Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Gnathostomata	ANCESTRAL SPECIES	102												ENSGT00950000183137.b.b #20	ENSGT00730000111972	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00950000182938.b.b.a	ENSGT00940000158129	ENSGT00940000153451.a.a.b	ENSGT00390000000537	ENSGT00390000003426	ENSGT00910000144291	ENSGT00940000160186	ENSGT00940000157197	ENSGT00940000165849	ENSGT00940000162796	ENSGT00950000183175.B.a	ENSGT00940000155429.b	ENSGT00950000182815.a.a.a.a.b	ENSGT00940000159626
Euteleostomi	ANCESTRAL SPECIES	140										ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000158129	ENSGT00940000153451.a.a.b	ENSGT00390000000537	ENSGT00910000144291	ENSGT00940000160186	ENSGT00940000157197	ENSGT00940000158553.b.b	ENSGT00940000161160	ENSGT00940000165849	ENSGT00940000162796	ENSGT00950000183175.B.a	ENSGT00940000160838	ENSGT00940000155429.b	ENSGT00950000182815.a.a.a.a.b
Sarcopterygii	ANCESTRAL SPECIES	47										ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.b
Tetrapoda	ANCESTRAL SPECIES	29	ENSGT00910000144291	ENSGT00390000003426	ENSGT00940000160017	ENSGT00390000000537	ENSGT00940000153451.a.a.b	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000158761	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.d
Amniota	ANCESTRAL SPECIES	17	ENSGT00910000144291	ENSGT00390000003426	ENSGT00940000160017	ENSGT00390000000537	ENSGT00940000153451.a.a.b	ENSGT00940000158129	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Mammalia	ANCESTRAL SPECIES	30	ENSGT00940000160017	ENSGT00390000000537	ENSGT00940000153451.a.a.b	ENSGT00940000158129	ENSGT00950000182938.b.a	ENSGT00940000158761	ENSGT00520000060726	ENSGT00530000064225	ENSGT00900000141664	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29
Theria	ANCESTRAL SPECIES	18	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00900000141664	ENSGT00530000064225	ENSGT00520000060726
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00900000141664	ENSGT00530000064225	ENSGT00940000162856
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Glires	ANCESTRAL SPECIES	7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Rodentia	ANCESTRAL SPECIES	7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000166334	ENSGT00740000116871
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000166334	ENSGT00740000116871
Muroidea	ANCESTRAL SPECIES	4	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308
Muroidea_A	ANCESTRAL SPECIES	18	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000164814 #32	ENSGT00640000091492.a #36
Murinae	ANCESTRAL SPECIES	17	ENSGT00940000157857 #7	ENSGT00390000000703.h.u #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814.a #32	ENSGT00640000091492.a #36	ENSGT00390000005826.b #37
Mus	ANCESTRAL SPECIES	19	ENSGT00940000157857 #7	ENSGT00390000000703.h.u #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00800000125342	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814.a #32	ENSGT00640000091492.a #36
Mus_A	ANCESTRAL SPECIES	19	ENSGT00940000157857 #7	ENSGT00390000000703.h.u #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00800000125342	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814.a #32	ENSGT00640000091492.a #36
Mus_B	ANCESTRAL SPECIES	19	ENSGT00940000157857 #7	ENSGT00390000000703.h.u.a #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00800000125342	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814.a #32	ENSGT00640000091492.a #36
Mouse	MODERN SPECIES	9	Ndst1 (ENSMUSG00000054008) #7	Rps14 (ENSMUSG00000024608) #8	Cd74 (ENSMUSG00000024610) #9	Tcof1 (ENSMUSG00000024613) #10	Arsi (ENSMUSG00000036412) #11	Camk2a (ENSMUSG00000024617) #12	Slc6a7 (ENSMUSG00000052026) #13	Cdx1 (ENSMUSG00000024619) #14	Pdgfrb (ENSMUSG00000024620) #15	Csf1r (ENSMUSG00000024621) #16	Hmgxb3 (ENSMUSG00000024622) #17	Slc26a2 (ENSMUSG00000034320) #18	Pde6a (ENSMUSG00000024575) #19	Ppargc1b (ENSMUSG00000033871) #20	Arhgef37 (ENSMUSG00000045094) #21	Csnk1a1 (ENSMUSG00000024576) #22	Il17b (ENSMUSG00000024578) #23	Pcyox1l (ENSMUSG00000024579) #24	Grpel2 (ENSMUSG00000024580) #25	Afap1l1 (ENSMUSG00000033032) #26	Ablim3 (ENSMUSG00000032735) #27	Sh3tc2 (ENSMUSG00000045629) #28	Adrb2 (ENSMUSG00000045730) #29	Htr4 (ENSMUSG00000026322) #30	Fbxo38 (ENSMUSG00000042211) #31	Spink10 (ENSMUSG00000044176) #32	Gm36368 (ENSMUSG00000110576) #33	Spink7 (ENSMUSG00000060201) #34	Spink13 (ENSMUSG00000073551) #35	Apcdd1 (ENSMUSG00000071847) #36	Napg (ENSMUSG00000024581) #37
Mus_C	ANCESTRAL SPECIES	16	ENSGT00940000157857 #7	ENSGT00390000000703.h.u.a #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00800000125342	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814.a #32	ENSGT00640000091492.a #36
Steppe mouse	MODERN SPECIES	1627																Csnk1a1 (ENSMSIG00000002763) #22
spretus	MODERN SPECIES	9	Ndst1 (MGP_SPRETEiJ_G0023222) #7	Rps14 (MGP_SPRETEiJ_G0023223) #8	Cd74 (MGP_SPRETEiJ_G0023224) #9	Tcof1 (MGP_SPRETEiJ_G0023225) #10	Arsi (MGP_SPRETEiJ_G0023226) #11	Camk2a (MGP_SPRETEiJ_G0023227) #12	Slc6a7 (MGP_SPRETEiJ_G0023228) #13	Cdx1 (MGP_SPRETEiJ_G0023229) #14	Pdgfrb (MGP_SPRETEiJ_G0023230) #15	Csf1r (MGP_SPRETEiJ_G0023231) #16	Hmgxb3 (MGP_SPRETEiJ_G0023232) #17	Slc26a2 (MGP_SPRETEiJ_G0023233) #18	Pde6a (MGP_SPRETEiJ_G0023234) #19	Ppargc1b (MGP_SPRETEiJ_G0023235) #20	Arhgef37 (MGP_SPRETEiJ_G0023236) #21	Csnk1a1 (MGP_SPRETEiJ_G0023237) #22	Il17b (MGP_SPRETEiJ_G0023238) #23	Pcyox1l (MGP_SPRETEiJ_G0023239) #24	Grpel2 (MGP_SPRETEiJ_G0023240) #25	Afap1l1 (MGP_SPRETEiJ_G0023241) #26	Ablim3 (MGP_SPRETEiJ_G0023242) #27	Sh3tc2 (MGP_SPRETEiJ_G0023243) #28	Adrb2 (MGP_SPRETEiJ_G0023244) #29	MGP_SPRETEiJ_G0023245	Htr4 (MGP_SPRETEiJ_G0023246) #30	Fbxo38 (MGP_SPRETEiJ_G0023247) #31	Spink7 (MGP_SPRETEiJ_G0023248) #34	Spink13 (MGP_SPRETEiJ_G0023249) #35	Spink10 (MGP_SPRETEiJ_G0023250) #32	Apcdd1 (MGP_SPRETEiJ_G0023251) #36	Napg (MGP_SPRETEiJ_G0023252) #37
Ryukyu mouse	MODERN SPECIES	9	Ndst1 (MGP_CAROLIEiJ_G0022310) #7	Rps14 (MGP_CAROLIEiJ_G0022311) #8	Cd74 (MGP_CAROLIEiJ_G0022312) #9	Tcof1 (MGP_CAROLIEiJ_G0022313) #10	Arsi (MGP_CAROLIEiJ_G0022314) #11	Camk2a (MGP_CAROLIEiJ_G0022315) #12	Slc6a7 (MGP_CAROLIEiJ_G0022316) #13	Cdx1 (MGP_CAROLIEiJ_G0022317) #14	Pdgfrb (MGP_CAROLIEiJ_G0022318) #15	Csf1r (MGP_CAROLIEiJ_G0022319) #16	Hmgxb3 (MGP_CAROLIEiJ_G0022320) #17	Slc26a2 (MGP_CAROLIEiJ_G0022321) #18	Pde6a (MGP_CAROLIEiJ_G0022322) #19	Ppargc1b (MGP_CAROLIEiJ_G0022323) #20	Arhgef37 (MGP_CAROLIEiJ_G0022324) #21	Csnk1a1 (MGP_CAROLIEiJ_G0022325) #22	Il17b (MGP_CAROLIEiJ_G0022326) #23	Pcyox1l (MGP_CAROLIEiJ_G0022327) #24	Grpel2 (MGP_CAROLIEiJ_G0022328) #25	Afap1l1 (MGP_CAROLIEiJ_G0022329) #26	Ablim3 (MGP_CAROLIEiJ_G0022330) #27	Sh3tc2 (MGP_CAROLIEiJ_G0022331) #28	Adrb2 (MGP_CAROLIEiJ_G0022332) #29	MGP_CAROLIEiJ_G0022333	Htr4 (MGP_CAROLIEiJ_G0022334) #30	Fbxo38 (MGP_CAROLIEiJ_G0022335) #31	Spink7 (MGP_CAROLIEiJ_G0022336) #34	Spink13 (MGP_CAROLIEiJ_G0022337) #35	Spink10 (MGP_CAROLIEiJ_G0022338) #32	MGP_CAROLIEiJ_G0022339	Apcdd1 (MGP_CAROLIEiJ_G0022340) #36
Shrew mouse	MODERN SPECIES	6	Ndst1 (MGP_PahariEiJ_G0019040) #7	Rps14 (MGP_PahariEiJ_G0019041) #8	MGP_PahariEiJ_G0019042 #9	Tcof1 (MGP_PahariEiJ_G0019043) #10	Arsi (MGP_PahariEiJ_G0019044) #11	Camk2a (MGP_PahariEiJ_G0019045) #12	Slc6a7 (MGP_PahariEiJ_G0019046) #13	Cdx1 (MGP_PahariEiJ_G0019047) #14	Pdgfrb (MGP_PahariEiJ_G0019048) #15	Csf1r (MGP_PahariEiJ_G0019049) #16	Hmgxb3 (MGP_PahariEiJ_G0019050) #17	Slc26a2 (MGP_PahariEiJ_G0019051) #18	Pde6a (MGP_PahariEiJ_G0019052) #19	Ppargc1b (MGP_PahariEiJ_G0019053) #20	Arhgef37 (MGP_PahariEiJ_G0019054) #21	Csnk1a1 (MGP_PahariEiJ_G0019055) #22	Il17b (MGP_PahariEiJ_G0019056) #23	Pcyox1l (MGP_PahariEiJ_G0019057) #24	Grpel2 (MGP_PahariEiJ_G0019058) #25	Afap1l1 (MGP_PahariEiJ_G0019059) #26	Ablim3 (MGP_PahariEiJ_G0019060) #27	Sh3tc2 (MGP_PahariEiJ_G0019061) #28	Adrb2 (MGP_PahariEiJ_G0019062) #29	MGP_PahariEiJ_G0019063	Htr4 (MGP_PahariEiJ_G0019064) #30	Fbxo38 (MGP_PahariEiJ_G0019065) #31	Spink7 (MGP_PahariEiJ_G0019066) #34	Spink13 (MGP_PahariEiJ_G0019067) #35	Spink10 (MGP_PahariEiJ_G0019068) #32	Apcdd1 (MGP_PahariEiJ_G0019069) #36	Napg (MGP_PahariEiJ_G0019070) #37
Rat	MODERN SPECIES	9	Ndst1 (ENSRNOG00000019014) #7	Rps14 (ENSRNOG00000018774) ##8	Cd74 (ENSRNOG00000018735) #9	Tcof1 (ENSRNOG00000026108) #10	Arsi (ENSRNOG00000026060) #11	Camk2a (ENSRNOG00000018712) #12	Slc6a7 (ENSRNOG00000018644) #13	Cdx1 (ENSRNOG00000060334) #14	Pdgfrb (ENSRNOG00000018461) #15	Csf1r (ENSRNOG00000018414) #16	Hmgxb3 (ENSRNOG00000018132) #17	Slc26a2 (ENSRNOG00000018082) #18	Pde6a (ENSRNOG00000017816) #19	Ppargc1b (ENSRNOG00000017503) #20	Arhgef37 (ENSRNOG00000025502) #21	Csnk1a1 (ENSRNOG00000063313) #22	Il17b (ENSRNOG00000019695) #23	Pcyox1l (ENSRNOG00000019643) #24	Grpel2 (ENSRNOG00000064275) #25	Afap1l1 (ENSRNOG00000019403) #26	Ablim3 (ENSRNOG00000019365) #27	Sh3tc2 (ENSRNOG00000019305) #28	Adrb2 (ENSRNOG00000019217) #29	ENSRNOG00000068793	Htr4 (ENSRNOG00000019134) #30	Fbxo38 (ENSRNOG00000019063) #31	LOC102547035 (ENSRNOG00000058091) #33	Spink7 (ENSRNOG00000032873) #34	Spink13 (ENSRNOG00000038793) #35	Spink10 (ENSRNOG00000043250) #32	Apcdd1 (ENSRNOG00000043304) #36
Cricetidae	ANCESTRAL SPECIES	18	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.c.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814 #32	ENSGT00640000091492.a #36	ENSGT00390000005826.b #37
Cricetidae_B	ANCESTRAL SPECIES	15	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.c.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000164814 #32	ENSGT00640000091492.a #36
Prairie vole	MODERN SPECIES	5	Ndst1 (ENSMOCG00000023013) #7	ENSMOCG00000005011 #8	Cd74 (ENSMOCG00000008628) #9	Tcof1 (ENSMOCG00000007081) #10	Arsi (ENSMOCG00000011780) #11	Camk2a (ENSMOCG00000006768) #12	Slc6a7 (ENSMOCG00000021402) #13	Cdx1 (ENSMOCG00000005003) #14	Pdgfrb (ENSMOCG00000015349) #15	Csf1r (ENSMOCG00000018935) #16	Hmgxb3 (ENSMOCG00000014574) #17	Slc26a2 (ENSMOCG00000020889) #18	Pde6a (ENSMOCG00000007130) #19	Ppargc1b (ENSMOCG00000014885) #20	Arhgef37 (ENSMOCG00000017841) #21	Csnk1a1 (ENSMOCG00000014668) #22	Il17b (ENSMOCG00000003368) #23	Pcyox1l (ENSMOCG00000002804) #24	Grpel2 (ENSMOCG00000005100) #25	Afap1l1 (ENSMOCG00000009034) #26	Ablim3 (ENSMOCG00000022187) #27	Sh3tc2 (ENSMOCG00000001886) #28	Adrb2 (ENSMOCG00000002446) #29	Htr4 (ENSMOCG00000007510) #30	Fbxo38 (ENSMOCG00000015410) #31	Gm36368 (ENSMOCG00000003300) #33	Spink7 (ENSMOCG00000017843) #34	Spink13 (ENSMOCG00000019263) #35	ENSMOCG00000022868	ENSMOCG00000002924	Apcdd1 (ENSMOCG00000009393) #36
Northern American deer mouse	MODERN SPECIES	10	Synpo (ENSPEMG00000013062)	Ndst1 (ENSPEMG00000009619) #7	ENSPEMG00000000346 #8	Cd74 (ENSPEMG00000015385) #9	Arsi (ENSPEMG00000017637) #11	Camk2a (ENSPEMG00000016613) #12	Slc6a7 (ENSPEMG00000015046) #13	Cdx1 (ENSPEMG00000029534) #14	Pdgfrb (ENSPEMG00000016131) #15	Csf1r (ENSPEMG00000010942) #16	Hmgxb3 (ENSPEMG00000009704) #17	Slc26a2 (ENSPEMG00000026991) #18	Pde6a (ENSPEMG00000007308) #19	Ppargc1b (ENSPEMG00000018822) #20	Arhgef37 (ENSPEMG00000006816) #21	Csnk1a1 (ENSPEMG00000015069) #22	Il17b (ENSPEMG00000016022) #23	Pcyox1l (ENSPEMG00000008397) #24	ENSPEMG00000031083 #25	Afap1l1 (ENSPEMG00000012507) #26	Ablim3 (ENSPEMG00000006536) #27	Sh3tc2 (ENSPEMG00000002472) #28	Adrb2 (ENSPEMG00000018963) #29	Htr4 (ENSPEMG00000018290) #30	Fbxo38 (ENSPEMG00000003062) #31	Gm36368 (ENSPEMG00000008650) #33	Spink7 (ENSPEMG00000009248) #34	Spink13 (ENSPEMG00000010732) #35	ENSPEMG00000010935 #32	Apcdd1 (ENSPEMG00000018854) #36	Napg (ENSPEMG00000017100) #37
Cricetinae	ANCESTRAL SPECIES	14	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b.e #24	ENSGT00390000005589.a.b.c.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000164814 #32	ENSGT00640000091492.a #36	ENSGT00390000005826.b #37
Chinese hamster chok1gshd	MODERN SPECIES	153	ENSCGRG00001007906	RPS14 (ENSCGRG00001019064) #8	Cd74 (ENSCGRG00001022698) #9	Tcof1 (ENSCGRG00001009700) #10	Arsi (ENSCGRG00001004125) #11	ENSCGRG00001022640	Slc6a7 (ENSCGRG00001006717) #13	Cdx1 (ENSCGRG00001016843) #14	Pdgfrb (ENSCGRG00001022643) #15	Csf1r (ENSCGRG00001013504) #16	Hmgxb3 (ENSCGRG00001022214) #17	Slc26a2 (ENSCGRG00001016363) #18	Pde6a (ENSCGRG00001018960) #19	Ppargc1b (ENSCGRG00001017949) #20	Arhgef37 (ENSCGRG00001011933) #21	Csnk1a1 (ENSCGRG00001015873) #22	ENSCGRG00001021849	Il17b (ENSCGRG00001005197) #23	ENSCGRG00001024056 #24	ENSCGRG00001022902 #24	Afap1l1 (ENSCGRG00001018190) #26	Ablim3 (ENSCGRG00001021818) #27	Sh3tc2 (ENSCGRG00001020826) #28	Adrb2 (ENSCGRG00001009662) #29	Htr4 (ENSCGRG00001012683) #30	Fbxo38 (ENSCGRG00001021538) #31	Gm36368 (ENSCGRG00001012234) #33	Spink7 (ENSCGRG00001024419) #34	Spink13 (ENSCGRG00001022801) #35	ENSCGRG00001011180 #32	Apcdd1 (ENSCGRG00001023871) #36
Golden Hamster	MODERN SPECIES	665	Ndst1 (ENSMAUG00000017050) #7	ENSMAUG00000015670 #8	Cd74 (ENSMAUG00000015863) #9	Tcof1 (ENSMAUG00000000553) #10	Arsi (ENSMAUG00000000226) #11	Camk2a (ENSMAUG00000019808) #12	Slc6a7 (ENSMAUG00000009461) #13	Cdx1 (ENSMAUG00000013537) #14	Pdgfrb (ENSMAUG00000012051) #15	Csf1r (ENSMAUG00000009005) #16	Hmgxb3 (ENSMAUG00000018828) #17	Slc26a2 (ENSMAUG00000013332) #18	Pde6a (ENSMAUG00000002281) #19	Ppargc1b (ENSMAUG00000014191) #20	Arhgef37 (ENSMAUG00000005987) #21	Csnk1a1 (ENSMAUG00000001051) #22	Il17b (ENSMAUG00000015682) #23	Grpel2 (ENSMAUG00000014948) #25	Afap1l1 (ENSMAUG00000010737) #26	Ablim3 (ENSMAUG00000019807) #27	Sh3tc2 (ENSMAUG00000019540) #28	Adrb2 (ENSMAUG00000017373) #29	Htr4 (ENSMAUG00000006143) #30	Fbxo38 (ENSMAUG00000019180) #31	Gm36368 (ENSMAUG00000015079) #33	Spink7 (ENSMAUG00000009498) #34	Spink13 (ENSMAUG00000007928) #35	ENSMAUG00000013780 #32	Apcdd1 (ENSMAUG00000010015) #36	ENSMAUG00000000968 #37	Piezo2 (ENSMAUG00000015407)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1881	ENSNGAG00000005556	Kynu (ENSNGAG00000015519)	Arhgap15 (ENSNGAG00000003717)	Gtdc1 (ENSNGAG00000011627)	ENSNGAG00000000981	Zeb2 (ENSNGAG00000016618)	Acvr2a (ENSNGAG00000020006)	Orc4 (ENSNGAG00000012001)	Mbd5 (ENSNGAG00000018784)	Epc2 (ENSNGAG00000015488)	Kif5c (ENSNGAG00000020904)	Lypd6b (ENSNGAG00000012606)	Lypd6 (ENSNGAG00000010779)	Mmadhc (ENSNGAG00000008470)	ENSNGAG00000014803	ENSNGAG00000000384 #22	Rnd3 (ENSNGAG00000001477)	Tas2r134 (ENSNGAG00000015380)	Rbm43 (ENSNGAG00000016028)	ENSNGAG00000013509	Tnfaip6 (ENSNGAG00000007671)	Rif1 (ENSNGAG00000009268)	ENSNGAG00000011525
Upper Galilee mountains blind mole rat	MODERN SPECIES	1233	Elf2 (ENSNGAG00000011982)	ENSNGAG00000015210	Ndufc1 (ENSNGAG00000019599)	Naa15 (ENSNGAG00000020578)	Rab33b (ENSNGAG00000015807)	ENSNGAG00000016240	Mgst2 (ENSNGAG00000017878)	Maml3 (ENSNGAG00000020253)	Scoc (ENSNGAG00000011163)	Clgn (ENSNGAG00000013400)	Mgat4d (ENSNGAG00000019938)	Elmod2 (ENSNGAG00000001153)	Ucp1 (ENSNGAG00000003442)	Tbc1d9 (ENSNGAG00000007389)	Rnf150 (ENSNGAG00000018575)	ENSNGAG00000001858 #22	Zfp330 (ENSNGAG00000004253)	ENSNGAG00000003516	Inpp4b (ENSNGAG00000004652)	ENSNGAG00000017839	Usp38 (ENSNGAG00000020013)	Gab1 (ENSNGAG00000015926)	Smarca5 (ENSNGAG00000000441)	ENSNGAG00000009664	Fstl5 (ENSNGAG00000018141)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1018												Slc26a2 (ENSNGAG00000019650) #18	Pde6a (ENSNGAG00000019377) #19	Ppargc1b (ENSNGAG00000016998) #20	Arhgef37 (ENSNGAG00000015605) #21	ENSNGAG00000014437 #22	Il17b (ENSNGAG00000013221) #23	Pcyox1l (ENSNGAG00000012349) #24	Grpel2 (ENSNGAG00000011908) #25	ENSNGAG00000011362	Afap1l1 (ENSNGAG00000009627) #26	Ablim3 (ENSNGAG00000001557) #27	ENSNGAG00000020302	ENSNGAG00000020126	Sh3tc2 (ENSNGAG00000018960) #28	Htr4 (ENSNGAG00000017150) #30
Upper Galilee mountains blind mole rat	MODERN SPECIES	503								ENSNGAG00000014283	Tbx22 (ENSNGAG00000023862)	Chmp1b2 (ENSNGAG00000023090)	ENSNGAG00000024238	Brwd3 (ENSNGAG00000021381)	ENSNGAG00000021355	ENSNGAG00000018332	Sh3bgrl (ENSNGAG00000008553)	ENSNGAG00000023856 #22	ENSNGAG00000018747	Pou3f4 (ENSNGAG00000013024)	Rps6ka6 (ENSNGAG00000013321)	Hdx (ENSNGAG00000022021)	ENSNGAG00000020473	ENSNGAG00000007069	4933403O08Rik (ENSNGAG00000001929)	Apool (ENSNGAG00000023555)	Zfp711 (ENSNGAG00000015585)	Pof1b (ENSNGAG00000024266)	Chm (ENSNGAG00000011917)	Dach2 (ENSNGAG00000023673)	Klhl4 (ENSNGAG00000023295)	ENSNGAG00000021206
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	191																ENSJJAG00000013290 #22	Eps15 (ENSJJAG00000000238)	ENSJJAG00000014909	ENSJJAG00000015718	Lrrc14b (ENSJJAG00000015937)	Ccdc127 (ENSJJAG00000016279)	Sdha (ENSJJAG00000016564)	ENSJJAG00000018975	Ahrr (ENSJJAG00000019188)	ENSJJAG00000020371	Ropn1l (ENSJJAG00000021036)	Marchf6 (ENSJJAG00000021768)	Cmbl (ENSJJAG00000012175)	ENSJJAG00000012729	Sema5a (ENSJJAG00000014109)	ENSJJAG00000018263
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	184							Sema6d (ENSJJAG00000017228)	ENSJJAG00000020214	ENSJJAG00000012377	ENSJJAG00000012383	ENSJJAG00000020506	Sqor (ENSJJAG00000022157)	ENSJJAG00000022498	Slc30a4 (ENSJJAG00000022834)	Or4n5 (ENSJJAG00000023766)	ENSJJAG00000019743 #22	ENSJJAG00000012206	ENSJJAG00000012234	Or4m1 (ENSJJAG00000012228)	Or4k1 (ENSJJAG00000012249)	ENSJJAG00000012244	ENSJJAG00000020853	Ttc5 (ENSJJAG00000000234)	ENSJJAG00000012265	ENSJJAG00000000726	Parp2 (ENSJJAG00000006912)	Tep1 (ENSJJAG00000000067)	Klhl33 (ENSJJAG00000002330)	ENSJJAG00000007593	Osgep (ENSJJAG00000010067)	ENSJJAG00000012067
Lesser Egyptian jerboa	MODERN SPECIES	58	Ldb2 (ENSJJAG00000014327)	ENSJJAG00000017776	Tapt1 (ENSJJAG00000015027)	Prom1 (ENSJJAG00000015809)	Cd38 (ENSJJAG00000011604)	Bst1 (ENSJJAG00000016828)	Fbxl5 (ENSJJAG00000003494)	Cc2d2a (ENSJJAG00000013328)	C1qtnf7 (ENSJJAG00000009907)	ENSJJAG00000013747	ENSJJAG00000018431	ENSJJAG00000016939	ENSJJAG00000012742	ENSJJAG00000018843	Bod1l (ENSJJAG00000012901)	ENSJJAG00000022446 #22	ENSJJAG00000014794	Nkx3-2 (ENSJJAG00000009928)	Rab28 (ENSJJAG00000016647)	ENSJJAG00000010251	ENSJJAG00000013791	Pigg (ENSJJAG00000009749)	Pde6b (ENSJJAG00000008660)	Atp5k (ENSJJAG00000012024)	Mfsd7a (ENSJJAG00000022347)	Pcgf3 (ENSJJAG00000014201)	Cplx1 (ENSJJAG00000017665)	ENSJJAG00000011664	Tmem175 (ENSJJAG00000019864)	Dgkq (ENSJJAG00000000943)	Slc26a1 (ENSJJAG00000024417) ##18
Lesser Egyptian jerboa	MODERN SPECIES	113	Arsi (ENSJJAG00000002346) #11	Camk2a (ENSJJAG00000011066) #12	Slc6a7 (ENSJJAG00000021358) #13	Cdx1 (ENSJJAG00000019049) #14	Pdgfrb (ENSJJAG00000016117) #15	ENSJJAG00000014141	Csf1r (ENSJJAG00000022296) #16	Hmgxb3 (ENSJJAG00000012795) #17	Slc26a2 (ENSJJAG00000010661) #18	Pde6a (ENSJJAG00000003639) #19	ENSJJAG00000019481	Ppargc1b (ENSJJAG00000018633) #20	ENSJJAG00000015885	Arhgef37 (ENSJJAG00000022039) #21	ENSJJAG00000021433	ENSJJAG00000017594 #22	Il17b (ENSJJAG00000013607) #23	Pcyox1l (ENSJJAG00000010362) #24	ENSJJAG00000001426 #25	ENSJJAG00000021995 #26	Ablim3 (ENSJJAG00000023419) #27	Sh3tc2 (ENSJJAG00000018953) #28	ENSJJAG00000017717	ENSJJAG00000020095	Htr4 (ENSJJAG00000017156) #30	Fbxo38 (ENSJJAG00000002802) #31	Gm36368 (ENSJJAG00000023568) #33	Spink7 (ENSJJAG00000023412) #34	Spink13 (ENSJJAG00000020648) #35	ENSJJAG00000019051	ENSJJAG00000012629
Lesser Egyptian jerboa	MODERN SPECIES	194	ENSJJAG00000021608	ENSJJAG00000013718	ENSJJAG00000013681	ENSJJAG00000012941	ENSJJAG00000012933	ENSJJAG00000000223	Zfp184 (ENSJJAG00000000455)	Pom121l2 (ENSJJAG00000014729)	Prss16 (ENSJJAG00000015051)	ENSJJAG00000016030	ENSJJAG00000022549	ENSJJAG00000005342	Abt1 (ENSJJAG00000012693)	Btn1a1 (ENSJJAG00000013358)	Btn2a2 (ENSJJAG00000015456)	ENSJJAG00000015919 #22	ENSJJAG00000013454	ENSJJAG00000013528	ENSJJAG00000017822	ENSJJAG00000013504	ENSJJAG00000019011	ENSJJAG00000013520	ENSJJAG00000013004	H1f2 (ENSJJAG00000013025)	ENSJJAG00000013015	ENSJJAG00000013041	H1f1 (ENSJJAG00000013035)	Trim38 (ENSJJAG00000015008)	Slc17a2 (ENSJJAG00000015597)	Slc17a3 (ENSJJAG00000009931)
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	500							Col12a1 (ENSDORG00000010155)	ENSDORG00000015425	Tmem30a (ENSDORG00000015416)	Filip1 (ENSDORG00000006350)	Senp6 (ENSDORG00000011733)	Myo6 (ENSDORG00000004222)	ENSDORG00000004225	Htr1b (ENSDORG00000001316)	Mei4 (ENSDORG00000001690)	ENSDORG00000028872 #22	ENSDORG00000024501	Irak1bp1 (ENSDORG00000024102)	Phip (ENSDORG00000012738)	Hmgn3 (ENSDORG00000012112)
Kangaroo rat	DUPLICATION
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	412	Cd274 (ENSDORG00000000929)	ENSDORG00000024974	Ric1 (ENSDORG00000008573)	Ermp1 (ENSDORG00000002255)	Mlana (ENSDORG00000015841)	9930021J03Rik (ENSDORG00000015845)	Ranbp6 (ENSDORG00000029872)	ENSDORG00000024030	Il33 (ENSDORG00000009313)	Uhrf2 (ENSDORG00000007670)	Gldc (ENSDORG00000007671)	ENSDORG00000007953	Dmac1 (ENSDORG00000024220)	Ptprd (ENSDORG00000010031)	ENSDORG00000027933	ENSDORG00000024117 #22	Tyrp1 (ENSDORG00000013533)	Lurap1l (ENSDORG00000025461)	ENSDORG00000025413	ENSDORG00000024854
Kangaroo rat	MODERN SPECIES	473										ENSDORG00000027885	ENSDORG00000029529	Bmp15 (ENSDORG00000013624)	Shroom4 (ENSDORG00000000705)	Dgkk (ENSDORG00000006816)	Akap4 (ENSDORG00000014873)	ENSDORG00000010063 #22	ENSDORG00000025389	Clcn5 (ENSDORG00000012593)	Usp27x (ENSDORG00000029639)	Ppp1r3f (ENSDORG00000025455)	Foxp3 (ENSDORG00000000868)	Ccdc22 (ENSDORG00000000867)	ENSDORG00000030242	Syp (ENSDORG00000000864)	Prickle3 (ENSDORG00000003456)	ENSDORG00000003454	Magix (ENSDORG00000027723)	Gpkow (ENSDORG00000013663)	ENSDORG00000013938	Praf2 (ENSDORG00000024385)	Ccdc120 (ENSDORG00000013934)
Kangaroo rat	MODERN SPECIES	404	Synpo (ENSDORG00000005325)	Ndst1 (ENSDORG00000016071) #7	ENSDORG00000007146 #8	Cd74 (ENSDORG00000001514) #9	Arsi (ENSDORG00000009222) #11	Camk2a (ENSDORG00000009223) #12	Slc6a7 (ENSDORG00000000014) #13	Cdx1 (ENSDORG00000029630) #14	Pdgfrb (ENSDORG00000009895) #15	Csf1r (ENSDORG00000009892) #16	Hmgxb3 (ENSDORG00000009890) #17	Slc26a2 (ENSDORG00000027006) #18	Pde6a (ENSDORG00000012607) #19	Ppargc1b (ENSDORG00000012605) #20	Arhgef37 (ENSDORG00000016036) #21	ENSDORG00000011907 #22	Il17b (ENSDORG00000011138) #23	Pcyox1l (ENSDORG00000011140) #24	Grpel2 (ENSDORG00000029163) #25	Afap1l1 (ENSDORG00000013435) #26	Ablim3 (ENSDORG00000004812) #27	Sh3tc2 (ENSDORG00000016298) #28	ENSDORG00000024403	Htr4 (ENSDORG00000011917) #30	Fbxo38 (ENSDORG00000008958) #31	Gm36368 (ENSDORG00000025096) #33	Spink7 (ENSDORG00000015485) #34	ENSDORG00000027988 #35	Gm37797 (ENSDORG00000026147)	Spink6 (ENSDORG00000005808)	Spink5 (ENSDORG00000009521)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00900000141664
Hystricomorpha	ANCESTRAL SPECIES	27	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Hystricomorpha_a	ANCESTRAL SPECIES	24	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Hystricomorpha_b	ANCESTRAL SPECIES	57	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00740000116871	ENSGT00530000064225	ENSGT00510000048608	ENSGT00390000011484
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	81	ENSODEG00000005622 #8	CD74 (ENSODEG00000006374) #9	ENSODEG00000005372 #10	ARSI (ENSODEG00000005121) #11	CAMK2A (ENSODEG00000006434) #12	SLC6A7 (ENSODEG00000005582) #13	CDX1 (ENSODEG00000005756) #14	PDGFRB (ENSODEG00000007189) #15	CSF1R (ENSODEG00000004884) #16	HMGXB3 (ENSODEG00000006575) #17	SLC26A2 (ENSODEG00000006352) #18	ENSODEG00000005721 #19	PPARGC1B (ENSODEG00000004901) #20	ARHGEF37 (ENSODEG00000006724) #21	ENSODEG00000006577	ENSODEG00000006337 #22	IL17B (ENSODEG00000006115) #23	PCYOX1L (ENSODEG00000006043) #24	GRPEL2 (ENSODEG00000005652) #25	AFAP1L1 (ENSODEG00000005278) #26	ABLIM3 (ENSODEG00000005665) #27	SH3TC2 (ENSODEG00000005803) #28	HTR4 (ENSODEG00000005142) #30	FBXO38 (ENSODEG00000006237) #31	ENSODEG00000006116 #33	SPINK7 (ENSODEG00000005558) #34	ENSODEG00000005177	SPINK6 (ENSODEG00000005901)	ENSODEG00000019231	SPINK5 (ENSODEG00000005846)	C5orf46 (ENSODEG00000006859)
Degu	MODERN SPECIES	56	ENSODEG00000008091	STK31 (ENSODEG00000008172)	ENSODEG00000009491	ENSODEG00000019686	ENSODEG00000019512	ENSODEG00000007836	NPY (ENSODEG00000008296)	PALS2 (ENSODEG00000007676)	ENSODEG00000007712	OSBPL3 (ENSODEG00000008161)	ENSODEG00000007611	C7orf31 (ENSODEG00000008263)	ENSODEG00000011380	NPVF (ENSODEG00000009144)	ENSODEG00000007198	ENSODEG00000007532 #22	NFE2L3 (ENSODEG00000007181)	ENSODEG00000008757	ENSODEG00000008405	SNX10 (ENSODEG00000007480)	ENSODEG00000019395	SKAP2 (ENSODEG00000008150)	ENSODEG00000009507	HOXA1 (ENSODEG00000008589)	HOXA2 (ENSODEG00000009002)	HOXA3 (ENSODEG00000009161)	ENSODEG00000007568	HOXA5 (ENSODEG00000007850)	HOXA6 (ENSODEG00000007928)	HOXA7 (ENSODEG00000008762)	HOXA9 (ENSODEG00000009347)
Degu	MODERN SPECIES	200	SVIP (ENSODEG00000000706)	ENSODEG00000000771	ENSODEG00000000779	FANCF (ENSODEG00000000786)	SLC17A6 (ENSODEG00000000829)	ANO5 (ENSODEG00000000906)	ENSODEG00000000998	NELL1 (ENSODEG00000000600)	ENSODEG00000018648	SLC6A5 (ENSODEG00000000719)	PRMT3 (ENSODEG00000000824)	ENSODEG00000000894	HTATIP2 (ENSODEG00000000910)	DBX1 (ENSODEG00000000930)	NAV2 (ENSODEG00000001086)	ENSODEG00000001265 #22	E2F8 (ENSODEG00000001309)	CSRP3 (ENSODEG00000001395)	ZDHHC13 (ENSODEG00000001434)	ENSODEG00000001474	ENSODEG00000001487
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	141	MPDZ (ENSCLAG00000007286)	ENSCLAG00000014441	LURAP1L (ENSCLAG00000013531)	TYRP1 (ENSCLAG00000007960)	PTPRD (ENSCLAG00000005730)	DMAC1 (ENSCLAG00000007861)	KDM4C (ENSCLAG00000006468)	GLDC (ENSCLAG00000005815)	UHRF2 (ENSCLAG00000004646)	IL33 (ENSCLAG00000008507)	RANBP6 (ENSCLAG00000017716)	KIAA2026 (ENSCLAG00000010624)	MLANA (ENSCLAG00000005918)	ERMP1 (ENSCLAG00000004784)	RIC1 (ENSCLAG00000008085)	ENSCLAG00000007197 #22	CD274 (ENSCLAG00000006370)	PLGRKT (ENSCLAG00000008570)	INSL6 (ENSCLAG00000007423)	JAK2 (ENSCLAG00000005091)	RCL1 (ENSCLAG00000007445)	AK3 (ENSCLAG00000006329)	CDC37L1 (ENSCLAG00000005805)	PLPP6 (ENSCLAG00000017735)	SPATA6L (ENSCLAG00000010497)	ENSCLAG00000009476	SLC1A1 (ENSCLAG00000009832)	ENSCLAG00000009238	GLIS3 (ENSCLAG00000008116)	RFX3 (ENSCLAG00000009044)	PUM3 (ENSCLAG00000011892)
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	122	NDST1 (ENSCLAG00000014298) #7	ENSCLAG00000017348 #8	CD74 (ENSCLAG00000014142) #9	TCOF1 (ENSCLAG00000010605) #10	ARSI (ENSCLAG00000014790) #11	CAMK2A (ENSCLAG00000012010) #12	SLC6A7 (ENSCLAG00000011923) #13	CDX1 (ENSCLAG00000009492) #14	PDGFRB (ENSCLAG00000009688) #15	CSF1R (ENSCLAG00000011617) #16	HMGXB3 (ENSCLAG00000010310) #17	SLC26A2 (ENSCLAG00000014413) #18	PDE6A (ENSCLAG00000015700) #19	PPARGC1B (ENSCLAG00000015452) #20	ARHGEF37 (ENSCLAG00000012033) #21	ENSCLAG00000010744 #22	IL17B (ENSCLAG00000012430) #23	PCYOX1L (ENSCLAG00000010474) #24	AFAP1L1 (ENSCLAG00000010477) #26	ABLIM3 (ENSCLAG00000015956) #27	SH3TC2 (ENSCLAG00000012078) #28	ADRB2 (ENSCLAG00000017769) #29	HTR4 (ENSCLAG00000010344) #30	FBXO38 (ENSCLAG00000011431) #31	ENSCLAG00000011836 #33	SPINK7 (ENSCLAG00000012052) #34	SPINK6 (ENSCLAG00000010382)	SPINK5 (ENSCLAG00000010015)	C5orf46 (ENSCLAG00000013364)	SCGB3A2 (ENSCLAG00000012325)	SPINK1 (ENSCLAG00000009591)
Long-tailed chinchilla	MODERN SPECIES	151															TOX (ENSCLAG00000001738)	ENSCLAG00000017560 #22	ENSCLAG00000001666	CA8 (ENSCLAG00000001651)	RAB2A (ENSCLAG00000005708)	CHD7 (ENSCLAG00000004679)	CLVS1 (ENSCLAG00000004144)	ASPH (ENSCLAG00000002027)	ENSCLAG00000001927	NKAIN3 (ENSCLAG00000001900)	ENSCLAG00000017475	GGH (ENSCLAG00000001733)	TTPA (ENSCLAG00000002703)	YTHDF3 (ENSCLAG00000002515)	ENSCLAG00000002409	CYP7B1 (ENSCLAG00000002352)	ARMC1 (ENSCLAG00000002293)
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	46	ENSCPOG00000005409	CHRDL1 (ENSCPOG00000006712)	PAK3 (ENSCPOG00000000651)	CAPN6 (ENSCPOG00000000652)	DCX (ENSCPOG00000000654)	SERTM2 (ENSCPOG00000032491)	ALG13 (ENSCPOG00000011983)	TRPC5 (ENSCPOG00000013454)	LHFPL1 (ENSCPOG00000001448)	AMOT (ENSCPOG00000004754)	HTR2C (ENSCPOG00000037536)	IL13RA2 (ENSCPOG00000004374)	LRCH2 (ENSCPOG00000037426)	PLS3 (ENSCPOG00000008293)	ENSCPOG00000027061	ENSCPOG00000023623 #22	ENSCPOG00000001828	KLHL13 (ENSCPOG00000011268)	WDR44 (ENSCPOG00000012146)	DOCK11 (ENSCPOG00000005944)	IL13RA1 (ENSCPOG00000011050)	ENSCPOG00000011910	ENSCPOG00000038962	PGRMC1 (ENSCPOG00000012353)	ENSCPOG00000032552	SLC25A43 (ENSCPOG00000032548)	SLC25A5 (ENSCPOG00000009202)	STEEP1 (ENSCPOG00000023467)	ENSCPOG00000011908	NKRF (ENSCPOG00000011912)	SEPTIN6 (ENSCPOG00000040419)
Guinea pig	MODERN SPECIES	6	NDST1 (ENSCPOG00000002897) #7	RPS14 (ENSCPOG00000024408) #8	CD74 (ENSCPOG00000034371) #9	TCOF1 (ENSCPOG00000002741) #10	ARSI (ENSCPOG00000021634) #11	CAMK2A (ENSCPOG00000006638) #12	SLC6A7 (ENSCPOG00000027356) #13	ENSCPOG00000020353 #14	PDGFRB (ENSCPOG00000005994) #15	CSF1R (ENSCPOG00000024309) #16	HMGXB3 (ENSCPOG00000002607) #17	SLC26A2 (ENSCPOG00000001964) #18	PDE6A (ENSCPOG00000001962) #19	PPARGC1B (ENSCPOG00000001958) #20	ARHGEF37 (ENSCPOG00000002907) #21	CSNK1A1 (ENSCPOG00000036829) #22	IL17B (ENSCPOG00000019682) #23	PCYOX1L (ENSCPOG00000024170) #24	GRPEL2 (ENSCPOG00000031461) #25	AFAP1L1 (ENSCPOG00000014925) #26	ABLIM3 (ENSCPOG00000014922) #27	SH3TC2 (ENSCPOG00000014919) #28	ADRB2 (ENSCPOG00000012753) #29	HTR4 (ENSCPOG00000012428) #30	FBXO38 (ENSCPOG00000012424) #31	ENSCPOG00000033815 #33	SPINK7 (ENSCPOG00000027129) #34	ENSCPOG00000008611	ENSCPOG00000032360	SPINK6 (ENSCPOG00000007875)	SPINK14 (ENSCPOG00000021753)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	25	TCOF1 (ENSHGLG00000007903) #10	ARSI (ENSHGLG00000007275) #11	CAMK2A (ENSHGLG00000006526) #12	SLC6A7 (ENSHGLG00000005136) #13	CDX1 (ENSHGLG00000004687) #14	PDGFRB (ENSHGLG00000003797) #15	CSF1R (ENSHGLG00000003579) #16	HMGXB3 (ENSHGLG00000009767) #17	SLC26A2 (ENSHGLG00000008518) #18	PDE6A (ENSHGLG00000006466) #19	ENSHGLG00000037858	PPARGC1B (ENSHGLG00000005967) #20	ENSHGLG00000050938	ARHGEF37 (ENSHGLG00000015980) #21	ENSHGLG00000050787	CSNK1A1 (ENSHGLG00000014074) #22	IL17B (ENSHGLG00000018467) #23	PCYOX1L (ENSHGLG00000018480) #24	GRPEL2 (ENSHGLG00000041395) #25	AFAP1L1 (ENSHGLG00000017322) #26	ABLIM3 (ENSHGLG00000012245) #27	ENSHGLG00000036885 #28	ENSHGLG00000033081 #28	ENSHGLG00000009971	ENSHGLG00000045515 #29	ENSHGLG00000047084	ENSHGLG00000007633 #30	ENSHGLG00000034397	ENSHGLG00000010512 #31	ENSHGLG00000034903 #34	ENSHGLG00000034840
