGT01030000234626.C ##22
Chordata	ANCESTRAL SPECIES																	ENSGT01030000234626.C ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234626.C ##22
Cyclostomata	ANCESTRAL SPECIES	660																ENSGT01030000234626.C ##22	ENSGT00390000012820
Lamprey	MODERN SPECIES	400												A3GALT2 (ENSPMAG00000009878)	ankrd13b (ENSPMAG00000009877)	ENSPMAG00000009876	nxn (ENSPMAG00000009875)	acaa1 (ENSPMAG00000009874) ##22	ENSPMAG00000009873	ENSPMAG00000009872	cyp27a3 (ENSPMAG00000009871)	bcs1l (ENSPMAG00000009870)	ENSPMAG00000009869	ENSPMAG00000009868
Hagfish	MODERN SPECIES	1494															ENSEBUG00000015113	acaa1 (ENSEBUG00000009048) ##22	TACO1 (ENSEBUG00000015081)	cyp27a3 (ENSEBUG00000002885)	cnot9 (ENSEBUG00000000551)	ENSEBUG00000014820	mettl5 (ENSEBUG00000009662)	ENSEBUG00000008276	higd1a (ENSEBUG00000007368)	ENSEBUG00000002870	ENSEBUG00000016810
Gnathostomata	ANCESTRAL SPECIES	1337																ENSGT01030000234626.C ##22	ENSGT00390000006098
Elephant shark	MODERN SPECIES	2191																acaa1 (ENSCMIG00000001398) ##22	ENSCMIG00000001412
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b	ENSGT00940000153759.a.a
Sarcopterygii	ANCESTRAL SPECIES		ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b	ENSGT00940000153759.a.a
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926
Mammalia	ANCESTRAL SPECIES	93	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362
Theria	ANCESTRAL SPECIES	60	ENSGT00940000160677	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362
Eutheria	ANCESTRAL SPECIES	5	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263710
Atlantogenata	ANCESTRAL SPECIES	58	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173	ENSGT01100000266249
Afrotheria	ANCESTRAL SPECIES	70	ENSGT00550000075117	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173	ENSGT00940000155574.C	ENSGT00940000156148
Tenrec	MODERN SPECIES	24																ACAA1 (ENSETEG00000000006) ##22	DLEC1 (ENSETEG00000000005)
Afrotheria_a	ANCESTRAL SPECIES	67	ENSGT00550000075117	ENSGT01020000230359.B	ENSGT01020000230359.A	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173	ENSGT00940000155574.C	ENSGT00940000156148.k
Elephant	MODERN SPECIES	348	ENSLAFG00000026074	CCR8 (ENSLAFG00000006343)	CX3CR1 (ENSLAFG00000004804)	CSRNP1 (ENSLAFG00000017990)	ENSLAFG00000017984	GORASP1 (ENSLAFG00000031872)	WDR48 (ENSLAFG00000014800)	SCN10A (ENSLAFG00000003408)	EXOG (ENSLAFG00000018139)	ACVR2B (ENSLAFG00000001488)	XYLB (ENSLAFG00000008743)	SLC22A14 (ENSLAFG00000012847)	SLC22A13 (ENSLAFG00000001883)	ENSLAFG00000017679	MYD88 (ENSLAFG00000026321)	ACAA1 (ENSLAFG00000000002) ##22	ENSLAFG00000000001	PLCD1 (ENSLAFG00000018407)	VILL (ENSLAFG00000018403)	CTDSPL (ENSLAFG00000006997)	ENSLAFG00000026278	ENSLAFG00000024095	ENSLAFG00000001169	GOLGA4 (ENSLAFG00000001167)	LRRFIP2 (ENSLAFG00000016834)	MLH1 (ENSLAFG00000021468)	EPM2AIP1 (ENSLAFG00000030494)	DCLK3 (ENSLAFG00000026255)	STAC (ENSLAFG00000014326)	ARPP21 (ENSLAFG00000005797)	ENSLAFG00000001141
Hyrax	MODERN SPECIES	7644														OXSR1 (ENSPCAG00000014147)	MYD88 (ENSPCAG00000014114)	ACAA1 (ENSPCAG00000014048) ##22	DLEC1 (ENSPCAG00000013818)
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Eulipotyphla	ANCESTRAL SPECIES	610															ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098
Common shrew	MODERN SPECIES	3157															MYD88 (ENSSARG00000006266)	ENSSARG00000006217 ##22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	224																ENSEEUG00000007489 ##22	ENSEEUG00000007184
Hedgehog	MODERN SPECIES	13689																ENSEEUG00000006087 ##22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Carnivora	ANCESTRAL SPECIES	10	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173
Caniformia	ANCESTRAL SPECIES		ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173
Canidae	ANCESTRAL SPECIES	24	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710	ENSGT00390000001827
Canis_lupus	ANCESTRAL SPECIES	27	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00940000168257	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677.a	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263710
Dog	MODERN SPECIES	15	CSRNP1 (ENSCAFG00845030607)	TTC21A (ENSCAFG00845030584)	GORASP1 (ENSCAFG00845030523)	WDR48 (ENSCAFG00845030481)	SCN11A (ENSCAFG00845030314)	SCN10A (ENSCAFG00845030217)	SCN5A (ENSCAFG00845030126)	ENSCAFG00845030066	ACVR2B (ENSCAFG00845030040)	XYLB (ENSCAFG00845030016)	SLC22A14 (ENSCAFG00845029969)	SLC22A13 (ENSCAFG00845029932)	ENSCAFG00845029923	OXSR1 (ENSCAFG00845029861)	MYD88 (ENSCAFG00845029799)	ACAA1 (ENSCAFG00845029630) ##22	DLEC1 (ENSCAFG00845029482)	PLCD1 (ENSCAFG00845029321)	VILL (ENSCAFG00845029216)	ITGA9 (ENSCAFG00845028890)	ENSCAFG00845028805	GOLGA4 (ENSCAFG00845028361)	LRRFIP2 (ENSCAFG00845027518)	MLH1 (ENSCAFG00845027002)	EPM2AIP1 (ENSCAFG00845026884)	TRANK1 (ENSCAFG00845026194)	STAC (ENSCAFG00845025749)	ARPP21 (ENSCAFG00845025149)	ENSCAFG00845024788	CNOT10 (ENSCAFG00845023808)	TRIM71 (ENSCAFG00845023600)
Dingo	MODERN SPECIES	326	TTC21A (ENSCAFG00020025549)	ENSCAFG00020025554	WDR48 (ENSCAFG00020025556)	SCN11A (ENSCAFG00020025559)	SCN10A (ENSCAFG00020025566)	SCN5A (ENSCAFG00020025607)	ENSCAFG00020025811	ENSCAFG00020025813	ACVR2B (ENSCAFG00020025816)	XYLB (ENSCAFG00020000110)	SLC22A14 (ENSCAFG00020000640)	SLC22A13 (ENSCAFG00020000692)	OXSR1 (ENSCAFG00020000717)	ENSCAFG00020000742	MYD88 (ENSCAFG00020000751)	ACAA1 (ENSCAFG00020000766) ##22	DLEC1 (ENSCAFG00020000775)	PLCD1 (ENSCAFG00020000920)	VILL (ENSCAFG00020000940)	CTDSPL (ENSCAFG00020000964)	ITGA9 (ENSCAFG00020001019)	ENSCAFG00020001298	ENSCAFG00020001354	LRRFIP2 (ENSCAFG00020001365)	MLH1 (ENSCAFG00020001378)	EPM2AIP1 (ENSCAFG00020001382)	TRANK1 (ENSCAFG00020001387)	DCLK3 (ENSCAFG00020001505)	STAC (ENSCAFG00020001553)	ARPP21 (ENSCAFG00020001655)	ENSCAFG00020001731
Red fox	MODERN SPECIES	34	GORASP1 (ENSVVUG00000005825)	WDR48 (ENSVVUG00000005829)	SCN11A (ENSVVUG00000005852)	SCN10A (ENSVVUG00000005872)	SCN5A (ENSVVUG00000005938)	ENSVVUG00000005949	ENSVVUG00000005954	EXOG (ENSVVUG00000005960)	ACVR2B (ENSVVUG00000005974)	XYLB (ENSVVUG00000005982)	SLC22A14 (ENSVVUG00000006047)	SLC22A13 (ENSVVUG00000006082)	OXSR1 (ENSVVUG00000006140)	ENSVVUG00000006152	MYD88 (ENSVVUG00000006159)	ACAA1 (ENSVVUG00000006171) ##22	DLEC1 (ENSVVUG00000006194)	PLCD1 (ENSVVUG00000006298)	VILL (ENSVVUG00000006336)	CTDSPL (ENSVVUG00000006499)	ITGA9 (ENSVVUG00000006540)	ENSVVUG00000006560	GOLGA4 (ENSVVUG00000006576)	ENSVVUG00000006668	LRRFIP2 (ENSVVUG00000006679)	MLH1 (ENSVVUG00000006761)	EPM2AIP1 (ENSVVUG00000007774)	TRANK1 (ENSVVUG00000007788)	ENSVVUG00000007871
Caniformia_b	ANCESTRAL SPECIES		ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00940000170470	ENSGT00950000183092.b.b	ENSGT00940000160796
Ursidae	ANCESTRAL SPECIES	1	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00940000170470	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173
Ursus	ANCESTRAL SPECIES	56	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00940000170470	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173
American black bear	MODERN SPECIES	180				SCN10A (ENSUAMG00000006396)	ENSUAMG00000006392	SCN5A (ENSUAMG00000006270)	EXOG (ENSUAMG00000006239)	ACVR2B (ENSUAMG00000006231)	XYLB (ENSUAMG00000005952)	SLC22A14 (ENSUAMG00000005935)	SLC22A13 (ENSUAMG00000005932)	OXSR1 (ENSUAMG00000005328)	ENSUAMG00000005313	MYD88 (ENSUAMG00000005311)	ENSUAMG00000005310	ACAA1 (ENSUAMG00000005188) ##22	DLEC1 (ENSUAMG00000005158)	PLCD1 (ENSUAMG00000005144)	VILL (ENSUAMG00000005135)	CTDSPL (ENSUAMG00000005128)
Polar bear	MODERN SPECIES	112	XIRP1 (ENSUMAG00000004681)	CSRNP1 (ENSUMAG00000004684)	TTC21A (ENSUMAG00000004706)	GORASP1 (ENSUMAG00000004816)	WDR48 (ENSUMAG00000004825)	SCN11A (ENSUMAG00000004844)	SCN10A (ENSUMAG00000004889)	SCN5A (ENSUMAG00000004974)	EXOG (ENSUMAG00000005378)	ACVR2B (ENSUMAG00000005381)	XYLB (ENSUMAG00000005401)	SLC22A14 (ENSUMAG00000005633)	SLC22A13 (ENSUMAG00000005645)	OXSR1 (ENSUMAG00000005657)	MYD88 (ENSUMAG00000005662)	ACAA1 (ENSUMAG00000005665) ##22	DLEC1 (ENSUMAG00000005673)	PLCD1 (ENSUMAG00000005753)	VILL (ENSUMAG00000006079)	CTDSPL (ENSUMAG00000006094)	ITGA9 (ENSUMAG00000006129)	GOLGA4 (ENSUMAG00000006181)	LRRFIP2 (ENSUMAG00000006338)	MLH1 (ENSUMAG00000006371)	EPM2AIP1 (ENSUMAG00000006407)	TRANK1 (ENSUMAG00000006416)	DCLK3 (ENSUMAG00000006475)	ENSUMAG00000006479	STAC (ENSUMAG00000006496)	ARPP21 (ENSUMAG00000006519)	ENSUMAG00000006668
Giant Panda	MODERN SPECIES	16	XIRP1 (ENSAMEG00000019975)	CSRNP1 (ENSAMEG00000001247)	TTC21A (ENSAMEG00000001196)	GORASP1 (ENSAMEG00000001177)	WDR48 (ENSAMEG00000001138)	SCN11A (ENSAMEG00000004951)	SCN10A (ENSAMEG00000017646)	SCN5A (ENSAMEG00000017650)	EXOG (ENSAMEG00000017693)	ACVR2B (ENSAMEG00000017697)	XYLB (ENSAMEG00000017714)	SLC22A14 (ENSAMEG00000017732)	SLC22A13 (ENSAMEG00000017736)	OXSR1 (ENSAMEG00000017753)	MYD88 (ENSAMEG00000017769)	ACAA1 (ENSAMEG00000017775) ##22	DLEC1 (ENSAMEG00000017793)	PLCD1 (ENSAMEG00000017808)	VILL (ENSAMEG00000017826)	CTDSPL (ENSAMEG00000017860)	ITGA9 (ENSAMEG00000017867)	GOLGA4 (ENSAMEG00000017880)	LRRFIP2 (ENSAMEG00000017893)	MLH1 (ENSAMEG00000017905)	EPM2AIP1 (ENSAMEG00000019899)	TRANK1 (ENSAMEG00000017925)	DCLK3 (ENSAMEG00000017930)	STAC (ENSAMEG00000017932)	ENSAMEG00000017937	ENSAMEG00000002537	ENSAMEG00000020235
Mustelinae	ANCESTRAL SPECIES	121	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00940000170470	ENSGT00950000183092.b.b	ENSGT00940000160796
American mink	MODERN SPECIES	338													ENSNVIG00000024920	ENSNVIG00000024921	MYD88 (ENSNVIG00000024922)	ACAA1 (ENSNVIG00000024923) ##22	DLEC1 (ENSNVIG00000024925)	PLCD1 (ENSNVIG00000024930)	ENSNVIG00000024932	CTDSPL (ENSNVIG00000024933)	ENSNVIG00000024935	ITGA9 (ENSNVIG00000024937)	ENSNVIG00000024942	GOLGA4 (ENSNVIG00000024943)	LRRFIP2 (ENSNVIG00000024946)	MLH1 (ENSNVIG00000024948)	EPMIP (ENSNVIG00000024950)	TRANK1 (ENSNVIG00000024951)	DCLK3 (ENSNVIG00000024954)	ENSNVIG00000024955	STAC (ENSNVIG00000024956)
Ferret	MODERN SPECIES	233	GORASP1 (ENSMPUG00000002496)	WDR48 (ENSMPUG00000002501)	ENSMPUG00000019021	ENSMPUG00000002507	ENSMPUG00000002510	ENSMPUG00000002516	SCN10A (ENSMPUG00000002519)	SCN5A (ENSMPUG00000002582)	EXOG (ENSMPUG00000002594)	ACVR2B (ENSMPUG00000002620)	XYLB (ENSMPUG00000002626)	SLC22A14 (ENSMPUG00000002632)	SLC22A13 (ENSMPUG00000002651)	OXSR1 (ENSMPUG00000002669)	MYD88 (ENSMPUG00000002755)	ACAA1 (ENSMPUG00000002761) ##22	ENSMPUG00000002853	ENSMPUG00000002858	PLCD1 (ENSMPUG00000002864)	CTDSPL (ENSMPUG00000002870)	ITGA9 (ENSMPUG00000002890)	GOLGA4 (ENSMPUG00000002897)	LRRFIP2 (ENSMPUG00000002904)	MLH1 (ENSMPUG00000002917)	EPM2AIP1 (ENSMPUG00000019023)	TRANK1 (ENSMPUG00000002926)	DCLK3 (ENSMPUG00000002934)	ENSMPUG00000002941	STAC (ENSMPUG00000002965)	ARPP21 (ENSMPUG00000002971)	RIN1 (ENSMPUG00000002981)
Felidae	ANCESTRAL SPECIES	9	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00390000001827
Panthera	ANCESTRAL SPECIES	12	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00390000001827
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00390000001827
leopard	MODERN SPECIES	75	XIRP1 (ENSPPRG00000007282)	CSRNP1 (ENSPPRG00000009370)	TTC21A (ENSPPRG00000012924)	GORASP1 (ENSPPRG00000016191)	WDR48 (ENSPPRG00000017067)	SCN11A (ENSPPRG00000023579)	SCN10A (ENSPPRG00000023044)	SCN5A (ENSPPRG00000013452)	EXOG (ENSPPRG00000015275)	ACVR2B (ENSPPRG00000016504)	XYLB (ENSPPRG00000019938)	SLC22A14 (ENSPPRG00000024603)	SLC22A13 (ENSPPRG00000024514)	OXSR1 (ENSPPRG00000024257)	MYD88 (ENSPPRG00000023634)	ACAA1 (ENSPPRG00000000468) ##22	DLEC1 (ENSPPRG00000003062)	PLCD1 (ENSPPRG00000004192)	VILL (ENSPPRG00000004951)	CTDSPL (ENSPPRG00000005559)	ITGA9 (ENSPPRG00000006908)	GOLGA4 (ENSPPRG00000008769)	LRRFIP2 (ENSPPRG00000012905)	MLH1 (ENSPPRG00000019234)	EPM2AIP1 (ENSPPRG00000015660)	TRANK1 (ENSPPRG00000000968)	DCLK3 (ENSPPRG00000001743)	STAC (ENSPPRG00000002159)	ARPP21 (ENSPPRG00000006681)	ENSPPRG00000007728	CNOT10 (ENSPPRG00000009955)
lion	MODERN SPECIES	9	TTC21A (ENSPLOG00000013190)	GORASP1 (ENSPLOG00000012960)	WDR48 (ENSPLOG00000012879)	SCN11A (ENSPLOG00000012788)	SCN10A (ENSPLOG00000011876)	ENSPLOG00000011727	SCN5A (ENSPLOG00000010263)	EXOG (ENSPLOG00000009981)	ACVR2B (ENSPLOG00000009922)	XYLB (ENSPLOG00000009825)	SLC22A14 (ENSPLOG00000009708)	SLC22A13 (ENSPLOG00000009632)	OXSR1 (ENSPLOG00000009457)	MYD88 (ENSPLOG00000009117)	ENSPLOG00000008997	ACAA1 (ENSPLOG00000008872) ##22	DLEC1 (ENSPLOG00000008628)	PLCD1 (ENSPLOG00000008505)	VILL (ENSPLOG00000008368)	CTDSPL (ENSPLOG00000008304)	ITGA9 (ENSPLOG00000008069)	GOLGA4 (ENSPLOG00000007848)	LRRFIP2 (ENSPLOG00000007657)	MLH1 (ENSPLOG00000007513)	EPM2AIP1 (ENSPLOG00000007490)	TRANK1 (ENSPLOG00000007377)	DCLK3 (ENSPLOG00000007340)	ENSPLOG00000007312	STAC (ENSPLOG00000007219)	ARPP21 (ENSPLOG00000007123)	ENSPLOG00000006909
Tiger	MODERN SPECIES	154	CX3CR1 (ENSPTIG00000000914)	CSRNP1 (ENSPTIG00000009070)	TTC21A (ENSPTIG00000012101)	GORASP1 (ENSPTIG00000016523)	WDR48 (ENSPTIG00000018512)	SCN11A (ENSPTIG00000020843)	SCN10A (ENSPTIG00000017282)	SCN5A (ENSPTIG00000021528)	EXOG (ENSPTIG00000020710)	ACVR2B (ENSPTIG00000021345)	XYLB (ENSPTIG00000005521)	SLC22A14 (ENSPTIG00000007241)	SLC22A13 (ENSPTIG00000009287)	OXSR1 (ENSPTIG00000009682)	MYD88 (ENSPTIG00000011974)	ACAA1 (ENSPTIG00000013435) ##22	DLEC1 (ENSPTIG00000017085)	PLCD1 (ENSPTIG00000005337)	ENSPTIG00000009941	CTDSPL (ENSPTIG00000013903)	ITGA9 (ENSPTIG00000015898)	GOLGA4 (ENSPTIG00000020263)	LRRFIP2 (ENSPTIG00000007303)	MLH1 (ENSPTIG00000009444)	EPM2AIP1 (ENSPTIG00000004713)	TRANK1 (ENSPTIG00000012499)	ENSPTIG00000014091	STAC (ENSPTIG00000014750)
Cat	MODERN SPECIES	240	CSRNP1 (ENSFCAG00000022981)	TTC21A (ENSFCAG00000013530)	GORASP1 (ENSFCAG00000022655)	WDR48 (ENSFCAG00000025123)	SCN11A (ENSFCAG00000000236)	SCN10A (ENSFCAG00000003166)	ENSFCAG00000039897	SCN5A (ENSFCAG00000003161)	EXOG (ENSFCAG00000003159)	ACVR2B (ENSFCAG00000003157)	XYLB (ENSFCAG00000008493)	SLC22A14 (ENSFCAG00000012402)	SLC22A13 (ENSFCAG00000012398)	OXSR1 (ENSFCAG00000012392)	MYD88 (ENSFCAG00000034951)	ACAA1 (ENSFCAG00000012872) ##22	DLEC1 (ENSFCAG00000012866)	PLCD1 (ENSFCAG00000002286)	VILL (ENSFCAG00000002285)	CTDSPL (ENSFCAG00000002282)	ITGA9 (ENSFCAG00000002281)	GOLGA4 (ENSFCAG00000002280)	LRRFIP2 (ENSFCAG00000001374)	MLH1 (ENSFCAG00000001371)	EPM2AIP1 (ENSFCAG00000030150)	TRANK1 (ENSFCAG00000004817)	DCLK3 (ENSFCAG00000022392)	STAC (ENSFCAG00000005011)	ARPP21 (ENSFCAG00000013391)	PDCD6IP (ENSFCAG00000022852)	CNOT10 (ENSFCAG00000002916)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT01100000263628
Equus	ANCESTRAL SPECIES	5	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083	ENSGT00940000155574.C
Horse	MODERN SPECIES	7	CSRNP1 (ENSECAG00000000763)	GORASP1 (ENSECAG00000049721)	WDR48 (ENSECAG00000018492)	GORASP1 (ENSECAG00000016287)	SCN10A (ENSECAG00000017790)	SCN5A (ENSECAG00000000813)	EXOG (ENSECAG00000015682)	ACVR2B (ENSECAG00000019616)	XYLB (ENSECAG00000023194)	ENSECAG00000048403	SLC22A14 (ENSECAG00000012363)	SLC22A13 (ENSECAG00000014100)	OXSR1 (ENSECAG00000019157)	ENSECAG00000046064	MYD88 (ENSECAG00000001774)	ACAA1 (ENSECAG00000008613) ##22	DLEC1 (ENSECAG00000019602)	PLCD1 (ENSECAG00000023703)	VILL (ENSECAG00000012325)	ITGA9 (ENSECAG00000007848)	GOLGA4 (ENSECAG00000013495)	ENSECAG00000055774	LRRFIP2 (ENSECAG00000021270)	MLH1 (ENSECAG00000000690)	EPM2AIP1 (ENSECAG00000004874)	TRANK1 (ENSECAG00000018264)	ENSECAG00000020152	DCLK3 (ENSECAG00000020294)	STAC (ENSECAG00000021165)	ARPP21 (ENSECAG00000022872)	PDCD6IP (ENSECAG00000004691)
Donkey	MODERN SPECIES	13	ENSEASG00005025143	CSRNP1 (ENSEASG00005038354)	TTC21A (ENSEASG00005007589)	ENSEASG00005007585	WDR48 (ENSEASG00005007582)	SCN11A (ENSEASG00005007578)	SCN10A (ENSEASG00005007571)	SCN5A (ENSEASG00005007552)	EXOG (ENSEASG00005024860)	ACVR2B (ENSEASG00005007540)	XYLB (ENSEASG00005007537)	SLC22A14 (ENSEASG00005007534)	SLC22A13 (ENSEASG00005007532)	OXSR1 (ENSEASG00005007524)	MYD88 (ENSEASG00005007511)	ACAA1 (ENSEASG00005007506) ##22	DLEC1 (ENSEASG00005007489)	PLCD1 (ENSEASG00005007479)	VILL (ENSEASG00005007472)	CTDSPL (ENSEASG00005007457)	ITGA9 (ENSEASG00005007449)	GOLGA4 (ENSEASG00005007416)	LRRFIP2 (ENSEASG00005007395)	MLH1 (ENSEASG00005007389)	EPM2AIP1 (ENSEASG00005007387)	TRANK1 (ENSEASG00005007374)	DCLK3 (ENSEASG00005007362)	STAC (ENSEASG00005007347)	ARPP21 (ENSEASG00005007331)	PDCD6IP (ENSEASG00005007194)	ENSEASG00005024723
Chiroptera	ANCESTRAL SPECIES	19	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Greater horseshoe bat	MODERN SPECIES	8	CSRNP1 (ENSRFEG00010017514)	TTC21A (ENSRFEG00010017551)	ENSRFEG00010017628	WDR48 (ENSRFEG00010017783)	SCN11A (ENSRFEG00010017881)	SCN10A (ENSRFEG00010018579)	ENSRFEG00010019010	SCN5A (ENSRFEG00010019149)	ENSRFEG00010020438	EXOG (ENSRFEG00010020468)	ACVR2B (ENSRFEG00010020513)	XYLB (ENSRFEG00010020542)	SLC22A13 (ENSRFEG00010020685)	ENSRFEG00010020751	MYD88 (ENSRFEG00010020845)	ACAA1 (ENSRFEG00010020986) ##22	DLEC1 (ENSRFEG00010021046)	PLCD1 (ENSRFEG00010021144)	VILL (ENSRFEG00010021183)	CTDSPL (ENSRFEG00010021213)	ITGA9 (ENSRFEG00010021275)	GOLGA4 (ENSRFEG00010021350)	LRRFIP2 (ENSRFEG00010021479)	MLH1 (ENSRFEG00010021555)	EPM2AIP1 (ENSRFEG00010021591)	TRANK1 (ENSRFEG00010021598)	DCLK3 (ENSRFEG00010021623)	STAC (ENSRFEG00010021640)	ENSRFEG00010021648	ARPP21 (ENSRFEG00010021667)	ENSRFEG00010021696
Microbat	MODERN SPECIES	1220	XIRP1 (ENSMLUG00000005639)	CSRNP1 (ENSMLUG00000005636)	TTC21A (ENSMLUG00000005619)	GORASP1 (ENSMLUG00000005614)	WDR48 (ENSMLUG00000005608)	SCN11A (ENSMLUG00000005563)	SCN10A (ENSMLUG00000002821)	ENSMLUG00000002798	EXOG (ENSMLUG00000002789)	ACVR2B (ENSMLUG00000022627)	XYLB (ENSMLUG00000023159)	SLC22A14 (ENSMLUG00000013018)	SLC22A13 (ENSMLUG00000011773)	OXSR1 (ENSMLUG00000011748)	MYD88 (ENSMLUG00000011739)	ACAA1 (ENSMLUG00000011713) ##22	DLEC1 (ENSMLUG00000011654)
Megabat	MODERN SPECIES	1099														ENSPVAG00000013641	MYD88 (ENSPVAG00000013639)	ACAA1 (ENSPVAG00000013636) ##22	DLEC1 (ENSPVAG00000013631)	PLCD1 (ENSPVAG00000013630)	VILL (ENSPVAG00000013624)	CTDSPL (ENSPVAG00000013623)	ITGA9 (ENSPVAG00000013621)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Suina	ANCESTRAL SPECIES	1	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Pig	MODERN SPECIES	4	CX3CR1 (ENSSSCG00000024024)	CSRNP1 (ENSSSCG00000011264)	TTC21A (ENSSSCG00000011263)	GORASP1 (ENSSSCG00000034916)	WDR48 (ENSSSCG00000011261)	SCN11A (ENSSSCG00000029419)	SCN10A (ENSSSCG00000011260)	SCN5A (ENSSSCG00000011259)	EXOG (ENSSSCG00000011258)	ACVR2B (ENSSSCG00000011257)	XYLB (ENSSSCG00000011254)	SLC22A14 (ENSSSCG00000011255)	SLC22A13 (ENSSSCG00000011256)	ENSSSCG00000011253	MYD88 (ENSSSCG00000011251)	ACAA1 (ENSSSCG00000011250) ##22	DLEC1 (ENSSSCG00000011249)	PLCD1 (ENSSSCG00000027550)	VILL (ENSSSCG00000011246)	CTDSPL (ENSSSCG00000028740)	ENSSSCG00000052901	ITGA9 (ENSSSCG00000011245)	ENSSSCG00000011243	ENSSSCG00000062556	ENSSSCG00000037246	DCLK3 (ENSSSCG00000011241)	ENSSSCG00000054588	TRANK1 (ENSSSCG00000011239)	EPM2AIP1 (ENSSSCG00000030247)	ENSSSCG00000025502	MLH1 (ENSSSCG00000024222)
Chacoan peccary	MODERN SPECIES	950	CSRNP1 (ENSCWAG00000021893)	TTC21A (ENSCWAG00000021887)	GORASP1 (ENSCWAG00000021874)	WDR48 (ENSCWAG00000021866)	SCN11A (ENSCWAG00000021830)	SCN10A (ENSCWAG00000021776)	ENSCWAG00000021757	SCN5A (ENSCWAG00000021403)	EXOG (ENSCWAG00000021295)	ACVR2B (ENSCWAG00000021280)	XYLB (ENSCWAG00000021267)	SLC22A14 (ENSCWAG00000021252)	SLC22A13 (ENSCWAG00000021216)	OXSR1 (ENSCWAG00000021186)	MYD88 (ENSCWAG00000021127)	ACAA1 (ENSCWAG00000021076) ##22	DLEC1 (ENSCWAG00000021032)	PLCD1 (ENSCWAG00000020985)	VILL (ENSCWAG00000020946)	CTDSPL (ENSCWAG00000020887)	ITGA9 (ENSCWAG00000020817)	GOLGA4 (ENSCWAG00000020789)	DCLK3 (ENSCWAG00000020770)	TRANK1 (ENSCWAG00000020657)	EPM2AIP1 (ENSCWAG00000020633)	MLH1 (ENSCWAG00000020596)	LRRFIP2 (ENSCWAG00000020544)	STAC (ENSCWAG00000020504)	ARPP21 (ENSCWAG00000020389)	ENSCWAG00000020346	CLASP2 (ENSCWAG00000020062)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Artiodactyla_b	ANCESTRAL SPECIES	28	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000163766	ENSGT00940000162801	ENSGT00940000162289	ENSGT00940000163095.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00940000164896	ENSGT00390000007084.c.b.bb	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000155389.p	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000163766	ENSGT00940000162801	ENSGT00940000162289	ENSGT00940000163095.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00940000164896	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000155389.p	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000163766	ENSGT00940000162801	ENSGT00940000162289	ENSGT00940000163095.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00940000164896	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000155389.p	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710
Dolphin	MODERN SPECIES	819															MYD88 (ENSTTRG00000005499)	ACAA1 (ENSTTRG00000005493) ##22	DLEC1 (ENSTTRG00000005459)	VILL (ENSTTRG00000005440)	CTDSPL (ENSTTRG00000005427)	ITGA9 (ENSTTRG00000005393)	GOLGA4 (ENSTTRG00000005348)
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000162801	ENSGT00940000162289	ENSGT00940000163095.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00940000164896	ENSGT00940000160677	ENSGT00390000007084.c.b.bb	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000157167.d	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000155389.p	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710
Vaquita	MODERN SPECIES	2	ENSPSNG00000017437	KIAA1143 (ENSPSNG00000017469)	KIF15 (ENSPSNG00000017536)	ENSPSNG00000017793	EXOG (ENSPSNG00000017865)	ENSPSNG00000017947	ACVR2B (ENSPSNG00000017985)	XYLB (ENSPSNG00000018030)	SLC22A14 (ENSPSNG00000018080)	ENSPSNG00000018184	OXSR1 (ENSPSNG00000018237)	ENSPSNG00000018318	ENSPSNG00000018351	ENSPSNG00000018393	MYD88 (ENSPSNG00000018434)	ACAA1 (ENSPSNG00000018679) ##22	DLEC1 (ENSPSNG00000018877)	PLCD1 (ENSPSNG00000019020)	VILL (ENSPSNG00000019145)	CTDSPL (ENSPSNG00000019319)	ITGA9 (ENSPSNG00000019404)	GOLGA4 (ENSPSNG00000019775)	DCLK3 (ENSPSNG00000020008)	ENSPSNG00000020064	TRANK1 (ENSPSNG00000020164)	EPM2AIP1 (ENSPSNG00000020375)	MLH1 (ENSPSNG00000020426)	LRRFIP2 (ENSPSNG00000020625)	STAC (ENSPSNG00000020796)	ARPP21 (ENSPSNG00000020983)	ENSPSNG00000007756
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000162801	ENSGT00940000162289	ENSGT00940000163095.b	ENSGT00390000001296	ENSGT00940000156463	ENSGT00940000164896	ENSGT00940000160677	ENSGT00390000007084.c.b.bb	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000157167.d	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000155389.p	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000171382
Beluga whale	MODERN SPECIES	56	ENSDLEG00000011569	KIAA1143 (ENSDLEG00000011611)	KIF15 (ENSDLEG00000011667)	ENSDLEG00000011978	ENSDLEG00000011993	EXOG (ENSDLEG00000012012)	ENSDLEG00000012034	ACVR2B (ENSDLEG00000012051)	XYLB (ENSDLEG00000012174)	SLC22A14 (ENSDLEG00000012958)	ENSDLEG00000012998	ENSDLEG00000013038	ENSDLEG00000013396	ENSDLEG00000013402	MYD88 (ENSDLEG00000013408)	ACAA1 (ENSDLEG00000013415) ##22	DLEC1 (ENSDLEG00000013438)	PLCD1 (ENSDLEG00000013512)	VILL (ENSDLEG00000013632)	CTDSPL (ENSDLEG00000014030)	ITGA9 (ENSDLEG00000014064)	GOLGA4 (ENSDLEG00000008344)	DCLK3 (ENSDLEG00000008606)	TRANK1 (ENSDLEG00000008707)	EPM2AIP1 (ENSDLEG00000009081)	MLH1 (ENSDLEG00000009212)	LRRFIP2 (ENSDLEG00000010265)	STAC (ENSDLEG00000010955)	ARPP21 (ENSDLEG00000011001)	PDCD6IP (ENSDLEG00000011121)	CLASP2 (ENSDLEG00000011627)
Narwhal	MODERN SPECIES	310	ZNF35 (ENSMMNG00015015876)	ENSMMNG00015015853	ENSMMNG00015015838	KIAA1143 (ENSMMNG00015015813)	ENSMMNG00015015761	KIF15 (ENSMMNG00015018553)	ENSMMNG00015018480	EXOG (ENSMMNG00015018442)	ACVR2B (ENSMMNG00015018397)	XYLB (ENSMMNG00015018362)	SLC22A14 (ENSMMNG00015018318)	ENSMMNG00015018294	ENSMMNG00015018280	OXSR1 (ENSMMNG00015018188)	MYD88 (ENSMMNG00015018008)	ACAA1 (ENSMMNG00015017766) ##22	DLEC1 (ENSMMNG00015017564)	PLCD1 (ENSMMNG00015017400)	VILL (ENSMMNG00015017280)	CTDSPL (ENSMMNG00015017177)	ITGA9 (ENSMMNG00015017083)	GOLGA4 (ENSMMNG00015016938)	DCLK3 (ENSMMNG00015016864)	ENSMMNG00015016829	TRANK1 (ENSMMNG00015016747)	EPM2AIP1 (ENSMMNG00015016713)	MLH1 (ENSMMNG00015016620)	LRRFIP2 (ENSMMNG00015016562)	STAC (ENSMMNG00015016495)	ARPP21 (ENSMMNG00015016400)	ENSMMNG00015016299
Sperm whale	MODERN SPECIES	9	ZNF35 (ENSPCTG00005021016)	ZNF502 (ENSPCTG00005021037)	ENSPCTG00005021060	KIAA1143 (ENSPCTG00005021068)	KIF15 (ENSPCTG00005021099)	ENSPCTG00005021201	ENSPCTG00005021215	EXOG (ENSPCTG00005021243)	ACVR2B (ENSPCTG00005021275)	XYLB (ENSPCTG00005021326)	ENSPCTG00005021392	SLC22A14 (ENSPCTG00005021413)	ENSPCTG00005021475	OXSR1 (ENSPCTG00005021495)	ENSPCTG00005021515	ACAA1 (ENSPCTG00005004314) ##22	DLEC1 (ENSPCTG00005004369)	PLCD1 (ENSPCTG00005004424)	VILL (ENSPCTG00005004487)	ENSPCTG00005004550	ITGA9 (ENSPCTG00005004587)	GOLGA4 (ENSPCTG00005004721)	DCLK3 (ENSPCTG00005005021)	TRANK1 (ENSPCTG00005005161)	EPM2AIP1 (ENSPCTG00005005689)	MLH1 (ENSPCTG00005005703)	LRRFIP2 (ENSPCTG00005005826)	STAC (ENSPCTG00005006229)	ARPP21 (ENSPCTG00005006362)	ENSPCTG00005006439	PDCD6IP (ENSPCTG00005006462)
Blue whale	MODERN SPECIES	2	ENSBMSG00010022552	ENSBMSG00010022551	KIF15 (ENSBMSG00010022550)	ENSBMSG00010022549	ENSBMSG00010022548	ENSBMSG00010022547	EXOG (ENSBMSG00010022546)	ACVR2B (ENSBMSG00010022545)	XYLB (ENSBMSG00010022544)	SLC22A14 (ENSBMSG00010022543)	ENSBMSG00010022542	ENSBMSG00010022541	ENSBMSG00010022540	OXSR1 (ENSBMSG00010022539)	MYD88 (ENSBMSG00010022538)	ACAA1 (ENSBMSG00010022537) ##22	DLEC1 (ENSBMSG00010022536)	PLCD1 (ENSBMSG00010022535)	VILL (ENSBMSG00010022533)	ITGA9 (ENSBMSG00010022532)	ENSBMSG00010022531	ENSBMSG00010022530	ENSBMSG00010022529	DCLK3 (ENSBMSG00010022528)	ENSBMSG00010022527	TRANK1 (ENSBMSG00010022526)	EPM2AIP1 (ENSBMSG00010022525)	MLH1 (ENSBMSG00010022524)	LRRFIP2 (ENSBMSG00010022523)	STAC (ENSBMSG00010022522)	ARPP21 (ENSBMSG00010022519)
Pecora	ANCESTRAL SPECIES	17	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Percora_a	ANCESTRAL SPECIES	19	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628	ENSGT00940000155574.C
Bovidae	ANCESTRAL SPECIES	19	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00960000189872	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628
Bovinae	ANCESTRAL SPECIES	16	ENSGT00530000063779.B.f	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00960000189872.a	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628
Bos	ANCESTRAL SPECIES	16	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.a.b.a.b	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00960000189872.a	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025
Bos_b	ANCESTRAL SPECIES	17	ENSGT00530000063779.B.f	ENSGT00950000183072.a	ENSGT00390000005979.a.e	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.a.b.a.b	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00960000189872.a	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025
Cow	MODERN SPECIES	14	TTC21A (ENSBTAG00000010477)	ENSBTAG00000050991	GORASP1 (ENSBTAG00000047135)	WDR48 (ENSBTAG00000003745)	SCN11A (ENSBTAG00000017174)	ENSBTAG00000054304	SCN10A (ENSBTAG00000046911)	SCN5A (ENSBTAG00000009155)	EXOG (ENSBTAG00000019305)	ACVR2B (ENSBTAG00000018105)	XYLB (ENSBTAG00000011278)	SLC22A14 (ENSBTAG00000008463)	OXSR1 (ENSBTAG00000014927)	MYD88 (ENSBTAG00000000563)	ENSBTAG00000054286	ACAA1 (ENSBTAG00000018283) ##22	ENSBTAG00000048947	DLEC1 (ENSBTAG00000008567)	PLCD1 (ENSBTAG00000037726)	VILL (ENSBTAG00000012963)	CTDSPL (ENSBTAG00000053223)	ITGA9 (ENSBTAG00000016566)	GOLGA4 (ENSBTAG00000016563)	DCLK3 (ENSBTAG00000039727)	TRANK1 (ENSBTAG00000021452)	EPM2AIP1 (ENSBTAG00000022733)	MLH1 (ENSBTAG00000016758)	LRRFIP2 (ENSBTAG00000016760)	STAC (ENSBTAG00000006735)	ARPP21 (ENSBTAG00000007732)	ENSBTAG00000051119
Hybrid Bos Indicus	MODERN SPECIES	14	TTC21A (ENSBIXG00005023872)	GORASP1 (ENSBIXG00005004080)	WDR48 (ENSBIXG00005007700)	ENSBIXG00005023676	SCN11A (ENSBIXG00005023635)	SCN10A (ENSBIXG00005023600)	SCN5A (ENSBIXG00005023463)	ENSBIXG00005023201	EXOG (ENSBIXG00005003960)	ENSBIXG00005003952	ACVR2B (ENSBIXG00005003949)	XYLB (ENSBIXG00005003935)	SLC22A14 (ENSBIXG00005023045)	OXSR1 (ENSBIXG00005022957)	MYD88 (ENSBIXG00005022869)	ACAA1 (ENSBIXG00005022771) ##22	DLEC1 (ENSBIXG00005003890)	ENSBIXG00005022587	PLCD1 (ENSBIXG00005022560)	VILL (ENSBIXG00005007732)	CTDSPL (ENSBIXG00005022263)	ENSBIXG00005022220	ITGA9 (ENSBIXG00005022194)	ENSBIXG00005022114	GOLGA4 (ENSBIXG00005003744)	DCLK3 (ENSBIXG00005003708)	TRANK1 (ENSBIXG00005021927)	EPM2AIP1 (ENSBIXG00005021436)	MLH1 (ENSBIXG00005021401)	LRRFIP2 (ENSBIXG00005021264)	STAC (ENSBIXG00005003549)
Bos_a	ANCESTRAL SPECIES	9	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.a.b.a.b	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Wild yak	MODERN SPECIES	1249	ENSBMUG00000017041	CSRNP1 (ENSBMUG00000017058)	TTC21A (ENSBMUG00000017191)	GORASP1 (ENSBMUG00000017243)	WDR48 (ENSBMUG00000017268)	SCN11A (ENSBMUG00000017359)	ENSBMUG00000017376	SCN10A (ENSBMUG00000017414)	SCN5A (ENSBMUG00000017639)	EXOG (ENSBMUG00000017667)	ACVR2B (ENSBMUG00000017693)	XYLB (ENSBMUG00000017848)	SLC22A14 (ENSBMUG00000018035)	OXSR1 (ENSBMUG00000018075)	MYD88 (ENSBMUG00000018136)	ACAA1 (ENSBMUG00000018199) ##22	DLEC1 (ENSBMUG00000018281)	ENSBMUG00000018311
Domestic yak	MODERN SPECIES	14	CX3CR1 (ENSBGRG00000007861)	CSRNP1 (ENSBGRG00000008132)	TTC21A (ENSBGRG00000008237)	GORASP1 (ENSBGRG00000009134)	WDR48 (ENSBGRG00000009347)	SCN11A (ENSBGRG00000009542)	SCN10A (ENSBGRG00000009854)	SCN5A (ENSBGRG00000010413)	ENSBGRG00000011105	ENSBGRG00000011202	ACVR2B (ENSBGRG00000011212)	XYLB (ENSBGRG00000011328)	ENSBGRG00000011442	OXSR1 (ENSBGRG00000011640)	MYD88 (ENSBGRG00000011964)	ACAA1 (ENSBGRG00000012620) ##22	DLEC1 (ENSBGRG00000013016)	PLCD1 (ENSBGRG00000013464)	VILL (ENSBGRG00000013769)	ENSBGRG00000014207	ITGA9 (ENSBGRG00000014471)	ENSBGRG00000014575	ENSBGRG00000014786	DCLK3 (ENSBGRG00000014862)	TRANK1 (ENSBGRG00000014964)	EPM2AIP1 (ENSBGRG00000015283)	MLH1 (ENSBGRG00000015448)	LRRFIP2 (ENSBGRG00000016218)	STAC (ENSBGRG00000017416)	ARPP21 (ENSBGRG00000017571)	ENSBGRG00000017977
American bison	MODERN SPECIES	2981	ENSBBBG00000021188	ENSBBBG00000021184	CSRNP1 (ENSBBBG00000021178)	TTC21A (ENSBBBG00000005665)	GORASP1 (ENSBBBG00000021030)	WDR48 (ENSBBBG00000020975)	SCN11A (ENSBBBG00000020919)	SCN10A (ENSBBBG00000020758)	SCN5A (ENSBBBG00000005566)	EXOG (ENSBBBG00000020249)	ACVR2B (ENSBBBG00000005045)	XYLB (ENSBBBG00000020237)	SLC22A14 (ENSBBBG00000008176)	OXSR1 (ENSBBBG00000020205)	MYD88 (ENSBBBG00000005444)	ACAA1 (ENSBBBG00000020085) ##22	DLEC1 (ENSBBBG00000020029)	ENSBBBG00000019986	PLCD1 (ENSBBBG00000019979)	VILL (ENSBBBG00000005122)	CTDSPL (ENSBBBG00000019925)	ITGA9 (ENSBBBG00000005380)	ENSBBBG00000019844	GOLGA4 (ENSBBBG00000019820)	DCLK3 (ENSBBBG00000005168)	TRANK1 (ENSBBBG00000019712)	EPM2AIP1 (ENSBBBG00000019649)	MLH1 (ENSBBBG00000019630)	LRRFIP2 (ENSBBBG00000019541)	STAC (ENSBBBG00000008362)	ARPP21 (ENSBBBG00000019342)
Caprinae	ANCESTRAL SPECIES	15	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00390000003022.h	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00960000189872	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000159476	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628
Goat	MODERN SPECIES	14	CSRNP1 (ENSCHIG00000021961)	TTC21A (ENSCHIG00000018055)	GORASP1 (ENSCHIG00000013463)	WDR48 (ENSCHIG00000009086)	ENSCHIG00000024599	SCN11A (ENSCHIG00000021823)	SCN10A (ENSCHIG00000009678)	SCN5A (ENSCHIG00000015851)	EXOG (ENSCHIG00000013450)	ACVR2B (ENSCHIG00000013125)	XYLB (ENSCHIG00000024548)	SLC22A13 (ENSCHIG00000026295)	OXSR1 (ENSCHIG00000017239)	ENSCHIG00000008096	MYD88 (ENSCHIG00000017653)	ACAA1 (ENSCHIG00000010466) ##22	DLEC1 (ENSCHIG00000021261)	PLCD1 (ENSCHIG00000012504)	VILL (ENSCHIG00000021533)	CTDSPL (ENSCHIG00000015918)	ENSCHIG00000009750	ITGA9 (ENSCHIG00000021157)	GOLGA4 (ENSCHIG00000016192)	DCLK3 (ENSCHIG00000020580)	TRANK1 (ENSCHIG00000026535)	EPM2AIP1 (ENSCHIG00000006585)	MLH1 (ENSCHIG00000011953)	LRRFIP2 (ENSCHIG00000021299)	STAC (ENSCHIG00000025466)	ARPP21 (ENSCHIG00000014318)	PDCD6IP (ENSCHIG00000027185)
Rambouillet Sheep	MODERN SPECIES	10	ENSOARG00020017791	CSRNP1 (ENSOARG00020017752)	TTC21A (ENSOARG00020017528)	GORASP1 (ENSOARG00020017397)	WDR48 (ENSOARG00020017277)	ENSOARG00020017210	SCN11A (ENSOARG00020016401)	SCN10A (ENSOARG00020016009)	SCN5A (ENSOARG00020010796)	EXOG (ENSOARG00020010558)	ACVR2B (ENSOARG00020010379)	XYLB (ENSOARG00020010299)	SLC22A14 (ENSOARG00020010114)	OXSR1 (ENSOARG00020025952)	MYD88 (ENSOARG00020025914)	ACAA1 (ENSOARG00020025891) ##22	ENSOARG00020025885	DLEC1 (ENSOARG00020025873)	PLCD1 (ENSOARG00020025854)	VILL (ENSOARG00020025822)	CTDSPL (ENSOARG00020025807)	ITGA9 (ENSOARG00020025800)	GOLGA4 (ENSOARG00020025783)	DCLK3 (ENSOARG00020025768)	TRANK1 (ENSOARG00020025761)	EPM2AIP1 (ENSOARG00020025757)	ENSOARG00020025756	MLH1 (ENSOARG00020025753)	LRRFIP2 (ENSOARG00020025704)	STAC (ENSOARG00020025681)	ARPP21 (ENSOARG00020025663)
Siberian musk deer	MODERN SPECIES	1219	XIRP1 (ENSMMSG00000022179)	CSRNP1 (ENSMMSG00000022195)	TTC21A (ENSMMSG00000022208)	GORASP1 (ENSMMSG00000022272)	WDR48 (ENSMMSG00000022352)	SCN11A (ENSMMSG00000022412)	SCN10A (ENSMMSG00000022570)	SCN5A (ENSMMSG00000022741)	EXOG (ENSMMSG00000023688)	ACVR2B (ENSMMSG00000023695)	XYLB (ENSMMSG00000023705)	SLC22A14 (ENSMMSG00000023718)	OXSR1 (ENSMMSG00000023728)	MYD88 (ENSMMSG00000023745)	ENSMMSG00000023769	ACAA1 (ENSMMSG00000023778) ##22	DLEC1 (ENSMMSG00000023812)	ENSMMSG00000023846	PLCD1 (ENSMMSG00000023851)	VILL (ENSMMSG00000023874)	CTDSPL (ENSMMSG00000023890)	ITGA9 (ENSMMSG00000023912)	ENSMMSG00000023927	ENSMMSG00000023933	GOLGA4 (ENSMMSG00000023943)	DCLK3 (ENSMMSG00000023981)	TRANK1 (ENSMMSG00000023994)	EPM2AIP1 (ENSMMSG00000024012)	MLH1 (ENSMMSG00000024032)	LRRFIP2 (ENSMMSG00000024059)	STAC (ENSMMSG00000024133)
Yarkand deer	MODERN SPECIES	16	CCR8 (ENSCHYG00000026277)	CX3CR1 (ENSCHYG00000026290)	XIRP1 (ENSCHYG00000026300)	CSRNP1 (ENSCHYG00000026309)	TTC21A (ENSCHYG00000026333)	GORASP1 (ENSCHYG00000026389)	WDR48 (ENSCHYG00000026426)	SCN11A (ENSCHYG00000026462)	SCN10A (ENSCHYG00000026482)	SCN5A (ENSCHYG00000013862)	EXOG (ENSCHYG00000014555)	XYLB (ENSCHYG00000014630)	SLC22A14 (ENSCHYG00000015323)	OXSR1 (ENSCHYG00000015512)	MYD88 (ENSCHYG00000016152)	ACAA1 (ENSCHYG00000017187) ##22	DLEC1 (ENSCHYG00000018131)	PLCD1 (ENSCHYG00000018682)	VILL (ENSCHYG00000018981)	CTDSPL (ENSCHYG00000019163)	ITGA9 (ENSCHYG00000019698)	ENSCHYG00000020164	GOLGA4 (ENSCHYG00000020281)	DCLK3 (ENSCHYG00000021985)	TRANK1 (ENSCHYG00000022098)	EPM2AIP1 (ENSCHYG00000022605)	MLH1 (ENSCHYG00000022653)	ENSCHYG00000023050	STAC (ENSCHYG00000023619)	ARPP21 (ENSCHYG00000023809)	ENSCHYG00000024073
Camelidae	ANCESTRAL SPECIES	7	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT01030000235089	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264173	ENSGT00940000155574.C
Alpaca	MODERN SPECIES	3117												ENSVPAG00000008144	SLC22A13 (ENSVPAG00000008142)	OXSR1 (ENSVPAG00000008140)	MYD88 (ENSVPAG00000008138)	ENSVPAG00000008136 ##22	ENSVPAG00000008129
Arabian camel	MODERN SPECIES	8	CSRNP1 (ENSCDRG00005019709)	TTC21A (ENSCDRG00005019602)	GORASP1 (ENSCDRG00005019488)	WDR48 (ENSCDRG00005019422)	SCN11A (ENSCDRG00005019096)	SCN10A (ENSCDRG00005018492)	ENSCDRG00005018449	SCN5A (ENSCDRG00005018324)	EXOG (ENSCDRG00005018214)	ACVR2B (ENSCDRG00005018161)	XYLB (ENSCDRG00005018064)	SLC22A14 (ENSCDRG00005017994)	SLC22A13 (ENSCDRG00005017926)	OXSR1 (ENSCDRG00005017858)	MYD88 (ENSCDRG00005017646)	ACAA1 (ENSCDRG00005017465) ##22	DLEC1 (ENSCDRG00005017249)	PLCD1 (ENSCDRG00005017073)	VILL (ENSCDRG00005016992)	CTDSPL (ENSCDRG00005016829)	ITGA9 (ENSCDRG00005016528)	GOLGA4 (ENSCDRG00005015319)	LRRFIP2 (ENSCDRG00005014822)	MLH1 (ENSCDRG00005014605)	EPM2AIP1 (ENSCDRG00005014584)	TRANK1 (ENSCDRG00005014501)	DCLK3 (ENSCDRG00005014456)	STAC (ENSCDRG00005014276)	ARPP21 (ENSCDRG00005014003)	ENSCDRG00005013888	ENSCDRG00005013481
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Primates	ANCESTRAL SPECIES	1	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476
Vervet Monkey	MODERN SPECIES	6	XIRP1 (ENSCSAG00000014789)	CSRNP1 (ENSCSAG00000014785)	TTC21A (ENSCSAG00000014762)	GORASP1 (ENSCSAG00000014694)	WDR48 (ENSCSAG00000014688)	SCN11A (ENSCSAG00000014661)	SCN10A (ENSCSAG00000014587)	SCN5A (ENSCSAG00000014541)	EXOG (ENSCSAG00000014513)	ACVR2B (ENSCSAG00000014496)	XYLB (ENSCSAG00000014482)	SLC22A14 (ENSCSAG00000014454)	SLC22A13 (ENSCSAG00000014421)	OXSR1 (ENSCSAG00000014406)	MYD88 (ENSCSAG00000014397)	ACAA1 (ENSCSAG00000014392) ##22	DLEC1 (ENSCSAG00000014334)	PLCD1 (ENSCSAG00000014196)	VILL (ENSCSAG00000014187)	CTDSPL (ENSCSAG00000014179)	ITGA9 (ENSCSAG00000014176)	ENSCSAG00000014170	GOLGA4 (ENSCSAG00000014165)	LRRFIP2 (ENSCSAG00000014156)	MLH1 (ENSCSAG00000014144)	EPM2AIP1 (ENSCSAG00000018877)	TRANK1 (ENSCSAG00000014138)	DCLK3 (ENSCSAG00000014127)	HRG (ENSCSAG00000014125)	FETUB (ENSCSAG00000014119)	AHSG (ENSCSAG00000014115)
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476
Macaca	ANCESTRAL SPECIES	5	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a.b	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00910000147786	ENSGT00940000153370.b	ENSGT00940000159476
Pig-tailed macaque	MODERN SPECIES	563	CSRNP1 (ENSMNEG00000031549)	TTC21A (ENSMNEG00000015306)	GORASP1 (ENSMNEG00000027322)	WDR48 (ENSMNEG00000033674)	SCN11A (ENSMNEG00000030032)	SCN10A (ENSMNEG00000031508)	SCN5A (ENSMNEG00000020729)	EXOG (ENSMNEG00000023586)	ACVR2B (ENSMNEG00000033690)	XYLB (ENSMNEG00000037396)	SLC22A14 (ENSMNEG00000042853)	SLC22A13 (ENSMNEG00000037730)	OXSR1 (ENSMNEG00000037482)	ENSMNEG00000003226	MYD88 (ENSMNEG00000039423)	ACAA1 (ENSMNEG00000027170) ##22	DLEC1 (ENSMNEG00000041215)	PLCD1 (ENSMNEG00000040817)	VILL (ENSMNEG00000038389)	CTDSPL (ENSMNEG00000031966)	ENSMNEG00000033365	ITGA9 (ENSMNEG00000045038)	ENSMNEG00000033582	GOLGA4 (ENSMNEG00000028430)	ENSMNEG00000017463	LRRFIP2 (ENSMNEG00000044558)	MLH1 (ENSMNEG00000045140)	EPM2AIP1 (ENSMNEG00000026385)	ENSMNEG00000037507	TRANK1 (ENSMNEG00000033902)	DCLK3 (ENSMNEG00000037509)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00530000063779.B	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.b.d.b.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00420000029746.e.b	ENSGT00950000182930.A.a
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000031636	CSRNP1 (ENSMFAG00000001132)	TTC21A (ENSMFAG00000045979)	GORASP1 (ENSMFAG00000000701)	WDR48 (ENSMFAG00000041723)	SCN11A (ENSMFAG00000041137)	SCN10A (ENSMFAG00000002008)	SCN5A (ENSMFAG00000041381)	EXOG (ENSMFAG00000040794)	ACVR2B (ENSMFAG00000041141)	XYLB (ENSMFAG00000001309)	SLC22A14 (ENSMFAG00000034664)	SLC22A13 (ENSMFAG00000035918)	OXSR1 (ENSMFAG00000041036)	MYD88 (ENSMFAG00000041701)	ACAA1 (ENSMFAG00000044207) ##22	DLEC1 (ENSMFAG00000043783)	ENSMFAG00000049188	PLCD1 (ENSMFAG00000042898)	VILL (ENSMFAG00000002052)	ENSMFAG00000054847	ITGA9 (ENSMFAG00000040607)	ENSMFAG00000028079	GOLGA4 (ENSMFAG00000043322)	ENSMFAG00000059005	LRRFIP2 (ENSMFAG00000032193)	MLH1 (ENSMFAG00000000774)	EPM2AIP1 (ENSMFAG00000025920)	ENSMFAG00000057811	TRANK1 (ENSMFAG00000001558)	DCLK3 (ENSMFAG00000043493)
Rhesus	MODERN SPECIES	11	CX3CR1 (ENSMMUG00000065286)	CSRNP1 (ENSMMUG00000020147)	TTC21A (ENSMMUG00000020145)	GORASP1 (ENSMMUG00000020144)	WDR48 (ENSMMUG00000020138)	SCN11A (ENSMMUG00000019962)	SCN10A (ENSMMUG00000015827)	SCN5A (ENSMMUG00000015825)	EXOG (ENSMMUG00000018792)	ACVR2B (ENSMMUG00000018790)	XYLB (ENSMMUG00000004847)	SLC22A14 (ENSMMUG00000004842)	SLC22A13 (ENSMMUG00000006480)	OXSR1 (ENSMMUG00000000996)	MYD88 (ENSMMUG00000000995)	ACAA1 (ENSMMUG00000000990) ##22	DLEC1 (ENSMMUG00000000987)	PLCD1 (ENSMMUG00000000985)	VILL (ENSMMUG00000000984)	CTDSPL (ENSMMUG00000002907)	ITGA9 (ENSMMUG00000021927)	ENSMMUG00000021925	GOLGA4 (ENSMMUG00000021918)	ENSMMUG00000058662	ENSMMUG00000054175	LRRFIP2 (ENSMMUG00000022539)	MLH1 (ENSMMUG00000022533)	EPM2AIP1 (ENSMMUG00000022532)	TRANK1 (ENSMMUG00000006816)	DCLK3 (ENSMMUG00000006812)	HRG (ENSMMUG00000018910)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000001627.f.a.b	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476
Olive baboon	MODERN SPECIES	11	CSRNP1 (ENSPANG00000020433)	TTC21A (ENSPANG00000015970)	GORASP1 (ENSPANG00000019845)	ENSPANG00000038413	SCN11A (ENSPANG00000024754)	SCN10A (ENSPANG00000011203)	ENSPANG00000042266	SCN5A (ENSPANG00000017810)	EXOG (ENSPANG00000004803)	ACVR2B (ENSPANG00000004182)	XYLB (ENSPANG00000008387)	SLC22A14 (ENSPANG00000008743)	SLC22A13 (ENSPANG00000004181)	OXSR1 (ENSPANG00000008509)	MYD88 (ENSPANG00000022480)	ACAA1 (ENSPANG00000006168) ##22	DLEC1 (ENSPANG00000026026)	PLCD1 (ENSPANG00000024753)	VILL (ENSPANG00000017458)	CTDSPL (ENSPANG00000026083)	ITGA9 (ENSPANG00000024752)	ENSPANG00000050307	ENSPANG00000002433	GOLGA4 (ENSPANG00000019565)	LRRFIP2 (ENSPANG00000017239)	MLH1 (ENSPANG00000017238)	EPM2AIP1 (ENSPANG00000024669)	TRANK1 (ENSPANG00000018588)	DCLK3 (ENSPANG00000018587)	HRG (ENSPANG00000019296)	FETUB (ENSPANG00000008475)
Cercopithecinae_d	ANCESTRAL SPECIES	52	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT00940000156519.l	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000001627.f.a.b	ENSGT00390000004487	ENSGT00730000111139	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00940000159476
Sooty mangabey	MODERN SPECIES	424	CSRNP1 (ENSCATG00000038472)	TTC21A (ENSCATG00000034534)	GORASP1 (ENSCATG00000013339)	WDR48 (ENSCATG00000045029)	SCN11A (ENSCATG00000040001)	SCN10A (ENSCATG00000032675)	SCN5A (ENSCATG00000002865)	EXOG (ENSCATG00000017315)	ACVR2B (ENSCATG00000037591)	ENSCATG00000025186	XYLB (ENSCATG00000038970)	SLC22A14 (ENSCATG00000035044)	SLC22A13 (ENSCATG00000042015)	OXSR1 (ENSCATG00000015484)	MYD88 (ENSCATG00000044210)	ACAA1 (ENSCATG00000032826) ##22	DLEC1 (ENSCATG00000040608)	PLCD1 (ENSCATG00000035843)	VILL (ENSCATG00000009166)	CTDSPL (ENSCATG00000044659)	ITGA9 (ENSCATG00000029950)	ENSCATG00000045299	ENSCATG00000045335	GOLGA4 (ENSCATG00000033265)	LRRFIP2 (ENSCATG00000043657)	ENSCATG00000036224	MLH1 (ENSCATG00000040935)	EPM2AIP1 (ENSCATG00000015693)	ENSCATG00000032441	TRANK1 (ENSCATG00000042564)	DCLK3 (ENSCATG00000040391)
Drill	MODERN SPECIES	1303	GORASP1 (ENSMLEG00000029840)	ENSMLEG00000020344	WDR48 (ENSMLEG00000040913)	SCN11A (ENSMLEG00000038031)	SCN10A (ENSMLEG00000029306)	SCN5A (ENSMLEG00000037189)	EXOG (ENSMLEG00000041016)	ACVR2B (ENSMLEG00000029381)	ENSMLEG00000029103	XYLB (ENSMLEG00000037076)	SLC22A14 (ENSMLEG00000042207)	SLC22A13 (ENSMLEG00000029273)	OXSR1 (ENSMLEG00000023701)	MYD88 (ENSMLEG00000031954)	ENSMLEG00000038441	ACAA1 (ENSMLEG00000003053) ##22	DLEC1 (ENSMLEG00000022212)	PLCD1 (ENSMLEG00000036936)	VILL (ENSMLEG00000042645)	CTDSPL (ENSMLEG00000016033)	ITGA9 (ENSMLEG00000041803)
Rhinopithecus	ANCESTRAL SPECIES	440									ENSGT00940000156519.l	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
Black snub-nosed monkey	MODERN SPECIES	1326								ENSRBIG00000043842	ENSRBIG00000027418	XYLB (ENSRBIG00000026713)	SLC22A14 (ENSRBIG00000030061)	SLC22A13 (ENSRBIG00000033484)	OXSR1 (ENSRBIG00000033383)	ENSRBIG00000002872	MYD88 (ENSRBIG00000028989)	ACAA1 (ENSRBIG00000037134) ##22	DLEC1 (ENSRBIG00000038813)	PLCD1 (ENSRBIG00000024575)	VILL (ENSRBIG00000029860)	CTDSPL (ENSRBIG00000041597)
Golden snub-nosed monkey	MODERN SPECIES	3171											XYLB (ENSRROG00000043334)	SLC22A14 (ENSRROG00000036809)	SLC22A13 (ENSRROG00000032984)	OXSR1 (ENSRROG00000033458)	MYD88 (ENSRROG00000028936)	ACAA1 (ENSRROG00000029840) ##22	DLEC1 (ENSRROG00000038265)	PLCD1 (ENSRROG00000033473)	VILL (ENSRROG00000029885)	CTDSPL (ENSRROG00000033987)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00940000153169.A.b.b.a.a.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c
Hominidae	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476
Gorilla	MODERN SPECIES	16	TTC21A (ENSGGOG00000016565)	ENSGGOG00000042215	GORASP1 (ENSGGOG00000024764)	WDR48 (ENSGGOG00000002185)	SCN11A (ENSGGOG00000006564)	SCN10A (ENSGGOG00000006446)	SCN5A (ENSGGOG00000012938)	EXOG (ENSGGOG00000010779)	ACVR2B (ENSGGOG00000001827)	XYLB (ENSGGOG00000015018)	SLC22A14 (ENSGGOG00000013189)	SLC22A13 (ENSGGOG00000010536)	ENSGGOG00000006333	MYD88 (ENSGGOG00000003831)	ENSGGOG00000037817	ACAA1 (ENSGGOG00000003822) ##22	DLEC1 (ENSGGOG00000003808)	PLCD1 (ENSGGOG00000003801)	VILL (ENSGGOG00000003789)	CTDSPL (ENSGGOG00000038894)	ENSGGOG00000012070	ITGA9 (ENSGGOG00000013044)	ENSGGOG00000023150	GOLGA4 (ENSGGOG00000023859)	LRRFIP2 (ENSGGOG00000001784)	ENSGGOG00000041659	MLH1 (ENSGGOG00000016342)	EPM2AIP1 (ENSGGOG00000027478)	ENSGGOG00000041962	TRANK1 (ENSGGOG00000005691)	ENSGGOG00000042033
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c	ENSGT00940000159476
Human	MODERN SPECIES	15	XIRP1 (ENSG00000168334)	CSRNP1 (ENSG00000144655)	TTC21A (ENSG00000168026)	GORASP1 (ENSG00000114745)	WDR48 (ENSG00000114742)	SCN11A (ENSG00000168356)	SCN10A (ENSG00000185313)	SCN5A (ENSG00000183873)	EXOG (ENSG00000157036)	ACVR2B (ENSG00000114739)	XYLB (ENSG00000093217)	SLC22A14 (ENSG00000144671)	SLC22A13 (ENSG00000172940)	OXSR1 (ENSG00000172939)	MYD88 (ENSG00000172936)	ACAA1 (ENSG00000060971) ##22	DLEC1 (ENSG00000008226)	PLCD1 (ENSG00000187091)	VILL (ENSG00000136059)	CTDSPL (ENSG00000144677)	ITGA9 (ENSG00000144668)	GOLGA4 (ENSG00000144674)	LRRFIP2 (ENSG00000093167)	MLH1 (ENSG00000076242)	EPM2AIP1 (ENSG00000178567)	TRANK1 (ENSG00000168016)	DCLK3 (ENSG00000163673)	STAC (ENSG00000144681)	ARPP21 (ENSG00000172995)	PDCD6IP (ENSG00000170248)	CLASP2 (ENSG00000163539)
Pan	ANCESTRAL SPECIES	2	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00390000015797.c.b.a.a	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00390000001627.f.a	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00390000007084.c.b.k.a.b	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00390000009837.a.b	ENSGT00940000153370.b	ENSGT00390000005727.a.b.a.a.c