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000016470	ENSHGLG00000034088	ENSHGLG00000016565	ENSHGLG00000016609	ENSHGLG00000014981	ENSHGLG00000020552	GPN1 (ENSHGLG00000037565)	SUPT7L (ENSHGLG00000005764)	ENSHGLG00000006239	ENSHGLG00000008938	ENSHGLG00000000452	RBKS (ENSHGLG00000005560)	ENSHGLG00000036737	BABAM2 (ENSHGLG00000005691)	ENSHGLG00000008460 #22	ENSHGLG00000034177 #22	FOSL2 (ENSHGLG00000046142)	PLB1 (ENSHGLG00000013913)	PPP1CB (ENSHGLG00000013887)	SPDYA (ENSHGLG00000014672)	TRMT61B (ENSHGLG00000006295)	WDR43 (ENSHGLG00000006912)	ENSHGLG00000009603	PCARE (ENSHGLG00000018422)	CLIP4 (ENSHGLG00000005891)	ENSHGLG00000013620	ALK (ENSHGLG00000009536)	YPEL5 (ENSHGLG00000047773)	ENSHGLG00000047172	ENSHGLG00000035440	LCLAT1 (ENSHGLG00000044937)
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000010370	ENSHGLG00000016470	ENSHGLG00000034088	ENSHGLG00000016565	ENSHGLG00000016609	ENSHGLG00000014981	ENSHGLG00000020552	GPN1 (ENSHGLG00000037565)	SUPT7L (ENSHGLG00000005764)	ENSHGLG00000006239	ENSHGLG00000008938	ENSHGLG00000000452	RBKS (ENSHGLG00000005560)	ENSHGLG00000036737	BABAM2 (ENSHGLG00000005691)	ENSHGLG00000008460 #22	ENSHGLG00000034177 #22	FOSL2 (ENSHGLG00000046142)	PLB1 (ENSHGLG00000013913)	PPP1CB (ENSHGLG00000013887)	SPDYA (ENSHGLG00000014672)	TRMT61B (ENSHGLG00000006295)	WDR43 (ENSHGLG00000006912)	ENSHGLG00000009603	PCARE (ENSHGLG00000018422)	CLIP4 (ENSHGLG00000005891)	ENSHGLG00000013620	ALK (ENSHGLG00000009536)	YPEL5 (ENSHGLG00000047773)	ENSHGLG00000047172	ENSHGLG00000035440
Sciuridae	DUPLICATION
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153700.x.a #22
Eurasian red squirrel	MODERN SPECIES	14	PCM1 (ENSSVLG00005012514)	FGL1 (ENSSVLG00005012858)	MTUS1 (ENSSVLG00005013236)	PDGFRL (ENSSVLG00005013434)	SLC7A2 (ENSSVLG00005013518)	ENSSVLG00005013619	ENSSVLG00005013659	ENSSVLG00005013771	ENSSVLG00005013867	MTMR7 (ENSSVLG00005014009)	VPS37A (ENSSVLG00005014307)	ENSSVLG00005014424	ZDHHC2 (ENSSVLG00005014551)	MICU3 (ENSSVLG00005014601)	FGF20 (ENSSVLG00005014665)	ENSSVLG00005014729 #22	ENSSVLG00005014846	MSR1 (ENSSVLG00005014910)	TUSC3 (ENSSVLG00005015226)	SGCZ (ENSSVLG00005015400)	ENSSVLG00005015567	C8orf48 (ENSSVLG00005015667)	DLC1 (ENSSVLG00005015801)	TRMT9B (ENSSVLG00005016068)	ENSSVLG00005016107	LONRF1 (ENSSVLG00005016151)	PRAG1 (ENSSVLG00005016218)	CLDN23 (ENSSVLG00005016252)	MFHAS1 (ENSSVLG00005016271)	ERI1 (ENSSVLG00005016316)	PPP1R3B (ENSSVLG00005016330)
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES	18	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.x.b.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00900000141664	ENSGT00530000064225
Marmotini	ANCESTRAL SPECIES	23	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.x.b.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00900000141664	ENSGT00530000064225
Alpin marmot	MODERN SPECIES		ARSI (ENSMMMG00000019539) #11	CAMK2A (ENSMMMG00000019478) #12	SLC6A7 (ENSMMMG00000019461) #13	ENSMMMG00000019448 #14	PDGFRB (ENSMMMG00000019362) #15	ENSMMMG00000019359	ENSMMMG00000019351	CSF1R (ENSMMMG00000019339) #16	HMGXB3 (ENSMMMG00000019323) #17	TIGD6 (ENSMMMG00000019320)	SLC26A2 (ENSMMMG00000019313) #18	ENSMMMG00000019311	PDE6A (ENSMMMG00000019293) #19	PPARGC1B (ENSMMMG00000019280) #20	ARHGEF37 (ENSMMMG00000019234) #21	ENSMMMG00000019199 #22	ENSMMMG00000019193	IL17B (ENSMMMG00000019186) #23	PCYOX1L (ENSMMMG00000019178) #24	GRPEL2 (ENSMMMG00000019143) #25	AFAP1L1 (ENSMMMG00000019132) #26	ABLIM3 (ENSMMMG00000019099) #27	SH3TC2 (ENSMMMG00000019086) #28	ADRB2 (ENSMMMG00000019082) #29	HTR4 (ENSMMMG00000019045) #30	FBXO38 (ENSMMMG00000018990) #31	ENSMMMG00000018983 #33	SPINK7 (ENSMMMG00000018980) #34	SPINK13 (ENSMMMG00000018976) #35	MARCOL (ENSMMMG00000018975)	SPINK6 (ENSMMMG00000018915)
Marmotini_b	ANCESTRAL SPECIES	16	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.x.b.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00900000141664	ENSGT00530000064225
Arctic ground squirrel	MODERN SPECIES	29									CSF1R (ENSUPAG00010013615) #16	HMGXB3 (ENSUPAG00010013558) #17	TIGD6 (ENSUPAG00010013551)	SLC26A2 (ENSUPAG00010013538) #18	PDE6A (ENSUPAG00010013495) #19	PPARGC1B (ENSUPAG00010013478) #20	ARHGEF37 (ENSUPAG00010013464) #21	ENSUPAG00010013391 #22	IL17B (ENSUPAG00010013375) #23	PCYOX1L (ENSUPAG00010013355) #24	GRPEL2 (ENSUPAG00010013353) #25	AFAP1L1 (ENSUPAG00010013342) #26	ABLIM3 (ENSUPAG00010013211) #27	SH3TC2 (ENSUPAG00010013173) #28	ADRB2 (ENSUPAG00010013166) #29	HTR4 (ENSUPAG00010013156) #30	FBXO38 (ENSUPAG00010013108) #31	ENSUPAG00010013087 #33	SPINK7 (ENSUPAG00010013075) #34	SPINK13 (ENSUPAG00010013067) #35	ENSUPAG00010013059	MARCOL (ENSUPAG00010013054)	ENSUPAG00010013049
Squirrel	MODERN SPECIES	104	RPS14 (ENSSTOG00000026574) #8	CD74 (ENSSTOG00000009017) #9	TCOF1 (ENSSTOG00000008957) #10	ARSI (ENSSTOG00000026168) #11	CAMK2A (ENSSTOG00000008932) #12	SLC6A7 (ENSSTOG00000007042) #13	CDX1 (ENSSTOG00000020585) #14	PDGFRB (ENSSTOG00000025211) #15	CSF1R (ENSSTOG00000026851) #16	HMGXB3 (ENSSTOG00000008763) #17	TIGD6 (ENSSTOG00000008758)	SLC26A2 (ENSSTOG00000006553) #18	PDE6A (ENSSTOG00000008725) #19	PPARGC1B (ENSSTOG00000024758) #20	ARHGEF37 (ENSSTOG00000008681) #21	ENSSTOG00000022141 #22	IL17B (ENSSTOG00000015142) #23	PCYOX1L (ENSSTOG00000015137) #24	GRPEL2 (ENSSTOG00000015128) #25	AFAP1L1 (ENSSTOG00000015118) #26	ABLIM3 (ENSSTOG00000015100) #27	SH3TC2 (ENSSTOG00000015087) #28	ENSSTOG00000023821	ADRB2 (ENSSTOG00000010102) #29	HTR4 (ENSSTOG00000007489) #30	FBXO38 (ENSSTOG00000009088) #31	SPINK7 (ENSSTOG00000033073) #34	SPINK13 (ENSSTOG00000032408) #35	ENSSTOG00000033221	ENSSTOG00000034457	SPINK6 (ENSSTOG00000011797)
Eurasian red squirrel	MODERN SPECIES	15	ENSSVLG00005006912 #8	CD74 (ENSSVLG00005006927) #9	TCOF1 (ENSSVLG00005006969) #10	ARSI (ENSSVLG00005007002) #11	CAMK2A (ENSSVLG00005007155) #12	SLC6A7 (ENSSVLG00005007630) #13	CDX1 (ENSSVLG00005007785) #14	PDGFRB (ENSSVLG00005007828) #15	CSF1R (ENSSVLG00005007891) #16	HMGXB3 (ENSSVLG00005008069) #17	ENSSVLG00005008152 #18	ENSSVLG00005008227 #18	PDE6A (ENSSVLG00005008299) #19	PPARGC1B (ENSSVLG00005008537) #20	ARHGEF37 (ENSSVLG00005008585) #21	CSNK1A1 (ENSSVLG00005008669) #22	IL17B (ENSSVLG00005008753) #23	PCYOX1L (ENSSVLG00005008779) #24	GRPEL2 (ENSSVLG00005008810) #25	AFAP1L1 (ENSSVLG00005008886) #26	ABLIM3 (ENSSVLG00005008990) #27	SH3TC2 (ENSSVLG00005009091) #28	ADRB2 (ENSSVLG00005009293) #29	HTR4 (ENSSVLG00005009342) #30	FBXO38 (ENSSVLG00005009534) #31	SPINK9 (ENSSVLG00005009630)	SPINK7 (ENSSVLG00005009662) #34	SPINK13 (ENSSVLG00005009725) #35	ENSSVLG00005009773	MARCOL (ENSSVLG00005009798)	ENSSVLG00005009828
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153700.x.b.b #22
Marmotini	ANCESTRAL SPECIES	30	ENSGT00390000006641	ENSGT00940000160647	ENSGT00950000183026.A.a.a	ENSGT00390000017153.a	ENSGT00940000160440	ENSGT00940000162672.d.a.a.b	ENSGT00940000162672.d.a.a.a	ENSGT00940000162672.d.a.b.a	ENSGT00940000162672.d.b	ENSGT00940000155777	ENSGT00950000183012.B.b	ENSGT00390000000080.a.a.x.a	ENSGT00940000153716.B	ENSGT00950000183079.A.b.c.a	ENSGT00940000158380	ENSGT00940000153700.x.b.b #22	ENSGT00950000183074.B.a.b	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00390000008508	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000156221.j	ENSGT00940000160373	ENSGT00440000033329.a.a.b	ENSGT00940000157066	ENSGT00390000006975	ENSGT00940000162544	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475	ENSGT00940000156161.B
Alpin marmot	MODERN SPECIES	17	ENSMMMG00000009769	FGL1 (ENSMMMG00000009754)	MTUS1 (ENSMMMG00000009553)	PDGFRL (ENSMMMG00000009536)	SLC7A2 (ENSMMMG00000009400)	ENSMMMG00000009353	ENSMMMG00000009334	ENSMMMG00000009320	ENSMMMG00000009315	MTMR7 (ENSMMMG00000009245)	VPS37A (ENSMMMG00000009218)	ENSMMMG00000009154	ZDHHC2 (ENSMMMG00000009102)	MICU3 (ENSMMMG00000009074)	FGF20 (ENSMMMG00000009055)	ENSMMMG00000009047 #22	ENSMMMG00000009020	ENSMMMG00000009016	MSR1 (ENSMMMG00000008990)	TUSC3 (ENSMMMG00000008973)	SGCZ (ENSMMMG00000008952)	C8orf48 (ENSMMMG00000008940)	DLC1 (ENSMMMG00000008807)	ENSMMMG00000008788	TRMT9B (ENSMMMG00000008772)	ENSMMMG00000008748	ENSMMMG00000008741	ENSMMMG00000008734	PRAG1 (ENSMMMG00000008722)	CLDN23 (ENSMMMG00000008712)	ERI1 (ENSMMMG00000008694)
Marmotini_b	ANCESTRAL SPECIES	72	ENSGT00940000160647	ENSGT00950000183026.A.a.a	ENSGT00390000017153.a	ENSGT00940000160440	ENSGT00940000162672.d.a.b.b	ENSGT00940000162672.d.a.a.b	ENSGT00940000162672.d.a.a.a	ENSGT00940000162672.d.a.b.a	ENSGT00940000162672.d.b	ENSGT00940000155777	ENSGT00950000183012.B.b	ENSGT00390000000080.a.a.x.a	ENSGT00940000153716.B	ENSGT00950000183079.A.b.c.a	ENSGT00940000158380	ENSGT00940000153700.x.b.b #22	ENSGT00950000183074.B.a.b	ENSGT00390000012030.b.b	ENSGT00940000157146.b	ENSGT00950000183061.a.a.a.a.a.a.b	ENSGT00940000156221.j	ENSGT00940000160373	ENSGT00440000033329.a.a.b	ENSGT00940000157066	ENSGT00390000006975	ENSGT00940000162544	ENSGT00940000158928	ENSGT00530000063205.B	ENSGT00940000159475	ENSGT00940000156161.B	ENSGT00940000159066
Arctic ground squirrel	MODERN SPECIES	68	FGL1 (ENSUPAG00010008560)	MTUS1 (ENSUPAG00010008585)	PDGFRL (ENSUPAG00010008748)	SLC7A2 (ENSUPAG00010008755)	ENSUPAG00010008837	ENSUPAG00010008852	ENSUPAG00010008875	ENSUPAG00010008895	ENSUPAG00010008907	MTMR7 (ENSUPAG00010008925)	VPS37A (ENSUPAG00010008986)	CNOT7 (ENSUPAG00010009004)	ZDHHC2 (ENSUPAG00010009097)	MICU3 (ENSUPAG00010009122)	FGF20 (ENSUPAG00010009172)	ENSUPAG00010009189 #22	MSR1 (ENSUPAG00010009214)	TUSC3 (ENSUPAG00010009240)
Squirrel	MODERN SPECIES	173										MTMR7 (ENSSTOG00000009195)	VPS37A (ENSSTOG00000009186)	ENSSTOG00000009175	ZDHHC2 (ENSSTOG00000009161)	MICU3 (ENSSTOG00000009138)	FGF20 (ENSSTOG00000000226)	ENSSTOG00000002935 #22	ENSSTOG00000025442	MSR1 (ENSSTOG00000004047)	ENSSTOG00000013201	TUSC3 (ENSSTOG00000010933)	ENSSTOG00000027515	SGCZ (ENSSTOG00000011832)	DLC1 (ENSSTOG00000005190)	ENSSTOG00000005186	LONRF1 (ENSSTOG00000027993)	PRAG1 (ENSSTOG00000009332)	CLDN23 (ENSSTOG00000024838)	ENSSTOG00000032161	ENSSTOG00000009553	ENSSTOG00000033433	PPP1R3B (ENSSTOG00000012984)
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153700.y #22
Eurasian red squirrel	MODERN SPECIES	3	THNSL1 (ENSSVLG00005014444)	ENKUR (ENSSVLG00005014473)	PRTFDC1 (ENSSVLG00005014583)	ENSSVLG00005014651	ARHGAP21 (ENSSVLG00005014772)	KIAA1217 (ENSSVLG00005015769)	OTUD1 (ENSSVLG00005016919)	ENSSVLG00005017420	PTF1A (ENSSVLG00005017462)	MSRB2 (ENSSVLG00005017505)	ARMC3 (ENSSVLG00005017564)	PIP4K2A (ENSSVLG00005018202)	SPAG6 (ENSSVLG00005018268)	ENSSVLG00005018484	COMMD3 (ENSSVLG00005018569)	ENSSVLG00005013284 #22	DNAJC1 (ENSSVLG00005013420)	MLLT10 (ENSSVLG00005013802)	SKIDA1 (ENSSVLG00005014278)	ENSSVLG00005014330	ENSSVLG00005014360	NEBL (ENSSVLG00005014393)	ENSSVLG00005014900	PLXDC2 (ENSSVLG00005014950)	MALRD1 (ENSSVLG00005015064)	ENSSVLG00005015431	ARL5B (ENSSVLG00005015443)	NSUN6 (ENSSVLG00005015513)	CACNB2 (ENSSVLG00005016044)	ENSSVLG00005017976	SLC39A12 (ENSSVLG00005018060)
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000153700.y #22
Alpin marmot	MODERN SPECIES	16	CPNE3 (ENSMMMG00000006607)	RMDN1 (ENSMMMG00000006584)	WWP1 (ENSMMMG00000006530)	SLC7A13 (ENSMMMG00000006508)	ATP6V0D2 (ENSMMMG00000006485)	PSKH2 (ENSMMMG00000006459)	CA2 (ENSMMMG00000006447)	CA3 (ENSMMMG00000006418)	CA1 (ENSMMMG00000006395)	CA13 (ENSMMMG00000006375)	RBIS (ENSMMMG00000006364)	ENSMMMG00000006357	LRRCC1 (ENSMMMG00000006309)	RALYL (ENSMMMG00000006166)	ENSMMMG00000006130	ENSMMMG00000006124 #22	SNX16 (ENSMMMG00000006095)	CHMP4C (ENSMMMG00000006062)	ZFAND1 (ENSMMMG00000006054)	SLC10A5 (ENSMMMG00000006050)	IMPA1 (ENSMMMG00000006037)	FABP12 (ENSMMMG00000005993)	FABP4 (ENSMMMG00000005987)	FABP9 (ENSMMMG00000005971)	PMP2 (ENSMMMG00000005937)	ENSMMMG00000005936	PAG1 (ENSMMMG00000005917)	ZNF704 (ENSMMMG00000005881)	ZBTB10 (ENSMMMG00000005863)	TPD52 (ENSMMMG00000005797)	MRPS28 (ENSMMMG00000005791)
Lagomorpha	DUPLICATION
Lagomorpha	DUPLICATION
Lagomorpha	DUPLICATION
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000153700.z.a.a #22
Rabbit	MODERN SPECIES	1401	SLC9A7 (ENSOCUG00000004230)	CHST7 (ENSOCUG00000004224)	ENSOCUG00000022444	ENSOCUG00000023405	ENSOCUG00000017464	DIPK2B (ENSOCUG00000014763)	KDM6A (ENSOCUG00000014741)	DUSP21 (ENSOCUG00000009969)	ENSOCUG00000029753	ENSOCUG00000027904	EFHC2 (ENSOCUG00000010292)	NDP (ENSOCUG00000021324)	MAOB (ENSOCUG00000001436)	MAOA (ENSOCUG00000001429)	ENSOCUG00000012846	ENSOCUG00000025629 #22	ENSOCUG00000030365	GPR82 (ENSOCUG00000003218)	GPR34 (ENSOCUG00000003220)	CASK (ENSOCUG00000004864)	NYX (ENSOCUG00000004856)	DDX3X (ENSOCUG00000012338)	USP9X (ENSOCUG00000007198)	MED14 (ENSOCUG00000015286)	CXorf38 (ENSOCUG00000015277)	MPC1L (ENSOCUG00000015273)	ATP6AP2 (ENSOCUG00000015259)	BCOR (ENSOCUG00000017052)	MID1IP1 (ENSOCUG00000002707)	TSPAN7 (ENSOCUG00000008424)	OTC (ENSOCUG00000010532)
Pika	MODERN SPECIES	8381																ENSOPRG00000006098 #22
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000153700.z.a.b #22
Pika	MODERN SPECIES	8303																ENSOPRG00000013853 #22
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000153700.z.b #22
Rabbit	MODERN SPECIES	433	ENSOCUG00000033447	ENSOCUG00000030193	F9 (ENSOCUG00000005240)	MCF2 (ENSOCUG00000027534)	ATP11C (ENSOCUG00000013087)	ENSOCUG00000022633	ENSOCUG00000012140	ENSOCUG00000025136	SOX3 (ENSOCUG00000016779)	ENSOCUG00000025072	ENSOCUG00000036101	ENSOCUG00000024673	LDOC1 (ENSOCUG00000023824)	ENSOCUG00000023139	SLITRK4 (ENSOCUG00000009653)	ENSOCUG00000021561 #22	ENSOCUG00000036604	SLITRK2 (ENSOCUG00000002285)	ENSOCUG00000024125	ENSOCUG00000039152	ENSOCUG00000038207	FMR1 (ENSOCUG00000014621)	ENSOCUG00000029389	AFF2 (ENSOCUG00000013873)	ENSOCUG00000029180	IDS (ENSOCUG00000012026)	ENSOCUG00000006623	ENSOCUG00000025707	ENSOCUG00000024590	ENSOCUG00000012113	ENSOCUG00000007734
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.`b #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225
Pika	DUPLICATION
Pika	MODERN SPECIES	9620																ENSOPRG00000015896 #22
Pika	MODERN SPECIES	9684																ENSOPRG00000005207 #22
Pika	MODERN SPECIES	339																ENSOPRG00000001373 #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	14	ENSOCUG00000011509 #8	CD74 (ENSOCUG00000003863) #9	TCOF1 (ENSOCUG00000003848) #10	ARSI (ENSOCUG00000025005) #11	CAMK2A (ENSOCUG00000017865) #12	SLC6A7 (ENSOCUG00000006404) #13	CDX1 (ENSOCUG00000012479) #14	PDGFRB (ENSOCUG00000001725) #15	CSF1R (ENSOCUG00000021056) #16	HMGXB3 (ENSOCUG00000007500) #17	SLC26A2 (ENSOCUG00000013871) #18	PDE6A (ENSOCUG00000013850) #19	PPARGC1B (ENSOCUG00000013833) #20	ARHGEF37 (ENSOCUG00000006829) #21	ENSOCUG00000036543	CSNK1A1 (ENSOCUG00000006669) #22	IL17B (ENSOCUG00000016145) #23	PCYOX1L (ENSOCUG00000008337) #24	ENSOCUG00000016138 #25	AFAP1L1 (ENSOCUG00000016114) #26	ABLIM3 (ENSOCUG00000016093) #27	SH3TC2 (ENSOCUG00000025096) #28	ADRB2 (ENSOCUG00000016088) #29	HTR4 (ENSOCUG00000017309) #30	FBXO38 (ENSOCUG00000017291) #31	SPINK9 (ENSOCUG00000029351)	SPINK7 (ENSOCUG00000037791) #34	SPINK13 (ENSOCUG00000024941) #35	ENSOCUG00000029696	ENSOCUG00000031087	ENSOCUG00000033590
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	4	ENSOCUG00000006798	ENSOCUG00000026738	OR6K6 (ENSOCUG00000017697)	OR6N1 (ENSOCUG00000017695)	OR6N2 (ENSOCUG00000010597)	ENSOCUG00000033250	ENSOCUG00000036381	MNDA (ENSOCUG00000024795)	CADM3 (ENSOCUG00000016385)	ENSOCUG00000031386	FCER1A (ENSOCUG00000022947)	OR10J3 (ENSOCUG00000015476)	ENSOCUG00000033994	OR10J4 (ENSOCUG00000021643)	OR10J1 (ENSOCUG00000000350)	ENSOCUG00000021322 #22	OR10J5 (ENSOCUG00000011962)	APCS (ENSOCUG00000014365)	CRP (ENSOCUG00000004702)	DUSP23 (ENSOCUG00000015831)	ENSOCUG00000021578	SLAMF8 (ENSOCUG00000002338)	VSIG8 (ENSOCUG00000002342)	CFAP45 (ENSOCUG00000002349)	TAGLN2 (ENSOCUG00000022296)	IGSF9 (ENSOCUG00000002356)	SLAMF9 (ENSOCUG00000002366)	ENSOCUG00000027503	PIGM (ENSOCUG00000015291)	KCNJ10 (ENSOCUG00000011928)	KCNJ9 (ENSOCUG00000038517)
Rabbit	MODERN SPECIES	20	ENSOCUG00000024105	LDLRAD4 (ENSOCUG00000005605)	FAM210A (ENSOCUG00000025221)	RNMT (ENSOCUG00000005610)	MC5R (ENSOCUG00000000725)	MC2R (ENSOCUG00000014502)	ENSOCUG00000027159	ENSOCUG00000035098	ENSOCUG00000034639	ENSOCUG00000036110	ENSOCUG00000022559	ENSOCUG00000027171	ENSOCUG00000030937	ENSOCUG00000025665	ENSOCUG00000002078	ENSOCUG00000021613 #22	ENSOCUG00000039076	ENSOCUG00000021038	ENSOCUG00000008926	ENSOCUG00000010081	ENSOCUG00000022648	ZSCAN16 (ENSOCUG00000039537)	ZKSCAN8 (ENSOCUG00000006850)	ORYCUNV1R1530 (ENSOCUG00000038616)	ENSOCUG00000021210	ENSOCUG00000024463	ENSOCUG00000033110	ENSOCUG00000030000	CNTN3 (ENSOCUG00000013181)	PDZRN3 (ENSOCUG00000007731)	PPP4R2 (ENSOCUG00000006235)
Rabbit	MODERN SPECIES	11	IRF2 (ENSOCUG00000009229)	ENPP6 (ENSOCUG00000011944)	STOX2 (ENSOCUG00000009718)	TRAPPC11 (ENSOCUG00000010179)	RWDD4 (ENSOCUG00000025497)	ING2 (ENSOCUG00000011812)	CDKN2AIP (ENSOCUG00000005491)	ENSOCUG00000033632	ENSOCUG00000034698	WWC2 (ENSOCUG00000016984)	DCTD (ENSOCUG00000004708)	TENM3 (ENSOCUG00000007616)	ENSOCUG00000028118	ENSOCUG00000022735	AGA (ENSOCUG00000002031)	ENSOCUG00000022964 #22	NEIL3 (ENSOCUG00000001040)	ENSOCUG00000023661	VEGFC (ENSOCUG00000017884)	ENSOCUG00000012211	ENSOCUG00000029741	ASB5 (ENSOCUG00000012592)	SPATA4 (ENSOCUG00000013569)	WDR17 (ENSOCUG00000015110)	GPM6A (ENSOCUG00000007631)	ENSOCUG00000037142	ENSOCUG00000007714	ENSOCUG00000013889	GLRA3 (ENSOCUG00000017638)	HPGD (ENSOCUG00000016289)	ENSOCUG00000026425
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	522															ARHGEF37 (ENSTBEG00000001425) #21	CSNK1A1 (ENSTBEG00000000740) #22
Tree shrew	MODERN SPECIES	10108																ENSTBEG00000002228 #22
Primates	ANCESTRAL SPECIES	8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	316																ENSOGAG00000030690 #22	ENSOGAG00000034365	ENSOGAG00000027246	AMOT (ENSOGAG00000011561)	LHFPL1 (ENSOGAG00000011559)	RTL4 (ENSOGAG00000032419)	ENSOGAG00000025522	TRPC5 (ENSOGAG00000005962)	ENSOGAG00000007568	ENSOGAG00000031713
Bushbaby	MODERN SPECIES	166	CXorf58 (ENSOGAG00000001963)	APOO (ENSOGAG00000001960)	SAT1 (ENSOGAG00000010447)	ACOT9 (ENSOGAG00000002305)	PRDX4 (ENSOGAG00000011610)	ENSOGAG00000026297	ENSOGAG00000034242	PTCHD1 (ENSOGAG00000016650)	ENSOGAG00000026282	PHEX (ENSOGAG00000010894)	ENSOGAG00000010892	MBTPS2 (ENSOGAG00000011151)	SMPX (ENSOGAG00000015469)	KLHL34 (ENSOGAG00000027270)	CNKSR2 (ENSOGAG00000015464)	ENSOGAG00000032783 #22	RPS6KA3 (ENSOGAG00000008184)	ENSOGAG00000008182	ENSOGAG00000033040	MAP7D2 (ENSOGAG00000008176)	BCLAF3 (ENSOGAG00000008168)	SH3KBP1 (ENSOGAG00000002469)	MAP3K15 (ENSOGAG00000002467)	PDHA1 (ENSOGAG00000002466)	ADGRG2 (ENSOGAG00000011733)	PHKA2 (ENSOGAG00000002436)	PPEF1 (ENSOGAG00000002431)	RS1 (ENSOGAG00000002430)	CDKL5 (ENSOGAG00000002429)	ENSOGAG00000031862	SCML2 (ENSOGAG00000012455)
Bushbaby	MODERN SPECIES	118	CD74 (ENSOGAG00000004628) #9	ENSOGAG00000031151	TCOF1 (ENSOGAG00000004619) #10	ARSI (ENSOGAG00000004618) #11	ENSOGAG00000004613	ENSOGAG00000024303	SLC6A7 (ENSOGAG00000004607) #13	CDX1 (ENSOGAG00000025120) #14	PDGFRB (ENSOGAG00000004602) #15	CSF1R (ENSOGAG00000004598) #16	HMGXB3 (ENSOGAG00000004593) #17	SLC26A2 (ENSOGAG00000015997) #18	PDE6A (ENSOGAG00000015989) #19	PPARGC1B (ENSOGAG00000015983) #20	ARHGEF37 (ENSOGAG00000003254) #21	ENSOGAG00000003253 #22	IL17B (ENSOGAG00000014331) #23	PCYOX1L (ENSOGAG00000014328) #24	GRPEL2 (ENSOGAG00000014326) #25	AFAP1L1 (ENSOGAG00000014322) #26	ABLIM3 (ENSOGAG00000014316) #27	SH3TC2 (ENSOGAG00000013586) #28	ADRB2 (ENSOGAG00000012705) #29	FBXO38 (ENSOGAG00000001396) #31	HTR4 (ENSOGAG00000001398) #30	SPINK7 (ENSOGAG00000001393) #34	SPINK5 (ENSOGAG00000013274)	C5orf46 (ENSOGAG00000016090)	SCGB3A2 (ENSOGAG00000002793)	JAKMIP2 (ENSOGAG00000007164)	ENSOGAG00000034689
Lemuriformes	ANCESTRAL SPECIES	21	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Mouse lemur	MODERN SPECIES	15	RPS14 (ENSMICG00000027116) #8	CD74 (ENSMICG00000002890) #9	TCOF1 (ENSMICG00000002858) #10	ARSI (ENSMICG00000002855) #11	CAMK2A (ENSMICG00000002837) #12	SLC6A7 (ENSMICG00000002824) #13	CDX1 (ENSMICG00000033499) #14	PDGFRB (ENSMICG00000002797) #15	CSF1R (ENSMICG00000002770) #16	HMGXB3 (ENSMICG00000002740) #17	SLC26A2 (ENSMICG00000028691) #18	PDE6A (ENSMICG00000002710) #19	PPARGC1B (ENSMICG00000002702) #20	ARHGEF37 (ENSMICG00000002691) #21	ENSMICG00000027812	CSNK1A1 (ENSMICG00000027056) #22	IL17B (ENSMICG00000002611) #23	PCYOX1L (ENSMICG00000028126) #24	GRPEL2 (ENSMICG00000042083) #25	AFAP1L1 (ENSMICG00000002598) #26	ABLIM3 (ENSMICG00000002582) #27	SH3TC2 (ENSMICG00000002571) #28	ADRB2 (ENSMICG00000002569) #29	HTR4 (ENSMICG00000002566) #30	FBXO38 (ENSMICG00000002556) #31	SPINK9 (ENSMICG00000046265)	SPINK7 (ENSMICG00000002552) #34	ENSMICG00000030041	ENSMICG00000046828	ZNF300 (ENSMICG00000037632)	GPX3 (ENSMICG00000000660)
Lemuriformes_a	ANCESTRAL SPECIES	13	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	50	CD74 (ENSPSMG00000023546) #9	TCOF1 (ENSPSMG00000023681) #10	ARSI (ENSPSMG00000023785) #11	ENSPSMG00000023853	SLC6A7 (ENSPSMG00000023895) #13	CDX1 (ENSPSMG00000023900) #14	PDGFRB (ENSPSMG00000023975) #15	CSF1R (ENSPSMG00000024029) #16	HMGXB3 (ENSPSMG00000024071) #17	TIGD6 (ENSPSMG00000024090)	SLC26A2 (ENSPSMG00000024091) #18	PDE6A (ENSPSMG00000024104) #19	ENSPSMG00000024111	PPARGC1B (ENSPSMG00000024131) #20	ARHGEF37 (ENSPSMG00000024142) #21	CSNK1A1 (ENSPSMG00000024208) #22	ENSPSMG00000024239	IL17B (ENSPSMG00000024251) #23	PCYOX1L (ENSPSMG00000024261) #24	GRPEL2 (ENSPSMG00000024280) #25	AFAP1L1 (ENSPSMG00000024305) #26	ABLIM3 (ENSPSMG00000024414) #27	SH3TC2 (ENSPSMG00000024445) #28	ADRB2 (ENSPSMG00000024452) #29	HTR4 (ENSPSMG00000024509) #30	FBXO38 (ENSPSMG00000024539) #31	SPINK9 (ENSPSMG00000024545)	SPINK7 (ENSPSMG00000024547) #34	SPINK13 (ENSPSMG00000024551) #35
Greater bamboo lemur	MODERN SPECIES	612												UFM1 (ENSPSMG00000021274)	ENSPSMG00000021278	TRPC4 (ENSPSMG00000021381)	POSTN (ENSPSMG00000021536)	ENSPSMG00000021564 #22	SUPT20H (ENSPSMG00000021654)	EXOSC8 (ENSPSMG00000021716)	ALG5 (ENSPSMG00000021766)	SMAD9 (ENSPSMG00000021821)	RFXAP (ENSPSMG00000021869)	SERTM1 (ENSPSMG00000021873)	CCNA1 (ENSPSMG00000021881)	SPART (ENSPSMG00000021898)	CCDC169 (ENSPSMG00000021912)	SOHLH2 (ENSPSMG00000021921)	DCLK1 (ENSPSMG00000021995)
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	807																ENSPCOG00000016343 #22
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	738	RPS14 (ENSPCOG00000020077) #8	CD74 (ENSPCOG00000016171) #9	TCOF1 (ENSPCOG00000017379) #10	ARSI (ENSPCOG00000006855) #11	ENSPCOG00000024805	SLC6A7 (ENSPCOG00000019876) #13	CDX1 (ENSPCOG00000018558) #14	PDGFRB (ENSPCOG00000028113) #15	CSF1R (ENSPCOG00000025616) #16	HMGXB3 (ENSPCOG00000023148) #17	SLC26A2 (ENSPCOG00000021285) #18	PDE6A (ENSPCOG00000028318) #19	PPARGC1B (ENSPCOG00000024059) #20	ARHGEF37 (ENSPCOG00000018318) #21	ENSPCOG00000017255 #22	ENSPCOG00000027113 #22	IL17B (ENSPCOG00000018305) #23	PCYOX1L (ENSPCOG00000027029) #24	GRPEL2 (ENSPCOG00000027577) #25	AFAP1L1 (ENSPCOG00000020332) #26	ABLIM3 (ENSPCOG00000021938) #27	SH3TC2 (ENSPCOG00000016330) #28	HTR4 (ENSPCOG00000026629) #30	FBXO38 (ENSPCOG00000019795) #31	SPINK7 (ENSPCOG00000017440) #34	MARCOL (ENSPCOG00000015672)	SPINK6 (ENSPCOG00000012126)	SPINK14 (ENSPCOG00000015724)	ENSPCOG00000020885	C5orf46 (ENSPCOG00000005759)	SCGB3A2 (ENSPCOG00000027360)
Coquerels sifaka	MODERN SPECIES	738	NDST1 (ENSPCOG00000021870) #7	RPS14 (ENSPCOG00000020077) #8	CD74 (ENSPCOG00000016171) #9	TCOF1 (ENSPCOG00000017379) #10	ARSI (ENSPCOG00000006855) #11	ENSPCOG00000024805	SLC6A7 (ENSPCOG00000019876) #13	CDX1 (ENSPCOG00000018558) #14	PDGFRB (ENSPCOG00000028113) #15	CSF1R (ENSPCOG00000025616) #16	HMGXB3 (ENSPCOG00000023148) #17	SLC26A2 (ENSPCOG00000021285) #18	PDE6A (ENSPCOG00000028318) #19	PPARGC1B (ENSPCOG00000024059) #20	ARHGEF37 (ENSPCOG00000018318) #21	ENSPCOG00000017255 #22	ENSPCOG00000027113 #22	IL17B (ENSPCOG00000018305) #23	PCYOX1L (ENSPCOG00000027029) #24	GRPEL2 (ENSPCOG00000027577) #25	AFAP1L1 (ENSPCOG00000020332) #26	ABLIM3 (ENSPCOG00000021938) #27	SH3TC2 (ENSPCOG00000016330) #28	HTR4 (ENSPCOG00000026629) #30	FBXO38 (ENSPCOG00000019795) #31	SPINK7 (ENSPCOG00000017440) #34	MARCOL (ENSPCOG00000015672)	SPINK6 (ENSPCOG00000012126)	SPINK14 (ENSPCOG00000015724)	ENSPCOG00000020885	C5orf46 (ENSPCOG00000005759)
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	5354															ARHGEF37 (ENSTSYG00000014227) #21	ENSTSYG00000006239 #22
Tarsier	MODERN SPECIES	4007																ENSTSYG00000029412 #22	ENSTSYG00000013186
Simiiformes	DUPLICATION
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000000703.g.a.a.b ##8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Cebidae	ANCESTRAL SPECIES	6	ENSGT00390000000703.g.a.a.b ##8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Marmoset	MODERN SPECIES	11	TCOF1 (ENSCJAG00000020993) #10	ARSI (ENSCJAG00000047946) #11	CAMK2A (ENSCJAG00000021031) #12	SLC6A7 (ENSCJAG00000021053) #13	CDX1 (ENSCJAG00000021069) #14	ENSCJAG00000080616	PDGFRB (ENSCJAG00000021070) #15	CSF1R (ENSCJAG00000021077) #16	HMGXB3 (ENSCJAG00000021088) #17	SLC26A2 (ENSCJAG00000021099) #18	ENSCJAG00000076698	PDE6A (ENSCJAG00000021102) #19	PPARGC1B (ENSCJAG00000021113) #20	ENSCJAG00000073211	ARHGEF37 (ENSCJAG00000021116) #21	CSNK1A1 (ENSCJAG00000021121) #22	ENSCJAG00000073579	IL17B (ENSCJAG00000021136) #23	PCYOX1L (ENSCJAG00000021137) #24	AFAP1L1 (ENSCJAG00000021140) #26	ENSCJAG00000069995	ABLIM3 (ENSCJAG00000021152) #27	SH3TC2 (ENSCJAG00000021183) #28	ADRB2 (ENSCJAG00000046663) #29	HTR4 (ENSCJAG00000021192) #30	FBXO38 (ENSCJAG00000021201) #31	SPINK9 (ENSCJAG00000021232)	SPINK7 (ENSCJAG00000021238) #34	ENSCJAG00000044950 #35	MARCOL (ENSCJAG00000043278)	SPINK6 (ENSCJAG00000048610)
Cebidae_a	ANCESTRAL SPECIES	83	ENSGT00390000000703.g.a.a.b ##8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Bolivian squirrel monkey	MODERN SPECIES	103	CD74 (ENSSBOG00000024664) #9	TCOF1 (ENSSBOG00000026594) #10	ARSI (ENSSBOG00000025544) #11	CAMK2A (ENSSBOG00000025496) #12	SLC6A7 (ENSSBOG00000018069) #13	ENSSBOG00000030617 #14	PDGFRB (ENSSBOG00000025037) #15	CSF1R (ENSSBOG00000023982) #16	HMGXB3 (ENSSBOG00000020648) #17	TIGD6 (ENSSBOG00000032889)	SLC26A2 (ENSSBOG00000031044) #18	PDE6A (ENSSBOG00000021337) #19	PPARGC1B (ENSSBOG00000028738) #20	ARHGEF37 (ENSSBOG00000028328) #21	ENSSBOG00000026169	CSNK1A1 (ENSSBOG00000025117) #22	IL17B (ENSSBOG00000027325) #23	PCYOX1L (ENSSBOG00000029897) #24	GRPEL2 (ENSSBOG00000030736) #25	AFAP1L1 (ENSSBOG00000031006) #26	ABLIM3 (ENSSBOG00000031658) #27	SH3TC2 (ENSSBOG00000019392) #28	ADRB2 (ENSSBOG00000020834) #29	HTR4 (ENSSBOG00000029448) #30	FBXO38 (ENSSBOG00000029557) #31	SPINK9 (ENSSBOG00000021252)	SPINK7 (ENSSBOG00000034263) #34	MARCOL (ENSSBOG00000032171)	SPINK6 (ENSSBOG00000030299)	SPINK14 (ENSSBOG00000021006)	SPINK5 (ENSSBOG00000021923)
Capuchin	MODERN SPECIES	71	CNNM1 (ENSCCAG00000037324)	ENSCCAG00000020087	ENSCCAG00000023659	CAMK2A (ENSCCAG00000029738) #12	SLC6A7 (ENSCCAG00000033881) #13	CDX1 (ENSCCAG00000029914) #14	PDGFRB (ENSCCAG00000031575) #15	ENSCCAG00000026641	CSF1R (ENSCCAG00000033803) #16	HMGXB3 (ENSCCAG00000023989) #17	ENSCCAG00000030622	SLC26A2 (ENSCCAG00000020161) #18	PDE6A (ENSCCAG00000037978) #19	PPARGC1B (ENSCCAG00000026909) #20	ARHGEF37 (ENSCCAG00000035607) #21	CSNK1A1 (ENSCCAG00000036479) #22	IL17B (ENSCCAG00000037576) #23	PCYOX1L (ENSCCAG00000031959) #24	GRPEL2 (ENSCCAG00000030877) #25	AFAP1L1 (ENSCCAG00000037827) #26	ABLIM3 (ENSCCAG00000033452) #27	SH3TC2 (ENSCCAG00000037468) #28	ADRB2 (ENSCCAG00000027966) #29	HTR4 (ENSCCAG00000033464) #30	FBXO38 (ENSCCAG00000033302) #31	SPINK9 (ENSCCAG00000022106)	SPINK7 (ENSCCAG00000024710) #34	ENSCCAG00000031419	ENSCCAG00000036330	MARCOL (ENSCCAG00000030766)	SPINK6 (ENSCCAG00000026645)
Mas night monkey	MODERN SPECIES	966	CD74 (ENSANAG00000024731) #9	TCOF1 (ENSANAG00000027583) #10	ARSI (ENSANAG00000035477) #11	CAMK2A (ENSANAG00000021986) #12	SLC6A7 (ENSANAG00000021354) #13	CDX1 (ENSANAG00000022954) #14	PDGFRB (ENSANAG00000036549) #15	ENSANAG00000027390	CSF1R (ENSANAG00000028025) #16	HMGXB3 (ENSANAG00000021091) #17	TIGD6 (ENSANAG00000023656)	SLC26A2 (ENSANAG00000024045) #18	PDE6A (ENSANAG00000035251) #19	PPARGC1B (ENSANAG00000021830) #20	ARHGEF37 (ENSANAG00000025504) #21	CSNK1A1 (ENSANAG00000021098) #22	IL17B (ENSANAG00000020790) #23	PCYOX1L (ENSANAG00000020560) #24	GRPEL2 (ENSANAG00000030295) #25	AFAP1L1 (ENSANAG00000024427) #26	ABLIM3 (ENSANAG00000036878) #27	ENSANAG00000026413	SH3TC2 (ENSANAG00000019462) #28	ADRB2 (ENSANAG00000025525) #29	HTR4 (ENSANAG00000016946) #30	FBXO38 (ENSANAG00000025070) #31	SPINK9 (ENSANAG00000017436)	ENSANAG00000037965	SPINK7 (ENSANAG00000024041) #34	SPINK13 (ENSANAG00000024157) #35	MARCOL (ENSANAG00000026951)
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Gibbon	MODERN SPECIES	11	TCOF1 (ENSNLEG00000010310) #10	ENSNLEG00000010308 #11	ENSNLEG00000010278	SLC6A7 (ENSNLEG00000010260) #13	ENSNLEG00000010259 #14	PDGFRB (ENSNLEG00000010243) #15	CSF1R (ENSNLEG00000010225) #16	HMGXB3 (ENSNLEG00000010213) #17	TIGD6 (ENSNLEG00000010212)	ENSNLEG00000028618	SLC26A2 (ENSNLEG00000010209) #18	PDE6A (ENSNLEG00000010198) #19	ENSNLEG00000035864	PPARGC1B (ENSNLEG00000010193) #20	ARHGEF37 (ENSNLEG00000010188) #21	CSNK1A1 (ENSNLEG00000027267) #22	ENSNLEG00000010172	IL17B (ENSNLEG00000035704) #23	PCYOX1L (ENSNLEG00000010166) #24	GRPEL2 (ENSNLEG00000029202) #25	AFAP1L1 (ENSNLEG00000010143) #26	ABLIM3 (ENSNLEG00000010135) #27	SH3TC2 (ENSNLEG00000010121) #28	HTR4 (ENSNLEG00000010112) #30	FBXO38 (ENSNLEG00000010079) #31	ENSNLEG00000010076	SPINK7 (ENSNLEG00000010071) #34	ENSNLEG00000010067 #35	MARCOL (ENSNLEG00000031931)	SPINK6 (ENSNLEG00000010064)	SPINK5 (ENSNLEG00000010008)
Hominidae	ANCESTRAL SPECIES	7	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Orangutan	MODERN SPECIES	18	NDST1 (ENSPPYG00000015951) #7	RPS14 (ENSPPYG00000035071) ##8	CD74 (ENSPPYG00000015949) #9	TCOF1 (ENSPPYG00000015948) #10	ARSI (ENSPPYG00000015947) #11	CAMK2A (ENSPPYG00000015946) #12	SLC6A7 (ENSPPYG00000015945) #13	CDX1 (ENSPPYG00000015944) #14	PDGFRB (ENSPPYG00000015943) #15	CSF1R (ENSPPYG00000015942) #16	HMGXB3 (ENSPPYG00000015941) #17	SLC26A2 (ENSPPYG00000038636) #18	PDE6A (ENSPPYG00000015939) #19	PPARGC1B (ENSPPYG00000015938) #20	ARHGEF37 (ENSPPYG00000015937) #21	CSNK1A1 (ENSPPYG00000015936) #22	ENSPPYG00000036819	IL17B (ENSPPYG00000015935) #23	PCYOX1L (ENSPPYG00000015934) #24	GRPEL2 (ENSPPYG00000015933) #25	AFAP1L1 (ENSPPYG00000015932) #26	ABLIM3 (ENSPPYG00000015931) #27	SH3TC2 (ENSPPYG00000015930) #28	ADRB2 (ENSPPYG00000015929) #29	HTR4 (ENSPPYG00000015928) #30	FBXO38 (ENSPPYG00000015927) #31	ENSPPYG00000015926	SPINK7 (ENSPPYG00000015925) #34	SPINK13 (ENSPPYG00000015924) #35	ENSPPYG00000036659	SPINK6 (ENSPPYG00000015923)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00390000009776.j.a.a	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Gorilla	MODERN SPECIES	18	ARSI (ENSGGOG00000000111) #11	CAMK2A (ENSGGOG00000000108) #12	SLC6A7 (ENSGGOG00000000107) #13	ENSGGOG00000000106	PDGFRB (ENSGGOG00000007244) #15	ENSGGOG00000015098	CSF1R (ENSGGOG00000008936) #16	HMGXB3 (ENSGGOG00000008921) #17	TIGD6 (ENSGGOG00000008920)	ENSGGOG00000041991	SLC26A2 (ENSGGOG00000000528) #18	ENSGGOG00000041643	ENSGGOG00000010699 #19	PPARGC1B (ENSGGOG00000009505) #20	ARHGEF37 (ENSGGOG00000001871) #21	CSNK1A1 (ENSGGOG00000013926) #22	IL17B (ENSGGOG00000005421) #23	PCYOX1L (ENSGGOG00000005413) #24	GRPEL2 (ENSGGOG00000005410) #25	AFAP1L1 (ENSGGOG00000005401) #26	ABLIM3 (ENSGGOG00000005384) #27	SH3TC2 (ENSGGOG00000006958) #28	ADRB2 (ENSGGOG00000005445) #29	HTR4 (ENSGGOG00000016400) #30	FBXO38 (ENSGGOG00000004687) #31	ENSGGOG00000023945	SPINK7 (ENSGGOG00000001299) #34	SPINK13 (ENSGGOG00000025175) #35	MARCOL (ENSGGOG00000041755)	SPINK6 (ENSGGOG00000000159)	SPINK14 (ENSGGOG00000012747)
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00390000009776.j.a.a	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Human	MODERN SPECIES	17	RPS14 (ENSG00000164587) ##8	CD74 (ENSG00000019582) #9	TCOF1 (ENSG00000070814) #10	ARSI (ENSG00000183876) #11	CAMK2A (ENSG00000070808) #12	SLC6A7 (ENSG00000011083) #13	CDX1 (ENSG00000113722) #14	PDGFRB (ENSG00000113721) #15	CSF1R (ENSG00000182578) #16	HMGXB3 (ENSG00000113716) #17	TIGD6 (ENSG00000164296)	SLC26A2 (ENSG00000155850) #18	PDE6A (ENSG00000132915) #19	PPARGC1B (ENSG00000155846) #20	ARHGEF37 (ENSG00000183111) #21	CSNK1A1 (ENSG00000113712) #22	IL17B (ENSG00000127743) #23	PCYOX1L (ENSG00000145882) #24	GRPEL2 (ENSG00000164284) #25	AFAP1L1 (ENSG00000157510) #26	ABLIM3 (ENSG00000173210) #27	SH3TC2 (ENSG00000169247) #28	ADRB2 (ENSG00000169252) #29	HTR4 (ENSG00000164270) #30	FBXO38 (ENSG00000145868) #31	SPINK9 (ENSG00000204909)	SPINK7 (ENSG00000145879) #34	SPINK13 (ENSG00000214510) #35	MARCOL (ENSG00000248109)	SPINK6 (ENSG00000178172)	SPINK14 (ENSG00000196800)
Pan	ANCESTRAL SPECIES	10	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00390000009776.j.a.a	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Bonobo	MODERN SPECIES	18	ARSI (ENSPPAG00000039302) #11	CAMK2A (ENSPPAG00000042225) #12	SLC6A7 (ENSPPAG00000006132) #13	CDX1 (ENSPPAG00000034240) #14	PDGFRB (ENSPPAG00000037485) #15	CSF1R (ENSPPAG00000041729) #16	HMGXB3 (ENSPPAG00000008815) #17	TIGD6 (ENSPPAG00000008619)	ENSPPAG00000012250	SLC26A2 (ENSPPAG00000038310) #18	ENSPPAG00000026689	PDE6A (ENSPPAG00000038123) #19	PPARGC1B (ENSPPAG00000035226) #20	ARHGEF37 (ENSPPAG00000032767) #21	ENSPPAG00000029858	CSNK1A1 (ENSPPAG00000041093) #22	IL17B (ENSPPAG00000034378) #23	PCYOX1L (ENSPPAG00000038525) #24	GRPEL2 (ENSPPAG00000032219) #25	AFAP1L1 (ENSPPAG00000035426) #26	ABLIM3 (ENSPPAG00000029456) #27	SH3TC2 (ENSPPAG00000021974) #28	ADRB2 (ENSPPAG00000036592) #29	HTR4 (ENSPPAG00000040790) #30	FBXO38 (ENSPPAG00000016960) #31	ENSPPAG00000039891	SPINK7 (ENSPPAG00000037231) #34	SPINK13 (ENSPPAG00000026789) #35	SPINK6 (ENSPPAG00000037222)	SPINK14 (ENSPPAG00000043145)	SPINK5 (ENSPPAG00000040944)
Chimpanzee	MODERN SPECIES	18	TCOF1 (ENSPTRG00000017416) #10	ARSI (ENSPTRG00000017415) #11	CAMK2A (ENSPTRG00000017414) #12	SLC6A7 (ENSPTRG00000017413) #13	CDX1 (ENSPTRG00000017411) #14	PDGFRB (ENSPTRG00000044533) #15	CSF1R (ENSPTRG00000017409) #16	HMGXB3 (ENSPTRG00000017408) #17	TIGD6 (ENSPTRG00000049458)	ENSPTRG00000048680	SLC26A2 (ENSPTRG00000043485) #18	ENSPTRG00000051114	PDE6A (ENSPTRG00000017404) #19	PPARGC1B (ENSPTRG00000017403) #20	ARHGEF37 (ENSPTRG00000017402) #21	CSNK1A1 (ENSPTRG00000017401) #22	IL17B (ENSPTRG00000017399) #23	PCYOX1L (ENSPTRG00000017397) #24	GRPEL2 (ENSPTRG00000017396) #25	AFAP1L1 (ENSPTRG00000017394) #26	ABLIM3 (ENSPTRG00000017393) #27	SH3TC2 (ENSPTRG00000017392) #28	ADRB2 (ENSPTRG00000017391) #29	HTR4 (ENSPTRG00000017389) #30	FBXO38 (ENSPTRG00000017388) #31	SPINK9 (ENSPTRG00000028533)	SPINK7 (ENSPTRG00000017387) #34	SPINK13 (ENSPTRG00000034142) #35	MARCOL (ENSPTRG00000051181)	SPINK6 (ENSPTRG00000017386)	SPINK14 (ENSPTRG00000022988)
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Rhinopithecus	ANCESTRAL SPECIES	53	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00910000147883	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330.a #19	ENSGT00940000161330.b #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Black snub-nosed monkey	MODERN SPECIES	531	TCOF1 (ENSRBIG00000032993) #10	ARSI (ENSRBIG00000031647) #11	CAMK2A (ENSRBIG00000040779) #12	SLC6A7 (ENSRBIG00000033408) #13	CDX1 (ENSRBIG00000026089) #14	ENSRBIG00000029648	PDGFRB (ENSRBIG00000031617) #15	CSF1R (ENSRBIG00000031321) #16	HMGXB3 (ENSRBIG00000040563) #17	TIGD6 (ENSRBIG00000023892)	ENSRBIG00000029871	SLC26A2 (ENSRBIG00000016061) #18	PDE6A (ENSRBIG00000038805) #19	PPARGC1B (ENSRBIG00000036724) #20	ARHGEF37 (ENSRBIG00000005435) #21	CSNK1A1 (ENSRBIG00000032845) #22	ENSRBIG00000043370	ENSRBIG00000015114	IL17B (ENSRBIG00000037794) #23	PCYOX1L (ENSRBIG00000035607) #24	GRPEL2 (ENSRBIG00000034866) #25	AFAP1L1 (ENSRBIG00000024173) #26	ABLIM3 (ENSRBIG00000027319) #27	SH3TC2 (ENSRBIG00000032968) #28	ADRB2 (ENSRBIG00000044505) #29	HTR4 (ENSRBIG00000042388) #30	FBXO38 (ENSRBIG00000034304) #31	SPINK9 (ENSRBIG00000033013)	SPINK7 (ENSRBIG00000042503) #34	SPINK13 (ENSRBIG00000034804) #35	MARCOL (ENSRBIG00000044146)
Golden snub-nosed monkey	MODERN SPECIES	2594												ENSRROG00000041184 #19	PPARGC1B (ENSRROG00000029594) #20	ARHGEF37 (ENSRROG00000027184) #21	ENSRROG00000031607	CSNK1A1 (ENSRROG00000032970) #22	ENSRROG00000033814	ENSRROG00000040365	IL17B (ENSRROG00000020909) #23	PCYOX1L (ENSRROG00000045676) #24	GRPEL2 (ENSRROG00000030768) #25	AFAP1L1 (ENSRROG00000035083) #26	ABLIM3 (ENSRROG00000044842) #27	SH3TC2 (ENSRROG00000035976) #28	ADRB2 (ENSRROG00000023775) #29	HTR4 (ENSRROG00000041400) #30	FBXO38 (ENSRROG00000028798) #31
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Vervet Monkey	MODERN SPECIES	15	RPS14 (ENSCSAG00000011534) ##8	CD74 (ENSCSAG00000011542) #9	TCOF1 (ENSCSAG00000011564) #10	ARSI (ENSCSAG00000011574) #11	CAMK2A (ENSCSAG00000011585) #12	SLC6A7 (ENSCSAG00000011636) #13	CDX1 (ENSCSAG00000011659) #14	PDGFRB (ENSCSAG00000011671) #15	CSF1R (ENSCSAG00000011690) #16	HMGXB3 (ENSCSAG00000011700) #17	TIGD6 (ENSCSAG00000019718)	SLC26A2 (ENSCSAG00000011710) #18	PDE6A (ENSCSAG00000011757) #19	PPARGC1B (ENSCSAG00000011792) #20	ARHGEF37 (ENSCSAG00000011804) #21	CSNK1A1 (ENSCSAG00000011814) #22	IL17B (ENSCSAG00000011821) #23	PCYOX1L (ENSCSAG00000011829) #24	ENSCSAG00000011834	AFAP1L1 (ENSCSAG00000011843) #26	ABLIM3 (ENSCSAG00000011859) #27	ENSCSAG00000011867 #28	ADRB2 (ENSCSAG00000019717) #29	HTR4 (ENSCSAG00000011878) #30	FBXO38 (ENSCSAG00000011896) #31	SPINK9 (ENSCSAG00000011905)	SPINK7 (ENSCSAG00000011911) #34	SPINK13 (ENSCSAG00000011916) #35	SPINK6 (ENSCSAG00000011920)	SPINK14 (ENSCSAG00000011930)	SPINK5 (ENSCSAG00000012050)
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225
Macaca	ANCESTRAL SPECIES	7	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Pig-tailed macaque	MODERN SPECIES	383	ARSI (ENSMNEG00000039468) #11	CAMK2A (ENSMNEG00000044336) #12	SLC6A7 (ENSMNEG00000024157) #13	CDX1 (ENSMNEG00000030411) #14	ENSMNEG00000040737	PDGFRB (ENSMNEG00000033412) #15	ENSMNEG00000031925	CSF1R (ENSMNEG00000041139) #16	HMGXB3 (ENSMNEG00000035203) #17	TIGD6 (ENSMNEG00000028353)	ENSMNEG00000045322	SLC26A2 (ENSMNEG00000028522) #18	PDE6A (ENSMNEG00000043885) #19	PPARGC1B (ENSMNEG00000034121) #20	ARHGEF37 (ENSMNEG00000035164) #21	CSNK1A1 (ENSMNEG00000036153) #22	ENSMNEG00000036052	IL17B (ENSMNEG00000003168) #23	PCYOX1L (ENSMNEG00000034433) #24	ENSMNEG00000040561 #25	AFAP1L1 (ENSMNEG00000022071) #26	ABLIM3 (ENSMNEG00000043657) #27	SH3TC2 (ENSMNEG00000018695) #28	ADRB2 (ENSMNEG00000002108) #29	HTR4 (ENSMNEG00000035428) #30	FBXO38 (ENSMNEG00000033470) #31	SPINK9 (ENSMNEG00000034418)	SPINK7 (ENSMNEG00000041021) #34	SPINK13 (ENSMNEG00000028624) #35	MARCOL (ENSMNEG00000033533)	SPINK6 (ENSMNEG00000040646)
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000161627.a.a.a.b.b.b.b.a.a.a.a.a.a.a.b.b.a.a.a.a.b	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00940000164709.a.b.b.a.a.b.b.b.b.a.b.b.c.a.a.b	ENSGT01030000239693	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308
Crab-eating macaque	MODERN SPECIES	16	CD74 (ENSMFAG00000042836) #9	TCOF1 (ENSMFAG00000041830) #10	ENSMFAG00000053308	CAMK2A (ENSMFAG00000004062) #12	SLC6A7 (ENSMFAG00000039840) #13	CDX1 (ENSMFAG00000053823) #14	PDGFRB (ENSMFAG00000001633) #15	CSF1R (ENSMFAG00000034429) #16	HMGXB3 (ENSMFAG00000041979) #17	TIGD6 (ENSMFAG00000028440)	SLC26A2 (ENSMFAG00000042946) #18	PDE6A (ENSMFAG00000039234) #19	PPARGC1B (ENSMFAG00000042269) #20	ARHGEF37 (ENSMFAG00000040761) #21	ENSMFAG00000062100	CSNK1A1 (ENSMFAG00000030995) #22	ENSMFAG00000054852	ENSMFAG00000063962	IL17B (ENSMFAG00000030082) #23	PCYOX1L (ENSMFAG00000039773) #24	GRPEL2 (ENSMFAG00000044538) #25	AFAP1L1 (ENSMFAG00000044334) #26	SH3TC2 (ENSMFAG00000001106) #28	ADRB2 (ENSMFAG00000021322) #29	HTR4 (ENSMFAG00000043212) #30	FBXO38 (ENSMFAG00000045852) #31	SPINK9 (ENSMFAG00000044805)	SPINK7 (ENSMFAG00000053265) #34	ENSMFAG00000001756 #35	ENSMFAG00000059456	ENSMFAG00000038680
Rhesus	MODERN SPECIES	16	TCOF1 (ENSMMUG00000009111) #10	ENSMMUG00000052015	ARSI (ENSMMUG00000011565) #11	CAMK2A (ENSMMUG00000011563) #12	SLC6A7 (ENSMMUG00000011559) #13	CDX1 (ENSMMUG00000050352) #14	PDGFRB (ENSMMUG00000011557) #15	CSF1R (ENSMMUG00000011556) #16	HMGXB3 (ENSMMUG00000011554) #17	TIGD6 (ENSMMUG00000011553)	SLC26A2 (ENSMMUG00000029776) #18	PDE6A (ENSMMUG00000004752) #19	PPARGC1B (ENSMMUG00000004749) #20	ARHGEF37 (ENSMMUG00000017714) #21	ENSMMUG00000053973	CSNK1A1 (ENSMMUG00000001758) #22	ENSMMUG00000063983	ENSMMUG00000062594	IL17B (ENSMMUG00000021666) #23	PCYOX1L (ENSMMUG00000021663) #24	GRPEL2 (ENSMMUG00000059111) #25	AFAP1L1 (ENSMMUG00000021660) #26	ABLIM3 (ENSMMUG00000021657) #27	SH3TC2 (ENSMMUG00000019820) #28	ADRB2 (ENSMMUG00000002214) #29	HTR4 (ENSMMUG00000016913) #30	FBXO38 (ENSMMUG00000016908) #31	SPINK9 (ENSMMUG00000029782)	SPINK7 (ENSMMUG00000016907) #34	SPINK13 (ENSMMUG00000061341) #35	ENSMMUG00000050453
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00910000147883	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Olive baboon	MODERN SPECIES	15	RPS14 (ENSPANG00000011660) ##8	TCOF1 (ENSPANG00000021403) #10	ARSI (ENSPANG00000013185) #11	CD74 (ENSPANG00000003593) #9	CAMK2A (ENSPANG00000013259) #12	SLC6A7 (ENSPANG00000006208) #13	CDX1 (ENSPANG00000050127) #14	PDGFRB (ENSPANG00000023735) #15	CSF1R (ENSPANG00000018729) #16	HMGXB3 (ENSPANG00000023318) #17	TIGD6 (ENSPANG00000023729)	SLC26A2 (ENSPANG00000008875) #18	PDE6A (ENSPANG00000019517) #19	PPARGC1B (ENSPANG00000009512) #20	ARHGEF37 (ENSPANG00000013089) #21	CSNK1A1 (ENSPANG00000010406) #22	IL17B (ENSPANG00000010657) #23	PCYOX1L (ENSPANG00000005731) #24	GRPEL2 (ENSPANG00000013468) #25	AFAP1L1 (ENSPANG00000024862) #26	ABLIM3 (ENSPANG00000012205) #27	SH3TC2 (ENSPANG00000012855) #28	ADRB2 (ENSPANG00000025700) #29	HTR4 (ENSPANG00000017118) #30	FBXO38 (ENSPANG00000026422) #31	SPINK9 (ENSPANG00000008614)	SPINK7 (ENSPANG00000012115) #34	SPINK6 (ENSPANG00000007464)	SPINK14 (ENSPANG00000024863)	ENSPANG00000045510	SPINK5 (ENSPANG00000007092)
Cercopithecinae_d	ANCESTRAL SPECIES	90	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00910000147883	ENSGT00940000157138 #15	ENSGT00390000011010.b.mb	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT00860000136176	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kb.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856
Drill	MODERN SPECIES	921	ARSI (ENSMLEG00000039581) #11	CAMK2A (ENSMLEG00000040131) #12	SLC6A7 (ENSMLEG00000040929) #13	ENSMLEG00000036186 #14	ENSMLEG00000027551	PDGFRB (ENSMLEG00000019760) #15	ENSMLEG00000031129	CSF1R (ENSMLEG00000038866) #16	HMGXB3 (ENSMLEG00000043365) #17	TIGD6 (ENSMLEG00000000354)	ENSMLEG00000036295	SLC26A2 (ENSMLEG00000026088) #18	PDE6A (ENSMLEG00000035530) #19	PPARGC1B (ENSMLEG00000040973) #20	ARHGEF37 (ENSMLEG00000008241) #21	CSNK1A1 (ENSMLEG00000032054) #22	IL17B (ENSMLEG00000029463) #23	PCYOX1L (ENSMLEG00000029797) #24	GRPEL2 (ENSMLEG00000027712) #25	AFAP1L1 (ENSMLEG00000036743) #26	ABLIM3 (ENSMLEG00000035568) #27	SH3TC2 (ENSMLEG00000039672) #28	ADRB2 (ENSMLEG00000013549) #29	HTR4 (ENSMLEG00000032925) #30	FBXO38 (ENSMLEG00000043874) #31	SPINK9 (ENSMLEG00000043753)	SPINK7 (ENSMLEG00000011759) #34	SPINK13 (ENSMLEG00000041668) #35
Sooty mangabey	MODERN SPECIES	150	TCOF1 (ENSCATG00000032047) #10	ARSI (ENSCATG00000035397) #11	CAMK2A (ENSCATG00000035164) #12	SLC6A7 (ENSCATG00000034837) #13	CDX1 (ENSCATG00000040987) #14	PDGFRB (ENSCATG00000044827) #15	ENSCATG00000045226	CSF1R (ENSCATG00000007348) #16	HMGXB3 (ENSCATG00000038002) #17	TIGD6 (ENSCATG00000017990)	ENSCATG00000030068	SLC26A2 (ENSCATG00000016803) #18	PDE6A (ENSCATG00000022091) #19	PPARGC1B (ENSCATG00000030402) #20	ARHGEF37 (ENSCATG00000044070) #21	CSNK1A1 (ENSCATG00000034093) #22	IL17B (ENSCATG00000031837) #23	PCYOX1L (ENSCATG00000032100) #24	ENSCATG00000040029 #25	AFAP1L1 (ENSCATG00000029104) #26	ABLIM3 (ENSCATG00000025886) #27	SH3TC2 (ENSCATG00000036976) #28	ADRB2 (ENSCATG00000023186) #29	HTR4 (ENSCATG00000035093) #30	FBXO38 (ENSCATG00000008057) #31	SPINK9 (ENSCATG00000036099)	SPINK7 (ENSCATG00000031455) #34	SPINK13 (ENSCATG00000033181) #35	MARCOL (ENSCATG00000041443)	SPINK6 (ENSCATG00000030265)	SPINK14 (ENSCATG00000042118)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153700.kb.b #22
Catarrhini	ANCESTRAL SPECIES	20	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963	ENSGT00390000010274.a.b	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970
Hominoidea	ANCESTRAL SPECIES	20	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00390000010274.b	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970	ENSGT00390000012351
Hominidae	ANCESTRAL SPECIES	22	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963	ENSGT00390000010274.a.a	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	22	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970	ENSGT00390000012351.o
Homo/Pan group	ANCESTRAL SPECIES	21	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970	ENSGT00390000012351.o
Pan	ANCESTRAL SPECIES	20	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00940000170879	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00950000182810.B.a.w.a	ENSGT00940000161963	ENSGT00390000010274.a.a	ENSGT00860000135994	ENSGT00390000018085.a.b.a	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n
Chimpanzee	MODERN SPECIES	6	BUB1B (ENSPTRG00000006913)	BMF (ENSPTRG00000006912)	SRP14 (ENSPTRG00000006911)	EIF2AK4 (ENSPTRG00000006910)	GPR176 (ENSPTRG00000006909)	FSIP1 (ENSPTRG00000006908)	THBS1 (ENSPTRG00000006907)	ENSPTRG00000049850	ENSPTRG00000006906	RASGRP1 (ENSPTRG00000006905)	FAM98B (ENSPTRG00000006904)	SPRED1 (ENSPTRG00000006903)	TMCO5A (ENSPTRG00000006902)	MEIS2 (ENSPTRG00000006901)	ENSPTRG00000051872	ENSPTRG00000042790 #22	ENSPTRG00000045907	CDIN1 (ENSPTRG00000006899)	DPH6 (ENSPTRG00000006895)	ENSPTRG00000051854	ENSPTRG00000024159	ENSPTRG00000043293	ZNF770 (ENSPTRG00000023628)	ENSPTRG00000034082	ENSPTRG00000047034	ENSPTRG00000049569	AQR (ENSPTRG00000006891)	ACTC1 (ENSPTRG00000006890)	GJD2 (ENSPTRG00000006889)	ENSPTRG00000041962	ENSPTRG00000052392
Bonobo	MODERN SPECIES	6	BMF (ENSPPAG00000039161)	SRP14 (ENSPPAG00000042834)	EIF2AK4 (ENSPPAG00000031553)	ENSPPAG00000033260	GPR176 (ENSPPAG00000041124)	ENSPPAG00000029350	THBS1 (ENSPPAG00000018994)	ENSPPAG00000036304	ENSPPAG00000036138	RASGRP1 (ENSPPAG00000039266)	ENSPPAG00000037742	SPRED1 (ENSPPAG00000035512)	ENSPPAG00000033815	MEIS2 (ENSPPAG00000026165)	ENSPPAG00000017407	ENSPPAG00000039514 #22	ENSPPAG00000039122	ENSPPAG00000021946	CDIN1 (ENSPPAG00000041852)	DPH6 (ENSPPAG00000007244)	ENSPPAG00000038488	ENSPPAG00000035678	ENSPPAG00000038489	ZNF770 (ENSPPAG00000012057)	ENSPPAG00000014787	ENSPPAG00000031790	ENSPPAG00000023291	AQR (ENSPPAG00000030601)	ACTC1 (ENSPPAG00000029795)	GJD2 (ENSPPAG00000026603)	LPCAT4 (ENSPPAG00000034241)
Gorilla	MODERN SPECIES	6	ENSGGOG00000021955	PAK6 (ENSGGOG00000044172)	BUB1B (ENSGGOG00000002288)	BMF (ENSGGOG00000037507)	SRP14 (ENSGGOG00000009921)	EIF2AK4 (ENSGGOG00000000245)	GPR176 (ENSGGOG00000007164)	FSIP1 (ENSGGOG00000008225)	THBS1 (ENSGGOG00000012987)	RASGRP1 (ENSGGOG00000002051)	ENSGGOG00000026320	SPRED1 (ENSGGOG00000041562)	TMCO5A (ENSGGOG00000011525)	MEIS2 (ENSGGOG00000006792)	ENSGGOG00000037956	ENSGGOG00000037921 #22	ENSGGOG00000022532	CDIN1 (ENSGGOG00000013161)	DPH6 (ENSGGOG00000015517)	ENSGGOG00000038238	ENSGGOG00000026626	ENSGGOG00000025487	ZNF770 (ENSGGOG00000027213)	ENSGGOG00000040512	ENSGGOG00000022539	AQR (ENSGGOG00000014073)	ACTC1 (ENSGGOG00000023984)	GJD2 (ENSGGOG00000028294)	ENSGGOG00000010757	LPCAT4 (ENSGGOG00000007665)	NUTM1 (ENSGGOG00000007660)
Orangutan	MODERN SPECIES	6	BUB1B (ENSPPYG00000006345)	CCDC9B (ENSPPYG00000006348)	BMF (ENSPPYG00000006344)	SRP14 (ENSPPYG00000041137)	EIF2AK4 (ENSPPYG00000006341)	GPR176 (ENSPPYG00000006340)	FSIP1 (ENSPPYG00000006339)	THBS1 (ENSPPYG00000006338)	RASGRP1 (ENSPPYG00000006337)	ENSPPYG00000006336	SPRED1 (ENSPPYG00000006334)	ENSPPYG00000034185	TMCO5A (ENSPPYG00000006333)	ENSPPYG00000030766	MEIS2 (ENSPPYG00000006332)	ENSPPYG00000031557 #22	ENSPPYG00000007347	CDIN1 (ENSPPYG00000006331)	DPH6 (ENSPPYG00000006327)	ENSPPYG00000006325	ZNF770 (ENSPPYG00000006322)	ENSPPYG00000037991	AQR (ENSPPYG00000006319)	ACTC1 (ENSPPYG00000006318)	GJD2 (ENSPPYG00000035985)	ENSPPYG00000020054	ENSPPYG00000029647	LPCAT4 (ENSPPYG00000006315)	NUTM1 (ENSPPYG00000006314)	NOP10 (ENSPPYG00000006313)	SLC12A6 (ENSPPYG00000006311)
Gibbon	MODERN SPECIES	21	PAK6 (ENSNLEG00000002732)	BUB1B (ENSNLEG00000002536)	ENSNLEG00000031290	SRP14 (ENSNLEG00000032829)	EIF2AK4 (ENSNLEG00000002209)	GPR176 (ENSNLEG00000002189)	FSIP1 (ENSNLEG00000002126)	THBS1 (ENSNLEG00000001916)	ENSNLEG00000028622	RASGRP1 (ENSNLEG00000011407)	FAM98B (ENSNLEG00000011389)	SPRED1 (ENSNLEG00000031796)	TMCO5A (ENSNLEG00000011348)	ENSNLEG00000030309	MEIS2 (ENSNLEG00000011263)	ENSNLEG00000032549 #22	CDIN1 (ENSNLEG00000032501)	ENSNLEG00000035983	ENSNLEG00000019333	ENSNLEG00000031933	DPH6 (ENSNLEG00000030603)	ENSNLEG00000032512	ENSNLEG00000011208	ENSNLEG00000036071	ENSNLEG00000033103	ENSNLEG00000030671	ENSNLEG00000033760	ZNF770 (ENSNLEG00000011204)	ENSNLEG00000032348	AQR (ENSNLEG00000011180)	ENSNLEG00000031378
Cercopithecidae	ANCESTRAL SPECIES	21	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963	ENSGT00390000010274.a.b	ENSGT00860000135994	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00940000161963.d	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.a	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n	ENSGT00940000160238	ENSGT01100000263737	ENSGT00390000006970	ENSGT00390000012351
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000154268.f.k.b	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00950000182810.B.a.x.a.b	ENSGT00910000147536	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000154349.m.a.d	ENSGT00940000161963.c	ENSGT00390000010274.a.b	ENSGT00860000135994	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.a	ENSGT01030000234574.A.b.b
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000154268.f.k.b	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00420000029820	ENSGT00950000182810.B.a.x.a.b	ENSGT00910000147536	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000154349.m.a.d	ENSGT00940000161963.c	ENSGT00390000010274.a.b	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.a	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.n
Pig-tailed macaque	MODERN SPECIES	77	BUB1B (ENSMNEG00000002963)	BMF (ENSMNEG00000027714)	SRP14 (ENSMNEG00000031339)	EIF2AK4 (ENSMNEG00000022967)	GPR176 (ENSMNEG00000043795)	FSIP1 (ENSMNEG00000032009)	ENSMNEG00000043817	THBS1 (ENSMNEG00000042520)	ENSMNEG00000034537	RASGRP1 (ENSMNEG00000033029)	FAM98B (ENSMNEG00000023526)	SPRED1 (ENSMNEG00000035881)	TMCO5A (ENSMNEG00000035220)	MEIS2 (ENSMNEG00000029349)	ENSMNEG00000009122	ENSMNEG00000032606 #22	CDIN1 (ENSMNEG00000039269)	ENSMNEG00000037799	ENSMNEG00000022153	DPH6 (ENSMNEG00000034223)	ENSMNEG00000022204	ENSMNEG00000024678	ENSMNEG00000040162	ENSMNEG00000026735	ENSMNEG00000030454	AQR (ENSMNEG00000031809)	ACTC1 (ENSMNEG00000028712)	GJD2 (ENSMNEG00000043922)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00420000029820	ENSGT00910000147536	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000154349.m.a.d	ENSGT00940000161963.c	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.a	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a	ENSGT00390000012563.m.b.b	ENSGT00940000160238	ENSGT00390000006970
Rhesus	MODERN SPECIES	17	BUB1B (ENSMMUG00000016686)	BMF (ENSMMUG00000014372)	SRP14 (ENSMMUG00000016061)	EIF2AK4 (ENSMMUG00000038966)	GPR176 (ENSMMUG00000006039)	FSIP1 (ENSMMUG00000006038)	THBS1 (ENSMMUG00000006035)	ENSMMUG00000041220	RASGRP1 (ENSMMUG00000018333)	FAM98B (ENSMMUG00000018332)	ENSMMUG00000056182	SPRED1 (ENSMMUG00000010704)	TMCO5A (ENSMMUG00000009668)	ENSMMUG00000056612	MEIS2 (ENSMMUG00000006840)	ENSMMUG00000006838 #22	CDIN1 (ENSMMUG00000006837)	DPH6 (ENSMMUG00000004160)	ENSMMUG00000061601	ENSMMUG00000064307	ENSMMUG00000055947	ZNF770 (ENSMMUG00000046486)	AQR (ENSMMUG00000002337)	ACTC1 (ENSMMUG00000007027)	GJD2 (ENSMMUG00000007028)	ENSMMUG00000064964	ENSMMUG00000058729	ENSMMUG00000014208	LPCAT4 (ENSMMUG00000020939)	NUTM1 (ENSMMUG00000020938)	NOP10 (ENSMMUG00000046412)
Cercopithecinae_b	ANCESTRAL SPECIES	30	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000154268.f.k.b	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00950000182810.B.a.x.a.b	ENSGT00910000147536	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000154349.m.a.d	ENSGT00940000161963.c	ENSGT00390000010274.a.b	ENSGT00860000135994	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b	ENSGT01030000234574.A.b.b	ENSGT00410000025793.a
Olive baboon	MODERN SPECIES	17	BUB1B (ENSPANG00000019488)	BMF (ENSPANG00000019492)	SRP14 (ENSPANG00000019490)	EIF2AK4 (ENSPANG00000019508)	ENSPANG00000038318	GPR176 (ENSPANG00000019506)	FSIP1 (ENSPANG00000019504)	ENSPANG00000003483	THBS1 (ENSPANG00000019502)	RASGRP1 (ENSPANG00000019501)	FAM98B (ENSPANG00000019500)	SPRED1 (ENSPANG00000037287)	TMCO5A (ENSPANG00000019603)	MEIS2 (ENSPANG00000019600)	ENSPANG00000030111 #22	ENSPANG00000019597 #22	CDIN1 (ENSPANG00000019620)	ENSPANG00000033330	DPH6 (ENSPANG00000019657)	ENSPANG00000049704	ZNF770 (ENSPANG00000025699)	AQR (ENSPANG00000019671)	ACTC1 (ENSPANG00000019679)	GJD2 (ENSPANG00000019768)	ENSPANG00000023414	ENSPANG00000041640	ENSPANG00000044840	SLC12A6 (ENSPANG00000019849)	EMC4 (ENSPANG00000019858)	KATNBL1 (ENSPANG00000019856)	PGBD4 (ENSPANG00000019855)
Cercopithecinae_d	ANCESTRAL SPECIES	69	ENSGT00940000156528	ENSGT00940000158912	ENSGT00390000017896	ENSGT00390000008496.db.a	ENSGT00940000156798	ENSGT00950000182998.B	ENSGT00390000013879	ENSGT00940000155832	ENSGT00530000065235	ENSGT00940000158910	ENSGT00440000037341.b.a.k	ENSGT00940000159180	ENSGT00940000153380.C	ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b #22	ENSGT00390000018465.f	ENSGT00940000154409.d	ENSGT00420000029820	ENSGT00950000182810.B.a.x.a.b	ENSGT00910000147536	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000154349.m.a.d	ENSGT00940000161963.c	ENSGT00390000010274.a.b	ENSGT00860000135994	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b
Drill	MODERN SPECIES	1096														MEIS2 (ENSMLEG00000039517)	ENSMLEG00000015307	ENSMLEG00000033947 #22	ENSMLEG00000038232	CDIN1 (ENSMLEG00000038622)	DPH6 (ENSMLEG00000040602)	ENSMLEG00000035178	ENSMLEG00000013938	ENSMLEG00000038105	ENSMLEG00000012949	ENSMLEG00000038883	AQR (ENSMLEG00000043611)	ACTC1 (ENSMLEG00000036332)	GJD2 (ENSMLEG00000043378)
Sooty mangabey	MODERN SPECIES	434	PAK6 (ENSCATG00000018444)	BUB1B (ENSCATG00000027029)	BMF (ENSCATG00000036225)	SRP14 (ENSCATG00000041431)	EIF2AK4 (ENSCATG00000043911)	GPR176 (ENSCATG00000029166)	FSIP1 (ENSCATG00000038963)	THBS1 (ENSCATG00000032507)	ENSCATG00000038094	RASGRP1 (ENSCATG00000044089)	ENSCATG00000032790	SPRED1 (ENSCATG00000038656)	TMCO5A (ENSCATG00000039346)	MEIS2 (ENSCATG00000034253)	ENSCATG00000000220	ENSCATG00000032275 #22	ENSCATG00000039611	CDIN1 (ENSCATG00000031512)	DPH6 (ENSCATG00000033917)	ENSCATG00000031221	ENSCATG00000019283	ENSCATG00000015796	ENSCATG00000040625	ZNF770 (ENSCATG00000019571)	ENSCATG00000031899	ENSCATG00000041227	AQR (ENSCATG00000040332)	ACTC1 (ENSCATG00000032589)	GJD2 (ENSCATG00000025436)	ENSCATG00000001664
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000153700.kb.b.a #22
Black snub-nosed monkey	MODERN SPECIES	2994																ENSRBIG00000031727 #22
Rhinopithecus	ANCESTRAL SPECIES	445														ENSGT00940000155643	ENSGT00860000136167	ENSGT00940000153700.kb.b.b #22	ENSGT00390000018465.f	ENSGT00420000029820	ENSGT00950000183152.B.c.a.fe.b	ENSGT00940000161963	ENSGT00390000010274.a.b	ENSGT00860000135994	ENSGT00940000156668	ENSGT00940000154710.b	ENSGT01090000260005.a.b.a.b.b
Black snub-nosed monkey	MODERN SPECIES	885														MEIS2 (ENSRBIG00000043206)	ENSRBIG00000038462	ENSRBIG00000035674 #22	ENSRBIG00000041952
Golden snub-nosed monkey	MODERN SPECIES	1330													ENSRROG00000028187	MEIS2 (ENSRROG00000040726)	ENSRROG00000040609	ENSRROG00000011702 #22	CDIN1 (ENSRROG00000031422)	DPH6 (ENSRROG00000038324)	ENSRROG00000028834	ENSRROG00000007777	ENSRROG00000043532	ENSRROG00000035332	AQR (ENSRROG00000044173)	ACTC1 (ENSRROG00000038266)	GJD2 (ENSRROG00000037248)
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153700.kb.b #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153700.kb.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000153700.kb.b #22
Capuchin	MODERN SPECIES	259				ADRA2A (ENSCCAG00000020352)	SHOC2 (ENSCCAG00000022431)	BBIP1 (ENSCCAG00000034972)	PDCD4 (ENSCCAG00000031181)	RBM20 (ENSCCAG00000026869)	SMC3 (ENSCCAG00000034818)	ENSCCAG00000026435	ENSCCAG00000030091	SMNDC1 (ENSCCAG00000021793)	MXI1 (ENSCCAG00000037063)	ADD3 (ENSCCAG00000037358)	XPNPEP1 (ENSCCAG00000034505)	ENSCCAG00000036926 #22	SORCS1 (ENSCCAG00000024493)
Mas night monkey	MODERN SPECIES	928	ENSANAG00000021894	ENSANAG00000024332	NDUFA1 (ENSANAG00000031312)	AKAP14 (ENSANAG00000035034)	NKAP (ENSANAG00000038130)	RHOXF1 (ENSANAG00000037677)	ZBTB33 (ENSANAG00000018611)	TMEM255A (ENSANAG00000028022)	ENSANAG00000020725	ATP1B4 (ENSANAG00000021106)	LAMP2 (ENSANAG00000022316)	CUL4B (ENSANAG00000037771)	ENSANAG00000033714	C1GALT1C1 (ENSANAG00000019504)	ENSANAG00000024009	ENSANAG00000022752 #22	ENSANAG00000036624	GRIA3 (ENSANAG00000038407)	ENSANAG00000034037	ENSANAG00000004172	XIAP (ENSANAG00000025926)	STAG2 (ENSANAG00000031862)	ENSANAG00000021441	ENSANAG00000024609	SH2D1A (ENSANAG00000017592)	TENM1 (ENSANAG00000034279)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Marmoset	MODERN SPECIES	4	SLC20A2 (ENSCJAG00000008029)	SMIM19 (ENSCJAG00000008061)	ENSCJAG00000083868	ENSCJAG00000006505	ENSCJAG00000066704	ENSCJAG00000073426	ENSCJAG00000085434	KAT6A (ENSCJAG00000004274)	ANK1 (ENSCJAG00000004219)	NKX6-3 (ENSCJAG00000004205)	GPAT4 (ENSCJAG00000045025)	GINS4 (ENSCJAG00000011026)	ENSCJAG00000066460	GOLGA7 (ENSCJAG00000080080)	ENSCJAG00000081145	ENSCJAG00000080601 #22	SFRP1 (ENSCJAG00000038849)	ENSCJAG00000073287	ENSCJAG00000076203	ENSCJAG00000058864	ENSCJAG00000076170	ZMAT4 (ENSCJAG00000072071)	TCIM (ENSCJAG00000043083)	IDO2 (ENSCJAG00000006481)	IDO1 (ENSCJAG00000006463)	ADAM2 (ENSCJAG00000006436)	ADAM18 (ENSCJAG00000002167)	ADAM32 (ENSCJAG00000002251)	ADAM9 (ENSCJAG00000002262)	TM2D2 (ENSCJAG00000043754)	HTRA4 (ENSCJAG00000002329)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Olive baboon	MODERN SPECIES	17	PAK6 (ENSPANG00000019484)	BUB1B (ENSPANG00000019488)	BMF (ENSPANG00000019492)	SRP14 (ENSPANG00000019490)	EIF2AK4 (ENSPANG00000019508)	ENSPANG00000038318	GPR176 (ENSPANG00000019506)	FSIP1 (ENSPANG00000019504)	ENSPANG00000003483	THBS1 (ENSPANG00000019502)	RASGRP1 (ENSPANG00000019501)	FAM98B (ENSPANG00000019500)	SPRED1 (ENSPANG00000037287)	TMCO5A (ENSPANG00000019603)	MEIS2 (ENSPANG00000019600)	ENSPANG00000030111 #22	ENSPANG00000019597 #22	CDIN1 (ENSPANG00000019620)	ENSPANG00000033330	DPH6 (ENSPANG00000019657)	ENSPANG00000049704	ZNF770 (ENSPANG00000025699)	AQR (ENSPANG00000019671)	ACTC1 (ENSPANG00000019679)	GJD2 (ENSPANG00000019768)	ENSPANG00000023414	ENSPANG00000041640	ENSPANG00000044840	SLC12A6 (ENSPANG00000019849)	EMC4 (ENSPANG00000019858)	KATNBL1 (ENSPANG00000019856)