Chimpanzee	MODERN SPECIES	16	TTC21A (ENSPTRG00000014767)	GORASP1 (ENSPTRG00000014766)	WDR48 (ENSPTRG00000014765)	SCN11A (ENSPTRG00000014764)	SCN10A (ENSPTRG00000014763)	SCN5A (ENSPTRG00000014762)	ENSPTRG00000048292	EXOG (ENSPTRG00000014761)	ACVR2B (ENSPTRG00000014760)	XYLB (ENSPTRG00000014758)	SLC22A14 (ENSPTRG00000014757)	SLC22A13 (ENSPTRG00000014756)	OXSR1 (ENSPTRG00000014755)	ENSPTRG00000050479	MYD88 (ENSPTRG00000014754)	ACAA1 (ENSPTRG00000014753) ##22	DLEC1 (ENSPTRG00000014752)	PLCD1 (ENSPTRG00000014751)	VILL (ENSPTRG00000014750)	CTDSPL (ENSPTRG00000014749)	ENSPTRG00000045219	ITGA9 (ENSPTRG00000014748)	ENSPTRG00000023429	GOLGA4 (ENSPTRG00000014746)	LRRFIP2 (ENSPTRG00000014745)	ENSPTRG00000016733	MLH1 (ENSPTRG00000014743)	EPM2AIP1 (ENSPTRG00000042530)	ENSPTRG00000051367	TRANK1 (ENSPTRG00000014741)	ENSPTRG00000045315
Bonobo	MODERN SPECIES	16	TTC21A (ENSPPAG00000038751)	GORASP1 (ENSPPAG00000037140)	WDR48 (ENSPPAG00000029758)	SCN11A (ENSPPAG00000029217)	SCN10A (ENSPPAG00000042803)	SCN5A (ENSPPAG00000036665)	ENSPPAG00000022727	EXOG (ENSPPAG00000032881)	ACVR2B (ENSPPAG00000043096)	XYLB (ENSPPAG00000024504)	SLC22A14 (ENSPPAG00000039391)	OXSR1 (ENSPPAG00000028571)	MYD88 (ENSPPAG00000037521)	ENSPPAG00000041044	ENSPPAG00000040424	ENSPPAG00000043368 ##22	DLEC1 (ENSPPAG00000041933)	PLCD1 (ENSPPAG00000026688)	VILL (ENSPPAG00000041495)	CTDSPL (ENSPPAG00000004964)	ENSPPAG00000037199	ITGA9 (ENSPPAG00000027284)	ENSPPAG00000040137	GOLGA4 (ENSPPAG00000035295)	LRRFIP2 (ENSPPAG00000039105)	ENSPPAG00000023507	MLH1 (ENSPPAG00000031143)	EPM2AIP1 (ENSPPAG00000021277)	ENSPPAG00000031051	TRANK1 (ENSPPAG00000031125)	ENSPPAG00000032170
Orangutan	MODERN SPECIES	16	ENSPPYG00000013997	CSRNP1 (ENSPPYG00000013998)	TTC21A (ENSPPYG00000013999)	GORASP1 (ENSPPYG00000014000)	WDR48 (ENSPPYG00000014001)	SCN11A (ENSPPYG00000014002)	SCN10A (ENSPPYG00000014003)	SCN5A (ENSPPYG00000014004)	EXOG (ENSPPYG00000032230)	ACVR2B (ENSPPYG00000014006)	XYLB (ENSPPYG00000014007)	SLC22A14 (ENSPPYG00000014008)	SLC22A13 (ENSPPYG00000014009)	OXSR1 (ENSPPYG00000014010)	MYD88 (ENSPPYG00000014011)	ACAA1 (ENSPPYG00000014012) ##22	DLEC1 (ENSPPYG00000014013)	PLCD1 (ENSPPYG00000014014)	VILL (ENSPPYG00000014015)	CTDSPL (ENSPPYG00000037385)	ITGA9 (ENSPPYG00000014017)	GOLGA4 (ENSPPYG00000014019)	LRRFIP2 (ENSPPYG00000014020)	MLH1 (ENSPPYG00000014021)	TRANK1 (ENSPPYG00000014023)	DCLK3 (ENSPPYG00000014025)	STAC (ENSPPYG00000014026)	ARPP21 (ENSPPYG00000014027)	PDCD6IP (ENSPPYG00000014028)	CLASP2 (ENSPPYG00000014029)	UBP1 (ENSPPYG00000014030)
Gibbon	MODERN SPECIES	19	XIRP1 (ENSNLEG00000005609)	CSRNP1 (ENSNLEG00000029751)	TTC21A (ENSNLEG00000005562)	GORASP1 (ENSNLEG00000005538)	WDR48 (ENSNLEG00000005481)	SCN11A (ENSNLEG00000026898)	SCN10A (ENSNLEG00000031545)	SCN5A (ENSNLEG00000005433)	EXOG (ENSNLEG00000005421)	ACVR2B (ENSNLEG00000005401)	XYLB (ENSNLEG00000005394)	ENSNLEG00000005389	SLC22A13 (ENSNLEG00000005376)	OXSR1 (ENSNLEG00000005345)	MYD88 (ENSNLEG00000005333)	ACAA1 (ENSNLEG00000005241) ##22	DLEC1 (ENSNLEG00000005235)	PLCD1 (ENSNLEG00000005174)	VILL (ENSNLEG00000005147)	CTDSPL (ENSNLEG00000028190)	ITGA9 (ENSNLEG00000005089)	ENSNLEG00000034528	ENSNLEG00000005086	GOLGA4 (ENSNLEG00000005062)	LRRFIP2 (ENSNLEG00000004992)	ENSNLEG00000033765	MLH1 (ENSNLEG00000004886)	EPM2AIP1 (ENSNLEG00000018533)	TRANK1 (ENSNLEG00000004872)	ENSNLEG00000028218	DCLK3 (ENSNLEG00000004871)
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177.a	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Cebidae	ANCESTRAL SPECIES	22	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177.a	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177.a	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT00940000163083
Bolivian squirrel monkey	MODERN SPECIES	83	XIRP1 (ENSSBOG00000033629)	CSRNP1 (ENSSBOG00000028144)	TTC21A (ENSSBOG00000028122)	GORASP1 (ENSSBOG00000011915)	WDR48 (ENSSBOG00000019125)	SCN11A (ENSSBOG00000028882)	SCN10A (ENSSBOG00000032823)	SCN5A (ENSSBOG00000023746)	EXOG (ENSSBOG00000031108)	ACVR2B (ENSSBOG00000029161)	XYLB (ENSSBOG00000022723)	SLC22A14 (ENSSBOG00000029548)	SLC22A13 (ENSSBOG00000024268)	OXSR1 (ENSSBOG00000022583)	MYD88 (ENSSBOG00000036185)	ACAA1 (ENSSBOG00000027604) ##22	ENSSBOG00000004101	DLEC1 (ENSSBOG00000032370)	PLCD1 (ENSSBOG00000030637)	VILL (ENSSBOG00000034583)	CTDSPL (ENSSBOG00000033064)	ITGA9 (ENSSBOG00000029467)	ENSSBOG00000030298	GOLGA4 (ENSSBOG00000020464)	LRRFIP2 (ENSSBOG00000022125)	MLH1 (ENSSBOG00000027454)	EPM2AIP1 (ENSSBOG00000019592)	ENSSBOG00000024937	TRANK1 (ENSSBOG00000032312)	DCLK3 (ENSSBOG00000033741)	STAC (ENSSBOG00000026974)
Capuchin	MODERN SPECIES	391	CSRNP1 (ENSCCAG00000031152)	TTC21A (ENSCCAG00000033019)	GORASP1 (ENSCCAG00000024092)	WDR48 (ENSCCAG00000035592)	ENSCCAG00000037437	SCN11A (ENSCCAG00000025119)	SCN10A (ENSCCAG00000037010)	SCN5A (ENSCCAG00000023536)	EXOG (ENSCCAG00000022851)	ACVR2B (ENSCCAG00000028385)	XYLB (ENSCCAG00000022508)	SLC22A14 (ENSCCAG00000032720)	SLC22A13 (ENSCCAG00000029630)	OXSR1 (ENSCCAG00000033133)	MYD88 (ENSCCAG00000025699)	ACAA1 (ENSCCAG00000023233) ##22	DLEC1 (ENSCCAG00000028153)	PLCD1 (ENSCCAG00000027845)	VILL (ENSCCAG00000019140)	CTDSPL (ENSCCAG00000035258)	ITGA9 (ENSCCAG00000021494)	GOLGA4 (ENSCCAG00000021163)	ENSCCAG00000033053	MLH1 (ENSCCAG00000019967)	EPM2AIP1 (ENSCCAG00000011505)	TRANK1 (ENSCCAG00000024087)	DCLK3 (ENSCCAG00000034655)	STAC (ENSCCAG00000029258)
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	8	ENSCJAG00000042291	CX3CR1 (ENSCJAG00000009704)	XIRP1 (ENSCJAG00000009706)	CSRNP1 (ENSCJAG00000009708)	GORASP1 (ENSCJAG00000009752)	WDR48 (ENSCJAG00000009759)	SCN11A (ENSCJAG00000009856)	ENSCJAG00000064984	SCN10A (ENSCJAG00000031394)	SCN5A (ENSCJAG00000009878)	EXOG (ENSCJAG00000010063)	ACVR2B (ENSCJAG00000010067)	XYLB (ENSCJAG00000010114)	SLC22A13 (ENSCJAG00000010167)	OXSR1 (ENSCJAG00000010173)	ENSCJAG00000010212 ##22	ENSCJAG00000071452	DLEC1 (ENSCJAG00000010226)	PLCD1 (ENSCJAG00000012734)	MYD88 (ENSCJAG00000010193)	VILL (ENSCJAG00000012715)	CTDSPL (ENSCJAG00000012699)	ITGA9 (ENSCJAG00000012661)	GOLGA4 (ENSCJAG00000012602)	ENSCJAG00000082213	LRRFIP2 (ENSCJAG00000012550)	ENSCJAG00000076469	MLH1 (ENSCJAG00000012414)	EPM2AIP1 (ENSCJAG00000012409)	TRANK1 (ENSCJAG00000012388)	DCLK3 (ENSCJAG00000012380)
Marmoset	MODERN SPECIES	2	DKK3 (ENSCJAG00000010506)	ENSCJAG00000010368	PARVA (ENSCJAG00000010314)	ENSCJAG00000052611	TEAD1 (ENSCJAG00000010263)	ENSCJAG00000072498	RASSF10 (ENSCJAG00000085759)	BMAL1 (ENSCJAG00000010162)	BTBD10 (ENSCJAG00000010121)	PTH (ENSCJAG00000010117)	ENSCJAG00000076330	ENSCJAG00000070220	FAR1 (ENSCJAG00000010077)	SPON1 (ENSCJAG00000010055)	ENSCJAG00000040842	ENSCJAG00000046068 ##22	COPB1 (ENSCJAG00000038149)	PSMA1 (ENSCJAG00000009850)	ENSCJAG00000082675	ENSCJAG00000086676	PDE3B (ENSCJAG00000009800)	CYP2R1 (ENSCJAG00000009776)	ENSCJAG00000075982	ENSCJAG00000009757	CALCB (ENSCJAG00000072821)	INSC (ENSCJAG00000009705)	ENSCJAG00000084026	SOX6 (ENSCJAG00000009643)	ENSCJAG00000080150	C11orf58 (ENSCJAG00000041748)	PLEKHA7 (ENSCJAG00000009589)
Mas night monkey	MODERN SPECIES	1074	TTC21A (ENSANAG00000035657)	GORASP1 (ENSANAG00000025911)	WDR48 (ENSANAG00000001805)	SCN11A (ENSANAG00000021625)	SCN10A (ENSANAG00000031852)	SCN5A (ENSANAG00000028084)	EXOG (ENSANAG00000025128)	ACVR2B (ENSANAG00000034446)	XYLB (ENSANAG00000033524)	ENSANAG00000031540	ENSANAG00000008213	SLC22A13 (ENSANAG00000029827)	OXSR1 (ENSANAG00000021659)	MYD88 (ENSANAG00000023716)	ENSANAG00000021999	ACAA1 (ENSANAG00000023775) ##22	DLEC1 (ENSANAG00000026994)	ENSANAG00000025014	PLCD1 (ENSANAG00000034450)	VILL (ENSANAG00000023408)	CTDSPL (ENSANAG00000029412)	ITGA9 (ENSANAG00000031547)	GOLGA4 (ENSANAG00000023104)	LRRFIP2 (ENSANAG00000020666)	ENSANAG00000028316	EPM2AIP1 (ENSANAG00000031695)	TRANK1 (ENSANAG00000023111)	DCLK3 (ENSANAG00000021846)	ENSANAG00000023757	STAC (ENSANAG00000021171)	ARPP21 (ENSANAG00000035141)
Tarsier	MODERN SPECIES	6193											XYLB (ENSTSYG00000037073)	SLC22A14 (ENSTSYG00000012883)	SLC22A13 (ENSTSYG00000003279)	OXSR1 (ENSTSYG00000000706)	ENSTSYG00000035176	ACAA1 (ENSTSYG00000000229) ##22	DLEC1 (ENSTSYG00000014641)	PLCD1 (ENSTSYG00000006868)	VILL (ENSTSYG00000026544)	CTDSPL (ENSTSYG00000003678)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628
Lemuriformes	ANCESTRAL SPECIES	17	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00390000004487	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263628
Mouse lemur	MODERN SPECIES		TTC21A (ENSMICG00000049173)	GORASP1 (ENSMICG00000049376)	ENSMICG00000048955	ENSMICG00000048876	SCN11A (ENSMICG00000049555)	SCN10A (ENSMICG00000048891)	SCN5A (ENSMICG00000049061)	ENSMICG00000048864	EXOG (ENSMICG00000049024)	ACVR2B (ENSMICG00000049276)	XYLB (ENSMICG00000049532)	ENSMICG00000048979	ENSMICG00000049195	OXSR1 (ENSMICG00000049561)	MYD88 (ENSMICG00000048892)	ACAA1 (ENSMICG00000049114) ##22	DLEC1 (ENSMICG00000048479)	PLCD1 (ENSMICG00000049360)	VILL (ENSMICG00000049059)	CTDSPL (ENSMICG00000049342)	ITGA9 (ENSMICG00000048957)	ENSMICG00000049198	GOLGA4 (ENSMICG00000049427)	LRRFIP2 (ENSMICG00000048972)	MLH1 (ENSMICG00000049403)	TRANK1 (ENSMICG00000048569)	DCLK3 (ENSMICG00000049233)	STAC (ENSMICG00000048960)	ENSMICG00000049147	ARPP21 (ENSMICG00000049108)	ENSMICG00000049253
Lemuriformes_a	ANCESTRAL SPECIES	6	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00910000148110	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b
Coquerels sifaka	MODERN SPECIES	50	CSRNP1 (ENSPCOG00000022348)	TTC21A (ENSPCOG00000019544)	GORASP1 (ENSPCOG00000028402)	WDR48 (ENSPCOG00000018608)	ENSPCOG00000027832	SCN11A (ENSPCOG00000013185)	SCN10A (ENSPCOG00000028369)	SCN5A (ENSPCOG00000014260)	EXOG (ENSPCOG00000019058)	ACVR2B (ENSPCOG00000014529)	ENSPCOG00000018444	XYLB (ENSPCOG00000025871)	SLC22A13 (ENSPCOG00000012427)	OXSR1 (ENSPCOG00000007221)	MYD88 (ENSPCOG00000028015)	ACAA1 (ENSPCOG00000021130) ##22	DLEC1 (ENSPCOG00000027222)	PLCD1 (ENSPCOG00000006578)	VILL (ENSPCOG00000024243)	CTDSPL (ENSPCOG00000027370)	ITGA9 (ENSPCOG00000027840)	GOLGA4 (ENSPCOG00000022462)	LRRFIP2 (ENSPCOG00000017954)	MLH1 (ENSPCOG00000012761)	TRANK1 (ENSPCOG00000023270)	DCLK3 (ENSPCOG00000020383)	STAC (ENSPCOG00000014073)
Greater bamboo lemur	MODERN SPECIES	461												SLC22A14 (ENSPSMG00000014444)	SLC22A13 (ENSPSMG00000014451)	OXSR1 (ENSPSMG00000014517)	MYD88 (ENSPSMG00000014566)	ACAA1 (ENSPSMG00000014724) ##22	DLEC1 (ENSPSMG00000014983)	PLCD1 (ENSPSMG00000015092)	VILL (ENSPSMG00000015261)	CTDSPL (ENSPSMG00000015299)	ITGA9 (ENSPSMG00000015396)	GOLGA4 (ENSPSMG00000015608)	ENSPSMG00000015692	LRRFIP2 (ENSPSMG00000016003)	MLH1 (ENSPSMG00000016260)	EPM2AIP1 (ENSPSMG00000016284)
Bushbaby	MODERN SPECIES	117												ENSOGAG00000025994	SLC22A13 (ENSOGAG00000009080)	OXSR1 (ENSOGAG00000009070)	MYD88 (ENSOGAG00000006232)	ACAA1 (ENSOGAG00000006227) ##22	DLEC1 (ENSOGAG00000009056)	PLCD1 (ENSOGAG00000008061)	VILL (ENSOGAG00000008057)	CTDSPL (ENSOGAG00000004624)	ENSOGAG00000034113	ITGA9 (ENSOGAG00000004436)	GOLGA4 (ENSOGAG00000027706)	ENSOGAG00000029650	LRRFIP2 (ENSOGAG00000008423)	MLH1 (ENSOGAG00000008416)	EPM2AIP1 (ENSOGAG00000032395)	TRANK1 (ENSOGAG00000026991)	DCLK3 (ENSOGAG00000028781)	STAC (ENSOGAG00000007133)	ARPP21 (ENSOGAG00000009701)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000163083
Glires	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000163083
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000177252
Rodentia_A	ANCESTRAL SPECIES	29												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Sciuridae	ANCESTRAL SPECIES	37												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710	ENSGT00940000155574.C
Marmotini	DUPLICATION
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	12	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT01030000234626.C.e.b ##22	ENSGT00510000048324	ENSGT00940000162134	ENSGT00940000154607.b.a	ENSGT00940000162395	ENSGT01030000234626.C.e.a ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710	ENSGT00940000155574.C
Marmotini_b	ANCESTRAL SPECIES	24	ENSGT00950000183072.a	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT01030000234626.C.e.b ##22	ENSGT00510000048324	ENSGT00940000162134	ENSGT00940000154607.b.a	ENSGT00940000162395	ENSGT01030000234626.C.e.a ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000263710	ENSGT00940000155574.C
Squirrel	MODERN SPECIES	73	CSRNP1 (ENSSTOG00000026227)	TTC21A (ENSSTOG00000011477)	GORASP1 (ENSSTOG00000022044)	WDR48 (ENSSTOG00000011459)	SCN11A (ENSSTOG00000026394)	SCN10A (ENSSTOG00000021843)	SCN5A (ENSSTOG00000011601)	EXOG (ENSSTOG00000031572)	ACVR2B (ENSSTOG00000014862)	XYLB (ENSSTOG00000014855)	ENSSTOG00000006356 ##22	MYD88 (ENSSTOG00000013647)	OXSR1 (ENSSTOG00000020956)	SLC22A13 (ENSSTOG00000025499)	SLC22A14 (ENSSTOG00000005489)	ENSSTOG00000013634 ##22	PLCD1 (ENSSTOG00000001537)	ENSSTOG00000001524	CTDSPL (ENSSTOG00000001517)	ENSSTOG00000029563	ITGA9 (ENSSTOG00000009402)	GOLGA4 (ENSSTOG00000019749)	LRRFIP2 (ENSSTOG00000023775)	MLH1 (ENSSTOG00000005413)	EPM2AIP1 (ENSSTOG00000028877)	ENSSTOG00000033099	TRANK1 (ENSSTOG00000027352)	DCLK3 (ENSSTOG00000028839)	STAC (ENSSTOG00000005934)	ARPP21 (ENSSTOG00000008350)	ENSSTOG00000003420
Arctic ground squirrel	MODERN SPECIES	11											ENSUPAG00010006434 ##22	MYD88 (ENSUPAG00010006426)	OXSR1 (ENSUPAG00010006413)	SLC22A13 (ENSUPAG00010006404)	SLC22A14 (ENSUPAG00010006376)	ENSUPAG00010006366 ##22	DLEC1 (ENSUPAG00010006279)	PLCD1 (ENSUPAG00010006225)	VILL (ENSUPAG00010006192)	CTDSPL (ENSUPAG00010006173)	ITGA9 (ENSUPAG00010006117)	GOLGA4 (ENSUPAG00010005954)	LRRFIP2 (ENSUPAG00010005307)	MLH1 (ENSUPAG00010005272)	EPM2AIP1 (ENSUPAG00010005264)	ENSUPAG00010005263	ENSUPAG00010005258	TRANK1 (ENSUPAG00010005066)	DCLK3 (ENSUPAG00010005058)	STAC (ENSUPAG00010005051)	ARPP21 (ENSUPAG00010004968)
Alpin marmot	MODERN SPECIES	24	TTC21A (ENSMMMG00000010082)	ENSMMMG00000010145	WDR48 (ENSMMMG00000010175)	SCN11A (ENSMMMG00000010245)	SCN10A (ENSMMMG00000010349)	SCN5A (ENSMMMG00000010442)	ENSMMMG00000010573	ACVR2B (ENSMMMG00000010587)	XYLB (ENSMMMG00000010614)	ENSMMMG00000010769 ##22	ENSMMMG00000010794 ##22	MYD88 (ENSMMMG00000010859)	OXSR1 (ENSMMMG00000010867)	SLC22A13 (ENSMMMG00000010898)	SLC22A14 (ENSMMMG00000010920)	ENSMMMG00000010999 ##22	ENSMMMG00000011030	DLEC1 (ENSMMMG00000011038)	PLCD1 (ENSMMMG00000011107)	VILL (ENSMMMG00000011164)	CTDSPL (ENSMMMG00000011221)	ITGA9 (ENSMMMG00000011265)	ENSMMMG00000011335	ENSMMMG00000011345	GOLGA4 (ENSMMMG00000011361)	LRRFIP2 (ENSMMMG00000011434)	MLH1 (ENSMMMG00000011531)	EPM2AIP1 (ENSMMMG00000011565)	ENSMMMG00000011569	TRANK1 (ENSMMMG00000011577)	DCLK3 (ENSMMMG00000011687)
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT01030000234626.C.e.a ##22	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.e.b ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B	ENSGT00550000075117	ENSGT00950000183099.u.b.a.a.a.a.b.b.n
Marmotini_b	ANCESTRAL SPECIES	24	ENSGT00940000153370.b	ENSGT00950000182812.E	ENSGT00800000124177	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT01030000234626.C.e.a ##22	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.e.b ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B	ENSGT00550000075117	ENSGT00950000183099.u.b.a.a.a.a.b.b.n
Squirrel	MODERN SPECIES	73	ENSSTOG00000033099	EPM2AIP1 (ENSSTOG00000028877)	MLH1 (ENSSTOG00000005413)	LRRFIP2 (ENSSTOG00000023775)	GOLGA4 (ENSSTOG00000019749)	ITGA9 (ENSSTOG00000009402)	ENSSTOG00000029563	CTDSPL (ENSSTOG00000001517)	ENSSTOG00000001524	PLCD1 (ENSSTOG00000001537)	ENSSTOG00000013634 ##22	SLC22A14 (ENSSTOG00000005489)	SLC22A13 (ENSSTOG00000025499)	OXSR1 (ENSSTOG00000020956)	MYD88 (ENSSTOG00000013647)	ENSSTOG00000006356 ##22	XYLB (ENSSTOG00000014855)	ACVR2B (ENSSTOG00000014862)	EXOG (ENSSTOG00000031572)	SCN5A (ENSSTOG00000011601)	SCN10A (ENSSTOG00000021843)	SCN11A (ENSSTOG00000026394)	WDR48 (ENSSTOG00000011459)	GORASP1 (ENSSTOG00000022044)	TTC21A (ENSSTOG00000011477)	CSRNP1 (ENSSTOG00000026227)	XIRP1 (ENSSTOG00000029242)	CX3CR1 (ENSSTOG00000022978)	CCR8 (ENSSTOG00000014102)	SLC25A38 (ENSSTOG00000020267)	ENSSTOG00000014070
Arctic ground squirrel	MODERN SPECIES	11	ENSUPAG00010005263	EPM2AIP1 (ENSUPAG00010005264)	MLH1 (ENSUPAG00010005272)	LRRFIP2 (ENSUPAG00010005307)	GOLGA4 (ENSUPAG00010005954)	ITGA9 (ENSUPAG00010006117)	CTDSPL (ENSUPAG00010006173)	VILL (ENSUPAG00010006192)	PLCD1 (ENSUPAG00010006225)	DLEC1 (ENSUPAG00010006279)	ENSUPAG00010006366 ##22	SLC22A14 (ENSUPAG00010006376)	SLC22A13 (ENSUPAG00010006404)	OXSR1 (ENSUPAG00010006413)	MYD88 (ENSUPAG00010006426)	ENSUPAG00010006434 ##22
Alpin marmot	MODERN SPECIES	24	LRRFIP2 (ENSMMMG00000011434)	GOLGA4 (ENSMMMG00000011361)	ENSMMMG00000011345	ENSMMMG00000011335	ITGA9 (ENSMMMG00000011265)	CTDSPL (ENSMMMG00000011221)	VILL (ENSMMMG00000011164)	PLCD1 (ENSMMMG00000011107)	DLEC1 (ENSMMMG00000011038)	ENSMMMG00000011030	ENSMMMG00000010999 ##22	SLC22A14 (ENSMMMG00000010920)	SLC22A13 (ENSMMMG00000010898)	OXSR1 (ENSMMMG00000010867)	MYD88 (ENSMMMG00000010859)	ENSMMMG00000010794 ##22	ENSMMMG00000010769 ##22	XYLB (ENSMMMG00000010614)	ACVR2B (ENSMMMG00000010587)	ENSMMMG00000010573	SCN5A (ENSMMMG00000010442)	SCN10A (ENSMMMG00000010349)	SCN11A (ENSMMMG00000010245)	WDR48 (ENSMMMG00000010175)	ENSMMMG00000010145	TTC21A (ENSMMMG00000010082)	CSRNP1 (ENSMMMG00000010046)	XIRP1 (ENSMMMG00000010043)	CX3CR1 (ENSMMMG00000010040)	CCR8 (ENSMMMG00000010034)	SLC25A38 (ENSMMMG00000009978)
Marmotini	ANCESTRAL SPECIES																	ENSGT01030000234626.C.f ##22
Alpin marmot	MODERN SPECIES	24	GOLGA4 (ENSMMMG00000011361)	ENSMMMG00000011345	ENSMMMG00000011335	ITGA9 (ENSMMMG00000011265)	CTDSPL (ENSMMMG00000011221)	VILL (ENSMMMG00000011164)	PLCD1 (ENSMMMG00000011107)	DLEC1 (ENSMMMG00000011038)	ENSMMMG00000011030	ENSMMMG00000010999 ##22	SLC22A14 (ENSMMMG00000010920)	SLC22A13 (ENSMMMG00000010898)	OXSR1 (ENSMMMG00000010867)	MYD88 (ENSMMMG00000010859)	ENSMMMG00000010794 ##22	ENSMMMG00000010769 ##22	XYLB (ENSMMMG00000010614)	ACVR2B (ENSMMMG00000010587)	ENSMMMG00000010573	SCN5A (ENSMMMG00000010442)	SCN10A (ENSMMMG00000010349)	SCN11A (ENSMMMG00000010245)	WDR48 (ENSMMMG00000010175)	ENSMMMG00000010145	TTC21A (ENSMMMG00000010082)	CSRNP1 (ENSMMMG00000010046)	XIRP1 (ENSMMMG00000010043)	CX3CR1 (ENSMMMG00000010040)	CCR8 (ENSMMMG00000010034)	SLC25A38 (ENSMMMG00000009978)	ENSMMMG00000009931
Marmotini_b	ANCESTRAL SPECIES																	ENSGT01030000234626.C.f ##22
Arctic ground squirrel	MODERN SPECIES	251																ENSUPAG00010010383 ##22	ENSUPAG00010010402	XYLB (ENSUPAG00010010422)	ACVR2B (ENSUPAG00010010442)	EXOG (ENSUPAG00010010465)	SCN5A (ENSUPAG00010010481)	SCN10A (ENSUPAG00010010549)	SCN11A (ENSUPAG00010010615)	WDR48 (ENSUPAG00010010707)	GORASP1 (ENSUPAG00010010776)	TTC21A (ENSUPAG00010010809)	CSRNP1 (ENSUPAG00010010921)	CX3CR1 (ENSUPAG00010010933)	CCR8 (ENSUPAG00010010938)	SLC25A38 (ENSUPAG00010010942)	ENSUPAG00010010947
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	7	GORASP1 (ENSSVLG00005022690)	WDR48 (ENSSVLG00005022801)	SCN11A (ENSSVLG00005022915)	SCN10A (ENSSVLG00005023368)	SCN5A (ENSSVLG00005023875)	ENSSVLG00005024654	EXOG (ENSSVLG00005024674)	ACVR2B (ENSSVLG00005024714)	XYLB (ENSSVLG00005024748)	ENSSVLG00005024767 ##22	MYD88 (ENSSVLG00005024794)	OXSR1 (ENSSVLG00005024902)	SLC22A13 (ENSSVLG00005024940)	SLC22A14 (ENSSVLG00005024984)	ENSSVLG00005025004	ENSSVLG00005025057 ##22	DLEC1 (ENSSVLG00005025112)	PLCD1 (ENSSVLG00005025174)	ENSSVLG00005025221	CTDSPL (ENSSVLG00005025247)	ITGA9 (ENSSVLG00005012250)	GOLGA4 (ENSSVLG00005012688)	LRRFIP2 (ENSSVLG00005013687)	MLH1 (ENSSVLG00005013997)	EPM2AIP1 (ENSSVLG00005014305)	DCLK3 (ENSSVLG00005014534)	STAC (ENSSVLG00005014652)	ENSSVLG00005014908	ARPP21 (ENSSVLG00005015042)	ENSSVLG00005015643	ENSSVLG00005015672
Eurasian red squirrel	MODERN SPECIES	7	EPM2AIP1 (ENSSVLG00005014305)	MLH1 (ENSSVLG00005013997)	LRRFIP2 (ENSSVLG00005013687)	GOLGA4 (ENSSVLG00005012688)	ITGA9 (ENSSVLG00005012250)	CTDSPL (ENSSVLG00005025247)	ENSSVLG00005025221	PLCD1 (ENSSVLG00005025174)	DLEC1 (ENSSVLG00005025112)	ENSSVLG00005025057 ##22	ENSSVLG00005025004	SLC22A14 (ENSSVLG00005024984)	SLC22A13 (ENSSVLG00005024940)	OXSR1 (ENSSVLG00005024902)	MYD88 (ENSSVLG00005024794)	ENSSVLG00005024767 ##22	XYLB (ENSSVLG00005024748)	ACVR2B (ENSSVLG00005024714)	EXOG (ENSSVLG00005024674)	ENSSVLG00005024654	SCN5A (ENSSVLG00005023875)	SCN10A (ENSSVLG00005023368)	SCN11A (ENSSVLG00005022915)	WDR48 (ENSSVLG00005022801)	GORASP1 (ENSSVLG00005022690)	TTC21A (ENSSVLG00005022643)	CSRNP1 (ENSSVLG00005022609)	XIRP1 (ENSSVLG00005022577)	ENSSVLG00005022561	CX3CR1 (ENSSVLG00005022515)	ENSSVLG00005022488
Hystricomorpha	DUPLICATION
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES	18	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00530000063557.a	ENSGT00950000182824.a.b.a	ENSGT00390000011230	ENSGT01050000244882.a.a.b	ENSGT00950000183006.B.f.b.b	ENSGT00440000038003	ENSGT00940000158813	ENSGT00940000154607.b.a.m	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.i.a ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B	ENSGT00930000151029	ENSGT00940000157406
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000012500	SETD5 (ENSHGLG00000016297)	ENSHGLG00000016200	SRGAP3 (ENSHGLG00000009965)	RAD18 (ENSHGLG00000009196)	OXTR (ENSHGLG00000007183)	CAV3 (ENSHGLG00000006699)	SSUH2 (ENSHGLG00000008957)	ENSHGLG00000006418	ENSHGLG00000037885	ENSHGLG00000045449	ENSHGLG00000033882	ENSHGLG00000009519	ENSHGLG00000038431	ENSHGLG00000009713	ENSHGLG00000006515 ##22	ENSHGLG00000018221	ENSHGLG00000014483	EXOG (ENSHGLG00000050843)	SCN5A (ENSHGLG00000013636)	SCN10A (ENSHGLG00000012062)	SCN11A (ENSHGLG00000010002)	ENSHGLG00000042198	ENSHGLG00000043603	WDR48 (ENSHGLG00000012849)	GORASP1 (ENSHGLG00000011654)	TTC21A (ENSHGLG00000007505)	CSRNP1 (ENSHGLG00000011052)	XIRP1 (ENSHGLG00000021303)	CX3CR1 (ENSHGLG00000016099)	ENSHGLG00000021278
Hystricomorpha_a	ANCESTRAL SPECIES	36	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00530000063557.a	ENSGT00950000182824.a.b.a	ENSGT00390000011230	ENSGT01050000244882.a.a.b	ENSGT00950000183006.B.f.b.b	ENSGT00440000038003	ENSGT00940000158813	ENSGT00940000154607.b.a.m	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.i.a ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B	ENSGT00930000151029	ENSGT00940000157406
Hystricomorpha_b	ANCESTRAL SPECIES	32	ENSGT00640000091554	ENSGT00940000157794	ENSGT00940000159659	ENSGT00390000018852	ENSGT00990000203541.a.b	ENSGT00940000157446	ENSGT00530000063557.a	ENSGT00950000182824.a.b.a	ENSGT00390000011230	ENSGT01050000244882.a.a.b	ENSGT00950000183006.B.f.b.b	ENSGT00440000038003	ENSGT00940000158813	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.i.a ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B	ENSGT00930000151029	ENSGT00940000157406
Long-tailed chinchilla	MODERN SPECIES	134														OXSR1 (ENSCLAG00000014735)	MYD88 (ENSCLAG00000013371)	ENSCLAG00000011568 ##22	XYLB (ENSCLAG00000011175)	ACVR2B (ENSCLAG00000011980)	EXOG (ENSCLAG00000009371)	SCN5A (ENSCLAG00000009426)	SCN10A (ENSCLAG00000014603)	ENSCLAG00000009763	SCN11A (ENSCLAG00000010670)	WDR48 (ENSCLAG00000017373)	GORASP1 (ENSCLAG00000010087)	TTC21A (ENSCLAG00000013763)	CSRNP1 (ENSCLAG00000010879)	XIRP1 (ENSCLAG00000017823)	ENSCLAG00000014747	CX3CR1 (ENSCLAG00000014102)	CCR8 (ENSCLAG00000014415)
Degu	MODERN SPECIES	188						PLXNB1 (ENSODEG00000006235)	CCDC51 (ENSODEG00000006625)	ENSODEG00000007257	ENSODEG00000005387	ENSODEG00000005802	SSUH2 (ENSODEG00000005982)	LMCD1 (ENSODEG00000005248)	ENSODEG00000007487	OXSR1 (ENSODEG00000006997)	MYD88 (ENSODEG00000008295)	ENSODEG00000005516 ##22	XYLB (ENSODEG00000007248)	ACVR2B (ENSODEG00000007431)	EXOG (ENSODEG00000005422)	SCN5A (ENSODEG00000007060)	SCN10A (ENSODEG00000008864)	SCN11A (ENSODEG00000007098)	WDR48 (ENSODEG00000006712)	ENSODEG00000006160	GORASP1 (ENSODEG00000009484)	TTC21A (ENSODEG00000006879)	CSRNP1 (ENSODEG00000006413)	CX3CR1 (ENSODEG00000019304)	ENSODEG00000006693	ENSODEG00000007249	ENSODEG00000006296
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00940000160606	ENSGT00940000155198.C	ENSGT00940000160890	ENSGT00390000009678	ENSGT00390000016404	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00390000008983.a	ENSGT00940000155071.E	ENSGT00940000158384	ENSGT00940000154861	ENSGT00940000157717	ENSGT01030000234648.a.a.d	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Hystricomorpha_a	ANCESTRAL SPECIES	45	ENSGT00940000160606	ENSGT00940000155198.C	ENSGT00940000160890	ENSGT00390000009678	ENSGT00390000016404	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00390000008983.a	ENSGT00940000155071.E	ENSGT00940000158384	ENSGT00940000154861	ENSGT00940000157717	ENSGT01030000234648.a.a.d	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Hystricomorpha_b	ANCESTRAL SPECIES	42	ENSGT00940000160606	ENSGT00940000155198.C	ENSGT00940000160890	ENSGT00390000009678	ENSGT00390000016404	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00390000008983.a	ENSGT00940000155071.E	ENSGT00940000158384	ENSGT00940000154861	ENSGT00940000157717	ENSGT01030000234648.a.a.d	ENSGT00940000154607.b.a.n	ENSGT00940000162395	ENSGT01030000234626.C.i.b ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00530000063564.a	ENSGT00800000124177	ENSGT00950000182812.E	ENSGT00940000153370.b	ENSGT00940000159476	ENSGT00950000183092.b.b	ENSGT00940000160796	ENSGT01100000264025	ENSGT00940000155574.C
Long-tailed chinchilla	MODERN SPECIES	128	CNTN6 (ENSCLAG00000008602)	CNTN4 (ENSCLAG00000006463)	IL5RA (ENSCLAG00000005656)	TRNT1 (ENSCLAG00000005186)	CRBN (ENSCLAG00000004930)	LRRN1 (ENSCLAG00000004896)	ENSCLAG00000005640	SUMF1 (ENSCLAG00000004509)	ITPR1 (ENSCLAG00000009445)	BHLHE40 (ENSCLAG00000003841)	ARL8B (ENSCLAG00000003184)	EDEM1 (ENSCLAG00000004922)	GRM7 (ENSCLAG00000004216)	ENSCLAG00000003666	SLC22A14 (ENSCLAG00000003320)	ENSCLAG00000003124 ##22	DLEC1 (ENSCLAG00000006229)	PLCD1 (ENSCLAG00000005079)	VILL (ENSCLAG00000005376)	CTDSPL (ENSCLAG00000004547)	ITGA9 (ENSCLAG00000004058)	GOLGA4 (ENSCLAG00000005913)	LRRFIP2 (ENSCLAG00000003180)	MLH1 (ENSCLAG00000004334)	EPM2AIP1 (ENSCLAG00000017557)	ENSCLAG00000004029	TRANK1 (ENSCLAG00000003643)	DCLK3 (ENSCLAG00000005385)	STAC (ENSCLAG00000005121)	ARPP21 (ENSCLAG00000007764)	ENSCLAG00000006281
Degu	MODERN SPECIES	112												GRM7 (ENSODEG00000004081)	ENSODEG00000004146	ENSODEG00000004195	SLC22A14 (ENSODEG00000004224)	ENSODEG00000004410 ##22	DLEC1 (ENSODEG00000004527)	PLCD1 (ENSODEG00000004716)	ENSODEG00000004890	CTDSPL (ENSODEG00000005636)	ITGA9 (ENSODEG00000005754)	GOLGA4 (ENSODEG00000005969)	ENSODEG00000019234	ENSODEG00000006044	MLH1 (ENSODEG00000006098)	EPM2AIP1 (ENSODEG00000019311)	TRANK1 (ENSODEG00000003882)	ENSODEG00000003967	DCLK3 (ENSODEG00000003986)	STAC (ENSODEG00000004015)	ENSODEG00000004051
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000039470	ENSHGLG00000002002	ENSHGLG00000001846	ENSHGLG00000002073	ENSHGLG00000050895	ENSHGLG00000044283	ENSHGLG00000042623	ENSHGLG00000046070	ENSHGLG00000040264	ENSHGLG00000002591	ENSHGLG00000032624	ENSHGLG00000041435	ENSHGLG00000007102	ENSHGLG00000008410	ENSHGLG00000009436	ENSHGLG00000010813 ##22	DLEC1 (ENSHGLG00000011950)	PLCD1 (ENSHGLG00000019434)	VILL (ENSHGLG00000034627)	ENSHGLG00000007859	ITGA9 (ENSHGLG00000008865)	ENSHGLG00000041383	ENSHGLG00000045409	ENSHGLG00000003324	MLH1 (ENSHGLG00000002978)	EPM2AIP1 (ENSHGLG00000038650)	TRANK1 (ENSHGLG00000002458)	DCLK3 (ENSHGLG00000002384)	ENSHGLG00000039711	STAC (ENSHGLG00000001907)	ENSHGLG00000001835
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT01030000234626.C.j ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT01030000234626.C.j ##22
Guinea pig	MODERN SPECIES	87	BRPF1 (ENSCPOG00000008771)	CPNE9 (ENSCPOG00000008755)	MTMR14 (ENSCPOG00000010330)	LHFPL4 (ENSCPOG00000038955)	SETD5 (ENSCPOG00000006520)	THUMPD3 (ENSCPOG00000033287)	SRGAP3 (ENSCPOG00000001996)	RAD18 (ENSCPOG00000013890)	OXTR (ENSCPOG00000037653)	CAV3 (ENSCPOG00000033048)	SSUH2 (ENSCPOG00000002444)	LMCD1 (ENSCPOG00000032663)	ENSCPOG00000006454	OXSR1 (ENSCPOG00000008891)	MYD88 (ENSCPOG00000024884)	ENSCPOG00000008881 ##22	XYLB (ENSCPOG00000004319)	ACVR2B (ENSCPOG00000009106)	EXOG (ENSCPOG00000038521)	SCN5A (ENSCPOG00000005240)	SCN10A (ENSCPOG00000013968)	SCN11A (ENSCPOG00000030301)	WDR48 (ENSCPOG00000010820)	GORASP1 (ENSCPOG00000030918)	TTC21A (ENSCPOG00000014079)	CSRNP1 (ENSCPOG00000030887)	ENSCPOG00000038030	CX3CR1 (ENSCPOG00000033203)	CCR8 (ENSCPOG00000011883)	SNX4 (ENSCPOG00000009282)	ENSCPOG00000038702
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139
Kangaroo rat	MODERN SPECIES	748																ENSDORG00000002580 ##22
Myomorpha	ANCESTRAL SPECIES	26	ENSGT00390000005979.a	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Lesser Egyptian jerboa	MODERN SPECIES	88	Ctnnb1 (ENSJJAG00000016038)	Rpl14 (ENSJJAG00000009606)	Entpd3 (ENSJJAG00000023007)	Eif1b (ENSJJAG00000020423)	ENSJJAG00000012927	ENSJJAG00000009647	Cx3cr1 (ENSJJAG00000001652)	ENSJJAG00000020823	Csrnp1 (ENSJJAG00000014486)	Ttc21a (ENSJJAG00000005140)	Gorasp1 (ENSJJAG00000018638)	Scn11a (ENSJJAG00000013430)	Acvr2b (ENSJJAG00000017686)	Xylb (ENSJJAG00000007351)	Slc22a14 (ENSJJAG00000006816)	ENSJJAG00000023930 ##22	Dlec1 (ENSJJAG00000022252)	Plcd1 (ENSJJAG00000011021)	Vill (ENSJJAG00000021111)	Ctdspl (ENSJJAG00000015226)	Itga9 (ENSJJAG00000000158)	ENSJJAG00000013352	ENSJJAG00000000566	ENSJJAG00000022018	Rbms3 (ENSJJAG00000014708)	ENSJJAG00000003144	Tgfbr2 (ENSJJAG00000009257)	Gadl1 (ENSJJAG00000023705)	Stt3b (ENSJJAG00000012543)	Osbpl10 (ENSJJAG00000018740)	Gpd1l (ENSJJAG00000010383)
Muroidea	ANCESTRAL SPECIES	27												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1332														ENSNGAG00000013355	Myd88 (ENSNGAG00000014215)	ENSNGAG00000016343 ##22	Xylb (ENSNGAG00000018281)	Acvr2b (ENSNGAG00000000198)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1724																ENSNGAG00000010655 ##22	Plcd1 (ENSNGAG00000020392)	ENSNGAG00000015672	Ctdspl (ENSNGAG00000016418)
Muroidea_A	ANCESTRAL SPECIES	6												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Murinae	ANCESTRAL SPECIES	3											ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Mus	DUPLICATION
Mus	ANCESTRAL SPECIES	4	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT01030000234626.C.n ##22	ENSGT00510000048324	ENSGT00940000162134	ENSGT00940000154607.b.a	ENSGT00940000162395	ENSGT01030000234626.C.m ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT01030000234626.C.n ##22	ENSGT00510000048324	ENSGT00940000162134	ENSGT00940000154607.b.a.g	ENSGT00940000162395	ENSGT01030000234626.C.m ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000008686.c	ENSGT00920000149157	ENSGT00940000161553	ENSGT01030000235508	ENSGT00940000154992.b	ENSGT00940000161691	ENSGT01030000235089.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT01030000234626.C.n ##22	ENSGT00510000048324	ENSGT00940000162134	ENSGT00940000154607.b.a.g	ENSGT00940000162395	ENSGT01030000234626.C.m ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Mouse	MODERN SPECIES	18	Gorasp1 (ENSMUSG00000032513)	Cx3cr1 (ENSMUSG00000052336)	Wdr48 (ENSMUSG00000032512)	Scn11a (ENSMUSG00000034115)	Scn10a (ENSMUSG00000034533)	Scn5a (ENSMUSG00000032511)	Exog (ENSMUSG00000042787)	Acvr2b (ENSMUSG00000061393)	Xylb (ENSMUSG00000035769)	Acaa1a (ENSMUSG00000036138) ##22	Myd88 (ENSMUSG00000032508)	Oxsr1 (ENSMUSG00000036737)	Slc22a13b (ENSMUSG00000092212)	Slc22a13 (ENSMUSG00000074028)	Slc22a14 (ENSMUSG00000070280)	Acaa1b (ENSMUSG00000010651) ##22	Dlec1 (ENSMUSG00000038060)	Plcd1 (ENSMUSG00000010660)	Vill (ENSMUSG00000038775)	Ctdspl (ENSMUSG00000047409)	Itga9 (ENSMUSG00000039115)	Golga4 (ENSMUSG00000038708)	Eomes (ENSMUSG00000032446)	Cmc1 (ENSMUSG00000039163)	Azi2 (ENSMUSG00000039285)	Zcwpw2 (ENSMUSG00000032443)	Rbms3 (ENSMUSG00000039607)	Tgfbr2 (ENSMUSG00000032440)	Gadl1 (ENSMUSG00000056880)	Stt3b (ENSMUSG00000032437)	Rps27rt (ENSMUSG00000050621)
Mus_C	ANCESTRAL SPECIES																	ENSGT01030000234626.C.m ##22
spretus	MODERN SPECIES	18	Gorasp1 (MGP_SPRETEiJ_G0033956)	Cx3cr1 (MGP_SPRETEiJ_G0033955)	Wdr48 (MGP_SPRETEiJ_G0033954)	Scn11a (MGP_SPRETEiJ_G0033953)	Scn10a (MGP_SPRETEiJ_G0033952)	Scn5a (MGP_SPRETEiJ_G0033951)	Exog (MGP_SPRETEiJ_G0033950)	Acvr2b (MGP_SPRETEiJ_G0033949)	Xylb (MGP_SPRETEiJ_G0033948)	MGP_SPRETEiJ_G0033947 ##22	Myd88 (MGP_SPRETEiJ_G0033946)	Oxsr1 (MGP_SPRETEiJ_G0033945)	MGP_SPRETEiJ_G0033944	Slc22a14 (MGP_SPRETEiJ_G0033943)	MGP_SPRETEiJ_G0033942	MGP_SPRETEiJ_G0033941 ##22	Dlec1 (MGP_SPRETEiJ_G0033940)	MGP_SPRETEiJ_G0033939	Vill (MGP_SPRETEiJ_G0033938)	Ctdspl (MGP_SPRETEiJ_G0033937)	Itga9 (MGP_SPRETEiJ_G0033936)	Golga4 (MGP_SPRETEiJ_G0033935)	Eomes (MGP_SPRETEiJ_G0033934)	Cmc1 (MGP_SPRETEiJ_G0033933)	Azi2 (MGP_SPRETEiJ_G0033932)	Rbms3 (MGP_SPRETEiJ_G0033930)	Tgfbr2 (MGP_SPRETEiJ_G0033929)	MGP_SPRETEiJ_G0033928	Stt3b (MGP_SPRETEiJ_G0033927)	Osbpl10 (MGP_SPRETEiJ_G0033926)	Gpd1l (MGP_SPRETEiJ_G0033925)
Ryukyu mouse	MODERN SPECIES	18	Gorasp1 (MGP_CAROLIEiJ_G0032808)	Cx3cr1 (MGP_CAROLIEiJ_G0032807)	Wdr48 (MGP_CAROLIEiJ_G0032806)	Scn11a (MGP_CAROLIEiJ_G0032805)	Scn10a (MGP_CAROLIEiJ_G0032804)	Scn5a (MGP_CAROLIEiJ_G0032803)	Exog (MGP_CAROLIEiJ_G0032802)	Acvr2b (MGP_CAROLIEiJ_G0032801)	Xylb (MGP_CAROLIEiJ_G0032800)	MGP_CAROLIEiJ_G0032799 ##22	Myd88 (MGP_CAROLIEiJ_G0032798)	Oxsr1 (MGP_CAROLIEiJ_G0032797)	MGP_CAROLIEiJ_G0008958	Slc22a13 (MGP_CAROLIEiJ_G0032796)	Slc22a14 (MGP_CAROLIEiJ_G0032795)	Acaa1b (MGP_CAROLIEiJ_G0032794) ##22	Dlec1 (MGP_CAROLIEiJ_G0032793)	Plcd1 (MGP_CAROLIEiJ_G0032792)	Vill (MGP_CAROLIEiJ_G0032791)	Ctdspl (MGP_CAROLIEiJ_G0032790)	Itga9 (MGP_CAROLIEiJ_G0032789)	Golga4 (MGP_CAROLIEiJ_G0032788)	Eomes (MGP_CAROLIEiJ_G0032787)	Cmc1 (MGP_CAROLIEiJ_G0032786)	Azi2 (MGP_CAROLIEiJ_G0032785)	Rbms3 (MGP_CAROLIEiJ_G0032783)	Tgfbr2 (MGP_CAROLIEiJ_G0032782)	Gadl1 (MGP_CAROLIEiJ_G0032781)	Stt3b (MGP_CAROLIEiJ_G0032780)	Osbpl10 (MGP_CAROLIEiJ_G0032779)	Gpd1l (MGP_CAROLIEiJ_G0032778)
Shrew mouse	MODERN SPECIES	1	Cx3cr1 (MGP_PahariEiJ_G0015674)	Wdr48 (MGP_PahariEiJ_G0015673)	Scn11a (MGP_PahariEiJ_G0015672)	Scn10a (MGP_PahariEiJ_G0015671)	Scn5a (MGP_PahariEiJ_G0015670)	Exog (MGP_PahariEiJ_G0015669)	Acvr2b (MGP_PahariEiJ_G0015668)	Xylb (MGP_PahariEiJ_G0015667)	MGP_PahariEiJ_G0015666 ##22	Myd88 (MGP_PahariEiJ_G0015665)	Oxsr1 (MGP_PahariEiJ_G0015664)	MGP_PahariEiJ_G0008411	MGP_PahariEiJ_G0015663	Slc22a14 (MGP_PahariEiJ_G0015662)	MGP_PahariEiJ_G0015661	MGP_PahariEiJ_G0015660 ##22	Dlec1 (MGP_PahariEiJ_G0015659)	Plcd1 (MGP_PahariEiJ_G0015658)	Vill (MGP_PahariEiJ_G0015657)	Ctdspl (MGP_PahariEiJ_G0015656)	Itga9 (MGP_PahariEiJ_G0015655)	Golga4 (MGP_PahariEiJ_G0015654)	Eomes (MGP_PahariEiJ_G0015653)	Cmc1 (MGP_PahariEiJ_G0015652)	Azi2 (MGP_PahariEiJ_G0015651)	MGP_PahariEiJ_G0015650	Tgfbr2 (MGP_PahariEiJ_G0015649)	Gadl1 (MGP_PahariEiJ_G0015648)	Stt3b (MGP_PahariEiJ_G0015647)	Osbpl10 (MGP_PahariEiJ_G0015646)	Gpd1l (MGP_PahariEiJ_G0015645)
Mus	ANCESTRAL SPECIES	4	ENSGT00560000077278.b	ENSGT00940000153704.A	ENSGT00390000018696	ENSGT00940000158728	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT01030000234626.C.m ##22	ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.n ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT01030000235089.b	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B
Mus_A	ANCESTRAL SPECIES	4	ENSGT00560000077278.b	ENSGT00940000153704.A	ENSGT00390000018696	ENSGT00940000158728	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT01030000234626.C.m ##22	ENSGT00940000162395	ENSGT00940000154607.b.a.g	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.n ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT01030000235089.b	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B
Ryukyu mouse	MODERN SPECIES	18	Azi2 (MGP_CAROLIEiJ_G0032785)	Cmc1 (MGP_CAROLIEiJ_G0032786)	Eomes (MGP_CAROLIEiJ_G0032787)	Golga4 (MGP_CAROLIEiJ_G0032788)	Itga9 (MGP_CAROLIEiJ_G0032789)	Ctdspl (MGP_CAROLIEiJ_G0032790)	Vill (MGP_CAROLIEiJ_G0032791)	Plcd1 (MGP_CAROLIEiJ_G0032792)	Dlec1 (MGP_CAROLIEiJ_G0032793)	Acaa1b (MGP_CAROLIEiJ_G0032794) ##22	Slc22a14 (MGP_CAROLIEiJ_G0032795)	Slc22a13 (MGP_CAROLIEiJ_G0032796)	MGP_CAROLIEiJ_G0008958	Oxsr1 (MGP_CAROLIEiJ_G0032797)	Myd88 (MGP_CAROLIEiJ_G0032798)	MGP_CAROLIEiJ_G0032799 ##22	Xylb (MGP_CAROLIEiJ_G0032800)	Acvr2b (MGP_CAROLIEiJ_G0032801)	Exog (MGP_CAROLIEiJ_G0032802)	Scn5a (MGP_CAROLIEiJ_G0032803)	Scn10a (MGP_CAROLIEiJ_G0032804)	Scn11a (MGP_CAROLIEiJ_G0032805)	Wdr48 (MGP_CAROLIEiJ_G0032806)	Cx3cr1 (MGP_CAROLIEiJ_G0032807)	Gorasp1 (MGP_CAROLIEiJ_G0032808)	Ttc21a (MGP_CAROLIEiJ_G0032809)	Csrnp1 (MGP_CAROLIEiJ_G0032810)	MGP_CAROLIEiJ_G0032811	Ccr8 (MGP_CAROLIEiJ_G0032812)	Slc25a38 (MGP_CAROLIEiJ_G0032813)	MGP_CAROLIEiJ_G0032814
Mus_B	ANCESTRAL SPECIES	3	ENSGT00560000077278.b	ENSGT00940000153704.A	ENSGT00390000018696	ENSGT00940000158728	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT01030000234626.C.m ##22	ENSGT00940000162395	ENSGT00940000154607.b.a.g	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.n ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT01030000235089.b	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B
Mouse	MODERN SPECIES	18	Azi2 (ENSMUSG00000039285)	Cmc1 (ENSMUSG00000039163)	Eomes (ENSMUSG00000032446)	Golga4 (ENSMUSG00000038708)	Itga9 (ENSMUSG00000039115)	Ctdspl (ENSMUSG00000047409)	Vill (ENSMUSG00000038775)	Plcd1 (ENSMUSG00000010660)	Dlec1 (ENSMUSG00000038060)	Acaa1b (ENSMUSG00000010651) ##22	Slc22a14 (ENSMUSG00000070280)	Slc22a13 (ENSMUSG00000074028)	Slc22a13b (ENSMUSG00000092212)	Oxsr1 (ENSMUSG00000036737)	Myd88 (ENSMUSG00000032508)	Acaa1a (ENSMUSG00000036138) ##22	Xylb (ENSMUSG00000035769)	Acvr2b (ENSMUSG00000061393)	Exog (ENSMUSG00000042787)	Scn5a (ENSMUSG00000032511)	Scn10a (ENSMUSG00000034533)	Scn11a (ENSMUSG00000034115)	Wdr48 (ENSMUSG00000032512)	Cx3cr1 (ENSMUSG00000052336)	Gorasp1 (ENSMUSG00000032513)	Ttc21a (ENSMUSG00000032514)	Csrnp1 (ENSMUSG00000032515)	Xirp1 (ENSMUSG00000079243)	Ccr8 (ENSMUSG00000042262)	Slc25a38 (ENSMUSG00000032519)	Rpsa (ENSMUSG00000032518)
Mus_C	ANCESTRAL SPECIES	23	ENSGT00940000157131.b	ENSGT00560000077278.b	ENSGT00940000153704.A	ENSGT00390000018696	ENSGT00940000158728	ENSGT00730000111139	ENSGT00940000156503	ENSGT01040000240451.a.b.b.d	ENSGT00940000160253	ENSGT00940000158392	ENSGT00390000006098	ENSGT00940000162395	ENSGT00940000154607.b.a.g	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C.n ##22	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT01030000235089.b	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT01020000230359.A	ENSGT01020000230359.B
Steppe mouse	MODERN SPECIES	3380	Cmc1 (ENSMSIG00000005679)	Eomes (ENSMSIG00000005631)	Golga4 (ENSMSIG00000005243)	ENSMSIG00000005208	Itga9 (ENSMSIG00000005091)	Ctdspl (ENSMSIG00000005025)	Vill (ENSMSIG00000004803)	Plcd1 (ENSMSIG00000004701)	Dlec1 (ENSMSIG00000004438)	ENSMSIG00000004415	ENSMSIG00000004409	Slc22a14 (ENSMSIG00000004351)	Slc22a13 (ENSMSIG00000004275)	Oxsr1 (ENSMSIG00000004125)	Myd88 (ENSMSIG00000004085)	ENSMSIG00000004022 ##22	Xylb (ENSMSIG00000003927)	Acvr2b (ENSMSIG00000003871)	Exog (ENSMSIG00000003811)	ENSMSIG00000003784	Scn5a (ENSMSIG00000003219)	Scn10a (ENSMSIG00000002952)	ENSMSIG00000002920	Scn11a (ENSMSIG00000002716)	Wdr48 (ENSMSIG00000002592)	Gorasp1 (ENSMSIG00000002538)	Ttc21a (ENSMSIG00000002395)	Csrnp1 (ENSMSIG00000002344)	ENSMSIG00000002327	Cx3cr1 (ENSMSIG00000002302)	Ccr8 (ENSMSIG00000002285)
spretus	MODERN SPECIES	18	Azi2 (MGP_SPRETEiJ_G0033932)	Cmc1 (MGP_SPRETEiJ_G0033933)	Eomes (MGP_SPRETEiJ_G0033934)	Golga4 (MGP_SPRETEiJ_G0033935)	Itga9 (MGP_SPRETEiJ_G0033936)	Ctdspl (MGP_SPRETEiJ_G0033937)	Vill (MGP_SPRETEiJ_G0033938)	MGP_SPRETEiJ_G0033939	Dlec1 (MGP_SPRETEiJ_G0033940)	MGP_SPRETEiJ_G0033941 ##22	MGP_SPRETEiJ_G0033942	Slc22a14 (MGP_SPRETEiJ_G0033943)	MGP_SPRETEiJ_G0033944	Oxsr1 (MGP_SPRETEiJ_G0033945)	Myd88 (MGP_SPRETEiJ_G0033946)	MGP_SPRETEiJ_G0033947 ##22	Xylb (MGP_SPRETEiJ_G0033948)	Acvr2b (MGP_SPRETEiJ_G0033949)	Exog (MGP_SPRETEiJ_G0033950)	Scn5a (MGP_SPRETEiJ_G0033951)	Scn10a (MGP_SPRETEiJ_G0033952)	Scn11a (MGP_SPRETEiJ_G0033953)	Wdr48 (MGP_SPRETEiJ_G0033954)	Cx3cr1 (MGP_SPRETEiJ_G0033955)	Gorasp1 (MGP_SPRETEiJ_G0033956)	Ttc21a (MGP_SPRETEiJ_G0033957)	Csrnp1 (MGP_SPRETEiJ_G0033958)	MGP_SPRETEiJ_G0033959	Ccr8 (MGP_SPRETEiJ_G0033960)	Slc25a38 (MGP_SPRETEiJ_G0033961)	Rpsa (MGP_SPRETEiJ_G0033962)
Shrew mouse	MODERN SPECIES	1	Cmc1 (MGP_PahariEiJ_G0015652)	Eomes (MGP_PahariEiJ_G0015653)	Golga4 (MGP_PahariEiJ_G0015654)	Itga9 (MGP_PahariEiJ_G0015655)	Ctdspl (MGP_PahariEiJ_G0015656)	Vill (MGP_PahariEiJ_G0015657)	Plcd1 (MGP_PahariEiJ_G0015658)	Dlec1 (MGP_PahariEiJ_G0015659)	MGP_PahariEiJ_G0015660 ##22	MGP_PahariEiJ_G0015661	Slc22a14 (MGP_PahariEiJ_G0015662)	MGP_PahariEiJ_G0015663	MGP_PahariEiJ_G0008411	Oxsr1 (MGP_PahariEiJ_G0015664)	Myd88 (MGP_PahariEiJ_G0015665)	MGP_PahariEiJ_G0015666 ##22	Xylb (MGP_PahariEiJ_G0015667)	Acvr2b (MGP_PahariEiJ_G0015668)	Exog (MGP_PahariEiJ_G0015669)	Scn5a (MGP_PahariEiJ_G0015670)	Scn10a (MGP_PahariEiJ_G0015671)	Scn11a (MGP_PahariEiJ_G0015672)	Wdr48 (MGP_PahariEiJ_G0015673)	Cx3cr1 (MGP_PahariEiJ_G0015674)	Gorasp1 (MGP_PahariEiJ_G0015675)	Ttc21a (MGP_PahariEiJ_G0015676)	Csrnp1 (MGP_PahariEiJ_G0015677)	MGP_PahariEiJ_G0015678	Ccr8 (MGP_PahariEiJ_G0015679)	Slc25a38 (MGP_PahariEiJ_G0015680)	MGP_PahariEiJ_G0015681
Rat	DUPLICATION
Rat	MODERN SPECIES	18	Ttc21a (ENSRNOG00000034089)	Gorasp1 (ENSRNOG00000018047)	Wdr48 (ENSRNOG00000016942)	Scn11a (ENSRNOG00000032884)	Scn10a (ENSRNOG00000032473)	Scn5a (ENSRNOG00000015049)	Exog (ENSRNOG00000014801)	Acvr2b (ENSRNOG00000014477)	Xylb (ENSRNOG00000014168)	Acaa1a (ENSRNOG00000032908) ##22	Myd88 (ENSRNOG00000013634)	Oxsr1 (ENSRNOG00000013136)	Slc22a13l1 (ENSRNOG00000042660)	Slc22a13 (ENSRNOG00000056476)	Slc22a14 (ENSRNOG00000042259)	Acaa1b (ENSRNOG00000067803) ##22	Dlec1 (ENSRNOG00000032085)	Plcd1 (ENSRNOG00000032238)	Vill (ENSRNOG00000011446)	Ctdspl (ENSRNOG00000046257)	Itga9 (ENSRNOG00000043167)	Eomes (ENSRNOG00000042140)	ENSRNOG00000068706	Cmc1 (ENSRNOG00000010149)	Azi2 (ENSRNOG00000010096)	Zcwpw2 (ENSRNOG00000053820)	Rbms3 (ENSRNOG00000025881)	Tgfbr2 (ENSRNOG00000013265)	Gadl1 (ENSRNOG00000067908)	ENSRNOG00000065164	Stt3b (ENSRNOG00000011922)
Rat	MODERN SPECIES	18	Azi2 (ENSRNOG00000010096)	Cmc1 (ENSRNOG00000010149)	ENSRNOG00000068706	Eomes (ENSRNOG00000042140)	Itga9 (ENSRNOG00000043167)	Ctdspl (ENSRNOG00000046257)	Vill (ENSRNOG00000011446)	Plcd1 (ENSRNOG00000032238)	Dlec1 (ENSRNOG00000032085)	Acaa1b (ENSRNOG00000067803) ##22	Slc22a14 (ENSRNOG00000042259)	Slc22a13 (ENSRNOG00000056476)	Slc22a13l1 (ENSRNOG00000042660)	Oxsr1 (ENSRNOG00000013136)	Myd88 (ENSRNOG00000013634)	Acaa1a (ENSRNOG00000032908) ##22	Xylb (ENSRNOG00000014168)	Acvr2b (ENSRNOG00000014477)	Exog (ENSRNOG00000014801)	Scn5a (ENSRNOG00000015049)	Scn10a (ENSRNOG00000032473)	Scn11a (ENSRNOG00000032884)	Wdr48 (ENSRNOG00000016942)	Gorasp1 (ENSRNOG00000018047)	Ttc21a (ENSRNOG00000034089)	Csrnp1 (ENSRNOG00000033433)	Xirp1 (ENSRNOG00000037085)	Cx3cr1 (ENSRNOG00000018509)	Ccr8 (ENSRNOG00000026759)	Slc25a38 (ENSRNOG00000018552)	ENSRNOG00000068525
Cricetidae	ANCESTRAL SPECIES	4												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Cricetinae	ANCESTRAL SPECIES	6												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880	ENSGT00390000003114.e.b.b.r
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	284	Azi2 (ENSCGRG00001016325)	Cmc1 (ENSCGRG00001008707)	Eomes (ENSCGRG00001020460)	ENSCGRG00001013738	Golga4 (ENSCGRG00001022030)	Itga9 (ENSCGRG00001013074)	Ctdspl (ENSCGRG00001000755)	Vill (ENSCGRG00001021693)	Plcd1 (ENSCGRG00001016251)	Dlec1 (ENSCGRG00001021926)	ENSCGRG00001016421 ##22	Slc22a14 (ENSCGRG00001020808)	ENSCGRG00001015332	ENSCGRG00001016037	Myd88 (ENSCGRG00001020561)	ENSCGRG00001023781 ##22	Xylb (ENSCGRG00001017291)	Acvr2b (ENSCGRG00001000835)	Exog (ENSCGRG00001016541)	Scn5a (ENSCGRG00001008045)	Scn10a (ENSCGRG00001022121)	Scn11a (ENSCGRG00001017254)	Wdr48 (ENSCGRG00001016747)	Gorasp1 (ENSCGRG00001009858)	Ttc21a (ENSCGRG00001020151)	Csrnp1 (ENSCGRG00001003977)	Xirp1 (ENSCGRG00001000077)	Cx3cr1 (ENSCGRG00001002880)	Ccr8 (ENSCGRG00001003503)	Slc25a38 (ENSCGRG00001010665)	Rpsa (ENSCGRG00001006680)
Chinese hamster chok1gshd	MODERN SPECIES	284	Csrnp1 (ENSCGRG00001003977)	Ttc21a (ENSCGRG00001020151)	Gorasp1 (ENSCGRG00001009858)	Wdr48 (ENSCGRG00001016747)	Scn11a (ENSCGRG00001017254)	Scn10a (ENSCGRG00001022121)	Scn5a (ENSCGRG00001008045)	Exog (ENSCGRG00001016541)	Acvr2b (ENSCGRG00001000835)	Xylb (ENSCGRG00001017291)	ENSCGRG00001023781 ##22	Myd88 (ENSCGRG00001020561)	ENSCGRG00001016037	ENSCGRG00001015332	Slc22a14 (ENSCGRG00001020808)	ENSCGRG00001016421 ##22	Dlec1 (ENSCGRG00001021926)	Plcd1 (ENSCGRG00001016251)	Vill (ENSCGRG00001021693)	Ctdspl (ENSCGRG00001000755)	Itga9 (ENSCGRG00001013074)	Golga4 (ENSCGRG00001022030)	ENSCGRG00001013738	Eomes (ENSCGRG00001020460)	Cmc1 (ENSCGRG00001008707)	Azi2 (ENSCGRG00001016325)	ENSCGRG00001004565	ENSCGRG00001006673	Rbms3 (ENSCGRG00001007243)	Tgfbr2 (ENSCGRG00001013267)	Gadl1 (ENSCGRG00001015920)
Golden Hamster	MODERN SPECIES	742			ENSMAUG00000007798	Azi2 (ENSMAUG00000021866)	Cmc1 (ENSMAUG00000022128)	Eomes (ENSMAUG00000010244)	Golga4 (ENSMAUG00000020186)	Itga9 (ENSMAUG00000013951)	Ctdspl (ENSMAUG00000014111)	Vill (ENSMAUG00000018980)	Plcd1 (ENSMAUG00000008577)	Slc22a14 (ENSMAUG00000016899)	ENSMAUG00000015848	Oxsr1 (ENSMAUG00000017746)	Myd88 (ENSMAUG00000010168)	ENSMAUG00000019971 ##22	Xylb (ENSMAUG00000021136)	Acvr2b (ENSMAUG00000020481)	Exog (ENSMAUG00000013540)	Scn5a (ENSMAUG00000015120)	Scn10a (ENSMAUG00000014414)	Scn11a (ENSMAUG00000007489)	Wdr48 (ENSMAUG00000017329)	Gorasp1 (ENSMAUG00000004125)	Ttc21a (ENSMAUG00000008403)	Csrnp1 (ENSMAUG00000003691)	Xirp1 (ENSMAUG00000015987)	Cx3cr1 (ENSMAUG00000008446)	ENSMAUG00000005362	Slc25a38 (ENSMAUG00000016265)	Rpsa (ENSMAUG00000018437)
Cricetidae_B	ANCESTRAL SPECIES	23												ENSGT00940000162395	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000156503	ENSGT00730000111139	ENSGT00940000158728	ENSGT00390000018696	ENSGT00940000153704.A	ENSGT00560000077278.b	ENSGT00940000157131.b	ENSGT00940000157527	ENSGT00940000158391	ENSGT00940000155488	ENSGT00940000157880