Macaca	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Crab-eating macaque	MODERN SPECIES	17	CCDC9B (ENSMFAG00000043689)	ENSMFAG00000053192	BUB1B (ENSMFAG00000032047)	BMF (ENSMFAG00000055720)	SRP14 (ENSMFAG00000034410)	EIF2AK4 (ENSMFAG00000035646)	GPR176 (ENSMFAG00000039488)	THBS1 (ENSMFAG00000033011)	FSIP1 (ENSMFAG00000031510)	FAM98B (ENSMFAG00000016144)	RASGRP1 (ENSMFAG00000030248)	SPRED1 (ENSMFAG00000051558)	TMCO5A (ENSMFAG00000045218)	MEIS2 (ENSMFAG00000024718)	ENSMFAG00000047442	ENSMFAG00000036125 #22	CDIN1 (ENSMFAG00000000782)	DPH6 (ENSMFAG00000002826)	ENSMFAG00000054805	ENSMFAG00000053578	ENSMFAG00000064025	ZNF770 (ENSMFAG00000030007)	AQR (ENSMFAG00000030453)	ENSMFAG00000048524	ACTC1 (ENSMFAG00000039604)	GJD2 (ENSMFAG00000036155)	ENSMFAG00000052534	ENSMFAG00000053567	ENSMFAG00000054995	ENSMFAG00000052992	LPCAT4 (ENSMFAG00000032383)
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Homo/Pan group	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Pan	ANCESTRAL SPECIES																	ENSGT00940000153700.lb #22
Chimpanzee	MODERN SPECIES	2	KBTBD3 (ENSPTRG00000004235)	MSANTD4 (ENSPTRG00000004234)	GRIA4 (ENSPTRG00000004233)	ENSPTRG00000004231	ENSPTRG00000052161	CASP1 (ENSPTRG00000048268)	CASP5 (ENSPTRG00000004230)	CASP4 (ENSPTRG00000023646)	CASP12 (ENSPTRG00000028413)	PDGFD (ENSPTRG00000004227)	DYNC2H1 (ENSPTRG00000004224)	DCUN1D5 (ENSPTRG00000004223)	MMP13 (ENSPTRG00000004222)	MMP12 (ENSPTRG00000048755)	MMP3 (ENSPTRG00000004220)	ENSPTRG00000043621 #22	MMP1 (ENSPTRG00000023318)	MMP10 (ENSPTRG00000004219)	MMP8 (ENSPTRG00000004218)	MMP27 (ENSPTRG00000004217)	MMP20 (ENSPTRG00000004216)	MMP7 (ENSPTRG00000004215)	TMEM123 (ENSPTRG00000022738)	BIRC2 (ENSPTRG00000004213)	BIRC3 (ENSPTRG00000004212)	YAP1 (ENSPTRG00000004211)	CFAP300 (ENSPTRG00000004210)	CEP126 (ENSPTRG00000004209)	ANGPTL5 (ENSPTRG00000004208)	TRPC6 (ENSPTRG00000004207)	PGR (ENSPTRG00000004206)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	1069																ENSSARG00000011446 #22
Common shrew	MODERN SPECIES	10217																ENSSARG00000001029 #22
Hedgehog	MODERN SPECIES	1577																CSNK1A1 (ENSEEUG00000008862) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Suina	ANCESTRAL SPECIES	11	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225
Chacoan peccary	MODERN SPECIES	912					CAMK2A (ENSCWAG00000006565) #12	SLC6A7 (ENSCWAG00000006482) #13	CDX1 (ENSCWAG00000006455) #14	PDGFRB (ENSCWAG00000006419) #15	ENSCWAG00000006378 #16	ENSCWAG00000006349 #16	HMGXB3 (ENSCWAG00000006248) #17	SLC26A2 (ENSCWAG00000006207) #18	PDE6A (ENSCWAG00000005987) #19	PPARGC1B (ENSCWAG00000005883) #20	ARHGEF37 (ENSCWAG00000005846) #21	CSNK1A1 (ENSCWAG00000005716) #22	IL17B (ENSCWAG00000005656) #23	PCYOX1L (ENSCWAG00000005628) #24	GRPEL2 (ENSCWAG00000005612) #25	AFAP1L1 (ENSCWAG00000005442) #26	ABLIM3 (ENSCWAG00000004703) #27	SH3TC2 (ENSCWAG00000004496) #28	ADRB2 (ENSCWAG00000004475) #29	HTR4 (ENSCWAG00000004339) #30	FBXO38 (ENSCWAG00000004229) #31	SPINK9 (ENSCWAG00000004188)	SPINK7 (ENSCWAG00000004155) #34	SPINK13 (ENSCWAG00000004078) #35	ENSCWAG00000004038	MARCOL (ENSCWAG00000004019)	SPINK6 (ENSCWAG00000003986)
Pig	MODERN SPECIES	10	NDST1 (ENSSSCG00000032731) #7	RPS14 (ENSSSCG00000054578) #8	CD74 (ENSSSCG00000033262) #9	TCOF1 (ENSSSCG00000014450) #10	ARSI (ENSSSCG00000014448) #11	CAMK2A (ENSSSCG00000014443) #12	SLC6A7 (ENSSSCG00000014447) #13	CDX1 (ENSSSCG00000060480) #14	PDGFRB (ENSSSCG00000022741) #15	CSF1R (ENSSSCG00000014441) #16	HMGXB3 (ENSSSCG00000014440) #17	SLC26A2 (ENSSSCG00000039045) #18	PDE6A (ENSSSCG00000014438) #19	PPARGC1B (ENSSSCG00000014437) #20	ARHGEF37 (ENSSSCG00000014436) #21	CSNK1A1 (ENSSSCG00000014435) #22	ENSSSCG00000032383	IL17B (ENSSSCG00000014434) #23	PCYOX1L (ENSSSCG00000014433) #24	GRPEL2 (ENSSSCG00000014432) #25	AFAP1L1 (ENSSSCG00000014431) #26	ABLIM3 (ENSSSCG00000014430) #27	SH3TC2 (ENSSSCG00000023279) #28	ADRB2 (ENSSSCG00000052586) #29	HTR4 (ENSSSCG00000014428) #30	FBXO38 (ENSSSCG00000014427) #31	SPINK9 (ENSSSCG00000014426)	ENSSSCG00000061955	SPINK7 (ENSSSCG00000054392) #34	ENSSSCG00000047137 #35	ENSSSCG00000029257
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000165308	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00980000199376	ENSGT00740000116871
Alpaca	MODERN SPECIES	1314															ARHGEF37 (ENSVPAG00000006738) #21	CSNK1A1 (ENSVPAG00000006736) #22	PCYOX1L (ENSVPAG00000006735) #24	GRPEL2 (ENSVPAG00000006734) #25	ENSVPAG00000006732 #26
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	204	BMX (ENSCDRG00005013111)	PIR (ENSCDRG00005013007)	VEGFD (ENSCDRG00005012929)	PIGA (ENSCDRG00005012637)	ENSCDRG00005012439	ASB9 (ENSCDRG00005012379)	MOSPD2 (ENSCDRG00005012284)	GLRA2 (ENSCDRG00005012187)	GEMIN8 (ENSCDRG00005012138)	GPM6B (ENSCDRG00005011951)	OFD1 (ENSCDRG00005010858)	ENSCDRG00005010752	RAB9A (ENSCDRG00005010735)	EGFL6 (ENSCDRG00005010545)	ENSCDRG00005010502	ENSCDRG00005010428 #22	TMSB4X (ENSCDRG00005010405)	TLR8 (ENSCDRG00005010375)	TLR7 (ENSCDRG00005010320)	PRPS2 (ENSCDRG00005010248)	FRMPD4 (ENSCDRG00005009509)	ENSCDRG00005008775	AMELX (ENSCDRG00005008628)	ARHGAP6 (ENSCDRG00005008483)	HCCS (ENSCDRG00005019692)	MID1 (ENSCDRG00005019668)	CLCN4 (ENSCDRG00005019632)	WWC3 (ENSCDRG00005019584)	ENSCDRG00005019574	ENSCDRG00005019562	GPR143 (ENSCDRG00005019461)
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	1	MMP27 (ENSCDRG00005001340)	MMP20 (ENSCDRG00005001309)	MMP7 (ENSCDRG00005001294)	ENSCDRG00005001282	ENSCDRG00005001278	BIRC2 (ENSCDRG00005001258)	BIRC3 (ENSCDRG00005001220)	YAP1 (ENSCDRG00005001090)	CFAP300 (ENSCDRG00005001024)	CEP126 (ENSCDRG00005000987)	ANGPTL5 (ENSCDRG00005000957)	ENSCDRG00005000933	TRPC6 (ENSCDRG00005000413)	PGR (ENSCDRG00005000147)	ARHGAP42 (ENSCDRG00005017619)	ENSCDRG00005017534 #22	CNTN5 (ENSCDRG00005017083)	ENSCDRG00005017020	JRKL (ENSCDRG00005017005)	CCDC82 (ENSCDRG00005016974)	ENSCDRG00005016961	ENSCDRG00005016889	MTMR2 (ENSCDRG00005016764)	CEP57 (ENSCDRG00005016540)	FAM76B (ENSCDRG00005016457)	SESN3 (ENSCDRG00005016152)	ENSCDRG00005016090	ENSCDRG00005016007	ENSCDRG00005015979	CWC15 (ENSCDRG00005015943)	AMOTL1 (ENSCDRG00005015718)
Arabian camel	MODERN SPECIES	6	GKN1 (ENSCDRG00005008384)	ANTXR1 (ENSCDRG00005008451)	GFPT1 (ENSCDRG00005008607)	NFU1 (ENSCDRG00005008792)	AAK1 (ENSCDRG00005008926)	ANXA4 (ENSCDRG00005009169)	ENSCDRG00005009251	SNRNP27 (ENSCDRG00005009338)	MXD1 (ENSCDRG00005009417)	ENSCDRG00005009594	C2orf42 (ENSCDRG00005009631)	TIA1 (ENSCDRG00005009740)	PCYOX1 (ENSCDRG00005010085) ##24	ENSCDRG00005010218	ENSCDRG00005010485	ENSCDRG00005010517 #22	TGFA (ENSCDRG00005010583)	ADD2 (ENSCDRG00005010647)	FIGLA (ENSCDRG00005010856)	CLEC4F (ENSCDRG00005011013)	CD207 (ENSCDRG00005011074)	ATP6V1B1 (ENSCDRG00005011315)	ANKRD53 (ENSCDRG00005011486)	ENSCDRG00005011551	NAGK (ENSCDRG00005011715)	PAIP2B (ENSCDRG00005011797)	ZNF638 (ENSCDRG00005011858)	DYSF (ENSCDRG00005012740)	CYP26B1 (ENSCDRG00005018203)	EXOC6B (ENSCDRG00005018306)	ENSCDRG00005018472
Arabian camel	MODERN SPECIES	22	RPS14 (ENSCDRG00005002058) #8	CD74 (ENSCDRG00005002071) #9	TCOF1 (ENSCDRG00005002111) #10	ARSI (ENSCDRG00005002191) #11	CAMK2A (ENSCDRG00005002212) #12	SLC6A7 (ENSCDRG00005002268) #13	CDX1 (ENSCDRG00005002290) #14	PDGFRB (ENSCDRG00005002306) #15	CSF1R (ENSCDRG00005002338) #16	HMGXB3 (ENSCDRG00005002388) #17	TIGD6 (ENSCDRG00005002431)	SLC26A2 (ENSCDRG00005002437) #18	PDE6A (ENSCDRG00005002480) #19	PPARGC1B (ENSCDRG00005002597) #20	ARHGEF37 (ENSCDRG00005002648) #21	ENSCDRG00005002711 #22	IL17B (ENSCDRG00005002983) #23	PCYOX1L (ENSCDRG00005003002) #24	GRPEL2 (ENSCDRG00005003018) #25	AFAP1L1 (ENSCDRG00005003036) #26	ABLIM3 (ENSCDRG00005003081) #27	SH3TC2 (ENSCDRG00005003129) #28	ADRB2 (ENSCDRG00005003202) #29	HTR4 (ENSCDRG00005003218) #30	FBXO38 (ENSCDRG00005003249) #31	ENSCDRG00005003281	SPINK9 (ENSCDRG00005003292)	SPINK7 (ENSCDRG00005003303) #34	SPINK13 (ENSCDRG00005003321) #35	ENSCDRG00005003332	ENSCDRG00005005323
Arabian camel	MODERN SPECIES	6	DHX57 (ENSCDRG00005012970)	GEMIN6 (ENSCDRG00005012804)	ENSCDRG00005012663	SRSF7 (ENSCDRG00005012410)	GALM (ENSCDRG00005012034)	HNRNPLL (ENSCDRG00005009505)	ATL2 (ENSCDRG00005007883)	ENSCDRG00005007552	CYP1B1 (ENSCDRG00005007457)	RMDN2 (ENSCDRG00005017770)	CDC42EP3 (ENSCDRG00005017747)	QPCT (ENSCDRG00005017715)	PRKD3 (ENSCDRG00005017670)	NDUFAF7 (ENSCDRG00005017561)	CEBPZ (ENSCDRG00005017460)	ENSCDRG00005017423 #22	SULT6B1 (ENSCDRG00005017346)	CEBPZOS (ENSCDRG00005017281)	EIF2AK2 (ENSCDRG00005017216)	GPATCH11 (ENSCDRG00005017118)	HEATR5B (ENSCDRG00005016997)	STRN (ENSCDRG00005016938)	VIT (ENSCDRG00005016678)	FEZ2 (ENSCDRG00005016570)	CRIM1 (ENSCDRG00005016524)	ENSCDRG00005016505	ENSCDRG00005016492	ENSCDRG00005016446	FAM98A (ENSCDRG00005016403)	RASGRP3 (ENSCDRG00005016347)	LTBP1 (ENSCDRG00005016100)
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000000703.h.tb #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.k.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00950000182965.a.b.b.a	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00530000064225
Blue whale	MODERN SPECIES	14	CD74 (ENSBMSG00010002205) #9	TCOF1 (ENSBMSG00010002122) #10	ARSI (ENSBMSG00010002055) #11	CAMK2A (ENSBMSG00010001552) #12	SLC6A7 (ENSBMSG00010001480) #13	CDX1 (ENSBMSG00010001462) #14	PDGFRB (ENSBMSG00010001441) #15	ENSBMSG00010001419	CSF1R (ENSBMSG00010001379) #16	HMGXB3 (ENSBMSG00010001346) #17	TIGD6 (ENSBMSG00010001323)	SLC26A2 (ENSBMSG00010001309) #18	PDE6A (ENSBMSG00010001237) #19	PPARGC1B (ENSBMSG00010001147) #20	ARHGEF37 (ENSBMSG00010001077) #21	CSNK1A1 (ENSBMSG00010000981) #22	IL17B (ENSBMSG00010000910) #23	PCYOX1L (ENSBMSG00010000893) #24	ENSBMSG00010000880 #25	AFAP1L1 (ENSBMSG00010000816) #26	ABLIM3 (ENSBMSG00010000753) #27	SH3TC2 (ENSBMSG00010000673) #28	ADRB2 (ENSBMSG00010000651) #29	HTR4 (ENSBMSG00010000543) #30	FBXO38 (ENSBMSG00010000482) #31	SPINK7 (ENSBMSG00010000439) #34	SPINK13 (ENSBMSG00010000418) #35	ENSBMSG00010000399	SPINK6 (ENSBMSG00010000377)	ENSBMSG00010000359	ENSBMSG00010000343
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000000703.h.tb #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.k.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00950000182965.a.b.b.a	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00530000064225
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000000703.h.tb #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.k.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00530000064225	ENSGT00940000162856	ENSGT00510000048608
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000000703.h.tb #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.k.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00530000064225	ENSGT00940000162856	ENSGT00510000048608
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00940000157857 #7	ENSGT00390000000703.h.tb #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.k.a #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00530000064225	ENSGT00940000162856	ENSGT00510000048608
Beluga whale	MODERN SPECIES	34	NDST1 (ENSDLEG00000004880) #7	RPS14 (ENSDLEG00000004853) #8	CD74 (ENSDLEG00000004841) #9	TCOF1 (ENSDLEG00000004784) #10	ARSI (ENSDLEG00000004761) #11	CAMK2A (ENSDLEG00000004732) #12	SLC6A7 (ENSDLEG00000004710) #13	CDX1 (ENSDLEG00000004703) #14	PDGFRB (ENSDLEG00000004691) #15	CSF1R (ENSDLEG00000004672) #16	HMGXB3 (ENSDLEG00000004299) #17	SLC26A2 (ENSDLEG00000004278) #18	PDE6A (ENSDLEG00000004080) #19	PPARGC1B (ENSDLEG00000004020) #20	ARHGEF37 (ENSDLEG00000003999) #21	CSNK1A1 (ENSDLEG00000003984) #22	IL17B (ENSDLEG00000003971) #23	PCYOX1L (ENSDLEG00000003965) #24	GRPEL2 (ENSDLEG00000003935) #25	AFAP1L1 (ENSDLEG00000003846) #26	ABLIM3 (ENSDLEG00000003752) #27	ADRB2 (ENSDLEG00000003724) #29	SH3TC2 (ENSDLEG00000003686) #28	HTR4 (ENSDLEG00000003669) #30	FBXO38 (ENSDLEG00000003654) #31	ENSDLEG00000003646	ENSDLEG00000003637	SPINK5 (ENSDLEG00000003623)	CUNH5orf46 (ENSDLEG00000003615)	SCGB3A2 (ENSDLEG00000003606)	ENSDLEG00000003602
Narwhal	MODERN SPECIES	298	NDST1 (ENSMMNG00015002590) #7	RPS14 (ENSMMNG00015002549) #8	CD74 (ENSMMNG00015002514) #9	TCOF1 (ENSMMNG00015002369) #10	ARSI (ENSMMNG00015002304) #11	CAMK2A (ENSMMNG00015002266) #12	SLC6A7 (ENSMMNG00015002220) #13	CDX1 (ENSMMNG00015002198) #14	PDGFRB (ENSMMNG00015002105) #15	CSF1R (ENSMMNG00015002039) #16	HMGXB3 (ENSMMNG00015001971) #17	SLC26A2 (ENSMMNG00015001926) #18	PDE6A (ENSMMNG00015001823) #19	PPARGC1B (ENSMMNG00015001754) #20	ARHGEF37 (ENSMMNG00015001691) #21	CSNK1A1 (ENSMMNG00015001586) #22	IL17B (ENSMMNG00015001496) #23	PCYOX1L (ENSMMNG00015001461) #24	ENSMMNG00015001433 #25	AFAP1L1 (ENSMMNG00015001296) #26	ABLIM3 (ENSMMNG00015001180) #27	SH3TC2 (ENSMMNG00015001111) #28	ADRB2 (ENSMMNG00015001090) #29	HTR4 (ENSMMNG00015000986) #30	FBXO38 (ENSMMNG00015000846) #31	SPINK7 (ENSMMNG00015000804) #34	SPINK13 (ENSMMNG00015000781) #35	ENSMMNG00015000765	SPINK6 (ENSMMNG00015000740)	SPINK14 (ENSMMNG00015000704)	C5orf46 (ENSMMNG00015000681)
Vaquita	MODERN SPECIES	14	ENSPSNG00000016534 #8	CD74 (ENSPSNG00000016586) #9	TCOF1 (ENSPSNG00000016692) #10	ARSI (ENSPSNG00000016936) #11	CAMK2A (ENSPSNG00000017048) #12	SLC6A7 (ENSPSNG00000018104) #13	CDX1 (ENSPSNG00000018239) #14	PDGFRB (ENSPSNG00000018303) #15	CSF1R (ENSPSNG00000018376) #16	HMGXB3 (ENSPSNG00000018442) #17	TIGD6 (ENSPSNG00000018522)	SLC26A2 (ENSPSNG00000018617) #18	PDE6A (ENSPSNG00000018694) #19	PPARGC1B (ENSPSNG00000019085) #20	ARHGEF37 (ENSPSNG00000019187) #21	CSNK1A1 (ENSPSNG00000019268) #22	IL17B (ENSPSNG00000019415) #23	PCYOX1L (ENSPSNG00000019459) #24	GRPEL2 (ENSPSNG00000019509) #25	AFAP1L1 (ENSPSNG00000019557) #26	ABLIM3 (ENSPSNG00000019641) #27	SH3TC2 (ENSPSNG00000019837) #28	ADRB2 (ENSPSNG00000019879) #29	HTR4 (ENSPSNG00000000133) #30	FBXO38 (ENSPSNG00000000192) #31	SPINK7 (ENSPSNG00000000221) #34	SPINK13 (ENSPSNG00000000253) #35	SPINK6 (ENSPSNG00000000297)	ENSPSNG00000000317	C5orf46 (ENSPSNG00000000335)	SCGB3A2 (ENSPSNG00000000357)
Dolphin	MODERN SPECIES	1751										CSF1R (ENSTTRG00000008450) #16	HMGXB3 (ENSTTRG00000008445) #17	SLC26A2 (ENSTTRG00000008441) #18	PDE6A (ENSTTRG00000008434) #19	PPARGC1B (ENSTTRG00000008430) #20	ARHGEF37 (ENSTTRG00000008422) #21	CSNK1A1 (ENSTTRG00000008420) #22	IL17B (ENSTTRG00000008419) #23	PCYOX1L (ENSTTRG00000008409) #24	GRPEL2 (ENSTTRG00000008406) #25	AFAP1L1 (ENSTTRG00000008394) #26	ABLIM3 (ENSTTRG00000008384) #27	SH3TC2 (ENSTTRG00000008382) #28	ADRB2 (ENSTTRG00000008381) #29
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	19	RBM22 (ENSPCTG00005000903)	DCTN4 (ENSPCTG00005000869)	ENSPCTG00005000853	ENSPCTG00005000840	SMIM3 (ENSPCTG00005000833)	ZNF300 (ENSPCTG00005000820)	ENSPCTG00005000808	ENSPCTG00005000790	ENSPCTG00005000747	ENSPCTG00005000659 #10	HMGXB3 (ENSPCTG00005000575) #17	TIGD6 (ENSPCTG00005000546)	SLC26A2 (ENSPCTG00005000530) #18	PDE6A (ENSPCTG00005000439) #19	ENSPCTG00005000378	CSNK1A1 (ENSPCTG00005000355) #22	IL17B (ENSPCTG00005003754) #23	PCYOX1L (ENSPCTG00005003744) #24	GRPEL2 (ENSPCTG00005003736) #25	AFAP1L1 (ENSPCTG00005003707) #26	ABLIM3 (ENSPCTG00005003581) #27	SH3TC2 (ENSPCTG00005003526) #28	HTR4 (ENSPCTG00005003439) #30	FBXO38 (ENSPCTG00005003322) #31	ENSPCTG00005003282	SPINK9 (ENSPCTG00005003264)	SPINK7 (ENSPCTG00005003251) #34	SPINK13 (ENSPCTG00005003241) #35	ENSPCTG00005003234	SPINK6 (ENSPCTG00005003225)	SPINK14 (ENSPCTG00005003207)
Sperm whale	MODERN SPECIES	237															ARHGEF37 (ENSPCTG00005018740) #21	ENSPCTG00005018690 #22
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES		ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Percora_a	ANCESTRAL SPECIES		ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00740000116871	ENSGT00900000141664
Bovidae	ANCESTRAL SPECIES		ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00940000165308.c.b	ENSGT00980000199376
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000157857 #7	ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.i #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00940000165308.c.b	ENSGT00960000191860
Bos	ANCESTRAL SPECIES	3	ENSGT00940000157857 #7	ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.i #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00940000165308.c.b	ENSGT00960000191860
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000157857 #7	ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.i #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00740000116871	ENSGT00900000141664
Cow	MODERN SPECIES	26	NDST1 (ENSBTAG00000001692) #7	RPS14 (ENSBTAG00000008570) #8	CD74 (ENSBTAG00000015228) #9	TCOF1 (ENSBTAG00000015224) #10	ARSI (ENSBTAG00000012834) #11	CAMK2A (ENSBTAG00000020087) #12	SLC6A7 (ENSBTAG00000000910) #13	CDX1 (ENSBTAG00000012014) #14	PDGFRB (ENSBTAG00000002804) #15	CSF1R (ENSBTAG00000012771) #16	HMGXB3 (ENSBTAG00000012768) #17	SLC26A2 (ENSBTAG00000014615) #18	PDE6A (ENSBTAG00000012945) #19	PPARGC1B (ENSBTAG00000012943) #20	ARHGEF37 (ENSBTAG00000015419) #21	CSNK1A1 (ENSBTAG00000005326) #22	IL17B (ENSBTAG00000010578) #23	PCYOX1L (ENSBTAG00000019951) #24	GRPEL2 (ENSBTAG00000019950) #25	ENSBTAG00000052766	AFAP1L1 (ENSBTAG00000019948) #26	ENSBTAG00000048563	ABLIM3 (ENSBTAG00000004896) #27	SH3TC2 (ENSBTAG00000017151) #28	ADRB2 (ENSBTAG00000002144) #29	HTR4 (ENSBTAG00000010837) #30	FBXO38 (ENSBTAG00000020303) #31	SPINK9 (ENSBTAG00000052488)	SPINK7 (ENSBTAG00000044183) #34	ENSBTAG00000033759	ENSBTAG00000050942
Hybrid Bos Indicus	MODERN SPECIES	26	NDST1 (ENSBIXG00005020779) #7	ENSBIXG00005003493 #8	CD74 (ENSBIXG00005020644) #9	TCOF1 (ENSBIXG00005003479) #10	ARSI (ENSBIXG00005020426) #11	CAMK2A (ENSBIXG00005020401) #12	SLC6A7 (ENSBIXG00005020348) #13	CDX1 (ENSBIXG00005003420) #14	PDGFRB (ENSBIXG00005003405) #15	CSF1R (ENSBIXG00005003356) #16	HMGXB3 (ENSBIXG00005020173) #17	SLC26A2 (ENSBIXG00005003313) #18	PDE6A (ENSBIXG00005006399) #19	PPARGC1B (ENSBIXG00005007671) #20	ARHGEF37 (ENSBIXG00005019892) #21	ENSBIXG00005019760 #22	IL17B (ENSBIXG00005003205) #23	PCYOX1L (ENSBIXG00005003199) #24	ENSBIXG00005019586 #25	AFAP1L1 (ENSBIXG00005003178) #26	ENSBIXG00005019455	ABLIM3 (ENSBIXG00005019407) #27	SH3TC2 (ENSBIXG00005019209) #28	ENSBIXG00005003118	ADRB2 (ENSBIXG00005019131) #29	HTR4 (ENSBIXG00005019071) #30	FBXO38 (ENSBIXG00005018959) #31	SPINK9 (ENSBIXG00005018872)	SPINK7 (ENSBIXG00005018848) #34	SPINK13 (ENSBIXG00005018819) #35	ENSBIXG00005018796
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000157857 #7	ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b.i #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00940000165308.c.b	ENSGT00960000191860
Domestic yak	MODERN SPECIES	27	NDST1 (ENSBGRG00000022569) #7	ENSBGRG00000022490 #8	CD74 (ENSBGRG00000022423) #9	TCOF1 (ENSBGRG00000022016) #10	ARSI (ENSBGRG00000021902) #11	CAMK2A (ENSBGRG00000021420) #12	SLC6A7 (ENSBGRG00000021265) #13	CDX1 (ENSBGRG00000021205) #14	PDGFRB (ENSBGRG00000020782) #15	CSF1R (ENSBGRG00000020676) #16	HMGXB3 (ENSBGRG00000020613) #17	SLC26A2 (ENSBGRG00000020568) #18	PDE6A (ENSBGRG00000020131) #19	PPARGC1B (ENSBGRG00000019954) #20	ARHGEF37 (ENSBGRG00000019623) #21	ENSBGRG00000019297 #22	IL17B (ENSBGRG00000019180) #23	PCYOX1L (ENSBGRG00000019037) #24	GRPEL2 (ENSBGRG00000018960) #25	AFAP1L1 (ENSBGRG00000018883) #26	ABLIM3 (ENSBGRG00000018552) #27	SH3TC2 (ENSBGRG00000018333) #28	ADRB2 (ENSBGRG00000018281) #29	HTR4 (ENSBGRG00000018072) #30	FBXO38 (ENSBGRG00000017630) #31	SPINK9 (ENSBGRG00000017477)	SPINK7 (ENSBGRG00000017405) #34	SPINK13 (ENSBGRG00000017334) #35	ENSBGRG00000017256	ENSBGRG00000017229	MARCOL (ENSBGRG00000017105)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	716								CSF1R (ENSBMUG00000015223) #16	HMGXB3 (ENSBMUG00000015189) #17	SLC26A2 (ENSBMUG00000015170) #18	ENSBMUG00000015150	PDE6A (ENSBMUG00000015080) #19	PPARGC1B (ENSBMUG00000015009) #20	ARHGEF37 (ENSBMUG00000014980) #21	ENSBMUG00000014942 #22	ENSBMUG00000014922 #22	IL17B (ENSBMUG00000014891) #23	PCYOX1L (ENSBMUG00000014872) #24	GRPEL2 (ENSBMUG00000014818) #25	AFAP1L1 (ENSBMUG00000014791) #26	ABLIM3 (ENSBMUG00000014582) #27
Wild yak	MODERN SPECIES	716									CSF1R (ENSBMUG00000015223) #16	HMGXB3 (ENSBMUG00000015189) #17	SLC26A2 (ENSBMUG00000015170) #18	ENSBMUG00000015150	PDE6A (ENSBMUG00000015080) #19	PPARGC1B (ENSBMUG00000015009) #20	ARHGEF37 (ENSBMUG00000014980) #21	ENSBMUG00000014942 #22	ENSBMUG00000014922 #22	IL17B (ENSBMUG00000014891) #23	PCYOX1L (ENSBMUG00000014872) #24	GRPEL2 (ENSBMUG00000014818) #25	AFAP1L1 (ENSBMUG00000014791) #26	ABLIM3 (ENSBMUG00000014582) #27
American bison	MODERN SPECIES	3206	NDST1 (ENSBBBG00000000377) #7	ENSBBBG00000000348 #8	CD74 (ENSBBBG00000006073) #9	TCOF1 (ENSBBBG00000008689) #10	ARSI (ENSBBBG00000023880) #11	CAMK2A (ENSBBBG00000023955) #12	SLC6A7 (ENSBBBG00000008692) #13	CDX1 (ENSBBBG00000023991) #14	PDGFRB (ENSBBBG00000006246) #15	CSF1R (ENSBBBG00000006257) #16	HMGXB3 (ENSBBBG00000006289) #17	SLC26A2 (ENSBBBG00000008983) #18	PDE6A (ENSBBBG00000024328) #19	PPARGC1B (ENSBBBG00000024422) #20	ARHGEF37 (ENSBBBG00000000273) #21	ENSBBBG00000024576 #22	IL17B (ENSBBBG00000024601) #23	PCYOX1L (ENSBBBG00000024617) #24	ENSBBBG00000024632 #25	AFAP1L1 (ENSBBBG00000024685) #26	ABLIM3 (ENSBBBG00000025023) #27	SH3TC2 (ENSBBBG00000025093) #28	ADRB2 (ENSBBBG00000008077) #29	HTR4 (ENSBBBG00000025179) #30	FBXO38 (ENSBBBG00000007859) #31	SPINK9 (ENSBBBG00000025423)	SPINK7 (ENSBBBG00000025440) #34	SPINK13 (ENSBBBG00000007867) #35	ENSBBBG00000025494	ENSBBBG00000010030	ENSBBBG00000010033
Bovinae	ANCESTRAL SPECIES	14	ENSGT00940000157888	ENSGT00940000158331	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043	ENSGT00390000001667	ENSGT01030000234543.F	ENSGT00450000040303	ENSGT00390000013344	ENSGT00940000162158	ENSGT00940000162582	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a	ENSGT00390000012078.b.u	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000153700.ub.a.b #22	ENSGT00940000160867	ENSGT00390000014471	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b.g.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.b.a	ENSGT01040000240406.A.b.a.a.b.g.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.a	ENSGT00940000162868.f.b	ENSGT01040000240406.A.b.a.a.a.a.b.r
Bos	ANCESTRAL SPECIES	10	ENSGT00940000157888	ENSGT00940000158331	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043	ENSGT00390000001667	ENSGT01030000234543.F	ENSGT00450000040303	ENSGT00390000013344	ENSGT00940000162158	ENSGT00940000162582	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a	ENSGT00390000012078.b.u	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000153700.ub.a.b #22	ENSGT00940000160867	ENSGT00390000014471.n	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b.g.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.b.a	ENSGT01040000240406.A.b.a.a.b.g.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.a	ENSGT00940000162868.f.b
Bos_b	ANCESTRAL SPECIES	37	ENSGT00940000157888	ENSGT00940000158331	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043	ENSGT00390000001667	ENSGT01030000234543.F	ENSGT00450000040303	ENSGT00390000013344	ENSGT00940000162158	ENSGT00940000162582	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a	ENSGT00390000012078.b.u	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000153700.ub.a.b #22	ENSGT00940000160867	ENSGT00390000014471.n	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b.g.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.b.a	ENSGT01040000240406.A.b.a.a.b.g.a	ENSGT01040000240406.A.b.a.a.a.a.b.q.a.a	ENSGT00940000162868.f.b
Cow	MODERN SPECIES	27	ENSBTAG00000048854	EPB41L4B (ENSBTAG00000017063)	FRRS1L (ENSBTAG00000017936)	TMEM245 (ENSBTAG00000038794)	ENSBTAG00000051855	CTNNAL1 (ENSBTAG00000004997)	ABITRAM (ENSBTAG00000004996)	ELP1 (ENSBTAG00000004991)	ACTL7A (ENSBTAG00000019468)	ACTL7B (ENSBTAG00000019467)	ENSBTAG00000000885	KLF4 (ENSBTAG00000020355)	RAD23B (ENSBTAG00000001926)	ZNF462 (ENSBTAG00000019187)	TMEM38B (ENSBTAG00000034867)	ENSBTAG00000046079 #22	TAL2 (ENSBTAG00000045852)	FKTN (ENSBTAG00000010247)	FSD1L (ENSBTAG00000013420)	SLC44A1 (ENSBTAG00000007163)	ABCA1 (ENSBTAG00000020661)	NIPSNAP3A (ENSBTAG00000006901)	OR13C1 (ENSBTAG00000048409)	OR13C8 (ENSBTAG00000049056)	OR13D2C (ENSBTAG00000049256)	OR13C3 (ENSBTAG00000036012)	OR13C2C (ENSBTAG00000052019)	OR13D2 (ENSBTAG00000000145)	OR13C2 (ENSBTAG00000050464)	OR13F1B (ENSBTAG00000016173)	OR13C2D (ENSBTAG00000053491)
Bos_a	ANCESTRAL SPECIES	20	ENSGT00940000157888	ENSGT00940000158331	ENSGT00390000016760.c.a.a.b	ENSGT00940000159043	ENSGT00390000001667	ENSGT01030000234543.F	ENSGT00450000040303	ENSGT00390000013344	ENSGT00940000162158	ENSGT00940000162582	ENSGT00550000074801.g.a	ENSGT00940000156229.k.a	ENSGT00390000012078.b.u	ENSGT00940000156411	ENSGT00390000018845.e	ENSGT00940000153700.ub.a.b #22	ENSGT00940000160867	ENSGT00390000014471.n	ENSGT01100000263480.a.a.b.a.b.b.b.b.a.b	ENSGT00940000157979	ENSGT00940000157174	ENSGT00940000154658.b	ENSGT00950000183018.b.k.a	ENSGT01040000240406.A.b.a.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.a.a.a.a.b	ENSGT01040000240406.A.b.a.a.b.g.b	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.a	ENSGT01040000240406.A.b.a.a.a.a.b.r	ENSGT01040000240406.A.b.a.a.a.a.a.b.a.b	ENSGT00940000162868.f.a	ENSGT00940000162868.e
Domestic yak	MODERN SPECIES	26	EPB41L4B (ENSBGRG00000002536)	FRRS1L (ENSBGRG00000002503)	TMEM245 (ENSBGRG00000002453)	ENSBGRG00000002441	CTNNAL1 (ENSBGRG00000002316)	ABITRAM (ENSBGRG00000002250)	ELP1 (ENSBGRG00000002162)	ACTL7A (ENSBGRG00000002145)	ACTL7B (ENSBGRG00000002132)	ENSBGRG00000002114	KLF4 (ENSBGRG00000002035)	RAD23B (ENSBGRG00000001998)	ZNF462 (ENSBGRG00000001958)	ENSBGRG00000001952	TMEM38B (ENSBGRG00000001913)	ENSBGRG00000001899 #22	FKTN (ENSBGRG00000001805)	ENSBGRG00000001787	FSD1L (ENSBGRG00000001636)	ENSBGRG00000001591	ENSBGRG00000001583	SLC44A1 (ENSBGRG00000001497)	ABCA1 (ENSBGRG00000001141)	NIPSNAP3A (ENSBGRG00000001092)	ENSBGRG00000001083	OR13C8 (ENSBGRG00000001076)	OR13C3 (ENSBGRG00000001066)	OR13C4 (ENSBGRG00000001044)	ENSBGRG00000001033	ENSBGRG00000001027	SMC2 (ENSBGRG00000000950)
American bison	MODERN SPECIES	3104	PTPN3 (ENSBBBG00000023027)	ENSBBBG00000023041	EPB41L4B (ENSBBBG00000023101)	FRRS1L (ENSBBBG00000023138)	TMEM245 (ENSBBBG00000023171)	CTNNAL1 (ENSBBBG00000000468)	ABITRAM (ENSBBBG00000000448)	ELP1 (ENSBBBG00000000354)	ACTL7A (ENSBBBG00000000336)	ACTL7B (ENSBBBG00000000332)	ENSBBBG00000000324	ENSBBBG00000023186	ENSBBBG00000023200	ZNF462 (ENSBBBG00000006087)	TMEM38B (ENSBBBG00000023293)	ENSBBBG00000023309 #22	TAL2 (ENSBBBG00000006095)	FKTN (ENSBBBG00000007481)	FSD1L (ENSBBBG00000023460)	SLC44A1 (ENSBBBG00000023558)	ABCA1 (ENSBBBG00000023632)	NIPSNAP3A (ENSBBBG00000006177)	ENSBBBG00000023654	OR13C8 (ENSBBBG00000023657)	ENSBBBG00000006179	OR13C3 (ENSBBBG00000023662)	ENSBBBG00000023683	ENSBBBG00000023685	ENSBBBG00000023689	ENSBBBG00000023693	OR13C4 (ENSBBBG00000023697)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000000703.h.wb.b #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.ub.a #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.c.a	ENSGT00940000165308.c.b	ENSGT00980000199376.a
Rambouillet Sheep	MODERN SPECIES	21	NDST1 (ENSOARG00020013489) #7	ENSOARG00020013429 #8	ENSOARG00020013258 #9	TCOF1 (ENSOARG00020012742) #10	ARSI (ENSOARG00020012667) #11	CAMK2A (ENSOARG00020012100) #12	SLC6A7 (ENSOARG00020011935) #13	CDX1 (ENSOARG00020011893) #14	PDGFRB (ENSOARG00020011812) #15	CSF1R (ENSOARG00020011611) #16	HMGXB3 (ENSOARG00020011388) #17	SLC26A2 (ENSOARG00020011309) #18	PDE6A (ENSOARG00020010736) #19	PPARGC1B (ENSOARG00020010324) #20	ARHGEF37 (ENSOARG00020010150) #21	ENSOARG00020009902 #22	IL17B (ENSOARG00020009839) #23	PCYOX1L (ENSOARG00020009821) #24	GRPEL2 (ENSOARG00020024427) #25	AFAP1L1 (ENSOARG00020024308) #26	ABLIM3 (ENSOARG00020023876) #27	SH3TC2 (ENSOARG00020023787) #28	ADRB2 (ENSOARG00020023772) #29	HTR4 (ENSOARG00020023572) #30	FBXO38 (ENSOARG00020023455) #31	ENSOARG00020023389	SPINK7 (ENSOARG00020023362) #34	SPINK13 (ENSOARG00020023348) #35	ENSOARG00020023322	ENSOARG00020023292	ENSOARG00020023278
Goat	MODERN SPECIES	26	ENSCHIG00000012469 #8	CD74 (ENSCHIG00000014130) #9	TCOF1 (ENSCHIG00000007887) #10	ARSI (ENSCHIG00000006882) #11	CAMK2A (ENSCHIG00000025051) #12	SLC6A7 (ENSCHIG00000022198) #13	CDX1 (ENSCHIG00000022811) #14	PDGFRB (ENSCHIG00000024821) #15	CSF1R (ENSCHIG00000026731) #16	HMGXB3 (ENSCHIG00000011628) #17	TIGD6 (ENSCHIG00000026767)	SLC26A2 (ENSCHIG00000012265) #18	PDE6A (ENSCHIG00000017922) #19	PPARGC1B (ENSCHIG00000004409) #20	ARHGEF37 (ENSCHIG00000025128) #21	ENSCHIG00000012892 #22	IL17B (ENSCHIG00000026913) #23	PCYOX1L (ENSCHIG00000022991) #24	GRPEL2 (ENSCHIG00000026744) #25	AFAP1L1 (ENSCHIG00000003854) #26	ABLIM3 (ENSCHIG00000021812) #27	SH3TC2 (ENSCHIG00000015736) #28	HTR4 (ENSCHIG00000022715) #30	FBXO38 (ENSCHIG00000026135) #31	ENSCHIG00000016093	SPINK9 (ENSCHIG00000013135)	SPINK7 (ENSCHIG00000013983) #34	ENSCHIG00000025526	ENSCHIG00000018387	ENSCHIG00000015048	SPINK6 (ENSCHIG00000020018)