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	20				Golga4 (ENSPEMG00000020281)	Itga9 (ENSPEMG00000009918)	Ctdspl (ENSPEMG00000020111)	Vill (ENSPEMG00000009129)	Plcd1 (ENSPEMG00000012839)	Dlec1 (ENSPEMG00000019661)	ENSPEMG00000019825 ##22	Slc22a14 (ENSPEMG00000017193)	ENSPEMG00000018602	ENSPEMG00000010172	Oxsr1 (ENSPEMG00000011760)	Myd88 (ENSPEMG00000028847)	ENSPEMG00000019897 ##22	Xylb (ENSPEMG00000019632)	Acvr2b (ENSPEMG00000012381)	Exog (ENSPEMG00000019449)	ENSPEMG00000029689	Scn5a (ENSPEMG00000020279)	Scn10a (ENSPEMG00000020122)	Scn11a (ENSPEMG00000018380)	Wdr48 (ENSPEMG00000017529)	Gorasp1 (ENSPEMG00000017359)	Ttc21a (ENSPEMG00000010809)	Csrnp1 (ENSPEMG00000010839)	Xirp1 (ENSPEMG00000000423)	Cx3cr1 (ENSPEMG00000014105)	Ccr8 (ENSPEMG00000009173)	Slc25a38 (ENSPEMG00000013151)
Northern American deer mouse	MODERN SPECIES	20	Gorasp1 (ENSPEMG00000017359)	Wdr48 (ENSPEMG00000017529)	Scn11a (ENSPEMG00000018380)	Scn10a (ENSPEMG00000020122)	Scn5a (ENSPEMG00000020279)	ENSPEMG00000029689	Exog (ENSPEMG00000019449)	Acvr2b (ENSPEMG00000012381)	Xylb (ENSPEMG00000019632)	ENSPEMG00000019897 ##22	Myd88 (ENSPEMG00000028847)	Oxsr1 (ENSPEMG00000011760)	ENSPEMG00000010172	ENSPEMG00000018602	Slc22a14 (ENSPEMG00000017193)	ENSPEMG00000019825 ##22	Dlec1 (ENSPEMG00000019661)	Plcd1 (ENSPEMG00000012839)	Vill (ENSPEMG00000009129)	Ctdspl (ENSPEMG00000020111)	Itga9 (ENSPEMG00000009918)	Golga4 (ENSPEMG00000020281)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	13	Csrnp1 (ENSMOCG00000019828)	Ttc21a (ENSMOCG00000015037)	Gorasp1 (ENSMOCG00000015556)	Wdr48 (ENSMOCG00000004571)	Scn11a (ENSMOCG00000009302)	Scn10a (ENSMOCG00000000976)	Scn5a (ENSMOCG00000018512)	Exog (ENSMOCG00000020900)	Acvr2b (ENSMOCG00000019420)	Xylb (ENSMOCG00000006242)	ENSMOCG00000021760 ##22	Myd88 (ENSMOCG00000001673)	Oxsr1 (ENSMOCG00000017814)	ENSMOCG00000015259	Slc22a14 (ENSMOCG00000003432)	ENSMOCG00000005097 ##22	Dlec1 (ENSMOCG00000020565)	Plcd1 (ENSMOCG00000020441)	Vill (ENSMOCG00000013015)	Ctdspl (ENSMOCG00000012026)	Itga9 (ENSMOCG00000004653)	Golga4 (ENSMOCG00000022389)	ENSMOCG00000010349	Eomes (ENSMOCG00000020156)	Cmc1 (ENSMOCG00000020815)	Azi2 (ENSMOCG00000018171)	Rbms3 (ENSMOCG00000006997)	Tgfbr2 (ENSMOCG00000012279)	Gadl1 (ENSMOCG00000005000)	Stt3b (ENSMOCG00000021697)	Osbpl10 (ENSMOCG00000019718)
Prairie vole	MODERN SPECIES	13	Azi2 (ENSMOCG00000018171)	Cmc1 (ENSMOCG00000020815)	Eomes (ENSMOCG00000020156)	ENSMOCG00000010349	Golga4 (ENSMOCG00000022389)	Itga9 (ENSMOCG00000004653)	Ctdspl (ENSMOCG00000012026)	Vill (ENSMOCG00000013015)	Plcd1 (ENSMOCG00000020441)	Dlec1 (ENSMOCG00000020565)	ENSMOCG00000005097 ##22	Slc22a14 (ENSMOCG00000003432)	ENSMOCG00000015259	Oxsr1 (ENSMOCG00000017814)	Myd88 (ENSMOCG00000001673)	ENSMOCG00000021760 ##22	Xylb (ENSMOCG00000006242)	Acvr2b (ENSMOCG00000019420)	Exog (ENSMOCG00000020900)	Scn5a (ENSMOCG00000018512)	Scn10a (ENSMOCG00000000976)	Scn11a (ENSMOCG00000009302)	Wdr48 (ENSMOCG00000004571)	Gorasp1 (ENSMOCG00000015556)	Ttc21a (ENSMOCG00000015037)	Csrnp1 (ENSMOCG00000019828)	Xirp1 (ENSMOCG00000020560)	Cx3cr1 (ENSMOCG00000021085)	Ccr8 (ENSMOCG00000009909)	Slc25a38 (ENSMOCG00000010985)	Rpsa (ENSMOCG00000000679)
Lagomorpha	ANCESTRAL SPECIES	381														ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01030000234626.C ##22	ENSGT00390000006098.d
Pika	DUPLICATION
Pika	MODERN SPECIES	4862																ENSOPRG00000005673 ##22
Pika	MODERN SPECIES	377																ENSOPRG00000015079 ##22	ENSOPRG00000014986
Rabbit	MODERN SPECIES	850														ENSOCUG00000031471	ENSOCUG00000002417	ACAA1 (ENSOCUG00000002410) ##22	XYLB (ENSOCUG00000023112)
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Diprotodontia	ANCESTRAL SPECIES	61	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858.e	ENSGT00940000157362	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000155925	ENSGT00390000014722	ENSGT00550000074870.d.b	ENSGT00390000014996	ENSGT00940000158294	ENSGT00940000154014.a	ENSGT01030000234518.E.c.b	ENSGT01030000234518.E.c.a	ENSGT00940000155994.tb	ENSGT00390000008427	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00390000017671.a	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858.e	ENSGT00940000157362	ENSGT00550000074921	ENSGT00390000004860	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444
Common wonbat	MODERN SPECIES	1053	MRPL32 (ENSVURG00010013428)	HECW1 (ENSVURG00010013441)	STK17A (ENSVURG00010013459)	ENSVURG00010013470	ENSVURG00010013476	GPR141 (ENSVURG00010013484)	ELMO1 (ENSVURG00010013600)	AOAH (ENSVURG00010016348)	ANLN (ENSVURG00010016396)	ENSVURG00010016459	ENSVURG00010016467	EEPD1 (ENSVURG00010016475)	ENSVURG00010016485	ENSVURG00010016501	HERPUD2 (ENSVURG00010016508)	ACAA1 (ENSVURG00010016529) ##22	DLEC1 (ENSVURG00010016553)	PLCD1 (ENSVURG00010016702)	VILL (ENSVURG00010016741)	ENSVURG00010016760	GARS1 (ENSVURG00010016771)	CRHR2 (ENSVURG00010016791)	MINDY4 (ENSVURG00010016848)	AQP1 (ENSVURG00010016883)	GHRHR (ENSVURG00010016899)	ADCYAP1R1 (ENSVURG00010017084)	IARS1 (ENSVURG00010018053)	ENSVURG00010018075	OGN (ENSVURG00010018080)	OMD (ENSVURG00010018083)	ASPN (ENSVURG00010018088)
koala	MODERN SPECIES	152	PSMA2 (ENSPCIG00000008876)	MRPL32 (ENSPCIG00000008901)	HECW1 (ENSPCIG00000017097)	ENSPCIG00000034872	STK17A (ENSPCIG00000017095)	GPR141 (ENSPCIG00000015085)	ENSPCIG00000033160	ENSPCIG00000000677	AOAH (ENSPCIG00000025938)	ANLN (ENSPCIG00000025935)	MATCAP2 (ENSPCIG00000023542)	EEPD1 (ENSPCIG00000017032)	SEPTIN7 (ENSPCIG00000017026)	ENSPCIG00000017029	HERPUD2 (ENSPCIG00000009666)	ACAA1 (ENSPCIG00000005582) ##22	DLEC1 (ENSPCIG00000021260)	PLCD1 (ENSPCIG00000008009)	VILL (ENSPCIG00000007205)	ENSPCIG00000017017	GARS1 (ENSPCIG00000017010)	CRHR2 (ENSPCIG00000016999)	MINDY4 (ENSPCIG00000030698)	ENSPCIG00000018056	AQP1 (ENSPCIG00000018057)	ENSPCIG00000018058	ENSPCIG00000018059	ADCYAP1R1 (ENSPCIG00000023795)	IARS1 (ENSPCIG00000023807)	ENSPCIG00000010446	ENSPCIG00000037128
Wallaby	MODERN SPECIES	837																ACAA1 (ENSMEUG00000014495) ##22	ENSMEUG00000014439
Tasmanian devil	MODERN SPECIES		GLI3 (ENSSHAG00000009727)	C7orf25 (ENSSHAG00000027763)	PSMA2 (ENSSHAG00000005564)	ENSSHAG00000005433	HECW1 (ENSSHAG00000026205)	ENSSHAG00000031695	ENSSHAG00000001536	ENSSHAG00000022454	AOAH (ENSSHAG00000022160)	MATCAP2 (ENSSHAG00000003634)	ENSSHAG00000025832	ENSSHAG00000003788	ENSSHAG00000006029	ENSSHAG00000030865	ENSSHAG00000027246	ENSSHAG00000006345 ##22	ENSSHAG00000006856	PLCD1 (ENSSHAG00000007835)	ENSSHAG00000031894	ENSSHAG00000029835	ENSSHAG00000003419	CRHR2 (ENSSHAG00000000076)	MINDY4 (ENSSHAG00000000069)	AQP1 (ENSSHAG00000030108)	ENSSHAG00000028233	ENSSHAG00000032123	ENSSHAG00000000237	ENSSHAG00000028866	ENSSHAG00000029866	OGN (ENSSHAG00000020525)	OMD (ENSSHAG00000026198)
Opossum	MODERN SPECIES	5	FKBP9 (ENSMODG00000021555)	KBTBD2 (ENSMODG00000021551)	AVL9 (ENSMODG00000021550)	ENSMODG00000002605	CLASP2 (ENSMODG00000002548)	ENSMODG00000002472	ENSMODG00000038986	ARPP21 (ENSMODG00000002309)	ENSMODG00000002226	ENSMODG00000027724	ENSMODG00000021171	ANLN (ENSMODG00000021170)	MATCAP2 (ENSMODG00000021169)	ENSMODG00000021167	HERPUD2 (ENSMODG00000021166)	ACAA1 (ENSMODG00000021165) ##22	ENSMODG00000021163	ENSMODG00000021162	TTC21A (ENSMODG00000013468)	GORASP1 (ENSMODG00000013443)	WDR48 (ENSMODG00000013437)	SCN11A (ENSMODG00000013414)	SCN10A (ENSMODG00000013404)	ENSMODG00000046399	SCN5A (ENSMODG00000013384)	ENSMODG00000047681	ENSMODG00000049864	ENSMODG00000013356	MLH1 (ENSMODG00000013353)	ENSMODG00000013326	GOLGA4 (ENSMODG00000013315)
Platypus	MODERN SPECIES	4	ACVR2B (ENSOANG00000037493)	SCN5A (ENSOANG00000051243)	SCN10A (ENSOANG00000005021)	SCN11A (ENSOANG00000009843)	WDR48 (ENSOANG00000009844)	ENSOANG00000009845	TTC21A (ENSOANG00000009846)	ENSOANG00000009848	ENSOANG00000048090	ENSOANG00000043093	ENSOANG00000039467	ENSOANG00000000383	ENSOANG00000000384	MYD88 (ENSOANG00000001175)	ENSOANG00000006423	ACAA1 (ENSOANG00000043694) ##22	ENSOANG00000010795	PLCD1 (ENSOANG00000005661)	VILL (ENSOANG00000011776)	CTDSPL (ENSOANG00000015802)	GARS1 (ENSOANG00000006262)	CRHR2 (ENSOANG00000008095)	INMT (ENSOANG00000047781)	ADCYAP1R1 (ENSOANG00000006558)	ENSOANG00000043586	AQP1 (ENSOANG00000036888)	ENSOANG00000020679	SEC22C (ENSOANG00000036395)	ENSOANG00000040878	ENSOANG00000048058	ENSOANG00000008946
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338
Archosauria	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338
Aves	ANCESTRAL SPECIES	5	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00960000189325	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B
Neognathae	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT01030000235508	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926
Great tit	MODERN SPECIES	11	EXOG (ENSPMJG00000004805)	ENSPMJG00000004712	ENSPMJG00000004631	ENSPMJG00000004593	WDR48 (ENSPMJG00000004560)	GORASP1 (ENSPMJG00000004555)	CSRNP1 (ENSPMJG00000004549)	ENSPMJG00000004503	ENSPMJG00000004494	ENSPMJG00000004476	ENSPMJG00000004473	OXSR1 (ENSPMJG00000004463)	MYD88 (ENSPMJG00000004459)	ENSPMJG00000004453	ENSPMJG00000004438	ACAA1 (ENSPMJG00000004432) ##22	ENSPMJG00000004408	PLCD1 (ENSPMJG00000004398)	VILL (ENSPMJG00000004392)	CTDSPL (ENSPMJG00000004377)	GARS1 (ENSPMJG00000004364)	ENSPMJG00000004362	CRHR2 (ENSPMJG00000004356)	MINDY4 (ENSPMJG00000004345)	AQP1 (ENSPMJG00000004342)	GHRHR (ENSPMJG00000004336)	ADCYAP1R1 (ENSPMJG00000004324)	ENSPMJG00000004319	VIPR1 (ENSPMJG00000004302)	SEC22C (ENSPMJG00000004290)	NKTR (ENSPMJG00000004257)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.b	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926
Flycatcher	MODERN SPECIES	11	EXOG (ENSFALG00000006795)	ENSFALG00000006746	ENSFALG00000006706	ENSFALG00000024151	WDR48 (ENSFALG00000006692)	GORASP1 (ENSFALG00000023242)	CSRNP1 (ENSFALG00000006674)	ENSFALG00000025666	ENSFALG00000028804	ENSFALG00000006641	ENSFALG00000028828	OXSR1 (ENSFALG00000006624)	MYD88 (ENSFALG00000027821)	ENSFALG00000006612	ENSFALG00000006592	ACAA1 (ENSFALG00000006585) ##22	DLEC1 (ENSFALG00000006571)	PLCD1 (ENSFALG00000006558)	VILL (ENSFALG00000006554)	CTDSPL (ENSFALG00000023888)	GARS1 (ENSFALG00000006550)	CRHR2 (ENSFALG00000006519)	MINDY4 (ENSFALG00000000808)	AQP1 (ENSFALG00000000812)	GHRHR (ENSFALG00000000828)	ADCYAP1R1 (ENSFALG00000000871)	ENSFALG00000000919	VIPR1 (ENSFALG00000024420)	SEC22C (ENSFALG00000028342)	NKTR (ENSFALG00000000996)	ENSFALG00000001000
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000154992.b.a.a.a	ENSGT01100000266186	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000180074
Common canary	MODERN SPECIES	5	ACVR2B (ENSSCAG00000006784)	EXOG (ENSSCAG00000006776)	ENSSCAG00000006761	ENSSCAG00000006711	ENSSCAG00000006678	WDR48 (ENSSCAG00000006670)	GORASP1 (ENSSCAG00000006663)	CSRNP1 (ENSSCAG00000006655)	ENSSCAG00000006647	ENSSCAG00000006644	ENSSCAG00000006641	ENSSCAG00000006622	MYD88 (ENSSCAG00000006609)	ENSSCAG00000006602	ENSSCAG00000006592	ACAA1 (ENSSCAG00000006584) ##22	DLEC1 (ENSSCAG00000006553)	PLCD1 (ENSSCAG00000006539)	VILL (ENSSCAG00000006468)	CTDSPL (ENSSCAG00000006455)	GARS1 (ENSSCAG00000006444)	CRHR2 (ENSSCAG00000006439)	MINDY4 (ENSSCAG00000006424)	AQP1 (ENSSCAG00000006415)	GHRHR (ENSSCAG00000006246)	ADCYAP1R1 (ENSSCAG00000006221)	ENSSCAG00000006210	ENSSCAG00000006202	SEC22C (ENSSCAG00000006192)	NKTR (ENSSCAG00000006183)	ENSSCAG00000006177
Medium ground finch	MODERN SPECIES	70	EXOG (ENSGFOG00000004757)	ENSGFOG00000004604	ENSGFOG00000004410	ENSGFOG00000004382	ENSGFOG00000004371	WDR48 (ENSGFOG00000004132)	GORASP1 (ENSGFOG00000004098)	CSRNP1 (ENSGFOG00000004092)	ENSGFOG00000004086	ENSGFOG00000003967	ENSGFOG00000003497	ENSGFOG00000003348	MYD88 (ENSGFOG00000003311)	ENSGFOG00000003288	ENSGFOG00000003265	ACAA1 (ENSGFOG00000003242) ##22	DLEC1 (ENSGFOG00000003129)	PLCD1 (ENSGFOG00000002802)	VILL (ENSGFOG00000002436)	CTDSPL (ENSGFOG00000002293)	GARS1 (ENSGFOG00000001916)	CRHR2 (ENSGFOG00000001860)	MINDY4 (ENSGFOG00000001840)	AQP1 (ENSGFOG00000001839)	GHRHR (ENSGFOG00000001773)
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT01100000266186	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Kakapo	MODERN SPECIES		ACVR2B (ENSSHBG00005009789)	EXOG (ENSSHBG00005000032)	ENSSHBG00005000015	ENSSHBG00005004329	ENSSHBG00005004301	ENSSHBG00005004282	ENSSHBG00005004269	WDR48 (ENSSHBG00005004258)	GORASP1 (ENSSHBG00005004248)	CSRNP1 (ENSSHBG00005004234)	ENSSHBG00005004227	ENSSHBG00005004139	ENSSHBG00005004099	MYD88 (ENSSHBG00005004090)	ENSSHBG00005004077	ACAA1 (ENSSHBG00005004069) ##22	DLEC1 (ENSSHBG00005004061)	PLCD1 (ENSSHBG00005004046)	VILL (ENSSHBG00005004026)	CTDSPL (ENSSHBG00005004008)	GARS1 (ENSSHBG00005003985)	ENSSHBG00005003975	CRHR2 (ENSSHBG00005003961)	MINDY4 (ENSSHBG00005003948)	AQP1 (ENSSHBG00005003936)	GHRHR (ENSSHBG00005003880)	ENSSHBG00005003859	ADCYAP1R1 (ENSSHBG00005003844)	ENSSHBG00005003818	VIPR1 (ENSSHBG00005003800)	SEC22C (ENSSHBG00005003787)
Golden eagle	MODERN SPECIES	19	ENSACCG00020003340	ENSACCG00020003381	ENSACCG00020003412	ENSACCG00020003428	WDR48 (ENSACCG00020003453)	GORASP1 (ENSACCG00020003474)	ENSACCG00020003485	ENSACCG00020003508	CSRNP1 (ENSACCG00020003528)	XIRP1 (ENSACCG00020003537)	SLC22A13 (ENSACCG00020003547)	OXSR1 (ENSACCG00020003561)	MYD88 (ENSACCG00020003581)	ENSACCG00020003602	ENSACCG00020003619	ACAA1 (ENSACCG00020011457) ##22	DLEC1 (ENSACCG00020011507)	PLCD1 (ENSACCG00020011669)	ENSACCG00020011717	VILL (ENSACCG00020011741)	CTDSPL (ENSACCG00020011793)	GARS1 (ENSACCG00020011850)	ENSACCG00020012206	CRHR2 (ENSACCG00020012383)	MINDY4 (ENSACCG00020012449)	AQP1 (ENSACCG00020012492)	GHRHR (ENSACCG00020012555)	ADCYAP1R1 (ENSACCG00020012657)	ENSACCG00020012748	VIPR1 (ENSACCG00020012826)	SEC22C (ENSACCG00020012895)
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.c	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Pink-footed goose	MODERN SPECIES	35	ENSABRG00000020217	ENSABRG00000020460	SCN10A (ENSABRG00000020462)	WDR48 (ENSABRG00000020466)	GORASP1 (ENSABRG00000020469)	ENSABRG00000020470	CSRNP1 (ENSABRG00000020471)	ENSABRG00000020473	ENSABRG00000020475	SLC22A13 (ENSABRG00000020486)	ENSABRG00000020497	MYD88 (ENSABRG00000020511)	ENSABRG00000020518	ENSABRG00000020527	ENSABRG00000020536	ACAA1 (ENSABRG00000020545) ##22	DLEC1 (ENSABRG00000020559)	PLCD1 (ENSABRG00000020609)	VILL (ENSABRG00000020617)	CTDSPL (ENSABRG00000020621)	GARS1 (ENSABRG00000000299)	ENSABRG00000000641	CRHR2 (ENSABRG00000000646)	MINDY4 (ENSABRG00000000670)	AQP1 (ENSABRG00000000767)	GHRHR (ENSABRG00000000836)	ADCYAP1R1 (ENSABRG00000001449)	ENSABRG00000001544	VIPR1 (ENSABRG00000001593)	SEC22C (ENSABRG00000001638)	NKTR (ENSABRG00000001684)
Duck	MODERN SPECIES	10	XYLB (ENSAPLG00000012716)	ACVR2B (ENSAPLG00000012223)	EXOG (ENSAPLG00000012196)	ENSAPLG00000009692	ENSAPLG00000020958	ENSAPLG00000009789	ENSAPLG00000026377	WDR48 (ENSAPLG00000012688)	GORASP1 (ENSAPLG00000012693)	CSRNP1 (ENSAPLG00000001969)	ENSAPLG00000000980	ENSAPLG00000003878	MYD88 (ENSAPLG00000026818)	ENSAPLG00000005271	ENSAPLG00000005608	ACAA1 (ENSAPLG00000006202) ##22	DLEC1 (ENSAPLG00000006960)	PLCD1 (ENSAPLG00000007299)	VILL (ENSAPLG00000008184)	CTDSPL (ENSAPLG00000030602)	ENSAPLG00000026043	GARS1 (ENSAPLG00000015638)	ENSAPLG00000027330	CRHR2 (ENSAPLG00000011160)	MINDY4 (ENSAPLG00000011415)	AQP1 (ENSAPLG00000011792)	GHRHR (ENSAPLG00000011541)	ADCYAP1R1 (ENSAPLG00000009120)	ENSAPLG00000010054	SEC22C (ENSAPLG00000012311)	ZBTB47 (ENSAPLG00000022037)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT01070000257288	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000156795	ENSGT00940000154844.b.b.c	ENSGT00940000158053	ENSGT00390000016168.a	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00390000000410.ib	ENSGT00390000000410.jb
Japanese quail	MODERN SPECIES	11	EXOG (ENSCJPG00005010980)	ENSCJPG00005010974	ENSCJPG00005010973	ENSCJPG00005010971	ENSCJPG00005010965	WDR48 (ENSCJPG00005010964)	GORASP1 (ENSCJPG00005010963)	CSRNP1 (ENSCJPG00005010962)	ENSCJPG00005010954	ENSCJPG00005010953	ENSCJPG00005010952	ENSCJPG00005010951	OXSR1 (ENSCJPG00005010950)	MYD88 (ENSCJPG00005010949)	ENSCJPG00005010947	ACAA1 (ENSCJPG00005010946) ##22	DLEC1 (ENSCJPG00005010945)	PLCD1 (ENSCJPG00005010944)	ENSCJPG00005010943	VILL (ENSCJPG00005010942)	CTDSPL (ENSCJPG00005010940)	GARS1 (ENSCJPG00005010911)	ENSCJPG00005010734	ENSCJPG00005010732	CCM2 (ENSCJPG00005010647)	ENSCJPG00005010646	ENSCJPG00005010645	TBRG4 (ENSCJPG00005010641)	CATH1 (ENSCJPG00005010628)	ENSCJPG00005010627	CJ-CATH3 (ENSCJPG00005010622)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT01070000257288	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a	ENSGT00940000156795	ENSGT00940000154844.b.b.c	ENSGT00940000158053	ENSGT00390000016168.a	ENSGT00940000161501	ENSGT01030000234607.A.a.b.a	ENSGT00390000000410.ib	ENSGT01100000264253
Chicken	MODERN SPECIES	11	SCN5A (ENSGALG00010027095)	ENSGALG00010027094	ENSGALG00010026794	SCN11A (ENSGALG00010026737)	WDR48 (ENSGALG00010026715)	GORASP1 (ENSGALG00010026707)	CSRNP1 (ENSGALG00010026696)	XIRP1 (ENSGALG00010026630)	ENSGALG00010026666	ENSGALG00010026652	ENSGALG00010026601	OXSR1 (ENSGALG00010026584)	MYD88 (ENSGALG00010026550)	ENSGALG00010026539	ENSGALG00010026516	ACAA1 (ENSGALG00010026485) ##22	DLEC1 (ENSGALG00010026458)	PLCD1 (ENSGALG00010026436)	ENSGALG00010026425	VILL (ENSGALG00010026409)	CTDSPL (ENSGALG00010026360)	GARS1 (ENSGALG00010026268)	ENSGALG00010026254	CRHR2 (ENSGALG00010026229)	ENSGALG00010025415	MYO1G (ENSGALG00010025377)	CCM2 (ENSGALG00010025345)	ENSGALG00010025298	TBRG4 (ENSGALG00010025951)	CATH1 (ENSGALG00010025943)	CATHB1 (ENSGALG00010025947)
Turkey	MODERN SPECIES	26	HTR5A (ENSMGAG00000019111)	PAXIP1 (ENSMGAG00000004890)	DPP6 (ENSMGAG00000004869)	ENSMGAG00000004453	ENSMGAG00000004119	ENSMGAG00000019991	WDR48 (ENSMGAG00000003904)	GORASP1 (ENSMGAG00000003885)	CSRNP1 (ENSMGAG00000003865)	ENSMGAG00000020375	ENSMGAG00000003757	ENSMGAG00000003678	OXSR1 (ENSMGAG00000003580)	MYD88 (ENSMGAG00000003567)	ENSMGAG00000003515	ACAA1 (ENSMGAG00000003490) ##22	DLEC1 (ENSMGAG00000003424)	PLCD1 (ENSMGAG00000003387)	VILL (ENSMGAG00000003270)	ENSMGAG00000020738	CTDSPL (ENSMGAG00000003228)	ENSMGAG00000003162	ENSMGAG00000003149	ENSMGAG00000003120	ENSMGAG00000019435	MYO1G (ENSMGAG00000003048)	CCM2 (ENSMGAG00000003024)	ENSMGAG00000020305	TBRG4 (ENSMGAG00000002993)	ENSMGAG00000002989	ENSMGAG00000002975
African ostrich	MODERN SPECIES	974															ENSSCUG00000018033	ACAA1 (ENSSCUG00000018044) ##22	DLEC1 (ENSSCUG00000018051)	PLCD1 (ENSSCUG00000018062)	VILL (ENSSCUG00000018068)
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005004619	XYLB (ENSCPRG00005004595)	ACVR2B (ENSCPRG00005004570)	EXOG (ENSCPRG00005004567)	ENSCPRG00005004490	SCN10A (ENSCPRG00005004022)	WDR48 (ENSCPRG00005003964)	GORASP1 (ENSCPRG00005003956)	TTC21A (ENSCPRG00005003780)	ENSCPRG00005003764	CSRNP1 (ENSCPRG00005003763)	SLC22A13 (ENSCPRG00005003671)	OXSR1 (ENSCPRG00005003415)	MYD88 (ENSCPRG00005003358)	ENSCPRG00005003351	ACAA1 (ENSCPRG00005003330) ##22	DLEC1 (ENSCPRG00005003285)	ENSCPRG00005003275	PLCD1 (ENSCPRG00005003264)	VILL (ENSCPRG00005003212)	CTDSPL (ENSCPRG00005003172)	GARS1 (ENSCPRG00005003127)	ENSCPRG00005003126	ENSCPRG00005003125	ENSCPRG00005003076	ENSCPRG00005003021	CCM2 (ENSCPRG00005003010)	ENSCPRG00005003007	ENSCPRG00005003002	ENSCPRG00005002999	KLHL18 (ENSCPRG00005002997)
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT01100000263533.b.b.b.b.b.w.e.b	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a.h	ENSGT00390000005979.a.g	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.b	ENSGT00940000154607.b.a.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT01100000263533.b.b.b.b.b.w.e.b	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338.c
Emydidae	ANCESTRAL SPECIES	35	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a.h	ENSGT00390000005979.a.g	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.b	ENSGT00940000154607.b.a.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a.a	ENSGT01100000263533.b.b.b.b.b.w.e.b	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338.c
Three-toed box turtle	MODERN SPECIES	48	ENSTMTG00000014759	SCN10A (ENSTMTG00000011964)	WDR48 (ENSTMTG00000011686)	GORASP1 (ENSTMTG00000011663)	TTC21A (ENSTMTG00000011596)	ENSTMTG00000011509	CSRNP1 (ENSTMTG00000011498)	ENSTMTG00000011481	ENSTMTG00000011474	ENSTMTG00000011455	ENSTMTG00000011405	ENSTMTG00000011229	OXSR1 (ENSTMTG00000011179)	ENSTMTG00000011162	ENSTMTG00000011114	ACAA1 (ENSTMTG00000011065) ##22	DLEC1 (ENSTMTG00000010936)	PLCD1 (ENSTMTG00000010764)	VILL (ENSTMTG00000010154)	CTDSPL (ENSTMTG00000010066)	GARS1 (ENSTMTG00000009066)	ENSTMTG00000008970	ENSTMTG00000008964	CRHR2 (ENSTMTG00000008942)	MINDY4 (ENSTMTG00000008798)	ENSTMTG00000008774	ENSTMTG00000008764	GHRHR (ENSTMTG00000008727)	ADCYAP1R1 (ENSTMTG00000008568)	ENSTMTG00000008513	VIPR1 (ENSTMTG00000008453)
painted turtle	MODERN SPECIES	2396	GORASP1 (ENSCPBG00000018410)	ENSCPBG00000018411	ENSCPBG00000018417	ENSCPBG00000018426	CSRNP1 (ENSCPBG00000018430)	ENSCPBG00000018433	ENSCPBG00000018437	ENSCPBG00000018444	ENSCPBG00000018454	ENSCPBG00000018459	OXSR1 (ENSCPBG00000018467)	MYD88 (ENSCPBG00000018478)	ENSCPBG00000018481	ENSCPBG00000018484	ENSCPBG00000018489	ACAA1 (ENSCPBG00000018494) ##22	DLEC1 (ENSCPBG00000018504)	PLCD1 (ENSCPBG00000018523)	VILL (ENSCPBG00000018691)	CTDSPL (ENSCPBG00000019473)	GARS1 (ENSCPBG00000019482)	ENSCPBG00000019486	ENSCPBG00000019488	ENSCPBG00000019491	CRHR2 (ENSCPBG00000019500)
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a.h	ENSGT00950000183072.a	ENSGT00390000001653.l	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.b	ENSGT00940000154607.b.a.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263505.b.b.a.a.a.a.a	ENSGT00940000156207.a.b.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338.c
Abingdon island giant tortoise	MODERN SPECIES	1121	ENSCABG00000009547	CBFB (ENSCABG00000009544)	PHAF1 (ENSCABG00000009539)	B3GNT9 (ENSCABG00000009537)	TRADD (ENSCABG00000009535)	ENSCABG00000009532	HSF4 (ENSCABG00000009527)	ENSCABG00000009522	ENSCABG00000009519	MBTPS1 (ENSCABG00000009515)	SLC38A8 (ENSCABG00000009510)	ENSCABG00000009508	NECAB2 (ENSCABG00000009495)	OSGIN1 (ENSCABG00000009488)	ENSCABG00000009485	ACAA1 (ENSCABG00000009347) ##22	DLEC1 (ENSCABG00000009317)
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005018227	ENSGEVG00005017630	WDR48 (ENSGEVG00005017587)	GORASP1 (ENSGEVG00005017565)	TTC21A (ENSGEVG00005017465)	CSRNP1 (ENSGEVG00005017443)	ENSGEVG00005017414	ENSGEVG00005017403	ENSGEVG00005017305	ENSGEVG00005017188	OXSR1 (ENSGEVG00005017141)	MYD88 (ENSGEVG00005017107)	ENSGEVG00005017080	ENSGEVG00005017048	ENSGEVG00005017011	ACAA1 (ENSGEVG00005016981) ##22	ENSGEVG00005016903	PLCD1 (ENSGEVG00005016872)	VILL (ENSGEVG00005016427)	CTDSPL (ENSGEVG00005016319)	ENSGEVG00005016007	ENSGEVG00005015980	ENSGEVG00005015964	CRHR2 (ENSGEVG00005015878)	AQP1 (ENSGEVG00005015849)	GHRHR (ENSGEVG00005015776)	ADCYAP1R1 (ENSGEVG00005015612)	ENSGEVG00005015484	ENSGEVG00005015453	VIPR1 (ENSGEVG00005015274)	SEC22C (ENSGEVG00005015191)
Chinese turtle	MODERN SPECIES	878	ENSPSIG00000009113	ENSPSIG00000009308	ENSPSIG00000009316	ENSPSIG00000010955	ENSPSIG00000013903	WDR48 (ENSPSIG00000004103)	GORASP1 (ENSPSIG00000004490)	TTC21A (ENSPSIG00000004609)	ENSPSIG00000005642	XIRP1 (ENSPSIG00000006262)	ENSPSIG00000000743	ENSPSIG00000006561	MYD88 (ENSPSIG00000008175)	ENSPSIG00000008379	ENSPSIG00000008546	ACAA1 (ENSPSIG00000010862) ##22	DLEC1 (ENSPSIG00000012059)	PLCD1 (ENSPSIG00000006467)	VILL (ENSPSIG00000008538)	CTDSPL (ENSPSIG00000010586)	GARS1 (ENSPSIG00000010935)	ENSPSIG00000000760	ENSPSIG00000000780	CRHR2 (ENSPSIG00000013384)	MINDY4 (ENSPSIG00000013944)	AQP1 (ENSPSIG00000014446)	GHRHR (ENSPSIG00000015037)	ADCYAP1R1 (ENSPSIG00000015049)	ENSPSIG00000016230	VIPR1 (ENSPSIG00000017121)	SEC22C (ENSPSIG00000017831)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Episquamata	ANCESTRAL SPECIES	5	ENSGT01030000235508.a	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000161688	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000154992.b.a.b	ENSGT01030000235508.a	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00950000183580	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000160089
Argentine black and white tegu	MODERN SPECIES	5	EXOG (ENSSMRG00000014435)	ENSSMRG00000014437	ENSSMRG00000014441	SCN10A (ENSSMRG00000014452)	WDR48 (ENSSMRG00000015091)	GORASP1 (ENSSMRG00000015092)	TTC21A (ENSSMRG00000015093)	CSRNP1 (ENSSMRG00000015094)	ENSSMRG00000015097	ENSSMRG00000015098	ENSSMRG00000015245	ENSSMRG00000015250	MYD88 (ENSSMRG00000015253)	ENSSMRG00000015254	ENSSMRG00000015256	ACAA1 (ENSSMRG00000015260) ##22	DLEC1 (ENSSMRG00000015262)	ENSSMRG00000015267	PLCD1 (ENSSMRG00000015269)	VILL (ENSSMRG00000015276)	CTDSPL (ENSSMRG00000016657)	GARS1 (ENSSMRG00000016662)	ENSSMRG00000016789	ENSSMRG00000016792	TSPAN13 (ENSSMRG00000016796)	MINDY4 (ENSSMRG00000016800)	AQP1 (ENSSMRG00000016805)	GHRHR (ENSSMRG00000016806)	ENSSMRG00000016814	ADCYAP1R1 (ENSSMRG00000016818)	ENSSMRG00000016822
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000011611	ENSPMRG00000011545	ENSPMRG00000011538	ENSPMRG00000011528	WDR48 (ENSPMRG00000011509)	ENSPMRG00000011500	GORASP1 (ENSPMRG00000011490)	TTC21A (ENSPMRG00000010937)	CSRNP1 (ENSPMRG00000010815)	ENSPMRG00000010795	SLC22A13 (ENSPMRG00000010786)	ENSPMRG00000010767	MYD88 (ENSPMRG00000010760)	ENSPMRG00000010752	ENSPMRG00000010738	ACAA1 (ENSPMRG00000010729) ##22	ENSPMRG00000010721	PLCD1 (ENSPMRG00000010710)	VILL (ENSPMRG00000010654)	CTDSPL (ENSPMRG00000010623)	GARS1 (ENSPMRG00000010601)	ENSPMRG00000010590	CRHR2 (ENSPMRG00000010236)	ENSPMRG00000010176	AQP1 (ENSPMRG00000010167)	GHRHR (ENSPMRG00000010157)	ADCYAP1R1 (ENSPMRG00000010148)	ENSPMRG00000010142	ENSPMRG00000017897	VIPR1 (ENSPMRG00000017889)	SEC22C (ENSPMRG00000017882)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000161688.h.b	ENSGT00940000156795	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000166678	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Elapidae	ANCESTRAL SPECIES	24	ENSGT00940000154992.b.a.b.g	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a.a	ENSGT00940000161688.h.b	ENSGT00940000156795	ENSGT00940000157015	ENSGT00940000159858	ENSGT00940000157362	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000160089
Elapidae_a	ANCESTRAL SPECIES	92	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157.a	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a.a	ENSGT00940000156795
Acanthophiinae	ANCESTRAL SPECIES	86	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157.a	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a.a	ENSGT00940000156795
Mainland tiger snake	MODERN SPECIES	109	EXOG (ENSNSUG00000012204)	ENSNSUG00000012203	ENSNSUG00000012202	SCN10A (ENSNSUG00000012201)	ENSNSUG00000011586	GORASP1 (ENSNSUG00000011581)	TTC21A (ENSNSUG00000011570)	CSRNP1 (ENSNSUG00000011557)	XIRP1 (ENSNSUG00000011552)	ENSNSUG00000011546	ENSNSUG00000011544	ENSNSUG00000011543	ENSNSUG00000011542	MYD88 (ENSNSUG00000011505)	ENSNSUG00000011504	ACAA1 (ENSNSUG00000011502) ##22	DLEC1 (ENSNSUG00000011494)	PLCD1 (ENSNSUG00000011492)	ENSNSUG00000011491	ENSNSUG00000011488	ENSNSUG00000011487	ENSNSUG00000011478	CTDSPL (ENSNSUG00000011475)
Eastern brown snake	MODERN SPECIES	108	EXOG (ENSPTXG00000018872)	ENSPTXG00000018873	ENSPTXG00000018874	ENSPTXG00000018881	ENSPTXG00000018883	ENSPTXG00000018884	GORASP1 (ENSPTXG00000018885)	TTC21A (ENSPTXG00000018887)	CSRNP1 (ENSPTXG00000018888)	ENSPTXG00000018889	ENSPTXG00000018891	ENSPTXG00000018901	OXSR1 (ENSPTXG00000018903)	MYD88 (ENSPTXG00000018905)	ENSPTXG00000018906	ACAA1 (ENSPTXG00000018908) ##22	DLEC1 (ENSPTXG00000018911)	PLCD1 (ENSPTXG00000018915)	VILL (ENSPTXG00000018918)	CTDSPL (ENSPTXG00000018920)	ENSPTXG00000018922	CRHR2 (ENSPTXG00000018923)
Blue-lipped sea krait	MODERN SPECIES	8882															ENSLLTG00000005828	ACAA1 (ENSLLTG00000005847) ##22
Indian cobra	MODERN SPECIES	337	XYLB (ENSNNAG00000013018)	ACVR2B (ENSNNAG00000012901)	EXOG (ENSNNAG00000012754)	SCN10A (ENSNNAG00000012641)	ENSNNAG00000012612	GORASP1 (ENSNNAG00000012571)	TTC21A (ENSNNAG00000011695)	CSRNP1 (ENSNNAG00000011579)	ENSNNAG00000011552	ENSNNAG00000011349	ENSNNAG00000011306	ENSNNAG00000011246	MYD88 (ENSNNAG00000011071)	ENSNNAG00000011056	ENSNNAG00000011037	ACAA1 (ENSNNAG00000011019) ##22	ENSNNAG00000010996	DLEC1 (ENSNNAG00000010698)	VILL (ENSNNAG00000010300)	CTDSPL (ENSNNAG00000010153)	ENSNNAG00000010092	ENSNNAG00000010072	ENSNNAG00000010038	ENSNNAG00000010020	ENSNNAG00000010002	ADCYAP1R1 (ENSNNAG00000009822)	ENSNNAG00000009782	NKTR (ENSNNAG00000009715)	ZBTB47 (ENSNNAG00000009670)	KLHL40 (ENSNNAG00000009511)	CCDC13 (ENSNNAG00000009418)
Lizard	MODERN SPECIES	5	SCN10A (ENSACAG00000009381)	ENSACAG00000039891	WDR48 (ENSACAG00000009416)	GORASP1 (ENSACAG00000009518)	TTC21A (ENSACAG00000009574)	CSRNP1 (ENSACAG00000009756)	ENSACAG00000009771	ENSACAG00000042672	ENSACAG00000009777	ENSACAG00000024540	OXSR1 (ENSACAG00000009859)	ENSACAG00000037475	MYD88 (ENSACAG00000009971)	ENSACAG00000028395	ENSACAG00000005120	ACAA1 (ENSACAG00000005137) ##22	ENSACAG00000034923	DLEC1 (ENSACAG00000005201)	PLCD1 (ENSACAG00000005221)	VILL (ENSACAG00000005301)	CTDSPL (ENSACAG00000005539)	ENSACAG00000009156	ENSACAG00000005591	GARS1 (ENSACAG00000005601)	CRHR2 (ENSACAG00000005741)	ENSACAG00000042056	ENSACAG00000042715	MINDY4 (ENSACAG00000005775)	ENSACAG00000005808	GHRHR (ENSACAG00000005849)	ENSACAG00000042375
tuatara	MODERN SPECIES	2								ENSSPUG00000000123	CSRNP1 (ENSSPUG00000000139)	ENSSPUG00000000148	ENSSPUG00000000185	ENSSPUG00000000274	MYD88 (ENSSPUG00000000424)	ENSSPUG00000000435	ENSSPUG00000000553	ACAA1 (ENSSPUG00000000571) ##22	TTC21A (ENSSPUG00000000583)	GORASP1 (ENSSPUG00000000668)	WDR48 (ENSSPUG00000000674)	ENSSPUG00000000711
Anura	ANCESTRAL SPECIES	11	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000154384	ENSGT00940000164027	ENSGT00390000005972	ENSGT00940000159600	ENSGT00940000157015	ENSGT00940000157362	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548
Frog	MODERN SPECIES	6	elp6 (ENSXETG00000013936)	bcas2 (ENSXETG00000044049)	ndufb10 (ENSXETG00000020351)	cspg5 (ENSXETG00000039472)	ENSXETG00000047431	ENSXETG00000044203	ENSXETG00000047526	smarcc1 (ENSXETG00000014492)	ENSXETG00000032104	ENSXETG00000044782	slc22a13 (ENSXETG00000014497)	gal3st4.3 (ENSXETG00000014499)	myd88 (ENSXETG00000018434)	cry-dash (ENSXETG00000040646)	map3k22 (ENSXETG00000018442)	acaa1 (ENSXETG00000018446) ##22	dlec1 (ENSXETG00000018451)	plcd1 (ENSXETG00000018458)	vill (ENSXETG00000018470)	ctdspl (ENSXETG00000046735)	gars1 (ENSXETG00000018474)	crhr2 (ENSXETG00000018502)	ENSXETG00000042539	pomp (ENSXETG00000026990)	dnajc19 (ENSXETG00000041484)	selenon (ENSXETG00000010686)	mindy4 (ENSXETG00000010688)	aqp1 (ENSXETG00000045962)	ENSXETG00000045728	ENSXETG00000042382	adcyap1r1 (ENSXETG00000010690)
Leishan spiny toad	MODERN SPECIES	8	SCN10A (ENSLLEG00000016629)	ENSLLEG00000017697	ENSLLEG00000017732	WDR48 (ENSLLEG00000017877)	GORASP1 (ENSLLEG00000019093)	TTC21A (ENSLLEG00000019215)	CSRNP1 (ENSLLEG00000020050)	ENSLLEG00000020144	ENSLLEG00000020269	ENSLLEG00000020294	SLC22A13 (ENSLLEG00000020330)	ENSLLEG00000020659	MYD88 (ENSLLEG00000023904)	ENSLLEG00000023967	ENSLLEG00000024110	ACAA1 (ENSLLEG00000024271) ##22	DLEC1 (ENSLLEG00000024536)	PLCD1 (ENSLLEG00000025076)	VILL (ENSLLEG00000025543)	ENSLLEG00000026544	ENSLLEG00000026566	ENSLLEG00000026622	ENSLLEG00000026648	CRHR2 (ENSLLEG00000026826)	ENSLLEG00000027068	ENSLLEG00000027091	ENSLLEG00000027145	ENSLLEG00000027158	DNAJC19 (ENSLLEG00000027169)	ENSLLEG00000027225	ENSLLEG00000027237
Coelacanth	MODERN SPECIES	422													MYD88 (ENSLACG00000016801)	ENSLACG00000016629	ENSLACG00000016123	ACAA1 (ENSLACG00000015961) ##22	DLEC1 (ENSLACG00000015612)	ENSLACG00000015302	ENSLACG00000014132	ENSLACG00000013653	ENSLACG00000013263	ENSLACG00000011661	FASTK (ENSLACG00000010865)	TMUB1 (ENSLACG00000009482)	ENSLACG00000008676	AGAP3 (ENSLACG00000003310)	ENSLACG00000001101
Actinopterygii	ANCESTRAL SPECIES	24	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B	ENSGT00940000158377.b	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT01040000240451.a.b.b.a.a	ENSGT01040000240451.a.b.b.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B
Neopterygii	ANCESTRAL SPECIES	32	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a	ENSGT00530000063779.B.a	ENSGT00940000158377.b	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT01040000240451.a.b.b.a.a	ENSGT01040000240451.a.b.b.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b	ENSGT00940000156360	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B
Spotted gar	MODERN SPECIES	675	acvr2ba (ENSLOCG00000009939)	EXOG (ENSLOCG00000009933)	scn12aa (ENSLOCG00000009914)	wdr48b (ENSLOCG00000009906)	gorasp1a (ENSLOCG00000009900)	TTC21A (ENSLOCG00000009893)	ENSLOCG00000009870	csrnp1b (ENSLOCG00000009861)	xirp1 (ENSLOCG00000009850)	ENSLOCG00000009841	slc22a13b (ENSLOCG00000009828)	oxsr1a (ENSLOCG00000009820)	myd88 (ENSLOCG00000009811)	cry-dash (ENSLOCG00000009796)	map3k22 (ENSLOCG00000009780)	acaa1 (ENSLOCG00000009768) ##22	DLEC1 (ENSLOCG00000009757)	ENSLOCG00000009753	plcd1a (ENSLOCG00000009737)	VILL (ENSLOCG00000009718)	ctdsplb (ENSLOCG00000009706)	gars1 (ENSLOCG00000009688)	hhatlb (ENSLOCG00000009668)	klhl40b (ENSLOCG00000009659)	ENSLOCG00000009647	NKTR (ENSLOCG00000009632)	SEC22C (ENSLOCG00000009619)	vipr1b (ENSLOCG00000009610)	ENSLOCG00000009604	ENSLOCG00000009570	adcyap1r1a (ENSLOCG00000009545)
Osteoglossocephalai	ANCESTRAL SPECIES	214	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00940000165167	ENSGT00940000154621.a.b.a	ENSGT00510000048324	ENSGT00940000164858	ENSGT01030000234626.C ##22
Osteoglossiformes	ANCESTRAL SPECIES	77										ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.b	ENSGT00530000063629.b.c.c	ENSGT00940000156360.c	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000155240.B.b	ENSGT00940000157476	ENSGT00940000156508	ENSGT00940000156678	ENSGT00940000157711
P. kingsleyae	MODERN SPECIES	62										CSRNP1 (ENSPKIG00000011992)	ENSPKIG00000011973	slc22a13b (ENSPKIG00000011916)	oxsr1b (ENSPKIG00000011816)	myd88 (ENSPKIG00000011777)	map3k22 (ENSPKIG00000011738)	acaa1 (ENSPKIG00000011666) ##22	DLEC1 (ENSPKIG00000011528)	ENSPKIG00000011487	plcd1a (ENSPKIG00000011437)	VILL (ENSPKIG00000011354)	CTDSPL (ENSPKIG00000011316)	hhatlb (ENSPKIG00000011287)	klhl40b (ENSPKIG00000011265)	NKTR (ENSPKIG00000011161)	SEC22C (ENSPKIG00000011092)	gprc5ba (ENSPKIG00000011064)	vipr1b (ENSPKIG00000011016)	ENSPKIG00000010972	ARMC3 (ENSPKIG00000010944)	PIP4K2A (ENSPKIG00000010910)	spag6 (ENSPKIG00000010880)
Asian bonytongue	MODERN SPECIES	22	si:ch211-106n13.3 (ENSSFOG00015013012)	ENSSFOG00015027228	TMEM241 (ENSSFOG00015012968)	riok3 (ENSSFOG00015012912)	rmc1 (ENSSFOG00015012823)	cavin4b (ENSSFOG00015024867)	ENSSFOG00015032654	NKTR (ENSSFOG00015012767)	klhl40b (ENSSFOG00015012746)	VILL (ENSSFOG00015012719)	plcd1a (ENSSFOG00015012682)	DLEC1 (ENSSFOG00015012553)	slc22a13b (ENSSFOG00015012525)	cry-dash (ENSSFOG00015012487)	myd88 (ENSSFOG00015012458)	acaa1 (ENSSFOG00015012404) ##22
Clupeocephala	ANCESTRAL SPECIES	151	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00920000149157.d	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628
Otomorpha	ANCESTRAL SPECIES	3								ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00390000011053
Otophysi	ANCESTRAL SPECIES	42	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000154826
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00900000141099	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000180074	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000154826
Channel catfish	MODERN SPECIES	15	kiaa1468 (ENSIPUG00000013151)	CSPP1 (ENSIPUG00000013098)	arfgef1 (ENSIPUG00000012943)	cpa6 (ENSIPUG00000012896)	PREX2 (ENSIPUG00000012653)	c23h8orf34 (ENSIPUG00000012603)	sulf1 (ENSIPUG00000012470)	SLCO5A1 (ENSIPUG00000012436)	csrnp1b (ENSIPUG00000012422)	ENSIPUG00000012410	ENSIPUG00000012384	slc22a13 (ENSIPUG00000012346)	oxsr1 (ENSIPUG00000012254)	myd88 (ENSIPUG00000012161)	map3k22 (ENSIPUG00000012014)	acaa1 (ENSIPUG00000011849) ##22	dlec1 (ENSIPUG00000011740)	plcd1 (ENSIPUG00000011662)	vill (ENSIPUG00000011624)	ctdspl (ENSIPUG00000011551)	spag6 (ENSIPUG00000011491)	gars1 (ENSIPUG00000011443)	hhatlb (ENSIPUG00000011428)	klhl40b (ENSIPUG00000011417)	ZBTB47 (ENSIPUG00000011399)	nktr (ENSIPUG00000011326)	SEC22C (ENSIPUG00000011300)	vipr1b (ENSIPUG00000011233)	ENSIPUG00000011207	ENSIPUG00000011199	ENSIPUG00000011182
Characiphysae_b	ANCESTRAL SPECIES	52	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00900000141099	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000180074.b	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000154826
Characoidei	ANCESTRAL SPECIES	14	ENSGT00390000015084.c.a	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.q	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00900000141099	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000154826	ENSGT00390000011053
Red-bellied piranha	MODERN SPECIES	8	CSPP1 (ENSPNAG00000018733)	ARFGEF1 (ENSPNAG00000019034)	CPA6 (ENSPNAG00000019071)	PREX2 (ENSPNAG00000019161)	zgc:162928 (ENSPNAG00000019179)	sulf1 (ENSPNAG00000019431)	SLCO5A1 (ENSPNAG00000019460)	csrnp1b (ENSPNAG00000019477)	ENSPNAG00000019490	LIMD2 (ENSPNAG00000019502)	slc22a13b (ENSPNAG00000019510)	oxsr1b (ENSPNAG00000019531)	myd88 (ENSPNAG00000019544)	cry-dash (ENSPNAG00000019588)	map3k22 (ENSPNAG00000019613)	acaa1 (ENSPNAG00000019666) ##22	DLEC1 (ENSPNAG00000019824)	plcd1a (ENSPNAG00000019852)	VILL (ENSPNAG00000019905)	ctdspla (ENSPNAG00000020024)	spag6 (ENSPNAG00000020106)	gars1 (ENSPNAG00000020164)	hhatlb (ENSPNAG00000020184)	klhl40b (ENSPNAG00000020191)	ZBTB47 (ENSPNAG00000020208)	NKTR (ENSPNAG00000020227)	SEC22C (ENSPNAG00000020231)	vipr1b (ENSPNAG00000020310)	ENSPNAG00000020338	cst14a.1 (ENSPNAG00000020359)	mix23 (ENSPNAG00000020380)
Mexicana tetra	MODERN SPECIES	18	KIF3C (ENSAMXG00000035039)	dtnba (ENSAMXG00000001714)	dnmt3aa (ENSAMXG00000001678)	GNPAT (ENSAMXG00000001670)	LPIN1 (ENSAMXG00000032749)	si:ch73-21k16.4 (ENSAMXG00000001662)	esrrgb (ENSAMXG00000001660)	csrnp1b (ENSAMXG00000034148)	LIMD2 (ENSAMXG00000002170)	slc22a13b (ENSAMXG00000002238)	oxsr1b (ENSAMXG00000002341)	ENSAMXG00000030738	myd88 (ENSAMXG00000033434)	cry-dash (ENSAMXG00000002370)	map3k22 (ENSAMXG00000018527)	acaa1 (ENSAMXG00000002390) ##22	DLEC1 (ENSAMXG00000002508)	plcd1a (ENSAMXG00000002736)	VILL (ENSAMXG00000002877)	ENSAMXG00000041320	tssk6 (ENSAMXG00000032560)	ENSAMXG00000032327	ctdspla (ENSAMXG00000037932)	spag6 (ENSAMXG00000014898)	gars1 (ENSAMXG00000014895)	hhatlb (ENSAMXG00000014877)	klhl40b (ENSAMXG00000014873)	ZBTB47 (ENSAMXG00000014869)	NKTR (ENSAMXG00000014865)	SEC22C (ENSAMXG00000031018)	vipr1b (ENSAMXG00000014845)
Electric eel	MODERN SPECIES	255			GRAMD1C (ENSEEEG00000020972)	zdhhc23b (ENSEEEG00000020971)	ccdc191 (ENSEEEG00000020969)	qtrt2 (ENSEEEG00000020966)	drd3 (ENSEEEG00000020964)	ENSEEEG00000020963	KPNA1 (ENSEEEG00000019780)	fam162a (ENSEEEG00000019770)	mix23 (ENSEEEG00000019769)	cst14a.1 (ENSEEEG00000019768)	ENSEEEG00000019766	vipr1b (ENSEEEG00000019761)	map3k22 (ENSEEEG00000019760)	acaa1 (ENSEEEG00000019754) ##22	ENSEEEG00000019747	plcd1a (ENSEEEG00000019734)	VILL (ENSEEEG00000019572)	ctdspla (ENSEEEG00000019558)	spag6 (ENSEEEG00000019557)	gars1 (ENSEEEG00000019534)	hhatlb (ENSEEEG00000019533)	klhl40b (ENSEEEG00000019532)	ZBTB47 (ENSEEEG00000019531)	ENSEEEG00000019530	NKTR (ENSEEEG00000019513)	SEC22C (ENSEEEG00000019511)	ENSEEEG00000019510	asic2 (ENSEEEG00000019508)	brd7 (ENSEEEG00000019507)
Cyprinoidei	ANCESTRAL SPECIES	20	ENSGT00940000157108	ENSGT00940000159307	ENSGT00940000155894.o	ENSGT00390000005870	ENSGT00940000157544	ENSGT01080000257410.B.a.b.b.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a.a	ENSGT00940000158377.b.i.a.b	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00940000154826.e	ENSGT00390000011053
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	45				ENSGT00940000155894.p	ENSGT00390000005870.f	ENSGT00940000157544.e	ENSGT01080000257410.B.a.b.b.b.b	ENSGT00950000183072.a.a.a.b	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a.a	ENSGT00940000154607.b.a.r	ENSGT00940000154621.a.b.b.a.b	ENSGT00510000048324.c	ENSGT00940000165167.c	ENSGT00940000164858.b	ENSGT01030000234626.C.y ##22	ENSGT00940000158392.e.b.f	ENSGT00940000160253.c	ENSGT01040000240451.a.b.b.a.b.a	ENSGT00940000153759.a.a.f	ENSGT00530000063629.b.c.b	ENSGT00940000156360.c.a	ENSGT00940000160089.j.a	ENSGT00940000158548.j.b	ENSGT00940000159338.f	ENSGT00940000156402.B.a	ENSGT00990000204628.b	ENSGT00940000154826.e.a.b	ENSGT00390000011053.p	ENSGT00640000091497.a.s	ENSGT01050000244950.a.a.a.e
Cyprininae_a	ANCESTRAL SPECIES	57	ENSGT00390000015084.c.a.e	ENSGT00940000157108.x	ENSGT00940000159307.a	ENSGT00940000155894.o.b	ENSGT00390000005870.f	ENSGT00940000157544.e	ENSGT01080000257410.B.a.b.b.b.b	ENSGT00950000183072.a.a.a.b	ENSGT00530000063779.B.b.a	ENSGT00940000158377.b.i.a.a	ENSGT00940000154607.b.a.r	ENSGT00940000154621.a.b.b.a.b	ENSGT00510000048324.c	ENSGT00940000165167.c	ENSGT00940000164858.b	ENSGT01030000234626.C.y ##22	ENSGT00940000158392.e.b.f	ENSGT00940000160253.c	ENSGT01040000240451.a.b.b.a.b.a	ENSGT00940000153759.a.a.f	ENSGT00530000063629.b.c.b	ENSGT00940000156360.c.a	ENSGT00940000160089.j.a	ENSGT00940000158548.j.b	ENSGT00940000159338.f	ENSGT00940000156402.B.a	ENSGT00990000204628.b	ENSGT00940000154826.e.a.b	ENSGT00390000011053.p	ENSGT00640000091497.a.s	ENSGT01050000244950.a.a.a.e
Common carp reference	MODERN SPECIES	14	relch (ENSCCRG00000017320)	CSPP1 (ENSCCRG00000066335)	ARFGEF1 (ENSCCRG00000067213)	CPA6 (ENSCCRG00000036274)	PREX2 (ENSCCRG00000080090)	zgc:162928 (ENSCCRG00000036292)	sulf1 (ENSCCRG00000036324)	ENSCCRG00000080046	csrnp1b (ENSCCRG00000053358)	ENSCCRG00000028770	ENSCCRG00000073849	slc22a13b (ENSCCRG00000024497)	oxsr1b (ENSCCRG00000021159)	cry-dash (ENSCCRG00000075363)	map3k22 (ENSCCRG00000008472)	acaa1 (ENSCCRG00000075937) ##22	plcd1a (ENSCCRG00000069105)	VILL (ENSCCRG00000046543)	ctdspla (ENSCCRG00000029886)	gars1 (ENSCCRG00000008452)	hhatlb (ENSCCRG00000021858)	klhl40b (ENSCCRG00000073887)	ZBTB47 (ENSCCRG00000078821)	NKTR (ENSCCRG00000008004)	SEC22C (ENSCCRG00000007995)	vipr1b (ENSCCRG00000003284)	ENSCCRG00000050637	cst14a.1 (ENSCCRG00000023855)	fam162a (ENSCCRG00000055380)	ENSCCRG00000073127	ENSCCRG00000071120
Golden-line barbel	MODERN SPECIES	2752																acaa1 (ENSSGRG00000011719) ##22
Goldfish	MODERN SPECIES	43	NCK1 (ENSCARG00000042196)	gyg1b (ENSCARG00000042147)	sugct (ENSCARG00000042095)	cpb1 (ENSCARG00000042060)	ENSCARG00000042035	AGTR1 (ENSCARG00000042022)	zic1 (ENSCARG00000042004)	zic4 (ENSCARG00000041974)	SLCO5A1 (ENSCARG00000041965)	csrnp1b (ENSCARG00000041922)	ENSCARG00000041908	oxsr1b (ENSCARG00000038499)	myd88 (ENSCARG00000038314)	cry-dash (ENSCARG00000038070)	map3k22 (ENSCARG00000037958)	acaa1 (ENSCARG00000037659) ##22	ENSCARG00000037613	plcd1a (ENSCARG00000037161)	VILL (ENSCARG00000035265)	ctdspla (ENSCARG00000035184)	gars1 (ENSCARG00000035169)	hhatlb (ENSCARG00000035154)	klhl40b (ENSCARG00000035136)	ZBTB47 (ENSCARG00000035131)	ENSCARG00000035106	SEC22C (ENSCARG00000035092)	vipr1b (ENSCARG00000034944)	ENSCARG00000034840	CSTB (ENSCARG00000034825)	mix23 (ENSCARG00000034792)	fam162a (ENSCARG00000034785)
Cyprininae	ANCESTRAL SPECIES	396																ENSGT01030000234626.C.z ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.e	ENSGT00940000160253.d	ENSGT01040000240451.a.b.b.a.b.b	ENSGT00940000153759.a.a.e	ENSGT00530000063629.b.c.a	ENSGT00940000156360.c.b	ENSGT00940000160089.j.b	ENSGT00940000158548.j.a	ENSGT00940000159338.e	ENSGT00940000156402.B.b	ENSGT00990000204628.a	ENSGT00940000154826.e.a.a	ENSGT00390000011053.o	ENSGT00640000091497.a.t
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	16												pcyt1ba (ENSCARG00000005728)	FNDC3B (ENSCARG00000005751)	GHSR (ENSCARG00000005777)	ENSCARG00000005954	acaa1 (ENSCARG00000009221) ##22	ENSCARG00000009236	plcd1a (ENSCARG00000009275)	VILL (ENSCARG00000009501)	ctdspla (ENSCARG00000009872)	gars1 (ENSCARG00000009917)	hhatlb (ENSCARG00000009970)	ZBTB47 (ENSCARG00000010225)	ENSCARG00000010236	SEC22C (ENSCARG00000010299)	vipr1b (ENSCARG00000010318)	ENSCARG00000010413	ENSCARG00000010484	mix23 (ENSCARG00000010488)	fam162a (ENSCARG00000010500)	KPNA1 (ENSCARG00000010523)
Goldfish	MODERN SPECIES	2674																acaa1 (ENSCARG00000064863) ##22	ENSCARG00000064835	plcd1a (ENSCARG00000064201)	VILL (ENSCARG00000062947)	CTDSPL (ENSCARG00000062888)
Cyprininae_a	ANCESTRAL SPECIES	19	ENSGT00390000015084.c.a.f	ENSGT00940000157108.w	ENSGT00940000159307.b	ENSGT00940000155894.o.a	ENSGT00390000005870.e	ENSGT00940000157544.f	ENSGT01080000257410.B.a.b.b.b.a	ENSGT00950000183072.a.a.a.a	ENSGT00530000063779.B.b.b	ENSGT00940000158377.b.i.a.b	ENSGT00940000154607.b.a.q	ENSGT00940000154621.a.b.b.a.a	ENSGT00510000048324.d	ENSGT00940000165167.d	ENSGT00940000164858.a	ENSGT01030000234626.C.z ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.e	ENSGT00940000160253.d	ENSGT01040000240451.a.b.b.a.b.b	ENSGT00940000153759.a.a.e	ENSGT00530000063629.b.c.a	ENSGT00940000156360.c.b	ENSGT00940000160089.j.b	ENSGT00940000158548.j.a	ENSGT00940000159338.e	ENSGT00940000156402.B.b	ENSGT00990000204628.a	ENSGT00940000154826.e.b	ENSGT00940000154826.e.a.a	ENSGT00390000011053.o
Common carp reference	MODERN SPECIES	40	ARFGEF1 (ENSCCRG00000076582)	CPA6 (ENSCCRG00000021626)	PREX2 (ENSCCRG00000063334)	zgc:162928 (ENSCCRG00000071523)	sulf1 (ENSCCRG00000018764)	ENSCCRG00000061972	csrnp1b (ENSCCRG00000064440)	ENSCCRG00000075969	ENSCCRG00000065957	slc22a13b (ENSCCRG00000001426)	oxsr1b (ENSCCRG00000028775)	myd88 (ENSCCRG00000021276)	cry-dash (ENSCCRG00000021279)	map3k22 (ENSCCRG00000021289)	ENSCCRG00000042535	acaa1 (ENSCCRG00000061730) ##22	ENSCCRG00000071400	plcd1a (ENSCCRG00000044391)	VILL (ENSCCRG00000021316)	ctdspla (ENSCCRG00000021723)	gars1 (ENSCCRG00000021856)	hhatlb (ENSCCRG00000008017)	ZBTB47 (ENSCCRG00000021860)	NKTR (ENSCCRG00000074829)	SEC22C (ENSCCRG00000053674)	vipr1b (ENSCCRG00000007730)	ENSCCRG00000023862	ENSCCRG00000059121	mix23 (ENSCCRG00000056777)	fam162a (ENSCCRG00000050627)	KPNA1 (ENSCCRG00000019804)