Siberian musk deer	MODERN SPECIES	174	ENSMMSG00000002542	ANKRD46 (ENSMMSG00000002557)	SNX31 (ENSMMSG00000002585)	PABPC1 (ENSMMSG00000002644)	YWHAZ (ENSMMSG00000002669)	ENSMMSG00000002702	ENSMMSG00000002708	GRHL2 (ENSMMSG00000002727)	NCALD (ENSMMSG00000002766)	ENSMMSG00000002782	RRM2B (ENSMMSG00000002803)	UBR5 (ENSMMSG00000002891)	ODF1 (ENSMMSG00000002925)	KLF10 (ENSMMSG00000002939)	ENSMMSG00000002956	ENSMMSG00000002969 #22	ATP6V1C1 (ENSMMSG00000003000)	ENSMMSG00000003059	ENSMMSG00000003072	FZD6 (ENSMMSG00000003091)	CTHRC1 (ENSMMSG00000003118)	SLC25A32 (ENSMMSG00000003130)	DCAF13 (ENSMMSG00000003163)	RIMS2 (ENSMMSG00000003277)	ENSMMSG00000004272	ENSMMSG00000004276	DPYS (ENSMMSG00000005767)	ENSMMSG00000005805	LRP12 (ENSMMSG00000005834)
Yarkand deer	MODERN SPECIES	32	RPS14 (ENSCHYG00000005605) #8	ENSCHYG00000005598	CD74 (ENSCHYG00000005571) #9	TCOF1 (ENSCHYG00000004939) #10	ARSI (ENSCHYG00000004887) #11	CAMK2A (ENSCHYG00000004518) #12	SLC6A7 (ENSCHYG00000004421) #13	CDX1 (ENSCHYG00000004360) #14	PDGFRB (ENSCHYG00000004180) #15	CSF1R (ENSCHYG00000004143) #16	HMGXB3 (ENSCHYG00000004053) #17	SLC26A2 (ENSCHYG00000004031) #18	PDE6A (ENSCHYG00000003974) #19	PPARGC1B (ENSCHYG00000003895) #20	ARHGEF37 (ENSCHYG00000003829) #21	ENSCHYG00000003774 #22	IL17B (ENSCHYG00000003726) #23	PCYOX1L (ENSCHYG00000003705) #24	GRPEL2 (ENSCHYG00000003657) #25	AFAP1L1 (ENSCHYG00000003583) #26	ABLIM3 (ENSCHYG00000003490) #27	SH3TC2 (ENSCHYG00000003366) #28	ADRB2 (ENSCHYG00000003348) #29	HTR4 (ENSCHYG00000003272) #30	FBXO38 (ENSCHYG00000003111) #31	SPINK9 (ENSCHYG00000003036)	SPINK7 (ENSCHYG00000003021) #34	SPINK13 (ENSCHYG00000003006) #35	ENSCHYG00000002996	ENSCHYG00000002989	ENSCHYG00000002981
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	27	ENSGT00940000161156	ENSGT00940000153941.a.b	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000153700.ub.b.a #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Percora_a	ANCESTRAL SPECIES	22	ENSGT00940000161156	ENSGT00940000153941.a.b	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000153700.ub.b.a #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Bovidae	ANCESTRAL SPECIES	23	ENSGT00940000153941.a.b	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993	ENSGT00940000153700.ub.b.a #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.a.a #22
Goat	MODERN SPECIES	254																ENSCHIG00000018725 #22
Rambouillet Sheep	MODERN SPECIES	205	RGN (ENSOARG00020019060)	ENSOARG00020019006	RBM10 (ENSOARG00020018579)	UBA1 (ENSOARG00020016608)	USP11 (ENSOARG00020016144)	ZNF157 (ENSOARG00020016073)	ZNF41 (ENSOARG00020016031)	ARAF (ENSOARG00020015667)	TIMP1 (ENSOARG00020015544)	SYN1 (ENSOARG00020015450)	CFP (ENSOARG00020022040)	ELK1 (ENSOARG00020021985)	UXT (ENSOARG00020021935)	ENSOARG00020021917 #22	ENSOARG00020021900 #22	ENSOARG00020021854 #22	ZNF81 (ENSOARG00020021768)	ZNF182 (ENSOARG00020021721)	ENSOARG00020021683	ENSOARG00020021616	ENSOARG00020021587	SLC38A5 (ENSOARG00020021490)	FTSJ1 (ENSOARG00020021373)	PORCN (ENSOARG00020020147)	EBP (ENSOARG00020020086)	TBC1D25 (ENSOARG00020020035)	RBM3 (ENSOARG00020019997)	WDR13 (ENSOARG00020019947)	WAS (ENSOARG00020019858)	SUV39H1 (ENSOARG00020019775)	GLOD5 (ENSOARG00020019731)
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.a.b #22
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	205	TEX11 (ENSOARG00020022951)	DLG3 (ENSOARG00020022301)	KIF4A (ENSOARG00020022063)	PDZD11 (ENSOARG00020022029)	ARR3 (ENSOARG00020021819)	P2RY4 (ENSOARG00020021790)	ENSOARG00020021633	OTUD6A (ENSOARG00020021612)	EDA (ENSOARG00020021437)	NALF2 (ENSOARG00020021401)	EFNB1 (ENSOARG00020021287)	STARD8 (ENSOARG00020021176)	YIPF6 (ENSOARG00020021042)	OPHN1 (ENSOARG00020020275)	ENSOARG00020020194	ENSOARG00020020168 #22	AR (ENSOARG00020019886)	ENSOARG00020019836	ENSOARG00020019814	ENSOARG00020019802	ENSOARG00020019764	EDA2R (ENSOARG00020019617)	ENSOARG00020019579	ENSOARG00020019548	CHST7 (ENSOARG00020019529)	SLC9A7 (ENSOARG00020019314)	ENSOARG00020019283	RP2 (ENSOARG00020019259)	JADE3 (ENSOARG00020019181)	RGN (ENSOARG00020019060)	ENSOARG00020019006
Rambouillet Sheep	MODERN SPECIES	205	SUV39H1 (ENSOARG00020019775)	WAS (ENSOARG00020019858)	WDR13 (ENSOARG00020019947)	RBM3 (ENSOARG00020019997)	TBC1D25 (ENSOARG00020020035)	EBP (ENSOARG00020020086)	PORCN (ENSOARG00020020147)	FTSJ1 (ENSOARG00020021373)	SLC38A5 (ENSOARG00020021490)	ENSOARG00020021587	ENSOARG00020021616	ENSOARG00020021683	ZNF182 (ENSOARG00020021721)	ZNF81 (ENSOARG00020021768)	ENSOARG00020021854 #22	ENSOARG00020021900 #22	ENSOARG00020021917 #22	UXT (ENSOARG00020021935)	ELK1 (ENSOARG00020021985)	CFP (ENSOARG00020022040)	SYN1 (ENSOARG00020015450)	TIMP1 (ENSOARG00020015544)	ARAF (ENSOARG00020015667)	ZNF41 (ENSOARG00020016031)	ZNF157 (ENSOARG00020016073)	USP11 (ENSOARG00020016144)	UBA1 (ENSOARG00020016608)	RBM10 (ENSOARG00020018579)	ENSOARG00020019006	RGN (ENSOARG00020019060)	JADE3 (ENSOARG00020019181)
Goat	MODERN SPECIES	29	ENSCHIG00000025979	SMC1A (ENSCHIG00000008648)	ENSCHIG00000016672	ENSCHIG00000011389	ENSCHIG00000017837	FGD1 (ENSCHIG00000006298)	MAOB (ENSCHIG00000024619)	ZC3H12B (ENSCHIG00000011723)	LAS1L (ENSCHIG00000017380)	ENSCHIG00000013252	MSN (ENSCHIG00000012943)	VSIG4 (ENSCHIG00000013297)	GATA1 (ENSCHIG00000008990)	GLOD5 (ENSCHIG00000024585)	KDM5C (ENSCHIG00000012598)	ENSCHIG00000012232 #22	ENSCHIG00000006646	UXT (ENSCHIG00000021674)	ELK1 (ENSCHIG00000010062)	CFP (ENSCHIG00000020966)	TIMP1 (ENSCHIG00000010055)	SYN1 (ENSCHIG00000009868)	ARAF (ENSCHIG00000022672)	ZNF41 (ENSCHIG00000009772)	ZNF157 (ENSCHIG00000018961)	ENSCHIG00000010361	ENSCHIG00000017437	CDK16 (ENSCHIG00000014350)	UBA1 (ENSCHIG00000021389)	RBM10 (ENSCHIG00000000855)	ENSCHIG00000011438
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	38	ENSGT00940000160063	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995
American bison	DUPLICATION
American bison	MODERN SPECIES	1526																ENSBBBG00000022892 #22
American bison	MODERN SPECIES	3373																ENSBBBG00000003871 #22	GAS2L3 (ENSBBBG00000015577)	NR1H4 (ENSBBBG00000003455)	SLC17A8 (ENSBBBG00000015632)	SCYL2 (ENSBBBG00000003913)	ENSBBBG00000015721	BLTP3B (ENSBBBG00000015769)	ENSBBBG00000015782	ANKS1B (ENSBBBG00000016259)	APAF1 (ENSBBBG00000016661)	IKBIP (ENSBBBG00000016711)	SLC25A3 (ENSBBBG00000016783)	ENSBBBG00000016934	ENSBBBG00000016945	ENSBBBG00000016958	ENSBBBG00000017018
Bos	ANCESTRAL SPECIES	30	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000153524.b.a.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000168767.a
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	315	RP2 (ENSBIXG00005029507)	JADE3 (ENSBIXG00005029486)	ENSBIXG00005029464	RGN (ENSBIXG00005029422)	NDUFB11 (ENSBIXG00005029404)	RBM10 (ENSBIXG00005029281)	UBA1 (ENSBIXG00005008253)	ZNF157 (ENSBIXG00005008360)	ZNF41 (ENSBIXG00005008374)	USP11 (ENSBIXG00005008460)	ARAF (ENSBIXG00005008555)	SYN1 (ENSBIXG00005008606)	ELK1 (ENSBIXG00005008656)	UXT (ENSBIXG00005008686)	ENSBIXG00005008699 #22	ENSBIXG00005008714 #22	ENSBIXG00005006086	ENSBIXG00005000260	ZNF81 (ENSBIXG00005008791)	ZNF182 (ENSBIXG00005008809)	ENSBIXG00005008829	ENSBIXG00005008850	ENSBIXG00005000308	SLC38A5 (ENSBIXG00005008903)	FTSJ1 (ENSBIXG00005008955)	PORCN (ENSBIXG00005009012)	EBP (ENSBIXG00005006089)	ENSBIXG00005009063	TBC1D25 (ENSBIXG00005009079)	ENSBIXG00005009118	WDR13 (ENSBIXG00005009138)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005009118	TBC1D25 (ENSBIXG00005009079)	ENSBIXG00005009063	EBP (ENSBIXG00005006089)	PORCN (ENSBIXG00005009012)	FTSJ1 (ENSBIXG00005008955)	SLC38A5 (ENSBIXG00005008903)	ENSBIXG00005000308	ENSBIXG00005008850	ENSBIXG00005008829	ZNF182 (ENSBIXG00005008809)	ZNF81 (ENSBIXG00005008791)	ENSBIXG00005000260	ENSBIXG00005006086	ENSBIXG00005008714 #22	ENSBIXG00005008699 #22	UXT (ENSBIXG00005008686)	ELK1 (ENSBIXG00005008656)	SYN1 (ENSBIXG00005008606)	ARAF (ENSBIXG00005008555)	USP11 (ENSBIXG00005008460)	ZNF41 (ENSBIXG00005008374)	ZNF157 (ENSBIXG00005008360)	UBA1 (ENSBIXG00005008253)	RBM10 (ENSBIXG00005029281)	NDUFB11 (ENSBIXG00005029404)	RGN (ENSBIXG00005029422)	ENSBIXG00005029464	JADE3 (ENSBIXG00005029486)	RP2 (ENSBIXG00005029507)	SLC9A7 (ENSBIXG00005029547)
Cow	MODERN SPECIES	177	WDR13 (ENSBTAG00000018060)	RBM3 (ENSBTAG00000025848)	ENSBTAG00000051063	TBC1D25 (ENSBTAG00000009288)	EBP (ENSBTAG00000009287)	PORCN (ENSBTAG00000009282)	FTSJ1 (ENSBTAG00000031829)	SLC38A5 (ENSBTAG00000011854)	SSX5 (ENSBTAG00000048817)	ENSBTAG00000054604	SPACA5 (ENSBTAG00000046069)	ZNF182 (ENSBTAG00000046774)	ENSBTAG00000017660	ENSBTAG00000047194	ZNF81 (ENSBTAG00000005866)	ENSBTAG00000039285 #22	CSNK1B (ENSBTAG00000039794) #22	UXT (ENSBTAG00000015820)	ELK1 (ENSBTAG00000015817)	CFP (ENSBTAG00000015815)	ENSBTAG00000052214	SYN1 (ENSBTAG00000005042)	ARAF (ENSBTAG00000005039)	ZNF41 (ENSBTAG00000002113)	ZNF157 (ENSBTAG00000038589)	USP11 (ENSBTAG00000016772)	CDK16 (ENSBTAG00000016769)	UBA1 (ENSBTAG00000016764)	RBM10 (ENSBTAG00000002890)	NDUFB11 (ENSBTAG00000051287)	RGN (ENSBTAG00000046155)
Bos_a	ANCESTRAL SPECIES	26	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995
Domestic yak	MODERN SPECIES	69	WAS (ENSBGRG00000019207)	WDR13 (ENSBGRG00000019030)	ENSBGRG00000018988	TBC1D25 (ENSBGRG00000018856)	EBP (ENSBGRG00000018809)	PORCN (ENSBGRG00000018078)	FTSJ1 (ENSBGRG00000017760)	SLC38A5 (ENSBGRG00000017235)	ENSBGRG00000017186	ENSBGRG00000017067	ENSBGRG00000016947	ENSBGRG00000016915	ZNF182 (ENSBGRG00000016702)	ENSBGRG00000016683	ENSBGRG00000016643	ENSBGRG00000016619 #22	ENSBGRG00000016563 #22	UXT (ENSBGRG00000016358)	ENSBGRG00000016328	ENSBGRG00000016289	CFP (ENSBGRG00000016091)	TIMP1 (ENSBGRG00000015795)	SYN1 (ENSBGRG00000015712)	ARAF (ENSBGRG00000015517)	ZNF41 (ENSBGRG00000015259)	ENSBGRG00000015200	ENSBGRG00000014621	CDK16 (ENSBGRG00000013811)	UBA1 (ENSBGRG00000013460)	RBM10 (ENSBGRG00000011021)	NDUFB11 (ENSBGRG00000010871)
Wild yak	MODERN SPECIES	2597																ENSBMUG00000003241 #22
Bovinae	ANCESTRAL SPECIES	38	ENSGT00730000110895.b.b	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Bos	ANCESTRAL SPECIES	30	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Bos_a	ANCESTRAL SPECIES	26	ENSGT00940000153634.a	ENSGT00940000153524.b.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161081	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000158722
Wild yak	MODERN SPECIES	3120																ENSBMUG00000009538 #22
Domestic yak	MODERN SPECIES	69	WDR13 (ENSBGRG00000019030)	ENSBGRG00000018988	TBC1D25 (ENSBGRG00000018856)	EBP (ENSBGRG00000018809)	PORCN (ENSBGRG00000018078)	FTSJ1 (ENSBGRG00000017760)	SLC38A5 (ENSBGRG00000017235)	ENSBGRG00000017186	ENSBGRG00000017067	ENSBGRG00000016947	ENSBGRG00000016915	ZNF182 (ENSBGRG00000016702)	ENSBGRG00000016683	ENSBGRG00000016643	ENSBGRG00000016619 #22	ENSBGRG00000016563 #22	UXT (ENSBGRG00000016358)	ENSBGRG00000016328	ENSBGRG00000016289	CFP (ENSBGRG00000016091)	TIMP1 (ENSBGRG00000015795)	SYN1 (ENSBGRG00000015712)	ARAF (ENSBGRG00000015517)	ZNF41 (ENSBGRG00000015259)	ENSBGRG00000015200	ENSBGRG00000014621	CDK16 (ENSBGRG00000013811)	UBA1 (ENSBGRG00000013460)	RBM10 (ENSBGRG00000011021)	NDUFB11 (ENSBGRG00000010871)	RGN (ENSBGRG00000010764)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000153524.b.b	ENSGT00940000153524.b.a.b	ENSGT00940000159173	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00530000063715.a	ENSGT01030000234564.a.a.b.a	ENSGT00730000111146.db.a	ENSGT00940000161233	ENSGT00390000012484.l	ENSGT00390000012484.k	ENSGT00940000162205	ENSGT00940000162614	ENSGT00940000162553	ENSGT00940000164993.e	ENSGT00940000153700.ub.b.a.c #22	ENSGT00940000153700.ub.b.a.d #22	ENSGT00390000018078	ENSGT00940000157571	ENSGT00940000161209	ENSGT00940000161978	ENSGT00940000159633	ENSGT00940000163107	ENSGT00940000162890	ENSGT00940000160485.c	ENSGT00940000156963.a.b	ENSGT00940000158975	ENSGT00940000160369	ENSGT00390000003022	ENSGT00390000014995	ENSGT00940000168767.a	ENSGT00940000158722
Hybrid Bos Indicus	MODERN SPECIES	72															ENSBIXG00005007603	ENSBIXG00005005015 #22
Cow	MODERN SPECIES	177	RBM3 (ENSBTAG00000025848)	ENSBTAG00000051063	TBC1D25 (ENSBTAG00000009288)	EBP (ENSBTAG00000009287)	PORCN (ENSBTAG00000009282)	FTSJ1 (ENSBTAG00000031829)	SLC38A5 (ENSBTAG00000011854)	SSX5 (ENSBTAG00000048817)	ENSBTAG00000054604	SPACA5 (ENSBTAG00000046069)	ZNF182 (ENSBTAG00000046774)	ENSBTAG00000017660	ENSBTAG00000047194	ZNF81 (ENSBTAG00000005866)	ENSBTAG00000039285 #22	CSNK1B (ENSBTAG00000039794) #22	UXT (ENSBTAG00000015820)	ELK1 (ENSBTAG00000015817)	CFP (ENSBTAG00000015815)	ENSBTAG00000052214	SYN1 (ENSBTAG00000005042)	ARAF (ENSBTAG00000005039)	ZNF41 (ENSBTAG00000002113)	ZNF157 (ENSBTAG00000038589)	USP11 (ENSBTAG00000016772)	CDK16 (ENSBTAG00000016769)	UBA1 (ENSBTAG00000016764)	RBM10 (ENSBTAG00000002890)	NDUFB11 (ENSBTAG00000051287)	RGN (ENSBTAG00000046155)	ENSBTAG00000053224
Siberian musk deer	DUPLICATION
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	140														ENSMMSG00000013919 #22	ZNF81 (ENSMMSG00000013952)	ENSMMSG00000013995 #22	ENSMMSG00000014008 #22	ENSMMSG00000014027 #22	ZNF182 (ENSMMSG00000014060)	ENSMMSG00000014089	ENSMMSG00000014111	SLC38A5 (ENSMMSG00000014145)	ENSMMSG00000014231	PORCN (ENSMMSG00000014343)	EBP (ENSMMSG00000014479)	TBC1D25 (ENSMMSG00000014487)	RBM3 (ENSMMSG00000014505)	WDR13 (ENSMMSG00000014527)	WAS (ENSMMSG00000014556)	SUV39H1 (ENSMMSG00000014578)	ENSMMSG00000014613
Siberian musk deer	MODERN SPECIES	140	GATA1 (ENSMMSG00000014634)	ENSMMSG00000014613	SUV39H1 (ENSMMSG00000014578)	WAS (ENSMMSG00000014556)	WDR13 (ENSMMSG00000014527)	RBM3 (ENSMMSG00000014505)	TBC1D25 (ENSMMSG00000014487)	EBP (ENSMMSG00000014479)	PORCN (ENSMMSG00000014343)	ENSMMSG00000014231	SLC38A5 (ENSMMSG00000014145)	ENSMMSG00000014111	ENSMMSG00000014089	ZNF182 (ENSMMSG00000014060)	ENSMMSG00000014027 #22	ENSMMSG00000014008 #22	ENSMMSG00000013995 #22	ZNF81 (ENSMMSG00000013952)	ENSMMSG00000013919 #22
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	140	WAS (ENSMMSG00000014556)	WDR13 (ENSMMSG00000014527)	RBM3 (ENSMMSG00000014505)	TBC1D25 (ENSMMSG00000014487)	EBP (ENSMMSG00000014479)	PORCN (ENSMMSG00000014343)	ENSMMSG00000014231	SLC38A5 (ENSMMSG00000014145)	ENSMMSG00000014111	ENSMMSG00000014089	ZNF182 (ENSMMSG00000014060)	ENSMMSG00000014027 #22	ENSMMSG00000014008 #22	ENSMMSG00000013995 #22	ZNF81 (ENSMMSG00000013952)	ENSMMSG00000013919 #22
Siberian musk deer	MODERN SPECIES	140	HDAC6 (ENSMMSG00000014675)	GATA1 (ENSMMSG00000014634)	ENSMMSG00000014613	SUV39H1 (ENSMMSG00000014578)	WAS (ENSMMSG00000014556)	WDR13 (ENSMMSG00000014527)	RBM3 (ENSMMSG00000014505)	TBC1D25 (ENSMMSG00000014487)	EBP (ENSMMSG00000014479)	PORCN (ENSMMSG00000014343)	ENSMMSG00000014231	SLC38A5 (ENSMMSG00000014145)	ENSMMSG00000014111	ENSMMSG00000014089	ZNF182 (ENSMMSG00000014060)	ENSMMSG00000014027 #22	ENSMMSG00000014008 #22	ENSMMSG00000013995 #22	ZNF81 (ENSMMSG00000013952)	ENSMMSG00000013919 #22
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	133																ENSCHYG00000011146 #22
Yarkand deer	MODERN SPECIES	394																ENSCHYG00000021040 #22
Yarkand deer	MODERN SPECIES	120																ENSCHYG00000011483 #22
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000018195	CLCN5 (ENSCHYG00000017859)	AKAP4 (ENSCHYG00000017662)	ENSCHYG00000017636	ENSCHYG00000017487	DGKK (ENSCHYG00000017209)	ENSCHYG00000017119	SHROOM4 (ENSCHYG00000016966)	ENSCHYG00000016888	BMP15 (ENSCHYG00000016846)	ENSCHYG00000016796	ENSCHYG00000016771	ENSCHYG00000016717	GSPT2 (ENSCHYG00000016695)	MAGED1 (ENSCHYG00000016520)	ENSCHYG00000016354 #22	ENSCHYG00000016212	ELK1 (ENSCHYG00000016063)	CFP (ENSCHYG00000015864)	TIMP1 (ENSCHYG00000015815)	SYN1 (ENSCHYG00000015682)	ARAF (ENSCHYG00000015467)	ZNF41 (ENSCHYG00000015348)	ZNF157 (ENSCHYG00000015268)	ENSCHYG00000014787	ENSCHYG00000014283	UBA1 (ENSCHYG00000013713)	ENSCHYG00000013676	RBM10 (ENSCHYG00000013228)	NDUFB11 (ENSCHYG00000013137)	ENSCHYG00000013120
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.b #22
Caprinae	ANCESTRAL SPECIES	38	ENSGT00940000159149	ENSGT00940000153412.A.a.d.c	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990	ENSGT00940000162726	ENSGT00940000163081	ENSGT00940000160792	ENSGT01030000234531.A.a	ENSGT00390000007539.i.b.a	ENSGT00940000153412.B	ENSGT00940000161244	ENSGT00940000163008	ENSGT00940000162753	ENSGT00940000163042	ENSGT00940000162561	ENSGT00940000153700.ub.b.b #22	ENSGT00940000153503.a.b	ENSGT00390000008751.b	ENSGT00390000018085.a.a.a.b.b	ENSGT00940000158469	ENSGT00940000154661.b	ENSGT00940000161565	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00530000063723.b	ENSGT00940000161284	ENSGT00390000003231.a.f	ENSGT00940000161632	ENSGT00940000158987	ENSGT00940000159060
Goat	MODERN SPECIES	101																ENSCHIG00000016608 #22	ENSCHIG00000019883	GLA (ENSCHIG00000016806)
Rambouillet Sheep	MODERN SPECIES	205	TSPAN6 (ENSOARG00020018379)	SRPX2 (ENSOARG00020018342)	ENSOARG00020018301	ENSOARG00020018265	ENSOARG00020018170	GPRASP2 (ENSOARG00020018160)	ARMCX5 (ENSOARG00020018139)	ENSOARG00020018059	ENSOARG00020018010	BEX5 (ENSOARG00020017985)	ENSOARG00020017953	ARMCX2 (ENSOARG00020017486)	ARMCX3 (ENSOARG00020017472)	ARMCX6 (ENSOARG00020017453)	ARMCX1 (ENSOARG00020017430)	ENSOARG00020017411 #22	HNRNPH2 (ENSOARG00020017388)	GLA (ENSOARG00020017261)	RPL36A (ENSOARG00020017190)	BTK (ENSOARG00020016866)	TIMM8A (ENSOARG00020016826)	TAF7L (ENSOARG00020016540)	DRP2 (ENSOARG00020016136)	ENSOARG00020025227	CENPI (ENSOARG00020025192)	TMEM35A (ENSOARG00020025175)	ENSOARG00020025160	ARL13A (ENSOARG00020025147)	XKRX (ENSOARG00020025136)	NOX1 (ENSOARG00020025003)	CSTF2 (ENSOARG00020024944)
Bovinae	ANCESTRAL SPECIES	47	ENSGT00940000153412.A.a.d	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990	ENSGT00940000162726	ENSGT00940000163396	ENSGT00940000163081	ENSGT00940000160792	ENSGT01030000234531.A.a	ENSGT00940000153412.B	ENSGT00940000161244	ENSGT00390000007539.i.b.a	ENSGT00940000163008	ENSGT00940000162753	ENSGT00940000163042	ENSGT00940000162561	ENSGT00940000153700.ub.b.b #22	ENSGT00940000162587	ENSGT00940000153503.a.b	ENSGT00390000008751.b	ENSGT00390000018085.b	ENSGT00940000158469	ENSGT00940000154661.b	ENSGT00940000161565	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00940000170926	ENSGT00940000161284	ENSGT00390000003231.a.f	ENSGT00940000161632	ENSGT00940000158987
Bos	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.b #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00940000153700.ub.b.b #22
Cow	MODERN SPECIES	177	ENSBTAG00000022502	ENSBTAG00000048265	ENSBTAG00000046608	GPRASP2 (ENSBTAG00000032852)	ENSBTAG00000047213	ARMCX5 (ENSBTAG00000010114)	ENSBTAG00000020522	ENSBTAG00000027978	BEX5 (ENSBTAG00000014670)	ZMAT1 (ENSBTAG00000003601)	ENSBTAG00000005319	ARMCX2 (ENSBTAG00000019417)	ENSBTAG00000050056	ARMCX3 (ENSBTAG00000037996)	ARMCX1 (ENSBTAG00000026139)	ENSBTAG00000038204 #22	ARMCX4 (ENSBTAG00000052983)	HNRNPH2 (ENSBTAG00000007499)	GLA (ENSBTAG00000019256)	RPL36A (ENSBTAG00000019253)	BTK (ENSBTAG00000019250)	TIMM8A (ENSBTAG00000022292)	TAF7L (ENSBTAG00000001979)	DRP2 (ENSBTAG00000001975)	CENPI (ENSBTAG00000021254)	TMEM35A (ENSBTAG00000021252)	ENSBTAG00000053172	ARL13A (ENSBTAG00000020390)	XKRX (ENSBTAG00000005378)	NOX1 (ENSBTAG00000016761)	CSTF2 (ENSBTAG00000003547)
American bison	MODERN SPECIES	2121																ENSBBBG00000021450 #22
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Wild yak	MODERN SPECIES	755															TMEM38B (ENSBMUG00000011169)	ENSBMUG00000011185 #22
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000153700.vb #22
Rambouillet Sheep	MODERN SPECIES	205	WAS (ENSOARG00020019858)	WDR13 (ENSOARG00020019947)	RBM3 (ENSOARG00020019997)	TBC1D25 (ENSOARG00020020035)	EBP (ENSOARG00020020086)	PORCN (ENSOARG00020020147)	FTSJ1 (ENSOARG00020021373)	SLC38A5 (ENSOARG00020021490)	ENSOARG00020021587	ENSOARG00020021616	ENSOARG00020021683	ZNF182 (ENSOARG00020021721)	ZNF81 (ENSOARG00020021768)	ENSOARG00020021854 #22	ENSOARG00020021900 #22	ENSOARG00020021917 #22	UXT (ENSOARG00020021935)	ELK1 (ENSOARG00020021985)	CFP (ENSOARG00020022040)	SYN1 (ENSOARG00020015450)	TIMP1 (ENSOARG00020015544)	ARAF (ENSOARG00020015667)	ZNF41 (ENSOARG00020016031)	ZNF157 (ENSOARG00020016073)	USP11 (ENSOARG00020016144)	UBA1 (ENSOARG00020016608)	RBM10 (ENSOARG00020018579)	ENSOARG00020019006	RGN (ENSOARG00020019060)	JADE3 (ENSOARG00020019181)	RP2 (ENSOARG00020019259)
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871
Carnivora	ANCESTRAL SPECIES	8	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Felidae	ANCESTRAL SPECIES	6	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Tiger	MODERN SPECIES	422	NDST1 (ENSPTIG00000016596) #7	RPS14 (ENSPTIG00000015980) #8	CD74 (ENSPTIG00000015808) #9	ARSI (ENSPTIG00000006313) #11	CAMK2A (ENSPTIG00000013660) #12	SLC6A7 (ENSPTIG00000011219) #13	ENSPTIG00000010717 #14	PDGFRB (ENSPTIG00000006696) #15	CSF1R (ENSPTIG00000019258) #16	HMGXB3 (ENSPTIG00000017751) #17	TIGD6 (ENSPTIG00000006085)	SLC26A2 (ENSPTIG00000016543) #18	PDE6A (ENSPTIG00000011759) #19	PPARGC1B (ENSPTIG00000007391) #20	ARHGEF37 (ENSPTIG00000006596) #21	CSNK1A1 (ENSPTIG00000021579) #22
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
lion	MODERN SPECIES		RPS14 (ENSPLOG00000003476) #8	CD74 (ENSPLOG00000003458) #9	TCOF1 (ENSPLOG00000003215) #10	ARSI (ENSPLOG00000003058) #11	CAMK2A (ENSPLOG00000002802) #12	SLC6A7 (ENSPLOG00000002663) #13	CDX1 (ENSPLOG00000002644) #14	PDGFRB (ENSPLOG00000002606) #15	CSF1R (ENSPLOG00000002499) #16	HMGXB3 (ENSPLOG00000002456) #17	TIGD6 (ENSPLOG00000002441)	SLC26A2 (ENSPLOG00000002429) #18	PDE6A (ENSPLOG00000002368) #19	PPARGC1B (ENSPLOG00000002296) #20	ARHGEF37 (ENSPLOG00000002246) #21	CSNK1A1 (ENSPLOG00000002155) #22	IL17B (ENSPLOG00000002102) #23	PCYOX1L (ENSPLOG00000002086) #24	GRPEL2 (ENSPLOG00000002072) #25	AFAP1L1 (ENSPLOG00000002014) #26	ABLIM3 (ENSPLOG00000001844) #27	SH3TC2 (ENSPLOG00000001760) #28	ADRB2 (ENSPLOG00000001745) #29	HTR4 (ENSPLOG00000001716) #30	FBXO38 (ENSPLOG00000001656) #31	SPINK9 (ENSPLOG00000001627)	SPINK7 (ENSPLOG00000001613) #34	SPINK13 (ENSPLOG00000001600) #35	ENSPLOG00000001587	ENSPLOG00000001576	GZMK (ENSPLOG00000001565)
leopard	MODERN SPECIES	44	NDST1 (ENSPPRG00000013968) #7	RPS14 (ENSPPRG00000015556) #8	CD74 (ENSPPRG00000022361) #9	ARSI (ENSPPRG00000009868) #11	CAMK2A (ENSPPRG00000011243) #12	SLC6A7 (ENSPPRG00000012765) #13	ENSPPRG00000012982 #14	PDGFRB (ENSPPRG00000014021) #15	CSF1R (ENSPPRG00000017326) #16	HMGXB3 (ENSPPRG00000023078) #17	TIGD6 (ENSPPRG00000015925)	SLC26A2 (ENSPPRG00000022664) #18	PDE6A (ENSPPRG00000002126) #19	PPARGC1B (ENSPPRG00000004608) #20	ARHGEF37 (ENSPPRG00000005780) #21	CSNK1A1 (ENSPPRG00000007912) #22	ENSPPRG00000008114	IL17B (ENSPPRG00000008266) #23	PCYOX1L (ENSPPRG00000008748) #24	GRPEL2 (ENSPPRG00000009018) #25	AFAP1L1 (ENSPPRG00000011153) #26	ABLIM3 (ENSPPRG00000001965) #27	SH3TC2 (ENSPPRG00000003501) #28	ENSPPRG00000003693 #29	ENSPPRG00000003920 #29	HTR4 (ENSPPRG00000004837) #30	FBXO38 (ENSPPRG00000005614) #31	ENSPPRG00000006706	SPINK7 (ENSPPRG00000007094) #34	SPINK13 (ENSPPRG00000007556) #35	ENSPPRG00000007951
Cat	MODERN SPECIES		SYNPO (ENSFCAG00000002043)	NDST1 (ENSFCAG00000002041) #7	CAMK2A (ENSFCAG00000003635) #12	TCOF1 (ENSFCAG00000025754) #10	ARSI (ENSFCAG00000024271) #11	SLC6A7 (ENSFCAG00000024714) #13	CDX1 (ENSFCAG00000022723) #14	PDGFRB (ENSFCAG00000003634) #15	CSF1R (ENSFCAG00000003633) #16	HMGXB3 (ENSFCAG00000003632) #17	TIGD6 (ENSFCAG00000024582)	SLC26A2 (ENSFCAG00000026045) #18	PDE6A (ENSFCAG00000003630) #19	PPARGC1B (ENSFCAG00000003629) #20	ARHGEF37 (ENSFCAG00000003628) #21	CSNK1A1 (ENSFCAG00000031849) #22	IL17B (ENSFCAG00000003626) #23	PCYOX1L (ENSFCAG00000003625) #24	GRPEL2 (ENSFCAG00000045597) #25	AFAP1L1 (ENSFCAG00000003623) #26	ABLIM3 (ENSFCAG00000003622) #27	SH3TC2 (ENSFCAG00000007955) #28	ADRB2 (ENSFCAG00000007954) #29	HTR4 (ENSFCAG00000009931) #30	FBXO38 (ENSFCAG00000006106) #31	ENSFCAG00000047904	SPINK9 (ENSFCAG00000035030)	SPINK7 (ENSFCAG00000038097) #34	SPINK13 (ENSFCAG00000041823) #35	GZMK (ENSFCAG00000014052)	ESM1 (ENSFCAG00000031977)
Caniformia	ANCESTRAL SPECIES	5	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00940000165187	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Canidae	ANCESTRAL SPECIES	7	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00940000165187	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Canis_lupus	ANCESTRAL SPECIES	12	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00940000165187	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000165308	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000161886
Dog	MODERN SPECIES	32	RPS14 (ENSCAFG00845006753) #8	ENSCAFG00845006810	CD74 (ENSCAFG00845006874) #9	TCOF1 (ENSCAFG00845007250) #10	ARSI (ENSCAFG00845007705) #11	CAMK2A (ENSCAFG00845007828) #12	SLC6A7 (ENSCAFG00845008088) #13	CDX1 (ENSCAFG00845008164) #14	PDGFRB (ENSCAFG00845008241) #15	CSF1R (ENSCAFG00845008395) #16	HMGXB3 (ENSCAFG00845008592) #17	SLC26A2 (ENSCAFG00845008861) #18	PDE6A (ENSCAFG00845008935) #19	PPARGC1B (ENSCAFG00845009130) #20	ARHGEF37 (ENSCAFG00845009298) #21	CSNK1A1 (ENSCAFG00845009382) #22	IL17B (ENSCAFG00845009566) #23	PCYOX1L (ENSCAFG00845009623) #24	AFAP1L1 (ENSCAFG00845009783) #26	ABLIM3 (ENSCAFG00845010075) #27	SH3TC2 (ENSCAFG00845010410) #28	ADRB2 (ENSCAFG00845010580) #29	HTR4 (ENSCAFG00845010692) #30	FBXO38 (ENSCAFG00845010983) #31	ENSCAFG00845011221	SPINK9 (ENSCAFG00845011276)	SPINK7 (ENSCAFG00845011376) #34	ENSCAFG00845011407 #35	GZMK (ENSCAFG00845011436)	ESM1 (ENSCAFG00845011480)	ENSCAFG00845011529
Dingo	MODERN SPECIES	324	CD74 (ENSCAFG00020023646) #9	TCOF1 (ENSCAFG00020023637) #10	ARSI (ENSCAFG00020023634) #11	CAMK2A (ENSCAFG00020023618) #12	ENSCAFG00020023616	SLC6A7 (ENSCAFG00020023615) #13	CDX1 (ENSCAFG00020023603) #14	PDGFRB (ENSCAFG00020023594) #15	CSF1R (ENSCAFG00020023585) #16	HMGXB3 (ENSCAFG00020023583) #17	TIGD6 (ENSCAFG00020023582)	SLC26A2 (ENSCAFG00020023581) #18	PDE6A (ENSCAFG00020023546) #19	PPARGC1B (ENSCAFG00020023524) #20	ARHGEF37 (ENSCAFG00020023512) #21	CSNK1A1 (ENSCAFG00020023507) #22	IL17B (ENSCAFG00020023501) #23	PCYOX1L (ENSCAFG00020023499) #24	GRPEL2 (ENSCAFG00020023496) #25	AFAP1L1 (ENSCAFG00020023491) #26	ABLIM3 (ENSCAFG00020023480) #27	ENSCAFG00020023475	SH3TC2 (ENSCAFG00020023464) #28	ADRB2 (ENSCAFG00020023459) #29	HTR4 (ENSCAFG00020023454) #30	FBXO38 (ENSCAFG00020023380) #31	SPINK7 (ENSCAFG00020023362) #34	GZMK (ENSCAFG00020023353)	ESM1 (ENSCAFG00020023350)	ENSCAFG00020023347	ENSCAFG00020023344
Red fox	MODERN SPECIES	2	RPS14 (ENSVVUG00000007262) #8	CD74 (ENSVVUG00000007268) #9	TCOF1 (ENSVVUG00000007298) #10	ARSI (ENSVVUG00000007357) #11	CAMK2A (ENSVVUG00000007418) #12	SLC6A7 (ENSVVUG00000007422) #13	ENSVVUG00000007438 #14	PDGFRB (ENSVVUG00000007442) #15	CSF1R (ENSVVUG00000007458) #16	HMGXB3 (ENSVVUG00000007485) #17	TIGD6 (ENSVVUG00000007540)	SLC26A2 (ENSVVUG00000007543) #18	PDE6A (ENSVVUG00000007855) #19	PPARGC1B (ENSVVUG00000014358) #20	ARHGEF37 (ENSVVUG00000014383) #21	CSNK1A1 (ENSVVUG00000014391) #22	IL17B (ENSVVUG00000014402) #23	PCYOX1L (ENSVVUG00000014404) #24	GRPEL2 (ENSVVUG00000014408) #25	AFAP1L1 (ENSVVUG00000014410) #26	ABLIM3 (ENSVVUG00000014418) #27	ENSVVUG00000014427	SH3TC2 (ENSVVUG00000014444) #28	ADRB2 (ENSVVUG00000014517) #29	HTR4 (ENSVVUG00000014538) #30	FBXO38 (ENSVVUG00000014567) #31	SPINK9 (ENSVVUG00000014579)	SPINK7 (ENSVVUG00000014584) #34	ENSVVUG00000014599	GZMK (ENSVVUG00000014607)	ESM1 (ENSVVUG00000014614)
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00940000165187	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
Mustelinae	ANCESTRAL SPECIES	13	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00940000165187	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00860000135710 #33	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00940000161886
American mink	MODERN SPECIES	18	ENSNVIG00000000207 #8	CD74 (ENSNVIG00000000261) #9	TCOF1 (ENSNVIG00000000370) #10	ARSI (ENSNVIG00000000989) #11	CAMK2A (ENSNVIG00000001006) #12	SLC6A7 (ENSNVIG00000001070) #13	CDX1 (ENSNVIG00000001149) #14	PDGFRB (ENSNVIG00000001164) #15	CSF1R (ENSNVIG00000001216) #16	HMGXB3 (ENSNVIG00000001274) #17	TIGD6 (ENSNVIG00000001345)	SLC26A2 (ENSNVIG00000001354) #18	PDE6A (ENSNVIG00000001368) #19	PPARGC1B (ENSNVIG00000001480) #20	ARHGEF37 (ENSNVIG00000001518) #21	CSNK1A1 (ENSNVIG00000001545) #22	IL17B (ENSNVIG00000001722) #23	PCYOX1L (ENSNVIG00000001740) #24	GRPEL2 (ENSNVIG00000001766) #25	AFAP1L1 (ENSNVIG00000001811) #26	ABLIM3 (ENSNVIG00000001879) #27	ENSNVIG00000002115	SH3TC2 (ENSNVIG00000002135) #28	ADRB2 (ENSNVIG00000002179) #29	HTR4 (ENSNVIG00000002194) #30	FBXO38 (ENSNVIG00000002255) #31	ENSNVIG00000002321	SPINK7 (ENSNVIG00000002330) #34	ENSNVIG00000002339 #35	ENSNVIG00000002344	GZMK (ENSNVIG00000002350)
Ferret	MODERN SPECIES	162	ENSMPUG00000013776 #8	CD74 (ENSMPUG00000013786) #9	ENSMPUG00000013791 #10	ARSI (ENSMPUG00000013841) #11	CAMK2A (ENSMPUG00000013844) #12	SLC6A7 (ENSMPUG00000013975) #13	CDX1 (ENSMPUG00000013978) #14	PDGFRB (ENSMPUG00000013990) #15	CSF1R (ENSMPUG00000013999) #16	HMGXB3 (ENSMPUG00000014009) #17	TIGD6 (ENSMPUG00000019320)	SLC26A2 (ENSMPUG00000014113) #18	PDE6A (ENSMPUG00000014122) #19	PPARGC1B (ENSMPUG00000014245) #20	ARHGEF37 (ENSMPUG00000014249) #21	CSNK1A1 (ENSMPUG00000014255) #22	IL17B (ENSMPUG00000014258) #23	PCYOX1L (ENSMPUG00000014263) #24	GRPEL2 (ENSMPUG00000014268) #25	AFAP1L1 (ENSMPUG00000014272) #26	ABLIM3 (ENSMPUG00000014280) #27	ENSMPUG00000014282	SH3TC2 (ENSMPUG00000014283) #28	ADRB2 (ENSMPUG00000014292) #29	ENSMPUG00000014294	HTR4 (ENSMPUG00000014297) #30	FBXO38 (ENSMPUG00000014300) #31	ENSMPUG00000014304 #33	ENSMPUG00000014307	SPINK7 (ENSMPUG00000014310) #34	GZMK (ENSMPUG00000014312)
Ursidae	ANCESTRAL SPECIES	24	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00910000147883	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b.d #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000165308	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000161886	ENSGT00390000018810
Ursus	ANCESTRAL SPECIES	10	ENSGT00390000008961.h #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000159769.a.b	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a.c #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b.d #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00940000165308	ENSGT00940000166334	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00940000161886	ENSGT00390000018810
American black bear	MODERN SPECIES	3137																CSNK1A1 (ENSUAMG00000019595) #22	IL17B (ENSUAMG00000019597) #23	PCYOX1L (ENSUAMG00000019599) #24	GRPEL2 (ENSUAMG00000019600) #25	AFAP1L1 (ENSUAMG00000019613) #26
Polar bear	MODERN SPECIES	179	RPS14 (ENSUMAG00000003973) #8	CD74 (ENSUMAG00000003979) #9	TCOF1 (ENSUMAG00000004013) #10	ARSI (ENSUMAG00000004091) #11	ENSUMAG00000004106 #12	ENSUMAG00000004228	SLC6A7 (ENSUMAG00000004279) #13	PDGFRB (ENSUMAG00000004358) #15	CSF1R (ENSUMAG00000004783) #16	HMGXB3 (ENSUMAG00000004789) #17	TIGD6 (ENSUMAG00000004793)	SLC26A2 (ENSUMAG00000004796) #18	PDE6A (ENSUMAG00000004883) #19	PPARGC1B (ENSUMAG00000005361) #20	ARHGEF37 (ENSUMAG00000005379) #21	CSNK1A1 (ENSUMAG00000005410) #22	IL17B (ENSUMAG00000005420) #23	PCYOX1L (ENSUMAG00000005426) #24	GRPEL2 (ENSUMAG00000005433) #25	AFAP1L1 (ENSUMAG00000005437) #26	ABLIM3 (ENSUMAG00000005443) #27	SH3TC2 (ENSUMAG00000005460) #28	ADRB2 (ENSUMAG00000005490) #29	HTR4 (ENSUMAG00000005494) #30	FBXO38 (ENSUMAG00000005518) #31	ENSUMAG00000005667	SPINK9 (ENSUMAG00000005675)	SPINK7 (ENSUMAG00000005677) #34	GZMK (ENSUMAG00000005679)	ESM1 (ENSUMAG00000005681)	HSPB3 (ENSUMAG00000005699)
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1907																ENSAMEG00000027498 #22
Giant Panda	MODERN SPECIES	13	RPS14 (ENSAMEG00000004654) #9	TCOF1 (ENSAMEG00000004673) #10	ARSI (ENSAMEG00000004746) #11	CAMK2A (ENSAMEG00000026130) #12	SLC6A7 (ENSAMEG00000004844) #13	ENSAMEG00000028629	CDX1 (ENSAMEG00000031327) #14	PDGFRB (ENSAMEG00000004961) #15	CSF1R (ENSAMEG00000005060) #16	HMGXB3 (ENSAMEG00000005161) #17	TIGD6 (ENSAMEG00000020121)	SLC26A2 (ENSAMEG00000005206) #18	PDE6A (ENSAMEG00000005215) #19	PPARGC1B (ENSAMEG00000005287) #20	ARHGEF37 (ENSAMEG00000005310) #21	CSNK1A1 (ENSAMEG00000005335) #22	IL17B (ENSAMEG00000027431) #23	PCYOX1L (ENSAMEG00000005410) #24	GRPEL2 (ENSAMEG00000029514) #25	AFAP1L1 (ENSAMEG00000005448) #26	ABLIM3 (ENSAMEG00000005476) #27	ENSAMEG00000028219	SH3TC2 (ENSAMEG00000005533) #28	ADRB2 (ENSAMEG00000020122) #29	HTR4 (ENSAMEG00000001144) #30	FBXO38 (ENSAMEG00000001149) #31	SPINK9 (ENSAMEG00000031483)	SPINK7 (ENSAMEG00000024511) #34	ENSAMEG00000019196 #35	ENSAMEG00000012805	ESM1 (ENSAMEG00000024413)
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00900000141664
Equus	ANCESTRAL SPECIES	6	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT00530000064312	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308.g.b.a.b	ENSGT00940000165308.g.a.a	ENSGT00940000165308.h
Donkey	MODERN SPECIES	29	ENSEASG00005002733 #8	CD74 (ENSEASG00005002735) #9	TCOF1 (ENSEASG00005002741) #10	ARSI (ENSEASG00005002748) #11	CAMK2A (ENSEASG00005002750) #12	SLC6A7 (ENSEASG00005002754) #13	CDX1 (ENSEASG00005002759) #14	PDGFRB (ENSEASG00005002763) #15	CSF1R (ENSEASG00005002767) #16	HMGXB3 (ENSEASG00005002772) #17	TIGD6 (ENSEASG00005034038)	SLC26A2 (ENSEASG00005002777) #18	PDE6A (ENSEASG00005002786) #19	PPARGC1B (ENSEASG00005002826) #20	ARHGEF37 (ENSEASG00005002843) #21	CSNK1A1 (ENSEASG00005002855) #22	IL17B (ENSEASG00005034663) #23	PCYOX1L (ENSEASG00005002869) #24	GRPEL2 (ENSEASG00005029186) #25	AFAP1L1 (ENSEASG00005002876) #26	ABLIM3 (ENSEASG00005002886) #27	SH3TC2 (ENSEASG00005002925) #28	ADRB2 (ENSEASG00005035523) #29	HTR4 (ENSEASG00005002941) #30	FBXO38 (ENSEASG00005002952) #31	SPINK9 (ENSEASG00005026461)	SPINK7 (ENSEASG00005031369) #34	ENSEASG00005027718 #35	ENSEASG00005024880	ENSEASG00005004576	HAPLN1 (ENSEASG00005004559)
Horse	MODERN SPECIES	5	RPS14 (ENSECAG00000024336) #8	CD74 (ENSECAG00000008503) #9	TCOF1 (ENSECAG00000014261) #10	ARSI (ENSECAG00000004586) #11	CAMK2A (ENSECAG00000019790) #12	SLC6A7 (ENSECAG00000011225) #13	CDX1 (ENSECAG00000024772) #14	PDGFRB (ENSECAG00000024793) #15	CSF1R (ENSECAG00000000860) #16	HMGXB3 (ENSECAG00000015743) #17	TIGD6 (ENSECAG00000004664)	SLC26A2 (ENSECAG00000023363) #18	PDE6A (ENSECAG00000024028) #19	PPARGC1B (ENSECAG00000019769) #20	ARHGEF37 (ENSECAG00000022738) #21	CSNK1A1 (ENSECAG00000004882) #22	IL17B (ENSECAG00000006456) #23	PCYOX1L (ENSECAG00000007083) #24	GRPEL2 (ENSECAG00000009449) #25	AFAP1L1 (ENSECAG00000010738) #26	ABLIM3 (ENSECAG00000016129) #27	SH3TC2 (ENSECAG00000009311) #28	ADRB2 (ENSECAG00000004810) #29	HTR4 (ENSECAG00000013365) #30	FBXO38 (ENSECAG00000016193) #31	SPINK9 (ENSECAG00000036703)	SPINK7 (ENSECAG00000034028) #34	ENSECAG00000028172 #35	ENSECAG00000037084	ENSECAG00000043180	ENSECAG00000039703
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT01080000259604	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225
Megabat	MODERN SPECIES	5880															ARHGEF37 (ENSPVAG00000013378) #21	CSNK1A1 (ENSPVAG00000013380) #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000157857 #7	ENSGT00390000000703.h #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT01080000259604	ENSGT00940000161876 #34	ENSGT00400000023784 #35	ENSGT00940000165308	ENSGT00740000116871	ENSGT00530000064225
Greater horseshoe bat	MODERN SPECIES	16	NDST1 (ENSRFEG00010014641) #7	RPS14 (ENSRFEG00010014582) #8	CD74 (ENSRFEG00010014522) #9	TCOF1 (ENSRFEG00010014446) #10	ARSI (ENSRFEG00010014388) #11	CAMK2A (ENSRFEG00010014294) #12	SLC6A7 (ENSRFEG00010014080) #13	CDX1 (ENSRFEG00010014033) #14	PDGFRB (ENSRFEG00010013950) #15	CSF1R (ENSRFEG00010013869) #16	HMGXB3 (ENSRFEG00010013671) #17	SLC26A2 (ENSRFEG00010013454) #18	PDE6A (ENSRFEG00010012866) #19	PPARGC1B (ENSRFEG00010012783) #20	ARHGEF37 (ENSRFEG00010012691) #21	CSNK1A1 (ENSRFEG00010012571) #22	IL17B (ENSRFEG00010012496) #23	ENSRFEG00010012425 #24	GRPEL2 (ENSRFEG00010012346) #25	AFAP1L1 (ENSRFEG00010012253) #26	ABLIM3 (ENSRFEG00010012097) #27	SH3TC2 (ENSRFEG00010011549) #28	ADRB2 (ENSRFEG00010011504) #29	HTR4 (ENSRFEG00010011375) #30	FBXO38 (ENSRFEG00010011244) #31	ENSRFEG00010011193	SPINK7 (ENSRFEG00010011127) #34	SPINK13 (ENSRFEG00010011013) #35	ENSRFEG00010010974	MARCOL (ENSRFEG00010010923)	SPINK6 (ENSRFEG00010010858)
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1139														PPARGC1B (ENSMLUG00000013169) #20	ARHGEF37 (ENSMLUG00000012793) #21	ENSMLUG00000002910 #22	IL17B (ENSMLUG00000002907) #23	PCYOX1L (ENSMLUG00000030590) #24	GRPEL2 (ENSMLUG00000029499) #25	AFAP1L1 (ENSMLUG00000002902) #26	ABLIM3 (ENSMLUG00000001706) #27	SH3TC2 (ENSMLUG00000010270) #28	ADRB2 (ENSMLUG00000006314) #29	HTR4 (ENSMLUG00000003382) #30	FBXO38 (ENSMLUG00000013064) #31	ENSMLUG00000029877 #34	ENSMLUG00000022200 #34	SPINK13 (ENSMLUG00000027219) #35	ENSMLUG00000025288	SPINK6 (ENSMLUG00000016837)	ENSMLUG00000027330
Microbat	MODERN SPECIES	957	ENSMLUG00000026058	ENSMLUG00000011420	TAB3 (ENSMLUG00000000437)	ENSMLUG00000001046	TASL (ENSMLUG00000003780)	ENSMLUG00000024600	ENSMLUG00000013249	ENSMLUG00000013243	ENSMLUG00000027796	NR0B1 (ENSMLUG00000003238)	MAGEB3 (ENSMLUG00000013246)	ENSMLUG00000001007	IL1RAPL1 (ENSMLUG00000011609)	ENSMLUG00000011637	ENSMLUG00000010720	ENSMLUG00000016106 #22	ENSMLUG00000022187	ENSMLUG00000029898	ENSMLUG00000027726	ENSMLUG00000030314	ENSMLUG00000008009	ENSMLUG00000024423	MAGEB18 (ENSMLUG00000005309)	ENSMLUG00000022745	POLA1 (ENSMLUG00000004537)	PCYT1B (ENSMLUG00000004532)	ENSMLUG00000004525	ENSMLUG00000029461	ENSMLUG00000028600	ENSMLUG00000024661	ENSMLUG00000003962
Atlantogenata	ANCESTRAL SPECIES		ENSGT00390000000703 #8	ENSGT00390000008961 #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT01080000259604	ENSGT00940000161876 #34	ENSGT00740000116871	ENSGT00530000064225	ENSGT00940000162856	ENSGT00520000060726.a
Xenarthra	ANCESTRAL SPECIES	748															ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27
Sloth	DUPLICATION
Sloth	MODERN SPECIES	1317																ENSCHOG00000009766 #22
Sloth	MODERN SPECIES	11526																ENSCHOG00000007648 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	805															ARHGEF37 (ENSDNOG00000047746) #21	CSNK1A1 (ENSDNOG00000042645) #22	IL17B (ENSDNOG00000002613) #23	PCYOX1L (ENSDNOG00000017886) #24	GRPEL2 (ENSDNOG00000048596) #25	AFAP1L1 (ENSDNOG00000018762) #26	ABLIM3 (ENSDNOG00000002530) #27
Armadillo	MODERN SPECIES	811													ENSDNOG00000031013	KCNK1 (ENSDNOG00000010152)	MAP3K21 (ENSDNOG00000040670)	ENSDNOG00000036436 #22	PCNX2 (ENSDNOG00000001976)	ENSDNOG00000036130	ENSDNOG00000044600	ENSDNOG00000039118	MYO9A (ENSDNOG00000004799)	NR2E3 (ENSDNOG00000045485)	THSD4 (ENSDNOG00000002153)	ENSDNOG00000011894	ENSDNOG00000031020	LRRC49 (ENSDNOG00000010610)	LARP6 (ENSDNOG00000042993)	UACA (ENSDNOG00000017227)	TLE3 (ENSDNOG00000019320)	ENSDNOG00000030825	KIF23 (ENSDNOG00000014185)
Afrotheria	ANCESTRAL SPECIES	7	ENSGT00390000008961.e #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000159769.a.b	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT01080000259604	ENSGT00940000161876 #34	ENSGT00510000048608	ENSGT00390000011484	ENSGT00420000029848.B	ENSGT00940000153713.B.d
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	1525																ENSETEG00000003037 #22
Tenrec	MODERN SPECIES	10341																ENSETEG00000002313 #22
Tenrec	MODERN SPECIES	9728																ENSETEG00000010436 #22
Afrotheria_a	ANCESTRAL SPECIES	7	ENSGT00390000008961.e #9	ENSGT00730000111382 #10	ENSGT00940000157656.a #11	ENSGT00940000159769.a.b	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000155983.a.a #30	ENSGT00390000013163 #31	ENSGT01080000259604	ENSGT00940000161876 #34	ENSGT00510000048608	ENSGT00390000011484	ENSGT00420000029848.B	ENSGT00940000153713.B.d
Elephant	MODERN SPECIES	2	NDST1 (ENSLAFG00000000568) #7	ENSLAFG00000031195 #8	CD74 (ENSLAFG00000017699) #9	TCOF1 (ENSLAFG00000021485) #10	ARSI (ENSLAFG00000014293) #11	ENSLAFG00000023243	SLC6A7 (ENSLAFG00000011811) #13	CDX1 (ENSLAFG00000025906) #14	PDGFRB (ENSLAFG00000016816) #15	CSF1R (ENSLAFG00000016799) #16	HMGXB3 (ENSLAFG00000016790) #17	SLC26A2 (ENSLAFG00000029084) #18	PDE6A (ENSLAFG00000022256) #19	PPARGC1B (ENSLAFG00000012339) #20	ARHGEF37 (ENSLAFG00000013074) #21	CSNK1A1 (ENSLAFG00000002394) #22	IL17B (ENSLAFG00000021716) #23	PCYOX1L (ENSLAFG00000006493) #24	GRPEL2 (ENSLAFG00000006489) #25	AFAP1L1 (ENSLAFG00000006486) #26	ABLIM3 (ENSLAFG00000006481) #27	SH3TC2 (ENSLAFG00000006471) #28	ADRB2 (ENSLAFG00000032235) #29	HTR4 (ENSLAFG00000013339) #30	FBXO38 (ENSLAFG00000014405) #31	ENSLAFG00000016388	SPINK7 (ENSLAFG00000022995) #34	SPINK5 (ENSLAFG00000002815)	C5orf46 (ENSLAFG00000031450)	SCGB3A2 (ENSLAFG00000011483)	JAKMIP2 (ENSLAFG00000014366)
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	1195																ENSPCAG00000015341 #22
Hyrax	MODERN SPECIES	10227																ENSPCAG00000012021 #22
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	39																ENSGT00940000153700.jc.a.a.a.a #22	ENSGT00940000162502	ENSGT00530000063582.a	ENSGT00950000183055.a.b	ENSGT00510000047733	ENSGT00390000017860.a.a	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904	ENSGT00950000183068.a.a	ENSGT00390000000360	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294
Marsupialia_b	ANCESTRAL SPECIES	35																ENSGT00940000153700.jc.a.a.a.a #22	ENSGT00940000162502	ENSGT00530000063582.a	ENSGT00950000183055.a.b	ENSGT00510000047733	ENSGT00390000017860.a.a	ENSGT00390000016992	ENSGT00940000161397	ENSGT00940000158132	ENSGT00390000018904.xb	ENSGT00950000183068.a.a	ENSGT00390000000360	ENSGT00390000006885.a	ENSGT00390000012647	ENSGT00940000154783	ENSGT00940000160294
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000003600	ENSSHAG00000001119	ENSSHAG00000022773	ENSSHAG00000002647	ENSSHAG00000023331	ENSSHAG00000022828	ENSSHAG00000028949	ENSSHAG00000006530	ENSSHAG00000003260	ENSSHAG00000005152	ENSSHAG00000000642	ENSSHAG00000006338	ENSSHAG00000023175	ENSSHAG00000021768	ENSSHAG00000028800	ENSSHAG00000023544 #22	ENSSHAG00000028680	ENSSHAG00000005076	ENSSHAG00000027931	ENSSHAG00000005274	ENSSHAG00000027010	ENSSHAG00000003431	ENSSHAG00000002237	ENSSHAG00000030857	RAB39B (ENSSHAG00000023435)	ENSSHAG00000002823	ENSSHAG00000000499	ENSSHAG00000005392	ENSSHAG00000031991	FUNDC2 (ENSSHAG00000004767)	ENSSHAG00000000596
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.a.a.a #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.a.a.a #22
koala	MODERN SPECIES	275															ENSPCIG00000032358	ENSPCIG00000029323 #22	TMLHE (ENSPCIG00000029328)	SPRY3 (ENSPCIG00000029329)	VAMP7 (ENSPCIG00000021213)	ENSPCIG00000021211	ENSPCIG00000029331	ENSPCIG00000029332	RAB39B (ENSPCIG00000029333)	ENSPCIG00000029334	ENSPCIG00000029335	ENSPCIG00000029336	MTCP1 (ENSPCIG00000029337)	CMC4 (ENSPCIG00000012830)	FUNDC2 (ENSPCIG00000029338)	F8 (ENSPCIG00000029339)	MPP1 (ENSPCIG00000016705)
Opossum	MODERN SPECIES	627	SLC10A3 (ENSMODG00000009006)	FAM3A (ENSMODG00000009016)	ENSMODG00000009130	G6PD (ENSMODG00000009154)	IKBKG (ENSMODG00000009175)	ENSMODG00000039236	ENSMODG00000009196	ENSMODG00000009214	ENSMODG00000009225	GAB3 (ENSMODG00000009236)	ENSMODG00000048987	DKC1 (ENSMODG00000009243)	MPP1 (ENSMODG00000009267)	ENSMODG00000050119	ENSMODG00000009313	ENSMODG00000048424 #22	FAAH2 (ENSMODG00000006103)	ENSMODG00000006108	TMLHE (ENSMODG00000006132)	ENSMODG00000025401	VAMP7 (ENSMODG00000006160)	ENSMODG00000028790	ENSMODG00000006206	CLIC2 (ENSMODG00000047773)	ENSMODG00000040079	ENSMODG00000004295	ENSMODG00000011427	ENSMODG00000027717	ACSL4 (ENSMODG00000011470)	ENSMODG00000037806	TMEM164 (ENSMODG00000025395)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.a.a.b #22
Marsupialia_b	ANCESTRAL SPECIES	63															ENSGT00940000155210.b	ENSGT00940000153700.jc.a.a.a.b #22	ENSGT00950000183213.a.a.a.l	ENSGT00940000157805.r
Diprotodontia	ANCESTRAL SPECIES	122															ENSGT00940000155210.b	ENSGT00940000153700.jc.a.a.a.b #22	ENSGT00950000183213.a.a.a.l	ENSGT00940000157805.r
Diprotodontia_a	ANCESTRAL SPECIES	117															ENSGT00940000155210.b	ENSGT00940000153700.jc.a.a.a.b #22	ENSGT00950000183213.a.a.a.l	ENSGT00940000157805.r
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	191												ENSVURG00010019194	ENSVURG00010019167	ENSVURG00010019161	ENSVURG00010019157	ENSVURG00010019154 #22
Common wonbat	MODERN SPECIES	206														ENSVURG00010021065	ENSVURG00010021068	ENSVURG00010021072 #22	ENSVURG00010021076	FAAH2 (ENSVURG00010021078)	TMLHE (ENSVURG00010021084)	SPRY3 (ENSVURG00010021087)	ENSVURG00010021091	ENSVURG00010021094	ENSVURG00010021099	CLIC2 (ENSVURG00010021105)	ENSVURG00010021106
koala	MODERN SPECIES	335														ENSPCIG00000010134	ENSPCIG00000005393	ENSPCIG00000009307 #22	ENSPCIG00000024696	ENSPCIG00000001930	ENSPCIG00000012418	ENSPCIG00000009978	ENSPCIG00000014150
Tasmanian devil	MODERN SPECIES	21															ENSSHAG00000031747	ENSSHAG00000001072 #22	ENSSHAG00000023723	ENSSHAG00000001630	ENSSHAG00000030968	ENSSHAG00000001491	ENSSHAG00000000292	ENSSHAG00000000566	ENSSHAG00000027267	ENSSHAG00000030188	ENSSHAG00000027722	ENSSHAG00000029117	ENSSHAG00000003075	ENSSHAG00000002186	ENSSHAG00000027640	ENSSHAG00000002700	ENSSHAG00000029755
Opossum	MODERN SPECIES	627	LRCH2 (ENSMODG00000005026)	PLS3 (ENSMODG00000004940)	AGTR2 (ENSMODG00000004897)	ENSMODG00000042869	ENSMODG00000004365	ENSMODG00000040103	ENSMODG00000009077 #22	ENSMODG00000009064	ENSMODG00000036377	PCDH19 (ENSMODG00000009008)	TNMD (ENSMODG00000008987)	ENSMODG00000017489	ENSMODG00000045389	ENSMODG00000017486	ENSMODG00000025187	ENSMODG00000049110 #22	ENSMODG00000017482	ENSMODG00000017480	ENSMODG00000025190	ENSMODG00000017473	ENSMODG00000044797	ENSMODG00000029644	ENSMODG00000017465	ENSMODG00000025192	ENSMODG00000017423	ENSMODG00000027595	ENSMODG00000022861	SH3BGRL (ENSMODG00000004322)	BRWD3 (ENSMODG00000004308)	ENSMODG00000014584	ENSMODG00000004273
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.a.b #22
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000156711	ENSGT00390000015293	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.a	ENSGT00940000160425	ENSGT00940000155079.b	ENSGT00940000156743	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000157843	ENSGT00900000143582	ENSGT00940000156894	ENSGT00940000153700.jc.a.a.b #22	ENSGT00940000155454	ENSGT00940000155219	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT00390000013956	ENSGT00990000203769	ENSGT00940000164962.a	ENSGT00940000156877	ENSGT00950000183174.B.b	ENSGT00390000011709	ENSGT00390000006601	ENSGT00940000158106	ENSGT00940000153313.B	ENSGT01070000253816.a.a.b
Diprotodontia	ANCESTRAL SPECIES	116											ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000157843	ENSGT00940000156894	ENSGT00940000153700.jc.a.a.b #22
Wallaby	MODERN SPECIES	14368																ENSMEUG00000011836 #22
Diprotodontia_a	ANCESTRAL SPECIES	108									ENSGT00940000156743	ENSGT01030000234641.b.a.b.a.a.l	ENSGT00940000155487	ENSGT00940000181563	ENSGT00940000157767	ENSGT00940000157843	ENSGT00940000156894	ENSGT00940000153700.jc.a.a.b #22
Common wonbat	MODERN SPECIES	1170									PCDH20 (ENSVURG00010014226)	ENSVURG00010014222	TDRD3 (ENSVURG00010014176)	ENSVURG00010014157	ENSVURG00010014148	ENSVURG00010013294	PCDH17 (ENSVURG00010013234)	ENSVURG00010013223 #22	ENSVURG00010013219
koala	MODERN SPECIES	201															PCDH17 (ENSPCIG00000034370)	ENSPCIG00000016991 #22	ENSPCIG00000030961	ENSPCIG00000030841	ENSPCIG00000015035
Tasmanian devil	MODERN SPECIES	2	KLHL1 (ENSSHAG00000009888)	ENSSHAG00000007080	PCDH9 (ENSSHAG00000010087)	ENSSHAG00000024025	PCDH20 (ENSSHAG00000003246)	ENSSHAG00000026280	ENSSHAG00000021559	TDRD3 (ENSSHAG00000011994)	ENSSHAG00000029149	DIAPH3 (ENSSHAG00000014221)	ENSSHAG00000020824	ENSSHAG00000015066	ENSSHAG00000029234	PCDH17 (ENSSHAG00000030397)	ENSSHAG00000031334	ENSSHAG00000011884 #22	ENSSHAG00000030587	OLFM4 (ENSSHAG00000017198)	PCDH8 (ENSSHAG00000024494)	ENSSHAG00000021232	ENSSHAG00000027194	ENSSHAG00000017887	WBP4 (ENSSHAG00000018027)	ENSSHAG00000023806	MTRF1 (ENSSHAG00000018109)	NAA16 (ENSSHAG00000018196)	RGCC (ENSSHAG00000029520)	VWA8 (ENSSHAG00000027337)	ENSSHAG00000022714	DGKH (ENSSHAG00000001014)	AKAP11 (ENSSHAG00000022883)
Opossum	MODERN SPECIES	6	ENSMODG00000024965	ENSMODG00000038503	ENSMODG00000029077	ENSMODG00000043469	ENSMODG00000006268	ENSMODG00000029389	PCDH20 (ENSMODG00000006279)	ENSMODG00000024918	ENSMODG00000006329	DIAPH3 (ENSMODG00000006363)	ENSMODG00000047947	HDAC8 (ENSMODG00000024915)	PCDH17 (ENSMODG00000006409)	ENSMODG00000006412	ENSMODG00000044149	ENSMODG00000048827 #22	ENSMODG00000028702	ENSMODG00000044832	ENSMODG00000046257	ENSMODG00000024964	ENSMODG00000014727	OLFM4 (ENSMODG00000047878)	PCDH8 (ENSMODG00000014739)	CNMD (ENSMODG00000014743)	SUGT1 (ENSMODG00000014748)	ELF1 (ENSMODG00000014756)	WBP4 (ENSMODG00000014761)	ENSMODG00000045233	ENSMODG00000050131	MTRF1 (ENSMODG00000014772)	NAA16 (ENSMODG00000014799)
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	32	ENSGT00940000160861.b	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00390000003231.a	ENSGT00940000161632	ENSGT00940000158987	ENSGT00940000153304.A	ENSGT00940000159060	ENSGT00940000159149	ENSGT00940000159092	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00390000002869.lb	ENSGT00940000155484.d	ENSGT00940000153700.jc.a.b.a #22
Marsupialia_b	ANCESTRAL SPECIES	30	ENSGT00940000160861.b	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00390000003231.a	ENSGT00940000161632	ENSGT00940000158987	ENSGT00940000153304.A	ENSGT00940000159060	ENSGT00940000159149	ENSGT00940000159092	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00390000002869.lb	ENSGT00940000155484.d	ENSGT00940000153700.jc.a.b.a #22	ENSGT00940000156683.g.a	ENSGT00940000159725.m.a	ENSGT00940000164266	ENSGT00940000157822	ENSGT00940000154686.u.b
Diprotodontia	ANCESTRAL SPECIES	76	ENSGT00940000160861.b	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00390000003231.a	ENSGT00940000161632	ENSGT00940000158987	ENSGT00940000153304.A	ENSGT00940000159060	ENSGT00940000159149	ENSGT00940000159092	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00390000002869.lb	ENSGT00940000155484.d	ENSGT00940000153700.jc.a.b.a #22	ENSGT00940000157822	ENSGT00940000154686.u.b
Diprotodontia_a	ANCESTRAL SPECIES	76	ENSGT00940000160861.b	ENSGT00940000153467.a.b	ENSGT00390000013235	ENSGT00940000154325.a	ENSGT00390000003231.a	ENSGT00940000161632	ENSGT00940000158987	ENSGT00940000153304.A	ENSGT00940000159060	ENSGT00940000159149	ENSGT00940000159092	ENSGT00480000042679.a	ENSGT00940000159162	ENSGT00390000002869.lb	ENSGT00940000155484.d	ENSGT00940000153700.jc.a.b.a #22	ENSGT00940000157822	ENSGT00940000154686.u.b
koala	MODERN SPECIES	145	ENSPCIG00000020174	DRP2 (ENSPCIG00000020173)	CENPI (ENSPCIG00000020170)	XKRX (ENSPCIG00000020166)	TMEM35A (ENSPCIG00000020167)	NOX1 (ENSPCIG00000003058)	CSTF2 (ENSPCIG00000002989)	TRMT12 (ENSPCIG00000002967)	SYTL4 (ENSPCIG00000002945)	SRPX2 (ENSPCIG00000002875)	TSPAN6 (ENSPCIG00000003889)	TNMD (ENSPCIG00000002852)	PCDH19 (ENSPCIG00000002819)	ENSPCIG00000002813	ENSPCIG00000025420	ENSPCIG00000036828 #22	ENSPCIG00000005618	ENSPCIG00000012015	DIAPH2 (ENSPCIG00000012008)	ENSPCIG00000012004	ENSPCIG00000005416
Common wonbat	MODERN SPECIES	244						CSTF2 (ENSVURG00010003885)	TRMT12 (ENSVURG00010003898)	SYTL4 (ENSVURG00010003912)	SRPX2 (ENSVURG00010003946)	ENSVURG00010003959	TSPAN6 (ENSVURG00010003966)	TNMD (ENSVURG00010003980)	PCDH19 (ENSVURG00010004006)	ENSVURG00010004019	ENSVURG00010004035	ENSVURG00010004052 #22	ENSVURG00010004089	DIAPH2 (ENSVURG00010004110)	ENSVURG00010004133
Wallaby	MODERN SPECIES	11970																ENSMEUG00000009228 #22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000013690	ENSSHAG00000013748	DRP2 (ENSSHAG00000013909)	ENSSHAG00000014223	TMEM35A (ENSSHAG00000014436)	XKRX (ENSSHAG00000028522)	CSTF2 (ENSSHAG00000003681)	ENSSHAG00000003345	SYTL4 (ENSSHAG00000000418)	SRPX2 (ENSSHAG00000002715)	TSPAN6 (ENSSHAG00000022159)	ENSSHAG00000002597	ENSSHAG00000026076	ENSSHAG00000027826	ENSSHAG00000011039	ENSSHAG00000029880 #22	ENSSHAG00000006441	ENSSHAG00000009958	ENSSHAG00000011182 #22	ENSSHAG00000020887	ENSSHAG00000006765	ENSSHAG00000001443	ENSSHAG00000024769	ENSSHAG00000021905	ENSSHAG00000030292	ENSSHAG00000024191	ENSSHAG00000027152	ENSSHAG00000015276	ENSSHAG00000024178	ENSSHAG00000021578	ENSSHAG00000021389
Opossum	MODERN SPECIES	627	ENSMODG00000029644	ENSMODG00000044797	ENSMODG00000017473	ENSMODG00000025190	ENSMODG00000017480	ENSMODG00000017482	ENSMODG00000049110 #22	ENSMODG00000025187	ENSMODG00000017486	ENSMODG00000045389	ENSMODG00000017489	TNMD (ENSMODG00000008987)	PCDH19 (ENSMODG00000009008)	ENSMODG00000036377	ENSMODG00000009064	ENSMODG00000009077 #22	ENSMODG00000040103	ENSMODG00000004365	ENSMODG00000042869	AGTR2 (ENSMODG00000004897)	PLS3 (ENSMODG00000004940)	LRCH2 (ENSMODG00000005026)	ENSMODG00000005037	HTR2C (ENSMODG00000005042)	ENSMODG00000005047	ENSMODG00000025173	AMOT (ENSMODG00000005098)	LHFPL1 (ENSMODG00000005109)	ENSMODG00000005054	ENSMODG00000005159	ENSMODG00000005175
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.b.b #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.b.b #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.a.b.b #22
Wallaby	MODERN SPECIES	11730																ENSMEUG00000010334 #22
Tasmanian devil	MODERN SPECIES	21	ENSSHAG00000014223	TMEM35A (ENSSHAG00000014436)	XKRX (ENSSHAG00000028522)	CSTF2 (ENSSHAG00000003681)	ENSSHAG00000003345	SYTL4 (ENSSHAG00000000418)	SRPX2 (ENSSHAG00000002715)	TSPAN6 (ENSSHAG00000022159)	ENSSHAG00000002597	ENSSHAG00000026076	ENSSHAG00000027826	ENSSHAG00000011039	ENSSHAG00000029880 #22	ENSSHAG00000006441	ENSSHAG00000009958	ENSSHAG00000011182 #22	ENSSHAG00000020887	ENSSHAG00000006765	ENSSHAG00000001443	ENSSHAG00000024769	ENSSHAG00000021905	ENSSHAG00000030292	ENSSHAG00000024191	ENSSHAG00000027152	ENSSHAG00000015276	ENSSHAG00000024178	ENSSHAG00000021578	ENSSHAG00000021389	ENSSHAG00000001527	ENSSHAG00000028295	ENSSHAG00000005855
Marsupialia	ANCESTRAL SPECIES																	ENSGT00940000153700.jc.b #22
Marsupialia_b	ANCESTRAL SPECIES	22								ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00940000153700.jc.b #22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT01020000234433	ENSGT00940000154194	ENSGT00550000074964.i.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162845	ENSGT00940000164026	ENSGT00940000162708.d.b	ENSGT00940000162708.c	ENSGT00510000048844	ENSGT00530000063169.a	ENSGT00390000011412
Diprotodontia	ANCESTRAL SPECIES	93									ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919.c	ENSGT00950000182815.a.a.a.a.a	ENSGT00940000153700.jc.b #22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT01020000234433	ENSGT00940000154194	ENSGT00550000074964.i.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162845	ENSGT00940000164026
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00940000153745.b	ENSGT00940000160597	ENSGT00940000156721	ENSGT00390000013285.a	ENSGT00390000013285.b	ENSGT00940000156660	ENSGT00940000153169.A.b.b.b.a.a.b	ENSGT00390000001670	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00910000144252	ENSGT00940000160278	ENSGT00940000155292	ENSGT00940000155919.c	ENSGT00950000182815.a.a.a.a.a	ENSGT00940000153700.jc.b #22	ENSGT00390000001063	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT01020000234433	ENSGT00940000154194	ENSGT00550000074964.i.b	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162845	ENSGT00940000164026
koala	MODERN SPECIES	129	ENSPCIG00000006152	BDH2 (ENSPCIG00000002080)	SLC9B2 (ENSPCIG00000002054)	SLC9B1 (ENSPCIG00000034978)	CISD2 (ENSPCIG00000012817)	ENSPCIG00000012819	MANBA (ENSPCIG00000012838)	ENSPCIG00000011654	GRID2 (ENSPCIG00000011388)	SMARCAD1 (ENSPCIG00000008137)	HPGDS (ENSPCIG00000014634)	ENSPCIG00000031426	ENSPCIG00000003127	ENSPCIG00000013959	UNC5C (ENSPCIG00000012678)	ENSPCIG00000020815 #22	RAP1GDS1 (ENSPCIG00000020876)	TSPAN5 (ENSPCIG00000020926)	ENSPCIG00000020927	EIF4E (ENSPCIG00000020928)	ENSPCIG00000020929	METAP1 (ENSPCIG00000020930)	ADH5 (ENSPCIG00000008481)	ENSPCIG00000036569	ENSPCIG00000035356
Common wonbat	MODERN SPECIES	1057	SLC9B1 (ENSVURG00010002942)	ENSVURG00010002925	CISD2 (ENSVURG00010002919)	ENSVURG00010002886	ENSVURG00010002867	MANBA (ENSVURG00010002802)	ENSVURG00010002722	ENSVURG00010002684	GRID2 (ENSVURG00010002557)	SMARCAD1 (ENSVURG00010002424)	HPGDS (ENSVURG00010002397)	PDLIM5 (ENSVURG00010002375)	ENSVURG00010002309	UNC5C (ENSVURG00010002186)	ENSVURG00010002051	ENSVURG00010001990 #22	STPG2 (ENSVURG00010001945)	RAP1GDS1 (ENSVURG00010001891)	TSPAN5 (ENSVURG00010001805)	ENSVURG00010001758	EIF4E (ENSVURG00010001708)	ENSVURG00010001703	METAP1 (ENSVURG00010001691)	ADH5 (ENSVURG00010001613)	ENSVURG00010001475	ENSVURG00010001435	ENSVURG00010001424
Wallaby	MODERN SPECIES	11085																ENSMEUG00000012540 #22
Tasmanian devil	MODERN SPECIES	5	ENSSHAG00000003188	BDH2 (ENSSHAG00000000467)	ENSSHAG00000031711	SLC9B1 (ENSSHAG00000001046)	CISD2 (ENSSHAG00000027029)	ENSSHAG00000032257	ENSSHAG00000022865	ENSSHAG00000028876	ENSSHAG00000023749	ENSSHAG00000009094	SMARCAD1 (ENSSHAG00000001279)	HPGDS (ENSSHAG00000030263)	PDLIM5 (ENSSHAG00000013682)	BMPR1B (ENSSHAG00000010891)	UNC5C (ENSSHAG00000009559)	ENSSHAG00000007288 #22	ENSSHAG00000032013	ENSSHAG00000011672	TSPAN5 (ENSSHAG00000010438)	ENSSHAG00000027419	EIF4E (ENSSHAG00000008442)	METAP1 (ENSSHAG00000007251)	ENSSHAG00000007537	ADH5 (ENSSHAG00000006870)	ENSSHAG00000005258	ENSSHAG00000004291	ENSSHAG00000002493	ENSSHAG00000002148	ENSSHAG00000031530	ENSSHAG00000003098	ENSSHAG00000031751
Opossum	MODERN SPECIES	4	ENSMODG00000025268	ENSMODG00000019293	ENSMODG00000029043	ENSMODG00000045914	ENSMODG00000040643	GRID2 (ENSMODG00000019273)	ATOH1 (ENSMODG00000019270)	SMARCAD1 (ENSMODG00000019268)	HPGDS (ENSMODG00000019265)	PDLIM5 (ENSMODG00000019264)	ENSMODG00000047907	BMPR1B (ENSMODG00000019262)	UNC5C (ENSMODG00000019260)	ENSMODG00000019258	ENSMODG00000044768	ENSMODG00000019254 #22	ENSMODG00000049390	ENSMODG00000047230	ENSMODG00000044944	ENSMODG00000025522	PPM1K (ENSMODG00000019241)	HERC6 (ENSMODG00000019236)	ENSMODG00000047305	ENSMODG00000019234	HERC3 (ENSMODG00000019229)	ENSMODG00000019226	ENSMODG00000025301	ENSMODG00000037266	SDAD1 (ENSMODG00000019219)	ENSMODG00000019214	ENSMODG00000025521
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00390000002792.o	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kc #22	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000158185	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000157770	ENSGT00940000160880	ENSGT00510000046929.b	ENSGT00390000012163	ENSGT00940000160864	ENSGT00940000160067	ENSGT00940000158849	ENSGT00950000182810.A.b	ENSGT00940000156071	ENSGT00940000153168.C.a.a	ENSGT01070000253822.E
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00390000002792.o	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kc #22	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000158185	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000157770	ENSGT00940000160880	ENSGT00510000046929.b	ENSGT00390000012163	ENSGT00940000160864	ENSGT00940000160067	ENSGT00940000158849	ENSGT00950000182810.A.b	ENSGT00940000156071	ENSGT00940000153168.C.a.a	ENSGT01070000253822.E