Golden-line barbel	MODERN SPECIES	138										LIMD2 (ENSSGRG00000030377)	slc22a13b (ENSSGRG00000030376)	oxsr1b (ENSSGRG00000029977)	myd88 (ENSSGRG00000029968)	cry-dash (ENSSGRG00000029963)	map3k22 (ENSSGRG00000029962)	acaa1 (ENSSGRG00000029691) ##22	DLEC1 (ENSSGRG00000029677)	plcd1a (ENSSGRG00000029046)	VILL (ENSSGRG00000027832)	CTDSPL (ENSSGRG00000027797)	gars1 (ENSSGRG00000027647)	hhatlb (ENSSGRG00000027519)	klhl40b (ENSSGRG00000027518)	ZBTB47 (ENSSGRG00000027517)	SEC22C (ENSSGRG00000027490)	vipr1b (ENSSGRG00000027489)	ENSSGRG00000027487	ENSSGRG00000027462	CSTB (ENSSGRG00000027460)	mix23 (ENSSGRG00000027459)	fam162a (ENSSGRG00000027458)
Zebrafish	MODERN SPECIES	16	CSPP1 (ENSDARG00000100236)	ARFGEF1 (ENSDARG00000063474)	CPA6 (ENSDARG00000012013)	PREX2 (ENSDARG00000071692)	C24H8orf34 (ENSDARG00000095034)	sulf1 (ENSDARG00000038428)	SLCO5A1 (ENSDARG00000071685)	csrnp1b (ENSDARG00000038429)	ENSDARG00000100303	LIMD2 (ENSDARG00000112015)	slc22a13b (ENSDARG00000059166)	oxsr1b (ENSDARG00000027500)	myd88 (ENSDARG00000010169)	cry-dash (ENSDARG00000002396)	map3k22 (ENSDARG00000074219)	acaa1 (ENSDARG00000004687) ##22	ENSDARG00000075825	plcd1a (ENSDARG00000059123)	VILL (ENSDARG00000001909)	ctdspla (ENSDARG00000071673)	gars1 (ENSDARG00000059070)	hhatlb (ENSDARG00000005139)	klhl40b (ENSDARG00000019125)	ZBTB47 (ENSDARG00000079547)	NKTR (ENSDARG00000059097)	SEC22C (ENSDARG00000063387)	vipr1b (ENSDARG00000059058)	ENSDARG00000087238	ENSDARG00000093044	ENSDARG00000110153	cst14a.1 (ENSDARG00000028164)
Clupeiformes	ANCESTRAL SPECIES	69									ENSGT00950000183072.a.a.a	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089.j	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00940000165845.c.a
Atlantic herring	MODERN SPECIES	8	rec8b (ENSCHAG00000027630)	pdcd6 (ENSCHAG00000027635)	zgc:101569 (ENSCHAG00000027637)	bmp6 (ENSCHAG00000027638)	txndc5 (ENSCHAG00000027640)	bloc1s5 (ENSCHAG00000027641)	EEF1E1 (ENSCHAG00000027643)	slc35b3 (ENSCHAG00000027644)	ENSCHAG00000027646	ENSCHAG00000027647	slc22a13b (ENSCHAG00000027650)	oxsr1b (ENSCHAG00000001319)	myd88 (ENSCHAG00000004163)	cry-dash (ENSCHAG00000004176)	map3k22 (ENSCHAG00000004417)	acaa1 (ENSCHAG00000004599) ##22	DLEC1 (ENSCHAG00000005122)	plcd1a (ENSCHAG00000005449)	VILL (ENSCHAG00000008528)	ctdspla (ENSCHAG00000010049)	gars1 (ENSCHAG00000010176)	hhatlb (ENSCHAG00000010276)	klhl40b (ENSCHAG00000010684)	ZBTB47 (ENSCHAG00000010693)	MTRR (ENSCHAG00000010717)	cct5 (ENSCHAG00000010736)	cmbl (ENSCHAG00000011112)	sema5a (ENSCHAG00000011226)	ENSCHAG00000013235	timm21 (ENSCHAG00000013242)	NETO1 (ENSCHAG00000013249)
Denticle herring	MODERN SPECIES	11	ENSDCDG00000002214	pck2 (ENSDCDG00000002198)	psme1 (ENSDCDG00000002185)	dcaf11 (ENSDCDG00000002166)	thtpa (ENSDCDG00000002143)	ENSDCDG00000002142	pabpn1 (ENSDCDG00000002135)	ngdn (ENSDCDG00000002124)	csrnp1b (ENSDCDG00000002119)	ENSDCDG00000002109	slc22a13b (ENSDCDG00000002097)	oxsr1b (ENSDCDG00000001754)	myd88 (ENSDCDG00000001692)	cry-dash (ENSDCDG00000001682)	map3k22 (ENSDCDG00000001680)	acaa1 (ENSDCDG00000001671) ##22	ENSDCDG00000001667	plcd1a (ENSDCDG00000001353)	VILL (ENSDCDG00000000569)	ctdspla (ENSDCDG00000000359)	gars1 (ENSDCDG00000000288)	hhatlb (ENSDCDG00000000184)	klhl40b (ENSDCDG00000035829)	ZBTB47 (ENSDCDG00000035828)	SEC22C (ENSDCDG00000035827)	vipr1b (ENSDCDG00000035825)	ENSDCDG00000035823	rmc1 (ENSDCDG00000035816)	ENSDCDG00000035745	ssr1 (ENSDCDG00000035662)	ENSDCDG00000035660
Euteleosteomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a	ENSGT00940000158377.b.i.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.b	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b	ENSGT00950000183072.a.a.a	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.b	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089	ENSGT00940000180074	ENSGT00940000173926	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT01030000234626.C ##22
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000166667	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b
Ovalentaria_B	ANCESTRAL SPECIES	48	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000177791	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000166667	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a
Cichlidae	ANCESTRAL SPECIES	32	ENSGT00980000198902	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b	ENSGT00940000156530.c.`b.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT01030000235154	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154958
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.b.b.a.b.b.a.a.a.b	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a	ENSGT00940000156530.c.`b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT01030000235154	ENSGT00940000156327.k	ENSGT00940000156841.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	43	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.b.b.a.b.b.a.a.a.b	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a	ENSGT00940000156530.c.`b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154958
Haplochromini	ANCESTRAL SPECIES	49	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602	ENSGT01080000258001	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT00940000176860.h.b	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a	ENSGT00940000156530.c.`b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000182088
Haplochromini_A	ANCESTRAL SPECIES	55	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602	ENSGT01080000258001	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT00940000176860.h.b	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a	ENSGT00940000156530.c.`b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000182088
P. nyererei	MODERN SPECIES	520												ENSPNYG00000015330	map1lc3c (ENSPNYG00000015336)	strn (ENSPNYG00000015349)	btbd3a (ENSPNYG00000015385)	acaa1 (ENSPNYG00000015403) ##22	ENSPNYG00000015440	ENSPNYG00000015452	cnrip1a (ENSPNYG00000015458)	fbxo48 (ENSPNYG00000015468)	ENSPNYG00000015475	prokr1a (ENSPNYG00000015482)	snrpb2 (ENSPNYG00000015510)	KIF16B (ENSPNYG00000015563)	gas8 (ENSPNYG00000015666)	ndufaf5 (ENSPNYG00000015685)	esf1 (ENSPNYG00000015735)	ENSPNYG00000015755	ENSPNYG00000015778	SPRED2 (ENSPNYG00000015806)	ENSPNYG00000015821
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b.b	ENSGT00390000002918.a.a	ENSGT00940000154466.lc.a	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000176860.g.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a.b	ENSGT00940000156530.c.`b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b.a	ENSGT00390000004284.f	ENSGT00390000012248	ENSGT01070000255475	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005013562	pmm2 (ENSMZEG00005013577)	hmgb2a (ENSMZEG00005013587)	wdr17 (ENSMZEG00005013598)	ENSMZEG00005013610	ENSMZEG00005013616	hpgd (ENSMZEG00005013624)	glra3 (ENSMZEG00005013635)	ENSMZEG00005013649	GPM6A (ENSMZEG00005013660)	ENSMZEG00005013665	ENSMZEG00005013670	map1lc3c (ENSMZEG00005013680)	strn (ENSMZEG00005013705)	btbd3a (ENSMZEG00005013749)	acaa1 (ENSMZEG00005013779) ##22	ENSMZEG00005013804	ENSMZEG00005013808	ENSMZEG00005013813	cnrip1a (ENSMZEG00005013817)	fbxo48 (ENSMZEG00005013823)	ENSMZEG00005013832	prokr1a (ENSMZEG00005013836)	snrpb2 (ENSMZEG00005013844)	KIF16B (ENSMZEG00005013858)	gas8 (ENSMZEG00005013887)	ndufaf5 (ENSMZEG00005013897)	ENSMZEG00005013906	esf1 (ENSMZEG00005013912)	ENSMZEG00005013921	ENSMZEG00005013934
Eastern happy	MODERN SPECIES	18												ENSACLG00000002455	map1lc3c (ENSACLG00000002460)	strn (ENSACLG00000002475)	btbd3a (ENSACLG00000002508)	acaa1 (ENSACLG00000002539) ##22	ENSACLG00000002568	ENSACLG00000002637	ENSACLG00000002644	cnrip1a (ENSACLG00000002666)	fbxo48 (ENSACLG00000002696)	ENSACLG00000002702	prokr1a (ENSACLG00000002717)	snrpb2 (ENSACLG00000002731)	KIF16B (ENSACLG00000002787)	gas8 (ENSACLG00000002953)	ndufaf5 (ENSACLG00000002961)	esf1 (ENSACLG00000002972)	ENSACLG00000002989	ENSACLG00000003003	SPRED2 (ENSACLG00000003307)
Burton s mouthbrooder	MODERN SPECIES	560	ENSHBUG00000002358	ENSHBUG00000002353	pmm2 (ENSHBUG00000002337)	hmgb2a (ENSHBUG00000002331)	ENSHBUG00000002325	ENSHBUG00000000034	hpgd (ENSHBUG00000002299)	glra3 (ENSHBUG00000002241)	ENSHBUG00000002091	GPM6A (ENSHBUG00000002087)	ENSHBUG00000002070	ENSHBUG00000002063	map1lc3c (ENSHBUG00000002056)	strn (ENSHBUG00000002048)	btbd3a (ENSHBUG00000000021)	acaa1 (ENSHBUG00000002016) ##22	ENSHBUG00000002001	ENSHBUG00000001989	cnrip1a (ENSHBUG00000001986)	fbxo48 (ENSHBUG00000001975)	ENSHBUG00000001970	snrpb2 (ENSHBUG00000001962)	ENSHBUG00000001940	gas8 (ENSHBUG00000001919)	ndufaf5 (ENSHBUG00000001909)	esf1 (ENSHBUG00000001890)	ENSHBUG00000001880	ENSHBUG00000001866	SPRED2 (ENSHBUG00000001816)	ENSHBUG00000001812	ENSHBUG00000001802
Lyretail cichlid	MODERN SPECIES	454				ENSNBRG00000019741	ENSNBRG00000019760	pmm2 (ENSNBRG00000019798)	hmgb2a (ENSNBRG00000019831)	ENSNBRG00000019847	GPM6A (ENSNBRG00000019855)	ENSNBRG00000019873	ENSNBRG00000019885	map1lc3c (ENSNBRG00000019902)	map1lc3c (ENSNBRG00000019912)	strn (ENSNBRG00000019957)	btbd3a (ENSNBRG00000020120)	acaa1 (ENSNBRG00000020134) ##22	cnrip1a (ENSNBRG00000020157)	fbxo48 (ENSNBRG00000020175)	prokr1a (ENSNBRG00000020199)	snrpb2 (ENSNBRG00000020214)	ENSNBRG00000020231	ENSNBRG00000020242	ndufaf5 (ENSNBRG00000020263)	ENSNBRG00000020312	esf1 (ENSNBRG00000020319)	ENSNBRG00000020339	ENSNBRG00000020371	SPRED2 (ENSNBRG00000020478)	ENSNBRG00000020492	aftpha (ENSNBRG00000020506)	ENSNBRG00000020514
Midas cichlid	MODERN SPECIES	117										ENSACIG00000017885	ENSACIG00000017894	map1lc3c (ENSACIG00000017903)	strn (ENSACIG00000017922)	ENSACIG00000017952	btbd3a (ENSACIG00000018025)	acaa1 (ENSACIG00000018041) ##22	ENSACIG00000018065	ENSACIG00000018082	cnrip1a (ENSACIG00000018095)	fbxo48 (ENSACIG00000018104)	ENSACIG00000018116	prokr1a (ENSACIG00000018124)	snrpb2 (ENSACIG00000018146)	KIF16B (ENSACIG00000018167)	GAS8 (ENSACIG00000018223)	ndufaf5 (ENSACIG00000018247)	esf1 (ENSACIG00000018305)	ENSACIG00000018351	ENSACIG00000018359	etaa1a (ENSACIG00000018367)	ENSACIG00000018380
Pomacentridae	ANCESTRAL SPECIES	183													ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a
Pomacentridae_A	ANCESTRAL SPECIES	83	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00950000183209.b.a.b	ENSGT00940000177082	ENSGT00940000154186.a.r	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00940000156327.k	ENSGT00390000009597.d	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a
Amphiprion	ANCESTRAL SPECIES	124	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00940000175728	ENSGT00940000153974.A	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00950000183209.b.a.b	ENSGT00940000177082	ENSGT00940000154186.a.r	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00390000009597.d	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000168028	ENSGT00940000160591.a.a
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000022651	PTCD1 (ENSAPEG00000022632)	psen2 (ENSAPEG00000022613)	slc8a1a (ENSAPEG00000022587)	ENSAPEG00000022581	ENSAPEG00000022553	ENSAPEG00000022545	ENSAPEG00000022531	aftpha (ENSAPEG00000022525)	SPRED2 (ENSAPEG00000022501)	ENSAPEG00000022488	ENSAPEG00000022475	map1lc3c (ENSAPEG00000022466)	strn (ENSAPEG00000022429)	btbd3a (ENSAPEG00000022414)	acaa1 (ENSAPEG00000022396) ##22	esf1 (ENSAPEG00000022385)	ndufaf5 (ENSAPEG00000022351)	gas8 (ENSAPEG00000022335)	KIF16B (ENSAPEG00000022252)	snrpb2 (ENSAPEG00000022231)	prokr1a (ENSAPEG00000022223)	APLF (ENSAPEG00000022214)	ENSAPEG00000022203	fbxo48 (ENSAPEG00000022199)	cnrip1a (ENSAPEG00000022193)	ENSAPEG00000022167	IRF2BP2 (ENSAPEG00000022150)	ENSAPEG00000022141	tomm20b (ENSAPEG00000022117)	rbm34 (ENSAPEG00000022105)
Clown anemonefish	MODERN SPECIES	3496													map1lc3c (ENSAOCG00000000274)	strn (ENSAOCG00000005872)	btbd3a (ENSAOCG00000005908)	acaa1 (ENSAOCG00000005953) ##22	esf1 (ENSAOCG00000006033)	ndufaf5 (ENSAOCG00000006077)	gas8 (ENSAOCG00000006100)	ENSAOCG00000006130	KIF16B (ENSAOCG00000006265)	snrpb2 (ENSAOCG00000006300)	prokr1a (ENSAOCG00000006309)	APLF (ENSAOCG00000006318)	fbxo48 (ENSAOCG00000006324)	cnrip1a (ENSAOCG00000006339)	ENSAOCG00000006369	IRF2BP2 (ENSAOCG00000006382)
Spiny chromis	MODERN SPECIES	1392													ENSAPOG00000003126	strn (ENSAPOG00000003105)	btbd3a (ENSAPOG00000003079)	acaa1 (ENSAPOG00000003048) ##22	esf1 (ENSAPOG00000003004)	ENSAPOG00000024376	ndufaf5 (ENSAPOG00000024361)	GAS8 (ENSAPOG00000024316)	KIF16B (ENSAPOG00000024297)	snrpb2 (ENSAPOG00000024222)	prokr1a (ENSAPOG00000024209)	APLF (ENSAPOG00000024189)	fbxo48 (ENSAPOG00000024176)	cnrip1a (ENSAPOG00000024171)	ENSAPOG00000024153	PLPP7 (ENSAPOG00000024107)	ENSAPOG00000024102	ENSAPOG00000024095	ENSAPOG00000024039
Bicolor damselfish	MODERN SPECIES	356													map1lc3c (ENSSPAG00000019199)	strn (ENSSPAG00000019137)	btbd3a (ENSSPAG00000019123)	acaa1 (ENSSPAG00000019096) ##22	esf1 (ENSSPAG00000019077)	ndufaf5 (ENSSPAG00000019035)	gas8 (ENSSPAG00000018997)	KIF16B (ENSSPAG00000018950)	snrpb2 (ENSSPAG00000018915)	prokr1a (ENSSPAG00000018897)	ENSSPAG00000018884	fbxo48 (ENSSPAG00000018869)	cnrip1a (ENSSPAG00000018861)	ENSSPAG00000018852	ENSSPAG00000018835	ENSSPAG00000018792	ENSSPAG00000018772	TRPC7 (ENSSPAG00000018745)	ENSSPAG00000018719
Atherinomorphae	ANCESTRAL SPECIES	30	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00390000001858
Cyprinodontiformes	ANCESTRAL SPECIES	31	ENSGT00730000111690.B.g	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00390000001858
Aplocheiloidei	ANCESTRAL SPECIES	119									ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00940000155078.a.b.a.a	ENSGT00390000001858	ENSGT00940000154186.a.r	ENSGT00940000176860
Mangrove rivulus	MODERN SPECIES	931														strn (ENSKMAG00000009533)	btbd3a (ENSKMAG00000009577)	acaa1 (ENSKMAG00000009606) ##22
Turquoise killifish	MODERN SPECIES	1611	pmm2 (ENSNFUG00015001080)	MTMR7B (ENSNFUG00015001094)	AL935291.1 (ENSNFUG00015001108)	ENSNFUG00015001130	PATL1 (ENSNFUG00015001135)	ENSNFUG00015001162	HMGB2A (ENSNFUG00015001170)	CU928070.1 (ENSNFUG00015001226)	glra3 (ENSNFUG00015001276)	DOK1A (ENSNFUG00015001357)	GPM6AB (ENSNFUG00015001363)	map1lc3c (ENSNFUG00015001368)	ENSNFUG00015001370	strn (ENSNFUG00015001383)	btbd3a (ENSNFUG00015001422)	acaa1 (ENSNFUG00015001441) ##22	esf1 (ENSNFUG00015001485)	ndufaf5 (ENSNFUG00015001513)	ENSNFUG00015001553	KIF16B (ENSNFUG00015001583)	SNRPB2 (ENSNFUG00015001633)	prokr1a (ENSNFUG00015001643)	ENSNFUG00015001649	CNRIP1A (ENSNFUG00015001656)	ETAA1 (ENSNFUG00015001671)	SPRED2A (ENSNFUG00015001684)	rab1aa (ENSNFUG00015001695)	AFTPHA (ENSNFUG00015001714)	ENSNFUG00015001717	slc8a1a (ENSNFUG00015001729)	CSRP2BP (ENSNFUG00015001777)
Cyprinodontoidei	ANCESTRAL SPECIES	44	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00390000009477.t.b	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.i.b	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t.a	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00940000154186.a.r
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00520000055649.a	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00390000009477.t.b	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t.a	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00940000154186.a.r	ENSGT00940000177082	ENSGT00940000155129.B
Poecilia	ANCESTRAL SPECIES	36	ENSGT00520000055649.a	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00390000009477.t.b	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t.a	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT00390000009597.d	ENSGT00940000156841.a.b	ENSGT00940000154958	ENSGT00940000155078.a.b.a.a	ENSGT00940000154186.a.r	ENSGT00940000177082
Guppy	MODERN SPECIES	439	ENSPREG00000003915	ENSPREG00000003977	ENSPREG00000003983	mtmr7b (ENSPREG00000004011)	hmgb2a (ENSPREG00000004023)	wdr17 (ENSPREG00000004060)	hpgd (ENSPREG00000004188)	glra3 (ENSPREG00000004199)	ENSPREG00000004219	GPM6A (ENSPREG00000004237)	ENSPREG00000004278	map1lc3c (ENSPREG00000004296)	strn (ENSPREG00000004318)	GAS8 (ENSPREG00000004356)	btbd3a (ENSPREG00000004395)	acaa1 (ENSPREG00000004408) ##22	esf1 (ENSPREG00000004431)	ndufaf5 (ENSPREG00000004464)	ENSPREG00000004565	ENSPREG00000004764	snrpb2 (ENSPREG00000004780)	ENSPREG00000004796	fbxo48 (ENSPREG00000004805)	cnrip1a (ENSPREG00000004825)	ENSPREG00000004846	ENSPREG00000004854	SPRED2 (ENSPREG00000004862)	rab1aa (ENSPREG00000004889)	aftpha (ENSPREG00000004911)	ENSPREG00000004942	ENSPREG00000004958
NAME_6	ANCESTRAL SPECIES	208	ENSGT00520000055649.a	ENSGT00950000183026.A.a.a.b	ENSGT00940000155777.b	ENSGT00390000002918.a.a	ENSGT00940000154466	ENSGT00940000158602	ENSGT00940000154593.a.b	ENSGT00940000158368	ENSGT00940000155980.B	ENSGT00390000006915.d.j.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.i.b	ENSGT01020000230338.a.b.b.a.a.b.a.b.b.b.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t.a	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f
Sailfin molly	MODERN SPECIES	1253										EML6 (ENSPLAG00000005467)	mtif2 (ENSPLAG00000005403)	sde2 (ENSPLAG00000005393)	mrps28 (ENSPLAG00000005387)	snrpb2 (ENSPLAG00000005377)	capn1b (ENSPLAG00000005345)	acaa1 (ENSPLAG00000005252) ##22	AARS2 (ENSPLAG00000005223)	ENSPLAG00000005205	EOLA1 (ENSPLAG00000005198)	opn6a (ENSPLAG00000005195)	SRF (ENSPLAG00000005186)
Amazon molly	MODERN SPECIES	730	ENSPFOG00000008014	mtmr7b (ENSPFOG00000008060)	pmm2 (ENSPFOG00000008358)	ENSPFOG00000019935	hmgb2a (ENSPFOG00000008464)	wdr17 (ENSPFOG00000008516)	hpgd (ENSPFOG00000009149)	glra3 (ENSPFOG00000009236)	ENSPFOG00000009433	GPM6A (ENSPFOG00000009451)	ENSPFOG00000019936	ENSPFOG00000009531	map1lc3c (ENSPFOG00000009539)	strn (ENSPFOG00000009609)	btbd3a (ENSPFOG00000009923)	acaa1 (ENSPFOG00000009965) ##22	esf1 (ENSPFOG00000010101)	ndufaf5 (ENSPFOG00000010169)	ENSPFOG00000010321	KIF16B (ENSPFOG00000010427)	snrpb2 (ENSPFOG00000011001)	ENSPFOG00000011041	fbxo48 (ENSPFOG00000011080)	cnrip1a (ENSPFOG00000024518)
Platyfish	MODERN SPECIES	19	ENSXMAG00000027108	mtmr7b (ENSXMAG00000012190)	pmm2 (ENSXMAG00000012252)	hmgb2a (ENSXMAG00000012281)	ENSXMAG00000022980	ENSXMAG00000022041	hpgd (ENSXMAG00000025441)	glra3 (ENSXMAG00000017591)	ENSXMAG00000017612	GPM6A (ENSXMAG00000003945)	ENSXMAG00000017613	map1lc3c (ENSXMAG00000000781)	strn (ENSXMAG00000017614)	ENSXMAG00000023800	btbd3a (ENSXMAG00000017637)	acaa1 (ENSXMAG00000017640) ##22	esf1 (ENSXMAG00000017651)	ndufaf5 (ENSXMAG00000017654)	gas8 (ENSXMAG00000017665)	ENSXMAG00000026500	ENSXMAG00000021124	ENSXMAG00000022845	snrpb2 (ENSXMAG00000000699)	ENSXMAG00000023522	fbxo48 (ENSXMAG00000026821)	cnrip1a (ENSXMAG00000029354)	ENSXMAG00000027364	SPRED2 (ENSXMAG00000027999)	ENSXMAG00000015776	aftpha (ENSXMAG00000027245)	ENSXMAG00000021545
NAME_4	ANCESTRAL SPECIES	45												ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00390000009477.t.b	ENSGT00940000167000.b	ENSGT01030000234626.C ##22	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.i.b	ENSGT00940000167000.a	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t.a	ENSGT00940000162977	ENSGT00940000154063.C.a.a.a.a.e.a	ENSGT00940000154063.C.a.a.a.b.a.b	ENSGT00390000004692.d.a.m.b	ENSGT00940000166522	ENSGT00940000174495	ENSGT00940000162952.c	ENSGT00940000166147	ENSGT00390000018759	ENSGT00950000182886.a.a.b.s
Mummichog	MODERN SPECIES	647									map1lc3c (ENSFHEG00000015038)	strn (ENSFHEG00000015033)	ENSFHEG00000015003	ENSFHEG00000000369	esf1 (ENSFHEG00000014984)	btbd3a (ENSFHEG00000014929)	ENSFHEG00000014909	acaa1 (ENSFHEG00000014889) ##22	ndufaf5 (ENSFHEG00000014825)	KIF16B (ENSFHEG00000014787)	gas8 (ENSFHEG00000014602)	ENSFHEG00000014562	ENSFHEG00000014546	slc8a1a (ENSFHEG00000014525)	ENSFHEG00000014476	ENSFHEG00000000824	ENSFHEG00000014430	ENSFHEG00000014414	SPRED2 (ENSFHEG00000014393)	ENSFHEG00000014367	ENSFHEG00000014353	ENSFHEG00000014310	ENSFHEG00000014302
Sheepshead minnow	MODERN SPECIES	592												ENSCVAG00000007677	map1lc3c (ENSCVAG00000007687)	strn (ENSCVAG00000007752)	btbd3a (ENSCVAG00000007777)	acaa1 (ENSCVAG00000007839) ##22	ENSCVAG00000007858	esf1 (ENSCVAG00000007894)	ndufaf5 (ENSCVAG00000007958)	ENSCVAG00000007988	ENSCVAG00000008049	ASF1B (ENSCVAG00000008060)	prkacab (ENSCVAG00000009010)	ENSCVAG00000009040	ENSCVAG00000009057	zgc:136908 (ENSCVAG00000009125)	ndufb7 (ENSCVAG00000009138)	tecrb (ENSCVAG00000009161)	dnajb1b (ENSCVAG00000009170)	ENSCVAG00000009185	ENSCVAG00000000262
Oryzias	ANCESTRAL SPECIES	34	ENSGT00390000009597.d	ENSGT00940000156530.c.ab	ENSGT00390000004881.gb	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162977	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000004284.f	ENSGT01060000249238	ENSGT00390000012248	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b
Oryzias_a	ANCESTRAL SPECIES	59									ENSGT00390000007046.a	ENSGT00940000170452	ENSGT01060000249238	ENSGT00390000012248	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b.c	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT00940000157807.g.b	ENSGT00390000003751.a
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000027450	ENSORLG00000024703	ENSORLG00000018797	ENSORLG00000030094	snrpb2 (ENSORLG00000019421)	prokr1a (ENSORLG00000028973)	ENSORLG00000027448	fbxo48 (ENSORLG00000022137)	ENSORLG00000030567	ENSORLG00000024707	cnrip1a (ENSORLG00000025795)	ENSORLG00000030485	map1lc3c (ENSORLG00000020050)	strn (ENSORLG00000029355)	btbd3a (ENSORLG00000021984)	acaa1 (ENSORLG00000006901) ##22	ENSORLG00000020601	ENSORLG00000025445	ENSORLG00000020339	hpgd (ENSORLG00000022111)	ENSORLG00000025513	ENSORLG00000027060	ENSORLG00000027322	hmgb2a (ENSORLG00000018492)	pmm2 (ENSORLG00000030353)	mtmr7b (ENSORLG00000029038)	ENSORLG00000024086	ENSORLG00000018633	ENSORLG00000018617	patl1 (ENSORLG00000030240)	ENSORLG00000027219
Chinese medaka	MODERN SPECIES	3570																acaa1 (ENSOSIG00000001966) ##22
Oryzias_b	ANCESTRAL SPECIES	36	ENSGT00940000155078.a.b.a.a	ENSGT00940000156841.a.b	ENSGT00390000009597.d	ENSGT00940000156530.c.ab	ENSGT00390000004881.gb	ENSGT00390000014687	ENSGT00940000162977	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000004284.f	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.a.w.a	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000006915.d.j.a	ENSGT00940000155980.B	ENSGT00940000158368	ENSGT00940000154593.a.b	ENSGT00940000158602	ENSGT00940000154466	ENSGT00390000002918.a.a	ENSGT00940000155777.b	ENSGT00950000183026.A.a.a.b	ENSGT00940000163551.i.b	ENSGT00520000055649.a	ENSGT00730000111690.B.g	ENSGT00390000013973.A.a.c.b.a	ENSGT00390000008711.h	ENSGT01100000263483.E.b.b.u
Javanese ricefish	MODERN SPECIES		slc8a1a (ENSOJAG00000005866)	ENSOJAG00000005825	ENSOJAG00000005796	aftpha (ENSOJAG00000005739)	rab1aa (ENSOJAG00000005617)	SPRED2 (ENSOJAG00000005605)	ENSOJAG00000005569	ppp3r1a (ENSOJAG00000005550)	esf1 (ENSOJAG00000005538)	ndufaf5 (ENSOJAG00000005275)	ENSOJAG00000005248	snrpb2 (ENSOJAG00000005013)	ENSOJAG00000004954	strn (ENSOJAG00000004918)	btbd3a (ENSOJAG00000004877)	acaa1 (ENSOJAG00000004801) ##22	ENSOJAG00000004744	GPM6A (ENSOJAG00000004724)	ENSOJAG00000004705	ENSOJAG00000004672	glra3 (ENSOJAG00000004629)	hpgd (ENSOJAG00000004603)	hmgb2a (ENSOJAG00000004184)	pmm2 (ENSOJAG00000004148)	mtmr7b (ENSOJAG00000003674)	ENSOJAG00000003541	ENSOJAG00000003522	ENSOJAG00000003497	ENSOJAG00000003476	ENSOJAG00000003459	SAMD9 (ENSOJAG00000003450)
Indian medaka	MODERN SPECIES	5	rab1aa (ENSOMEG00000009074)	SPRED2 (ENSOMEG00000009093)	ENSOMEG00000009106	ENSOMEG00000009240	esf1 (ENSOMEG00000009311)	ndufaf5 (ENSOMEG00000009351)	ENSOMEG00000009408	snrpb2 (ENSOMEG00000009435)	prokr1a (ENSOMEG00000009448)	ENSOMEG00000009498	cnrip1a (ENSOMEG00000009532)	map1lc3c (ENSOMEG00000009556)	ENSOMEG00000009579	strn (ENSOMEG00000009596)	btbd3a (ENSOMEG00000009611)	acaa1 (ENSOMEG00000009632) ##22	GPM6A (ENSOMEG00000009652)	ENSOMEG00000009682	GRIK2 (ENSOMEG00000009820)	HACE1 (ENSOMEG00000009921)	bves (ENSOMEG00000009964)	ENSOMEG00000009978	ENSOMEG00000009987	taf2 (ENSOMEG00000010038)	enpp2 (ENSOMEG00000010105)	NOD1 (ENSOMEG00000010177)	ENSOMEG00000010206	ENSOMEG00000010227	ENSOMEG00000010262	ABHD5 (ENSOMEG00000010319)	ENSOMEG00000010342
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Climbing perch	MODERN SPECIES		ENSATEG00000016900	ENSATEG00000016852	ero1b (ENSATEG00000016786)	ENSATEG00000016758	NID1 (ENSATEG00000016612)	tbce (ENSATEG00000016581)	rbm34 (ENSATEG00000016567)	tomm20b (ENSATEG00000027344)	ENSATEG00000016524	ENSATEG00000016507	ENSATEG00000027122	ENSATEG00000016477	map1lc3c (ENSATEG00000016457)	ENSATEG00000016404	btbd3a (ENSATEG00000016380)	ENSATEG00000016334 ##22	esf1 (ENSATEG00000016321)	ndufaf5 (ENSATEG00000025747)	ENSATEG00000016278	ENSATEG00000016198	snrpb2 (ENSATEG00000016157)	prokr1a (ENSATEG00000016138)	ENSATEG00000016110	fbxo48 (ENSATEG00000016106)	cnrip1a (ENSATEG00000026047)	ENSATEG00000010114	ppp3r1b (ENSATEG00000012880)	ENSATEG00000027284	ENSATEG00000015981	ENSATEG00000015947	ENSATEG00000015914
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000002896	ENSBSLG00000002999	ENSBSLG00000003000	cnrip1a (ENSBSLG00000003001)	fbxo48 (ENSBSLG00000003002)	ENSBSLG00000003584	prokr1a (ENSBSLG00000003664)	snrpb2 (ENSBSLG00000003708)	KIF16B (ENSBSLG00000004029)	ENSBSLG00000004483	ndufaf5 (ENSBSLG00000004485)	esf1 (ENSBSLG00000004492)	map1lc3c (ENSBSLG00000004865)	strn (ENSBSLG00000005350)	btbd3a (ENSBSLG00000005934)	acaa1 (ENSBSLG00000005943) ##22	irf2bp2b (ENSBSLG00000005959)	ENSBSLG00000005963	tomm20b (ENSBSLG00000006293)	rbm34 (ENSBSLG00000006390)	tbce (ENSBSLG00000006604)	ENSBSLG00000007077	ero1b (ENSBSLG00000007251)	gtpbp2b (ENSBSLG00000007477)	rrp36 (ENSBSLG00000007544)	ENSBSLG00000007546	ENSBSLG00000007548	SLC29A1 (ENSBSLG00000007550)	ENSBSLG00000007568	ENSBSLG00000007571	sos1 (ENSBSLG00000007577)
Zig-zag eel	MODERN SPECIES	39	ENSMAMG00000027259	ero1b (ENSMAMG00000018900)	ENSMAMG00000018878	NID1 (ENSMAMG00000018873)	tbce (ENSMAMG00000018856)	rbm34 (ENSMAMG00000018828)	tomm20b (ENSMAMG00000018841)	ENSMAMG00000026883	ENSMAMG00000025517	ENSMAMG00000025287	ENSMAMG00000026490	ENSMAMG00000018801	map1lc3c (ENSMAMG00000018790)	ENSMAMG00000018746	btbd3a (ENSMAMG00000025397)	ENSMAMG00000018695 ##22	esf1 (ENSMAMG00000018648)	ndufaf5 (ENSMAMG00000018635)	ENSMAMG00000018627	ENSMAMG00000018548	snrpb2 (ENSMAMG00000018508)	ENSMAMG00000025879	ENSMAMG00000026568	ENSMAMG00000028308	ENSMAMG00000018475	fbxo48 (ENSMAMG00000018458)	cnrip1a (ENSMAMG00000018449)	ppp3r1b (ENSMAMG00000018418)	etaa1a (ENSMAMG00000018382)	ENSMAMG00000018347	ENSMAMG00000018327
Carangaria	ANCESTRAL SPECIES		ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT01030000235154	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b
Carangaria_A	ANCESTRAL SPECIES	42	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.a	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f
Seriola	ANCESTRAL SPECIES	80	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248.m	ENSGT00390000004284.f
Greater amberjack	MODERN SPECIES	116	ENSSDUG00000019065	ENSSDUG00000019082	ero1b (ENSSDUG00000019119)	GPR137B (ENSSDUG00000019152)	NID1 (ENSSDUG00000019168)	tbce (ENSSDUG00000019199)	rbm34 (ENSSDUG00000019237)	tomm20b (ENSSDUG00000019263)	ENSSDUG00000019275	ENSSDUG00000019291	irf2bp2b (ENSSDUG00000019293)	map1lc3c (ENSSDUG00000019330)	strn (ENSSDUG00000019364)	ENSSDUG00000019383	btbd3a (ENSSDUG00000019394)	acaa1 (ENSSDUG00000019413) ##22	esf1 (ENSSDUG00000019460)	ndufaf5 (ENSSDUG00000019500)	gas8 (ENSSDUG00000019514)	KIF16B (ENSSDUG00000019553)	snrpb2 (ENSSDUG00000019667)	prokr1a (ENSSDUG00000019702)	ENSSDUG00000019710	APLF (ENSSDUG00000019719)	fbxo48 (ENSSDUG00000019742)	cnrip1a (ENSSDUG00000019746)	ENSSDUG00000019758
Yellowtail amberjack	MODERN SPECIES	2504																acaa1 (ENSSLDG00000006773) ##22
Barramundi perch	MODERN SPECIES	432					NID1 (ENSLCAG00010011107)	tbce (ENSLCAG00010011560)	rbm34 (ENSLCAG00010011565)	tomm20b (ENSLCAG00010011568)	ENSLCAG00010011572	ENSLCAG00010011579	irf2bp2b (ENSLCAG00010011595)	map1lc3c (ENSLCAG00010011602)	strn (ENSLCAG00010011653)	esf1 (ENSLCAG00010011734)	btbd3a (ENSLCAG00010011741)	acaa1 (ENSLCAG00010011755) ##22	ENSLCAG00010011908	ENSLCAG00010011914	ndufaf5 (ENSLCAG00010011921)	gas8 (ENSLCAG00010011928)	KIF16B (ENSLCAG00010011982)	snrpb2 (ENSLCAG00010012100)	ENSLCAG00010012111	prokr1a (ENSLCAG00010012116)	ENSLCAG00010012123	fbxo48 (ENSLCAG00010012126)	cnrip1a (ENSLCAG00010012131)	ENSLCAG00010012148	ENSLCAG00010012185
Pleuronectoidei	ANCESTRAL SPECIES	87						ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT01060000249238	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.ab	ENSGT01030000235154	ENSGT00940000156841.a.b
Turbot	MODERN SPECIES	20	ENSSMAG00000028308	ENSSMAG00000031291	ENSSMAG00000020922	ENSSMAG00000020926	ENSSMAG00000020942	ero1b (ENSSMAG00000020943)	ENSSMAG00000020945	NID1 (ENSSMAG00000020946)	tbce (ENSSMAG00000020949)	rbm34 (ENSSMAG00000020955)	tomm20b (ENSSMAG00000020956)	ENSSMAG00000020957	map1lc3c (ENSSMAG00000020959)	ENSSMAG00000020961	ENSSMAG00000020962	ENSSMAG00000020964 ##22	ENSSMAG00000020988	ENSSMAG00000020991	ENSSMAG00000021161	ENSSMAG00000021160	ENSSMAG00000021159	ENSSMAG00000021158	ENSSMAG00000021157	rcor3 (ENSSMAG00000021156)	ENSSMAG00000021155	ENSSMAG00000021154	ENSSMAG00000021153	ENSSMAG00000034132	ENSSMAG00000021152	ENSSMAG00000029348	ENSSMAG00000035115
Tongue sole	MODERN SPECIES	19	tbce (ENSCSEG00000000986)	rbm34 (ENSCSEG00000000993)	tomm20b (ENSCSEG00000001016)	ENSCSEG00000001023	gtpbp2b (ENSCSEG00000001025)	ENSCSEG00000001029	ENSCSEG00000001036	RRP36 (ENSCSEG00000001039)	JAG1 (ENSCSEG00000001045)	GPR137B (ENSCSEG00000001094)	ero1b (ENSCSEG00000001101)	irf2bp2b (ENSCSEG00000001117)	map1lc3c (ENSCSEG00000001128)	strn (ENSCSEG00000001135)	btbd3a (ENSCSEG00000001145)	acaa1 (ENSCSEG00000001149) ##22	esf1 (ENSCSEG00000001159)	ndufaf5 (ENSCSEG00000001166)	KIF16B (ENSCSEG00000001173)	ENSCSEG00000001182	ENSCSEG00000001184	snrpb2 (ENSCSEG00000001191)	fbxo48 (ENSCSEG00000001200)	ENSCSEG00000001206	prokr1a (ENSCSEG00000001210)	cnrip1a (ENSCSEG00000001218)	ENSCSEG00000001222	PET117 (ENSCSEG00000001238)	kat14 (ENSCSEG00000001239)	dzank1 (ENSCSEG00000001243)	polr3f (ENSCSEG00000001247)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT01100000263621	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b
Cottioidei	ANCESTRAL SPECIES	3	ENSGT01030000234642.a.b.b.d.a.f	ENSGT00940000160148	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT01030000235154	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT00940000155078.a.b.a.a
Lumpfish	MODERN SPECIES		ENSCLMG00005011639	ENSCLMG00005011640	ENSCLMG00005011641	ENSCLMG00005011642	ENSCLMG00005011643	ENSCLMG00005011644	tomm20b (ENSCLMG00005011645)	ENSCLMG00005011647	irf2bp2b (ENSCLMG00005011648)	map1lc3c (ENSCLMG00005011649)	strn (ENSCLMG00005011651)	ENSCLMG00005012332	btbd3a (ENSCLMG00005012333)	ENSCLMG00005012334	ENSCLMG00005012335	acaa1 (ENSCLMG00005012337) ##22	esf1 (ENSCLMG00005012339)	ndufaf5 (ENSCLMG00005012340)	ENSCLMG00005012342	GAS8 (ENSCLMG00005012363)	ENSCLMG00005012365	snrpb2 (ENSCLMG00005012375)	APLF (ENSCLMG00005012402)	prokr1a (ENSCLMG00005012404)	fbxo48 (ENSCLMG00005012405)	cnrip1a (ENSCLMG00005012406)	ppp3r1b (ENSCLMG00005012407)	ENSCLMG00005012507	ENSCLMG00005012508	ENSCLMG00005012510	ENSCLMG00005012511
Stickleback	MODERN SPECIES	4	gtpbp2b (ENSGACG00000019729)	ENSGACG00000019728	ENSGACG00000019727	ero1b (ENSGACG00000019726)	ENSGACG00000019723	ENSGACG00000019722	NID1 (ENSGACG00000019719)	tbce (ENSGACG00000019717)	ENSGACG00000019716	ENSGACG00000019715	tomm20b (ENSGACG00000019714)	ENSGACG00000019713	map1lc3c (ENSGACG00000019711)	strn (ENSGACG00000019707)	btbd3a (ENSGACG00000019704)	acaa1 (ENSGACG00000019695) ##22	esf1 (ENSGACG00000019693)	ndufaf5 (ENSGACG00000019689)	ENSGACG00000019687	KIF16B (ENSGACG00000019684)	snrpb2 (ENSGACG00000019682)	prokr1a (ENSGACG00000019681)	APLF (ENSGACG00000019678)	fbxo48 (ENSGACG00000019676)	ENSGACG00000019675	cnrip1a (ENSGACG00000019671)	ENSGACG00000019670	ppp3r1b (ENSGACG00000019669)	ENSGACG00000019668	meis1b (ENSGACG00000019665)	SPRED2 (ENSGACG00000019664)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.a
Pike perch	MODERN SPECIES	272								irf2bp2b (ENSSLUG00000020375)	map1lc3c (ENSSLUG00000020369)	ENSSLUG00000020361	strn (ENSSLUG00000020326)	btbd3a (ENSSLUG00000020220)	ENSSLUG00000020206	esf1 (ENSSLUG00000020201)	ENSSLUG00000020199	acaa1 (ENSSLUG00000020189) ##22	gas8 (ENSSLUG00000020185)	KIF16B (ENSSLUG00000018911)	snrpb2 (ENSSLUG00000018745)	ENSSLUG00000018739
Channel bull blenny	MODERN SPECIES		ENSCGOG00000000346	ENSCGOG00000000329	ero1b (ENSCGOG00000000281)	GPR137B (ENSCGOG00000000251)	NID1 (ENSCGOG00000000063)	tbce (ENSCGOG00000000062)	rbm34 (ENSCGOG00000000061)	ENSCGOG00000000060	ENSCGOG00000000059	ENSCGOG00000000058	ENSCGOG00000000057	tomm20b (ENSCGOG00000000056)	irf2bp2b (ENSCGOG00000000055)	strn (ENSCGOG00000000054)	btbd3a (ENSCGOG00000000053)	acaa1 (ENSCGOG00000000052) ##22	esf1 (ENSCGOG00000000051)	ndufaf5 (ENSCGOG00000000050)	gas8 (ENSCGOG00000000048)	KIF16B (ENSCGOG00000000047)	snrpb2 (ENSCGOG00000000046)	ENSCGOG00000000045	ENSCGOG00000000044	prokr1a (ENSCGOG00000000043)	prokr1a (ENSCGOG00000000042)	ENSCGOG00000000041	fbxo48 (ENSCGOG00000000040)	cnrip1a (ENSCGOG00000000039)	ENSCGOG00000000038	ENSCGOG00000000037	ENSCGOG00000000036
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT01100000263621	ENSGT00940000176873	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.j	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.b	ENSGT00390000007753.a	ENSGT00940000153986.b.a.u.b	ENSGT00940000156318.b.b	ENSGT00530000063405.a	ENSGT00390000011249	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000162888.A.a.a.b.r.a	ENSGT00940000167000	ENSGT01030000234626.C ##22	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.a.a	ENSGT00940000156530.c.`b.a	ENSGT00390000009597.d	ENSGT00940000156327.k	ENSGT00940000156841.a.b	ENSGT00940000154556.a.a
Large yellow croaker	MODERN SPECIES	481	tp53bp2b (ENSLCRG00005014407)	gtpbp2b (ENSLCRG00005014409)	ENSLCRG00005014412	ero1b (ENSLCRG00005014434)	ENSLCRG00005015194	NID1 (ENSLCRG00005015198)	tbce (ENSLCRG00005015214)	rbm34 (ENSLCRG00005015231)	tomm20b (ENSLCRG00005015232)	irf2bp2b (ENSLCRG00005015234)	map1lc3c (ENSLCRG00005015235)	strn (ENSLCRG00005015246)	ENSLCRG00005015745	ENSLCRG00005015752	btbd3a (ENSLCRG00005017654)	acaa1 (ENSLCRG00005017657) ##22	ENSLCRG00005017662	ndufaf5 (ENSLCRG00005017664)	gas8 (ENSLCRG00005017751)	KIF16B (ENSLCRG00005017763)	snrpb2 (ENSLCRG00005017778)	prokr1a (ENSLCRG00005017781)	ENSLCRG00005017783	fbxo48 (ENSLCRG00005017784)	cnrip1a (ENSLCRG00005017786)	ENSLCRG00005017789	ENSLCRG00005017792	ENSLCRG00005017794	ENSLCRG00005017797	ENSLCRG00005017803	SPRED2 (ENSLCRG00005017808)
European seabass	MODERN SPECIES	19	ENSDLAG00005031784	ENSDLAG00005018096	ENSDLAG00005005234	ENSDLAG00005034767	ENSDLAG00005034598	ENSDLAG00005018689	tbce (ENSDLAG00005033374)	ENSDLAG00005031589	tomm20b (ENSDLAG00005028903)	ENSDLAG00005030660	map1lc3c (ENSDLAG00005018219)	ENSDLAG00005018273	ENSDLAG00005027525	ENSDLAG00005033243	ENSDLAG00005034437	ENSDLAG00005033652 ##22	ENSDLAG00005001698	ENSDLAG00005032703	ENSDLAG00005004838	ENSDLAG00005003551	ENSDLAG00005029403	ENSDLAG00005026596	ENSDLAG00005032700	ENSDLAG00005014777	ENSDLAG00005014767	ENSDLAG00005032035	ENSDLAG00005034107	ENSDLAG00005019929	ENSDLAG00005028650	ENSDLAG00005028886	ENSDLAG00005033613
Gilthead seabream	MODERN SPECIES		ENSSAUG00010010445	NID1 (ENSSAUG00010010447)	tbce (ENSSAUG00010010467)	rbm34 (ENSSAUG00010010478)	tomm20b (ENSSAUG00010010484)	irf2bp2b (ENSSAUG00010010489)	map1lc3c (ENSSAUG00010010493)	ENSSAUG00010010500	strn (ENSSAUG00010010507)	ENSSAUG00010012110	ENSSAUG00010012113	ENSSAUG00010012116	btbd3a (ENSSAUG00010012119)	ENSSAUG00010012126	ENSSAUG00010012133	acaa1 (ENSSAUG00010012141) ##22	esf1 (ENSSAUG00010012175)	ndufaf5 (ENSSAUG00010012237)	gas8 (ENSSAUG00010012853)	KIF16B (ENSSAUG00010012862)	snrpb2 (ENSSAUG00010012987)	prokr1a (ENSSAUG00010012999)	ENSSAUG00010013000	fbxo48 (ENSSAUG00010013002)	cnrip1a (ENSSAUG00010013003)	ppp3r1b (ENSSAUG00010013005)	ENSSAUG00010013021	ENSSAUG00010013026	ENSSAUG00010013062	ENSSAUG00010015211	ENSSAUG00010015213
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	3228															btbd3a (ENSLBEG00000015999)	acaa1 (ENSLBEG00000015959) ##22
Ballan wrasse	MODERN SPECIES	1376															btbd3a (ENSLBEG00000002044)	acaa1 (ENSLBEG00000001963) ##22	ENSLBEG00000001921	ENSLBEG00000001908	ENSLBEG00000001886
Pinecone sodierfish	MODERN SPECIES	12	ENSMMDG00005014839	csrnp1b (ENSMMDG00005014841)	ENSMMDG00005014842	slc22a13b (ENSMMDG00005014845)	slc22a13b (ENSMMDG00005014855)	slc22a13b (ENSMMDG00005014860)	slc22a13b (ENSMMDG00005014867)	slc22a13b (ENSMMDG00005014874)	slc22a13b (ENSMMDG00005014877)	slc22a13b (ENSMMDG00005014881)	slc22a13b (ENSMMDG00005014892)	oxsr1b (ENSMMDG00005014929)	myd88 (ENSMMDG00005017199)	cry-dash (ENSMMDG00005017204)	map3k22 (ENSMMDG00005017227)	acaa1 (ENSMMDG00005017256) ##22	ENSMMDG00005017458	plcd1a (ENSMMDG00005017481)	VILL (ENSMMDG00005019207)	ctdspla (ENSMMDG00005019283)	gars1 (ENSMMDG00005019314)	gars1 (ENSMMDG00005019326)	hhatlb (ENSMMDG00005019331)	klhl40b (ENSMMDG00005019336)	ZBTB47 (ENSMMDG00005019346)	ENSMMDG00005019347	NKTR (ENSMMDG00005002506)	SEC22C (ENSMMDG00005002514)	vipr1b (ENSMMDG00005002519)	ENSMMDG00005002534	NANOS2 (ENSMMDG00005002544)
Cod	MODERN SPECIES	15	ENSGMOG00000002580	ENSGMOG00000033462	ENSGMOG00000028836	ENSGMOG00000022484	ENSGMOG00000015256	slc22a13b (ENSGMOG00000023707)	ENSGMOG00000024050	ENSGMOG00000031936	oxsr1b (ENSGMOG00000022457)	ENSGMOG00000024763	ENSGMOG00000022290	ENSGMOG00000034348	myd88 (ENSGMOG00000010938)	cry-dash (ENSGMOG00000010925)	map3k22 (ENSGMOG00000010888)	acaa1 (ENSGMOG00000010850) ##22	ENSGMOG00000022481	plcd1a (ENSGMOG00000010770)	VILL (ENSGMOG00000010755)	ctdspla (ENSGMOG00000032730)	gars1 (ENSGMOG00000010728)	gars1 (ENSGMOG00000008856)	hhatlb (ENSGMOG00000003835)	klhl40b (ENSGMOG00000003812)	ENSGMOG00000031489	NKTR (ENSGMOG00000022593)	ENSGMOG00000033023	ENSGMOG00000003689	vipr1b (ENSGMOG00000000393)	ENSGMOG00000034661	ENSGMOG00000024233
Protacanthopterygii	ANCESTRAL SPECIES	118	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT00950000183072.a.a.a	ENSGT00940000158377.b.i.a	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT00970000197767	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089	ENSGT00940000158548	ENSGT00940000159338	ENSGT00940000156402.B	ENSGT00990000204628	ENSGT01050000244950.a.a.a	ENSGT00640000091497.a	ENSGT00390000011053
Northern pike	MODERN SPECIES	20	AGTR1 (ENSELUG00000004016)	ENSELUG00000030036	cpb1 (ENSELUG00000004007)	gyg1b (ENSELUG00000003979)	bdh1 (ENSELUG00000003958)	NCK1 (ENSELUG00000003948)	slc35g2b (ENSELUG00000003938)	ENSELUG00000003931	csrnp1b (ENSELUG00000003916)	ENSELUG00000003901	slc22a13b (ENSELUG00000003892)	oxsr1b (ENSELUG00000003874)	myd88 (ENSELUG00000003867)	cry-dash (ENSELUG00000003858)	map3k22 (ENSELUG00000003835)	acaa1 (ENSELUG00000003809) ##22	ENSELUG00000003780	plcd1a (ENSELUG00000003744)	VILL (ENSELUG00000003734)	ENSELUG00000003703	gars1 (ENSELUG00000003692)	hhatlb (ENSELUG00000003665)	klhl40b (ENSELUG00000003654)	ENSELUG00000003643	NKTR (ENSELUG00000003616)	SEC22C (ENSELUG00000003560)	vipr1b (ENSELUG00000003531)	ENSELUG00000003494	KPNA1 (ENSELUG00000003462)	fam162a (ENSELUG00000003421)	ccdc58 (ENSELUG00000000112)
Salmoninae	ANCESTRAL SPECIES	452	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269.g.b	ENSGT00940000160269.g.a	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601.u	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT00950000183072.a.a.a.d	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s.a.a	ENSGT00940000165167	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.d
Huchen	MODERN SPECIES	2935															cry-dash (ENSHHUG00000042660)	acaa1 (ENSHHUG00000042692) ##22
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b.m.a	ENSGT00940000154200.B.r	ENSGT00940000160269.g.a	ENSGT01050000244888.b.a.c.b.d	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601.u	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT00950000183072.a.a.a.d	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s.a.a	ENSGT00940000165167	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.d	ENSGT00940000153759.a.a.g	ENSGT00940000158548	ENSGT00640000091497.a	ENSGT00390000011053
Salmo	ANCESTRAL SPECIES	67	ENSGT00940000156473.f.a	ENSGT00520000055625.b.`b	ENSGT01030000234558.A.a.b.m.a	ENSGT00940000154200.B.r	ENSGT00940000160269.g.a	ENSGT01050000244888.b.a.c.b.d	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601.u.a	ENSGT00390000008686.c.d	ENSGT00950000183072.a.a.a.d	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s.b	ENSGT00940000165167	ENSGT01030000234626.C ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.d	ENSGT00940000153759.a.a.g	ENSGT00940000158548	ENSGT00640000091497.a	ENSGT00390000011053
River trout	MODERN SPECIES	201											ENSSTUG00000024001	csrnp1b (ENSSTUG00000023989)	ENSSTUG00000023983	slc22a13b (ENSSTUG00000023956)	cry-dash (ENSSTUG00000023849)	acaa1 (ENSSTUG00000023752) ##22	DLEC1 (ENSSTUG00000023673)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000044978	ENSSSAG00000044847	zic4 (ENSSSAG00000044903)	zic1 (ENSSSAG00000044953)	ENSSSAG00000088397	AGTR1 (ENSSSAG00000066734)	gyg1b (ENSSSAG00000045396)	bdh1 (ENSSSAG00000097728)	ENSSSAG00000085614	slc35g2b (ENSSSAG00000109757)	ENSSSAG00000075501	ENSSSAG00000054598	ENSSSAG00000121424	slc22a13b (ENSSSAG00000116575)	cry-dash (ENSSSAG00000045219)	acaa1 (ENSSSAG00000121911) ##22	ENSSSAG00000045522	ENSSSAG00000085672	plcd1a (ENSSSAG00000111220)	ENSSSAG00000083683	gars (ENSSSAG00000045811)	ENSSSAG00000053230	ENSSSAG00000081963	mix23 (ENSSSAG00000045678)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234626.C.bb ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234626.C.bb ##22
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2508																ENSOTSG00005020234 ##22
Chinook salmon	MODERN SPECIES	1914																ENSOTSG00005018878 ##22	ENSOTSG00005018879
Chinook salmon	MODERN SPECIES	2825																ENSOTSG00005021057 ##22
Chinook salmon	MODERN SPECIES	2486																ENSOTSG00005020207 ##22
Oncorhynchus	ANCESTRAL SPECIES	125						ENSGT01050000244888.b.a.c.b.c	ENSGT00940000154674.q.b.f	ENSGT00940000156929	ENSGT00940000156601.t.a	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT00950000183072.a.a.a.d	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s.a.a	ENSGT00940000165167.b	ENSGT01030000234626.C.cb ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.d	ENSGT00940000153759.a.a.g	ENSGT00940000158548	ENSGT00640000091497.a	ENSGT00390000011053
Oncorhynchus_a	ANCESTRAL SPECIES	168						ENSGT01050000244888.b.a.c.b.c	ENSGT00940000154674.q.b.f	ENSGT00940000156929	ENSGT00940000156601.t.a	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT00950000183072.a.a.a.d	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a.s.a.a	ENSGT00940000165167.b	ENSGT01030000234626.C.cb ##22	ENSGT00390000006098	ENSGT00940000158392.e.b.d	ENSGT00940000153759.a.a.g	ENSGT00940000158548	ENSGT00640000091497.a	ENSGT00390000011053
Coho salmon	MODERN SPECIES	9					AGTR1 (ENSOKIG00005050987)	gyg1b (ENSOKIG00005050982)	bdh1 (ENSOKIG00005050971)	ENSOKIG00005050954	slc35g2b (ENSOKIG00005050951)	GORASP1 (ENSOKIG00005050942)	ENSOKIG00005050931	ENSOKIG00005050920	slc22a13b (ENSOKIG00005050908)	cry-dash (ENSOKIG00005050871)	ENSOKIG00005050852	acaa1 (ENSOKIG00005050841) ##22	ENSOKIG00005050798	plcd1a (ENSOKIG00005049333)	ENSOKIG00005048422	ENSOKIG00005048248	gars1 (ENSOKIG00005047535)	fam162a (ENSOKIG00005047172)	mix23 (ENSOKIG00005047083)	zic1 (ENSOKIG00005047030)	zic4 (ENSOKIG00005046960)	ENSOKIG00005046914	ENSOKIG00005046821	ENSOKIG00005045089	ENSOKIG00005044253	ENSOKIG00005044198	dipk2ab (ENSOKIG00005044122)
Chinook salmon	MODERN SPECIES	176															cry-dash (ENSOTSG00005020738)	acaa1 (ENSOTSG00005020683) ##22	ENSOTSG00005020681	plcd1a (ENSOTSG00005020378)
Rainbow trout	MODERN SPECIES	2	mix23 (ENSOMYG00000033022)	ENSOMYG00000033028	ENSOMYG00000032843	gyg1b (ENSOMYG00000032717)	bdh1 (ENSOMYG00000032666)	ENSOMYG00000070920	ENSOMYG00000032653	slc35g2b (ENSOMYG00000032638)	ENSOMYG00000051533	ENSOMYG00000076255	ENSOMYG00000032644	ENSOMYG00000048009	SLC22A13 (ENSOMYG00000032606)	ENSOMYG00000069127	cry-dash (ENSOMYG00000032594)	acaa1 (ENSOMYG00000032320) ##22	ENSOMYG00000050640	plcd1a (ENSOMYG00000032160)	ENSOMYG00000032082
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Bilateria	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Fruitfly	MODERN SPECIES	16	ppk11 (FBgn0065109)	IP3K1 (FBgn0032147)	CG4036 (FBgn0032149)	CG13123 (FBgn0032150)	nAChRalpha6 (FBgn0032151)	Fkbp59 (FBgn0029174)	CG34183 (FBgn0085212)	CG4537 (FBgn0032153)	mtDNA-helicase (FBgn0032154)	Bka (FBgn0010520)	RpS2 (FBgn0004867)	Muc30E (FBgn0053300)	CG13124 (FBgn0032156)	Etl1 (FBgn0032157)	Srp54 (FBgn0024285)	yip2 (FBgn0040064) ##22	CG5885 (FBgn0025700)	CG4598 (FBgn0032160)	CG4594 (FBgn0032161)	CG4592 (FBgn0032162)	TbCMF46 (FBgn0032163)	CG42366 (FBgn0259712)	CG42367 (FBgn0259713)	Cpr30F (FBgn0051876)	CG31712 (FBgn0051712)	Datp (FBgn0287788)	CG4619 (FBgn0032166)	CG5853 (FBgn0032167)	CG13126 (FBgn0032168)	CG4709 (FBgn0032169)	CG5846 (FBgn0032171)
Caenorhabditis elegans	MODERN SPECIES	2	set-25 (WBGene00012802)	F56A8.8 (WBGene00010142)	npp-18 (WBGene00003804)	Y43F4B.5 (WBGene00012803)	klp-19 (WBGene00002229)	slc-36.1 (WBGene00012804)	Y43F4B.10 (WBGene00012807)	dph-7 (WBGene00012806)	F53A2.11 (WBGene00194870)	F53A2.1 (WBGene00009949)	sdz-20 (WBGene00009950)	F53A2.3 (WBGene00009951)	nud-1 (WBGene00003829)	dro-1 (WBGene00001092)	ife-1 (WBGene00002059)	acaa-2 (WBGene00009952) ##22	mtm-6 (WBGene00003478)	F53A2.9 (WBGene00009953)	T03F6.9 (WBGene00045482)	lis-1 (WBGene00003047)	T03F6.10 (WBGene00185005)	T03F6.6 (WBGene00011401)	T03F6.4 (WBGene00011400)	T03F6.3 (WBGene00011399)	dnj-17 (WBGene00001035)	qdpr-1 (WBGene00011398)	F11F1.1 (WBGene00008714)	F11F1.4 (WBGene00008716)	F11F1.5 (WBGene00008717)	mig-18 (WBGene00003249)	ttr-52 (WBGene00008719)