Diprotodontia	ANCESTRAL SPECIES	6	ENSGT00390000002792.o	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kc #22	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000158185	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000157770	ENSGT00940000160880	ENSGT00510000046929.b	ENSGT00390000012163	ENSGT00940000160864	ENSGT00940000160067	ENSGT00940000158849	ENSGT00950000182810.A.b	ENSGT00940000156071	ENSGT00940000153168.C.a.a	ENSGT01070000253822.E
Diprotodontia_a	ANCESTRAL SPECIES	7	ENSGT00390000002792.o	ENSGT00390000006954	ENSGT00390000009443	ENSGT00940000157656.a #11	ENSGT00940000155150.b.b #12	ENSGT00940000160823 #13	ENSGT00940000162069 #14	ENSGT00940000157138 #15	ENSGT00940000155506 #16	ENSGT00390000006983 #17	ENSGT00940000163700	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700.kc #22	ENSGT01030000234527.A.a.b.b.a	ENSGT00940000158185	ENSGT00950000182864.a.b.b.a.b.a.b	ENSGT01030000234518.A.a.b	ENSGT00940000157770	ENSGT00940000160880	ENSGT00510000046929.b	ENSGT00390000012163	ENSGT00940000160864	ENSGT00940000160067	ENSGT00940000158849	ENSGT00950000182810.A.b	ENSGT00940000156071	ENSGT00940000153168.C.a.a	ENSGT01070000253822.E.l.a
Common wonbat	MODERN SPECIES	1087	DCTN4 (ENSVURG00010008039)	SMIM3 (ENSVURG00010008052)	ENSVURG00010008054 #11	ENSVURG00010008058 #11	CAMK2A (ENSVURG00010008075) #12	SLC6A7 (ENSVURG00010008134) #13	CDX1 (ENSVURG00010008143) #14	PDGFRB (ENSVURG00010008163) #15	CSF1R (ENSVURG00010008187) #16	HMGXB3 (ENSVURG00010008212) #17	TIGD6 (ENSVURG00010008246)	SLC26A2 (ENSVURG00010008248) #18	PPARGC1B (ENSVURG00010008276) #20	ARHGEF37 (ENSVURG00010008297) #21	ENSVURG00010008310	ENSVURG00010008320 #22	DPYSL3 (ENSVURG00010008394)	STK32A (ENSVURG00010008433)	PPP2R2B (ENSVURG00010008487)	TCERG1 (ENSVURG00010008636)	GPR151 (ENSVURG00010008710)	POU4F3 (ENSVURG00010008715)	RBM27 (ENSVURG00010008743)	LARS1 (ENSVURG00010008801)	SH3RF2 (ENSVURG00010008874)	GRXCR2 (ENSVURG00010008892)	PRELID2 (ENSVURG00010008901)	KCTD16 (ENSVURG00010008934)	YIPF5 (ENSVURG00010008949)	ENSVURG00010008958	NR3C1 (ENSVURG00010009008)
koala	MODERN SPECIES	151	SMIM3 (ENSPCIG00000015082)	ARSI (ENSPCIG00000015081) #11	CAMK2A (ENSPCIG00000028012) #12	SLC6A7 (ENSPCIG00000028016) #13	CDX1 (ENSPCIG00000028021) #14	PDGFRB (ENSPCIG00000019781) #15	CSF1R (ENSPCIG00000019799) #16	ENSPCIG00000031345	HMGXB3 (ENSPCIG00000013139) #17	TIGD6 (ENSPCIG00000016474)	SLC26A2 (ENSPCIG00000016473) #18	PDE6A (ENSPCIG00000019146) #19	PPARGC1B (ENSPCIG00000020102) #20	ARHGEF37 (ENSPCIG00000020104) #21	ENSPCIG00000020106	ENSPCIG00000020109 #22	ENSPCIG00000020113	ENSPCIG00000020120	STK32A (ENSPCIG00000020118)	PPP2R2B (ENSPCIG00000010698)	GPR151 (ENSPCIG00000010706)	TCERG1 (ENSPCIG00000010713)	POU4F3 (ENSPCIG00000025792)	RBM27 (ENSPCIG00000025797)	LARS1 (ENSPCIG00000030572)	PLAC8L1 (ENSPCIG00000030573)	SH3RF2 (ENSPCIG00000030574)	GRXCR2 (ENSPCIG00000005928)	ENSPCIG00000005934	PRELID2 (ENSPCIG00000032968)	ENSPCIG00000005938
Wallaby	MODERN SPECIES	2265																ENSMEUG00000011425 #22
Tasmanian devil	MODERN SPECIES	1	DCTN4 (ENSSHAG00000017664)	ENSSHAG00000022372	ENSSHAG00000023178	ENSSHAG00000017512 #11	CAMK2A (ENSSHAG00000017375) #12	SLC6A7 (ENSSHAG00000017303) #13	CDX1 (ENSSHAG00000022841) #14	PDGFRB (ENSSHAG00000017061) #15	CSF1R (ENSSHAG00000016935) #16	HMGXB3 (ENSSHAG00000016817) #17	TIGD6 (ENSSHAG00000026142)	SLC26A2 (ENSSHAG00000016766) #18	PDE6A (ENSSHAG00000016532) #19	ENSSHAG00000016400 #20	ENSSHAG00000015563 #21	ENSSHAG00000020812 #22	ENSSHAG00000014038	ENSSHAG00000024017	STK32A (ENSSHAG00000013781)	GPR151 (ENSSHAG00000026077)	TCERG1 (ENSSHAG00000009179)	POU4F3 (ENSSHAG00000008089)	RBM27 (ENSSHAG00000006988)	LARS1 (ENSSHAG00000006084)	SH3RF2 (ENSSHAG00000002066)	GRXCR2 (ENSSHAG00000008086)	PRELID2 (ENSSHAG00000024365)	KCTD16 (ENSSHAG00000005464)	YIPF5 (ENSSHAG00000004034)	NR3C1 (ENSSHAG00000001727)	ARHGAP26 (ENSSHAG00000011097)
Opossum	MODERN SPECIES		ENSMODG00000009545	MYOZ3 (ENSMODG00000009554)	ENSMODG00000009574	DCTN4 (ENSMODG00000038898)	SMIM3 (ENSMODG00000023732)	ENSMODG00000009615 #11	SLC6A7 (ENSMODG00000009703) #13	CDX1 (ENSMODG00000009708) #14	PDGFRB (ENSMODG00000009737) #15	CSF1R (ENSMODG00000009759) #16	HMGXB3 (ENSMODG00000009798) #17	SLC26A2 (ENSMODG00000045345) #18	PDE6A (ENSMODG00000009879) #19	PPARGC1B (ENSMODG00000009891) #20	ARHGEF37 (ENSMODG00000009895) #21	ENSMODG00000009937 #22	ENSMODG00000009999	ENSMODG00000010051	STK32A (ENSMODG00000010041)	PPP2R2B (ENSMODG00000010096)	GPR151 (ENSMODG00000010101)	TCERG1 (ENSMODG00000010124)	POU4F3 (ENSMODG00000010137)	RBM27 (ENSMODG00000010182)	LARS1 (ENSMODG00000010231)	PLAC8L1 (ENSMODG00000010239)	SH3RF2 (ENSMODG00000010250)	GRXCR2 (ENSMODG00000023740)	PRELID2 (ENSMODG00000010256)	KCTD16 (ENSMODG00000023742)	YIPF5 (ENSMODG00000010287)
Platypus	MODERN SPECIES	84	KLF11 (ENSOANG00000007790)	GRHL1 (ENSOANG00000007788)	ENSOANG00000007787	YWHAQ (ENSOANG00000007786)	TCERG1 (ENSOANG00000006849)	GPR151 (ENSOANG00000006850)	PPP2R2B (ENSOANG00000021421)	ENSOANG00000037332	ENSOANG00000021422	FBXO38 (ENSOANG00000009363) #31	HTR4 (ENSOANG00000009365) #30	SLC26A2 (ENSOANG00000037790) #18	PDE6A (ENSOANG00000009367) #19	PPARGC1B (ENSOANG00000009368) #20	ARHGEF37 (ENSOANG00000039639) #21	CSNK1A1 (ENSOANG00000002863) #22	ENSOANG00000013479 #23	PCYOX1L (ENSOANG00000013478) #24	GRPEL2 (ENSOANG00000011040) #25	ENSOANG00000042936	ENSOANG00000003988	TRAM2 (ENSOANG00000020088)	EFHC1 (ENSOANG00000003986)	PAQR8 (ENSOANG00000003985)	ENSOANG00000003133	MCM3 (ENSOANG00000039131)	PKHD1 (ENSOANG00000003131)	TFAP2B (ENSOANG00000003130)	TFAP2D (ENSOANG00000003129)	ENSOANG00000041605	ENSOANG00000037001
Sauria	ANCESTRAL SPECIES	17	ENSGT00940000159591	ENSGT00940000179707	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Archelosauria	ANCESTRAL SPECIES	15	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Cryptodira	ANCESTRAL SPECIES	15	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Testudinoidea	ANCESTRAL SPECIES	5	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00940000165772.b	ENSGT01000000218554	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Testudinidae	ANCESTRAL SPECIES	16	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00940000165772.b	ENSGT01000000218554	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Abingdon island giant tortoise	MODERN SPECIES	1807	CCNJL (ENSCABG00000012259)	FABP6 (ENSCABG00000012261)	PWWP2A (ENSCABG00000012265)	TTC1 (ENSCABG00000012268)	ADRA1B (ENSCABG00000012272)	IL12B (ENSCABG00000012277)	ENSCABG00000012280	ENSCABG00000012282	FBXO38 (ENSCABG00000012286) #31	HTR4 (ENSCABG00000012290) #30	SLC26A2 (ENSCABG00000012294) #18	ENSCABG00000012295	PPARGC1B (ENSCABG00000012296) #20	ENSCABG00000012299	ENSCABG00000012300	CSNK1A1 (ENSCABG00000012302) #22	IL17B (ENSCABG00000012306) #23	PCYOX1L (ENSCABG00000012307) #24	GRPEL2 (ENSCABG00000012309) #25	AFAP1L1 (ENSCABG00000012310) #26	ABLIM3 (ENSCABG00000012519) #27	SH3TC2 (ENSCABG00000012525) #28
Goode s thornscrub tortoise	MODERN SPECIES	22	PWWP2A (ENSGEVG00005011464)	TTC1 (ENSGEVG00005011434)	ADRA1B (ENSGEVG00005011409)	IL12B (ENSGEVG00005011293)	ENSGEVG00005011251	ENSGEVG00005011208	ENSGEVG00005011162	ENSGEVG00005011127	FBXO38 (ENSGEVG00005011028) #31	HTR4 (ENSGEVG00005010911) #30	SLC26A2 (ENSGEVG00005010871) #18	ENSGEVG00005010816	PPARGC1B (ENSGEVG00005010716) #20	ARHGEF37 (ENSGEVG00005010677) #21	ENSGEVG00005010620	CSNK1A1 (ENSGEVG00005010496) #22	IL17B (ENSGEVG00005010426) #23	PCYOX1L (ENSGEVG00005010405) #24	GRPEL2 (ENSGEVG00005010390) #25	AFAP1L1 (ENSGEVG00005010272) #26	ENSGEVG00005010177 #27	ENSGEVG00005009824 #27	SH3TC2 (ENSGEVG00005009752) #28	ADRB2 (ENSGEVG00005009673) #29	UBTD2 (ENSGEVG00005009650)	EFCAB9 (ENSGEVG00005009608)	STK10 (ENSGEVG00005009569)	ENSGEVG00005009428	ENSGEVG00005009402	NEURL1B (ENSGEVG00005009384)	DUSP1 (ENSGEVG00005009360)
Emydidae	ANCESTRAL SPECIES	11	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00940000165772.b	ENSGT01000000218554	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
painted turtle	MODERN SPECIES	2385	PWWP2A (ENSCPBG00000008022)	TTC1 (ENSCPBG00000008013)	ADRA1B (ENSCPBG00000008010)	IL12B (ENSCPBG00000007991)	ENSCPBG00000007984	ENSCPBG00000007976	ENSCPBG00000007970	FBXO38 (ENSCPBG00000007955) #31	HTR4 (ENSCPBG00000007919) #30	ENSCPBG00000007906	SLC26A2 (ENSCPBG00000007902) #18	ENSCPBG00000007898	PPARGC1B (ENSCPBG00000007891) #20	ARHGEF37 (ENSCPBG00000007872) #21	ENSCPBG00000007862	CSNK1A1 (ENSCPBG00000007854) #22	IL17B (ENSCPBG00000007844) #23	PCYOX1L (ENSCPBG00000007839) #24	GRPEL2 (ENSCPBG00000007831) #25	AFAP1L1 (ENSCPBG00000007799) #26	ABLIM3 (ENSCPBG00000007739) #27	SH3TC2 (ENSCPBG00000007700) #28	ADRB2 (ENSCPBG00000007688) #29	UBTD2 (ENSCPBG00000007679)	EFCAB9 (ENSCPBG00000007673)	STK10 (ENSCPBG00000007660)	SH3PXD2B (ENSCPBG00000007639)	NEURL1B (ENSCPBG00000007630)	DUSP1 (ENSCPBG00000007611)	ENSCPBG00000007606	ERGIC1 (ENSCPBG00000007601)
Three-toed box turtle	MODERN SPECIES	177		PWWP2A (ENSTMTG00000015264)	TTC1 (ENSTMTG00000015247)	ADRA1B (ENSTMTG00000015241)	IL12B (ENSTMTG00000015219)	ENSTMTG00000015207	ENSTMTG00000015196	ENSTMTG00000015184	FBXO38 (ENSTMTG00000015153) #31	HTR4 (ENSTMTG00000015116) #30	SLC26A2 (ENSTMTG00000015109) #18	ENSTMTG00000015086	PPARGC1B (ENSTMTG00000015044) #20	ARHGEF37 (ENSTMTG00000015020) #21	ENSTMTG00000014993	CSNK1A1 (ENSTMTG00000014973) #22	IL17B (ENSTMTG00000014942) #23	PCYOX1L (ENSTMTG00000014925) #24	GRPEL2 (ENSTMTG00000014920) #25	AFAP1L1 (ENSTMTG00000014767) #26	ABLIM3 (ENSTMTG00000013687) #27	SH3TC2 (ENSTMTG00000013579) #28	ADRB2 (ENSTMTG00000013564) #29	UBTD2 (ENSTMTG00000013558)	STK10 (ENSTMTG00000013536)	SH3PXD2B (ENSTMTG00000013489)	NEURL1B (ENSTMTG00000013469)	DUSP1 (ENSTMTG00000013458)
Chinese turtle	MODERN SPECIES	2220	ENSPSIG00000000217	ENSPSIG00000014520	TASL (ENSPSIG00000000221)	ENSPSIG00000000229	ENSPSIG00000016721	IL1RAPL1 (ENSPSIG00000016810)	ARX (ENSPSIG00000017365)	ADRA1B (ENSPSIG00000017993)	IL12B (ENSPSIG00000018025)	FBXO38 (ENSPSIG00000005569) #31	HTR4 (ENSPSIG00000006016) #30	SLC26A2 (ENSPSIG00000007690) #18	PPARGC1B (ENSPSIG00000008358) #20	ARHGEF37 (ENSPSIG00000011066) #21	ENSPSIG00000000250	CSNK1A1 (ENSPSIG00000012179) #22	IL17B (ENSPSIG00000013786) #23	PCYOX1L (ENSPSIG00000013871) #24	GRPEL2 (ENSPSIG00000015124) #25	AFAP1L1 (ENSPSIG00000015614) #26	ABLIM3 (ENSPSIG00000006198) #27	SH3TC2 (ENSPSIG00000007989) #28	ADRB2 (ENSPSIG00000008710) #29	UBTD2 (ENSPSIG00000009210)	EFCAB9 (ENSPSIG00000009216)	STK10 (ENSPSIG00000009241)	SH3PXD2B (ENSPSIG00000010303)	NEURL1B (ENSPSIG00000010315)	DUSP1 (ENSPSIG00000011093)	ERGIC1 (ENSPSIG00000011786)	RPL26 (ENSPSIG00000013153)
Archosauria	ANCESTRAL SPECIES	17	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Australian saltwater crocodile	MODERN SPECIES	34	FABP6 (ENSCPRG00005007064)	ENSCPRG00005007069	TTC1 (ENSCPRG00005007077)	ADRA1B (ENSCPRG00005007082)	IL12B (ENSCPRG00005007094)	ENSCPRG00005007099	FBXO38 (ENSCPRG00005007108) #31	HTR4 (ENSCPRG00005007148) #30	ENSCPRG00005007158 #18	SLC26A2 (ENSCPRG00005007205) #18	ENSCPRG00005007213	ENSCPRG00005007214	PPARGC1B (ENSCPRG00005007224) #20	ARHGEF37 (ENSCPRG00005007253) #21	ENSCPRG00005007347	CSNK1A1 (ENSCPRG00005007410) #22	IL17B (ENSCPRG00005007697) #23	PCYOX1L (ENSCPRG00005007700) #24	GRPEL2 (ENSCPRG00005007705) #25	AFAP1L1 (ENSCPRG00005007715) #26	ABLIM3 (ENSCPRG00005007745) #27	SH3TC2 (ENSCPRG00005007768) #28	ADRB2 (ENSCPRG00005007778) #29	UBTD2 (ENSCPRG00005007804)	EFCAB9 (ENSCPRG00005007806)	STK10 (ENSCPRG00005007810)	SH3PXD2B (ENSCPRG00005007836)	NEURL1B (ENSCPRG00005007875)	DUSP1 (ENSCPRG00005007884)	ERGIC1 (ENSCPRG00005007890)	RPL26 (ENSCPRG00005007902)
Aves	ANCESTRAL SPECIES	15	ENSGT00940000179707	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Neognathae	ANCESTRAL SPECIES	14	ENSGT00940000159591	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Neognathae_b	ANCESTRAL SPECIES	16	ENSGT00940000159591	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Neognathae_c	ANCESTRAL SPECIES	19	ENSGT00940000159591	ENSGT00940000159349	ENSGT00950000185681	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00390000007125.b
Kakapo	MODERN SPECIES	6	FABP6 (ENSSHBG00005018215)	PWWP2A (ENSSHBG00005018212)	TTC1 (ENSSHBG00005018210)	ADRA1B (ENSSHBG00005018208)	IL12B (ENSSHBG00005018203)	ENSSHBG00005018201	FBXO38 (ENSSHBG00005018193) #31	HTR4 (ENSSHBG00005018183) #30	ENSSHBG00005018064 #18	SLC26A2 (ENSSHBG00005018055) #18	ENSSHBG00005018051	ENSSHBG00005018047	PPARGC1B (ENSSHBG00005018033) #20	ARHGEF37 (ENSSHBG00005018029) #21	ENSSHBG00005018025	CSNK1A1 (ENSSHBG00005018017) #22	IL17B (ENSSHBG00005018010) #23	PCYOX1L (ENSSHBG00005018008) #24	GRPEL2 (ENSSHBG00005018006) #25	AFAP1L1 (ENSSHBG00005018003) #26	ABLIM3 (ENSSHBG00005018000) #27	SH3TC2 (ENSSHBG00005017984) #28	ADRB2 (ENSSHBG00005017975) #29	UBTD2 (ENSSHBG00005017971)	STK10 (ENSSHBG00005016343)	SH3PXD2B (ENSSHBG00005016219)	NEURL1B (ENSSHBG00005016201)	DUSP1 (ENSSHBG00005016192)	ERGIC1 (ENSSHBG00005016189)	RPL26 (ENSSHBG00005016182)	CREBRF (ENSSHBG00005016175)
Golden eagle	MODERN SPECIES	14	CCNJL (ENSACCG00020016616)	FABP6 (ENSACCG00020016625)	PWWP2A (ENSACCG00020016631)	TTC1 (ENSACCG00020016637)	ADRA1B (ENSACCG00020016640)	IL12B (ENSACCG00020016647)	ENSACCG00020016655	FBXO38 (ENSACCG00020016658) #31	HTR4 (ENSACCG00020016661) #30	ENSACCG00020011572 #18	SLC26A2 (ENSACCG00020011604) #18	ENSACCG00020011626	ENSACCG00020011667	PPARGC1B (ENSACCG00020011712) #20	ARHGEF37 (ENSACCG00020011768) #21	CSNK1A1 (ENSACCG00020011837) #22	IL17B (ENSACCG00020011884) #23	PCYOX1L (ENSACCG00020011932) #24	GRPEL2 (ENSACCG00020011972) #25	AFAP1L1 (ENSACCG00020012061) #26	ABLIM3 (ENSACCG00020012238) #27	SH3TC2 (ENSACCG00020012431) #28	ADRB2 (ENSACCG00020012531) #29	UBTD2 (ENSACCG00020012552)	STK10 (ENSACCG00020012579)	SH3PXD2B (ENSACCG00020012626)	NEURL1B (ENSACCG00020012648)	DUSP1 (ENSACCG00020012672)	ENSACCG00020012686	ERGIC1 (ENSACCG00020012710)	RPL26 (ENSACCG00020012774)
Passeriformes	ANCESTRAL SPECIES	14	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000159591	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Great tit	MODERN SPECIES	4	FABP6 (ENSPMJG00000006313)	ENSPMJG00000006314	TTC1 (ENSPMJG00000006315)	ADRA1B (ENSPMJG00000006317)	IL12B (ENSPMJG00000006319)	ENSPMJG00000006326	FBXO38 (ENSPMJG00000006329) #31	HTR4 (ENSPMJG00000006340) #30	ENSPMJG00000006344 #18	SLC26A2 (ENSPMJG00000006346) #18	ENSPMJG00000006348	ENSPMJG00000006353	ENSPMJG00000006357	PPARGC1B (ENSPMJG00000006359) #20	ARHGEF37 (ENSPMJG00000006361) #21	CSNK1A1 (ENSPMJG00000006380) #22	IL17B (ENSPMJG00000006386) #23	PCYOX1L (ENSPMJG00000006393) #24	GRPEL2 (ENSPMJG00000006401) #25	AFAP1L1 (ENSPMJG00000006405) #26	ABLIM3 (ENSPMJG00000006419) #27	SH3TC2 (ENSPMJG00000006424) #28	ADRB2 (ENSPMJG00000006425) #29	UBTD2 (ENSPMJG00000006444)	STK10 (ENSPMJG00000006445)	SH3PXD2B (ENSPMJG00000006447)	NEURL1B (ENSPMJG00000006456)	DUSP1 (ENSPMJG00000006458)	ERGIC1 (ENSPMJG00000006461)	RPL26 (ENSPMJG00000006464)	CREBRF (ENSPMJG00000006480)
Passeriformes_d	ANCESTRAL SPECIES	15	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000159591	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Flycatcher	MODERN SPECIES	4	ENSFALG00000028176	TTC1 (ENSFALG00000008895)	ADRA1B (ENSFALG00000008888)	IL12B (ENSFALG00000008882)	ENSFALG00000027878	ENSFALG00000008879 #31	ENSFALG00000026449 #30	SLC26A2 (ENSFALG00000022993) #18	ENSFALG00000025241	ENSFALG00000028330	ENSFALG00000026287	PPARGC1B (ENSFALG00000008858) #20	ARHGEF37 (ENSFALG00000008850) #21	ENSFALG00000008853	ENSFALG00000025562	CSNK1A1 (ENSFALG00000028539) #22	ENSFALG00000025781	IL17B (ENSFALG00000025253) #23	PCYOX1L (ENSFALG00000008842) #24	GRPEL2 (ENSFALG00000008841) #25	AFAP1L1 (ENSFALG00000008840) #26	ABLIM3 (ENSFALG00000008837) #27	SH3TC2 (ENSFALG00000008835) #28	ADRB2 (ENSFALG00000014433) #29	ENSFALG00000008833	ENSFALG00000008830	SH3PXD2B (ENSFALG00000008827)	ENSFALG00000008824	DUSP1 (ENSFALG00000008823)	ERGIC1 (ENSFALG00000008820)	ENSFALG00000008818
Passeriformes_g	ANCESTRAL SPECIES	15	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000159591	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Medium ground finch	MODERN SPECIES	11	GDF9 (ENSGFOG00000010909)	C1QTNF2 (ENSGFOG00000010908)	FABP6 (ENSGFOG00000010902)	ENSGFOG00000010897	TTC1 (ENSGFOG00000010891)	ADRA1B (ENSGFOG00000010887)	IL12B (ENSGFOG00000010875)	FBXO38 (ENSGFOG00000010861) #31	HTR4 (ENSGFOG00000010835) #30	ENSGFOG00000010669 #18	SLC26A2 (ENSGFOG00000010656) #18	ENSGFOG00000010647	ENSGFOG00000010644	PPARGC1B (ENSGFOG00000010638) #20	ARHGEF37 (ENSGFOG00000010621) #21	CSNK1A1 (ENSGFOG00000010614) #22	ENSGFOG00000010610	IL17B (ENSGFOG00000010605) #23	PCYOX1L (ENSGFOG00000010603) #24	GRPEL2 (ENSGFOG00000010597) #25	AFAP1L1 (ENSGFOG00000010583) #26	ABLIM3 (ENSGFOG00000010564) #27	ENSGFOG00000010556 #28	ADRB2 (ENSGFOG00000010549) #29	UBTD2 (ENSGFOG00000010545)	STK10 (ENSGFOG00000007164)	SH3PXD2B (ENSGFOG00000007045)	NEURL1B (ENSGFOG00000007039)	DUSP1 (ENSGFOG00000007032)	ERGIC1 (ENSGFOG00000007022)	RPL26 (ENSGFOG00000007011)
Passeroidea	ANCESTRAL SPECIES	15	ENSGT00390000004029	ENSGT00940000159784	ENSGT00940000159591	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Zebra finch	MODERN SPECIES	4	GDF9 (ENSTGUG00000000194)	C1QTNF2 (ENSTGUG00000000195)	FABP6 (ENSTGUG00000000197)	PWWP2A (ENSTGUG00000000199)	TTC1 (ENSTGUG00000000200)	ADRA1B (ENSTGUG00000000206)	IL12B (ENSTGUG00000000209)	ENSTGUG00000027639	FBXO38 (ENSTGUG00000000212) #31	HTR4 (ENSTGUG00000000218) #30	ENSTGUG00000000226 #18	SLC26A2 (ENSTGUG00000000228) #18	ENSTGUG00000020371	PPARGC1B (ENSTGUG00000000232) #20	ARHGEF37 (ENSTGUG00000000241) #21	CSNK1A1 (ENSTGUG00000000243) #22	IL17B (ENSTGUG00000000251) #23	PCYOX1L (ENSTGUG00000000252) #24	GRPEL2 (ENSTGUG00000027926) #25	AFAP1L1 (ENSTGUG00000000263) #26	ABLIM3 (ENSTGUG00000000269) #27	SH3TC2 (ENSTGUG00000000277) #28	ADRB2 (ENSTGUG00000000286) #29	UBTD2 (ENSTGUG00000029278)	STK10 (ENSTGUG00000000289)	SH3PXD2B (ENSTGUG00000022640)	NEURL1B (ENSTGUG00000000298)	DUSP1 (ENSTGUG00000000299)	ERGIC1 (ENSTGUG00000000300)	RPL26 (ENSTGUG00000000309)	ENSTGUG00000026118
Common canary	MODERN SPECIES	16	GDF9 (ENSSCAG00000001629)	C1QTNF2 (ENSSCAG00000001626)	FABP6 (ENSSCAG00000001624)	ENSSCAG00000001622	TTC1 (ENSSCAG00000001618)	ADRA1B (ENSSCAG00000001616)	IL12B (ENSSCAG00000001611)	ENSSCAG00000001607	FBXO38 (ENSSCAG00000001522) #31	HTR4 (ENSSCAG00000001475) #30	ENSSCAG00000001469 #18	SLC26A2 (ENSSCAG00000001463) #18	ENSSCAG00000001456	PPARGC1B (ENSSCAG00000001426) #20	ARHGEF37 (ENSSCAG00000001410) #21	CSNK1A1 (ENSSCAG00000001399) #22	IL17B (ENSSCAG00000001387) #23	PCYOX1L (ENSSCAG00000001381) #24	GRPEL2 (ENSSCAG00000001377) #25	AFAP1L1 (ENSSCAG00000001363) #26	ABLIM3 (ENSSCAG00000001170) #27	SH3TC2 (ENSSCAG00000001099) #28	ADRB2 (ENSSCAG00000001083) #29	UBTD2 (ENSSCAG00000001079)	STK10 (ENSSCAG00000000397)	SH3PXD2B (ENSSCAG00000000168)	NEURL1B (ENSSCAG00000000152)	SFXN1 (ENSSCAG00000000132)	KIF20A (ENSSCAG00000000091)	BRD8 (ENSSCAG00000000078)	ENSSCAG00000000068
Galloanserae	ANCESTRAL SPECIES	14	ENSGT00390000002292.b	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Anatidae	ANCESTRAL SPECIES	52	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT01030000237810	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27
Pink-footed goose	MODERN SPECIES	415													ENSABRG00000011319	PPARGC1B (ENSABRG00000011312) #20	ARHGEF37 (ENSABRG00000011303) #21	CSNK1A1 (ENSABRG00000011274) #22	IL17B (ENSABRG00000011243) #23	PCYOX1L (ENSABRG00000011231) #24	GRPEL2 (ENSABRG00000011218) #25	AFAP1L1 (ENSABRG00000011185) #26	ABLIM3 (ENSABRG00000011141) #27
Duck	MODERN SPECIES	5	ENSAPLG00000007970	SLU7 (ENSAPLG00000008133)	C1QTNF2 (ENSAPLG00000008595)	ENSAPLG00000020414	ENSAPLG00000027187	TTC1 (ENSAPLG00000008791)	ADRA1B (ENSAPLG00000009090)	IL12B (ENSAPLG00000009092)	ENSAPLG00000018464	FBXO38 (ENSAPLG00000009306) #31	HTR4 (ENSAPLG00000009505) #30	ENSAPLG00000027437 #18	SLC26A2 (ENSAPLG00000009889) #18	PPARGC1B (ENSAPLG00000009977) #20	ARHGEF37 (ENSAPLG00000010419) #21	CSNK1A1 (ENSAPLG00000010571) #22	IL17B (ENSAPLG00000011795) #23	PCYOX1L (ENSAPLG00000011797) #24	ENSAPLG00000011936	AFAP1L1 (ENSAPLG00000011997) #26	ABLIM3 (ENSAPLG00000012449) #27
Phasianidae	ANCESTRAL SPECIES	14	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692.k	ENSGT00940000157692.l	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b.h #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Japanese quail	MODERN SPECIES	4	C1QTNF2 (ENSCJPG00005008771)	CCNJL (ENSCJPG00005008772)	FABP6 (ENSCJPG00005008773)	PWWP2A (ENSCJPG00005008774)	TTC1 (ENSCJPG00005008775)	IL12B (ENSCJPG00005008776)	ADRA1B (ENSCJPG00005008779)	ENSCJPG00005008780	FBXO38 (ENSCJPG00005008781) #31	HTR4 (ENSCJPG00005008783) #30	ENSCJPG00005008787 #18	SLC26A2 (ENSCJPG00005008790) #18	ENSCJPG00005008791	PPARGC1B (ENSCJPG00005008794) #20	ARHGEF37 (ENSCJPG00005008801) #21	CSNK1A1 (ENSCJPG00005008802) #22	IL17B (ENSCJPG00005008805) #23	PCYOX1L (ENSCJPG00005008806) #24	GRPEL2 (ENSCJPG00005008807) #25	AFAP1L1 (ENSCJPG00005008808) #26	ABLIM3 (ENSCJPG00005008809) #27	SH3TC2 (ENSCJPG00005008812) #28	ADRB2 (ENSCJPG00005008819) #29	UBTD2 (ENSCJPG00005008822)	STK10 (ENSCJPG00005008823)	SH3PXD2B (ENSCJPG00005008824)	NEURL1B (ENSCJPG00005008825)	DUSP1 (ENSCJPG00005008826)	ERGIC1 (ENSCJPG00005008827)	RPL26 (ENSCJPG00005008829)	ATP6V0E1 (ENSCJPG00005008830)
Phasianidae_b	ANCESTRAL SPECIES	18	ENSGT00940000159591	ENSGT00940000159349	ENSGT00940000157139	ENSGT00940000157692.k	ENSGT00940000157692.l	ENSGT00940000157213	ENSGT00940000156944	ENSGT00390000012630.A	ENSGT00960000189299	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT01030000234583.a.b.b.f.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b.h #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a	ENSGT00940000156866
Chicken	MODERN SPECIES	4	FABP6 (ENSGALG00010009202)	ENSGALG00010009268	ENSGALG00010009276	TTC1 (ENSGALG00010009303)	ADRA1B (ENSGALG00010009333)	IL12B (ENSGALG00010009374)	ENSGALG00010009424	FBXO38 (ENSGALG00010011647) #31	HTR4 (ENSGALG00010008169) #30	ENSGALG00010008173 #18	SLC26A2 (ENSGALG00010008174) #18	ENSGALG00010008187	ENSGALG00010008195	PPARGC1B (ENSGALG00010008209) #20	ARHGEF37 (ENSGALG00010008217) #21	CSNK1A1 (ENSGALG00010011991) #22	IL17B (ENSGALG00010011754) #23	PCYOX1L (ENSGALG00010011764) #24	GRPEL2 (ENSGALG00010011784) #25	AFAP1L1 (ENSGALG00010011745) #26	ABLIM3 (ENSGALG00010012297) #27	SH3TC2 (ENSGALG00010012312) #28	ADRB2 (ENSGALG00010012314) #29	UBTD2 (ENSGALG00010012327)	STK10 (ENSGALG00010012358)	SH3PXD2B (ENSGALG00010012382)	NEURL1B (ENSGALG00010012391)	DUSP1 (ENSGALG00010008227)	ERGIC1 (ENSGALG00010009117)	RPL26L1 (ENSGALG00010009170)	ATP6V0E1 (ENSGALG00010009228)
Turkey	MODERN SPECIES	6	SLU7 (ENSMGAG00000002882)	C1QTNF2 (ENSMGAG00000002923)	CCNJL (ENSMGAG00000002930)	TTC1 (ENSMGAG00000002950)	ENSMGAG00000015441	ADRA1B (ENSMGAG00000002990)	IL12B (ENSMGAG00000003001)	ENSMGAG00000018749	ENSMGAG00000003033 #31	ENSMGAG00000003088 #30	ENSMGAG00000003112 #18	SLC26A2 (ENSMGAG00000003118) #18	ENSMGAG00000022852	ENSMGAG00000003134 #27	ARHGEF37 (ENSMGAG00000003214) #21	CSNK1A1 (ENSMGAG00000003239) #22	ENSMGAG00000021310 #23	PCYOX1L (ENSMGAG00000003301) #24	AFAP1L1 (ENSMGAG00000003323) #26	ENSMGAG00000003360 #27	ADRB2 (ENSMGAG00000022062) #29	ENSMGAG00000003447	ENSMGAG00000003464	SH3PXD2B (ENSMGAG00000003508)	ENSMGAG00000003546	DUSP1 (ENSMGAG00000003557)	ERGIC1 (ENSMGAG00000003565)	ENSMGAG00000003585	CREBRF (ENSMGAG00000003597)	BNIP1 (ENSMGAG00000003611)	NKX2-5 (ENSMGAG00000021311)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	151	FLT4 (ENSSCUG00000002935)	ENSSCUG00000002934	ENSSCUG00000002932	HMGXB3 (ENSSCUG00000002931) #17	CSF1R (ENSSCUG00000002929) #16	PDGFRB (ENSSCUG00000002926) #15	CDX1 (ENSSCUG00000002924) #14	SLC6A7 (ENSSCUG00000002922) #13	ENSSCUG00000002920	ENSSCUG00000002919 ##12	ARSI (ENSSCUG00000002918) #11	ENSSCUG00000002917 #10	CD74 (ENSSCUG00000002916) #9	ARHGEF37 (ENSSCUG00000002913) #21	ENSSCUG00000002910 #22	ENSSCUG00000002909 #22	IL17B (ENSSCUG00000002907) #23	PCYOX1L (ENSSCUG00000002906) #24	GRPEL2 (ENSSCUG00000002905) #25	AFAP1L1 (ENSSCUG00000002902) #26	ABLIM3 (ENSSCUG00000002892) #27	SH3TC2 (ENSSCUG00000002891) #28	ADRB2 (ENSSCUG00000002887) #29	UBTD2 (ENSSCUG00000002885)	STK10 (ENSSCUG00000002883)	SH3PXD2B (ENSSCUG00000002881)	NEURL1B (ENSSCUG00000002876)	DUSP1 (ENSSCUG00000002873)	ERGIC1 (ENSSCUG00000002870)	RPL26 (ENSSCUG00000002868)	ENSSCUG00000002866
African ostrich	MODERN SPECIES	151	RNF130 (ENSSCUG00000002936)	FLT4 (ENSSCUG00000002935)	ENSSCUG00000002934	ENSSCUG00000002932	HMGXB3 (ENSSCUG00000002931) #17	CSF1R (ENSSCUG00000002929) #16	PDGFRB (ENSSCUG00000002926) #15	CDX1 (ENSSCUG00000002924) #14	SLC6A7 (ENSSCUG00000002922) #13	ENSSCUG00000002920	ENSSCUG00000002919 ##12	ARSI (ENSSCUG00000002918) #11	ENSSCUG00000002917 #10	CD74 (ENSSCUG00000002916) #9	ARHGEF37 (ENSSCUG00000002913) #21	ENSSCUG00000002910 #22	ENSSCUG00000002909 #22	IL17B (ENSSCUG00000002907) #23	PCYOX1L (ENSSCUG00000002906) #24	GRPEL2 (ENSSCUG00000002905) #25	AFAP1L1 (ENSSCUG00000002902) #26	ABLIM3 (ENSSCUG00000002892) #27	SH3TC2 (ENSSCUG00000002891) #28	ADRB2 (ENSSCUG00000002887) #29	UBTD2 (ENSSCUG00000002885)	STK10 (ENSSCUG00000002883)	SH3PXD2B (ENSSCUG00000002881)	NEURL1B (ENSSCUG00000002876)	DUSP1 (ENSSCUG00000002873)	ERGIC1 (ENSSCUG00000002870)	RPL26 (ENSSCUG00000002868)
Lepidosauria	ANCESTRAL SPECIES	15								ENSGT00390000012630.A	ENSGT01090000260260.a	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
tuatara	MODERN SPECIES	1921								IL12B (ENSSPUG00000019278)	ENSSPUG00000019277	ENSSPUG00000019276	FBXO38 (ENSSPUG00000019275) #31	HTR4 (ENSSPUG00000019274) #30	ENSSPUG00000019272	PPARGC1B (ENSSPUG00000019271) #20	ARHGEF37 (ENSSPUG00000019270) #21	CSNK1A1 (ENSSPUG00000019269) #22
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316	ENSGT00940000156835	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01090000260260.a	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316	ENSGT00940000156835	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01090000260260.a	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C	ENSGT00390000014165.c.a.a
Argentine black and white tegu	MODERN SPECIES	1	KCNMB1 (ENSSMRG00000001503)	KCNIP1 (ENSSMRG00000001464)	ENSSMRG00000001328	ENSSMRG00000001323	ENSSMRG00000001292	ENSSMRG00000001289	ENSSMRG00000001283	ECHS1 (ENSSMRG00000001277)	FBXO38 (ENSSMRG00000001259) #31	HTR4 (ENSSMRG00000001233) #30	ENSSMRG00000001136 #18	SLC26A2 (ENSSMRG00000001051) #18	PPARGC1B (ENSSMRG00000001032) #20	ARHGEF37 (ENSSMRG00000000923) #21	ENSSMRG00000000841	CSNK1A1 (ENSSMRG00000000796) #22	IL17B (ENSSMRG00000000774) #23	PCYOX1L (ENSSMRG00000000762) #24	GRPEL2 (ENSSMRG00000000756) #25	AFAP1L1 (ENSSMRG00000000709) #26	ABLIM3 (ENSSMRG00000000668) #27	SH3TC2 (ENSSMRG00000000562) #28	ADRB2 (ENSSMRG00000000556) #29	ENSSMRG00000000551	UBTD2 (ENSSMRG00000000513)	EFCAB9 (ENSSMRG00000000510)	STK10 (ENSSMRG00000000484)	SH3PXD2B (ENSSMRG00000000416)	NEURL1B (ENSSMRG00000000401)	DUSP1 (ENSSMRG00000000325)	ERGIC1 (ENSSMRG00000000312)
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000014643	ENSPMRG00000014648	KCNMB1 (ENSPMRG00000014652)	KCNIP1 (ENSPMRG00000014664)	ENSPMRG00000014672	ENSPMRG00000014677	ENSPMRG00000014682	ENSPMRG00000014686	ECHS1 (ENSPMRG00000014691)	FBXO38 (ENSPMRG00000014703) #31	HTR4 (ENSPMRG00000014752) #30	ENSPMRG00000014761 #18	SLC26A2 (ENSPMRG00000014766) #18	PPARGC1B (ENSPMRG00000014770) #20	ARHGEF37 (ENSPMRG00000014779) #21	CSNK1A1 (ENSPMRG00000014794) #22	ENSPMRG00000014832	IL17B (ENSPMRG00000014838) #23	PCYOX1L (ENSPMRG00000014840) #24	GRPEL2 (ENSPMRG00000014847) #25	ENSPMRG00000014867	AFAP1L1 (ENSPMRG00000014884) #26	ABLIM3 (ENSPMRG00000014945) #27	SH3TC2 (ENSPMRG00000015037) #28	ADRB2 (ENSPMRG00000015071) #29	STK10 (ENSPMRG00000015086)	EFCAB9 (ENSPMRG00000015112)	SH3PXD2B (ENSPMRG00000015116)	NEURL1B (ENSPMRG00000015130)	DUSP1 (ENSPMRG00000015139)	ERGIC1 (ENSPMRG00000015142)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000154903	ENSGT00530000063787.A	ENSGT00940000161316	ENSGT00940000156835	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01040000241711	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Elapidae	ANCESTRAL SPECIES	2	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01010000228740	ENSGT01010000229209	ENSGT01040000241711	ENSGT01010000230216	ENSGT01030000235731	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818.p	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Indian cobra	MODERN SPECIES	1	ENSNNAG00000001929	ENSNNAG00000001918	ENSNNAG00000001909	ENSNNAG00000001898	ENSNNAG00000001889	ENSNNAG00000001880	ENSNNAG00000001865	ENSNNAG00000001839	ECHS1 (ENSNNAG00000001819)	FBXO38 (ENSNNAG00000001781) #31	HTR4 (ENSNNAG00000001749) #30	ENSNNAG00000001656 #18	SLC26A2 (ENSNNAG00000001567) #18	PPARGC1B (ENSNNAG00000001536) #20	ARHGEF37 (ENSNNAG00000001335) #21	CSNK1A1 (ENSNNAG00000001230) #22	IL17B (ENSNNAG00000001196) #23	PCYOX1L (ENSNNAG00000001092) #24	GRPEL2 (ENSNNAG00000001028) #25	AFAP1L1 (ENSNNAG00000000702) #26	ABLIM3 (ENSNNAG00000000585) #27	SH3TC2 (ENSNNAG00000000550) #28	ADRB2 (ENSNNAG00000000525) #29	UBTD2 (ENSNNAG00000000511)	EFCAB9 (ENSNNAG00000000494)	STK10 (ENSNNAG00000000463)	SH3PXD2B (ENSNNAG00000000415)	NEURL1B (ENSNNAG00000000391)	DUSP1 (ENSNNAG00000000362)	ERGIC1 (ENSNNAG00000000336)	RPL26 (ENSNNAG00000000313)