Chordata	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Gnathostomata	ANCESTRAL SPECIES	134								ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT01100000266768	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010	ENSGT00940000170114	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a
Euteleostomi	ANCESTRAL SPECIES	56	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01100000266768	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00940000170114	ENSGT00950000183010.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Actinopterygii	ANCESTRAL SPECIES	86	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00970000193642	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394
Neopterygii	ANCESTRAL SPECIES	183	ENSGT00940000166601	ENSGT00390000017970	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000159527	ENSGT01030000234626.D ##22	ENSGT00940000159394
Osteoglossocephalai	ANCESTRAL SPECIES	5	ENSGT00550000074969	ENSGT00940000155143	ENSGT00940000153876.B	ENSGT00940000157468.a.a.b	ENSGT00950000183174.A	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000166026	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00950000182888.b	ENSGT00940000166999.A	ENSGT00910000144273	ENSGT00940000159527	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00940000173670	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.a	ENSGT00940000159978	ENSGT00940000153654
Osteoglossiformes	ANCESTRAL SPECIES	82	ENSGT00940000164527.a	ENSGT00390000003209	ENSGT00940000161620	ENSGT00940000156240	ENSGT00940000154089.b	ENSGT00500000044909	ENSGT00940000156812	ENSGT00950000183191.b	ENSGT00940000166026	ENSGT00940000154842.a.a	ENSGT00940000169174	ENSGT00950000182888.b	ENSGT00940000166999.A	ENSGT00910000144273	ENSGT00940000159527	ENSGT01030000234626.D ##22	ENSGT00390000000378.d.b	ENSGT00390000003682	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.f	ENSGT01030000235069
Asian bonytongue	MODERN SPECIES	13	ENSSFOG00015015292	HIC2 (ENSSFOG00015015304)	PI4KA (ENSSFOG00015015366)	serpind1 (ENSSFOG00015015477)	snap29 (ENSSFOG00015015492)	polb (ENSSFOG00015015567)	enkd1 (ENSSFOG00015015654)	vdac3 (ENSSFOG00015015682)	ikbkb (ENSSFOG00015015783)	PLAT (ENSSFOG00015016201)	CLTCL1 (ENSSFOG00015016343)	SLC25A1 (ENSSFOG00015016457)	dynll1 (ENSSFOG00015025405)	ENSSFOG00015016474	GAK (ENSSFOG00015016500)	acaa2 (ENSSFOG00015016555) ##22	rpl6 (ENSSFOG00015016589)	wdr31 (ENSSFOG00015016618)	ENSSFOG00015016639	tor4ab (ENSSFOG00015029751)	ENSSFOG00015027175	ENSSFOG00015016701
P. kingsleyae	MODERN SPECIES	271									ENSPKIG00000001042	ENSPKIG00000001081	zgc:158343 (ENSPKIG00000001153)	tor4ab (ENSPKIG00000001168)	ENSPKIG00000001180	wdr31 (ENSPKIG00000001204)	GAK (ENSPKIG00000001261)	acaa2 (ENSPKIG00000001360) ##22	dynll1 (ENSPKIG00000001421)	rpl6 (ENSPKIG00000001407)	ENSPKIG00000001435	polb (ENSPKIG00000001456)	enkd1 (ENSPKIG00000001481)	ENSPKIG00000001500	ikbkb (ENSPKIG00000001536)	PLAT (ENSPKIG00000001615)	ENSPKIG00000001659	ENSPKIG00000001730	SLC25A1 (ENSPKIG00000001918)	ENSPKIG00000001980	snap29 (ENSPKIG00000002004)	PI4KA (ENSPKIG00000002055)	serpind1 (ENSPKIG00000002156)
Clupeocephala	ANCESTRAL SPECIES	214		ENSGT00940000161893	ENSGT00390000013777	ENSGT00390000012739	ENSGT00390000003948	ENSGT00390000012485.a.a	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT01100000263696	ENSGT00390000000378.d.b	ENSGT00390000003682	ENSGT00940000173670	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b
Otomorpha	ANCESTRAL SPECIES	189					ENSGT00390000003948	ENSGT00390000012485.a.a	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000160943
Clupeiformes	ANCESTRAL SPECIES	174						ENSGT00390000012485.a.a	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682.d	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000160943
Denticle herring	MODERN SPECIES	2	plekha2 (ENSDCDG00000003558)	ENSDCDG00000003618	prnprs3 (ENSDCDG00000003619)	bmp2k (ENSDCDG00000003621)	paqr3a (ENSDCDG00000003625)	antxr2a (ENSDCDG00000003631)	prdm8b (ENSDCDG00000003639)	fgf5 (ENSDCDG00000003640)	cfap299 (ENSDCDG00000003642)	bmp3 (ENSDCDG00000003643)	prkg2 (ENSDCDG00000003650)	rasgef1ba (ENSDCDG00000003667)	hip1rb (ENSDCDG00000003747)	si:ch211-51h9.6 (ENSDCDG00000003875)	mrpl40 (ENSDCDG00000003876)	acaa2 (ENSDCDG00000003889) ##22	rpl6 (ENSDCDG00000004161)	ENSDCDG00000004163	dynll1 (ENSDCDG00000004165)	polb (ENSDCDG00000004175)	enkd1 (ENSDCDG00000004168)	vdac3 (ENSDCDG00000004187)	ikbkb (ENSDCDG00000004211)	PLAT (ENSDCDG00000004238)	ENSDCDG00000004405	ENSDCDG00000004414	ENSDCDG00000004416	ENSDCDG00000004436	SLC25A1 (ENSDCDG00000004998)	RASAL1 (ENSDCDG00000005003)	ENSDCDG00000005013
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000012093	ENSCHAG00000011897	ENSCHAG00000011870	gp1bb (ENSCHAG00000011864)	ENSCHAG00000011856	ENSCHAG00000011844 ##19	ENSCHAG00000011839	ENSCHAG00000011824	ENSCHAG00000011804	septin5a (ENSCHAG00000011673)	zgc:63587 (ENSCHAG00000011285)	cdc45 (ENSCHAG00000010087)	ufd1l (ENSCHAG00000009921)	si:ch211-51h9.6 (ENSCHAG00000009892)	mrpl40 (ENSCHAG00000009884)	acaa2 (ENSCHAG00000009673) ##22	rpl6 (ENSCHAG00000009629)	dynll1 (ENSCHAG00000009605)	ENSCHAG00000009591	polb (ENSCHAG00000009325)	enkd1 (ENSCHAG00000009318)	vdac3 (ENSCHAG00000008746)	ENSCHAG00000008666	ENSCHAG00000008657	ENSCHAG00000008634	ENSCHAG00000008555	ENSCHAG00000008547	ikbkb (ENSCHAG00000007905)	ENSCHAG00000007778	ENSCHAG00000007597	ENSCHAG00000007084
Otophysi	ANCESTRAL SPECIES	74	ENSGT00940000164360.A	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000163383	ENSGT00940000155841.c.a	ENSGT00990000204366	ENSGT00940000156811.a	ENSGT00450000040324.b	ENSGT00940000157207.a.b	ENSGT00940000156902.a	ENSGT00940000153877.a.a.a	ENSGT00530000065225	ENSGT00390000012903	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000160943
Cyprinoidei	ANCESTRAL SPECIES	32	ENSGT00940000164360.A	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000163383	ENSGT00940000155841.c.a	ENSGT00990000204366	ENSGT00940000156811.a	ENSGT00450000040324.b	ENSGT00940000157207.a.b	ENSGT00940000156902.a	ENSGT00940000153877.a.a.a	ENSGT00530000065225	ENSGT00390000012903	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT01030000236969	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00390000011408	ENSGT00940000165215.a	ENSGT00940000165215.b	ENSGT00940000164759	ENSGT00940000158584	ENSGT00940000155715
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	23	fut9b.2 (ENSDARG00000058299)	fut9b.1 (ENSDARG00000067524)	lhx2b (ENSDARG00000031222)	ENSDARG00000060081	sh3glb2a (ENSDARG00000008983)	ENSDARG00000101753	EEIG1 (ENSDARG00000102566)	naif1 (ENSDARG00000062753)	slc25a25a (ENSDARG00000010572)	zdhhc12a (ENSDARG00000076632)	seta (ENSDARG00000031495)	si:ch211-51h9.7 (ENSDARG00000074720)	gle1 (ENSDARG00000043559)	si:ch211-51h9.6 (ENSDARG00000092360)	mrpl40 (ENSDARG00000043554)	acaa2 (ENSDARG00000038881) ##22	rpl6 (ENSDARG00000058451)	dynll1 (ENSDARG00000058454)	ENSDARG00000092379	polb (ENSDARG00000003749)	enkd1 (ENSDARG00000043550)	vdac3 (ENSDARG00000003695)	ikbkb (ENSDARG00000079123)	PLAT (ENSDARG00000062707)	ENSDARG00000095437	ENSDARG00000076419	ENSDARG00000090607	ENSDARG00000091618	SLC25A1 (ENSDARG00000080000)	ENSDARG00000058658	snap29 (ENSDARG00000038518)
Zebrafish	MODERN SPECIES	1108																ENSDARG00000099056 ##22
Cyprininae	ANCESTRAL SPECIES	246						ENSGT00940000164360.A.e	ENSGT00940000158540.q.b	ENSGT00940000155841.c.a.a.b	ENSGT00940000156811.a.a	ENSGT00450000040324.b.j.a	ENSGT00940000157207.a.b.b	ENSGT00530000065225	ENSGT00390000012903.d	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682.a.a	ENSGT00390000000378.d.b	ENSGT00940000173670	ENSGT01030000236969.a	ENSGT00940000156918.c	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b.e	ENSGT00940000158930.n.b	ENSGT00940000155715.tb.a	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b.a	ENSGT00390000008325.a.a	ENSGT00950000182843.a.b.l.a	ENSGT00940000158664.h	ENSGT01030000235233.a.b.a
Cyprininae_a	ANCESTRAL SPECIES	109	ENSGT00940000153612.B.e	ENSGT00940000158897.e.a.c.b	ENSGT00940000158897.e.a.d	ENSGT00390000001041	ENSGT00940000164360.A.e	ENSGT00940000158540.q.b	ENSGT00940000163383.b	ENSGT00940000155841.c.a.a.b	ENSGT00940000156811.a.a	ENSGT00450000040324.b.j.a	ENSGT00940000157207.a.b.b	ENSGT00530000065225	ENSGT00390000012903.d	ENSGT00390000002511	ENSGT00390000010239.n	ENSGT01030000234626.D ##22	ENSGT00390000003682.a.a	ENSGT00390000003682.a.b	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000173670	ENSGT01030000236969.a	ENSGT00940000156918.c	ENSGT00950000182869.e.b.g.a.b	ENSGT00950000182937.A.b.e	ENSGT00940000158930.n.b	ENSGT00940000155715.tb.a	ENSGT00950000183166.a.b.d	ENSGT00550000074856.c.b.a	ENSGT00390000008325.a.a	ENSGT00950000182843.a.b.l.a
Golden-line barbel	MODERN SPECIES	690	atp7a (ENSSGRG00000051061)	ENSSGRG00000051052	ENSSGRG00000051051	gdf9 (ENSSGRG00000051049)	nudt22 (ENSSGRG00000051048)	smyd5 (ENSSGRG00000050910)	ENSSGRG00000050903	ENSSGRG00000050902	SLC4A11 (ENSSGRG00000050900)	naif1 (ENSSGRG00000050898)	slc25a25a (ENSSGRG00000050887)	seta (ENSSGRG00000050880)	gle1 (ENSSGRG00000050813)	si:ch211-51h9.6 (ENSSGRG00000050800)	mrpl40 (ENSSGRG00000050799)	acaa2 (ENSSGRG00000050642) ##22	rpl6 (ENSSGRG00000050628)	dynll1 (ENSSGRG00000050618)	ENSSGRG00000050579	polb (ENSSGRG00000050478)	vdac3 (ENSSGRG00000050462)	ikbkb (ENSSGRG00000050385)	PLAT (ENSSGRG00000050375)	ENSSGRG00000050266	snap29 (ENSSGRG00000050265)	serpind1 (ENSSGRG00000050263)	ENSSGRG00000049823
Common carp reference	MODERN SPECIES	17	ENSCCRG00000078643	ENSCCRG00000068242	lhx2b (ENSCCRG00000048661)	ENSCCRG00000081956	ENSCCRG00000049409	ENSCCRG00000055340	sh3glb2a (ENSCCRG00000010610)	ENSCCRG00000041867	EEIG1 (ENSCCRG00000041864)	naif1 (ENSCCRG00000015730)	slc25a25a (ENSCCRG00000080316)	zdhhc12a (ENSCCRG00000041851)	seta (ENSCCRG00000015723)	gle1 (ENSCCRG00000013852)	mrpl40 (ENSCCRG00000039944)	acaa2 (ENSCCRG00000072948) ##22	rpl6 (ENSCCRG00000039880)	ENSCCRG00000059675	dynll1 (ENSCCRG00000013754)	ENSCCRG00000013750	ENSCCRG00000073114	polb (ENSCCRG00000053825)	enkd1 (ENSCCRG00000010690)	vdac3 (ENSCCRG00000062963)	ikbkb (ENSCCRG00000010485)	ENSCCRG00000010466	ENSCCRG00000060729	ENSCCRG00000080115	ENSCCRG00000075364	ENSCCRG00000075520	ENSCCRG00000042865
Goldfish	MODERN SPECIES	48	BICDL1 (ENSCARG00000006089)	rab35b (ENSCARG00000006191)	GCN1 (ENSCARG00000006341)	PXN (ENSCARG00000007618)	ctu1 (ENSCARG00000007715)	ENSCARG00000007726	ENSCARG00000007736	lhx2b (ENSCARG00000007753)	sh3glb2a (ENSCARG00000007776)	EEIG1 (ENSCARG00000008042)	naif1 (ENSCARG00000008090)	slc25a25a (ENSCARG00000008110)	seta (ENSCARG00000008460)	gle1 (ENSCARG00000008498)	si:ch211-51h9.6 (ENSCARG00000009192)	acaa2 (ENSCARG00000009205) ##22	rpl6 (ENSCARG00000009621)	dynll1 (ENSCARG00000009626)	ENSCARG00000009630	ENSCARG00000009635	polb (ENSCARG00000009643)	vdac3 (ENSCARG00000009664)	ikbkb (ENSCARG00000009718)	PLAT (ENSCARG00000009854)	ENSCARG00000009882	ENSCARG00000009883	ENSCARG00000009888	fxn (ENSCARG00000009895)	pip5k1bb (ENSCARG00000009903)	ENSCARG00000009958	unc45b (ENSCARG00000009965)
Characiphysae	ANCESTRAL SPECIES	43	ENSGT00940000164360.A.a	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000163383	ENSGT00940000155841.c.a	ENSGT00990000204366	ENSGT00940000156811.a	ENSGT00450000040324.b	ENSGT00940000157207.a.b	ENSGT00940000156902.a	ENSGT00940000153877.a.a.a	ENSGT00530000065225	ENSGT00390000012903	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000160943	ENSGT00940000158715.e	ENSGT00390000017663
Channel catfish	MODERN SPECIES	24	ENSIPUG00000020850	ENSIPUG00000020781	rer1 (ENSIPUG00000020737)	tp73 (ENSIPUG00000020714)	wrap73 (ENSIPUG00000020690)	TPRG1L (ENSIPUG00000020672)	prdm16 (ENSIPUG00000020607)	mfn2 (ENSIPUG00000020537)	ENSIPUG00000020499	ENSIPUG00000020484	ENSIPUG00000020477	ENSIPUG00000020358	snrnp200 (ENSIPUG00000020309)	vsig8b (ENSIPUG00000020301)	Mrpl40 (ENSIPUG00000020288)	acaa2 (ENSIPUG00000020272) ##22	ENSIPUG00000020259	dynll1 (ENSIPUG00000020243)	rpl6 (ENSIPUG00000020213)	DGCR6 (ENSIPUG00000020222)	Vgll4 (ENSIPUG00000020201)	GAPVD1 (ENSIPUG00000019951)	snap29 (ENSIPUG00000019884)	ENSIPUG00000018073	lhx2b (ENSIPUG00000018065)	ENSIPUG00000013360	ENSIPUG00000013305	ENSIPUG00000013286	gle1 (ENSIPUG00000013197)	seta (ENSIPUG00000013161)	naif1 (ENSIPUG00000013136)
Characiphysae_b	ANCESTRAL SPECIES	42	ENSGT00940000164360.A.a	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000163383	ENSGT00940000155841.c.a	ENSGT00990000204366	ENSGT00940000156811.a	ENSGT00450000040324.b	ENSGT00940000157207.a.b	ENSGT00940000156902.a	ENSGT00940000153877.a.a.a	ENSGT00530000065225	ENSGT00390000012903	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.a.o.b	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000173670
Characoidei	ANCESTRAL SPECIES	59	ENSGT00940000164360.A.a	ENSGT00940000158540	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000163383	ENSGT00940000155841.c.a	ENSGT00990000204366	ENSGT00940000156811.a	ENSGT00450000040324.b	ENSGT00940000157207.a.b	ENSGT00940000156902.a	ENSGT00940000153877.a.a.a	ENSGT00530000065225	ENSGT00390000012903	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b
Red-bellied piranha	MODERN SPECIES	86	ctu1 (ENSPNAG00000000363)	ENSPNAG00000007630	lhx2b (ENSPNAG00000000355)	ENSPNAG00000007621	ENSPNAG00000000342	sh3glb2a (ENSPNAG00000007607)	ENSPNAG00000007598	EEIG1 (ENSPNAG00000007595)	naif1 (ENSPNAG00000000324)	slc25a25a (ENSPNAG00000000320)	seta (ENSPNAG00000007583)	si:ch211-51h9.7 (ENSPNAG00000000315)	gle1 (ENSPNAG00000007573)	si:ch211-51h9.6 (ENSPNAG00000007569)	mrpl40 (ENSPNAG00000000310)	acaa2 (ENSPNAG00000000308) ##22	rpl6 (ENSPNAG00000007557)	dynll1 (ENSPNAG00000007553)	polb (ENSPNAG00000007551)	enkd1 (ENSPNAG00000007545)	vdac3 (ENSPNAG00000000281)	ikbkb (ENSPNAG00000000274)	PLAT (ENSPNAG00000007521)	DTX1 (ENSPNAG00000000261)	RASAL1 (ENSPNAG00000007511)	dgcr6 (ENSPNAG00000000247)	ENSPNAG00000000243
Mexicana tetra	MODERN SPECIES	21	lhx2b (ENSAMXG00000035303)	ENSAMXG00000012030	ENSAMXG00000038206	ENSAMXG00000036574	sh3glb2a (ENSAMXG00000012086)	ENSAMXG00000029716	EEIG1 (ENSAMXG00000012124)	naif1 (ENSAMXG00000039603)	slc25a25a (ENSAMXG00000042479)	zdhhc12a (ENSAMXG00000012374)	seta (ENSAMXG00000010484)	si:ch211-51h9.7 (ENSAMXG00000012480)	gle1 (ENSAMXG00000012542)	mrpl40 (ENSAMXG00000029691)	si:ch211-51h9.6 (ENSAMXG00000033396)	acaa2 (ENSAMXG00000035892) ##22	rpl6 (ENSAMXG00000012854)	dynll1 (ENSAMXG00000034358)	ENSAMXG00000024374	polb (ENSAMXG00000012972)	enkd1 (ENSAMXG00000013036)	vdac3 (ENSAMXG00000013051)	ikbkb (ENSAMXG00000013072)	PLAT (ENSAMXG00000013113)	ENSAMXG00000031840	ENSAMXG00000033070	ENSAMXG00000013138	ENSAMXG00000036289	SLC25A1 (ENSAMXG00000015817)	ENSAMXG00000039755	snap29 (ENSAMXG00000029405)
Electric eel	MODERN SPECIES	870				ENSEEEG00000014801	ENSEEEG00000014802	sh3glb2a (ENSEEEG00000014803)	ENSEEEG00000014806	EEIG1 (ENSEEEG00000014807)	naif1 (ENSEEEG00000014811)	ENSEEEG00000014829	zdhhc12a (ENSEEEG00000015088)	seta (ENSEEEG00000015089)	gle1 (ENSEEEG00000015094)	si:ch211-51h9.6 (ENSEEEG00000015174)	mrpl40 (ENSEEEG00000015175)	acaa2 (ENSEEEG00000015176) ##22	rpl6 (ENSEEEG00000015200)	ENSEEEG00000015204	dynll1 (ENSEEEG00000015208)	ENSEEEG00000015211
Euteleosteomorpha	ANCESTRAL SPECIES	177							ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000173670	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b
Protacanthopterygii	ANCESTRAL SPECIES	78	ENSGT00940000158546	ENSGT00730000113582	ENSGT00530000064873.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772.n	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000001618.s	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00940000164012.B	ENSGT00950000183049.E	ENSGT00510000050125.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	13	ENSGT00950000183076.a.b.a.c	ENSGT00510000050125.b.b.a	ENSGT00530000063113.A.r	ENSGT00940000155355.`b	ENSGT00940000159772.n	ENSGT00530000064244.b.f	ENSGT00940000159913.a.a.k.b.b	ENSGT00940000177458	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00940000164668.i	ENSGT00940000161769.b.a.x.b	ENSGT00390000009662.h	ENSGT00390000002408.s	ENSGT00390000002511	ENSGT00990000213100	ENSGT01030000234626.D.c ##22	ENSGT00390000003682.e	ENSGT00390000000378.d.b.vb	ENSGT00940000156918.i	ENSGT00950000182869.e.b.g.a.e	ENSGT00950000182937.A.b.h	ENSGT00940000158930.e	ENSGT00940000155715.nb.b	ENSGT00950000183166.a.b.e	ENSGT00550000074856.c.b.f.a	ENSGT00550000074856.c.b.f.b.a	ENSGT00950000183049.E.d	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00530000064873.b.j	ENSGT00730000113582	ENSGT00940000158546.k
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000164571	ENSGT00950000182940.b.b.e.c	ENSGT01050000244840.A.b.b.a.c	ENSGT00950000183076.a.b.a.c	ENSGT00510000050125.b.b.a	ENSGT00530000063113.A.r	ENSGT00940000155355.`b	ENSGT00940000159772.n	ENSGT00530000064244.b.f	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00940000164668.i	ENSGT00940000161769.b.a.x.b	ENSGT00390000009662.h	ENSGT00390000002408.s	ENSGT00390000002511	ENSGT01030000234626.D.c ##22	ENSGT00390000003682.e	ENSGT00390000000378.d.b.vb	ENSGT00940000156918.i	ENSGT00950000182869.e.b.g.a.e	ENSGT00950000182937.A.b.h	ENSGT00940000158930.e	ENSGT00940000155715.nb.b	ENSGT00950000183166.a.b.e	ENSGT00550000074856.c.b.f.a	ENSGT00950000183049.E.d	ENSGT00940000181029	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00530000064873.b.j	ENSGT00730000113582.b	ENSGT00940000158546.k
Salmo	ANCESTRAL SPECIES		ENSGT00940000164571	ENSGT00950000182940.b.b.e.c	ENSGT01050000244840.A.b.b.a.c	ENSGT00950000183076.a.b.a.c	ENSGT00510000050125.b.b.a	ENSGT00530000063113.A.r	ENSGT00940000155355.`b	ENSGT00940000159772.n	ENSGT00530000064244.b.f	ENSGT00940000159913.a.a.k.b.b	ENSGT00940000164668.i	ENSGT00940000161769.b.a.x.b	ENSGT00390000009662.h	ENSGT00390000002408.s	ENSGT00390000002511	ENSGT01030000234626.D.c ##22	ENSGT00390000003682.e	ENSGT00390000000378.d.b.vb	ENSGT00940000156918.i	ENSGT00950000182869.e.b.g.a.e	ENSGT00950000182937.A.b.h	ENSGT00940000158930.e	ENSGT00940000155715.nb.b	ENSGT00950000183166.a.b.e	ENSGT00550000074856.c.b.f.a	ENSGT00950000183049.E.d	ENSGT00940000181029	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00530000064873.b.j	ENSGT00730000113582.b	ENSGT00940000158546.k
River trout	MODERN SPECIES	19	F2RL2 (ENSSTUG00000048945)	iqgap2 (ENSSTUG00000043073)	ENSSTUG00000042424	ergic2 (ENSSTUG00000042117)	NSD3 (ENSSTUG00000040279)	PLPP5 (ENSSTUG00000040232)	gp1bb (ENSSTUG00000040223)	septin5a (ENSSTUG00000039468)	zgc:63587 (ENSSTUG00000038940)	cldn5a (ENSSTUG00000038912)	ENSSTUG00000038902	cdc45 (ENSSTUG00000038872)	ufd1l (ENSSTUG00000038723)	si:ch211-51h9.6 (ENSSTUG00000038700)	ENSSTUG00000038678	ENSSTUG00000038564 ##22	rpl6 (ENSSTUG00000038540)	dynll1 (ENSSTUG00000038523)	polb (ENSSTUG00000038450)	vdac3 (ENSSTUG00000038180)	ENSSTUG00000038156	PLAT (ENSSTUG00000037975)	ENSSTUG00000037957	ENSSTUG00000037716	SLC25A1 (ENSSTUG00000037225)	ssbp2a (ENSSTUG00000035787)	ENSSTUG00000035709	LETM2 (ENSSTUG00000035700)	prnprs3 (ENSSTUG00000035692)	ENSSTUG00000035689	rassf2a (ENSSTUG00000034925)
Atlantic salmon	MODERN SPECIES	16	F2RL2 (ENSSSAG00000066044)	ENSSSAG00000058130	iqgap2 (ENSSSAG00000058470)	ergi2 (ENSSSAG00000058116)	ENSSSAG00000053931	ENSSSAG00000118354	ppc1a (ENSSSAG00000053818)	ENSSSAG00000118248	gp1bb (ENSSSAG00000053815)	septin5a (ENSSSAG00000108161)	zgc:63587 (ENSSSAG00000047646)	cldn5a (ENSSSAG00000110113)	cdc45 (ENSSSAG00000047454)	ufd1l (ENSSSAG00000046858)	si:ch211-51h9.6 (ENSSSAG00000090823)	THIM (ENSSSAG00000046443) ##22	rpl6 (ENSSSAG00000046371)	dyl1 (ENSSSAG00000046308)	polb (ENSSSAG00000045460)	vdac3 (ENSSSAG00000043863)	ENSSSAG00000043744	PLAT (ENSSSAG00000042974)	ENSSSAG00000080259	ENSSSAG00000079627	slc25a1 (ENSSSAG00000041957)	ENSSSAG00000015367	ENSSSAG00000014312	ENSSSAG00000093826	ENSSSAG00000013522	rasf2 (ENSSSAG00000060434)	SLC23A2 (ENSSSAG00000009135)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000164571	ENSGT00950000182940.b.b.e.c	ENSGT00950000183076.a.b.a.c	ENSGT01050000244840.A.b.b.a.c	ENSGT00510000050125.b.b.a	ENSGT00530000063113.A.r	ENSGT00940000155355.`b	ENSGT00940000159772.n	ENSGT00530000064244.b.f	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00940000164668.i	ENSGT00940000161769.b.a.x.b	ENSGT00390000009662.h	ENSGT00390000002408.s	ENSGT00390000002511	ENSGT01030000234626.D.c ##22	ENSGT00390000003682.e	ENSGT00390000000378.d.b.vb	ENSGT00940000156918.i	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000158930.e	ENSGT00940000162822	ENSGT00950000183166.a.b.e	ENSGT00550000074856.c.b.f.a	ENSGT00950000183049.E.d	ENSGT00940000181029	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00530000064873.b.j	ENSGT00730000113582.b	ENSGT00940000158546.k	ENSGT00950000182953.C.c.e
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000164571	ENSGT00950000182940.b.b.e.c	ENSGT00950000183076.a.b.a.c	ENSGT01050000244840.A.b.b.a.c	ENSGT00510000050125.b.b.a	ENSGT00530000063113.A.r	ENSGT00940000155355.`b	ENSGT00940000159772.n	ENSGT00530000064244.b.f	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00940000164668.i	ENSGT00940000161769.b.a.x.b	ENSGT00390000009662.h	ENSGT00390000002408.s	ENSGT00390000002511	ENSGT01030000234626.D.c ##22	ENSGT00390000003682.e	ENSGT00390000000378.d.b.vb	ENSGT00940000156918.i	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000158930.e	ENSGT00940000162822	ENSGT00950000183166.a.b.e	ENSGT00550000074856.c.b.f.a	ENSGT00950000183049.E.d	ENSGT00940000181029	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00530000064873.b.j	ENSGT00730000113582.b	ENSGT00940000158546.k	ENSGT00950000182953.C.c.e
Chinook salmon	MODERN SPECIES	28	sv2ca (ENSOTSG00005009265)	iqgap2 (ENSOTSG00005009278)	F2RL2 (ENSOTSG00005015402)	ENSOTSG00005015404	ergic2 (ENSOTSG00005015406)	NSD3 (ENSOTSG00005015431)	PLPP5 (ENSOTSG00005019265)	ENSOTSG00005019266	gp1bb (ENSOTSG00005019267)	septin5a (ENSOTSG00005019269)	zgc:63587 (ENSOTSG00005019277)	cldn5a (ENSOTSG00005019383)	cdc45 (ENSOTSG00005019387)	ufd1l (ENSOTSG00005019399)	si:ch211-51h9.6 (ENSOTSG00005019401)	ENSOTSG00005019403 ##22	rpl6 (ENSOTSG00005019406)	dynll1 (ENSOTSG00005019408)	polb (ENSOTSG00005019415)	vdac3 (ENSOTSG00005019564)	PLAT (ENSOTSG00005019575)	ENSOTSG00005019722	ssbp2a (ENSOTSG00005020333)	ENSOTSG00005020334	LETM2 (ENSOTSG00005020337)	prnprs3 (ENSOTSG00005020340)	ENSOTSG00005020341	rassf2a (ENSOTSG00005020342)	SLC23A2 (ENSOTSG00005020345)	KCNIP3 (ENSOTSG00005020372)	PCNA (ENSOTSG00005020375)
Coho salmon	MODERN SPECIES	22	iqgap2 (ENSOKIG00005012731)	F2RL2 (ENSOKIG00005020616)	ENSOKIG00005020621	ergic2 (ENSOKIG00005020630)	NSD3 (ENSOKIG00005020763)	PLPP5 (ENSOKIG00005022620)	ENSOKIG00005022648	septin5a (ENSOKIG00005022688)	ENSOKIG00005022776	septin5a (ENSOKIG00005022836)	zgc:63587 (ENSOKIG00005023019)	cldn5a (ENSOKIG00005023513)	cdc45 (ENSOKIG00005023527)	ufd1l (ENSOKIG00005023581)	C22orf39 (ENSOKIG00005023705)	ENSOKIG00005023790 ##22	PLAT (ENSOKIG00005024020)	dynll1 (ENSOKIG00005024226)	polb (ENSOKIG00005024267)	vdac3 (ENSOKIG00005024644)	ENSOKIG00005024664	ENSOKIG00005024875	SLC25A1 (ENSOKIG00005028008)	ENSOKIG00005028365	ENSOKIG00005028998	LETM2 (ENSOKIG00005029028)	prnprs3 (ENSOKIG00005029061)	ENSOKIG00005029077	RASSF2 (ENSOKIG00005029088)	SLC23A2 (ENSOKIG00005029129)	ENSOKIG00005029364
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000042308	sv2ca (ENSOMYG00000059427)	iqgap2 (ENSOMYG00000042832)	F2RL2 (ENSOMYG00000046194)	ENSOMYG00000046199	ENSOMYG00000046207	ENSOMYG00000042332	ENSOMYG00000046219	gp1bb (ENSOMYG00000046227)	septin5a (ENSOMYG00000046286)	zgc:63587 (ENSOMYG00000046400)	cldn5a (ENSOMYG00000046403)	ENSOMYG00000049749	ufd1l (ENSOMYG00000046428)	si:ch211-51h9.6 (ENSOMYG00000026476)	acaa2 (ENSOMYG00000046504) ##22	rpl6 (ENSOMYG00000046537)	dynll1 (ENSOMYG00000046543)	polb (ENSOMYG00000046563)	vdac3 (ENSOMYG00000046610)	ENSOMYG00000059017	ENSOMYG00000046656	ENSOMYG00000046879	ENSOMYG00000068257	ENSOMYG00000047069	ENSOMYG00000056128	ENSOMYG00000068542	ENSOMYG00000047107	ENSOMYG00000047109	ENSOMYG00000047114	ENSOMYG00000047116
Huchen	MODERN SPECIES	324									ENSHHUG00000046912	zgc:63587 (ENSHHUG00000046917)	cldn5a (ENSHHUG00000046926)	cdc45 (ENSHHUG00000046929)	ufd1l (ENSHHUG00000046980)	ENSHHUG00000047320	ENSHHUG00000047321	ENSHHUG00000047338 ##22	rpl6 (ENSHHUG00000047446)	dynll1 (ENSHHUG00000047468)	polb (ENSHHUG00000047492)	vdac3 (ENSHHUG00000047551)	ENSHHUG00000047688	PLAT (ENSHHUG00000047705)	ENSHHUG00000047718	ENSHHUG00000047740	SLC25A1 (ENSHHUG00000048072)	ssbp2a (ENSHHUG00000048088)	LETM2 (ENSHHUG00000048355)	prnprs3 (ENSHHUG00000048361)	rassf2a (ENSHHUG00000048364)	SLC23A2 (ENSHHUG00000048372)	ENSHHUG00000048377
Salmoninae	ANCESTRAL SPECIES	77	ENSGT00390000004965.a.a	ENSGT00940000158782.d.a.f	ENSGT00950000182953.C.c.f	ENSGT00940000158546.l	ENSGT00530000064873.b.i	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00940000155355.ab	ENSGT00550000074985	ENSGT00530000064244.b.e	ENSGT00940000159913.a.a.k.a	ENSGT00940000164668.j	ENSGT00940000161769.b.a.x.a	ENSGT00390000009662.g	ENSGT00390000002408.t	ENSGT00390000010239	ENSGT01030000234626.D.d ##22	ENSGT00390000003682.f	ENSGT01100000263793	ENSGT00390000000378.d.b.wb	ENSGT00390000001618.s	ENSGT00940000156918.j	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.f	ENSGT00950000182937.A.b.g	ENSGT00940000158930.f	ENSGT00940000159038.a.a.d	ENSGT00940000162822	ENSGT00940000155715.nb.a	ENSGT00950000183166.a.b.f	ENSGT00550000074856.c.b.f.b.b	ENSGT00940000164012.B
Salmoninae_a	ANCESTRAL SPECIES	31	ENSGT00940000158782.d.a.f	ENSGT00950000182953.C.c.f	ENSGT00940000158546.l	ENSGT00730000113582.a	ENSGT00530000064873.b.i	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00940000155355.ab	ENSGT00550000074985	ENSGT00530000064244.b.e	ENSGT00940000159913.a.a.k.a	ENSGT00940000164668.j	ENSGT00940000161769.b.a.x.a	ENSGT00390000009662.g	ENSGT00390000002408.t	ENSGT00390000010239	ENSGT01030000234626.D.d ##22	ENSGT00390000003682.f	ENSGT00390000001618.s	ENSGT00390000000378.d.b.wb	ENSGT00940000156918.j	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.f	ENSGT00950000182937.A.b.g	ENSGT00940000158930.f	ENSGT00940000159038.a.a.d	ENSGT00940000162822	ENSGT00950000183166.a.b.f	ENSGT00550000074856.c.b.f.b.b	ENSGT00940000164012.B	ENSGT00950000183049.E.c	ENSGT00510000050125.b.b.b
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00390000004965.a.a	ENSGT00940000158782.d.a.f	ENSGT00950000182953.C.c.f	ENSGT00940000158546.l	ENSGT00730000113582.a	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00940000155355.ab	ENSGT00550000074985	ENSGT00530000064244.b.e	ENSGT00940000159913.a.a.k.a	ENSGT00940000164668.j	ENSGT00940000161769.b.a.x.a	ENSGT00390000009662.g	ENSGT00390000002408.t	ENSGT00390000010239	ENSGT01030000234626.D.d ##22	ENSGT00390000003682.f	ENSGT00390000000378.d.b.wb	ENSGT00390000001618.s	ENSGT00940000156918.j	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.f	ENSGT00950000182937.A.b.g	ENSGT00940000158930.f	ENSGT00940000159038.a.a.d	ENSGT00950000183166.a.b.f	ENSGT00550000074856.c.b.f.b.b	ENSGT00940000164012.B	ENSGT00950000183049.E.c	ENSGT00510000050125.b.b.b	ENSGT01050000244840.A.a.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00390000004965.a.a	ENSGT00940000158782.d.a.f	ENSGT00950000182953.C.c.f	ENSGT00940000158546.l	ENSGT00730000113582.a	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00940000155355.ab	ENSGT00550000074985	ENSGT00530000064244.b.e	ENSGT00940000159913.a.a.k.a	ENSGT00940000164668.j	ENSGT00940000161769.b.a.x.a	ENSGT00390000009662.g	ENSGT00390000002408.t	ENSGT00390000010239	ENSGT01030000234626.D.d ##22	ENSGT00390000003682.f	ENSGT00390000001618.s	ENSGT00390000000378.d.b.wb	ENSGT00940000156918.j	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.f	ENSGT00950000182937.A.b.h	ENSGT00950000182937.A.b.g	ENSGT00940000158930.f	ENSGT00940000159038.a.a.d	ENSGT00950000183166.a.b.f	ENSGT00550000074856.c.b.e	ENSGT00940000164012.B	ENSGT00950000183049.E.c	ENSGT00510000050125.b.b.b
Coho salmon	MODERN SPECIES	28	ENSOKIG00005018640	SLC23A2 (ENSOKIG00005018664)	zgc:63587 (ENSOKIG00005018832)	rassf2a (ENSOKIG00005018913)	ENSOKIG00005019013	ENSOKIG00005019018	ENSOKIG00005019127	dhx37 (ENSOKIG00005020346)	gp1bb (ENSOKIG00005020429)	ENSOKIG00005020434	septin5a (ENSOKIG00005020479)	cldn5a (ENSOKIG00005020765)	cdc45 (ENSOKIG00005020780)	ufd1l (ENSOKIG00005020942)	mrpl40 (ENSOKIG00005021192)	ACAA2 (ENSOKIG00005021234) ##22	ENSOKIG00005021362	ENSOKIG00005030971	dynll1 (ENSOKIG00005030993)	polb (ENSOKIG00005031009)	enkd1 (ENSOKIG00005031069)	ikbkb (ENSOKIG00005031084)	PLAT (ENSOKIG00005031157)	MYL11 (ENSOKIG00005031681)	ENSOKIG00005031734	SLC25A1 (ENSOKIG00005032108)	ENSOKIG00005032326	ssbp2a (ENSOKIG00005032358)	f2r (ENSOKIG00005032517)	iqgap2 (ENSOKIG00005033003)	F2RL2 (ENSOKIG00005043111)
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005006554	SLC23A2 (ENSOTSG00005006557)	zgc:63587 (ENSOTSG00005006569)	rassf2a (ENSOTSG00005006573)	ENSOTSG00005006579	ENSOTSG00005006580	ENSOTSG00005006590	dhx37 (ENSOTSG00005009966)	gp1bb (ENSOTSG00005009971)	septin5a (ENSOTSG00005009975)	ENSOTSG00005010435	cldn5a (ENSOTSG00005010436)	cdc45 (ENSOTSG00005010438)	ufd1l (ENSOTSG00005010461)	mrpl40 (ENSOTSG00005011128)	ACAA2 (ENSOTSG00005011131) ##22	rpl6 (ENSOTSG00005011140)	dynll1 (ENSOTSG00005011141)	ENSOTSG00005011144	ENSOTSG00005011147	enkd1 (ENSOTSG00005011148)	vdac3 (ENSOTSG00005011150)	ENSOTSG00005011157	ENSOTSG00005011158	GPR156 (ENSOTSG00005011159)	LRRC58 (ENSOTSG00005011160)	fstl1b (ENSOTSG00005011162)	ENSOTSG00005011554	ikbkb (ENSOTSG00005011560)	PLAT (ENSOTSG00005011584)	MYL11 (ENSOTSG00005011585)
Salmo	ANCESTRAL SPECIES	19	ENSGT00390000004965.a.a	ENSGT00940000158782.d.a.f	ENSGT00950000182953.C.c.f	ENSGT00940000158546.l	ENSGT00530000064873.b.i	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00940000155355.ab	ENSGT00550000074985	ENSGT00530000064244.b.e	ENSGT00940000159913.a.a.k.a	ENSGT00940000164668.j	ENSGT00940000161769.b.a.x.a	ENSGT00390000009662.g	ENSGT00390000002408.t	ENSGT00390000010239	ENSGT01030000234626.D.d ##22	ENSGT00390000003682.f	ENSGT00390000001618.s	ENSGT00390000000378.d.b.wb	ENSGT00940000156918.j	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.f	ENSGT00950000182937.A.b.g	ENSGT00940000158930.f	ENSGT00940000159038.a.a.d	ENSGT00940000162822.c	ENSGT00950000183166.a.b.f	ENSGT00550000074856.c.b.f.b.b	ENSGT00940000164012.B	ENSGT00950000183049.E.c	ENSGT00510000050125.b.b.b
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000060516	ENSSSAG00000120772	ENSSSAG00000060303	ENSSSAG00000060254	ENSSSAG00000106188	ENSSSAG00000055534	ENSSSAG00000095888	dhx37 (ENSSSAG00000053501)	gp1bb (ENSSSAG00000084006)	septin5a (ENSSSAG00000052786)	zgc:63587 (ENSSSAG00000047321)	cldn5a (ENSSSAG00000120089)	cdc45 (ENSSSAG00000047205)	ufd1l (ENSSSAG00000046704)	mrpl40 (ENSSSAG00000089945)	THIM (ENSSSAG00000046088) ##22	rpl6 (ENSSSAG00000046058)	ENSSSAG00000046044	dynll1 (ENSSSAG00000046028)	polb (ENSSSAG00000045962)	enkd1 (ENSSSAG00000045950)	ENSSSAG00000045940	vdac3 (ENSSSAG00000045635)	ikbkb (ENSSSAG00000045104)	ENSSSAG00000080273	ENSSSAG00000080266	ENSSSAG00000116451	ENSSSAG00000042487	ENSSSAG00000118287	ENSSSAG00000091439	ENSSSAG00000079540
River trout	MODERN SPECIES	39	zgc:152830 (ENSSTUG00000049037)	PCNA (ENSSTUG00000049031)	ENSSTUG00000049006	ENSSTUG00000048922	rassf2a (ENSSTUG00000048899)	prnprs3 (ENSSTUG00000048896)	ENSSTUG00000048892	ENSSTUG00000048701	dhx37 (ENSSTUG00000048625)	septin5a (ENSSTUG00000048590)	zgc:63587 (ENSSTUG00000048580)	cldn5a (ENSSTUG00000048571)	cdc45 (ENSSTUG00000048528)	ufd1l (ENSSTUG00000048168)	mrpl40 (ENSSTUG00000048152)	ACAA2 (ENSSTUG00000048043) ##22	rpl6 (ENSSTUG00000048032)	ENSSTUG00000048026	dynll1 (ENSSTUG00000048021)	polb (ENSSTUG00000047986)	enkd1 (ENSSTUG00000047975)	ENSSTUG00000047963	ENSSTUG00000047958	vdac3 (ENSSTUG00000047951)	ikbkb (ENSSTUG00000047760)	PLAT (ENSSTUG00000047668)	ENSSTUG00000047645	ENSSTUG00000046488	SLC25A1 (ENSSTUG00000046375)	ENSSTUG00000046352	ENSSTUG00000046350
Huchen	MODERN SPECIES	304	PCNA (ENSHHUG00000020638)	ENSHHUG00000020677	SLC23A2 (ENSHHUG00000020711)	ENSHHUG00000020772	ENSHHUG00000020774	ENSHHUG00000020784	ENSHHUG00000020797	dhx37 (ENSHHUG00000021069)	gp1bb (ENSHHUG00000021149)	septin5a (ENSHHUG00000021157)	zgc:63587 (ENSHHUG00000021279)	cldn5a (ENSHHUG00000021323)	cdc45 (ENSHHUG00000021337)	ufd1l (ENSHHUG00000021408)	mrpl40 (ENSHHUG00000021819)	ACAA2 (ENSHHUG00000021845) ##22	rpl6 (ENSHHUG00000021934)	ENSHHUG00000021962	dynll1 (ENSHHUG00000021966)	ENSHHUG00000021972	enkd1 (ENSHHUG00000021976)	vdac3 (ENSHHUG00000021989)	ikbkb (ENSHHUG00000022121)	PLAT (ENSHHUG00000022402)	mylpfb (ENSHHUG00000022413)	ENSHHUG00000022416	ENSHHUG00000022440	SLC25A1 (ENSHHUG00000022500)	ENSHHUG00000022525	ssbp2a (ENSHHUG00000022534)	ENSHHUG00000022663
Northern pike	MODERN SPECIES	12	rassf2a (ENSELUG00000008747)	ENSELUG00000008777	prnprs3 (ENSELUG00000008789)	LETM2 (ENSELUG00000008803)	NSD3 (ENSELUG00000008901)	PLPP5 (ENSELUG00000008938)	dhx37 (ENSELUG00000008988)	gp1bb (ENSELUG00000009007)	septin5a (ENSELUG00000009028)	zgc:63587 (ENSELUG00000009060)	cldn5a (ENSELUG00000009084)	cdc45 (ENSELUG00000009130)	ufd1 (ENSELUG00000009207)	si:ch211-51h9.6 (ENSELUG00000009233)	mrpl40 (ENSELUG00000030802)	acaa2 (ENSELUG00000009312) ##22	rpl6 (ENSELUG00000009354)	dynll1 (ENSELUG00000009336)	ENSELUG00000009356	polb (ENSELUG00000009370)	enkd1 (ENSELUG00000009383)	vdac3 (ENSELUG00000009417)	ikbkb (ENSELUG00000009472)	PLAT (ENSELUG00000009537)	ENSELUG00000009557	CLTCL1 (ENSELUG00000009702)	SLC25A1 (ENSELUG00000009778)	ssbp2a (ENSELUG00000009831)	ENSELUG00000027802	ENSELUG00000033572	f2r (ENSELUG00000009872)
Acanthomorphata	ANCESTRAL SPECIES	13	ENSGT00730000113582	ENSGT00530000064873.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069
Cod	MODERN SPECIES	19	ENSGMOG00000013689	ENSGMOG00000013678	ENSGMOG00000013663	ENSGMOG00000025212	ENSGMOG00000013605	cdc45 (ENSGMOG00000013587)	cldn5a (ENSGMOG00000020365)	zgc:63587 (ENSGMOG00000013563)	septin5a (ENSGMOG00000004350)	gp1bb (ENSGMOG00000036581)	dhx37 (ENSGMOG00000011509)	ENSGMOG00000011533	ENSGMOG00000028132	si:ch211-51h9.6 (ENSGMOG00000011540)	mrpl40 (ENSGMOG00000029279)	acaa2 (ENSGMOG00000011548) ##22	rpl6 (ENSGMOG00000011557)	ENSGMOG00000014803	dynll1 (ENSGMOG00000030002)	polb (ENSGMOG00000011569)	enkd1 (ENSGMOG00000011577)	vdac3 (ENSGMOG00000011585)	ikbkb (ENSGMOG00000011593)	ENSGMOG00000011611	ENSGMOG00000033593	ENSGMOG00000011629	ENSGMOG00000011652	ENSGMOG00000024284	snap29 (ENSGMOG00000011666)	serpind1 (ENSGMOG00000011703)	pi4kab (ENSGMOG00000011672)
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00730000113582	ENSGT00530000064873.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005006628	ENSMMDG00005006631	prnprs3 (ENSMMDG00005006633)	LETM2 (ENSMMDG00005006635)	NSD3 (ENSMMDG00005006659)	plpp5 (ENSMMDG00005007923)	cdc45 (ENSMMDG00005007932)	cldn5a (ENSMMDG00005007978)	zgc:63587 (ENSMMDG00005008042)	septin5a (ENSMMDG00005010197)	ENSMMDG00005010256	dhx37 (ENSMMDG00005010267)	ufd1l (ENSMMDG00005010639)	si:ch211-51h9.6 (ENSMMDG00005010670)	mrpl40 (ENSMMDG00005010673)	ACAA2 (ENSMMDG00005010683) ##22	dynll1 (ENSMMDG00005011046)	polb (ENSMMDG00005011072)	enkd1 (ENSMMDG00005011085)	ACAA2 (ENSMMDG00005011088) ##22	rpl6 (ENSMMDG00005011098)	ENSMMDG00005011105	enkd1 (ENSMMDG00005011106)	vdac3 (ENSMMDG00005011111)	ikbkb (ENSMMDG00005011131)	PLAT (ENSMMDG00005011138)	CLTCL1 (ENSMMDG00005011311)	SLC25A1 (ENSMMDG00005017083)	ENSMMDG00005017085	snap29 (ENSMMDG00005017086)	pi4kab (ENSMMDG00005017158)
Pinecone sodierfish	MODERN SPECIES	23	NSD3 (ENSMMDG00005006659)	plpp5 (ENSMMDG00005007923)	cdc45 (ENSMMDG00005007932)	cldn5a (ENSMMDG00005007978)	zgc:63587 (ENSMMDG00005008042)	septin5a (ENSMMDG00005010197)	ENSMMDG00005010256	dhx37 (ENSMMDG00005010267)	ufd1l (ENSMMDG00005010639)	si:ch211-51h9.6 (ENSMMDG00005010670)	mrpl40 (ENSMMDG00005010673)	ACAA2 (ENSMMDG00005010683) ##22	dynll1 (ENSMMDG00005011046)	polb (ENSMMDG00005011072)	enkd1 (ENSMMDG00005011085)	ACAA2 (ENSMMDG00005011088) ##22	rpl6 (ENSMMDG00005011098)	ENSMMDG00005011105	enkd1 (ENSMMDG00005011106)	vdac3 (ENSMMDG00005011111)	ikbkb (ENSMMDG00005011131)	PLAT (ENSMMDG00005011138)	CLTCL1 (ENSMMDG00005011311)	SLC25A1 (ENSMMDG00005017083)	ENSMMDG00005017085	snap29 (ENSMMDG00005017086)	pi4kab (ENSMMDG00005017158)	serpind1 (ENSMMDG00005017472)	HIC2 (ENSMMDG00005017473)	PRADC1 (ENSMMDG00005017474)	ENSMMDG00005017476
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00730000113582	ENSGT00530000064873.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069
Tiger tail seahorse	MODERN SPECIES	67	atoh1a (ENSHCOG00000007853)	smarcad1a (ENSHCOG00000007848)	prf1.5 (ENSHCOG00000007838)	mpeg1.2 (ENSHCOG00000007828)	ENSHCOG00000007823	ENSHCOG00000007815	tspan36 (ENSHCOG00000007807)	mapk4 (ENSHCOG00000007796)	me2 (ENSHCOG00000007780)	elac1 (ENSHCOG00000007752)	BMPR1B (ENSHCOG00000007740)	pdlim5a (ENSHCOG00000007720)	ENSHCOG00000007708	ENSHCOG00000007695	ENSHCOG00000007681	acaa2 (ENSHCOG00000007671) ##22	rpl6 (ENSHCOG00000007651)	dynll1 (ENSHCOG00000007644)	ENSHCOG00000007635	polb (ENSHCOG00000007626)	enkd1 (ENSHCOG00000007583)	vdac3 (ENSHCOG00000007575)	ikbkb (ENSHCOG00000007550)	PLAT (ENSHCOG00000007503)	CLTCL1 (ENSHCOG00000007371)	SLC25A1 (ENSHCOG00000007258)	ENSHCOG00000007253	ENSHCOG00000007243	snap29 (ENSHCOG00000007224)	ENSHCOG00000007194	serpind1 (ENSHCOG00000007153)
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000173670	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978
Climbing perch	MODERN SPECIES	22	ENSATEG00000020167	ENSATEG00000020177	ENSATEG00000020182	LETM2 (ENSATEG00000020187)	ENSATEG00000020222	plpp5 (ENSATEG00000020352)	cdc45 (ENSATEG00000020433)	cldn5a (ENSATEG00000020491)	zgc:63587 (ENSATEG00000020519)	septin5a (ENSATEG00000020583)	gp1bb (ENSATEG00000028591)	dhx37 (ENSATEG00000020638)	ENSATEG00000020712	si:ch211-51h9.6 (ENSATEG00000029168)	mrpl40 (ENSATEG00000020753)	acaa2 (ENSATEG00000020766) ##22	rpl6 (ENSATEG00000025793)	ENSATEG00000027310	dynll1 (ENSATEG00000029579)	polb (ENSATEG00000020803)	enkd1 (ENSATEG00000020824)	vdac3 (ENSATEG00000025440)	ikbkb (ENSATEG00000020886)	ENSATEG00000020915	ENSATEG00000020929	ENSATEG00000020957	ENSATEG00000021046	ENSATEG00000029495	snap29 (ENSATEG00000021079)	pi4kab (ENSATEG00000021117)	serpind1 (ENSATEG00000021178)
Siamese fighting fish	MODERN SPECIES	20	SLC23A2 (ENSBSLG00000008063)	rassf2a (ENSBSLG00000008349)	ENSBSLG00000008394	ENSBSLG00000008404	LETM2 (ENSBSLG00000008436)	NSD3 (ENSBSLG00000008531)	plpp5 (ENSBSLG00000010262)	cldn5a (ENSBSLG00000010582)	zgc:63587 (ENSBSLG00000010761)	septin5a (ENSBSLG00000011215)	gp1bb (ENSBSLG00000011427)	dhx37 (ENSBSLG00000011431)	ufd1l (ENSBSLG00000011489)	si:ch211-51h9.6 (ENSBSLG00000011539)	mrpl40 (ENSBSLG00000011548)	acaa2 (ENSBSLG00000011561) ##22	rpl6 (ENSBSLG00000012069)	dynll1 (ENSBSLG00000012103)	polb (ENSBSLG00000012161)	enkd1 (ENSBSLG00000012120)	vdac3 (ENSBSLG00000012194)	ikbkb (ENSBSLG00000012342)	PLAT (ENSBSLG00000012684)	ENSBSLG00000012705	CLTCL1 (ENSBSLG00000012713)	SLC25A1 (ENSBSLG00000013686)	ENSBSLG00000013875	snap29 (ENSBSLG00000013879)	pi4kab (ENSBSLG00000013900)	serpind1 (ENSBSLG00000014355)	hic1l (ENSBSLG00000014367)
Zig-zag eel	MODERN SPECIES	23	ENSMAMG00000014843	ENSMAMG00000014837	ENSMAMG00000014833	LETM2 (ENSMAMG00000014800)	ENSMAMG00000014657	plpp5 (ENSMAMG00000014619)	cdc45 (ENSMAMG00000014559)	cldn5a (ENSMAMG00000026747)	zgc:63587 (ENSMAMG00000014467)	septin5a (ENSMAMG00000014426)	gp1bb (ENSMAMG00000014408)	dhx37 (ENSMAMG00000014318)	ENSMAMG00000014272	si:ch211-51h9.6 (ENSMAMG00000014259)	mrpl40 (ENSMAMG00000014249)	acaa2 (ENSMAMG00000014229) ##22	rpl6 (ENSMAMG00000014219)	dynll1 (ENSMAMG00000026728)	ENSMAMG00000025919	polb (ENSMAMG00000014133)	enkd1 (ENSMAMG00000014116)	vdac3 (ENSMAMG00000014082)	ikbkb (ENSMAMG00000014045)	ENSMAMG00000014017	ENSMAMG00000013857	ENSMAMG00000013831	ENSMAMG00000013809	snap29 (ENSMAMG00000013707)	serpind1 (ENSMAMG00000013633)	pi4kab (ENSMAMG00000013495)	ENSMAMG00000013476
Carangaria	ANCESTRAL SPECIES	9	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00650000094724	ENSGT00940000155355.cb	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682.h	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000162822	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Seriola	ANCESTRAL SPECIES	40				ENSGT00390000017970.f.a	ENSGT00940000164450.a	ENSGT00940000155640.a	ENSGT00940000178067.b	ENSGT00940000178067.a	ENSGT00940000154702.b	ENSGT00940000156044	ENSGT00970000193421.C.a.jc	ENSGT00390000018226	ENSGT00390000013287	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682.h	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Yellowtail amberjack	MODERN SPECIES	3029				ENSSLDG00000010083	zgc:114041 (ENSSLDG00000010046)	jak2b (ENSSLDG00000009968)	ENSSLDG00000009933	ENSSLDG00000009917	ENSSLDG00000009888	aacs (ENSSLDG00000009794)	AP3S1 (ENSSLDG00000009752)	cdo1 (ENSSLDG00000009729)	ENSSLDG00000009708	si:ch211-51h9.6 (ENSSLDG00000009683)	mrpl40 (ENSSLDG00000009671)	acaa2 (ENSSLDG00000009631) ##22	ENSSLDG00000009589	rpl6 (ENSSLDG00000009577)	dynll1 (ENSSLDG00000009562)	ENSSLDG00000009544	polb (ENSSLDG00000009488)	enkd1 (ENSSLDG00000009419)	vdac3 (ENSSLDG00000009373)	ikbkb (ENSSLDG00000009307)	PLAT (ENSSLDG00000009240)	ENSSLDG00000009218	CLTCL1 (ENSSLDG00000009130)	SLC25A1 (ENSSLDG00000009078)	ENSSLDG00000009052	snap29 (ENSSLDG00000009025)	serpind1 (ENSSLDG00000008993)
Greater amberjack	MODERN SPECIES	175		ENSSDUG00000023088	zgc:114041 (ENSSDUG00000023083)	jak2b (ENSSDUG00000023068)	ENSSDUG00000023064	ENSSDUG00000023060	ENSSDUG00000023059	ENSSDUG00000023050	aacs (ENSSDUG00000023028)	AP3S1 (ENSSDUG00000023019)	cdo1 (ENSSDUG00000023015)	ENSSDUG00000023006	ENSSDUG00000023001	si:ch211-51h9.6 (ENSSDUG00000022999)	mrpl40 (ENSSDUG00000022994)	acaa2 (ENSSDUG00000022985) ##22	dynll1 (ENSSDUG00000022983)	ENSSDUG00000022980	rpl6 (ENSSDUG00000022976)	polb (ENSSDUG00000022962)	enkd1 (ENSSDUG00000022958)	vdac3 (ENSSDUG00000022952)	ikbkb (ENSSDUG00000022942)	PLAT (ENSSDUG00000022935)	ENSSDUG00000022925	CLTCL1 (ENSSDUG00000022890)	SLC25A1 (ENSSDUG00000022882)	ENSSDUG00000022876	snap29 (ENSSDUG00000022863)	serpind1 (ENSSDUG00000022851)	pi4kab (ENSSDUG00000022824)
Barramundi perch	MODERN SPECIES	9	ENSLCAG00010003777	prnprs3 (ENSLCAG00010003774)	prnprs3 (ENSLCAG00010003773)	LETM2 (ENSLCAG00010003769)	NSD3 (ENSLCAG00010003573)	plpp5 (ENSLCAG00010003491)	cdc45 (ENSLCAG00010003255)	cldn5a (ENSLCAG00010003207)	zgc:63587 (ENSLCAG00010003198)	septin5a (ENSLCAG00010003150)	gp1bb (ENSLCAG00010003139)	dhx37 (ENSLCAG00010003086)	ufd1l (ENSLCAG00010003037)	si:ch211-51h9.6 (ENSLCAG00010003030)	mrpl40 (ENSLCAG00010003027)	acaa2 (ENSLCAG00010003019) ##22	rpl6 (ENSLCAG00010003013)	ENSLCAG00010003009	dynll1 (ENSLCAG00010003001)	enkd1 (ENSLCAG00010002990)	vdac3 (ENSLCAG00010002979)	ikbkb (ENSLCAG00010002901)	PLAT (ENSLCAG00010002870)	ENSLCAG00010002866	CLTCL1 (ENSLCAG00010002180)	SLC25A1 (ENSLCAG00010001907)	ENSLCAG00010001893	snap29 (ENSLCAG00010001891)	serpind1 (ENSLCAG00010001884)	pi4kab (ENSLCAG00010001524)	hic1l (ENSLCAG00010001402)
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b.g	ENSGT00950000183166.a.b.h	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Turbot	MODERN SPECIES	21	ENSSMAG00000005936	ENSSMAG00000005946	ENSSMAG00000005949	LETM2 (ENSSMAG00000005953)	ENSSMAG00000005965	plpp5 (ENSSMAG00000006011)	cdc45 (ENSSMAG00000006027)	cldn5a (ENSSMAG00000006109)	zgc:63587 (ENSSMAG00000006113)	septin5a (ENSSMAG00000006148)	gp1bb (ENSSMAG00000006282)	dhx37 (ENSSMAG00000006189)	ENSSMAG00000006297	si:ch211-51h9.6 (ENSSMAG00000006331)	mrpl40 (ENSSMAG00000006340)	acaa2 (ENSSMAG00000006346) ##22	rpl6 (ENSSMAG00000006381)	dynll1 (ENSSMAG00000021875)	ENSSMAG00000033617	ENSSMAG00000006417	dynll1 (ENSSMAG00000023697)	ENSSMAG00000006531	dynll1 (ENSSMAG00000023229)	polb (ENSSMAG00000006536)	enkd1 (ENSSMAG00000006585)	vdac3 (ENSSMAG00000006594)	ikbkb (ENSSMAG00000006624)	ENSSMAG00000006680	ENSSMAG00000006744	ENSSMAG00000006778	ENSSMAG00000006864
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	prnprs3 (ENSCSEG00000019527)	prnprs3 (ENSCSEG00000019531)	LETM2 (ENSCSEG00000019538)	NSD3 (ENSCSEG00000019551)	plpp5 (ENSCSEG00000019594)	cdc45 (ENSCSEG00000019603)	cldn5a (ENSCSEG00000019622)	zgc:63587 (ENSCSEG00000019626)	septin5a (ENSCSEG00000019641)	gp1bb (ENSCSEG00000019724)	dhx37 (ENSCSEG00000019728)	tspan7 (ENSCSEG00000019743)	ufd1l (ENSCSEG00000019744)	si:ch211-51h9.6 (ENSCSEG00000019749)	mrpl40 (ENSCSEG00000019750)	ACAA2 (ENSCSEG00000019758) ##22	rpl6 (ENSCSEG00000019765)	ENSCSEG00000019768	dynll1 (ENSCSEG00000019770)	polb (ENSCSEG00000019776)	enkd1 (ENSCSEG00000019787)	vdac3 (ENSCSEG00000019795)	ikbkb (ENSCSEG00000019800)	PLAT (ENSCSEG00000019822)	CLTCL1 (ENSCSEG00000019849)	ENSCSEG00000019856	SLC25A1 (ENSCSEG00000019860)	ENSCSEG00000019872	snap29 (ENSCSEG00000019875)	ENSCSEG00000019878	pi4kab (ENSCSEG00000019881)
Tongue sole	MODERN SPECIES	397	sema6a (ENSCSEG00000012926)	ENSCSEG00000012922	foxn4 (ENSCSEG00000012913)	ENSCSEG00000012876	ENSCSEG00000012866	gal3st1a (ENSCSEG00000012531)	lztr1 (ENSCSEG00000012466)	cldn26 (ENSCSEG00000012456)	RABL6 (ENSCSEG00000012430)	TRAF2 (ENSCSEG00000012375)	ENSCSEG00000012344	SET (ENSCSEG00000012321)	ENSCSEG00000012303	ENSCSEG00000012299	mrpl40 (ENSCSEG00000012296)	ENSCSEG00000012274 ##22	ENSCSEG00000012266	rpl6 (ENSCSEG00000012238)	dynll1 (ENSCSEG00000012258)	ENSCSEG00000012227	SLC25A1 (ENSCSEG00000012186)	ENSCSEG00000012177	serpind1 (ENSCSEG00000012172)	ctsla (ENSCSEG00000012140)	ENSCSEG00000012137	ENSCSEG00000012130	ENSCSEG00000012125	ENSCSEG00000012084	ENSCSEG00000012067	ENSCSEG00000012058	araf (ENSCSEG00000012037)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000155855	ENSGT01030000234574.B.c.b.a.a.b	ENSGT00940000161682	ENSGT00950000182787.E.d.e.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00390000013777	ENSGT00390000012739	ENSGT00390000003948	ENSGT00390000012485.a.a	ENSGT00940000156808	ENSGT00940000156991.a.b	ENSGT00390000010398.B	ENSGT00940000158064
Tetraodon	MODERN SPECIES	3	fgf10b (ENSTNIG00000015936)	ENSTNIG00000015935	agpat9l (ENSTNIG00000015934)	myl7 (ENSTNIG00000015933)	gck (ENSTNIG00000015932)	LETM2 (ENSTNIG00000015931)	NSD3 (ENSTNIG00000015930)	plpp5 (ENSTNIG00000015929)	cdc45 (ENSTNIG00000015928)	cldn5a (ENSTNIG00000001355)	zgc:63587 (ENSTNIG00000015927)	septin5a (ENSTNIG00000015926)	dhx37 (ENSTNIG00000015925)	dynll1 (ENSTNIG00000015924)	ufd1l (ENSTNIG00000015923)	acaa2 (ENSTNIG00000015922) ##22	rpl6 (ENSTNIG00000015921)	dynll1 (ENSTNIG00000015920)	polb (ENSTNIG00000015919)	vdac3 (ENSTNIG00000015918)	ikbkb (ENSTNIG00000015917)	PLAT (ENSTNIG00000015916)	thoc5 (ENSTNIG00000015915)	tfip11 (ENSTNIG00000015914)	srrd (ENSTNIG00000015913)	ENSTNIG00000015912	DDHD2 (ENSTNIG00000015911)	ENSTNIG00000015910	plekha2 (ENSTNIG00000015909)	ENSTNIG00000015908	TPCN1 (ENSTNIG00000015907)
Fugu	MODERN SPECIES	13	fgf10b (ENSTRUG00000016593)	ENSTRUG00000016570	agpat9l (ENSTRUG00000024175)	myl7 (ENSTRUG00000016554)	gck (ENSTRUG00000016548)	LETM2 (ENSTRUG00000016542)	NSD3 (ENSTRUG00000016530)	plpp5 (ENSTRUG00000024109)	cdc45 (ENSTRUG00000016499)	cldn5a (ENSTRUG00000016497)	zgc:63587 (ENSTRUG00000016492)	septin5a (ENSTRUG00000016478)	ufd1l (ENSTRUG00000016457)	si:ch211-51h9.6 (ENSTRUG00000031049)	mrpl40 (ENSTRUG00000025904)	acaa2 (ENSTRUG00000016446) ##22	rpl6 (ENSTRUG00000016438)	dynll1 (ENSTRUG00000016464)	polb (ENSTRUG00000016417)	enkd1 (ENSTRUG00000016411)	vdac3 (ENSTRUG00000016407)	ikbkb (ENSTRUG00000016393)	PLAT (ENSTRUG00000016380)	thoc5 (ENSTRUG00000016363)	tfip11 (ENSTRUG00000016348)	srrd (ENSTRUG00000016347)	ENSTRUG00000016322	DDHD2 (ENSTRUG00000016304)	ENSTRUG00000023127	plekha2 (ENSTRUG00000020848)	ENSTRUG00000020883
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664
Ballan wrasse	MODERN SPECIES	207				ENSLBEG00000025719	NSD3 (ENSLBEG00000025674)	plpp5 (ENSLBEG00000025641)	cdc45 (ENSLBEG00000025547)	ENSLBEG00000025509	zgc:63587 (ENSLBEG00000025452)	septin5a (ENSLBEG00000025389)	gp1bb (ENSLBEG00000025362)	dhx37 (ENSLBEG00000025303)	ufd1l (ENSLBEG00000025256)	si:ch211-51h9.6 (ENSLBEG00000025233)	mrpl40 (ENSLBEG00000025203)	acaa2 (ENSLBEG00000025150) ##22	dynll1 (ENSLBEG00000025118)	rpl6 (ENSLBEG00000025101)	ENSLBEG00000025084	polb (ENSLBEG00000025040)	enkd1 (ENSLBEG00000025001)	vdac3 (ENSLBEG00000024957)	ikbkb (ENSLBEG00000024869)	PLAT (ENSLBEG00000024742)	ENSLBEG00000024675	ENSLBEG00000024657	CLTCL1 (ENSLBEG00000024587)	SLC25A1 (ENSLBEG00000024542)	ENSLBEG00000024511	snap29 (ENSLBEG00000024476)	ENSLBEG00000024452
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00390000010435.A
Perciformes	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Pike perch	MODERN SPECIES	2	ENSSLUG00000015001	prnprs3 (ENSSLUG00000014996)	prnprs3 (ENSSLUG00000014991)	LETM2 (ENSSLUG00000014988)	NSD3 (ENSSLUG00000013768)	plpp5 (ENSSLUG00000013664)	cdc45 (ENSSLUG00000012201)	cldn5a (ENSSLUG00000012140)	zgc:63587 (ENSSLUG00000011777)	septin5a (ENSSLUG00000011717)	gp1bb (ENSSLUG00000011709)	dhx37 (ENSSLUG00000011645)	ufd1l (ENSSLUG00000011212)	si:ch211-51h9.6 (ENSSLUG00000011186)	mrpl40 (ENSSLUG00000011181)	acaa2 (ENSSLUG00000011148) ##22	rpl6 (ENSSLUG00000011142)	ENSSLUG00000011141	dynll1 (ENSSLUG00000011140)	polb (ENSSLUG00000011132)	enkd1 (ENSSLUG00000011125)	vdac3 (ENSSLUG00000011105)	ikbkb (ENSSLUG00000010875)	PLAT (ENSSLUG00000010821)	CLTCL1 (ENSSLUG00000004507)	SLC25A1 (ENSSLUG00000003990)	ENSSLUG00000003975	snap29 (ENSSLUG00000003973)	serpind1 (ENSSLUG00000003967)	pi4kab (ENSSLUG00000003593)	hic1l (ENSSLUG00000003424)
Channel bull blenny	MODERN SPECIES	23	prnprs3 (ENSCGOG00000006791)	prnprs3 (ENSCGOG00000006793)	prnprs3 (ENSCGOG00000006799)	LETM2 (ENSCGOG00000006804)	NSD3 (ENSCGOG00000006841)	plpp5 (ENSCGOG00000007622)	cdc45 (ENSCGOG00000007662)	cldn5a (ENSCGOG00000008066)	zgc:63587 (ENSCGOG00000008119)	septin5a (ENSCGOG00000009647)	gp1bb (ENSCGOG00000011626)	dhx37 (ENSCGOG00000011636)	ufd1l (ENSCGOG00000011932)	si:ch211-51h9.6 (ENSCGOG00000011961)	mrpl40 (ENSCGOG00000011962)	acaa2 (ENSCGOG00000011980) ##22	rpl6 (ENSCGOG00000012569)	ENSCGOG00000012572	dynll1 (ENSCGOG00000012573)	polb (ENSCGOG00000012590)	enkd1 (ENSCGOG00000012937)	vdac3 (ENSCGOG00000013042)	ikbkb (ENSCGOG00000014950)	PLAT (ENSCGOG00000016495)	CLTCL1 (ENSCGOG00000016630)	SLC25A1 (ENSCGOG00000018092)	ENSCGOG00000018264	snap29 (ENSCGOG00000018265)	pi4kab (ENSCGOG00000018273)	serpind1 (ENSCGOG00000018481)	hic1l (ENSCGOG00000018483)
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00940000158546	ENSGT00730000113582	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Stickleback	MODERN SPECIES	12	ppm1f (ENSGACG00000003826)	PIP5KL1 (ENSGACG00000003835)	ABCA2 (ENSGACG00000003853)	isl1a (ENSGACG00000003872)	ENSGACG00000003876	ENSGACG00000003878	golph3a (ENSGACG00000003881)	ENSGACG00000003892	ENSGACG00000003894	npr3 (ENSGACG00000003906)	sub1b (ENSGACG00000003912)	dhx37 (ENSGACG00000003927)	ufd1l (ENSGACG00000003940)	si:ch211-51h9.6 (ENSGACG00000003986)	ENSGACG00000003987	acaa2 (ENSGACG00000003989) ##22	rpl6 (ENSGACG00000004055)	dynll1 (ENSGACG00000004060)	polb (ENSGACG00000004070)	enkd1 (ENSGACG00000004114)	vdac3 (ENSGACG00000004119)	ikbkb (ENSGACG00000004136)	PLAT (ENSGACG00000004146)	ENSGACG00000004156	ENSGACG00000004160	CLTCL1 (ENSGACG00000004169)	SLC25A1 (ENSGACG00000004212)	ENSGACG00000004218	snap29 (ENSGACG00000004226)	pi4kab (ENSGACG00000004240)	serpind1 (ENSGACG00000004263)
Lumpfish	MODERN SPECIES	24	rassf2a (ENSCLMG00005017435)	ENSCLMG00005017434	ENSCLMG00005017432	LETM2 (ENSCLMG00005017430)	NSD3 (ENSCLMG00005016923)	plpp5 (ENSCLMG00005016902)	cdc45 (ENSCLMG00005016855)	cldn5a (ENSCLMG00005016848)	zgc:63587 (ENSCLMG00005016516)	septin5a (ENSCLMG00005016049)	gp1bb (ENSCLMG00005016039)	dhx37 (ENSCLMG00005015998)	ufd1l (ENSCLMG00005015867)	si:ch211-51h9.6 (ENSCLMG00005015854)	mrpl40 (ENSCLMG00005015851)	acaa2 (ENSCLMG00005015620) ##22	rpl6 (ENSCLMG00005015618)	dynll1 (ENSCLMG00005015617)	ENSCLMG00005015615	polb (ENSCLMG00005015613)	ENSCLMG00005015612	vdac3 (ENSCLMG00005015089)	ikbkb (ENSCLMG00005012066)	PLAT (ENSCLMG00005012039)	CLTCL1 (ENSCLMG00005009416)	SLC25A1 (ENSCLMG00005009402)	ENSCLMG00005009401	snap29 (ENSCLMG00005009399)	serpind1 (ENSCLMG00005009398)	pi4kab (ENSCLMG00005008279)	hic1l (ENSCLMG00005008268)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00390000010435.A
Gilthead seabream	MODERN SPECIES	19	prnprs3 (ENSSAUG00010002178)	prnprs3 (ENSSAUG00010002176)	ENSSAUG00010001965	LETM2 (ENSSAUG00010001942)	NSD3 (ENSSAUG00010001218)	plpp5 (ENSSAUG00010001187)	cdc45 (ENSSAUG00010001163)	cldn5a (ENSSAUG00010001151)	zgc:63587 (ENSSAUG00010000828)	septin5a (ENSSAUG00010000718)	gp1bb (ENSSAUG00010000703)	dhx37 (ENSSAUG00010000600)	ufd1l (ENSSAUG00010000565)	si:ch211-51h9.6 (ENSSAUG00010000560)	mrpl40 (ENSSAUG00010000557)	ACAA2 (ENSSAUG00010000353) ##22	rpl6 (ENSSAUG00010025599)	ENSSAUG00010025598	dynll1 (ENSSAUG00010025597)	polb (ENSSAUG00010025593)	enkd1 (ENSSAUG00010025592)	vdac3 (ENSSAUG00010025460)	ikbkb (ENSSAUG00010025211)	PLAT (ENSSAUG00010025194)	ENSSAUG00010025184	CLTCL1 (ENSSAUG00010024475)	SLC25A1 (ENSSAUG00010024444)	ENSSAUG00010024438	snap29 (ENSSAUG00010024437)	serpind1 (ENSSAUG00010024436)	pi4kab (ENSSAUG00010023897)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00940000177458	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00390000010435.A
European seabass	MODERN SPECIES	13	ENSDLAG00005024577	SLC23A2 (ENSDLAG00005024641)	ENSDLAG00005029815	ENSDLAG00005031241	ENSDLAG00005024779	LETM2 (ENSDLAG00005024781)	ENSDLAG00005024791	plpp5 (ENSDLAG00005026492)	CDC45 (ENSDLAG00005024889)	zgc:63587 (ENSDLAG00005004837)	cldn5a (ENSDLAG00005004809)	septin5a (ENSDLAG00005005774)	dhx37 (ENSDLAG00005006009)	ENSDLAG00005006145	mrpl40 (ENSDLAG00005033180)	acaa2 (ENSDLAG00005006405) ##22	rpl6 (ENSDLAG00005006917)	dynll1 (ENSDLAG00005031507)	ENSDLAG00005006941	polb (ENSDLAG00005006964)	enkd1 (ENSDLAG00005007034)	vdac3 (ENSDLAG00005007063)	ikbkb (ENSDLAG00005007449)	ENSDLAG00005009550	ENSDLAG00005027575	ENSDLAG00005009688	ENSDLAG00005011016	ENSDLAG00005011102	snap29 (ENSDLAG00005011114)	pi4kab (ENSDLAG00005011163)	serpind1 (ENSDLAG00005012478)
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005013503	prnprs3 (ENSLCRG00005013504)	prnprs3 (ENSLCRG00005013505)	LETM2 (ENSLCRG00005013508)	NSD3 (ENSLCRG00005013518)	plpp5 (ENSLCRG00005015033)	cdc45 (ENSLCRG00005015044)	cldn5a (ENSLCRG00005015240)	zgc:63587 (ENSLCRG00005015249)	septin5a (ENSLCRG00005015282)	ENSLCRG00005015334	dhx37 (ENSLCRG00005015338)	ufd1l (ENSLCRG00005015551)	si:ch211-51h9.6 (ENSLCRG00005015563)	mrpl40 (ENSLCRG00005000093)	acaa2 (ENSLCRG00005000116) ##22	rpl6 (ENSLCRG00005000140)	ENSLCRG00005000148	dynll1 (ENSLCRG00005000153)	polb (ENSLCRG00005000177)	enkd1 (ENSLCRG00005000199)	vdac3 (ENSLCRG00005000274)	ikbkb (ENSLCRG00005000532)	PLAT (ENSLCRG00005000800)	CLTCL1 (ENSLCRG00005000916)	SLC25A1 (ENSLCRG00005001220)	ENSLCRG00005002170	snap29 (ENSLCRG00005002174)	pi4kab (ENSLCRG00005002223)	serpind1 (ENSLCRG00005003113)	HIC2 (ENSLCRG00005003115)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b
Burton s mouthbrooder	MODERN SPECIES	334	ENSHBUG00000014354	ENSHBUG00000014352	prnprs3 (ENSHBUG00000014342)	LETM2 (ENSHBUG00000014319)	NSD3 (ENSHBUG00000001030)	plpp5 (ENSHBUG00000014112)	cdc45 (ENSHBUG00000014083)	cldn5a (ENSHBUG00000014015)	zgc:63587 (ENSHBUG00000013996)	septin5a (ENSHBUG00000013963)	gp1bb (ENSHBUG00000013929)	dhx37 (ENSHBUG00000013916)	ufd1l (ENSHBUG00000013791)	si:ch211-51h9.6 (ENSHBUG00000013741)	mrpl40 (ENSHBUG00000000404)	acaa2 (ENSHBUG00000013719) ##22	rpl6 (ENSHBUG00000013655)	ENSHBUG00000013629	dynll1 (ENSHBUG00000013614)	polb (ENSHBUG00000013597)	enkd1 (ENSHBUG00000013506)	vdac3 (ENSHBUG00000013494)	ikbkb (ENSHBUG00000013461)	PLAT (ENSHBUG00000013432)	CLTCL1 (ENSHBUG00000013415)	SLC25A1 (ENSHBUG00000013343)	ENSHBUG00000013312	snap29 (ENSHBUG00000013276)	pi4kab (ENSHBUG00000013182)	serpind1 (ENSHBUG00000013043)	hic1l (ENSHBUG00000012959)
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b
P. nyererei	MODERN SPECIES	377	ENSPNYG00000008685	ENSPNYG00000008676	prnprs3 (ENSPNYG00000008655)	LETM2 (ENSPNYG00000008631)	NSD3 (ENSPNYG00000008559)	plpp5 (ENSPNYG00000008519)	cdc45 (ENSPNYG00000008475)	cldn5a (ENSPNYG00000008448)	zgc:63587 (ENSPNYG00000008409)	septin5a (ENSPNYG00000008373)	gp1bb (ENSPNYG00000008346)	dhx37 (ENSPNYG00000008298)	ufd1l (ENSPNYG00000008251)	si:ch211-51h9.6 (ENSPNYG00000008233)	mrpl40 (ENSPNYG00000008216)	acaa2 (ENSPNYG00000008182) ##22	dynll1 (ENSPNYG00000008161)	ENSPNYG00000008148	rpl6 (ENSPNYG00000008108)	polb (ENSPNYG00000008041)	enkd1 (ENSPNYG00000008002)	vdac3 (ENSPNYG00000007979)	ikbkb (ENSPNYG00000007909)	PLAT (ENSPNYG00000007872)	CLTCL1 (ENSPNYG00000007725)	SLC25A1 (ENSPNYG00000007651)	ENSPNYG00000007632	snap29 (ENSPNYG00000007619)	ENSPNYG00000007596	serpind1 (ENSPNYG00000007537)	pi4kab (ENSPNYG00000007420)
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00730000113582	ENSGT00530000064873.b.g.a	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00940000158664	ENSGT00550000074798.a.b
Eastern happy	MODERN SPECIES	3	rassf2a (ENSACLG00000011595)	ENSACLG00000011594	ENSACLG00000011590	ENSACLG00000011586	LETM2 (ENSACLG00000011580)	NSD3 (ENSACLG00000011405)	plpp5 (ENSACLG00000011390)	cdc45 (ENSACLG00000011365)	zgc:63587 (ENSACLG00000011287)	septin5a (ENSACLG00000011272)	gp1bb (ENSACLG00000011269)	dhx37 (ENSACLG00000011192)	ufd1l (ENSACLG00000011132)	si:ch211-51h9.6 (ENSACLG00000011121)	mrpl40 (ENSACLG00000011106)	acaa2 (ENSACLG00000011075) ##22	rpl6 (ENSACLG00000011054)	dynll1 (ENSACLG00000011047)	polb (ENSACLG00000010973)	enkd1 (ENSACLG00000010938)	vdac3 (ENSACLG00000010897)	ikbkb (ENSACLG00000010789)	PLAT (ENSACLG00000010734)	CLTCL1 (ENSACLG00000010321)	SLC25A1 (ENSACLG00000010310)	ENSACLG00000010301	snap29 (ENSACLG00000010296)	ENSACLG00000010289	serpind1 (ENSACLG00000010287)	pi4kab (ENSACLG00000010239)	hic1l (ENSACLG00000010236)
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005009520	ENSMZEG00005009524	ENSMZEG00005009530	LETM2 (ENSMZEG00005009533)	NSD3 (ENSMZEG00005009554)	plpp5 (ENSMZEG00005009601)	cdc45 (ENSMZEG00005009621)	cldn5a (ENSMZEG00005009692)	zgc:63587 (ENSMZEG00005009713)	septin5a (ENSMZEG00005009762)	gp1bb (ENSMZEG00005009787)	dhx37 (ENSMZEG00005009802)	ufd1l (ENSMZEG00005009839)	si:ch211-51h9.6 (ENSMZEG00005009849)	mrpl40 (ENSMZEG00005009853)	acaa2 (ENSMZEG00005009873) ##22	rpl6 (ENSMZEG00005009924)	ENSMZEG00005009980	dynll1 (ENSMZEG00005009988)	polb (ENSMZEG00005010001)	enkd1 (ENSMZEG00005010024)	vdac3 (ENSMZEG00005010040)	ikbkb (ENSMZEG00005010051)	PLAT (ENSMZEG00005010075)	CLTCL1 (ENSMZEG00005010116)	SLC25A1 (ENSMZEG00005010261)	ENSMZEG00005010284	snap29 (ENSMZEG00005010307)	pi4kab (ENSMZEG00005010344)	serpind1 (ENSMZEG00005010423)	hic1l (ENSMZEG00005010459)
Lyretail cichlid	MODERN SPECIES	306	KCNIP3 (ENSNBRG00000018163)	SLC23A2 (ENSNBRG00000018335)	rassf2a (ENSNBRG00000018359)	ENSNBRG00000018376	ENSNBRG00000018388	ENSNBRG00000018398	ENSNBRG00000018413	NSD3 (ENSNBRG00000018432)	plpp5 (ENSNBRG00000018503)	cdc45 (ENSNBRG00000018525)	zgc:63587 (ENSNBRG00000018582)	septin5a (ENSNBRG00000018717)	gp1bb (ENSNBRG00000019122)	dhx37 (ENSNBRG00000019133)	ENSNBRG00000019204	acaa2 (ENSNBRG00000019229) ##22	rpl6 (ENSNBRG00000019281)	dynll1 (ENSNBRG00000019310)	ENSNBRG00000019325	polb (ENSNBRG00000019395)	enkd1 (ENSNBRG00000019766)	vdac3 (ENSNBRG00000019789)	ikbkb (ENSNBRG00000019905)	PLAT (ENSNBRG00000020229)	CLTCL1 (ENSNBRG00000020329)	SLC25A1 (ENSNBRG00000020414)	ENSNBRG00000020444	snap29 (ENSNBRG00000020461)	pi4kab (ENSNBRG00000020474)	serpind1 (ENSNBRG00000020574)	hic1l (ENSNBRG00000020589)
Nile tilapia	MODERN SPECIES	3	rassf2a (ENSONIG00000014424)	ENSONIG00000040558	prnprs3 (ENSONIG00000014423)	LETM2 (ENSONIG00000014421)	NSD3 (ENSONIG00000014418)	plpp5 (ENSONIG00000042110)	cdc45 (ENSONIG00000014412)	cldn5a (ENSONIG00000020432)	zgc:63587 (ENSONIG00000014408)	septin5a (ENSONIG00000040547)	ENSONIG00000029096	dhx37 (ENSONIG00000014404)	ufd1l (ENSONIG00000014395)	si:ch211-51h9.6 (ENSONIG00000040817)	mrpl40 (ENSONIG00000014393)	acaa2 (ENSONIG00000014388) ##22	rpl6 (ENSONIG00000014384)	dynll1 (ENSONIG00000039978)	ENSONIG00000014382	polb (ENSONIG00000014374)	enkd1 (ENSONIG00000014372)	vdac3 (ENSONIG00000014368)	ikbkb (ENSONIG00000014360)	PLAT (ENSONIG00000014359)	ENSONIG00000037980	CLTCL1 (ENSONIG00000014354)	SLC25A1 (ENSONIG00000014353)	ENSONIG00000033773	snap29 (ENSONIG00000028811)	pi4kab (ENSONIG00000014336)	serpind1 (ENSONIG00000014348)
Midas cichlid	DUPLICATION
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	299	ENSACIG00000006249	prnprs3 (ENSACIG00000006252)	prnprs3 (ENSACIG00000006264)	LETM2 (ENSACIG00000006311)	NSD3 (ENSACIG00000006333)	plpp5 (ENSACIG00000006411)	cdc45 (ENSACIG00000006474)	zgc:63587 (ENSACIG00000006540)	septin5a (ENSACIG00000006554)	ENSACIG00000006581	dhx37 (ENSACIG00000006590)	ufd1l (ENSACIG00000006650)	mrpl40 (ENSACIG00000006672)	ACAA2 (ENSACIG00000006695) ##22	mrpl40 (ENSACIG00000006717)	ENSACIG00000006753 ##22
Midas cichlid	MODERN SPECIES	299	SLC23A2 (ENSACIG00000006192)	rassf2a (ENSACIG00000006222)	ENSACIG00000006249	prnprs3 (ENSACIG00000006252)	prnprs3 (ENSACIG00000006264)	LETM2 (ENSACIG00000006311)	NSD3 (ENSACIG00000006333)	plpp5 (ENSACIG00000006411)	cdc45 (ENSACIG00000006474)	zgc:63587 (ENSACIG00000006540)	septin5a (ENSACIG00000006554)	ENSACIG00000006581	dhx37 (ENSACIG00000006590)	ufd1l (ENSACIG00000006650)	mrpl40 (ENSACIG00000006672)	ACAA2 (ENSACIG00000006695) ##22	mrpl40 (ENSACIG00000006717)	ENSACIG00000006753 ##22
Midas cichlid	MODERN SPECIES	532																ENSACIG00000018182 ##22	rpl6 (ENSACIG00000018214)	dynll1 (ENSACIG00000018385)	ENSACIG00000018391	polb (ENSACIG00000018401)	enkd1 (ENSACIG00000018422)	vdac3 (ENSACIG00000018446)	ikbkb (ENSACIG00000018468)	PLAT (ENSACIG00000018518)	CLTCL1 (ENSACIG00000018605)	SLC25A1 (ENSACIG00000018660)	ENSACIG00000018700	snap29 (ENSACIG00000018710)	pi4kab (ENSACIG00000018730)	serpind1 (ENSACIG00000018802)	hic1l (ENSACIG00000018835)
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000158782.d.a	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00940000158782.d.a	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837
Amphiprion	ANCESTRAL SPECIES	20	ENSGT00940000158782.d.a	ENSGT00950000182953.C.c	ENSGT00940000158546	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00940000177458	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978	ENSGT00390000009837
Orange clownfish	MODERN SPECIES	19	prnprs3 (ENSAPEG00000017876)	prnprs3 (ENSAPEG00000017866)	rassf2a (ENSAPEG00000017854)	LETM2 (ENSAPEG00000017832)	NSD3 (ENSAPEG00000017752)	plpp5 (ENSAPEG00000017740)	cdc45 (ENSAPEG00000017699)	cldn5a (ENSAPEG00000017660)	zgc:63587 (ENSAPEG00000017625)	septin5a (ENSAPEG00000017611)	ENSAPEG00000017598	dhx37 (ENSAPEG00000017509)	ufd1l (ENSAPEG00000017418)	si:ch211-51h9.6 (ENSAPEG00000017393)	mrpl40 (ENSAPEG00000017401)	acaa2 (ENSAPEG00000017346) ##22	rpl6 (ENSAPEG00000017318)	dynll1 (ENSAPEG00000017303)	polb (ENSAPEG00000017246)	enkd1 (ENSAPEG00000017204)	vdac3 (ENSAPEG00000017163)	ikbkb (ENSAPEG00000017117)	PLAT (ENSAPEG00000017076)	ENSAPEG00000017061	CLTCL1 (ENSAPEG00000016960)	SLC25A1 (ENSAPEG00000016890)	ENSAPEG00000016859	snap29 (ENSAPEG00000016832)	ENSAPEG00000016807	serpind1 (ENSAPEG00000016774)	pi4kab (ENSAPEG00000016643)
Clown anemonefish	MODERN SPECIES	1633	AP4E1 (ENSAOCG00000003379)	gnb5a (ENSAOCG00000003371)	MYO5C (ENSAOCG00000003351)	ENSAOCG00000003335	ENSAOCG00000003321	ARPP19 (ENSAOCG00000003315)	rsl24d1 (ENSAOCG00000003309)	ENSAOCG00000000083	RFX7 (ENSAOCG00000003279)	ENSAOCG00000003271	ENSAOCG00000003265	ENSAOCG00000003258	ufd1l (ENSAOCG00000003231)	si:ch211-51h9.6 (ENSAOCG00000003219)	mrpl40 (ENSAOCG00000003216)	acaa2 (ENSAOCG00000003214) ##22	rpl6 (ENSAOCG00000003204)	dynll1 (ENSAOCG00000003208)	polb (ENSAOCG00000003197)	enkd1 (ENSAOCG00000003184)	vdac3 (ENSAOCG00000003177)	ikbkb (ENSAOCG00000003169)	PLAT (ENSAOCG00000003161)	CLTCL1 (ENSAOCG00000003149)	SLC25A1 (ENSAOCG00000003112)	ENSAOCG00000003099	snap29 (ENSAOCG00000000074)	pi4kab (ENSAOCG00000003085)	serpind1 (ENSAOCG00000000072)
Spiny chromis	MODERN SPECIES	244	ENSAPOG00000022089	prnprs3 (ENSAPOG00000022079)	prnprs3 (ENSAPOG00000022069)	LETM2 (ENSAPOG00000021984)	NSD3 (ENSAPOG00000000624)	plpp5 (ENSAPOG00000021769)	cdc45 (ENSAPOG00000021709)	cldn5a (ENSAPOG00000021628)	zgc:63587 (ENSAPOG00000021616)	septin5a (ENSAPOG00000021568)	gp1bb (ENSAPOG00000021513)	dhx37 (ENSAPOG00000021493)	ufd1l (ENSAPOG00000021356)	si:ch211-51h9.6 (ENSAPOG00000021303)	mrpl40 (ENSAPOG00000021291)	acaa2 (ENSAPOG00000021269) ##22
Bicolor damselfish	MODERN SPECIES	2211								cldn5a (ENSSPAG00000015701)	zgc:63587 (ENSSPAG00000015654)	septin5a (ENSSPAG00000015627)	ENSSPAG00000015619	dhx37 (ENSSPAG00000015538)	ufd1l (ENSSPAG00000015511)	si:ch211-51h9.6 (ENSSPAG00000015497)	mrpl40 (ENSSPAG00000015481)	acaa2 (ENSSPAG00000015458) ##22	rpl6 (ENSSPAG00000015445)
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.a.a.b.f	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664
Oryzias	ANCESTRAL SPECIES	7	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a.g	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a.g	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.a.a.b.f	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Indian medaka	MODERN SPECIES	11	SLC23A2 (ENSOMEG00000018332)	rassf2a (ENSOMEG00000018260)	ENSOMEG00000018179	ENSOMEG00000018169	LETM2 (ENSOMEG00000018137)	NSD3 (ENSOMEG00000018046)	plpp5 (ENSOMEG00000018008)	cdc45 (ENSOMEG00000017970)	zgc:63587 (ENSOMEG00000017925)	septin5a (ENSOMEG00000017874)	gp1bb (ENSOMEG00000017791)	dhx37 (ENSOMEG00000000674)	ufd1l (ENSOMEG00000017707)	si:ch211-51h9.6 (ENSOMEG00000017654)	mrpl40 (ENSOMEG00000017632)	acaa2 (ENSOMEG00000017608) ##22	rpl6 (ENSOMEG00000017595)	polb (ENSOMEG00000017566)	dynll1 (ENSOMEG00000017515)	enkd1 (ENSOMEG00000000438)	vdac3 (ENSOMEG00000017489)	ikbkb (ENSOMEG00000017438)	PLAT (ENSOMEG00000017298)	ENSOMEG00000000698	CLTCL1 (ENSOMEG00000017096)	SLC25A1 (ENSOMEG00000016887)	ENSOMEG00000016836	snap29 (ENSOMEG00000016798)	ENSOMEG00000000422	serpind1 (ENSOMEG00000016719)	ENSOMEG00000016702
Javanese ricefish	MODERN SPECIES	23	gldc (ENSOJAG00000013893)	COQ2 (ENSOJAG00000014502)	ENSOJAG00000014516	mfsd10 (ENSOJAG00000014570)	cenatac (ENSOJAG00000014678)	ENSOJAG00000014697	ENSOJAG00000014720	gas1a (ENSOJAG00000014742)	tars1 (ENSOJAG00000014924)	TMEM8B (ENSOJAG00000017142)	mccc2 (ENSOJAG00000000183)	ENSOJAG00000000539	ufd1l (ENSOJAG00000001117)	si:ch211-51h9.6 (ENSOJAG00000001128)	mrpl40 (ENSOJAG00000001133)	acaa2 (ENSOJAG00000001160) ##22	rpl6 (ENSOJAG00000001198)	dynll1 (ENSOJAG00000001211)	ENSOJAG00000001214	enkd1 (ENSOJAG00000001218)	polb (ENSOJAG00000001229)	vdac3 (ENSOJAG00000001251)	ikbkb (ENSOJAG00000001342)	PLAT (ENSOJAG00000001594)	ENSOJAG00000001714	SLC25A1 (ENSOJAG00000001786)	ENSOJAG00000001829	snap29 (ENSOJAG00000001837)	serpind1 (ENSOJAG00000002015)	hic1l (ENSOJAG00000002257)	ENSOJAG00000002266
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a.g	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00940000177458	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000001618	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00940000159978
Chinese medaka	MODERN SPECIES	37	rassf2a (ENSOSIG00000013012)	ENSOSIG00000013014	ENSOSIG00000013016	ENSOSIG00000013017	LETM2 (ENSOSIG00000013019)	NSD3 (ENSOSIG00000013030)	plpp5 (ENSOSIG00000013444)	cdc45 (ENSOSIG00000013447)	zgc:63587 (ENSOSIG00000013469)	septin5a (ENSOSIG00000015366)	ENSOSIG00000015373	dhx37 (ENSOSIG00000015376)	ufd1l (ENSOSIG00000015621)	si:ch211-51h9.6 (ENSOSIG00000015624)	mrpl40 (ENSOSIG00000015626)	acaa2 (ENSOSIG00000015627) ##22	rpl6 (ENSOSIG00000015628)	ENSOSIG00000015629	dynll1 (ENSOSIG00000015630)	polb (ENSOSIG00000015635)	enkd1 (ENSOSIG00000015633)	vdac3 (ENSOSIG00000015638)	ikbkb (ENSOSIG00000015909)	PLAT (ENSOSIG00000016693)	ENSOSIG00000016705	CLTCL1 (ENSOSIG00000016756)	SLC25A1 (ENSOSIG00000017188)	ENSOSIG00000017916	snap29 (ENSOSIG00000017919)	pi4kab (ENSOSIG00000018406)	serpind1 (ENSOSIG00000022942)
Japanese Medaka HdrR	MODERN SPECIES	23	ENSORLG00000024213	LETM2 (ENSORLG00000002813)	NSD3 (ENSORLG00000002807)	plpp5 (ENSORLG00000002747)	cdc45 (ENSORLG00000002724)	cldn5a (ENSORLG00000027288)	zgc:63587 (ENSORLG00000002669)	septin5a (ENSORLG00000024104)	gp1bb (ENSORLG00000024381)	ENSORLG00000023529	ENSORLG00000028422	dhx37 (ENSORLG00000002635)	ufd1l (ENSORLG00000002611)	si:ch211-51h9.6 (ENSORLG00000002580)	mrpl40 (ENSORLG00000002574)	acaa2 (ENSORLG00000002564) ##22	rpl6 (ENSORLG00000002519)	dynll1 (ENSORLG00000002511)	ENSORLG00000022487	polb (ENSORLG00000002509)	enkd1 (ENSORLG00000002502)	vdac3 (ENSORLG00000002493)	ikbkb (ENSORLG00000002465)	plat (ENSORLG00000002355)	ENSORLG00000024247	CLTCL1 (ENSORLG00000002325)	ENSORLG00000002292	ENSORLG00000002270	snap29 (ENSORLG00000002265)	serpind1 (ENSORLG00000002247)	ENSORLG00000002217
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069
Aplocheiloidei	ANCESTRAL SPECIES	21	ENSGT00940000158546	ENSGT00730000113582	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT01100000263793	ENSGT00390000000378.d.b	ENSGT00390000001618	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664
Mangrove rivulus	MODERN SPECIES	21	rassf2a (ENSKMAG00000003060)	prnprs3 (ENSKMAG00000003070)	ENSKMAG00000003073	LETM2 (ENSKMAG00000003081)	NSD3 (ENSKMAG00000003104)	plpp5 (ENSKMAG00000003214)	cdc45 (ENSKMAG00000003240)	cldn5a (ENSKMAG00000003322)	zgc:63587 (ENSKMAG00000003351)	septin5a (ENSKMAG00000003408)	gp1bb (ENSKMAG00000003485)	dhx37 (ENSKMAG00000003517)	ufd1l (ENSKMAG00000003658)	mrpl40 (ENSKMAG00000003717)	si:ch211-51h9.6 (ENSKMAG00000003713)	acaa2 (ENSKMAG00000003733) ##22	rpl6 (ENSKMAG00000003779)	ENSKMAG00000003790	dynll1 (ENSKMAG00000003804)	polb (ENSKMAG00000003834)	enkd1 (ENSKMAG00000003893)	vdac3 (ENSKMAG00000003937)	ikbkb (ENSKMAG00000003977)	PLAT (ENSKMAG00000004012)	CLTCL1 (ENSKMAG00000004093)	SLC25A1 (ENSKMAG00000004257)	ENSKMAG00000004312	snap29 (ENSKMAG00000004340)	pi4kab (ENSKMAG00000004404)	serpind1 (ENSKMAG00000004579)	hic1l (ENSKMAG00000004641)
Turquoise killifish	MODERN SPECIES	1627	ENSNFUG00015015066	rassf2a (ENSNFUG00015015079)	ENSNFUG00015015157	prnprs3 (ENSNFUG00015015166)	LETM2 (ENSNFUG00015015175)	WHSC1L1 (ENSNFUG00015015319)	PPAPDC1B (ENSNFUG00015016741)	CDC45 (ENSNFUG00015016758)	cldn5a (ENSNFUG00015016893)	zgc:63587 (ENSNFUG00015014125)	SEPT5A (ENSNFUG00015014443)	ENSNFUG00015014995	UFD1L (ENSNFUG00015015193)	si:ch211-51h9.6 (ENSNFUG00015015257)	MRPL40 (ENSNFUG00015015276)	ACAA2 (ENSNFUG00015015302) ##22	RPL6 (ENSNFUG00015015428)	DYNLL1 (ENSNFUG00015015440)	ENSNFUG00015015455	POLB (ENSNFUG00015015473)	ENSNFUG00015015559	VDAC3 (ENSNFUG00015015582)	ikbkb (ENSNFUG00015015755)	PLAT (ENSNFUG00015016559)	ENSNFUG00015016594	SLC25A1 (ENSNFUG00015016764)	ENSNFUG00015016808	snap29 (ENSNFUG00015016817)	pi4kab (ENSNFUG00015016838)	serpind1 (ENSNFUG00015016997)	ENSNFUG00015017007
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00940000155571.A	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00940000158546	ENSGT00730000113582	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000156835.l.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00940000158664	ENSGT00550000074798.a.b
Poecilia	ANCESTRAL SPECIES	3	ENSGT00940000158546	ENSGT00730000113582	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00940000159978
NAME_6	ANCESTRAL SPECIES	27	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000155715	ENSGT00940000160595.a.a	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT00550000074798.a.b	ENSGT00940000158664
Amazon molly	MODERN SPECIES	398	KCNIP3 (ENSPFOG00000010871)	SLC23A2 (ENSPFOG00000010953)	rassf2a (ENSPFOG00000022252)	prnprs3 (ENSPFOG00000011164)	LETM2 (ENSPFOG00000011174)	ENSPFOG00000011218	plpp5 (ENSPFOG00000011539)	cdc45 (ENSPFOG00000011591)	cldn5a (ENSPFOG00000020463)	zgc:63587 (ENSPFOG00000011730)	septin5a (ENSPFOG00000011811)	gp1bb (ENSPFOG00000020464)	dhx37 (ENSPFOG00000012138)	ufd1l (ENSPFOG00000012499)	mrpl40 (ENSPFOG00000012506)	acaa2 (ENSPFOG00000012540) ##22	rpl6 (ENSPFOG00000012600)	dynll1 (ENSPFOG00000012673)	polb (ENSPFOG00000012676)	enkd1 (ENSPFOG00000012747)	vdac3 (ENSPFOG00000012773)	ikbkb (ENSPFOG00000012837)	PLAT (ENSPFOG00000013063)	ENSPFOG00000013145	ENSPFOG00000013448	ENSPFOG00000022633	SLC25A1 (ENSPFOG00000013766)	ENSPFOG00000013826	snap29 (ENSPFOG00000013846)	pi4kab (ENSPFOG00000013937)	serpind1 (ENSPFOG00000014362)
Sailfin molly	MODERN SPECIES	837					NSD3 (ENSPLAG00000018796)	plpp5 (ENSPLAG00000018742)	cdc45 (ENSPLAG00000018713)	cldn5a (ENSPLAG00000018631)	zgc:63587 (ENSPLAG00000018604)	septin5a (ENSPLAG00000018547)	ENSPLAG00000017511	dhx37 (ENSPLAG00000017487)	ufd1l (ENSPLAG00000017380)	si:ch211-51h9.6 (ENSPLAG00000017340)	mrpl40 (ENSPLAG00000017335)	acaa2 (ENSPLAG00000000396) ##22	rpl6 (ENSPLAG00000017306)	dynll1 (ENSPLAG00000017271)	polb (ENSPLAG00000017258)	enkd1 (ENSPLAG00000017224)	vdac3 (ENSPLAG00000017207)	ikbkb (ENSPLAG00000016843)
Guppy	MODERN SPECIES	461	ENSPREG00000012023	prnprs3 (ENSPREG00000011967)	LETM2 (ENSPREG00000011951)	ENSPREG00000011933	NSD3 (ENSPREG00000011814)	plpp5 (ENSPREG00000011750)	cdc45 (ENSPREG00000011687)	cldn5a (ENSPREG00000011649)	zgc:63587 (ENSPREG00000011612)	septin5a (ENSPREG00000011585)	gp1bb (ENSPREG00000011573)	dhx37 (ENSPREG00000011504)	ufd1l (ENSPREG00000011473)	si:ch211-51h9.6 (ENSPREG00000011460)	mrpl40 (ENSPREG00000011448)	acaa2 (ENSPREG00000011420) ##22	ENSPREG00000011410	rpl6 (ENSPREG00000011393)	dynll1 (ENSPREG00000011383)	ENSPREG00000011377	polb (ENSPREG00000011349)	enkd1 (ENSPREG00000011330)	vdac3 (ENSPREG00000011245)	ikbkb (ENSPREG00000011213)	PLAT (ENSPREG00000011099)	CLTCL1 (ENSPREG00000010914)	SLC25A1 (ENSPREG00000010834)	ENSPREG00000010799	snap29 (ENSPREG00000010781)	serpind1 (ENSPREG00000010743)	pi4kab (ENSPREG00000010519)
Platyfish	MODERN SPECIES	3	rassf2a (ENSXMAG00000014844)	ENSXMAG00000020314	prnprs3 (ENSXMAG00000025665)	LETM2 (ENSXMAG00000023674)	NSD3 (ENSXMAG00000028356)	plpp5 (ENSXMAG00000014791)	cdc45 (ENSXMAG00000014750)	cldn5a (ENSXMAG00000023193)	zgc:63587 (ENSXMAG00000014718)	septin5a (ENSXMAG00000014644)	gp1bb (ENSXMAG00000020312)	dhx37 (ENSXMAG00000014623)	ufd1l (ENSXMAG00000014601)	si:ch211-51h9.6 (ENSXMAG00000014600)	mrpl40 (ENSXMAG00000014595)	acaa2 (ENSXMAG00000014579) ##22	dynll1 (ENSXMAG00000024358)	rpl6 (ENSXMAG00000026838)	ENSXMAG00000024420	polb (ENSXMAG00000014540)	enkd1 (ENSXMAG00000014531)	vdac3 (ENSXMAG00000029526)	ikbkb (ENSXMAG00000014460)	PLAT (ENSXMAG00000014441)	ENSXMAG00000024435	ENSXMAG00000014407	SLC25A1 (ENSXMAG00000023920)	ENSXMAG00000026447	snap29 (ENSXMAG00000014386)	serpind1 (ENSXMAG00000014376)	pi4kab (ENSXMAG00000014261)
NAME_4	ANCESTRAL SPECIES	24	ENSGT00730000113582	ENSGT00530000064873.b.h	ENSGT00530000064873.b.g.b	ENSGT00950000183167.a.b.b.a	ENSGT00940000155355	ENSGT00940000159772	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000002408	ENSGT00390000002511	ENSGT00390000010239	ENSGT01030000234626.D ##22	ENSGT00390000003682	ENSGT00390000000378.d.b	ENSGT01100000263793	ENSGT00940000156918	ENSGT00940000153866.B	ENSGT00950000182869.e.b.g.a.h	ENSGT00950000182937.A.b	ENSGT00940000158930	ENSGT00940000155715	ENSGT00950000183166.a.b	ENSGT00550000074856.c.b	ENSGT00390000008325.a	ENSGT00950000182843.a.b	ENSGT01030000235069	ENSGT00550000074798.a.b
Sheepshead minnow	MODERN SPECIES	372	rassf2a (ENSCVAG00000017597)	ENSCVAG00000017602	prnprs3 (ENSCVAG00000017612)	LETM2 (ENSCVAG00000017620)	NSD3 (ENSCVAG00000017829)	plpp5 (ENSCVAG00000017843)	cdc45 (ENSCVAG00000017889)	cldn5a (ENSCVAG00000017918)	zgc:63587 (ENSCVAG00000017959)	septin5a (ENSCVAG00000017986)	gp1bb (ENSCVAG00000018001)	dhx37 (ENSCVAG00000018153)	ufd1l (ENSCVAG00000018212)	si:ch211-51h9.6 (ENSCVAG00000018222)	mrpl40 (ENSCVAG00000018229)	acaa2 (ENSCVAG00000018266) ##22	rpl6 (ENSCVAG00000018272)	dynll1 (ENSCVAG00000018284)	polb (ENSCVAG00000018361)	enkd1 (ENSCVAG00000018372)	vdac3 (ENSCVAG00000018428)	ikbkb (ENSCVAG00000018660)	PLAT (ENSCVAG00000018691)	CLTCL1 (ENSCVAG00000018908)	SLC25A1 (ENSCVAG00000018934)	ENSCVAG00000018960	snap29 (ENSCVAG00000018974)	ENSCVAG00000000498	serpind1 (ENSCVAG00000019071)	pi4kab (ENSCVAG00000019178)	hic1l (ENSCVAG00000019191)
Mummichog	MODERN SPECIES	1328																acaa2 (ENSFHEG00000009035) ##22	rpl6 (ENSFHEG00000008998)	dynll1 (ENSFHEG00000008975)	ENSFHEG00000008955	polb (ENSFHEG00000008945)	enkd1 (ENSFHEG00000008895)
Spotted gar	MODERN SPECIES	658	mrps27 (ENSLOCG00000011134)	MAP1B (ENSLOCG00000011141)	PSTPIP2 (ENSLOCG00000011149)	atp5fa1 (ENSLOCG00000011157)	haus1 (ENSLOCG00000011169)	zgc:77838 (ENSLOCG00000011177)	RNF165 (ENSLOCG00000011182)	LOXHD1 (ENSLOCG00000011190)	st8sia5 (ENSLOCG00000011209)	rpl37 (ENSLOCG00000011220)	prkaa1 (ENSLOCG00000011222)	ptger4a (ENSLOCG00000011237)	ak3 (ENSLOCG00000011239)	cdc37l1 (ENSLOCG00000011249)	GAK (ENSLOCG00000011267)	acaa2 (ENSLOCG00000011285) ##22	lipg (ENSLOCG00000011301)	kcmf1 (ENSLOCG00000011313)	slc20a2 (ENSLOCG00000011322)	ENSLOCG00000011330	smn1 (ENSLOCG00000011339)	hspb11 (ENSLOCG00000011348)	mccc2 (ENSLOCG00000011352)	ENSLOCG00000011364	dab2 (ENSLOCG00000011371)	c9 (ENSLOCG00000011377)	TMEM8B (ENSLOCG00000011389)	ENSLOCG00000011395	tars1 (ENSLOCG00000011402)	gas1a (ENSLOCG00000017545)	dapk1 (ENSLOCG00000011423)
Reedfish	MODERN SPECIES	394															ENSECRG00000019010	acaa2 (ENSECRG00000019052) ##22
Sarcopterygii	ANCESTRAL SPECIES	68	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00940000170114	ENSGT00950000183010.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234535.C	ENSGT00390000018830
Amniota	ANCESTRAL SPECIES	4	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Sauria	ANCESTRAL SPECIES	5	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000178986	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT00940000154779.a.a	ENSGT00940000161753
Toxicofera	ANCESTRAL SPECIES	18	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT00940000154779.a.a	ENSGT00940000161753
Elapidae	ANCESTRAL SPECIES	19	ENSGT00940000157449	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT00940000154779.a.a	ENSGT00940000161753
Elapidae_a	ANCESTRAL SPECIES	24	ENSGT00940000157449	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b
Acanthophiinae	ANCESTRAL SPECIES	24	ENSGT00940000157449	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850.i	ENSGT01030000234969	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b
Mainland tiger snake	MODERN SPECIES	15	STARD6 (ENSNSUG00000013114)	POLI (ENSNSUG00000013113)	MBD2 (ENSNSUG00000013112)	ENSNSUG00000013111	DCC (ENSNSUG00000013107)	MEX3C (ENSNSUG00000013103)	SMAD4 (ENSNSUG00000013101)	ELAC1 (ENSNSUG00000013099)	ME2 (ENSNSUG00000013096)	MAPK4 (ENSNSUG00000013095)	ENSNSUG00000013094	ENSNSUG00000013093	ENSNSUG00000013092	ENSNSUG00000013091	ENSNSUG00000013090	ACAA2 (ENSNSUG00000013087) ##22	LIPG (ENSNSUG00000012949)	ENSNSUG00000012945	C18orf32 (ENSNSUG00000012944)	DYM (ENSNSUG00000012943)	SMAD7 (ENSNSUG00000012942)	CTIF (ENSNSUG00000012893)	ENSNSUG00000012891
Eastern brown snake	MODERN SPECIES	2	RAB27B (ENSPTXG00000017831)	C18orf54 (ENSPTXG00000017830)	ENSPTXG00000017829	POLI (ENSPTXG00000017828)	MBD2 (ENSPTXG00000017827)	DCC (ENSPTXG00000017825)	MEX3C (ENSPTXG00000017824)	SMAD4 (ENSPTXG00000017823)	ELAC1 (ENSPTXG00000017822)	ME2 (ENSPTXG00000017821)	MAPK4 (ENSPTXG00000017820)	ENSPTXG00000017819	ENSPTXG00000017818	ENSPTXG00000017817	MYO5B (ENSPTXG00000006873)	ACAA2 (ENSPTXG00000006871) ##22	LIPG (ENSPTXG00000006699)	ENSPTXG00000006694	C18orf32 (ENSPTXG00000006692)	DYM (ENSPTXG00000006583)	SMAD7 (ENSPTXG00000006582)	CTIF (ENSPTXG00000006581)	ZBTB7C (ENSPTXG00000006580)	SMAD2 (ENSPTXG00000006579)	SKOR2 (ENSPTXG00000006578)	IER3IP1 (ENSPTXG00000006577)	HDHD2 (ENSPTXG00000006576)	KATNAL2 (ENSPTXG00000006575)	PIAS2 (ENSPTXG00000006574)	ENSPTXG00000006543
Blue-lipped sea krait	MODERN SPECIES	10377																ACAA2 (ENSLLTG00000013878) ##22
Indian cobra	MODERN SPECIES	1	C18orf54 (ENSNNAG00000012379)	STARD6 (ENSNNAG00000012457)	POLI (ENSNNAG00000012495)	MBD2 (ENSNNAG00000012567)	DCC (ENSNNAG00000012608)	ENSNNAG00000013210	MEX3C (ENSNNAG00000013225)	SMAD4 (ENSNNAG00000013239)	ELAC1 (ENSNNAG00000013355)	ME2 (ENSNNAG00000013386)	MAPK4 (ENSNNAG00000013604)	ENSNNAG00000013618	ENSNNAG00000013628	ENSNNAG00000013638	MYO5B (ENSNNAG00000013682)	ACAA2 (ENSNNAG00000013909) ##22	LIPG (ENSNNAG00000013974)	ENSNNAG00000014239	C18orf32 (ENSNNAG00000014266)	DYM (ENSNNAG00000014278)	SMAD7 (ENSNNAG00000014299)	CTIF (ENSNNAG00000014324)	ZBTB7C (ENSNNAG00000014457)	SMAD2 (ENSNNAG00000014472)	ENSNNAG00000014533	IER3IP1 (ENSNNAG00000014563)	ENSNNAG00000014575	KATNAL2 (ENSNNAG00000014598)	PIAS2 (ENSNNAG00000014631)	ENSNNAG00000014747	ST8SIA5 (ENSNNAG00000014880)
Lizard	MODERN SPECIES	1																ACAA2 (ENSACAG00000017990) ##22	LIPG (ENSACAG00000017995)	ENSACAG00000017998	C18orf32 (ENSACAG00000028947)	DYM (ENSACAG00000018002)	ENSACAG00000045249	SMAD7 (ENSACAG00000040103)	CTIF (ENSACAG00000018006)	ZBTB7C (ENSACAG00000018007)	SMAD2 (ENSACAG00000018008)	GPBP1 (ENSACAG00000014605)	MIER3 (ENSACAG00000028478)	SETD9 (ENSACAG00000014688)	MAP3K1 (ENSACAG00000014703)	ANKRD55 (ENSACAG00000014766)	IL6ST (ENSACAG00000014810)
Laterata	ANCESTRAL SPECIES	8	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973.h	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Argentine black and white tegu	MODERN SPECIES	34	STARD6 (ENSSMRG00000016506)	ENSSMRG00000016508	POLI (ENSSMRG00000016509)	MBD2 (ENSSMRG00000016511)	DCC (ENSSMRG00000016526)	ENSSMRG00000016529	MEX3C (ENSSMRG00000016531)	SMAD4 (ENSSMRG00000016533)	ELAC1 (ENSSMRG00000016541)	ME2 (ENSSMRG00000016542)	MAPK4 (ENSSMRG00000016550)	ENSSMRG00000016552	ENSSMRG00000016555	ENSSMRG00000016557	MYO5B (ENSSMRG00000016569)	ACAA2 (ENSSMRG00000016578) ##22	LIPG (ENSSMRG00000016580)	RPL17 (ENSSMRG00000016581)	C18orf32 (ENSSMRG00000016584)	DYM (ENSSMRG00000016587)	SMAD7 (ENSSMRG00000016590)	CTIF (ENSSMRG00000016591)	ENSSMRG00000016592	ZBTB7C (ENSSMRG00000016594)	SMAD2 (ENSSMRG00000016595)	SKOR2 (ENSSMRG00000000124)	IER3IP1 (ENSSMRG00000000137)	HDHD2 (ENSSMRG00000000191)	KATNAL2 (ENSSMRG00000000219)	PIAS2 (ENSSMRG00000000256)	ENSSMRG00000000298
Common wall lizard	MODERN SPECIES	2	STARD6 (ENSPMRG00000010581)	POLI (ENSPMRG00000010577)	MBD2 (ENSPMRG00000010558)	ENSPMRG00000010553	DCC (ENSPMRG00000010220)	MEX3C (ENSPMRG00000010170)	SMAD4 (ENSPMRG00000010161)	ELAC1 (ENSPMRG00000010152)	ME2 (ENSPMRG00000010147)	MAPK4 (ENSPMRG00000010141)	ENSPMRG00000010136	ENSPMRG00000010134	ENSPMRG00000010128	ENSPMRG00000010121	MYO5B (ENSPMRG00000009756)	ACAA2 (ENSPMRG00000009605) ##22	LIPG (ENSPMRG00000009592)	ENSPMRG00000009575	C18orf32 (ENSPMRG00000009571)	DYM (ENSPMRG00000009531)	SMAD7 (ENSPMRG00000009512)	CTIF (ENSPMRG00000009496)	ZBTB7C (ENSPMRG00000009478)	ENSPMRG00000009469	SMAD2 (ENSPMRG00000009455)	SKOR2 (ENSPMRG00000009448)	HDHD2 (ENSPMRG00000009442)	KATNAL2 (ENSPMRG00000015210)	PIAS2 (ENSPMRG00000015190)	ENSPMRG00000015174	ST8SIA5 (ENSPMRG00000015167)
tuatara	MODERN SPECIES	1805	ENSSPUG00000017944	C18orf54 (ENSSPUG00000017917)	POLI (ENSSPUG00000017687)	ENSSPUG00000017567	DCC (ENSSPUG00000017554)	IER3IP1 (ENSSPUG00000017534)	MEX3C (ENSSPUG00000017527)	SMAD4 (ENSSPUG00000017513)	ELAC1 (ENSSPUG00000017500)	ME2 (ENSSPUG00000017432)	MAPK4 (ENSSPUG00000017389)	ENSSPUG00000017384	ENSSPUG00000017375	ENSSPUG00000017366	MYO5B (ENSSPUG00000017329)	ACAA2 (ENSSPUG00000017306) ##22	LIPG (ENSSPUG00000017288)	RPL17 (ENSSPUG00000017264)	C18orf32 (ENSSPUG00000017262)	DYM (ENSSPUG00000017251)
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Aves	ANCESTRAL SPECIES	4	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Neognathae	ANCESTRAL SPECIES	12	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Phasianidae	ANCESTRAL SPECIES	5	ENSGT01030000234618.E	ENSGT00390000016258	ENSGT00950000183103.d.a.b	ENSGT01030000234535.E.a	ENSGT00940000155301	ENSGT00940000156170.b	ENSGT00940000156873.f	ENSGT00940000160524	ENSGT00390000018044.b.a	ENSGT00940000154437.ad.b	ENSGT00390000015600.c.b	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT01030000234618.E	ENSGT00390000016258	ENSGT00950000183103.d.a.b	ENSGT01030000234535.E.a	ENSGT00940000155301	ENSGT00940000156170.b	ENSGT00940000156873.f	ENSGT00940000160524	ENSGT00390000018044.b.a	ENSGT00940000154437.ad.b	ENSGT00390000015600.c.b	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.k	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d.a.b	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Chicken	MODERN SPECIES	131	NARS (ENSGALG00010010986)	FECH (ENSGALG00010011003)	ONECUT2 (ENSGALG00010011008)	ST8SIA3 (ENSGALG00010010548)	WDR7 (ENSGALG00010010252)	TXNL1 (ENSGALG00010010288)	NEDD4L (ENSGALG00010010322)	ALPK2 (ENSGALG00010010330)	PCASP1 (ENSGALG00010010352)	ENSGALG00010010368	SEC11C (ENSGALG00010010382)	GRP (ENSGALG00010010395)	RAX (ENSGALG00010010409)	CPLX4 (ENSGALG00010010415)	LMAN1L (ENSGALG00010010445)	ACAA2 (ENSGALG00010010463) ##22	LIPG (ENSGALG00010009013)	RPL17 (ENSGALG00010011192)	ENSGALG00010011203	DYM (ENSGALG00010010922)	SMAD7 (ENSGALG00010009910)	CTIF (ENSGALG00010010007)	ZBTB7C (ENSGALG00010010049)	SMAD2 (ENSGALG00010010623)	SKOR2 (ENSGALG00010011268)	IER3IP1 (ENSGALG00010011367)	HDHD2 (ENSGALG00010012845)	KATNAL2 (ENSGALG00010011422)	PIAS2 (ENSGALG00010009774)	ST8SIA5 (ENSGALG00010009858)	LOXHD1 (ENSGALG00010012046)
Turkey	MODERN SPECIES	2	SEC62 (ENSMGAG00000010248)	GPR160 (ENSMGAG00000016053)	ENSMGAG00000010235	PRKCI (ENSMGAG00000010216)	SKIL (ENSMGAG00000010204)	CLDN11 (ENSMGAG00000010202)	SLC7A14 (ENSMGAG00000010187)	RPL22L1 (ENSMGAG00000010186)	EIF5A2 (ENSMGAG00000020202)	SLC2A2 (ENSMGAG00000010184)	TNIK (ENSMGAG00000010136)	PLD1 (ENSMGAG00000010081)	FNDC3B (ENSMGAG00000010040)	ENSMGAG00000019728	ENSMGAG00000001176	ACAA2 (ENSMGAG00000001246) ##22	LIPG (ENSMGAG00000001317)	C18orf32 (ENSMGAG00000001347)	ENSMGAG00000021574	GHSR (ENSMGAG00000010038)	TNFSF10 (ENSMGAG00000010032)	NCEH1 (ENSMGAG00000010017)	ECT2 (ENSMGAG00000009941)	SPATA16 (ENSMGAG00000009930)	NLGN1 (ENSMGAG00000009919)	NAALADL2 (ENSMGAG00000009912)	TBL1XR1 (ENSMGAG00000009892)	ENSMGAG00000021926	KCNMB2 (ENSMGAG00000009882)	ZMAT3 (ENSMGAG00000009873)	PIK3CA (ENSMGAG00000009828)
Japanese quail	MODERN SPECIES	699	FECH (ENSCJPG00005004838)	ONECUT2 (ENSCJPG00005004841)	ENSCJPG00005004843	ST8SIA3 (ENSCJPG00005004844)	WDR7 (ENSCJPG00005004845)	TXNL1 (ENSCJPG00005004863)	NEDD4L (ENSCJPG00005004869)	ALPK2 (ENSCJPG00005004887)	MALT1 (ENSCJPG00005004888)	ZNF532 (ENSCJPG00005004899)	SEC11C (ENSCJPG00005004904)	GRP (ENSCJPG00005004907)	RAX (ENSCJPG00005004909)	CPLX4 (ENSCJPG00005004910)	LMAN1 (ENSCJPG00005004911)	ACAA2 (ENSCJPG00005004912) ##22	LIPG (ENSCJPG00005004913)	ENSCJPG00005004917	C18orf32 (ENSCJPG00005004922)	DYM (ENSCJPG00005004924)	SMAD7 (ENSCJPG00005004928)	CTIF (ENSCJPG00005004929)	ZBTB7C (ENSCJPG00005004933)	SMAD2 (ENSCJPG00005004935)	SKOR2 (ENSCJPG00005004937)	IER3IP1 (ENSCJPG00005004943)	HDHD2 (ENSCJPG00005004947)	KATNAL2 (ENSCJPG00005004948)	PIAS2 (ENSCJPG00005004954)	ST8SIA5 (ENSCJPG00005005152)	LOXHD1 (ENSCJPG00005005160)
Anatidae	ANCESTRAL SPECIES	55	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.c	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Pink-footed goose	MODERN SPECIES	124	ENSABRG00000020934	ENSABRG00000020928	STARD6 (ENSABRG00000020923)	POLI (ENSABRG00000020917)	MBD2 (ENSABRG00000020912)	DCC (ENSABRG00000020894)	MEX3C (ENSABRG00000020874)	SMAD4 (ENSABRG00000020871)	ELAC1 (ENSABRG00000020869)	ME2 (ENSABRG00000020867)	MAPK4 (ENSABRG00000020865)	ENSABRG00000020863	ENSABRG00000020860	ENSABRG00000020857	MYO5B (ENSABRG00000018754)	ACAA2 (ENSABRG00000018424) ##22	LIPG (ENSABRG00000018414)	ENSABRG00000018405	C18orf32 (ENSABRG00000018400)	DYM (ENSABRG00000018382)
Duck	MODERN SPECIES	4281	ENSAPLG00000030416	C18orf54 (ENSAPLG00000010526)	STARD6 (ENSAPLG00000021618)	POLI (ENSAPLG00000010510)	MBD2 (ENSAPLG00000010058)	DCC (ENSAPLG00000009368)	MEX3C (ENSAPLG00000003916)	SMAD4 (ENSAPLG00000003924)	ELAC1 (ENSAPLG00000007218)	ME2 (ENSAPLG00000004164)	MAPK4 (ENSAPLG00000004651)	ENSAPLG00000004736	ENSAPLG00000004971	ENSAPLG00000005297	MYO5B (ENSAPLG00000005427)	ACAA2 (ENSAPLG00000006058) ##22	LIPG (ENSAPLG00000008809)	ENSAPLG00000008451	C18orf32 (ENSAPLG00000017090)	DYM (ENSAPLG00000007759)	ENSAPLG00000022343	SMAD7 (ENSAPLG00000001268)	CTIF (ENSAPLG00000014486)	ZBTB7C (ENSAPLG00000016660)	SMAD2 (ENSAPLG00000004964)	SKOR2 (ENSAPLG00000022487)	IER3IP1 (ENSAPLG00000018295)	HDHD2 (ENSAPLG00000004974)	KATNAL2 (ENSAPLG00000005005)	PIAS2 (ENSAPLG00000005190)	ENSAPLG00000022068
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Passeriformes	ANCESTRAL SPECIES	7								ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Great tit	MODERN SPECIES	642								SMAD4 (ENSPMJG00000002065)	ELAC1 (ENSPMJG00000002077)	ME2 (ENSPMJG00000002100)	MAPK4 (ENSPMJG00000002569)	ENSPMJG00000002575	ENSPMJG00000002577	ENSPMJG00000002582	MYO5B (ENSPMJG00000002662)	ACAA2 (ENSPMJG00000002693) ##22	LIPG (ENSPMJG00000002703)	ENSPMJG00000002708	C18orf32 (ENSPMJG00000002712)	DYM (ENSPMJG00000002819)	SMAD7 (ENSPMJG00000002909)	CTIF (ENSPMJG00000002914)	ZBTB7C (ENSPMJG00000002973)	SMAD2 (ENSPMJG00000002989)	SKOR2 (ENSPMJG00000003106)	IER3IP1 (ENSPMJG00000003108)	HDHD2 (ENSPMJG00000003109)	KATNAL2 (ENSPMJG00000003284)	PIAS2 (ENSPMJG00000003313)	ST8SIA5 (ENSPMJG00000003351)	ENSPMJG00000003355
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00940000156873	ENSGT00940000160524	ENSGT00390000018044.b.a	ENSGT00940000154437	ENSGT00390000015600.c.b	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT00940000157435	ENSGT00950000183134.c.b.v	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Passeriformes_g	ANCESTRAL SPECIES	7									ENSGT00730000111224	ENSGT00950000183134.c.b.v	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Passeroidea	ANCESTRAL SPECIES	27									ENSGT00940000157435	ENSGT00950000183134.c.b.v	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872.j	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Zebra finch	MODERN SPECIES	104	HDHD2 (ENSTGUG00000028684)	IER3IP1 (ENSTGUG00000028694)	ENSTGUG00000014263	SMAD2 (ENSTGUG00000000016)	ZBTB7C (ENSTGUG00000000028)	CTIF (ENSTGUG00000000030)	SMAD7 (ENSTGUG00000000034)	DYM (ENSTGUG00000000035)	ENSTGUG00000000043	RPL17 (ENSTGUG00000028072)	ENSTGUG00000028962	ENSTGUG00000000071	ENSTGUG00000000072	ENSTGUG00000018125	MYO5B (ENSTGUG00000000053)	ACAA2 (ENSTGUG00000000058) ##22	LIPG (ENSTGUG00000000061)	RPL17 (ENSTGUG00000000044)	ENSTGUG00000015982	MAPK4 (ENSTGUG00000020659)	ENSTGUG00000020631	ENSTGUG00000024253	ENSTGUG00000022385	ENSTGUG00000028847	ME2 (ENSTGUG00000015853)	SMAD4 (ENSTGUG00000021139)	LMAN1 (ENSTGUG00000014591)	CPLX4 (ENSTGUG00000017479)	RAX (ENSTGUG00000017482)	GRP (ENSTGUG00000023555)	SEC11C (ENSTGUG00000019770)
Common canary	MODERN SPECIES	32												ENSSCAG00000014403	ENSSCAG00000014408	ENSSCAG00000014412	MYO5B (ENSSCAG00000015157)	ACAA2 (ENSSCAG00000016211) ##22	LIPG (ENSSCAG00000016215)	ENSSCAG00000016220	ENSSCAG00000016226	DYM (ENSSCAG00000016230)	SMAD7 (ENSSCAG00000016234)	ENSSCAG00000016237	ZBTB7C (ENSSCAG00000016243)	ENSSCAG00000016249	IER3IP1 (ENSSCAG00000016254)	HDHD2 (ENSSCAG00000016258)	KATNAL2 (ENSSCAG00000016261)	ENSSCAG00000016263	ST8SIA5 (ENSSCAG00000016270)	LOXHD1 (ENSSCAG00000016279)	RNF165 (ENSSCAG00000016296)
Medium ground finch	MODERN SPECIES	68										ELAC1 (ENSGFOG00000013181)	ME2 (ENSGFOG00000013178)	ENSGFOG00000013172	ENSGFOG00000013168	ENSGFOG00000013164	MYO5B (ENSGFOG00000013103)	ACAA2 (ENSGFOG00000013087) ##22	LIPG (ENSGFOG00000013083)	ENSGFOG00000013078	ENSGFOG00000013074	DYM (ENSGFOG00000013055)	SMAD7 (ENSGFOG00000013050)	CTIF (ENSGFOG00000013039)	ZBTB7C (ENSGFOG00000013033)	ENSGFOG00000013025	IER3IP1 (ENSGFOG00000013022)	HDHD2 (ENSGFOG00000013020)	KATNAL2 (ENSGFOG00000013015)	ENSGFOG00000013009	ST8SIA5 (ENSGFOG00000013005)	LOXHD1 (ENSGFOG00000012988)	RNF165 (ENSGFOG00000012981)
Flycatcher	MODERN SPECIES	561												ENSFALG00000024246	ENSFALG00000002576	ENSFALG00000009012	MYO5B (ENSFALG00000008996)	ACAA2 (ENSFALG00000008979) ##22	LIPG (ENSFALG00000008973)	ENSFALG00000008965	C18orf32 (ENSFALG00000008961)	DYM (ENSFALG00000008953)	SMAD7 (ENSFALG00000008945)	CTIF (ENSFALG00000024197)	ENSFALG00000028976	ZBTB7C (ENSFALG00000008940)	SMAD2 (ENSFALG00000008934)	IER3IP1 (ENSFALG00000026006)	HDHD2 (ENSFALG00000008930)	KATNAL2 (ENSFALG00000008928)	PIAS2 (ENSFALG00000008918)	ST8SIA5 (ENSFALG00000008899)	LOXHD1 (ENSFALG00000008897)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b.g	ENSGT00940000159814.b	ENSGT00940000153499.a.d	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.hb.a	ENSGT01030000234535.C	ENSGT00390000018830
Golden eagle	MODERN SPECIES	91	STARD6 (ENSACCG00020009847)	POLI (ENSACCG00020009836)	MBD2 (ENSACCG00020009819)	DCC (ENSACCG00020009773)	ENSACCG00020009660	MEX3C (ENSACCG00020009646)	SMAD4 (ENSACCG00020009624)	ELAC1 (ENSACCG00020009599)	ENSACCG00020009582	ME2 (ENSACCG00020009563)	MAPK4 (ENSACCG00020009547)	ENSACCG00020009534	ENSACCG00020009516	ENSACCG00020009495	MYO5B (ENSACCG00020016656)	ACAA2 (ENSACCG00020016573) ##22	LIPG (ENSACCG00020016557)	RPL17 (ENSACCG00020016537)	C18orf32 (ENSACCG00020016535)	DYM (ENSACCG00020016531)	SMAD7 (ENSACCG00020016530)	CTIF (ENSACCG00020016528)	ZBTB7C (ENSACCG00020016526)	SMAD2 (ENSACCG00020016518)	SKOR2 (ENSACCG00020016513)	IER3IP1 (ENSACCG00020016510)	HDHD2 (ENSACCG00020016506)	KATNAL2 (ENSACCG00020016503)	PIAS2 (ENSACCG00020016500)	ENSACCG00020016495	ST8SIA5 (ENSACCG00020016492)
Kakapo	MODERN SPECIES	19						MBD2 (ENSSHBG00005012233)	DCC (ENSSHBG00005011789)	ENSSHBG00005011679	ENSSHBG00005011666	ELAC1 (ENSSHBG00005011655)	ME2 (ENSSHBG00005011635)	MAPK4 (ENSSHBG00005011621)	ENSSHBG00005011601	ENSSHBG00005011586	MYO5B (ENSSHBG00005011309)	ACAA2 (ENSSHBG00005011224) ##22	LIPG (ENSSHBG00005011192)	ENSSHBG00005011099	C18orf32 (ENSSHBG00005011080)	DYM (ENSSHBG00005011046)	SMAD7 (ENSSHBG00005011025)	ENSSHBG00005011002	ZBTB7C (ENSSHBG00005010973)	ENSSHBG00005010919	ENSSHBG00005010880	IER3IP1 (ENSSHBG00005010867)	HDHD2 (ENSSHBG00005010840)	KATNAL2 (ENSSHBG00005010077)	ENSSHBG00005009962	ENSSHBG00005009938	ST8SIA5 (ENSSHBG00005009922)
African ostrich	MODERN SPECIES	306	ENSSCUG00000001491	C18orf54 (ENSSCUG00000001496)	STARD6 (ENSSCUG00000001499)	POLI (ENSSCUG00000001500)	MBD2 (ENSSCUG00000001502)	DCC (ENSSCUG00000001506)	MEX3C (ENSSCUG00000001508)	SMAD4 (ENSSCUG00000001512)	ELAC1 (ENSSCUG00000001521)	ME2 (ENSSCUG00000001529)	MAPK4 (ENSSCUG00000001532)	ENSSCUG00000001533	ENSSCUG00000001536	ENSSCUG00000001539	MYO5B (ENSSCUG00000001541)	ACAA2 (ENSSCUG00000001545) ##22	LIPG (ENSSCUG00000001552)	ENSSCUG00000001555	C18orf32 (ENSSCUG00000001562)	DYM (ENSSCUG00000001566)	ENSSCUG00000001573	SMAD7 (ENSSCUG00000001575)	CTIF (ENSSCUG00000001577)	ZBTB7C (ENSSCUG00000001580)	SMAD2 (ENSSCUG00000001582)	IER3IP1 (ENSSCUG00000001587)	HDHD2 (ENSSCUG00000001588)	KATNAL2 (ENSSCUG00000001589)	PIAS2 (ENSSCUG00000001592)	ENSSCUG00000001625	ST8SIA5 (ENSSCUG00000001666)
Australian saltwater crocodile	MODERN SPECIES	29	ATP8B1 (ENSCPRG00005014069)	NARS1 (ENSCPRG00005014084)	FECH (ENSCPRG00005014093)	ONECUT2 (ENSCPRG00005014095)	ST8SIA3 (ENSCPRG00005014098)	WDR7 (ENSCPRG00005014111)	TXNL1 (ENSCPRG00005014122)	TCF4 (ENSCPRG00005014144)	CCDC68 (ENSCPRG00005014153)	RAB27B (ENSCPRG00005014155)	ELAC1 (ENSCPRG00005014160)	ME2 (ENSCPRG00005014168)	ENSCPRG00005014216	ENSCPRG00005014610	ENSCPRG00005014614	ACAA2 (ENSCPRG00005014619) ##22	LIPG (ENSCPRG00005014622)	ENSCPRG00005014628	C18orf32 (ENSCPRG00005014637)	DYM (ENSCPRG00005014651)	SMAD7 (ENSCPRG00005014735)	CTIF (ENSCPRG00005014748)	ZBTB7C (ENSCPRG00005014760)	SMAD2 (ENSCPRG00005014766)	IER3IP1 (ENSCPRG00005014776)	HDHD2 (ENSCPRG00005014780)	KATNAL2 (ENSCPRG00005014784)	PIAS2 (ENSCPRG00005014791)	ENSCPRG00005014797	ENSCPRG00005014800	ST8SIA5 (ENSCPRG00005014802)
Cryptodira	ANCESTRAL SPECIES	9	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Emydidae	ANCESTRAL SPECIES	7	ENSGT00940000157449	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Three-toed box turtle	MODERN SPECIES	29	RAB27B (ENSTMTG00000000618)	C18orf54 (ENSTMTG00000000605)	POLI (ENSTMTG00000000593)	MBD2 (ENSTMTG00000000580)	DCC (ENSTMTG00000000292)	MEX3C (ENSTMTG00000000104)	SMAD4 (ENSTMTG00000000068)	ELAC1 (ENSTMTG00000000045)	ME2 (ENSTMTG00000001747)	MAPK4 (ENSTMTG00000001722)	ENSTMTG00000001717	ENSTMTG00000001712	ENSTMTG00000001700	ENSTMTG00000001691	MYO5B (ENSTMTG00000001656)	ACAA2 (ENSTMTG00000001632) ##22	LIPG (ENSTMTG00000001568)	ENSTMTG00000001521	C18orf32 (ENSTMTG00000001516)	DYM (ENSTMTG00000001505)	ENSTMTG00000001494	SMAD7 (ENSTMTG00000001490)	CTIF (ENSTMTG00000001480)	ZBTB7C (ENSTMTG00000001470)	SMAD2 (ENSTMTG00000001451)	SKOR2 (ENSTMTG00000001437)	IER3IP1 (ENSTMTG00000001428)	HDHD2 (ENSTMTG00000001421)	KATNAL2 (ENSTMTG00000001412)	PIAS2 (ENSTMTG00000001368)	ENSTMTG00000001347
painted turtle	MODERN SPECIES	15	ENSCPBG00000025600	C18orf54 (ENSCPBG00000025602)	POLI (ENSCPBG00000025603)	ENSCPBG00000025604	MBD2 (ENSCPBG00000025606)	DCC (ENSCPBG00000025608)	MEX3C (ENSCPBG00000025611)	SMAD4 (ENSCPBG00000025612)	ELAC1 (ENSCPBG00000025613)	ME2 (ENSCPBG00000025614)	MAPK4 (ENSCPBG00000025615)	ENSCPBG00000025618	ENSCPBG00000025620	ENSCPBG00000025621	MYO5B (ENSCPBG00000025623)	ACAA2 (ENSCPBG00000025630) ##22	LIPG (ENSCPBG00000025633)	ENSCPBG00000025638	C18orf32 (ENSCPBG00000025643)	DYM (ENSCPBG00000025646)	SMAD7 (ENSCPBG00000025649)	CTIF (ENSCPBG00000025654)	ZBTB7C (ENSCPBG00000025669)	SMAD2 (ENSCPBG00000025672)	SKOR2 (ENSCPBG00000025680)	IER3IP1 (ENSCPBG00000025681)	HDHD2 (ENSCPBG00000025683)	KATNAL2 (ENSCPBG00000025685)	PIAS2 (ENSCPBG00000025688)	ENSCPBG00000025689	ST8SIA5 (ENSCPBG00000025690)
Testudinidae	ANCESTRAL SPECIES	30	ENSGT00940000157449	ENSGT00390000008823	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000159850	ENSGT01030000234969	ENSGT00940000166139	ENSGT00940000164634	ENSGT01030000235140	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Goode s thornscrub tortoise	MODERN SPECIES	20	RAB27B (ENSGEVG00005019432)	C18orf54 (ENSGEVG00005019438)	POLI (ENSGEVG00005019445)	MBD2 (ENSGEVG00005019458)	ENSGEVG00005019471	DCC (ENSGEVG00005019491)	MEX3C (ENSGEVG00005019557)	SMAD4 (ENSGEVG00005019562)	ELAC1 (ENSGEVG00005019575)	ME2 (ENSGEVG00005019582)	MAPK4 (ENSGEVG00005019610)	ENSGEVG00005019617	ENSGEVG00005019631	ENSGEVG00005019638	MYO5B (ENSGEVG00005019665)	ACAA2 (ENSGEVG00005019715) ##22	LIPG (ENSGEVG00005019740)	ENSGEVG00005019793	C18orf32 (ENSGEVG00005019829)	DYM (ENSGEVG00005019836)	SMAD7 (ENSGEVG00005019841)	CTIF (ENSGEVG00005019849)	ENSGEVG00005019871	ZBTB7C (ENSGEVG00005019877)	ENSGEVG00005019880	SMAD2 (ENSGEVG00005019888)	SKOR2 (ENSGEVG00005019904)	IER3IP1 (ENSGEVG00005019910)	HDHD2 (ENSGEVG00005019914)	KATNAL2 (ENSGEVG00005019929)	PIAS2 (ENSGEVG00005019940)
Abingdon island giant tortoise	MODERN SPECIES	2623													ENSCABG00000011042	ENSCABG00000011034	MYO5B (ENSCABG00000011004)	ACAA2 (ENSCABG00000010994) ##22
Chinese turtle	MODERN SPECIES	2138				ENSPSIG00000014508	MEX3C (ENSPSIG00000014521)	SMAD4 (ENSPSIG00000014614)	ELAC1 (ENSPSIG00000015619)	ENSPSIG00000015649	ENSPSIG00000015770	MAPK4 (ENSPSIG00000015783)	ENSPSIG00000015886	ENSPSIG00000016894	ENSPSIG00000017234	ENSPSIG00000017286	MYO5B (ENSPSIG00000005153)	ACAA2 (ENSPSIG00000005335) ##22	LIPG (ENSPSIG00000005431)	ENSPSIG00000005516	C18orf32 (ENSPSIG00000005560)	DYM (ENSPSIG00000005625)	SMAD7 (ENSPSIG00000006254)	CTIF (ENSPSIG00000006508)	ENSPSIG00000006516	ENSPSIG00000006540	ENSPSIG00000000589	ZBTB7C (ENSPSIG00000006571)	SMAD2 (ENSPSIG00000006646)	HDHD2 (ENSPSIG00000007538)	KATNAL2 (ENSPSIG00000007746)	PIAS2 (ENSPSIG00000007898)	ST8SIA5 (ENSPSIG00000007901)
Mammalia	ANCESTRAL SPECIES	10	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Theria	ANCESTRAL SPECIES	11	ENSGT00390000003755	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT01030000234969	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000008823	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00940000166139	ENSGT00940000164634	ENSGT01070000254624	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Common wonbat	MODERN SPECIES	1028	ENSVURG00010002151	STARD6 (ENSVURG00010002017)	POLI (ENSVURG00010001983)	MBD2 (ENSVURG00010001720)	DCC (ENSVURG00010001452)	MEX3C (ENSVURG00010001250)	SMAD4 (ENSVURG00010001174)	ELAC1 (ENSVURG00010001144)	ME2 (ENSVURG00010001127)	MRO (ENSVURG00010001023)	MAPK4 (ENSVURG00010001000)	ENSVURG00010000853	ENSVURG00010000841	ENSVURG00010000828	MYO5B (ENSVURG00010000687)	ACAA2 (ENSVURG00010000570) ##22	LIPG (ENSVURG00010000510)	C18orf32 (ENSVURG00010000458)	DYM (ENSVURG00010000407)	SMAD7 (ENSVURG00010000339)	CTIF (ENSVURG00010000308)	ZBTB7C (ENSVURG00010000266)	SMAD2 (ENSVURG00010000218)	SKOR2 (ENSVURG00010000155)	IER3IP1 (ENSVURG00010000126)	HDHD2 (ENSVURG00010000102)	KATNAL2 (ENSVURG00010022300)	PIAS2 (ENSVURG00010022283)	ST8SIA5 (ENSVURG00010022274)	ENSVURG00010022268	ENSVURG00010022265
koala	MODERN SPECIES	224			DCC (ENSPCIG00000033928)	ENSPCIG00000036208	MEX3C (ENSPCIG00000031406)	SMAD4 (ENSPCIG00000014951)	ELAC1 (ENSPCIG00000014958)	ME2 (ENSPCIG00000014963)	ENSPCIG00000011548	MAPK4 (ENSPCIG00000011553)	ENSPCIG00000003555	ENSPCIG00000003532	ENSPCIG00000003511	ENSPCIG00000032867	ENSPCIG00000033330	ACAA2 (ENSPCIG00000028228) ##22
Wallaby	MODERN SPECIES	7507																ACAA2 (ENSMEUG00000003220) ##22
Tasmanian devil	MODERN SPECIES		STARD6 (ENSSHAG00000029009)	POLI (ENSSHAG00000004343)	ENSSHAG00000029668	DCC (ENSSHAG00000012360)	ENSSHAG00000024378	MEX3C (ENSSHAG00000009408)	SMAD4 (ENSSHAG00000010344)	ELAC1 (ENSSHAG00000028282)	ME2 (ENSSHAG00000014027)	ENSSHAG00000008004	ENSSHAG00000013029	ENSSHAG00000010788	ENSSHAG00000026350	ENSSHAG00000010062	ENSSHAG00000003364	ACAA2 (ENSSHAG00000001241) ##22	LIPG (ENSSHAG00000004911)	ENSSHAG00000003060	ENSSHAG00000030929	DYM (ENSSHAG00000001181)	SMAD7 (ENSSHAG00000017444)	CTIF (ENSSHAG00000027815)	ZBTB7C (ENSSHAG00000024277)	SMAD2 (ENSSHAG00000012837)	ENSSHAG00000012107	SKOR2 (ENSSHAG00000025447)	HDHD2 (ENSSHAG00000024217)	KATNAL2 (ENSSHAG00000003042)	PIAS2 (ENSSHAG00000005954)	ST8SIA5 (ENSSHAG00000021657)	ENSSHAG00000017868
Opossum	MODERN SPECIES	2	SMAD4 (ENSMODG00000010995)	MEX3C (ENSMODG00000011001)	DCC (ENSMODG00000011028)	MBD2 (ENSMODG00000011041)	POLI (ENSMODG00000011046)	STARD6 (ENSMODG00000011055)	ENSMODG00000025604	ENSMODG00000037484	ENSMODG00000003833	MAPK4 (ENSMODG00000003819)	ENSMODG00000003805	ENSMODG00000003795	ENSMODG00000003773	ENSMODG00000043831	MYO5B (ENSMODG00000003753)	ACAA2 (ENSMODG00000003595) ##22	ENSMODG00000039010	LIPG (ENSMODG00000003564)	ENSMODG00000003534	C18orf32 (ENSMODG00000003518)	ENSMODG00000050373	DYM (ENSMODG00000003506)	SMAD7 (ENSMODG00000039523)	CTIF (ENSMODG00000003464)	ENSMODG00000046916	ZBTB7C (ENSMODG00000003412)	ENSMODG00000042470	SMAD2 (ENSMODG00000003393)	SKOR2 (ENSMODG00000003381)	IER3IP1 (ENSMODG00000037588)	HDHD2 (ENSMODG00000044379)
Eutheria	ANCESTRAL SPECIES	20	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Primates	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.e	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Mouse lemur	MODERN SPECIES	10	POLI (ENSMICG00000008976)	MBD2 (ENSMICG00000008970)	DCC (ENSMICG00000003408)	MEX3C (ENSMICG00000005815)	SMAD4 (ENSMICG00000017525)	ELAC1 (ENSMICG00000017524)	ENSMICG00000017523	ENSMICG00000045071	MRO (ENSMICG00000008008)	MAPK4 (ENSMICG00000015044)	SKA1 (ENSMICG00000006429)	CXXC1 (ENSMICG00000006424)	MBD1 (ENSMICG00000006414)	CFAP53 (ENSMICG00000006410)	MYO5B (ENSMICG00000005287)	ACAA2 (ENSMICG00000005278) ##22	LIPG (ENSMICG00000017104)	ENSMICG00000017102	C18orf32 (ENSMICG00000042525)	DYM (ENSMICG00000017535)	SMAD7 (ENSMICG00000034183)	CTIF (ENSMICG00000010167)	ZBTB7C (ENSMICG00000038331)	SMAD2 (ENSMICG00000007882)	SKOR2 (ENSMICG00000031129)	IER3IP1 (ENSMICG00000043887)	HDHD2 (ENSMICG00000042121)	KATNAL2 (ENSMICG00000007857)	PIAS2 (ENSMICG00000013229)	ST8SIA5 (ENSMICG00000013224)	ENSMICG00000017500
Lemuriformes_a	ANCESTRAL SPECIES	62	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.e	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.s	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Greater bamboo lemur	MODERN SPECIES	606				DCC (ENSPSMG00000020751)	MEX3C (ENSPSMG00000020603)	SMAD4 (ENSPSMG00000020569)	ENSPSMG00000020513	ME2 (ENSPSMG00000020268)	MRO (ENSPSMG00000019937)	MAPK4 (ENSPSMG00000019888)	SKA1 (ENSPSMG00000019864)	CXXC1 (ENSPSMG00000019839)	MBD1 (ENSPSMG00000019377)	CFAP53 (ENSPSMG00000019120)	MYO5B (ENSPSMG00000019098)	ACAA2 (ENSPSMG00000018945) ##22	LIPG (ENSPSMG00000018901)	ENSPSMG00000018857	ENSPSMG00000018846	DYM (ENSPSMG00000018799)	SMAD7 (ENSPSMG00000018729)	CTIF (ENSPSMG00000018691)	ZBTB7C (ENSPSMG00000018657)	SMAD2 (ENSPSMG00000018402)	SKOR2 (ENSPSMG00000018268)	ENSPSMG00000018261	HDHD2 (ENSPSMG00000018254)	ENSPSMG00000018244	KATNAL2 (ENSPSMG00000018239)	PIAS2 (ENSPSMG00000018197)	ST8SIA5 (ENSPSMG00000018127)
Coquerels sifaka	MODERN SPECIES	262																ACAA2 (ENSPCOG00000021233) ##22	LIPG (ENSPCOG00000017489)	ENSPCOG00000024759	C18orf32 (ENSPCOG00000028796)	DYM (ENSPCOG00000010198)	SMAD7 (ENSPCOG00000003237)	CTIF (ENSPCOG00000013391)	ZBTB7C (ENSPCOG00000019918)	SMAD2 (ENSPCOG00000000934)	SKOR2 (ENSPCOG00000016973)	IER3IP1 (ENSPCOG00000000443)	HDHD2 (ENSPCOG00000024401)	KATNAL2 (ENSPCOG00000013440)	PIAS2 (ENSPCOG00000028397)	ST8SIA5 (ENSPCOG00000021186)	LOXHD1 (ENSPCOG00000027350)
Bushbaby	MODERN SPECIES	127				DCC (ENSOGAG00000010546)	MEX3C (ENSOGAG00000030858)	SMAD4 (ENSOGAG00000012081)	ELAC1 (ENSOGAG00000012076)	ME2 (ENSOGAG00000010482)	MRO (ENSOGAG00000016668)	MAPK4 (ENSOGAG00000016663)	SKA1 (ENSOGAG00000016657)	CXXC1 (ENSOGAG00000033715)	MBD1 (ENSOGAG00000003784)	ENSOGAG00000003781	MYO5B (ENSOGAG00000016529)	ACAA2 (ENSOGAG00000016527) ##22	LIPG (ENSOGAG00000016524)	ENSOGAG00000029213	DYM (ENSOGAG00000013935)	SMAD7 (ENSOGAG00000013932)	CTIF (ENSOGAG00000013927)	ZBTB7C (ENSOGAG00000000444)	SMAD2 (ENSOGAG00000000443)	SKOR2 (ENSOGAG00000032696)	IER3IP1 (ENSOGAG00000016626)	HDHD2 (ENSOGAG00000016619)	KATNAL2 (ENSOGAG00000016612)	PIAS2 (ENSOGAG00000012636)	ST8SIA5 (ENSOGAG00000012633)	LOXHD1 (ENSOGAG00000012621)	RNF165 (ENSOGAG00000025147)
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Tarsier	MODERN SPECIES	5575															MYO5B (ENSTSYG00000013836)	ACAA2 (ENSTSYG00000001407) ##22
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Hominoidea	DUPLICATION
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D.k ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Hominidae	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D.k ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a
Pan	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b.gb	ENSGT01030000234626.D.k ##22	ENSGT00940000159394	ENSGT00390000013264.c.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000265012	ENSGT00910000147179	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00910000148711	ENSGT00390000016823.q	ENSGT00940000160474	ENSGT00510000047648
Bonobo	MODERN SPECIES	9	STARD6 (ENSPPAG00000029738)	POLI (ENSPPAG00000033244)	ENSPPAG00000030303	DCC (ENSPPAG00000036460)	ENSPPAG00000038467	SMAD4 (ENSPPAG00000027913)	ELAC1 (ENSPPAG00000036817)	ME2 (ENSPPAG00000036244)	MRO (ENSPPAG00000039840)	MAPK4 (ENSPPAG00000009556)	SKA1 (ENSPPAG00000035202)	CXXC1 (ENSPPAG00000028863)	MBD1 (ENSPPAG00000038886)	CFAP53 (ENSPPAG00000035491)	MYO5B (ENSPPAG00000042788)	ACAA2 (ENSPPAG00000039219) ##22	LIPG (ENSPPAG00000034597)	ENSPPAG00000032490	ENSPPAG00000028848	C18orf32 (ENSPPAG00000027512)	DYM (ENSPPAG00000033907)	ENSPPAG00000031318	CTIF (ENSPPAG00000023554)	ENSPPAG00000041550	ENSPPAG00000033132	ZBTB7C (ENSPPAG00000039903)	SMAD2 (ENSPPAG00000035419)	ENSPPAG00000032994	ENSPPAG00000030667	IER3IP1 (ENSPPAG00000029166)	HDHD2 (ENSPPAG00000028597)
Chimpanzee	MODERN SPECIES	9	STARD6 (ENSPTRG00000010035)	POLI (ENSPTRG00000010034)	MBD2 (ENSPTRG00000010033)	DCC (ENSPTRG00000010031)	MEX3C (ENSPTRG00000010029)	SMAD4 (ENSPTRG00000010028)	ELAC1 (ENSPTRG00000010027)	ME2 (ENSPTRG00000010026)	MRO (ENSPTRG00000010025)	MAPK4 (ENSPTRG00000010024)	SKA1 (ENSPTRG00000010023)	CXXC1 (ENSPTRG00000010022)	MBD1 (ENSPTRG00000010021)	CFAP53 (ENSPTRG00000010020)	MYO5B (ENSPTRG00000010019)	ACAA2 (ENSPTRG00000010016) ##22	LIPG (ENSPTRG00000010015)	ENSPTRG00000043609	RPL17 (ENSPTRG00000010012)	C18H18orf32 (ENSPTRG00000033700)	DYM (ENSPTRG00000010011)	SMAD7 (ENSPTRG00000010010)	CTIF (ENSPTRG00000010009)	ENSPTRG00000045008	ENSPTRG00000050449	ZBTB7C (ENSPTRG00000010006)	SMAD2 (ENSPTRG00000043695)	ENSPTRG00000051707	ENSPTRG00000049336	ENSPTRG00000051288	SKOR2 (ENSPTRG00000033850)
Human	MODERN SPECIES	9	STARD6 (ENSG00000174448)	POLI (ENSG00000101751)	MBD2 (ENSG00000134046)	DCC (ENSG00000187323)	MEX3C (ENSG00000176624)	SMAD4 (ENSG00000141646)	ELAC1 (ENSG00000141642)	ME2 (ENSG00000082212)	MRO (ENSG00000134042)	MAPK4 (ENSG00000141639)	SKA1 (ENSG00000154839)	CXXC1 (ENSG00000154832)	MBD1 (ENSG00000141644)	CFAP53 (ENSG00000172361)	MYO5B (ENSG00000167306)	ACAA2 (ENSG00000167315) ##22	LIPG (ENSG00000101670)	RPL17 (ENSG00000265681)	RPL17-C18orf32 (ENSG00000215472)	C18orf32 (ENSG00000177576)	DYM (ENSG00000141627)	SMAD7 (ENSG00000101665)	CTIF (ENSG00000134030)	ZBTB7C (ENSG00000184828)	SMAD2 (ENSG00000175387)	SKOR2 (ENSG00000215474)	IER3IP1 (ENSG00000134049)	HDHD2 (ENSG00000167220)	ELOA2 (ENSG00000206181)	KATNAL2 (ENSG00000167216)	PIAS2 (ENSG00000078043)
Gorilla	MODERN SPECIES	9	POLI (ENSGGOG00000014321)	MBD2 (ENSGGOG00000013402)	DCC (ENSGGOG00000007343)	ENSGGOG00000025730	ENSGGOG00000014875	ENSGGOG00000036220	SMAD4 (ENSGGOG00000013662)	ELAC1 (ENSGGOG00000002624)	ME2 (ENSGGOG00000010823)	MRO (ENSGGOG00000027618)	MAPK4 (ENSGGOG00000010469)	SKA1 (ENSGGOG00000016643)	CXXC1 (ENSGGOG00000016976)	MBD1 (ENSGGOG00000016966)	MYO5B (ENSGGOG00000008585)	ACAA2 (ENSGGOG00000012552) ##22	LIPG (ENSGGOG00000000595)	RPL17 (ENSGGOG00000026697)	ENSGGOG00000027474	DYM (ENSGGOG00000028457)	ENSGGOG00000010554	CTIF (ENSGGOG00000015204)	ENSGGOG00000037898	ENSGGOG00000022625	ZBTB7C (ENSGGOG00000008438)	SMAD2 (ENSGGOG00000004706)	ENSGGOG00000037285	SKOR2 (ENSGGOG00000006679)	ENSGGOG00000022397	IER3IP1 (ENSGGOG00000027939)	HDHD2 (ENSGGOG00000016414)
Orangutan	MODERN SPECIES	9	POLI (ENSPPYG00000009169)	MBD2 (ENSPPYG00000009168)	DCC (ENSPPYG00000009166)	MEX3C (ENSPPYG00000038962)	SMAD4 (ENSPPYG00000009165)	ELAC1 (ENSPPYG00000029936)	ME2 (ENSPPYG00000009163)	MRO (ENSPPYG00000030050)	ENSPPYG00000041514	MAPK4 (ENSPPYG00000009161)	SKA1 (ENSPPYG00000009159)	CXXC1 (ENSPPYG00000031882)	MBD1 (ENSPPYG00000009158)	CFAP53 (ENSPPYG00000009157)	MYO5B (ENSPPYG00000009155)	ACAA2 (ENSPPYG00000009154) ##22	LIPG (ENSPPYG00000009153)	ENSPPYG00000009151	C18orf32 (ENSPPYG00000033389)	DYM (ENSPPYG00000009149)	SMAD7 (ENSPPYG00000009148)	CTIF (ENSPPYG00000009147)	ZBTB7C (ENSPPYG00000009145)	SMAD2 (ENSPPYG00000009144)	ENSPPYG00000037397	ENSPPYG00000030833	SKOR2 (ENSPPYG00000009142)	IER3IP1 (ENSPPYG00000009140)	HDHD2 (ENSPPYG00000009139)	ENSPPYG00000009137	KATNAL2 (ENSPPYG00000009138)
Gibbon	MODERN SPECIES	19	STARD6 (ENSNLEG00000011931)	POLI (ENSNLEG00000011903)	ENSNLEG00000031955	DCC (ENSNLEG00000011879)	ENSNLEG00000029756	SMAD4 (ENSNLEG00000011859)	ELAC1 (ENSNLEG00000011855)	ME2 (ENSNLEG00000011833)	ENSNLEG00000011826	MAPK4 (ENSNLEG00000011809)	SKA1 (ENSNLEG00000011804)	CXXC1 (ENSNLEG00000011746)	ENSNLEG00000011661	CFAP53 (ENSNLEG00000011645)	MYO5B (ENSNLEG00000011609)	ACAA2 (ENSNLEG00000011576) ##22	LIPG (ENSNLEG00000011556)	ENSNLEG00000034341	ENSNLEG00000029836	C18orf32 (ENSNLEG00000011553)	ENSNLEG00000011539	ENSNLEG00000032202	SMAD7 (ENSNLEG00000034951)	CTIF (ENSNLEG00000011503)	ENSNLEG00000030200	ENSNLEG00000011500	ZBTB7C (ENSNLEG00000011492)	SMAD2 (ENSNLEG00000011463)	ENSNLEG00000011462	ENSNLEG00000029516	ENSNLEG00000029297
Hominoidea	ANCESTRAL SPECIES																	ENSGT01030000234626.D.l ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT01030000234626.D.l ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000155657.db.a.a	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000162057	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e.e.a	ENSGT00390000013488	ENSGT00940000162901	ENSGT00940000159563	ENSGT00940000161156	ENSGT01030000234626.D.l ##22	ENSGT00940000153941.a.b	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.a.a	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146	ENSGT00940000161233	ENSGT00390000012484.f.a.b.b.a.b.b.a	ENSGT00630000089895.x	ENSGT00390000012484.f.a.b.b.b	ENSGT00940000162205	ENSGT00940000162614
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000155657.db.a.a	ENSGT00390000008631.b	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000162057	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e.e.a	ENSGT00390000013488	ENSGT00940000162901	ENSGT00940000159563	ENSGT00940000161156	ENSGT01030000234626.D.l ##22	ENSGT00940000153941.a.b	ENSGT00940000160063.a	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.a.a	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146	ENSGT00940000161233	ENSGT00630000089895.x	ENSGT00390000012484.f.a.b.b.a.b.b.a	ENSGT00390000012484.f.a.b.b.a.a.a.b.a	ENSGT00390000012484.f.a.b.b.a.b.a	ENSGT00390000012484.e.a.b
Pan	ANCESTRAL SPECIES	6	ENSGT00390000015154	ENSGT00940000155657.db.a.a	ENSGT00940000154102.b	ENSGT00940000157503	ENSGT00720000108868	ENSGT00940000162057	ENSGT00940000158963	ENSGT00940000161689	ENSGT00950000182827.B	ENSGT00950000183102.C	ENSGT00390000017780.e.e.a	ENSGT00390000013488	ENSGT00940000162901	ENSGT00940000159563	ENSGT00940000161156	ENSGT01030000234626.D.l ##22	ENSGT00940000153941.a.b	ENSGT00940000160063.a	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.a.a	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146	ENSGT00940000161233	ENSGT00630000089895.x	ENSGT00390000012484.f.a.b.b.a.b.b.a	ENSGT00390000012484.f.a.b.b.a.a.a.b.a	ENSGT00390000012484.f.a.b.b.a.b.a	ENSGT00390000012484.e.a.b
Bonobo	MODERN SPECIES	369	GPKOW (ENSPPAG00000040116)	WDR45 (ENSPPAG00000042027)	CCDC120 (ENSPPAG00000026576)	TFE3 (ENSPPAG00000028832)	GRIPAP1 (ENSPPAG00000040230)	KCND1 (ENSPPAG00000035010)	ENSPPAG00000043025	PIM2 (ENSPPAG00000041108)	SLC35A2 (ENSPPAG00000026694)	PQBP1 (ENSPPAG00000038832)	ENSPPAG00000036547	PCSK1N (ENSPPAG00000034344)	ERAS (ENSPPAG00000026637)	HDAC6 (ENSPPAG00000033426)	GATA1 (ENSPPAG00000034872)	ENSPPAG00000035139 ##22	GLOD5 (ENSPPAG00000042162)	SUV39H1 (ENSPPAG00000030054)	WAS (ENSPPAG00000032465)	WDR13 (ENSPPAG00000030357)	RBM3 (ENSPPAG00000034179)	TBC1D25 (ENSPPAG00000038374)	ENSPPAG00000041670	PORCN (ENSPPAG00000032866)	FTSJ1 (ENSPPAG00000028540)	SLC38A5 (ENSPPAG00000037376)	ENSPPAG00000030049	SSX3 (ENSPPAG00000043286)	ENSPPAG00000035462	ENSPPAG00000034188	ENSPPAG00000029279
Chimpanzee	MODERN SPECIES	972	GPKOW (ENSPTRG00000047603)	WDR45 (ENSPTRG00000021882)	CCDC120 (ENSPTRG00000021880)	TFE3 (ENSPTRG00000021879)	GRIPAP1 (ENSPTRG00000051549)	KCND1 (ENSPTRG00000021877)	OTUD5 (ENSPTRG00000021876)	PIM2 (ENSPTRG00000021875)	SLC35A2 (ENSPTRG00000021874)	PQBP1 (ENSPTRG00000021873)	TIMM17B (ENSPTRG00000021872)	PCSK1N (ENSPTRG00000049734)	ERAS (ENSPTRG00000049150)	ENSPTRG00000021870	GATA1 (ENSPTRG00000048542)	ENSPTRG00000049494 ##22	GLOD5 (ENSPTRG00000045013)	ENSPTRG00000021867	ENSPTRG00000045037	WDR13 (ENSPTRG00000021865)	RBM3 (ENSPTRG00000021864)	TBC1D25 (ENSPTRG00000048815)	EBP (ENSPTRG00000044865)	PORCN (ENSPTRG00000047836)	FTSJ1 (ENSPTRG00000049433)	SLC38A5 (ENSPTRG00000021860)	ENSPTRG00000049383	ENSPTRG00000023969	ENSPTRG00000051358	ENSPTRG00000042703	ENSPTRG00000021921
Gorilla	MODERN SPECIES	523	MAGIX (ENSGGOG00000009033)	GPKOW (ENSGGOG00000013685)	WDR45 (ENSGGOG00000000589)	CCDC120 (ENSGGOG00000000586)	TFE3 (ENSGGOG00000014023)	GRIPAP1 (ENSGGOG00000023074)	ENSGGOG00000002727	PIM2 (ENSGGOG00000011440)	SLC35A2 (ENSGGOG00000011437)	PQBP1 (ENSGGOG00000011431)	ENSGGOG00000011427	PCSK1N (ENSGGOG00000004538)	ERAS (ENSGGOG00000004536)	HDAC6 (ENSGGOG00000004525)	GATA1 (ENSGGOG00000023559)	ENSGGOG00000040202 ##22	GLOD5 (ENSGGOG00000007330)	SUV39H1 (ENSGGOG00000027774)	WAS (ENSGGOG00000039779)	ENSGGOG00000004622	WDR13 (ENSGGOG00000005870)	RBM3 (ENSGGOG00000005864)	TBC1D25 (ENSGGOG00000039233)	ENSGGOG00000043092	PORCN (ENSGGOG00000004796)	FTSJ1 (ENSGGOG00000028552)	SLC38A5 (ENSGGOG00000013314)	ENSGGOG00000042305	ENSGGOG00000026107	ENSGGOG00000010688	ENSGGOG00000024103
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a	ENSGT01030000234539.a.a.b.b
Vervet Monkey	MODERN SPECIES	9	MBD2 (ENSCSAG00000018106)	DCC (ENSCSAG00000018101)	MEX3C (ENSCSAG00000018097)	SMAD4 (ENSCSAG00000018094)	ENSCSAG00000018091	ELAC1 (ENSCSAG00000018090)	ME2 (ENSCSAG00000018086)	MRO (ENSCSAG00000018082)	MAPK4 (ENSCSAG00000018078)	ENSCSAG00000018568	SKA1 (ENSCSAG00000018076)	CXXC1 (ENSCSAG00000018072)	MBD1 (ENSCSAG00000018070)	CFAP53 (ENSCSAG00000018065)	MYO5B (ENSCSAG00000018060)	ACAA2 (ENSCSAG00000018054) ##22	LIPG (ENSCSAG00000018043)	C18orf32 (ENSCSAG00000018029)	DYM (ENSCSAG00000018028)	ENSCSAG00000018569	SMAD7 (ENSCSAG00000018024)	CTIF (ENSCSAG00000018021)	ZBTB7C (ENSCSAG00000018018)	SMAD2 (ENSCSAG00000018016)	SKOR2 (ENSCSAG00000018012)	IER3IP1 (ENSCSAG00000018009)	HDHD2 (ENSCSAG00000018007)	KATNAL2 (ENSCSAG00000018001)	ELOA2 (ENSCSAG00000018570)	PIAS2 (ENSCSAG00000017995)	ST8SIA5 (ENSCSAG00000017993)
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT01020000230346.E.s.b.b	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Macaca	ANCESTRAL SPECIES	22	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT01020000230346.E.s.b.b	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.a.b.b	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302
Pig-tailed macaque	MODERN SPECIES	155	POLI (ENSMNEG00000041620)	MBD2 (ENSMNEG00000028536)	DCC (ENSMNEG00000044541)	MEX3C (ENSMNEG00000037450)	SMAD4 (ENSMNEG00000030827)	ELAC1 (ENSMNEG00000034310)	ME2 (ENSMNEG00000034912)	MRO (ENSMNEG00000033026)	ENSMNEG00000000269	MAPK4 (ENSMNEG00000038618)	SKA1 (ENSMNEG00000029687)	CXXC1 (ENSMNEG00000028715)	MBD1 (ENSMNEG00000038822)	CFAP53 (ENSMNEG00000015915)	MYO5B (ENSMNEG00000033529)	ACAA2 (ENSMNEG00000037789) ##22	LIPG (ENSMNEG00000043610)	ENSMNEG00000035945	C18orf32 (ENSMNEG00000037414)	DYM (ENSMNEG00000030545)	SMAD7 (ENSMNEG00000039694)	CTIF (ENSMNEG00000039395)	ENSMNEG00000045230	ENSMNEG00000034460	ZBTB7C (ENSMNEG00000031886)	SMAD2 (ENSMNEG00000037330)	ENSMNEG00000038031	IER3IP1 (ENSMNEG00000030543)	ENSMNEG00000038574	KATNAL2 (ENSMNEG00000029817)	ENSMNEG00000040070
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000004856.w.a.a.b.b.a.b.b.a.b	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00940000155478.r	ENSGT01100000263493.a.b.a.a.b.b.a.b.a.a.a.a.b.a.a	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a.a
Rhesus	MODERN SPECIES	9	MEX3C (ENSMMUG00000023652)	SMAD4 (ENSMMUG00000018334)	ELAC1 (ENSMMUG00000003127)	ME2 (ENSMMUG00000022001)	MRO (ENSMMUG00000022472)	MAPK4 (ENSMMUG00000017290)	ENSMMUG00000063161	SKA1 (ENSMMUG00000000719)	ENSMMUG00000049659	CXXC1 (ENSMMUG00000009051)	MBD1 (ENSMMUG00000009050)	ENSMMUG00000064957	ENSMMUG00000052620	MYO5B (ENSMMUG00000003041)	ENSMMUG00000064909	ACAA2 (ENSMMUG00000003040) ##22	LIPG (ENSMMUG00000019054)	ENSMMUG00000038584	ENSMMUG00000064858	RPL17 (ENSMMUG00000018837)	DYM (ENSMMUG00000001760)	SMAD7 (ENSMMUG00000056276)	CTIF (ENSMMUG00000020898)	ZBTB7C (ENSMMUG00000015704)	SMAD2 (ENSMMUG00000007816)	ENSMMUG00000050569	SKOR2 (ENSMMUG00000048459)	IER3IP1 (ENSMMUG00000059289)	HDHD2 (ENSMMUG00000010999)	KATNAL2 (ENSMMUG00000015952)	ELOA2 (ENSMMUG00000044172)
Crab-eating macaque	MODERN SPECIES	9	ENSMFAG00000053354	ENSMFAG00000060015	MEX3C (ENSMFAG00000056117)	SMAD4 (ENSMFAG00000037003)	ELAC1 (ENSMFAG00000004789)	ME2 (ENSMFAG00000004061)	MRO (ENSMFAG00000050667)	ENSMFAG00000036294	ENSMFAG00000011076	SKA1 (ENSMFAG00000000025)	ENSMFAG00000056437	CXXC1 (ENSMFAG00000040503)	MBD1 (ENSMFAG00000026335)	CFAP53 (ENSMFAG00000038983)	MYO5B (ENSMFAG00000007943)	ACAA2 (ENSMFAG00000040240) ##22	ENSMFAG00000052720	LIPG (ENSMFAG00000038227)	ENSMFAG00000036042	ENSMFAG00000057888	RPL17 (ENSMFAG00000042744)	C18orf32 (ENSMFAG00000030546)	DYM (ENSMFAG00000031987)	ENSMFAG00000065559	ENSMFAG00000064429	SMAD7 (ENSMFAG00000042998)	ENSMFAG00000061902	CTIF (ENSMFAG00000037903)	ENSMFAG00000052298	ENSMFAG00000058784	ZBTB7C (ENSMFAG00000031667)
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a
Cercopithecinae_d	ANCESTRAL SPECIES	40	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b.o	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000004856.w.a.a.b.b.a.b.b.a.b	ENSGT01020000230346.E.s.b.b	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01100000264016	ENSGT01030000234542.b.b.a.a.a.b.t.a	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b.a.a
Sooty mangabey	MODERN SPECIES	190	MBD2 (ENSCATG00000040536)	DCC (ENSCATG00000021673)	MEX3C (ENSCATG00000031557)	SMAD4 (ENSCATG00000041132)	ELAC1 (ENSCATG00000036385)	ME2 (ENSCATG00000034688)	MRO (ENSCATG00000041212)	MAPK4 (ENSCATG00000016401)	ENSCATG00000017689	ENSCATG00000033940	SKA1 (ENSCATG00000039979)	CXXC1 (ENSCATG00000035708)	MBD1 (ENSCATG00000029959)	CFAP53 (ENSCATG00000026928)	MYO5B (ENSCATG00000038137)	ACAA2 (ENSCATG00000031450) ##22	LIPG (ENSCATG00000033603)	ENSCATG00000043658	ENSCATG00000037257	ENSCATG00000018328	DYM (ENSCATG00000031272)	ENSCATG00000037245	SMAD7 (ENSCATG00000037681)	CTIF (ENSCATG00000038134)	ENSCATG00000045052	ENSCATG00000005038	ZBTB7C (ENSCATG00000044413)	SMAD2 (ENSCATG00000003842)	SKOR2 (ENSCATG00000035815)	IER3IP1 (ENSCATG00000035811)	HDHD2 (ENSCATG00000035277)
Drill	MODERN SPECIES	1607		ENSMLEG00000012613	MEX3C (ENSMLEG00000040189)	SMAD4 (ENSMLEG00000027611)	ELAC1 (ENSMLEG00000042560)	ME2 (ENSMLEG00000041492)	MRO (ENSMLEG00000038700)	MAPK4 (ENSMLEG00000031017)	ENSMLEG00000039079	ENSMLEG00000026616	SKA1 (ENSMLEG00000030498)	CXXC1 (ENSMLEG00000032181)	MBD1 (ENSMLEG00000043121)	CFAP53 (ENSMLEG00000010151)	MYO5B (ENSMLEG00000030497)	ACAA2 (ENSMLEG00000035935) ##22	LIPG (ENSMLEG00000028146)	RPL17 (ENSMLEG00000041470)	C18orf32 (ENSMLEG00000042407)	DYM (ENSMLEG00000036447)	ENSMLEG00000038861	CTIF (ENSMLEG00000041132)	ENSMLEG00000037738	ENSMLEG00000038973	ZBTB7C (ENSMLEG00000034896)	SMAD2 (ENSMLEG00000037596)	ENSMLEG00000040989
Olive baboon	MODERN SPECIES	10	MBD2 (ENSPANG00000021858)	ENSPANG00000043603	ENSPANG00000045144	ENSPANG00000037100	DCC (ENSPANG00000006451)	MEX3C (ENSPANG00000006226)	SMAD4 (ENSPANG00000024703)	ELAC1 (ENSPANG00000026392)	ME2 (ENSPANG00000016868)	MRO (ENSPANG00000011894)	MAPK4 (ENSPANG00000009483)	SKA1 (ENSPANG00000030336)	CXXC1 (ENSPANG00000009435)	MBD1 (ENSPANG00000010867)	MYO5B (ENSPANG00000022089)	ACAA2 (ENSPANG00000002878) ##22	LIPG (ENSPANG00000024235)	ENSPANG00000031295	C18orf32 (ENSPANG00000040941)	ENSPANG00000037588	ENSPANG00000046129	SMAD7 (ENSPANG00000025519)	CTIF (ENSPANG00000017087)	ZBTB7C (ENSPANG00000016942)	SMAD2 (ENSPANG00000025520)	SKOR2 (ENSPANG00000017535)	IER3IP1 (ENSPANG00000041314)	HDHD2 (ENSPANG00000010312)	ELOA2 (ENSPANG00000049945)	KATNAL2 (ENSPANG00000017088)	PIAS2 (ENSPANG00000016213)
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	583															ENSGT00940000155402.a.b	ENSGT01030000234626.D.m ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b.b.b	ENSGT00950000183010.a.a.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772
Golden snub-nosed monkey	MODERN SPECIES	3093															MYO5B (ENSRROG00000036865)	ACAA2 (ENSRROG00000034218) ##22	LIPG (ENSRROG00000032692)	ENSRROG00000029369	ENSRROG00000041859	DYM (ENSRROG00000011631)
Black snub-nosed monkey	MODERN SPECIES	923															MYO5B (ENSRBIG00000038069)	ENSRBIG00000039813 ##22	LIPG (ENSRBIG00000030348)	ENSRBIG00000041788	C18orf32 (ENSRBIG00000031626)	DYM (ENSRBIG00000033553)
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT01030000234626.D.n ##22
Black snub-nosed monkey	MODERN SPECIES	900																ENSRBIG00000015482 ##22
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000154430.e.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Cebidae	ANCESTRAL SPECIES	28	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000154430.e.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b
Marmoset	MODERN SPECIES	4	MBD2 (ENSCJAG00000040234)	DCC (ENSCJAG00000001868)	ENSCJAG00000084840	MEX3C (ENSCJAG00000072158)	SMAD4 (ENSCJAG00000001910)	ELAC1 (ENSCJAG00000001925)	MRO (ENSCJAG00000041277)	ME2 (ENSCJAG00000001929)	MAPK4 (ENSCJAG00000001974)	ENSCJAG00000086150	SKA1 (ENSCJAG00000084830)	ENSCJAG00000005044	MBD1 (ENSCJAG00000004959)	CFAP53 (ENSCJAG00000004928)	MYO5B (ENSCJAG00000004857)	ACAA2 (ENSCJAG00000004820) ##22	ENSCJAG00000073947	ENSCJAG00000078071	LIPG (ENSCJAG00000004803)	ENSCJAG00000004779	ENSCJAG00000076436	DYM (ENSCJAG00000004754)	ENSCJAG00000060917	ENSCJAG00000067581	SMAD7 (ENSCJAG00000039611)	CTIF (ENSCJAG00000004729)	ZBTB7C (ENSCJAG00000004704)	ENSCJAG00000081448	SMAD2 (ENSCJAG00000004630)	ENSCJAG00000071063	SKOR2 (ENSCJAG00000048253)
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000154430.e.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.c	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.e.b	ENSGT00390000018741.ab	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741.`b.a	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b
Capuchin	MODERN SPECIES	60				ENSCCAG00000015175	MEX3C (ENSCCAG00000034228)	SMAD4 (ENSCCAG00000033380)	ELAC1 (ENSCCAG00000035586)	ME2 (ENSCCAG00000033776)	MRO (ENSCCAG00000035093)	MAPK4 (ENSCCAG00000030009)	SKA1 (ENSCCAG00000011220)	CXXC1 (ENSCCAG00000013415)	MBD1 (ENSCCAG00000034600)	CFAP53 (ENSCCAG00000037510)	MYO5B (ENSCCAG00000027793)	ACAA2 (ENSCCAG00000026857) ##22	ENSCCAG00000001466	LIPG (ENSCCAG00000023643)	RPL17 (ENSCCAG00000024026)	ENSCCAG00000023815	DYM (ENSCCAG00000032314)	ENSCCAG00000037376	SMAD7 (ENSCCAG00000033513)	CTIF (ENSCCAG00000022758)	ZBTB7C (ENSCCAG00000034868)	SMAD2 (ENSCCAG00000036243)	ENSCCAG00000037809	SKOR2 (ENSCCAG00000021025)	IER3IP1 (ENSCCAG00000036067)	HDHD2 (ENSCCAG00000022419)	KATNAL2 (ENSCCAG00000027056)
Bolivian squirrel monkey	MODERN SPECIES	58	DCC (ENSSBOG00000032419)	ENSSBOG00000032319	ENSSBOG00000017363	ENSSBOG00000025727	MEX3C (ENSSBOG00000024094)	SMAD4 (ENSSBOG00000029676)	ELAC1 (ENSSBOG00000019881)	ME2 (ENSSBOG00000021989)	ENSSBOG00000032219	MRO (ENSSBOG00000029231)	MAPK4 (ENSSBOG00000034699)	ENSSBOG00000029260	CXXC1 (ENSSBOG00000020380)	MBD1 (ENSSBOG00000027169)	MYO5B (ENSSBOG00000024887)	ACAA2 (ENSSBOG00000029056) ##22	ENSSBOG00000034832	LIPG (ENSSBOG00000017170)	ENSSBOG00000026485	C18orf32 (ENSSBOG00000027273)	DYM (ENSSBOG00000031374)	SMAD7 (ENSSBOG00000028839)	CTIF (ENSSBOG00000028468)	ZBTB7C (ENSSBOG00000027938)	SMAD2 (ENSSBOG00000036148)	ENSSBOG00000019181	ENSSBOG00000019888	IER3IP1 (ENSSBOG00000028824)	HDHD2 (ENSSBOG00000023121)	KATNAL2 (ENSSBOG00000024912)	ENSSBOG00000029772
Mas night monkey	MODERN SPECIES	426										MAPK4 (ENSANAG00000030817)	ENSANAG00000027371	CXXC1 (ENSANAG00000026512)	MBD1 (ENSANAG00000036253)	CFAP53 (ENSANAG00000038121)	MYO5B (ENSANAG00000027712)	ACAA2 (ENSANAG00000033683) ##22	LIPG (ENSANAG00000020805)	ENSANAG00000038237	ENSANAG00000032933	DYM (ENSANAG00000029190)	SMAD7 (ENSANAG00000028079)	CTIF (ENSANAG00000024925)	ZBTB7C (ENSANAG00000033116)	SMAD2 (ENSANAG00000031458)	ENSANAG00000030706	SKOR2 (ENSANAG00000030804)	IER3IP1 (ENSANAG00000023921)	ENSANAG00000023759	HDHD2 (ENSANAG00000036024)	KATNAL2 (ENSANAG00000030359)	ENSANAG00000027601
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Tree shrew	MODERN SPECIES	5614														ENSTBEG00000002866	MYO5B (ENSTBEG00000002414)	ACAA2 (ENSTBEG00000002106) ##22
Glires	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Lagomorpha	ANCESTRAL SPECIES	29	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000265446	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b.k	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Rabbit	MODERN SPECIES	20	ENSOCUG00000033920	DCC (ENSOCUG00000000384)	ENSOCUG00000038228	MEX3C (ENSOCUG00000012549)	SMAD4 (ENSOCUG00000003929)	ELAC1 (ENSOCUG00000009509)	ME2 (ENSOCUG00000012433)	MRO (ENSOCUG00000007663)	MAPK4 (ENSOCUG00000013016)	SKA1 (ENSOCUG00000007927)	CXXC1 (ENSOCUG00000025756)	MBD1 (ENSOCUG00000006554)	ENSOCUG00000017123	ENSOCUG00000037569	MYO5B (ENSOCUG00000009547)	ACAA2 (ENSOCUG00000016540) ##22	LIPG (ENSOCUG00000013471)	ENSOCUG00000012485	ENSOCUG00000027094	ENSOCUG00000038051	DYM (ENSOCUG00000015851)	SMAD7 (ENSOCUG00000024309)	CTIF (ENSOCUG00000024842)	ENSOCUG00000026631	ZBTB7C (ENSOCUG00000022348)	SMAD2 (ENSOCUG00000011290)	ENSOCUG00000027573	IER3IP1 (ENSOCUG00000012555)	HDHD2 (ENSOCUG00000006979)	ENSOCUG00000035984	ENSOCUG00000006940
Pika	MODERN SPECIES	3097													MBD1 (ENSOPRG00000007647)	ENSOPRG00000007632	MYO5B (ENSOPRG00000007587)	ACAA2 (ENSOPRG00000007567) ##22
Rodentia	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Myomorpha	ANCESTRAL SPECIES	35	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Muroidea	ANCESTRAL SPECIES	13	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Chinese hamster chok1gshd	MODERN SPECIES	153	Poli (ENSCGRG00001024509)	Mbd2 (ENSCGRG00001017384)	ENSCGRG00001004249	Dcc (ENSCGRG00001019199)	Mex3c (ENSCGRG00001014162)	Smad4 (ENSCGRG00001022246)	Elac1 (ENSCGRG00001008766)	Me2 (ENSCGRG00001023816)	Mro (ENSCGRG00001020055)	Mapk4 (ENSCGRG00001013070)	Ska1 (ENSCGRG00001004278)	Cxxc1 (ENSCGRG00001024166)	Mbd1 (ENSCGRG00001014843)	ENSCGRG00001020552	Myo5b (ENSCGRG00001023182)	Acaa2 (ENSCGRG00001003556) ##22	Lipg (ENSCGRG00001017705)	Rpl17 (ENSCGRG00001020137)	BC031181 (ENSCGRG00001018350)	ENSCGRG00001015256	Dym (ENSCGRG00001007723)	Smad7 (ENSCGRG00001017713)	Ctif (ENSCGRG00001020158)
Golden Hamster	MODERN SPECIES	680										Mapk4 (ENSMAUG00000017116)	Ska1 (ENSMAUG00000003566)	Cxxc1 (ENSMAUG00000015537)	ENSMAUG00000021798	ENSMAUG00000010397	Myo5b (ENSMAUG00000000930)	Acaa2 (ENSMAUG00000018671) ##22	Lipg (ENSMAUG00000000351)	Rpl17 (ENSMAUG00000015927)	BC031181 (ENSMAUG00000019483)	Dym (ENSMAUG00000017721)	ENSMAUG00000020878	Smad7 (ENSMAUG00000020326)	Ctif (ENSMAUG00000000656)	Zbtb7c (ENSMAUG00000000374)	Smad2 (ENSMAUG00000006737)	Skor2 (ENSMAUG00000016006)	ENSMAUG00000012040	Hdhd2 (ENSMAUG00000019526)	Katnal2 (ENSMAUG00000019836)	Pias2 (ENSMAUG00000014565)	St8sia5 (ENSMAUG00000011966)
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Prairie vole	MODERN SPECIES	5	Poli (ENSMOCG00000018932)	Mbd2 (ENSMOCG00000016997)	ENSMOCG00000002868	Dcc (ENSMOCG00000002873)	Mex3c (ENSMOCG00000012424)	Smad4 (ENSMOCG00000014880)	Elac1 (ENSMOCG00000013625)	ENSMOCG00000019370	Mro (ENSMOCG00000001134)	Mapk4 (ENSMOCG00000017622)	Ska1 (ENSMOCG00000000860)	Cxxc1 (ENSMOCG00000018819)	ENSMOCG00000011976	ENSMOCG00000008152	Myo5b (ENSMOCG00000022368)	Acaa2 (ENSMOCG00000004236) ##22	Lipg (ENSMOCG00000020738)	Rpl17 (ENSMOCG00000012741)	BC031181 (ENSMOCG00000012446)	Dym (ENSMOCG00000022593)	Smad7 (ENSMOCG00000001269)	Ctif (ENSMOCG00000020507)	Zbtb7c (ENSMOCG00000017640)	Smad2 (ENSMOCG00000017648)	Skor2 (ENSMOCG00000018264)	ENSMOCG00000009073	Hdhd2 (ENSMOCG00000008063)	Katnal2 (ENSMOCG00000011716)	Pias2 (ENSMOCG00000015605)	St8sia5 (ENSMOCG00000011361)	Loxhd1 (ENSMOCG00000016732)
Northern American deer mouse	MODERN SPECIES	10	Poli (ENSPEMG00000016273)	Mbd2 (ENSPEMG00000020730)	Dcc (ENSPEMG00000020947)	ENSPEMG00000003058	ENSPEMG00000022227	Smad4 (ENSPEMG00000013699)	Elac1 (ENSPEMG00000002394)	Me2 (ENSPEMG00000031101)	Mro (ENSPEMG00000022802)	Mapk4 (ENSPEMG00000023783)	Ska1 (ENSPEMG00000021084)	Cxxc1 (ENSPEMG00000022532)	Mbd1 (ENSPEMG00000022630)	Cfap53 (ENSPEMG00000024092)	Myo5b (ENSPEMG00000020539)	Acaa2 (ENSPEMG00000022034) ##22	ENSPEMG00000025726	ENSPEMG00000028900	Lipg (ENSPEMG00000021868)	Rpl17 (ENSPEMG00000001520)	Dym (ENSPEMG00000020826)	Smad7 (ENSPEMG00000021331)	Ctif (ENSPEMG00000022746)	Zbtb7c (ENSPEMG00000020629)	Smad2 (ENSPEMG00000020383)	Skor2 (ENSPEMG00000022190)	ENSPEMG00000026193	Hdhd2 (ENSPEMG00000020912)	Katnal2 (ENSPEMG00000021096)	Pias2 (ENSPEMG00000022220)	St8sia5 (ENSPEMG00000022119)
Murinae	ANCESTRAL SPECIES	17	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Mus	ANCESTRAL SPECIES	19	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Mus_A	ANCESTRAL SPECIES	19	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Mus_B	ANCESTRAL SPECIES	19	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000168426	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Mus_C	ANCESTRAL SPECIES	16	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00860000135602	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648.c	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
spretus	MODERN SPECIES	9	Poli (MGP_SPRETEiJ_G0023300)	Mbd2 (MGP_SPRETEiJ_G0023301)	Dcc (MGP_SPRETEiJ_G0023302)	Mex3c (MGP_SPRETEiJ_G0023303)	Mbd1 (MGP_SPRETEiJ_G0023304)	Smad4 (MGP_SPRETEiJ_G0023305)	Elac1 (MGP_SPRETEiJ_G0023306)	Me2 (MGP_SPRETEiJ_G0023307)	Mro (MGP_SPRETEiJ_G0023308)	Mapk4 (MGP_SPRETEiJ_G0023309)	MGP_SPRETEiJ_G0023310	Ska1 (MGP_SPRETEiJ_G0023311)	Cxxc1 (MGP_SPRETEiJ_G0023312)	Cfap53 (MGP_SPRETEiJ_G0023313)	Myo5b (MGP_SPRETEiJ_G0023314)	Acaa2 (MGP_SPRETEiJ_G0023315) ##22	Lipg (MGP_SPRETEiJ_G0023316)	MGP_SPRETEiJ_G0023317	BC031181 (MGP_SPRETEiJ_G0023318)	Dym (MGP_SPRETEiJ_G0023319)	Smad7 (MGP_SPRETEiJ_G0023320)	Ctif (MGP_SPRETEiJ_G0023321)	Zbtb7c (MGP_SPRETEiJ_G0023322)	Smad2 (MGP_SPRETEiJ_G0023323)	Skor2 (MGP_SPRETEiJ_G0023324)	MGP_SPRETEiJ_G0023325	Hdhd2 (MGP_SPRETEiJ_G0023326)	Katnal2 (MGP_SPRETEiJ_G0023327)	Pias2 (MGP_SPRETEiJ_G0023328)	MGP_SPRETEiJ_G0023329	St8sia5 (MGP_SPRETEiJ_G0023330)
Steppe mouse	MODERN SPECIES	2538														ENSMSIG00000023277	Myo5b (ENSMSIG00000023306)	Acaa2 (ENSMSIG00000023535) ##22
Mouse	MODERN SPECIES	9	Stard6 (ENSMUSG00000079608)	Poli (ENSMUSG00000038425)	Mbd2 (ENSMUSG00000024513)	Dcc (ENSMUSG00000060534)	Mex3c (ENSMUSG00000037253)	Smad4 (ENSMUSG00000024515)	Elac1 (ENSMUSG00000036941)	Me2 (ENSMUSG00000024556)	Mro (ENSMUSG00000064036)	Mapk4 (ENSMUSG00000024558)	Ska1 (ENSMUSG00000036223)	Cxxc1 (ENSMUSG00000024560)	Mbd1 (ENSMUSG00000024561)	Cfap53 (ENSMUSG00000035394)	Myo5b (ENSMUSG00000025885)	Acaa2 (ENSMUSG00000036880) ##22	Lipg (ENSMUSG00000053846)	Rpl17 (ENSMUSG00000062328)	BC031181 (ENSMUSG00000036299)	Dym (ENSMUSG00000035765)	Smad7 (ENSMUSG00000025880)	Ctif (ENSMUSG00000052928)	Zbtb7c (ENSMUSG00000044646)	Smad2 (ENSMUSG00000024563)	Skor2 (ENSMUSG00000091519)	Ier3ip1 (ENSMUSG00000090000)	Hdhd2 (ENSMUSG00000025421)	Katnal2 (ENSMUSG00000025420)	Pias2 (ENSMUSG00000025423)	St8sia5 (ENSMUSG00000025425)	Loxhd1 (ENSMUSG00000032818)
Ryukyu mouse	MODERN SPECIES	9	Stard6 (MGP_CAROLIEiJ_G0022387)	Poli (MGP_CAROLIEiJ_G0022388)	Mbd2 (MGP_CAROLIEiJ_G0022389)	Dcc (MGP_CAROLIEiJ_G0022390)	Mex3c (MGP_CAROLIEiJ_G0022391)	Smad4 (MGP_CAROLIEiJ_G0022392)	Elac1 (MGP_CAROLIEiJ_G0022393)	Me2 (MGP_CAROLIEiJ_G0022394)	Mro (MGP_CAROLIEiJ_G0022395)	Mapk4 (MGP_CAROLIEiJ_G0022396)	MGP_CAROLIEiJ_G0022397	Ska1 (MGP_CAROLIEiJ_G0022398)	Cxxc1 (MGP_CAROLIEiJ_G0022399)	Cfap53 (MGP_CAROLIEiJ_G0022400)	Myo5b (MGP_CAROLIEiJ_G0022401)	Acaa2 (MGP_CAROLIEiJ_G0022402) ##22	Lipg (MGP_CAROLIEiJ_G0022403)	Rpl17 (MGP_CAROLIEiJ_G0022404)	BC031181 (MGP_CAROLIEiJ_G0022405)	Dym (MGP_CAROLIEiJ_G0022406)	Smad7 (MGP_CAROLIEiJ_G0022407)	Ctif (MGP_CAROLIEiJ_G0022408)	Zbtb7c (MGP_CAROLIEiJ_G0022409)	Smad2 (MGP_CAROLIEiJ_G0022410)	Skor2 (MGP_CAROLIEiJ_G0022411)	MGP_CAROLIEiJ_G0022412	Hdhd2 (MGP_CAROLIEiJ_G0022413)	Katnal2 (MGP_CAROLIEiJ_G0022414)	Pias2 (MGP_CAROLIEiJ_G0022415)	MGP_CAROLIEiJ_G0022416	St8sia5 (MGP_CAROLIEiJ_G0022417)
Shrew mouse	MODERN SPECIES	6	Poli (MGP_PahariEiJ_G0019116)	Mbd2 (MGP_PahariEiJ_G0019117)	Dcc (MGP_PahariEiJ_G0019118)	Mex3c (MGP_PahariEiJ_G0019119)	Smad4 (MGP_PahariEiJ_G0019120)	Elac1 (MGP_PahariEiJ_G0019121)	Me2 (MGP_PahariEiJ_G0019122)	MGP_PahariEiJ_G0019123	Mapk4 (MGP_PahariEiJ_G0019124)	MGP_PahariEiJ_G0019125	Ska1 (MGP_PahariEiJ_G0019126)	Cxxc1 (MGP_PahariEiJ_G0019127)	MGP_PahariEiJ_G0019128	Cfap53 (MGP_PahariEiJ_G0019129)	Myo5b (MGP_PahariEiJ_G0019130)	Acaa2 (MGP_PahariEiJ_G0019131) ##22	Lipg (MGP_PahariEiJ_G0019132)	Rpl17 (MGP_PahariEiJ_G0019133)	BC031181 (MGP_PahariEiJ_G0019134)	Dym (MGP_PahariEiJ_G0019135)	Smad7 (MGP_PahariEiJ_G0019136)	Ctif (MGP_PahariEiJ_G0019137)	Zbtb7c (MGP_PahariEiJ_G0019138)	Smad2 (MGP_PahariEiJ_G0019139)	Skor2 (MGP_PahariEiJ_G0019140)	MGP_PahariEiJ_G0019141	Hdhd2 (MGP_PahariEiJ_G0019142)	Katnal2 (MGP_PahariEiJ_G0019143)	Pias2 (MGP_PahariEiJ_G0019144)	MGP_PahariEiJ_G0019145	St8sia5 (MGP_PahariEiJ_G0019146)
Rat	MODERN SPECIES	9	ENSRNOG00000063041	Dcc (ENSRNOG00000033099)	AABR07032457.1 (ENSRNOG00000015806)	Mex3c (ENSRNOG00000015777)	Smad4 (ENSRNOG00000051965)	Elac1 (ENSRNOG00000000113)	Me2 (ENSRNOG00000015582)	LOC680512 (ENSRNOG00000033808)	Mro (ENSRNOG00000024426)	Mapk4 (ENSRNOG00000015401)	Ska1 (ENSRNOG00000015275)	Cxxc1 (ENSRNOG00000014614)	Cfap53 (ENSRNOG00000014585)	Mbd1 (ENSRNOG00000024104)	Myo5b (ENSRNOG00000014104)	Acaa2 (ENSRNOG00000013766) ##22	Lipg (ENSRNOG00000018694)	Slc25a6 (ENSRNOG00000042387)	Rpl17 (ENSRNOG00000018680)	Dym (ENSRNOG00000018425)	Smad7 (ENSRNOG00000018359)	Ctif (ENSRNOG00000018342)	ENSRNOG00000067472	Zbtb7c (ENSRNOG00000047924)	Smad2 (ENSRNOG00000018140)	Skor2 (ENSRNOG00000018006)	Ier3ip1 (ENSRNOG00000043171)	Katnal2 (ENSRNOG00000017788)	Pias2 (ENSRNOG00000017493)	St8sia5 (ENSRNOG00000022691)	Loxhd1 (ENSRNOG00000017410)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1776															ENSNGAG00000016233	Acaa2 (ENSNGAG00000001143) ##22
Lesser Egyptian jerboa	MODERN SPECIES	60	Gal (ENSJJAG00000015277)	Tesmin (ENSJJAG00000019166)	Cpt1a (ENSJJAG00000019639)	Mrpl21 (ENSJJAG00000018455)	Ighmbp2 (ENSJJAG00000022964)	Mrgprf (ENSJJAG00000017168) ##27	Tpcn2 (ENSJJAG00000019473)	ENSJJAG00000000500	Mro (ENSJJAG00000018866)	ENSJJAG00000007096	Ska1 (ENSJJAG00000008382)	Cxxc1 (ENSJJAG00000022206)	Mbd1 (ENSJJAG00000022859)	ENSJJAG00000023145	ENSJJAG00000012661	Acaa2 (ENSJJAG00000023029) ##22	Lipg (ENSJJAG00000021249)	ENSJJAG00000017312	BC031181 (ENSJJAG00000013965)	Dym (ENSJJAG00000000543)	ENSJJAG00000011899	ENSJJAG00000014372	ENSJJAG00000011224	Smad7 (ENSJJAG00000017342)	Ctif (ENSJJAG00000013706)	ENSJJAG00000000639	Zbtb7c (ENSJJAG00000005484)	ENSJJAG00000000783	Smad2 (ENSJJAG00000021902)	Skor2 (ENSJJAG00000013235)	ENSJJAG00000009768
Kangaroo rat	MODERN SPECIES	362	Poli (ENSDORG00000015768)	Mbd2 (ENSDORG00000029792)	Dcc (ENSDORG00000001861)	Mex3c (ENSDORG00000025473)	Smad4 (ENSDORG00000009089)	Elac1 (ENSDORG00000025215)	ENSDORG00000024602	Me2 (ENSDORG00000010848)	Mro (ENSDORG00000004230)	ENSDORG00000028529	ENSDORG00000013704	Cxxc1 (ENSDORG00000000890)	Mbd1 (ENSDORG00000013917)	ENSDORG00000013915	Myo5b (ENSDORG00000013047)	Acaa2 (ENSDORG00000012365) ##22	Lipg (ENSDORG00000015147)	ENSDORG00000026216	BC031181 (ENSDORG00000000327)	Dym (ENSDORG00000029874)	Smad7 (ENSDORG00000001837)	Ctif (ENSDORG00000003221)	Zbtb7c (ENSDORG00000002188)	Smad2 (ENSDORG00000013015)	Skor2 (ENSDORG00000012420)	ENSDORG00000027748	Hdhd2 (ENSDORG00000012417)	Katnal2 (ENSDORG00000005500)
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Guinea pig	MODERN SPECIES	14	STARD6 (ENSCPOG00000040582)	POLI (ENSCPOG00000037626)	MBD2 (ENSCPOG00000006832)	DCC (ENSCPOG00000002018)	MEX3C (ENSCPOG00000009646)	SMAD4 (ENSCPOG00000006470)	ELAC1 (ENSCPOG00000012588)	ME2 (ENSCPOG00000012583)	MRO (ENSCPOG00000005618)	MAPK4 (ENSCPOG00000010565)	SKA1 (ENSCPOG00000013281)	CXXC1 (ENSCPOG00000020250)	MBD1 (ENSCPOG00000001671)	CFAP53 (ENSCPOG00000001668)	MYO5B (ENSCPOG00000014213)	ACAA2 (ENSCPOG00000004734) ##22	LIPG (ENSCPOG00000008890)	ENSCPOG00000019337	C18orf32 (ENSCPOG00000034745)	DYM (ENSCPOG00000013484)	SMAD7 (ENSCPOG00000030295)	CTIF (ENSCPOG00000001049)	ZBTB7C (ENSCPOG00000040464)	SMAD2 (ENSCPOG00000013398)	SKOR2 (ENSCPOG00000021920)	IER3IP1 (ENSCPOG00000040200)	HDHD2 (ENSCPOG00000030325)	KATNAL2 (ENSCPOG00000008150)	ENSCPOG00000003067	ST8SIA5 (ENSCPOG00000030161)	LOXHD1 (ENSCPOG00000009824)
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Degu	DUPLICATION
Degu	MODERN SPECIES	44	ENSODEG00000018471	DCC (ENSODEG00000018488)	ENSODEG00000018425	MEX3C (ENSODEG00000018398)	SMAD4 (ENSODEG00000018472)	ELAC1 (ENSODEG00000018368)	ME2 (ENSODEG00000018322)	MRO (ENSODEG00000018415)	ENSODEG00000018450	ENSODEG00000018396	ENSODEG00000018389	CXXC1 (ENSODEG00000018469)	MBD1 (ENSODEG00000018451)	ENSODEG00000018463	MYO5B (ENSODEG00000018483)	ENSODEG00000018376 ##22	LIPG (ENSODEG00000018437)	ENSODEG00000018445	ENSODEG00000018444	ENSODEG00000018441	ENSODEG00000018384	C18orf32 (ENSODEG00000018385)	ENSODEG00000020491	ENSODEG00000018460	ENSODEG00000018365	ENSODEG00000018393	DYM (ENSODEG00000018486)	SMAD7 (ENSODEG00000018424)	CTIF (ENSODEG00000018390)	ZBTB7C (ENSODEG00000018417)	SMAD2 (ENSODEG00000018373)
Degu	MODERN SPECIES	95																ENSODEG00000005586 ##22	NSMAF (ENSODEG00000005681)	ENSODEG00000005975	CYP7A1 (ENSODEG00000006021)	UBXN2B (ENSODEG00000006103)	BPNT2 (ENSODEG00000006152)	PENK (ENSODEG00000002736)	ENSODEG00000002751	SDR16C5 (ENSODEG00000002794)	ENSODEG00000002863	PLAG1 (ENSODEG00000002880)	LYN (ENSODEG00000002925)	ENSODEG00000018874	TGS1 (ENSODEG00000002948)	ENSODEG00000003120	XKR4 (ENSODEG00000003156)
Long-tailed chinchilla	MODERN SPECIES	109	ENSCLAG00000017775	DCC (ENSCLAG00000008360)	ENSCLAG00000007427	MEX3C (ENSCLAG00000006969)	SMAD4 (ENSCLAG00000009301)	ELAC1 (ENSCLAG00000008334)	ENSCLAG00000007635	MRO (ENSCLAG00000007658)	ENSCLAG00000007082	MAPK4 (ENSCLAG00000007282)	SKA1 (ENSCLAG00000009485)	CXXC1 (ENSCLAG00000010473)	MBD1 (ENSCLAG00000007457)	ENSCLAG00000008426	MYO5B (ENSCLAG00000013994)	ACAA2 (ENSCLAG00000008998) ##22	ENSCLAG00000008597	ENSCLAG00000007196	LIPG (ENSCLAG00000011863)	ENSCLAG00000010369	ENSCLAG00000008914	C18orf32 (ENSCLAG00000008711)	DYM (ENSCLAG00000008080)	SMAD7 (ENSCLAG00000007063)	CTIF (ENSCLAG00000008174)	ZBTB7C (ENSCLAG00000012082)	SMAD2 (ENSCLAG00000011258)	SKOR2 (ENSCLAG00000012544)	IER3IP1 (ENSCLAG00000007652)	HDHD2 (ENSCLAG00000006391)	KATNAL2 (ENSCLAG00000013657)
Naked mole-rat female	MODERN SPECIES	9	ENSHGLG00000015531	MRO (ENSHGLG00000014593)	ENSHGLG00000008828	ELAC1 (ENSHGLG00000033818)	SMAD4 (ENSHGLG00000005758)	ENSHGLG00000045506	MEX3C (ENSHGLG00000004567)	DCC (ENSHGLG00000005265)	ENSHGLG00000033712	MBD2 (ENSHGLG00000039782)	ENSHGLG00000008868	ENSHGLG00000004780	ENSHGLG00000045151	ENSHGLG00000048044	ENSHGLG00000037393	ENSHGLG00000008021 ##22	ENSHGLG00000038847	ENSHGLG00000006292	LIPG (ENSHGLG00000010224)	ENSHGLG00000047452	ENSHGLG00000036153	ENSHGLG00000009081	ENSHGLG00000015030	ENSHGLG00000040505	ENSHGLG00000048272	ENSHGLG00000042101	ENSHGLG00000031912	SMAD2 (ENSHGLG00000008711)	SKOR2 (ENSHGLG00000035792)	ENSHGLG00000048898	HDHD2 (ENSHGLG00000010130)
Sciuridae	ANCESTRAL SPECIES	31	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Marmotini	ANCESTRAL SPECIES	31	ENSGT00940000161788.c	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT01030000236530	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Alpin marmot	MODERN SPECIES	10	POLI (ENSMMMG00000005242)	MBD2 (ENSMMMG00000005285)	ENSMMMG00000005475	DCC (ENSMMMG00000005526)	MEX3C (ENSMMMG00000005613)	SMAD4 (ENSMMMG00000005628)	ELAC1 (ENSMMMG00000005660)	ME2 (ENSMMMG00000005680)	MRO (ENSMMMG00000005705)	MAPK4 (ENSMMMG00000005718)	SKA1 (ENSMMMG00000005747)	CXXC1 (ENSMMMG00000005766)	MBD1 (ENSMMMG00000005802)	CFAP53 (ENSMMMG00000005890)	MYO5B (ENSMMMG00000005915)	ACAA2 (ENSMMMG00000006091) ##22	LIPG (ENSMMMG00000006111)	ENSMMMG00000006135	C18orf32 (ENSMMMG00000006157)	DYM (ENSMMMG00000006170)	SMAD7 (ENSMMMG00000006202)	CTIF (ENSMMMG00000006232)	ZBTB7C (ENSMMMG00000006278)	SMAD2 (ENSMMMG00000006290)	ENSMMMG00000006338	HDHD2 (ENSMMMG00000006342)	KATNAL2 (ENSMMMG00000006351)	PIAS2 (ENSMMMG00000006515)	ST8SIA5 (ENSMMMG00000006633)	LOXHD1 (ENSMMMG00000006669)	RNF165 (ENSMMMG00000006757)
Marmotini_b	ANCESTRAL SPECIES	80	ENSGT00940000161788.c	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a
Arctic ground squirrel	MODERN SPECIES	126				MEX3C (ENSUPAG00010015295)	SMAD4 (ENSUPAG00010015300)	ELAC1 (ENSUPAG00010015318)	ME2 (ENSUPAG00010015322)	MRO (ENSUPAG00010015355)	ENSUPAG00010015363	MAPK4 (ENSUPAG00010015372)	SKA1 (ENSUPAG00010015379)	CXXC1 (ENSUPAG00010015403)	MBD1 (ENSUPAG00010015449)	CFAP53 (ENSUPAG00010015532)	MYO5B (ENSUPAG00010015539)	ACAA2 (ENSUPAG00010015705) ##22	LIPG (ENSUPAG00010015731)	ENSUPAG00010015756	C18orf32 (ENSUPAG00010015774)	DYM (ENSUPAG00010015792)	ENSUPAG00010015826	SMAD7 (ENSUPAG00010015842)	CTIF (ENSUPAG00010015848)	ZBTB7C (ENSUPAG00010015885)	SMAD2 (ENSUPAG00010015902)
Squirrel	MODERN SPECIES	97	STARD6 (ENSSTOG00000004409)	POLI (ENSSTOG00000004392)	MBD2 (ENSSTOG00000011253)	DCC (ENSSTOG00000003557)	MEX3C (ENSSTOG00000022325)	SMAD4 (ENSSTOG00000028580)	ELAC1 (ENSSTOG00000010591)	ME2 (ENSSTOG00000027218)	MRO (ENSSTOG00000009940)	MAPK4 (ENSSTOG00000022822)	SKA1 (ENSSTOG00000003367)	CXXC1 (ENSSTOG00000029092)	MBD1 (ENSSTOG00000007780)	CFAP53 (ENSSTOG00000007769)	MYO5B (ENSSTOG00000019663)	ACAA2 (ENSSTOG00000020792) ##22	LIPG (ENSSTOG00000016012)	ENSSTOG00000005193	C18orf32 (ENSSTOG00000024071)	DYM (ENSSTOG00000021838)	SMAD7 (ENSSTOG00000020985)	CTIF (ENSSTOG00000001967)	ZBTB7C (ENSSTOG00000011681)	ENSSTOG00000030530	SMAD2 (ENSSTOG00000003788)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	14	PTPRR (ENSSVLG00005020729)	KCNMB4 (ENSSVLG00005017550)	CNOT2 (ENSSVLG00005017415)	MYRFL (ENSSVLG00005016658)	RAB3IP (ENSSVLG00005016537)	BEST3 (ENSSVLG00005016331)	LRRC10 (ENSSVLG00005016313)	CCT2 (ENSSVLG00005016241)	FRS2 (ENSSVLG00005016214)	ENSSVLG00005016198	YEATS4 (ENSSVLG00005016130)	ENSSVLG00005016075	ENSSVLG00005015994	ENSSVLG00005015935	CPSF6 (ENSSVLG00005015843)	ENSSVLG00005015790 ##22	ENSSVLG00005015766	CPM (ENSSVLG00005015669)	ENSSVLG00005015364	SLC35E3 (ENSSVLG00005015217)	ENSSVLG00005015165	NUP107 (ENSSVLG00005014845)	ENSSVLG00005014489	MDM1 (ENSSVLG00005014085)	IL22 (ENSSVLG00005013922)	IL26 (ENSSVLG00005013845)	IFNG (ENSSVLG00005013763)	DYRK2 (ENSSVLG00005013718)	CAND1 (ENSSVLG00005013596)	ENSSVLG00005013442	GRIP1 (ENSSVLG00005013349)
Eurasian red squirrel	MODERN SPECIES	4	POLI (ENSSVLG00005024347)	MBD2 (ENSSVLG00005024263)	ENSSVLG00005024226	DCC (ENSSVLG00005023748)	ENSSVLG00005023623	SMAD4 (ENSSVLG00005023577)	ELAC1 (ENSSVLG00005023532)	ENSSVLG00005022892	MRO (ENSSVLG00005022669)	MAPK4 (ENSSVLG00005022625)	SKA1 (ENSSVLG00005022508)	CXXC1 (ENSSVLG00005021998)	ENSSVLG00005021347	CFAP53 (ENSSVLG00005021141)	MYO5B (ENSSVLG00005020740)	ACAA2 (ENSSVLG00005020577) ##22	LIPG (ENSSVLG00005020493)	ENSSVLG00005020364	ENSSVLG00005020326	DYM (ENSSVLG00005019977)	SMAD7 (ENSSVLG00005019787)	CTIF (ENSSVLG00005019619)	ZBTB7C (ENSSVLG00005019433)	ENSSVLG00005019379	SKOR2 (ENSSVLG00005019180)	ENSSVLG00005019150	HDHD2 (ENSSVLG00005019073)	ENSSVLG00005019019	KATNAL2 (ENSSVLG00005018737)	ENSSVLG00005018588	ST8SIA5 (ENSSVLG00005018346)
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Hedgehog	MODERN SPECIES	6209																ACAA2 (ENSEEUG00000012194) ##22
Common shrew	MODERN SPECIES	4835																ACAA2 (ENSSARG00000003438) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Suina	ANCESTRAL SPECIES	12	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Pig	MODERN SPECIES		MEX3C (ENSSSCG00000034427)	SMAD4 (ENSSSCG00000004524)	ELAC1 (ENSSSCG00000024479)	ME2 (ENSSSCG00000004522)	MRO (ENSSSCG00000004521)	ENSSSCG00000004520	SKA1 (ENSSSCG00000004518)	CXXC1 (ENSSSCG00000004517)	MBD1 (ENSSSCG00000004516)	CFAP53 (ENSSSCG00000055973)	ENSSSCG00000041158	ENSSSCG00000061513	ENSSSCG00000045942	ENSSSCG00000049462	MYO5B (ENSSSCG00000004511)	ACAA2 (ENSSSCG00000004510) ##22	LIPG (ENSSSCG00000004509)	ENSSSCG00000035007	C18orf32 (ENSSSCG00000034415)	DYM (ENSSSCG00000004508)	SMAD7 (ENSSSCG00000004507)	CTIF (ENSSSCG00000004506)	ZBTB7C (ENSSSCG00000028076)	SMAD2 (ENSSSCG00000004505)	SKOR2 (ENSSSCG00000005767)	ENSSSCG00000039669	IER3IP1 (ENSSSCG00000060420)	HDHD2 (ENSSSCG00000005771)	KATNAL2 (ENSSSCG00000022643)	PIAS2 (ENSSSCG00000034730)	ST8SIA5 (ENSSSCG00000032053)
Chacoan peccary	MODERN SPECIES	123																ACAA2 (ENSCWAG00000018572) ##22	ENSCWAG00000018602	LIPG (ENSCWAG00000018628)	ENSCWAG00000018703	C18orf32 (ENSCWAG00000007861)	DYM (ENSCWAG00000007926)	ENSCWAG00000008076	ENSCWAG00000008125	SMAD7 (ENSCWAG00000008146)	CTIF (ENSCWAG00000008248)	ZBTB7C (ENSCWAG00000008442)	ENSCWAG00000008490
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Camelidae	ANCESTRAL SPECIES	53	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01030000234539.a.a.b.b	ENSGT00390000018830	ENSGT00940000156997
Arabian camel	MODERN SPECIES	23	STARD6 (ENSCDRG00005021679)	POLI (ENSCDRG00005021682)	MBD2 (ENSCDRG00005021689)	DCC (ENSCDRG00005021692)	MEX3C (ENSCDRG00005008924)	SMAD4 (ENSCDRG00005009019)	ELAC1 (ENSCDRG00005009129)	ME2 (ENSCDRG00005009190)	MRO (ENSCDRG00005009438)	MAPK4 (ENSCDRG00005009618)	SKA1 (ENSCDRG00005009696)	CXXC1 (ENSCDRG00005009892)	MBD1 (ENSCDRG00005010072)	CFAP53 (ENSCDRG00005010332)	MYO5B (ENSCDRG00005010461)	ACAA2 (ENSCDRG00005010799) ##22	ENSCDRG00005010930	LIPG (ENSCDRG00005010970)	RPL17 (ENSCDRG00005011453)	C18orf32 (ENSCDRG00005011639)	DYM (ENSCDRG00005011719)	ENSCDRG00005012031	ENSCDRG00005012050	CTIF (ENSCDRG00005012119)	ZBTB7C (ENSCDRG00005012395)	SMAD2 (ENSCDRG00005012465)	IER3IP1 (ENSCDRG00005012846)	HDHD2 (ENSCDRG00005012918)	KATNAL2 (ENSCDRG00005012992)	ENSCDRG00005013155	PIAS2 (ENSCDRG00005013189)
Alpaca	MODERN SPECIES	1753																ACAA2 (ENSVPAG00000012121) ##22
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Cetacea	ANCESTRAL SPECIES	11	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000166688.b	ENSGT00960000190376.b	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000166688.b	ENSGT00960000190376.b	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000166688.b	ENSGT00960000190376.b	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT00390000002428.a.g.b	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000166688.b	ENSGT00960000190376.b	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01000000220806	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000166688.b	ENSGT00960000190376.b	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654.j	ENSGT00990000210587	ENSGT00390000011654.i	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000169764	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741.k	ENSGT00390000008772	ENSGT00940000159872	ENSGT00390000008808.k.a.a	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01000000220806
Narwhal	MODERN SPECIES	295	C18orf54 (ENSMMNG00015007290)	STARD6 (ENSMMNG00015007313)	POLI (ENSMMNG00015007331)	MBD2 (ENSMMNG00015007380)	ENSMMNG00015000016	DCC (ENSMMNG00015000224)	ENSMMNG00015000421	ENSMMNG00015000436	MEX3C (ENSMMNG00015000471)	SMAD4 (ENSMMNG00015000527)	ELAC1 (ENSMMNG00015000560)	ME2 (ENSMMNG00015000602)	MRO (ENSMMNG00015000680)	ENSMMNG00015000706	ENSMMNG00015000736	ACAA2 (ENSMMNG00015000776) ##22	ENSMMNG00015000802	LIPG (ENSMMNG00015000826)	ENSMMNG00015000862	ENSMMNG00015000947	DYM (ENSMMNG00015001014)	ENSMMNG00015001110	SMAD7 (ENSMMNG00015001136)	ENSMMNG00015001156	CTIF (ENSMMNG00015001193)	ZBTB7C (ENSMMNG00015001274)	SMAD2 (ENSMMNG00015001331)	SKOR2 (ENSMMNG00015001428)	ENSMMNG00015001451	HDHD2 (ENSMMNG00015001468)	KATNAL2 (ENSMMNG00015001513)
Beluga whale	MODERN SPECIES	25	MBD2 (ENSDLEG00000004210)	DCC (ENSDLEG00000004245)	ENSDLEG00000004386	MEX3C (ENSDLEG00000004392)	SMAD4 (ENSDLEG00000004395)	ELAC1 (ENSDLEG00000004401)	ME2 (ENSDLEG00000004409)	MRO (ENSDLEG00000004425)	MAPK4 (ENSDLEG00000004428)	ENSDLEG00000004434	ENSDLEG00000004437	CXXC1 (ENSDLEG00000004445)	MBD1 (ENSDLEG00000004462)	CFAP53 (ENSDLEG00000004488)	MYO5B (ENSDLEG00000004517)	ACAA2 (ENSDLEG00000004552) ##22	ENSDLEG00000004561	LIPG (ENSDLEG00000004571)	ENSDLEG00000004581	CUNH18orf32 (ENSDLEG00000004598)	DYM (ENSDLEG00000004613)	SMAD7 (ENSDLEG00000004642)	ENSDLEG00000004646	CTIF (ENSDLEG00000004651)	ZBTB7C (ENSDLEG00000006486)	SMAD2 (ENSDLEG00000006490)
Vaquita	MODERN SPECIES	5	ENSPSNG00000007925	ENSPSNG00000007942	ENSPSNG00000007972	MEX3C (ENSPSNG00000007985)	SMAD4 (ENSPSNG00000008007)	ELAC1 (ENSPSNG00000008066)	ME2 (ENSPSNG00000008129)	MRO (ENSPSNG00000008257)	ENSPSNG00000008320	SKA1 (ENSPSNG00000008361)	CXXC1 (ENSPSNG00000008435)	MBD1 (ENSPSNG00000008606)	CFAP53 (ENSPSNG00000008868)	MYO5B (ENSPSNG00000008965)	ENSPSNG00000009066	ACAA2 (ENSPSNG00000009112) ##22	LIPG (ENSPSNG00000009216)	ENSPSNG00000009327	ENSPSNG00000009445	DYM (ENSPSNG00000009515)	ENSPSNG00000009632	ENSPSNG00000009707	CTIF (ENSPSNG00000009732)	ZBTB7C (ENSPSNG00000009825)	SMAD2 (ENSPSNG00000009901)	SKOR2 (ENSPSNG00000010229)	IER3IP1 (ENSPSNG00000010315)	HDHD2 (ENSPSNG00000010382)	KATNAL2 (ENSPSNG00000010440)	ENSPSNG00000010683	PIAS2 (ENSPSNG00000010743)
Dolphin	MODERN SPECIES	1683															MYO5B (ENSTTRG00000009961)	ACAA2 (ENSTTRG00000009947) ##22
Sperm whale	MODERN SPECIES	10	ENSPCTG00005013989	ENSPCTG00005013928	ENSPCTG00005013881	MEX3C (ENSPCTG00005013828)	SMAD4 (ENSPCTG00005013716)	ELAC1 (ENSPCTG00005013645)	ME2 (ENSPCTG00005013372)	MRO (ENSPCTG00005013153)	ENSPCTG00005013095	SKA1 (ENSPCTG00005012981)	CXXC1 (ENSPCTG00005012649)	MBD1 (ENSPCTG00005012098)	CFAP53 (ENSPCTG00005012030)	ENSPCTG00005010783	ENSPCTG00005010644	ACAA2 (ENSPCTG00005010500) ##22	LIPG (ENSPCTG00005010413)	ENSPCTG00005010250	ENSPCTG00005010201	DYM (ENSPCTG00005009929)	CTIF (ENSPCTG00005009802)	ZBTB7C (ENSPCTG00005009728)	SMAD2 (ENSPCTG00005009494)	SKOR2 (ENSPCTG00005009374)	IER3IP1 (ENSPCTG00005009339)	HDHD2 (ENSPCTG00005009305)	KATNAL2 (ENSPCTG00005009038)	ENSPCTG00005008984	PIAS2 (ENSPCTG00005008808)	ENSPCTG00005008636	ST8SIA5 (ENSPCTG00005008579)
Blue whale	MODERN SPECIES	5	ENSBMSG00010010006	DCC (ENSBMSG00010009938)	ENSBMSG00010009902	MEX3C (ENSBMSG00010009893)	SMAD4 (ENSBMSG00010009874)	ELAC1 (ENSBMSG00010009858)	ME2 (ENSBMSG00010009846)	MRO (ENSBMSG00010009824)	ENSBMSG00010009805	ENSBMSG00010009796	SKA1 (ENSBMSG00010009775)	CXXC1 (ENSBMSG00010009732)	MBD1 (ENSBMSG00010009608)	CFAP53 (ENSBMSG00010009568)	MYO5B (ENSBMSG00010009537)	ACAA2 (ENSBMSG00010021576) ##22	LIPG (ENSBMSG00010021562)	ENSBMSG00010021535	C18orf32 (ENSBMSG00010021530)	DYM (ENSBMSG00010021517)	SMAD7 (ENSBMSG00010021494)	CTIF (ENSBMSG00010021461)	ZBTB7C (ENSBMSG00010021442)	SMAD2 (ENSBMSG00010021413)	SKOR2 (ENSBMSG00010021387)	ENSBMSG00010021377	IER3IP1 (ENSBMSG00010021374)	HDHD2 (ENSBMSG00010021363)	ENSBMSG00010021354	KATNAL2 (ENSBMSG00010021337)	ENSBMSG00010021325
Pecora	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Yarkand deer	MODERN SPECIES	19	ENSCHYG00000025951	ENSCHYG00000025960	ENSCHYG00000025969	ENSCHYG00000025984	ENSCHYG00000025987	MEX3C (ENSCHYG00000025999)	SMAD4 (ENSCHYG00000026027)	ELAC1 (ENSCHYG00000026085)	ME2 (ENSCHYG00000026116)	MRO (ENSCHYG00000026169)	MAPK4 (ENSCHYG00000026191)	SKA1 (ENSCHYG00000026215)	CXXC1 (ENSCHYG00000026245)	ENSCHYG00000026350	MYO5B (ENSCHYG00000026574)	ACAA2 (ENSCHYG00000026661) ##22	LIPG (ENSCHYG00000026718)	ENSCHYG00000026734	C18orf32 (ENSCHYG00000026758)	DYM (ENSCHYG00000026793)	SMAD7 (ENSCHYG00000026860)	CTIF (ENSCHYG00000026870)	ENSCHYG00000026884	ZBTB7C (ENSCHYG00000009960)	ENSCHYG00000010021	SMAD2 (ENSCHYG00000010054)	ENSCHYG00000010193	ENSCHYG00000010350	HDHD2 (ENSCHYG00000010250)	KATNAL2 (ENSCHYG00000010401)	PIAS2 (ENSCHYG00000010761)
Percora_a	ANCESTRAL SPECIES	28	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Siberian musk deer	MODERN SPECIES	132				MEX3C (ENSMMSG00000004775)	SMAD4 (ENSMMSG00000005591)	ELAC1 (ENSMMSG00000005643)	ME2 (ENSMMSG00000005689)	MRO (ENSMMSG00000005884)	ENSMMSG00000005937	SKA1 (ENSMMSG00000005964)	CXXC1 (ENSMMSG00000006036)	MBD1 (ENSMMSG00000006100)	CFAP53 (ENSMMSG00000006206)	MYO5B (ENSMMSG00000006238)	ENSMMSG00000006303	ACAA2 (ENSMMSG00000006348) ##22	LIPG (ENSMMSG00000006397)	ENSMMSG00000006453	C18orf32 (ENSMMSG00000006526)	DYM (ENSMMSG00000006548)	SMAD7 (ENSMMSG00000006627)	CTIF (ENSMMSG00000006694)	ZBTB7C (ENSMMSG00000006737)	ENSMMSG00000006765	SKOR2 (ENSMMSG00000006829)	IER3IP1 (ENSMMSG00000006915)	HDHD2 (ENSMMSG00000006946)	KATNAL2 (ENSMMSG00000006988)	ENSMMSG00000007106	PIAS2 (ENSMMSG00000007137)	ST8SIA5 (ENSMMSG00000007341)
Bovidae	ANCESTRAL SPECIES	28	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Caprinae	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642.b	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b.m	ENSGT01030000234535.C
Rambouillet Sheep	MODERN SPECIES	15	STARD6 (ENSOARG00020017708)	POLI (ENSOARG00020017236)	MBD2 (ENSOARG00020016893)	ENSOARG00020016832	DCC (ENSOARG00020016246)	ENSOARG00020016162	MEX3C (ENSOARG00020016147)	SMAD4 (ENSOARG00020016034)	ELAC1 (ENSOARG00020015975)	ME2 (ENSOARG00020015563)	MRO (ENSOARG00020015446)	MAPK4 (ENSOARG00020015369)	SKA1 (ENSOARG00020015277)	ENSOARG00020013652	MYO5B (ENSOARG00020012171)	ACAA2 (ENSOARG00020011796) ##22	LIPG (ENSOARG00020011622)	RPL17 (ENSOARG00020011339)	C18orf32 (ENSOARG00020011289)	ENSOARG00020011257	DYM (ENSOARG00020011069)	SMAD7 (ENSOARG00020010974)	CTIF (ENSOARG00020010822)	ZBTB7C (ENSOARG00020010706)	SMAD2 (ENSOARG00020010458)	SKOR2 (ENSOARG00020010308)	IER3IP1 (ENSOARG00020010237)	HDHD2 (ENSOARG00020010165)	ENSOARG00020010055	KATNAL2 (ENSOARG00020009912)	PIAS2 (ENSOARG00020009642)
Goat	MODERN SPECIES	16	POLI (ENSCHIG00000020002)	MBD2 (ENSCHIG00000011602)	ENSCHIG00000019871	DCC (ENSCHIG00000025162)	MEX3C (ENSCHIG00000017962)	SMAD4 (ENSCHIG00000019181)	ELAC1 (ENSCHIG00000014278)	ME2 (ENSCHIG00000001144)	ENSCHIG00000016460	MAPK4 (ENSCHIG00000013396)	SKA1 (ENSCHIG00000014694)	CXXC1 (ENSCHIG00000014305)	MBD1 (ENSCHIG00000021134)	CFAP53 (ENSCHIG00000001175)	MYO5B (ENSCHIG00000016585)	ACAA2 (ENSCHIG00000024466) ##22	ENSCHIG00000003894	LIPG (ENSCHIG00000015994)	ENSCHIG00000011677	C18orf32 (ENSCHIG00000021354)	ENSCHIG00000004940	DYM (ENSCHIG00000001838)	SMAD7 (ENSCHIG00000019461)	CTIF (ENSCHIG00000014455)	ZBTB7C (ENSCHIG00000001635)	SMAD2 (ENSCHIG00000020206)	SKOR2 (ENSCHIG00000011642)	IER3IP1 (ENSCHIG00000020552)	HDHD2 (ENSCHIG00000015973)	KATNAL2 (ENSCHIG00000021217)	ENSCHIG00000014561
Bovinae	ANCESTRAL SPECIES	28	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00960000190719	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
American bison	MODERN SPECIES	3203	ENSBBBG00000024370	ENSBBBG00000024353	MEX3C (ENSBBBG00000024341)	ENSBBBG00000008185	SMAD4 (ENSBBBG00000006334)	ELAC1 (ENSBBBG00000006313)	ME2 (ENSBBBG00000008872)	MRO (ENSBBBG00000006228)	ENSBBBG00000023864	SKA1 (ENSBBBG00000023845)	CXXC1 (ENSBBBG00000023808)	MBD1 (ENSBBBG00000023724)	CFAP53 (ENSBBBG00000006869)	ENSBBBG00000023085	ENSBBBG00000006043	ACAA2 (ENSBBBG00000006039) ##22	LIPG (ENSBBBG00000022975)	ENSBBBG00000022916	ENSBBBG00000022853
Bos	ANCESTRAL SPECIES	29	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00960000190719	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b
Bos_a	ANCESTRAL SPECIES	28	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00970000193421.C.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741.j	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Domestic yak	MODERN SPECIES	13	POLI (ENSBGRG00000025249)	MBD2 (ENSBGRG00000025200)	DCC (ENSBGRG00000024683)	ENSBGRG00000024631	MEX3C (ENSBGRG00000024594)	SMAD4 (ENSBGRG00000024537)	ELAC1 (ENSBGRG00000024517)	ME2 (ENSBGRG00000024333)	MRO (ENSBGRG00000024247)	MAPK4 (ENSBGRG00000024208)	SKA1 (ENSBGRG00000024086)	CXXC1 (ENSBGRG00000023942)	MBD1 (ENSBGRG00000023527)	ENSBGRG00000023396	ENSBGRG00000023371	ACAA2 (ENSBGRG00000023212) ##22	LIPG (ENSBGRG00000023098)	ENSBGRG00000022965	ENSBGRG00000022927	DYM (ENSBGRG00000022704)	SMAD7 (ENSBGRG00000022643)	ENSBGRG00000022591	CTIF (ENSBGRG00000022473)	ZBTB7C (ENSBGRG00000022372)	SMAD2 (ENSBGRG00000022238)	ENSBGRG00000022203	IER3IP1 (ENSBGRG00000022154)	HDHD2 (ENSBGRG00000022037)	KATNAL2 (ENSBGRG00000021942)	ENSBGRG00000021911	PIAS2 (ENSBGRG00000021507)
Wild yak	MODERN SPECIES	21															MYO5B (ENSBMUG00000013378)	ACAA2 (ENSBMUG00000013306) ##22	LIPG (ENSBMUG00000013263)	DYM (ENSBMUG00000013185)	SMAD7 (ENSBMUG00000013143)	CTIF (ENSBMUG00000013125)	ENSBMUG00000013104
Bos_b	ANCESTRAL SPECIES	34	ENSGT00940000159487	ENSGT00970000197079	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00960000190719	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.a	ENSGT00390000018741.i.b	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Hybrid Bos Indicus	MODERN SPECIES	16	ENSBIXG00005025041	MBD2 (ENSBIXG00005004276)	DCC (ENSBIXG00005004333)	ENSBIXG00005025532	ENSBIXG00005025566	MEX3C (ENSBIXG00005025578)	SMAD4 (ENSBIXG00005025648)	ELAC1 (ENSBIXG00005025678)	ME2 (ENSBIXG00005025823)	MRO (ENSBIXG00005025968)	MAPK4 (ENSBIXG00005025994)	SKA1 (ENSBIXG00005004443)	CXXC1 (ENSBIXG00005026115)	ENSBIXG00005026615	MYO5B (ENSBIXG00005026770)	ACAA2 (ENSBIXG00005026872) ##22	LIPG (ENSBIXG00005004622)	ENSBIXG00005007771	ENSBIXG00005027155	DYM (ENSBIXG00005027220)	SMAD7 (ENSBIXG00005004711)	CTIF (ENSBIXG00005007777)	ZBTB7C (ENSBIXG00005027504)	SMAD2 (ENSBIXG00005027591)	SKOR2 (ENSBIXG00005004756)	IER3IP1 (ENSBIXG00005027693)	ENSBIXG00005027700	HDHD2 (ENSBIXG00005027742)	KATNAL2 (ENSBIXG00005004778)	ENSBIXG00005006537	PIAS2 (ENSBIXG00005027955)
Cow	MODERN SPECIES	16	POLI (ENSBTAG00000009129)	ENSBTAG00000049603	MBD2 (ENSBTAG00000037457)	DCC (ENSBTAG00000048378)	ENSBTAG00000049503	MEX3C (ENSBTAG00000014886)	SMAD4 (ENSBTAG00000006919)	ELAC1 (ENSBTAG00000005683)	ME2 (ENSBTAG00000016269)	MRO (ENSBTAG00000047635)	MAPK4 (ENSBTAG00000009907)	SKA1 (ENSBTAG00000018216)	CXXC1 (ENSBTAG00000021884)	MBD1 (ENSBTAG00000003801)	MYO5B (ENSBTAG00000019455)	ACAA2 (ENSBTAG00000002863) ##22	LIPG (ENSBTAG00000048916)	RPL17 (ENSBTAG00000022902)	C24H18orf32 (ENSBTAG00000021334)	DYM (ENSBTAG00000000024)	SMAD7 (ENSBTAG00000012441)	CTIF (ENSBTAG00000018901)	ZBTB7C (ENSBTAG00000013306)	SMAD2 (ENSBTAG00000039916)	SKOR2 (ENSBTAG00000032962)	IER3IP1 (ENSBTAG00000032961)	HDHD2 (ENSBTAG00000011893)	KATNAL2 (ENSBTAG00000019331)	ENSBTAG00000047547	PIAS2 (ENSBTAG00000007833)	ST8SIA5 (ENSBTAG00000001770)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Ursidae	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Ursus	ANCESTRAL SPECIES	25	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.d	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830	ENSGT00940000156997
American black bear	MODERN SPECIES	150															MYO5B (ENSUAMG00000008662)	ACAA2 (ENSUAMG00000008676) ##22	LIPG (ENSUAMG00000008683)
Polar bear	MODERN SPECIES	96	STARD6 (ENSUMAG00000003451)	POLI (ENSUMAG00000003446)	MBD2 (ENSUMAG00000003257)	DCC (ENSUMAG00000003174)	ENSUMAG00000003148	MEX3C (ENSUMAG00000003137)	SMAD4 (ENSUMAG00000003120)	ELAC1 (ENSUMAG00000003132)	ME2 (ENSUMAG00000003096)	MRO (ENSUMAG00000003055)	MAPK4 (ENSUMAG00000003042)	SKA1 (ENSUMAG00000003034)	CXXC1 (ENSUMAG00000003014)	MBD1 (ENSUMAG00000002947)	MYO5B (ENSUMAG00000002812)	ACAA2 (ENSUMAG00000002792) ##22	LIPG (ENSUMAG00000002779)	ENSUMAG00000002766	C18orf32 (ENSUMAG00000002755)	DYM (ENSUMAG00000002750)	ENSUMAG00000002746	CTIF (ENSUMAG00000002735)	ZBTB7C (ENSUMAG00000002721)	SMAD2 (ENSUMAG00000002720)	IER3IP1 (ENSUMAG00000002717)	HDHD2 (ENSUMAG00000002716)	KATNAL2 (ENSUMAG00000002674)	PIAS2 (ENSUMAG00000002661)	ST8SIA5 (ENSUMAG00000002618)	LOXHD1 (ENSUMAG00000002413)	RNF165 (ENSUMAG00000002386)
Giant Panda	MODERN SPECIES	5	STARD6 (ENSAMEG00000017188)	POLI (ENSAMEG00000017194)	MBD2 (ENSAMEG00000017208)	DCC (ENSAMEG00000017215)	ENSAMEG00000002879	MEX3C (ENSAMEG00000002897)	SMAD4 (ENSAMEG00000002899)	ELAC1 (ENSAMEG00000002931)	ME2 (ENSAMEG00000002933)	MRO (ENSAMEG00000002971)	MAPK4 (ENSAMEG00000026715)	SKA1 (ENSAMEG00000000280)	CXXC1 (ENSAMEG00000000259)	MBD1 (ENSAMEG00000000238)	MYO5B (ENSAMEG00000009253)	ACAA2 (ENSAMEG00000009411) ##22	LIPG (ENSAMEG00000009434)	RPL17 (ENSAMEG00000009498)	ENSAMEG00000027976	DYM (ENSAMEG00000006724)	SMAD7 (ENSAMEG00000031009)	CTIF (ENSAMEG00000029852)	ZBTB7C (ENSAMEG00000012857)	SMAD2 (ENSAMEG00000012816)	ENSAMEG00000012815	IER3IP1 (ENSAMEG00000023574)	HDHD2 (ENSAMEG00000012799)	KATNAL2 (ENSAMEG00000012794)	PIAS2 (ENSAMEG00000012748)	LOXHD1 (ENSAMEG00000012676)	RNF165 (ENSAMEG00000012667)
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a.c.a	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Ferret	MODERN SPECIES	195															MYO5B (ENSMPUG00000000748)	ACAA2 (ENSMPUG00000000749) ##22	LIPG (ENSMPUG00000000750)	ENSMPUG00000000801	ENSMPUG00000000819	DYM (ENSMPUG00000000838)	SMAD7 (ENSMPUG00000000842)	CTIF (ENSMPUG00000000844)	ZBTB7C (ENSMPUG00000000848)	SMAD2 (ENSMPUG00000000850)	ENSMPUG00000000851	HDHD2 (ENSMPUG00000000855)	KATNAL2 (ENSMPUG00000000857)	PIAS2 (ENSMPUG00000000861)	ST8SIA5 (ENSMPUG00000000867)	LOXHD1 (ENSMPUG00000000881)	RNF165 (ENSMPUG00000000899)
American mink	MODERN SPECIES	1	POLI (ENSNVIG00000002960)	MBD2 (ENSNVIG00000002943)	DCC (ENSNVIG00000002859)	MEX3C (ENSNVIG00000002828)	SMAD4 (ENSNVIG00000002745)	RNZ1 (ENSNVIG00000002709)	ME2 (ENSNVIG00000002617)	MSTRO (ENSNVIG00000002520)	MAPK4 (ENSNVIG00000002506)	SKA1 (ENSNVIG00000002493)	CXXC1 (ENSNVIG00000002380)	MBD1 (ENSNVIG00000001896)	ENSNVIG00000001883	CFAP53 (ENSNVIG00000001864)	MYO5B (ENSNVIG00000001798)	ACAA2 (ENSNVIG00000001712) ##22	LIPG (ENSNVIG00000001676)	RPL17 (ENSNVIG00000001575)	CR032 (ENSNVIG00000001568)	DYM (ENSNVIG00000001500)	SMAD7 (ENSNVIG00000001490)	CTIF (ENSNVIG00000001442)	ZBTB7C (ENSNVIG00000001419)	SMAD2 (ENSNVIG00000001323)	SKOR2 (ENSNVIG00000001287)	IER3IP1 (ENSNVIG00000001270)	HDHD2 (ENSNVIG00000001251)	KATNAL2 (ENSNVIG00000001211)	PIAS2 (ENSNVIG00000001141)	B7Z1K9 (ENSNVIG00000001042)	LOXHD1 (ENSNVIG00000000795)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000159566	ENSGT00950000182810.A.a.b.c.b	ENSGT00950000182810.A.a.b.c.a	ENSGT00950000182810.A.a.b.d	ENSGT00390000003058.a	ENSGT00390000000781	ENSGT00390000018415	ENSGT00940000154686	ENSGT00940000153393.A	ENSGT00390000007046.b.a.b.db.a	ENSGT00510000048187	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01030000234570.d.b.a.a.a.b.a.b.a	ENSGT00940000159814	ENSGT00390000011654	ENSGT00940000159850
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000159977	ENSGT00940000159566	ENSGT00950000182810.A.a.b.c.b	ENSGT00950000182810.A.a.b.c.a	ENSGT00390000003058.a	ENSGT00390000000781	ENSGT00390000018415	ENSGT00940000154686	ENSGT00940000153393.A	ENSGT00390000007046.b.a.b.db.a	ENSGT00510000048187	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT01030000234570.d.b.a.a.a.b.a.b.a	ENSGT00940000159814	ENSGT00390000011654	ENSGT00940000159850
Dingo	MODERN SPECIES	271	ENSCAFG00020023975	ENSCAFG00020023976	ENSCAFG00020023978	SPIRE1 (ENSCAFG00020023989)	CEP76 (ENSCAFG00020024079)	PSMG2 (ENSCAFG00020024127)	PTPN2 (ENSCAFG00020024132)	ENSCAFG00020024140	SEH1L (ENSCAFG00020024143)	CEP192 (ENSCAFG00020024154)	ENSCAFG00020024265	CXXC1 (ENSCAFG00020024267)	MBD1 (ENSCAFG00020024272)	CFAP53 (ENSCAFG00020024273)	MYO5B (ENSCAFG00020024529)	ACAA2 (ENSCAFG00020026465) ##22	ENSCAFG00020026466	LIPG (ENSCAFG00020026468)	ENSCAFG00020026471	C18orf32 (ENSCAFG00020026474)	DYM (ENSCAFG00020026475)	SMAD7 (ENSCAFG00020026477)	CTIF (ENSCAFG00020026482)	ENSCAFG00020026484	ZBTB7C (ENSCAFG00020026486)	SKA1 (ENSCAFG00020026487)	MAPK4 (ENSCAFG00020026489)	ENSCAFG00020026493
Dog	MODERN SPECIES	35	CIDEA (ENSCAFG00845004999)	TUBB6 (ENSCAFG00845005010)	AFG3L2 (ENSCAFG00845005029)	ENSCAFG00845005053	PRELID3A (ENSCAFG00845005066)	SPIRE1 (ENSCAFG00845005132)	CEP76 (ENSCAFG00845005269)	PSMG2 (ENSCAFG00845005310)	PTPN2 (ENSCAFG00845005353)	SEH1L (ENSCAFG00845005406)	ENSCAFG00845005456	ENSCAFG00845005472	MBD1 (ENSCAFG00845005631)	CFAP53 (ENSCAFG00845015787)	MYO5B (ENSCAFG00845015859)	ACAA2 (ENSCAFG00845016064) ##22	ENSCAFG00845016172	LIPG (ENSCAFG00845016243)	RPL17 (ENSCAFG00845016396)	C7H18orf32 (ENSCAFG00845016548)	DYM (ENSCAFG00845016757)	SMAD7 (ENSCAFG00845017036)	CTIF (ENSCAFG00845017217)	ENSCAFG00845017540	ZBTB7C (ENSCAFG00845017703)	SKA1 (ENSCAFG00845017807)	MAPK4 (ENSCAFG00845017990)	ENSCAFG00845018103	ENSCAFG00845018122
Red fox	MODERN SPECIES	55	IMPA2 (ENSVVUG00000013499)	CIDEA (ENSVVUG00000013514)	TUBB6 (ENSVVUG00000013521)	AFG3L2 (ENSVVUG00000013554)	PRELID3A (ENSVVUG00000013561)	SPIRE1 (ENSVVUG00000013570)	CEP76 (ENSVVUG00000013591)	PSMG2 (ENSVVUG00000013601)	PTPN2 (ENSVVUG00000013607)	SEH1L (ENSVVUG00000013613)	CEP192 (ENSVVUG00000013660)	ENSVVUG00000014183	CXXC1 (ENSVVUG00000014195)	ENSVVUG00000014264	MYO5B (ENSVVUG00000014286)	ACAA2 (ENSVVUG00000014309) ##22	ENSVVUG00000014311	ENSVVUG00000014316	LIPG (ENSVVUG00000014320)	ENSVVUG00000014327	CUNH18orf32 (ENSVVUG00000014335)	DYM (ENSVVUG00000014342)	SMAD7 (ENSVVUG00000014344)	CTIF (ENSVVUG00000014347)	ENSVVUG00000014363	ZBTB7C (ENSVVUG00000014375)	ENSVVUG00000014382	MAPK4 (ENSVVUG00000014385)
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT01090000260040.a.a.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.a.a	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Panthera	ANCESTRAL SPECIES	24	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT01090000260040.a.a.a	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.a.b	ENSGT00390000018741.m	ENSGT00390000008772	ENSGT00940000153201.j.n	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
leopard	MODERN SPECIES	43	MBD2 (ENSPPRG00000001698)	DCC (ENSPPRG00000000462)	ENSPPRG00000015809	ENSPPRG00000013111	MEX3C (ENSPPRG00000012151)	SMAD4 (ENSPPRG00000010397)	ELAC1 (ENSPPRG00000009439)	ME2 (ENSPPRG00000008913)	MRO (ENSPPRG00000004466)	MAPK4 (ENSPPRG00000003118)	SKA1 (ENSPPRG00000002324)	CXXC1 (ENSPPRG00000001170)	MBD1 (ENSPPRG00000021387)	CFAP53 (ENSPPRG00000012971)	MYO5B (ENSPPRG00000012444)	ACAA2 (ENSPPRG00000009885) ##22	LIPG (ENSPPRG00000009382)	ENSPPRG00000006166	ENSPPRG00000004942	DYM (ENSPPRG00000004872)	ENSPPRG00000003458	SMAD7 (ENSPPRG00000002686)	CTIF (ENSPPRG00000002265)	ZBTB7C (ENSPPRG00000001432)	SMAD2 (ENSPPRG00000000616)	ENSPPRG00000000048	IER3IP1 (ENSPPRG00000022716)	HDHD2 (ENSPPRG00000022964)	KATNAL2 (ENSPPRG00000023079)	PIAS2 (ENSPPRG00000023399)	ST8SIA5 (ENSPPRG00000018954)
lion	MODERN SPECIES	12	MBD2 (ENSPLOG00000011506)	DCC (ENSPLOG00000011680)	ENSPLOG00000012308	ENSPLOG00000012345	MEX3C (ENSPLOG00000012379)	SMAD4 (ENSPLOG00000012428)	ELAC1 (ENSPLOG00000012525)	ME2 (ENSPLOG00000012643)	MRO (ENSPLOG00000012819)	ENSPLOG00000012947	SKA1 (ENSPLOG00000013016)	CXXC1 (ENSPLOG00000013121)	MBD1 (ENSPLOG00000013232)	CFAP53 (ENSPLOG00000013386)	MYO5B (ENSPLOG00000013501)	ACAA2 (ENSPLOG00000013846) ##22	LIPG (ENSPLOG00000014024)	ENSPLOG00000014279	ENSPLOG00000014438	DYM (ENSPLOG00000014488)	ENSPLOG00000014599	SMAD7 (ENSPLOG00000014649)	CTIF (ENSPLOG00000014765)	ZBTB7C (ENSPLOG00000014833)	SMAD2 (ENSPLOG00000014910)	SKOR2 (ENSPLOG00000015171)	IER3IP1 (ENSPLOG00000015259)	HDHD2 (ENSPLOG00000015310)	KATNAL2 (ENSPLOG00000015369)	PIAS2 (ENSPLOG00000015647)	ST8SIA5 (ENSPLOG00000015755)
Tiger	MODERN SPECIES	143	POLI (ENSPTIG00000009520)	MBD2 (ENSPTIG00000011491)	DCC (ENSPTIG00000013104)	ENSPTIG00000021315	MEX3C (ENSPTIG00000004865)	SMAD4 (ENSPTIG00000005616)	ELAC1 (ENSPTIG00000006619)	ME2 (ENSPTIG00000007762)	MRO (ENSPTIG00000013632)	ENSPTIG00000015504	SKA1 (ENSPTIG00000015731)	CXXC1 (ENSPTIG00000017258)	MBD1 (ENSPTIG00000021231)	CFAP53 (ENSPTIG00000018895)	MYO5B (ENSPTIG00000019987)	ACAA2 (ENSPTIG00000021827) ##22	LIPG (ENSPTIG00000000449)	ENSPTIG00000007691	C18orf32 (ENSPTIG00000009698)	DYM (ENSPTIG00000011072)	ENSPTIG00000012715	ENSPTIG00000013182	CTIF (ENSPTIG00000013761)	ENSPTIG00000014786	SMAD2 (ENSPTIG00000015931)	ENSPTIG00000019038	IER3IP1 (ENSPTIG00000019219)	HDHD2 (ENSPTIG00000019534)	KATNAL2 (ENSPTIG00000019828)	PIAS2 (ENSPTIG00000020076)	ST8SIA5 (ENSPTIG00000021493)
Cat	MODERN SPECIES	145																ACAA2 (ENSFCAG00000043725) ##22
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Equus	ANCESTRAL SPECIES	36	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Horse	MODERN SPECIES	29	POLI (ENSECAG00000004436)	MBD2 (ENSECAG00000022368)	DCC (ENSECAG00000021760)	ENSECAG00000055237	MEX3C (ENSECAG00000021727)	SMAD4 (ENSECAG00000017857)	ELAC1 (ENSECAG00000016230)	ME2 (ENSECAG00000005517)	MRO (ENSECAG00000002610)	MAPK4 (ENSECAG00000023749)	SKA1 (ENSECAG00000023484)	CXXC1 (ENSECAG00000017698)	MBD1 (ENSECAG00000011497)	CFAP53 (ENSECAG00000053670)	MYO5B (ENSECAG00000022515)	ACAA2 (ENSECAG00000019394) ##22	ENSECAG00000059774	LIPG (ENSECAG00000015140)	ENSECAG00000011547	C18orf32 (ENSECAG00000046374)	DYM (ENSECAG00000001651)	SMAD7 (ENSECAG00000020583)	CTIF (ENSECAG00000020473)	ZBTB7C (ENSECAG00000020456)	SMAD2 (ENSECAG00000015132)	SKOR2 (ENSECAG00000040113)	IER3IP1 (ENSECAG00000026829)	HDHD2 (ENSECAG00000012664)	ENSECAG00000010000	KATNAL2 (ENSECAG00000010207)	PIAS2 (ENSECAG00000002816)
Donkey	MODERN SPECIES	27	C18orf54 (ENSEASG00005003480)	STARD6 (ENSEASG00005033368)	POLI (ENSEASG00005003488)	ENSEASG00005003504	DCC (ENSEASG00005003571)	MEX3C (ENSEASG00005032865)	SMAD4 (ENSEASG00005003805)	ELAC1 (ENSEASG00005003810)	ME2 (ENSEASG00005003813)	MRO (ENSEASG00005003818)	MAPK4 (ENSEASG00005003821)	SKA1 (ENSEASG00005033486)	CXXC1 (ENSEASG00005003826)	ENSEASG00005003857	MYO5B (ENSEASG00005004025)	ACAA2 (ENSEASG00005005395) ##22	LIPG (ENSEASG00005005399)	ENSEASG00005025626	ENSEASG00005031152	DYM (ENSEASG00005015845)	SMAD7 (ENSEASG00005016092)	CTIF (ENSEASG00005016094)	ZBTB7C (ENSEASG00005016097)	SMAD2 (ENSEASG00005016099)	SKOR2 (ENSEASG00005016101)	IER3IP1 (ENSEASG00005037358)	HDHD2 (ENSEASG00005016104)	ENSEASG00005028481	KATNAL2 (ENSEASG00005016106)	ENSEASG00005016132	PIAS2 (ENSEASG00005016126)
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00950000183010.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b
Megabat	MODERN SPECIES	2059									MRO (ENSPVAG00000015611)	MAPK4 (ENSPVAG00000015610)	SKA1 (ENSPVAG00000015609)	CXXC1 (ENSPVAG00000015608)	MBD1 (ENSPVAG00000015607)	CFAP53 (ENSPVAG00000015606)	MYO5B (ENSPVAG00000015604)	ACAA2 (ENSPVAG00000015602) ##22
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b.a.b.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00390000002428.a.g.b	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C
Microbat	MODERN SPECIES	953				MEX3C (ENSMLUG00000012585)	SMAD4 (ENSMLUG00000013944)	ENSMLUG00000022522	ELAC1 (ENSMLUG00000013941)	ME2 (ENSMLUG00000013932)	MRO (ENSMLUG00000014572)	MAPK4 (ENSMLUG00000014569)	SKA1 (ENSMLUG00000013388)	CXXC1 (ENSMLUG00000025328)	MBD1 (ENSMLUG00000008286)	ENSMLUG00000016723	MYO5B (ENSMLUG00000016701)	ACAA2 (ENSMLUG00000022960) ##22	LIPG (ENSMLUG00000004113)	ENSMLUG00000029264	DYM (ENSMLUG00000003419)	SMAD7 (ENSMLUG00000016080)	CTIF (ENSMLUG00000003025)	ZBTB7C (ENSMLUG00000030000)	SMAD2 (ENSMLUG00000008857)	ENSMLUG00000028440	ENSMLUG00000028696	HDHD2 (ENSMLUG00000004087)	KATNAL2 (ENSMLUG00000004078)	ENSMLUG00000008902	ST8SIA5 (ENSMLUG00000008890)	LOXHD1 (ENSMLUG00000008832)	RNF165 (ENSMLUG00000008813)
Greater horseshoe bat	MODERN SPECIES	10	STARD6 (ENSRFEG00010017932)	POLI (ENSRFEG00010017875)	MBD2 (ENSRFEG00010017760)	DCC (ENSRFEG00010016811)	MEX3C (ENSRFEG00010016751)	SMAD4 (ENSRFEG00010016623)	ELAC1 (ENSRFEG00010016582)	ME2 (ENSRFEG00010016375)	MRO (ENSRFEG00010016266)	MAPK4 (ENSRFEG00010016193)	SKA1 (ENSRFEG00010015982)	CXXC1 (ENSRFEG00010015320)	MBD1 (ENSRFEG00010015077)	CFAP53 (ENSRFEG00010015022)	MYO5B (ENSRFEG00010014892)	ACAA2 (ENSRFEG00010014660) ##22	LIPG (ENSRFEG00010014542)	C18orf32 (ENSRFEG00010014487)	DYM (ENSRFEG00010014390)	SMAD7 (ENSRFEG00010014226)	CTIF (ENSRFEG00010014128)	ZBTB7C (ENSRFEG00010014086)	SMAD2 (ENSRFEG00010013927)	SKOR2 (ENSRFEG00010013793)	IER3IP1 (ENSRFEG00010013708)	HDHD2 (ENSRFEG00010013605)	ENSRFEG00010013519	KATNAL2 (ENSRFEG00010013030)	PIAS2 (ENSRFEG00010012942)	ENSRFEG00010012921	ST8SIA5 (ENSRFEG00010012732)
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Afrotheria	ANCESTRAL SPECIES	23	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Tenrec	MODERN SPECIES	6029																ACAA2 (ENSETEG00000018454) ##22
Afrotheria_a	ANCESTRAL SPECIES	22	ENSGT00940000161788	ENSGT00940000159487	ENSGT00950000183005.a.b	ENSGT00940000158867	ENSGT00940000160973	ENSGT00940000157435	ENSGT00730000111224	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01100000263809	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Hyrax	MODERN SPECIES	5094																ACAA2 (ENSPCAG00000016357) ##22
Elephant	MODERN SPECIES	375	POLI (ENSLAFG00000014138)	MBD2 (ENSLAFG00000014135)	DCC (ENSLAFG00000001980)	MEX3C (ENSLAFG00000027818)	SMAD4 (ENSLAFG00000012595)	ELAC1 (ENSLAFG00000001538)	ME2 (ENSLAFG00000001536)	MRO (ENSLAFG00000013029)	MAPK4 (ENSLAFG00000013022)	ENSLAFG00000026060	SKA1 (ENSLAFG00000005238)	CXXC1 (ENSLAFG00000030706)	MBD1 (ENSLAFG00000031328)	ENSLAFG00000015611	MYO5B (ENSLAFG00000015591)	ACAA2 (ENSLAFG00000022796) ##22	LIPG (ENSLAFG00000003595)	RPL17 (ENSLAFG00000005569)	C18orf32 (ENSLAFG00000021351)	DYM (ENSLAFG00000017747)	SMAD7 (ENSLAFG00000008013)	CTIF (ENSLAFG00000016335)	ZBTB7C (ENSLAFG00000003436)	SMAD2 (ENSLAFG00000000143)	SKOR2 (ENSLAFG00000020778)	HDHD2 (ENSLAFG00000004419)	KATNAL2 (ENSLAFG00000004417)	PIAS2 (ENSLAFG00000018135)	ST8SIA5 (ENSLAFG00000010716)	LOXHD1 (ENSLAFG00000008500)	ENSLAFG00000030824
Xenarthra	ANCESTRAL SPECIES	329						ENSGT00940000160973	ENSGT00940000157435	ENSGT00950000183134.c.b	ENSGT00940000161642	ENSGT00940000159850	ENSGT00390000011654	ENSGT00730000111044	ENSGT00950000183005.a.a	ENSGT01050000244995	ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.a.a.b.a.a.b.b
Armadillo	MODERN SPECIES	1817			ENSDNOG00000043279	MEX3C (ENSDNOG00000006544)	SMAD4 (ENSDNOG00000005063)	ME2 (ENSDNOG00000012199)	MRO (ENSDNOG00000033380)	MAPK4 (ENSDNOG00000017046)	SKA1 (ENSDNOG00000046917)	ENSDNOG00000046915	CXXC1 (ENSDNOG00000032991)	MBD1 (ENSDNOG00000015998)	CFAP53 (ENSDNOG00000040321)	ENSDNOG00000043862	ENSDNOG00000030882	ACAA2 (ENSDNOG00000011968) ##22	LIPG (ENSDNOG00000011829)	RPL17 (ENSDNOG00000037762)
Sloth	MODERN SPECIES	5543																ACAA2 (ENSCHOG00000009497) ##22
Platypus	MODERN SPECIES	14	C3H18orf54 (ENSOANG00000001795)	STARD6 (ENSOANG00000041469)	POLI (ENSOANG00000001796)	MBD2 (ENSOANG00000001797)	DCC (ENSOANG00000008115)	ENSOANG00000008116	SMAD4 (ENSOANG00000008117)	ELAC1 (ENSOANG00000008118)	ME2 (ENSOANG00000008119)	ENSOANG00000008122	ENSOANG00000045887	ENSOANG00000008124	ENSOANG00000008125	ENSOANG00000008126	MYO5B (ENSOANG00000008127)	ACAA2 (ENSOANG00000002559) ##22	LIPG (ENSOANG00000001131)	ENSOANG00000002910	DYM (ENSOANG00000007612)	ENSOANG00000007611	CTIF (ENSOANG00000001337)	ZBTB7C (ENSOANG00000005929)	SMAD2 (ENSOANG00000001971)	SKOR2 (ENSOANG00000038832)	IER3IP1 (ENSOANG00000045983)	ENSOANG00000042577	HDHD2 (ENSOANG00000012019)	KATNAL2 (ENSOANG00000012018)	PIAS2 (ENSOANG00000012017)	ST8SIA5 (ENSOANG00000014835)	LOXHD1 (ENSOANG00000014833)
Anura	ANCESTRAL SPECIES	158															ENSGT00940000155402.a.b	ENSGT01030000234626.D ##22	ENSGT00940000159394	ENSGT00950000183010.a.b	ENSGT00390000018741	ENSGT00390000008772	ENSGT00940000159872	ENSGT00940000153432.A.b	ENSGT00940000159814	ENSGT00940000153499.a	ENSGT00940000160474	ENSGT00510000047648	ENSGT00940000155805	ENSGT00940000157302	ENSGT01030000234539.a.a.b.b	ENSGT01030000234535.C	ENSGT00390000018830
Frog	MODERN SPECIES		hdhd2 (ENSXETG00000020183)	ier3ip1 (ENSXETG00000046485)	ENSXETG00000038874	ENSXETG00000045677	smad2 (ENSXETG00000020292)	zbtb7c (ENSXETG00000035017)	rpl17 (ENSXETG00000020308)	c18orf32 (ENSXETG00000026840)	dym (ENSXETG00000020310)	smad7 (ENSXETG00000020317)	ctif (ENSXETG00000026836)	tor4a (ENSXETG00000020322)	ENSXETG00000047713	ENSXETG00000047825	myo5b (ENSXETG00000020323)	acaa2 (ENSXETG00000020333) ##22	ENSXETG00000048479	lipg (ENSXETG00000022391)	smad4 (ENSXETG00000022355)	elac1 (ENSXETG00000027126)	me2 (ENSXETG00000022388)	ska1 (ENSXETG00000008946)	mapk4 (ENSXETG00000038723)	ENSXETG00000022361	baat (ENSXETG00000022374)	tspan36 (ENSXETG00000022371)	mex3c (ENSXETG00000022367)	ENSXETG00000046887	ENSXETG00000047581	ENSXETG00000040910	dcc (ENSXETG00000030451)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000000927	ENSLLEG00000000898	SETBP1 (ENSLLEG00000000867)	ENSLLEG00000000828	ENSLLEG00000000804	EPG5 (ENSLLEG00000000678)	ENSLLEG00000000648	PSTPIP2 (ENSLLEG00000000590)	ENSLLEG00000000566	ENSLLEG00000000550	ENSLLEG00000000531	ENSLLEG00000000516	ENSLLEG00000000505	MYO5B (ENSLLEG00000000110)	ENSLLEG00000000021	ACAA2 (ENSLLEG00000000011) ##22	LIPG (ENSLLEG00000004433)	ENSLLEG00000004416	ENSLLEG00000004390	C18orf32 (ENSLLEG00000004379)	ENSLLEG00000004377	ENSLLEG00000004373	ENSLLEG00000004369	DYM (ENSLLEG00000004334)	ENSLLEG00000004313	ENSLLEG00000004310	ENSLLEG00000004306	ENSLLEG00000004298	CTIF (ENSLLEG00000004281)	ZBTB7C (ENSLLEG00000004273)	SMAD2 (ENSLLEG00000004265)
Elephant shark	MODERN SPECIES	1657								MEX3C (ENSCMIG00000013567)	smad4a (ENSCMIG00000013596)	elac1 (ENSCMIG00000013637)	me2 (ENSCMIG00000013701)	ENSCMIG00000013781	ENSCMIG00000013802	ENSCMIG00000013806	myo5b (ENSCMIG00000013834)	acaa2 (ENSCMIG00000013926) ##22	ENSCMIG00000013935	ENSCMIG00000013938	rpl17 (ENSCMIG00000013948)	ENSCMIG00000013965	DYM (ENSCMIG00000013971)	smad7 (ENSCMIG00000014000)	CTIF (ENSCMIG00000014002)	ENSCMIG00000014004	ZBTB7C (ENSCMIG00000014005)	SMAD2 (ENSCMIG00000014014)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01030000234626.D ##22
Hagfish	MODERN SPECIES	1056									ENSEBUG00000000762	ENSEBUG00000009348	ENSEBUG00000013040	ENSEBUG00000004145	ENSEBUG00000002964	ENSEBUG00000014418	AP3B2 (ENSEBUG00000003844)	acaa2 (ENSEBUG00000016427) ##22	ENSEBUG00000010086	ENSEBUG00000002932	ENSEBUG00000002901	ENSEBUG00000011526	ENSEBUG00000001589	ENSEBUG00000016240	ENSEBUG00000006832	ENSEBUG00000009963	ENSEBUG00000006690	ENSEBUG00000006775	ENSEBUG00000010595	ENSEBUG00000003772	ENSEBUG00000005846	ENSEBUG00000006710
Lamprey	MODERN SPECIES	362												ENSPMAG00000006040	ENSPMAG00000006038	CDIN1 (ENSPMAG00000006013)	ENSPMAG00000006012	acaa2 (ENSPMAG00000005983) ##22
Ciona	ANCESTRAL SPECIES	1214															ENSGT00390000012820	ENSGT01030000234626.D ##22
Ciona savignyi	MODERN SPECIES	2	ENSCSAVG00000011036	ENSCSAVG00000011034	ENSCSAVG00000011033	ENSCSAVG00000011032	ENSCSAVG00000011030	ENSCSAVG00000011028	ENSCSAVG00000011027	ENSCSAVG00000011025	ENSCSAVG00000011017	ENSCSAVG00000011014	ENSCSAVG00000011012	ENSCSAVG00000011011	ENSCSAVG00000010992	ENSCSAVG00000010991	ENSCSAVG00000010990	ENSCSAVG00000010942 ##22	ENSCSAVG00000010936	ENSCSAVG00000010927	ENSCSAVG00000010924	ENSCSAVG00000010922	ENSCSAVG00000010920	ENSCSAVG00000010919	ENSCSAVG00000010918	ENSCSAVG00000010917	ENSCSAVG00000010916	ENSCSAVG00000010910	ENSCSAVG00000010908	ENSCSAVG00000010906	ENSCSAVG00000010889	ENSCSAVG00000010887	ENSCSAVG00000010886
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000012772	ENSCING00000012773	ENSCING00000023046	ENSCING00000009550	ENSCING00000022712	ENSCING00000009548	ENSCING00000009547	ENSCING00000012775	ENSCING00000012776	ENSCING00000012777	ENSCING00000009545	arfgap-9 (ENSCING00000012778)	ENSCING00000019317	ENSCING00000017912	ENSCING00000020250	ENSCING00000009542 ##22	ENSCING00000009541	ENSCING00000009540	ENSCING00000024788	ENSCING00000019768	ENSCING00000009539	ENSCING00000018233	ENSCING00000024140	ENSCING00000024207	ENSCING00000009536	ENSCING00000019523	ENSCING00000023634	ENSCING00000009535	ENSCING00000009534	ENSCING00000017943	ENSCING00000020506