Elapidae_a	ANCESTRAL SPECIES	11	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01010000228740	ENSGT01010000229209	ENSGT01040000241711	ENSGT01010000230216	ENSGT01030000235731	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818.p	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Acanthophiinae	ANCESTRAL SPECIES	12	ENSGT00950000183039.B.b.b	ENSGT00940000158048	ENSGT00390000012630.A	ENSGT01010000228740	ENSGT01010000229209	ENSGT01040000241711	ENSGT01010000230216	ENSGT01030000235731	ENSGT00940000157609	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000153700 #22	ENSGT00900000143729	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00390000007501	ENSGT00940000156818.p	ENSGT00940000158396	ENSGT00940000157079.a	ENSGT00940000159044	ENSGT00530000063113.C
Eastern brown snake	MODERN SPECIES	6	ENSPTXG00000009382	KCNMB1 (ENSPTXG00000009383)	KCNIP1 (ENSPTXG00000009384)	ENSPTXG00000009385	ENSPTXG00000009386	ENSPTXG00000009387	ENSPTXG00000009388	ECHS1 (ENSPTXG00000009389)	FBXO38 (ENSPTXG00000009390) #31	HTR4 (ENSPTXG00000009391) #30	ENSPTXG00000009392 #18	SLC26A2 (ENSPTXG00000000054) #18	PPARGC1B (ENSPTXG00000000068) #20	ARHGEF37 (ENSPTXG00000000222) #21	ENSPTXG00000000279	CSNK1A1 (ENSPTXG00000000431) #22	IL17B (ENSPTXG00000000473) #23	PCYOX1L (ENSPTXG00000000528) #24	GRPEL2 (ENSPTXG00000000539) #25	AFAP1L1 (ENSPTXG00000000554) #26	ABLIM3 (ENSPTXG00000000575) #27	SH3TC2 (ENSPTXG00000000607) #28	ADRB2 (ENSPTXG00000000624) #29	UBTD2 (ENSPTXG00000000628)	EFCAB9 (ENSPTXG00000000630)	STK10 (ENSPTXG00000000694)	SH3PXD2B (ENSPTXG00000001015)	NEURL1B (ENSPTXG00000001020)	DUSP1 (ENSPTXG00000001023)	ERGIC1 (ENSPTXG00000001026)	RPL26 (ENSPTXG00000001032)
Mainland tiger snake	MODERN SPECIES	4	KCNMB1 (ENSNSUG00000011009)	KCNIP1 (ENSNSUG00000011005)	ENSNSUG00000011003	ENSNSUG00000011001	ENSNSUG00000010996	ENSNSUG00000010995	ENSNSUG00000010989	ECHS1 (ENSNSUG00000010986)	FBXO38 (ENSNSUG00000010869) #31	HTR4 (ENSNSUG00000010865) #30	ENSNSUG00000010831 #18	SLC26A2 (ENSNSUG00000010802) #18	PPARGC1B (ENSNSUG00000010762) #20	ARHGEF37 (ENSNSUG00000010758) #21	ENSNSUG00000010718	CSNK1A1 (ENSNSUG00000010717) #22	ENSNSUG00000010716	IL17B (ENSNSUG00000010709) #23	PCYOX1L (ENSNSUG00000010707) #24	GRPEL2 (ENSNSUG00000010706) #25	AFAP1L1 (ENSNSUG00000010596) #26	ABLIM3 (ENSNSUG00000010584) #27	SH3TC2 (ENSNSUG00000010581) #28	ADRB2 (ENSNSUG00000010579) #29	UBTD2 (ENSNSUG00000010577)	EFCAB9 (ENSNSUG00000010573)	STK10 (ENSNSUG00000010569)	SH3PXD2B (ENSNSUG00000010565)	NEURL1B (ENSNSUG00000010551)	DUSP1 (ENSNSUG00000010548)	ERGIC1 (ENSNSUG00000010544)
Blue-lipped sea krait	MODERN SPECIES	9185																CSNK1A1 (ENSLLTG00000014589) #22
Lizard	MODERN SPECIES	1	ENSACAG00000024493	ENSACAG00000039938	ENSACAG00000015835	ENSACAG00000015834	ENSACAG00000029294	ENSACAG00000025449	ENSACAG00000015809 #31	ENSACAG00000015764 #30	ENSACAG00000035366 #18	SLC26A2 (ENSACAG00000015760) #18	PPARGC1B (ENSACAG00000015737) #20	ENSACAG00000028909	ARHGEF37 (ENSACAG00000015707) #21	ENSACAG00000028117	ENSACAG00000036989	CSNK1A1 (ENSACAG00000015659) #22	IL17B (ENSACAG00000015644) #23	PCYOX1L (ENSACAG00000015622) #24	GRPEL2 (ENSACAG00000015596) #25	AFAP1L1 (ENSACAG00000015542) #26	ABLIM3 (ENSACAG00000015469) #27	ENSACAG00000039080	SH3TC2 (ENSACAG00000015429) #28	ADRB2 (ENSACAG00000015418) #29	ENSACAG00000038795	UBTD2 (ENSACAG00000015415)	ENSACAG00000015404	STK10 (ENSACAG00000015294)	ENSACAG00000036124	SH3PXD2B (ENSACAG00000042684)	ENSACAG00000015261
Anura	ANCESTRAL SPECIES		ENSGT00390000003426	ENSGT00940000160017	ENSGT00530000064714	ENSGT00390000000537	ENSGT00940000153451.a.a.b	ENSGT00940000158129	ENSGT00950000182938.b.b.a	ENSGT00940000158761	ENSGT01090000260260	ENSGT00390000013163 #31	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000153700 #22	ENSGT00940000160854 #23	ENSGT00390000011206.b #24	ENSGT00390000005589.a.b #25	ENSGT00950000183067.a.b.a #26	ENSGT00950000182850.a.b.a.b.b #27	ENSGT00530000063812.B #28	ENSGT00940000159538 #29	ENSGT00940000156641	ENSGT00940000156818	ENSGT00390000004149	ENSGT00940000154966	ENSGT00940000158670	ENSGT00390000005154	ENSGT00940000157856	ENSGT00940000154856.A.a
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000012291	ENSLLEG00000012273	ENSLLEG00000012242	ENSLLEG00000012205	ENSLLEG00000012192	FBXO38 (ENSLLEG00000012045) #31	HTR4 (ENSLLEG00000011727) #30	ENSLLEG00000011675	ENSLLEG00000011619 #18	ENSLLEG00000011579 #18	SLC26A2 (ENSLLEG00000011545) #18	PDE6A (ENSLLEG00000011396) #19	PPARGC1B (ENSLLEG00000011230) #20	ARHGEF37 (ENSLLEG00000010958) #21	ENSLLEG00000010913	CSNK1A1 (ENSLLEG00000010398) #22	IL17B (ENSLLEG00000010266) #23	PCYOX1L (ENSLLEG00000010203) #24	GRPEL2 (ENSLLEG00000010154) #25	AFAP1L1 (ENSLLEG00000009809) #26	ABLIM3 (ENSLLEG00000008655) #27	ENSLLEG00000008540	ENSLLEG00000008519	SH3TC2 (ENSLLEG00000008218) #28	ENSLLEG00000008172	ENSLLEG00000008163	ADRB2 (ENSLLEG00000008145) #29	ENSLLEG00000008087	UBTD2 (ENSLLEG00000008051)	STK10 (ENSLLEG00000007889)	SH3PXD2B (ENSLLEG00000007755)
Frog	MODERN SPECIES	3	yipf5 (ENSXETG00000005469)	kctd16 (ENSXETG00000030030)	ENSXETG00000047589	ENSXETG00000046225	prelid2 (ENSXETG00000027124)	ENSXETG00000043029	grxcr2 (ENSXETG00000032005)	sh3rf2 (ENSXETG00000002319)	lars1 (ENSXETG00000002320)	rbm27 (ENSXETG00000002324)	ENSXETG00000045329	pou4f3 (ENSXETG00000041097)	GPR151 (ENSXETG00000002325)	ENSXETG00000046970	ppp2r2b (ENSXETG00000020864)	csnk1a1 (ENSXETG00000020861) #22	pcyox1l (ENSXETG00000033269) #24	ENSXETG00000048140	grpel2 (ENSXETG00000020835) #25	afap1l1 (ENSXETG00000032942) #26	ablim3 (ENSXETG00000030469) #27	ENSXETG00000047343	sh3tc2 (ENSXETG00000030692) #28	ENSXETG00000045119	adrb2 (ENSXETG00000037096) #29	ubtd2 (ENSXETG00000014428)	ENSXETG00000042783	stk10 (ENSXETG00000014423)	pole4 (ENSXETG00000014422)	sh3pxd2b (ENSXETG00000038056)	ENSXETG00000042376
Coelacanth	MODERN SPECIES	1182										ENSLACG00000012970 #18	SLC26A2 (ENSLACG00000012512) #18	PDE6A (ENSLACG00000012002) #19	ENSLACG00000011710	PPARGC1B (ENSLACG00000011232) #20	ARHGEF37 (ENSLACG00000009628) #21	CSNK1A1 (ENSLACG00000008673) #22	IL17B (ENSLACG00000006880) #23	PCYOX1L (ENSLACG00000006394) #24	GRPEL2 (ENSLACG00000006320) #25	AFAP1L1 (ENSLACG00000004868) #26	ABLIM3 (ENSLACG00000001207) #27
Actinopterygii	ANCESTRAL SPECIES	176	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000161330 #19	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000171091	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b	ENSGT00940000153147	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31
Reedfish	MODERN SPECIES	2	sqstm1 (ENSECRG00000009997)	ENSECRG00000009988	ENSECRG00000009976	ENSECRG00000009962	ENSECRG00000009954	slit3 (ENSECRG00000009684)	cxcl14 (ENSECRG00000009596)	FAM13B (ENSECRG00000009581)	ENSECRG00000009567	KLHL3 (ENSECRG00000009502)	ENSECRG00000009479	hnrnpa0b (ENSECRG00000009472)	spdl1 (ENSECRG00000009440)	SIL1 (ENSECRG00000009423)	ENSECRG00000009410	csnk1a1 (ENSECRG00000009391) #22	FBXO38 (ENSECRG00000009361) #31	ENSECRG00000009342	HAND1 (ENSECRG00000009328)	sap30l (ENSECRG00000009298)	GALNT10 (ENSECRG00000009274)	MFAP3 (ENSECRG00000009255)	FAM114A2 (ENSECRG00000009234)	cnot8 (ENSECRG00000009218)	GEMIN5 (ENSECRG00000009202)	mrpl22 (ENSECRG00000009188)	sgcd (ENSECRG00000009179)	ENSECRG00000009132	rars1 (ENSECRG00000009109)	ENSECRG00000011037	ENSECRG00000011026
Neopterygii	ANCESTRAL SPECIES	164	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000163999.a	ENSGT00940000171091	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b	ENSGT00940000153147	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000160541	ENSGT00940000160487	ENSGT00940000153441.b	ENSGT00940000163511
Spotted gar	MODERN SPECIES	672	ARHGEF37 (ENSLOCG00000012204) #21	ENSLOCG00000012195 #20	pde6a (ENSLOCG00000012187)	SLC26A2 (ENSLOCG00000012182) #18	HTR4 (ENSLOCG00000012176) #30	lman2 (ENSLOCG00000012170)	tmed9 (ENSLOCG00000012165)	b4galt7 (ENSLOCG00000012160)	emx3 (ENSLOCG00000012156)	N4BP3 (ENSLOCG00000012151)	rmnd5b (ENSLOCG00000012143)	KLHL3 (ENSLOCG00000012130)	ENSLOCG00000012121	spdl1 (ENSLOCG00000012111)	SIL1 (ENSLOCG00000012109)	csnk1a1 (ENSLOCG00000012101) #22	FBXO38 (ENSLOCG00000012089) #31	fgfrl1b (ENSLOCG00000012085)	hspa9 (ENSLOCG00000012077)	FCHSD1 (ENSLOCG00000012072)	ENSLOCG00000012060	HDAC3 (ENSLOCG00000012055)	ENSLOCG00000012048	ENSLOCG00000018315	spink2.1 (ENSLOCG00000012042)	neurl1b (ENSLOCG00000012037)	dusp1 (ENSLOCG00000012031)	ergic1 (ENSLOCG00000012027)	flt4 (ENSLOCG00000012009)	ENSLOCG00000012005	ENSLOCG00000011993
Osteoglossocephalai	ANCESTRAL SPECIES	133	ENSGT00940000159747	ENSGT00940000158355	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b	ENSGT00940000153147	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00740000115581.f	ENSGT00940000156736	ENSGT00920000149123.d	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00940000160487	ENSGT00940000153441.b	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b
Osteoglossiformes	ANCESTRAL SPECIES	150		ENSGT00940000159747	ENSGT00940000158355	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00920000149123.d	ENSGT00510000046732.B.j	ENSGT00510000046732.B.i	ENSGT00940000160541	ENSGT00940000160487	ENSGT00940000153441.b	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a.w	ENSGT00940000160633.d	ENSGT00390000013770	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.b
Asian bonytongue	MODERN SPECIES	4	lman2 (ENSSFOG00015003246)	HTR4 (ENSSFOG00015003177) #30	SLC26A2 (ENSSFOG00015026230) #18	pde6a (ENSSFOG00015003096)	ENSSFOG00015024285 #20	ARHGEF37 (ENSSFOG00015003000) #21	slit3 (ENSSFOG00015002876)	cxcl14 (ENSSFOG00015027067)	FAM13B (ENSSFOG00015002807)	KLHL3 (ENSSFOG00015002683)	HNRNPA0 (ENSSFOG00015025597)	HNRNPA0 (ENSSFOG00015029213)	spdl1 (ENSSFOG00015002583)	ENSSFOG00015027544	ENSSFOG00015002569	csnk1a1 (ENSSFOG00015002502) #22	FBXO38 (ENSSFOG00015002400) #31	fgfrl1b (ENSSFOG00015002361)	hspa9 (ENSSFOG00015002266)	gm2a (ENSSFOG00015002248)	FAT2 (ENSSFOG00015002166)	mtnr1al (ENSSFOG00015002133)	SLC36A1 (ENSSFOG00015030401)	atox1 (ENSSFOG00015032700)	sparc (ENSSFOG00015002054)	g3bp1 (ENSSFOG00015001993)	glra1 (ENSSFOG00015033192)	slc25a48 (ENSSFOG00015001917)	cplx2 (ENSSFOG00015001898)	thoc3 (ENSSFOG00015001867)	ENSSFOG00015025339
P. kingsleyae	MODERN SPECIES	50	HTR4 (ENSPKIG00000019566) #30	SLC26A2 (ENSPKIG00000019639) #18	pde6a (ENSPKIG00000019686)	ENSPKIG00000019743 #20	ARHGEF37 (ENSPKIG00000019789) #21	slit3 (ENSPKIG00000019877)	cxcl14 (ENSPKIG00000020045)	FAM13B (ENSPKIG00000020108)	KLHL3 (ENSPKIG00000020218)	HNRNPA0 (ENSPKIG00000020270)	HNRNPA0 (ENSPKIG00000020281)	ENSPKIG00000020290	spdl1 (ENSPKIG00000020315)	SIL1 (ENSPKIG00000020342)	ENSPKIG00000020372	csnk1a1 (ENSPKIG00000020391) #22	FBXO38 (ENSPKIG00000020462) #31	fgfrl1b (ENSPKIG00000020528)	hspa9 (ENSPKIG00000020567)	ENSPKIG00000020631	ENSPKIG00000020656	rell2 (ENSPKIG00000020688)	HDAC3 (ENSPKIG00000020703)	ENSPKIG00000020749	ENSPKIG00000020815	il1rapl2 (ENSPKIG00000020978)	ENSPKIG00000021053	BTK (ENSPKIG00000021084)	ENSPKIG00000021146	gla (ENSPKIG00000021176)	glra4a (ENSPKIG00000021211)
Clupeocephala	ANCESTRAL SPECIES	28	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000165646.B	ENSGT00940000167175	ENSGT00940000154808.a.b	ENSGT00940000153147.a.a	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000156736.d	ENSGT00920000149123.d	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00940000160633.b	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.b	ENSGT00390000017614.f
Otomorpha	ANCESTRAL SPECIES	362										ENSGT00940000165646.B	ENSGT00940000167175	ENSGT00940000154808.a.b	ENSGT00510000047951	ENSGT00940000178312	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000156736.d	ENSGT00940000160541	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b
Otophysi	ANCESTRAL SPECIES	343															ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000160541	ENSGT00940000160487	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b
Characiphysae	ANCESTRAL SPECIES	253															ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000161151	ENSGT00390000013284
Characiphysae_b	ANCESTRAL SPECIES	204				ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000160541	ENSGT00390000013284	ENSGT00940000161151	ENSGT01070000254555	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00920000149123.d
Characoidei	ANCESTRAL SPECIES	270				ENSGT00440000033329.b.a.b	ENSGT00390000013770	ENSGT00440000033895	ENSGT01090000260076.b.a	ENSGT00950000183196.D.b	ENSGT00940000159795	ENSGT00940000160487	ENSGT00940000160541	ENSGT00390000013284	ENSGT00940000161151	ENSGT01070000254555	ENSGT00940000153909.b	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00920000149123.d
Red-bellied piranha	MODERN SPECIES	214	ENSPNAG00000024107	VMA21 (ENSPNAG00000024094)	ENSPNAG00000024003	ENSPNAG00000023135	commd5 (ENSPNAG00000023122)	fam199x (ENSPNAG00000023114)	il1rapl2 (ENSPNAG00000023088)	ENSPNAG00000023035	ENSPNAG00000023009	HDAC3 (ENSPNAG00000022978)	rell2 (ENSPNAG00000022945)	tmem129 (ENSPNAG00000022906)	atoh8 (ENSPNAG00000005882)	ENSPNAG00000022866	ENSPNAG00000022850	csnk1a1 (ENSPNAG00000022839) #22	FBXO38 (ENSPNAG00000022776) #31
Mexicana tetra	MODERN SPECIES	16	ENSAMXG00000029247	pcdh19 (ENSAMXG00000021519)	ENSAMXG00000044027	ENSAMXG00000025017	DIAPH2 (ENSAMXG00000031345)	spdl1 (ENSAMXG00000035150)	ENSAMXG00000037730	gsr (ENSAMXG00000002329)	uqcrq (ENSAMXG00000033448)	BTK (ENSAMXG00000002336)	zgc:101583 (ENSAMXG00000002352)	timm8a (ENSAMXG00000043999)	ENSAMXG00000043715	st3gal5 (ENSAMXG00000043259)	SIL1 (ENSAMXG00000002355)	csnk1a1 (ENSAMXG00000002356) #22	FBXO38 (ENSAMXG00000002358) #31	hspa9 (ENSAMXG00000002363)	ENSAMXG00000032792	ENSAMXG00000042910	ENSAMXG00000037375	tmem129 (ENSAMXG00000002375)	rell2 (ENSAMXG00000041853)	HDAC3 (ENSAMXG00000042915)	ENSAMXG00000037144	MYOT (ENSAMXG00000035312)	ENSAMXG00000039535	ENSAMXG00000007836	ENSAMXG00000035761	il1rapl2 (ENSAMXG00000007823)	fgfrl1a (ENSAMXG00000033222)
Electric eel	MODERN SPECIES	860											rell2 (ENSEEEG00000011045)	tmem129 (ENSEEEG00000011044)	atoh8 (ENSEEEG00000011043)	ENSEEEG00000011042	SIL1 (ENSEEEG00000011040)	csnk1a1 (ENSEEEG00000010851) #22	FBXO38 (ENSEEEG00000010826) #31
Channel catfish	MODERN SPECIES	27	APOOL (ENSIPUG00000014021)	sh2d1ab (ENSIPUG00000014000)	TENM1 (ENSIPUG00000013950)	ENSIPUG00000013878	ASB12 (ENSIPUG00000013867)	ZC4H2 (ENSIPUG00000013851)	EFNB1 (ENSIPUG00000013838)	Commd5 (ENSIPUG00000013793)	rnf128 (ENSIPUG00000013769)	GJB1 (ENSIPUG00000013751)	hprt1 (ENSIPUG00000013746)	fam199x (ENSIPUG00000013715)	hdac3 (ENSIPUG00000013646)	ENSIPUG00000013584	QCR8 (ENSIPUG00000013566)	csnk1a1 (ENSIPUG00000013544) #22	st3gal5 (ENSIPUG00000013530)	atoh8 (ENSIPUG00000013510)	PRELID1 (ENSIPUG00000013482)	mxd3 (ENSIPUG00000013474)	Rnf103 (ENSIPUG00000013447)	Immt (ENSIPUG00000013371)	ptcd3 (ENSIPUG00000013271)	polr1a (ENSIPUG00000013174)	prpf19 (ENSIPUG00000013084)	tcirg1 (ENSIPUG00000013058)	c8h5orf45 (ENSIPUG00000012981)	sqstm1 (ENSIPUG00000013021)	mgat4b (ENSIPUG00000012887)	canx (ENSIPUG00000012736)	maml1 (ENSIPUG00000012722)
Cyprinoidei	ANCESTRAL SPECIES	31	ENSGT00940000157822	ENSGT00940000158789	ENSGT00390000008751.b	ENSGT00940000158469	ENSGT00940000164465	ENSGT00940000154661	ENSGT00390000004029	ENSGT00940000156986	ENSGT00940000165646.B	ENSGT00940000167175	ENSGT00940000154808.a.b.j.b	ENSGT00510000047951	ENSGT00940000178312	ENSGT00940000153909.b	ENSGT01100000265270	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000157645.f.d	ENSGT00940000155521.a.a	ENSGT00390000015484.i	ENSGT01050000244840.A.b.a	ENSGT00940000157465	ENSGT00940000159253	ENSGT00390000008593.a	ENSGT01030000234566.e.b.a.a.a.b	ENSGT00950000183045.C	ENSGT00940000153230.A	ENSGT00940000165522.a	ENSGT00910000144159.B	ENSGT00390000006915.d.j.b	ENSGT00940000156627.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	878											ENSGT00950000183123.k	ENSGT00940000154808.a.b.i	ENSGT00940000153147.a.a.a.b	ENSGT00510000047951.n	ENSGT00940000153909.b.b	ENSGT00940000153700.c #22	ENSGT00390000013163.c #31
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3471														spdl1 (ENSCARG00000065436)	SIL1 (ENSCARG00000065428)	CKIaS (ENSCARG00000065400) #22
Goldfish	MODERN SPECIES	3124				DIAPH2 (ENSCARG00000041291)	glra4a (ENSCARG00000045743)	gla (ENSCARG00000045817)	BTK (ENSCARG00000046080)	zgc:101583 (ENSCARG00000047494)	timm8a (ENSCARG00000047514)	uqcrq (ENSCARG00000047524)	gsr (ENSCARG00000047585)	ENSCARG00000048331	hnrnpa0b (ENSCARG00000048340)	ENSCARG00000048356	SIL1 (ENSCARG00000048376)	csnk1a1 (ENSCARG00000048399) #22	FBXO38 (ENSCARG00000048470) #31	ENSCARG00000048622	PCDH1 (ENSCARG00000048643)
Cyprininae_a	ANCESTRAL SPECIES	286	ENSGT00940000159162.a	ENSGT00940000157822.eb	ENSGT00940000158789.f	ENSGT00390000008751.b.a.b	ENSGT00940000158469.l	ENSGT00940000164465.d	ENSGT00940000154661.c	ENSGT00390000004029.e	ENSGT00940000156986.p	ENSGT00950000183123.k	ENSGT00940000154808.a.b.i	ENSGT00940000153147.a.a.a.b	ENSGT00510000047951.n	ENSGT00940000178312	ENSGT01100000265270	ENSGT00940000153700.c #22	ENSGT00390000013163.c #31
Common carp reference	MODERN SPECIES	20	tnmd (ENSCCRG00000073229)	pcdh19 (ENSCCRG00000019918)	DIAPH2 (ENSCCRG00000074557)	glra4a (ENSCCRG00000026072)	gla (ENSCCRG00000080520)	ENSCCRG00000049315	zgc:101583 (ENSCCRG00000049297)	timm8a (ENSCCRG00000025680)	uqcrq (ENSCCRG00000064290)	gsr (ENSCCRG00000048837)	ENSCCRG00000065960	spdl1 (ENSCCRG00000026244)	ENSCCRG00000053381	spdl1 (ENSCCRG00000037245)	ENSCCRG00000026204	csnk1a1 (ENSCCRG00000030809) #22	ENSCCRG00000049563 #31	ENSCCRG00000021163	ENSCCRG00000079623	ENSCCRG00000059894	ENSCCRG00000040098	ENSCCRG00000070528	ENSCCRG00000040196	rnf130 (ENSCCRG00000005301)	tdo2a (ENSCCRG00000033847)	ENSCCRG00000077911	ENSCCRG00000033857	ENSCCRG00000036898	neil3 (ENSCCRG00000064049)	asb5a (ENSCCRG00000058866)	spata4 (ENSCCRG00000025862)
Golden-line barbel	MODERN SPECIES	514	ENSSGRG00000000814	glra4a (ENSSGRG00000000798)	gla (ENSSGRG00000000788)	BTK (ENSSGRG00000000705)	zgc:101583 (ENSSGRG00000000701)	zgc:101583 (ENSSGRG00000000700)	timm8a (ENSSGRG00000000699)	uqcrq (ENSSGRG00000000698)	gsr (ENSSGRG00000000443)	ENSSGRG00000000423	ENSSGRG00000000422	hnrnpa0b (ENSSGRG00000000419)	spdl1 (ENSSGRG00000000225)	ENSSGRG00000000152	si:ch211-195b11.3 (ENSSGRG00000051423)	csnk1a1 (ENSSGRG00000050659) #22	ENSSGRG00000050625	FBXO38 (ENSSGRG00000050602) #31
Cyprininae	ANCESTRAL SPECIES	454	ENSGT00940000157822.fb	ENSGT00940000158789.e	ENSGT00390000008751.b.a.a	ENSGT00940000158469.k	ENSGT00940000164465.c	ENSGT00940000154661.d	ENSGT00390000004029.f	ENSGT00940000156986.o	ENSGT00940000167175	ENSGT00940000154808.a.b.j.b	ENSGT00510000047951.m.a	ENSGT00940000153147.a.a.a.a.a	ENSGT00510000047951.m.b	ENSGT00940000153909.b.a	ENSGT01100000265270	ENSGT00940000153700.d #22	ENSGT00390000013163.d #31	ENSGT00940000155521.a.a.b	ENSGT00390000015484.i.r	ENSGT01050000244840.A.b.a.i
Goldfish	MODERN SPECIES	5	tnmd (ENSCARG00000040001)	pcdh19 (ENSCARG00000040064)	DIAPH2 (ENSCARG00000040170)	glra4a (ENSCARG00000040777)	gla (ENSCARG00000041102)	BTK (ENSCARG00000041188)	zgc:101583 (ENSCARG00000041385)	timm8a (ENSCARG00000041433)	uqcrq (ENSCARG00000041455)	gsr (ENSCARG00000041523)	ENSCARG00000041973	hnrnpa0b (ENSCARG00000041985)	spdl1 (ENSCARG00000042014)	SIL1 (ENSCARG00000042435)	si:ch211-195b11.3 (ENSCARG00000042543)	CKIa (ENSCARG00000042572) #22	FBXO38 (ENSCARG00000042626) #31	ENSCARG00000042698	ENSCARG00000042713	tdo2a (ENSCARG00000042749)	CTSO (ENSCARG00000043201)	rnf130 (ENSCARG00000043279)	ENSCARG00000027774	ENSCARG00000027783	aga (ENSCARG00000027795)	neil3 (ENSCARG00000027831)	spata4 (ENSCARG00000027841)	gpm6aa (ENSCARG00000027852)	lrit3a (ENSCARG00000027892)	egf (ENSCARG00000027946)	elovl6 (ENSCARG00000028215)
Cyprininae_a	ANCESTRAL SPECIES	134	ENSGT00940000160861.p	ENSGT00940000157039.a.b	ENSGT00480000042679.a.b	ENSGT00940000159162.b	ENSGT00940000157822.fb	ENSGT00940000158789.e	ENSGT00390000008751.b.a.a	ENSGT00940000158469.k	ENSGT00940000164465.c	ENSGT00940000154661.d	ENSGT00390000004029.f	ENSGT00940000156986.o	ENSGT00940000167175	ENSGT00940000153147.a.a.a.a.a	ENSGT00510000047951.m.b	ENSGT00940000153700.d #22	ENSGT00390000013163.d #31	ENSGT00940000157645.f.c.a
Golden-line barbel	MODERN SPECIES	166	ENSSGRG00000052897	taf7 (ENSSGRG00000052896)	elf1 (ENSSGRG00000052894)	tnmd (ENSSGRG00000052893)	pcdh19 (ENSSGRG00000052888)	DIAPH2 (ENSSGRG00000052887)	glra4a (ENSSGRG00000052869)	gla (ENSSGRG00000052864)	BTK (ENSSGRG00000052806)	zgc:101583 (ENSSGRG00000052803)	timm8a (ENSSGRG00000052802)	gsr (ENSSGRG00000052792)	ENSSGRG00000052789	HNRNPA0 (ENSSGRG00000052788)	ENSSGRG00000052787	csnk1a1 (ENSSGRG00000052528) #22	FBXO38 (ENSSGRG00000052490) #31	ENSSGRG00000052483
Common carp reference	MODERN SPECIES	35	ENSCCRG00000001916	elf1 (ENSCCRG00000076887)	taf7 (ENSCCRG00000048654)	tnmd (ENSCCRG00000001855)	pcdh19 (ENSCCRG00000047100)	DIAPH2 (ENSCCRG00000057178)	glra4a (ENSCCRG00000022464)	ENSCCRG00000025705	zgc:101583 (ENSCCRG00000037263)	timm8a (ENSCCRG00000049294)	uqcrq (ENSCCRG00000049292)	gsr (ENSCCRG00000078374)	ENSCCRG00000055210	hnrnpa0b (ENSCCRG00000064384)	spdl1 (ENSCCRG00000056503)	csnk1a1 (ENSCCRG00000068929) #22	ENSCCRG00000007267 #31	ENSCCRG00000007260	ENSCCRG00000018180	ENSCCRG00000073189	ENSCCRG00000068611	ENSCCRG00000052903	ENSCCRG00000063819	ENSCCRG00000042573	ENSCCRG00000042556	rnf130 (ENSCCRG00000042574)	tdo2a (ENSCCRG00000027461)	ENSCCRG00000082491	ENSCCRG00000026040	neil3 (ENSCCRG00000043608)	aga (ENSCCRG00000043616)
Zebrafish	MODERN SPECIES	5	pcdh19 (ENSDARG00000034344)	ENSDARG00000112403	DIAPH2 (ENSDARG00000076060)	glra4a (ENSDARG00000006865)	gla (ENSDARG00000036155)	BTK (ENSDARG00000004433)	zgc:101583 (ENSDARG00000026682)	timm8a (ENSDARG00000023672)	uqcrq (ENSDARG00000029064)	gsr (ENSDARG00000019236)	hnrnpa0l (ENSDARG00000036161)	hnrnpa0b (ENSDARG00000036162)	spdl1 (ENSDARG00000103996)	SIL1 (ENSDARG00000100564)	si:ch211-195b11.3 (ENSDARG00000100582)	csnk1a1 (ENSDARG00000052674) #22	FBXO38 (ENSDARG00000006924) #31	rnasel3 (ENSDARG00000036171)	PCDH1 (ENSDARG00000036175)	ENSDARG00000086483	LECT2 (ENSDARG00000090889)	lect2.1 (ENSDARG00000033227)	F2RL3 (ENSDARG00000079399)	rnf130 (ENSDARG00000089767)	CTSO (ENSDARG00000052855)	tdo2a (ENSDARG00000071429)	ENSDARG00000087599	aga (ENSDARG00000004889)	neil3 (ENSDARG00000020079)	asb5a (ENSDARG00000097938)	spata4 (ENSDARG00000036189)
Clupeiformes	ANCESTRAL SPECIES	200	ENSGT00940000153576.c.a.a.a	ENSGT00390000001774.k	ENSGT00940000162656	ENSGT00390000003751.b	ENSGT00940000156001.d	ENSGT00940000153668.B	ENSGT00940000175691	ENSGT00940000163832	ENSGT00940000155608	ENSGT00940000165332.A	ENSGT00940000164374.B.c.b	ENSGT00940000164685.b	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000156736.d
Atlantic herring	MODERN SPECIES	12	tmx2a (ENSCHAG00000000573)	zdhhc5b (ENSCHAG00000000519)	clp1 (ENSCHAG00000000474)	ENSCHAG00000013774	ENSCHAG00000013753	ENSCHAG00000013723	mif (ENSCHAG00000013705)	ENSCHAG00000013699	ENSCHAG00000013680	ENSCHAG00000013489	ENSCHAG00000013478	spdl1 (ENSCHAG00000013386)	SIL1 (ENSCHAG00000013374)	ENSCHAG00000013344	ENSCHAG00000013324	csnk1a1 (ENSCHAG00000013177) #22	FBXO38 (ENSCHAG00000013026) #31	fgfrl1b (ENSCHAG00000012943)	ENSCHAG00000012926	ENSCHAG00000012914	ENSCHAG00000012906	MYO1E (ENSCHAG00000012807)	ccnb2 (ENSCHAG00000012731)	rnf111 (ENSCHAG00000012427)	ENSCHAG00000012410	ENSCHAG00000012390	ENSCHAG00000012362	ENSCHAG00000012311	ENSCHAG00000012296	ENSCHAG00000012281	nkx1.2lb (ENSCHAG00000012264)
Denticle herring	MODERN SPECIES	9	hmmr (ENSDCDG00000029699)	ENSDCDG00000029688	TENM2 (ENSDCDG00000027366)	ENSDCDG00000027305	ENSDCDG00000027304	pola2 (ENSDCDG00000026640)	CHRM1 (ENSDCDG00000026629)	ENSDCDG00000026627	ENSDCDG00000026577	ENSDCDG00000026572	spdl1 (ENSDCDG00000026501)	SIL1 (ENSDCDG00000026494)	ENSDCDG00000026492	ENSDCDG00000026489	ENSDCDG00000026488	csnk1a1 (ENSDCDG00000026463) #22	FBXO38 (ENSDCDG00000026428) #31	fgfrl1b (ENSDCDG00000026418)	ENSDCDG00000026416	c1galt1c1 (ENSDCDG00000026410)	mcts1 (ENSDCDG00000026409)	gcna (ENSDCDG00000026407)	CETN1 (ENSDCDG00000026402)	nsdhl (ENSDCDG00000026400)	ENSDCDG00000026389	ENSDCDG00000026387	POU3F4 (ENSDCDG00000026384)	rps6kal (ENSDCDG00000019069)	hdx (ENSDCDG00000035133)	ENSDCDG00000035093	APOOL (ENSDCDG00000035069)
Euteleosteomorpha	ANCESTRAL SPECIES	9	ENSGT00940000155983.a.a #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b	ENSGT00950000183137.b.b #20	ENSGT00950000183088.a.a #21	ENSGT00940000159322	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000165646.B	ENSGT00940000167175	ENSGT00940000154808.a.b	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000156736.d	ENSGT00920000149123.d	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00940000160633.b	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.b	ENSGT00390000017614.f
Protacanthopterygii	ANCESTRAL SPECIES	19	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000165646.B	ENSGT00940000153147.a.a	ENSGT00940000158956.d	ENSGT00940000160528.a	ENSGT00940000158675.b	ENSGT00940000158313.a.a	ENSGT00940000157046.E	ENSGT00390000004405.a.c	ENSGT00950000183123	ENSGT00940000154808.a.b	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00940000156736.d	ENSGT00920000149123.d	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00940000165542	ENSGT00940000159795	ENSGT00950000183196.D.b	ENSGT01090000260076.b.a	ENSGT00940000160633.b	ENSGT00440000033895	ENSGT00390000013770	ENSGT00440000033329.b.a.b	ENSGT00940000163031.b.b	ENSGT00390000017614.f
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	320		ENSGT00940000155983.a.a.f.a.a #30	ENSGT00940000156471.b.d	ENSGT00950000183137.b.b.a #20	ENSGT00950000183088.a.a.i #21	ENSGT00940000159322.g.a	ENSGT00980000199741.C	ENSGT00390000000618.a	ENSGT00950000183033.a.b.b.o	ENSGT00940000157891.d	ENSGT00940000165646.B	ENSGT00940000153147.a.a	ENSGT00950000183123.o.a.a.b	ENSGT00510000047951.i	ENSGT00940000153909.b.d	ENSGT00940000153700.e #22	ENSGT00390000013163.g #31	ENSGT00940000156736.d.a	ENSGT00920000149123.d.h.b	ENSGT00940000160541.e	ENSGT00940000165542.a	ENSGT00940000159795.e	ENSGT00950000183196.D.b.j	ENSGT01090000260076.b.a.i	ENSGT00440000033895.b	ENSGT00440000033329.b.a.b.e	ENSGT00940000163031.b.b.c	ENSGT00390000017614.f	ENSGT00940000156803.m	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00950000183189.a.b.b.f
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00940000163509.a.a.a.r	ENSGT00940000156944.a.b.b	ENSGT00990000211098	ENSGT00940000155983.a.a.f.a.a #30	ENSGT00940000156471.b.d	ENSGT00950000183137.b.b.a #20	ENSGT00950000183088.a.a.i #21	ENSGT00940000159322.g.a	ENSGT00980000199741.C	ENSGT00390000000618.a	ENSGT00950000183033.a.b.b.o	ENSGT00940000157891.d	ENSGT00940000154808.a.b.m	ENSGT00510000047951.i	ENSGT00940000153909.b.d	ENSGT00940000153700.e #22	ENSGT00390000013163.g #31	ENSGT00940000156736.d.a	ENSGT00920000149123.d.h.b	ENSGT00940000160541.e	ENSGT00940000165542.a	ENSGT00940000159795.e	ENSGT00950000183196.D.b.j	ENSGT01090000260076.b.a.i	ENSGT00940000160633.b.a	ENSGT00440000033895.b	ENSGT00440000033329.b.a.b.e	ENSGT00940000163031.b.b.c	ENSGT00390000017614.f	ENSGT00940000156803.m	ENSGT00950000182974.a.a.a.a.y.a
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00990000211098	ENSGT00940000155983.a.a.f.b #30	ENSGT00940000156471.b.d	ENSGT00950000183137.b.b.a #20	ENSGT00950000183088.a.a.i #21	ENSGT00940000159322.g.a	ENSGT00980000199741.C	ENSGT00390000000618.a	ENSGT00950000183033.a.b.b.o	ENSGT00940000157891.d	ENSGT01060000253572	ENSGT00940000154808.a.b.m.a	ENSGT00510000047951.i	ENSGT00940000153909.b.d	ENSGT01030000234957.d	ENSGT00940000153700.e #22	ENSGT00390000013163.g #31	ENSGT00940000156736.d.a	ENSGT00920000149123.d.h.b	ENSGT00940000160541.e	ENSGT00940000165542.a	ENSGT00940000159795.e	ENSGT00950000183196.D.b.j	ENSGT01090000260076.b.a.i	ENSGT00940000160633.b.a	ENSGT00440000033895.b	ENSGT00440000033329.b.a.b.e	ENSGT00940000163031.b.b.c	ENSGT00390000017614.f	ENSGT00940000156803.m	ENSGT00950000182974.a.a.a.a.y.a
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT01050000247992	ENSGT00940000156471.b.d	ENSGT00950000183137.b.b.a #20	ENSGT00950000183088.a.a.i #21	ENSGT00940000159322.g.a	ENSGT00980000199741.C	ENSGT00390000000618.a	ENSGT00950000183033.a.b.b.o	ENSGT00940000157891.d	ENSGT01060000253572	ENSGT00940000154808.a.b.m.a	ENSGT00510000047951.i.d	ENSGT00510000047951.i.c	ENSGT00940000153909.b.d	ENSGT01030000234957.d	ENSGT00940000153700.e #22	ENSGT00390000013163.g #31	ENSGT00940000156736.d.a	ENSGT00920000149123.d.h.b	ENSGT00940000160541.e	ENSGT00940000165542.a	ENSGT00940000159795.e	ENSGT00950000183196.D.b.j	ENSGT01090000260076.b.a.i	ENSGT00940000160633.b.a	ENSGT00440000033895.b	ENSGT00440000033329.b.a.b.e	ENSGT00940000163031.b.b.c	ENSGT00390000017614.f	ENSGT00940000156803.m	ENSGT00950000182974.a.a.a.a.y.a
Coho salmon	MODERN SPECIES	10	ENSOKIG00005013033	pde6a (ENSOKIG00005012971)	ENSOKIG00005012960 #20	ENSOKIG00005012948 #21	ENSOKIG00005012944	slit3 (ENSOKIG00005012886)	ENSOKIG00005012866	cxcl14 (ENSOKIG00005012842)	fam13b (ENSOKIG00005012721)	KLHL3 (ENSOKIG00005012034)	ENSOKIG00005011979	ENSOKIG00005011978	ENSOKIG00005011834	spdl1 (ENSOKIG00005011705)	SIL1 (ENSOKIG00005011680)	csnk1a1 (ENSOKIG00005011575) #22	FBXO38 (ENSOKIG00005011418) #31	fgfrl1b (ENSOKIG00005011388)	ENSOKIG00005010369	ENSOKIG00005010313	ENSOKIG00005010307	ENSOKIG00005010259	ENSOKIG00005010232	ENSOKIG00005010121	il1rapl2 (ENSOKIG00005010061)	ENSOKIG00005010044	fam199x (ENSOKIG00005010024)	LONRF3 (ENSOKIG00005009907)	zgc:66433 (ENSOKIG00005009858)	lygl2 (ENSOKIG00005009799)	ids (ENSOKIG00005009728)
Chinook salmon	MODERN SPECIES	13													spdl1 (ENSOTSG00005029003)	SIL1 (ENSOTSG00005029007)	ENSOTSG00005029012	csnk1a1 (ENSOTSG00005029021) #22	FBXO38 (ENSOTSG00005029578) #31	fgfrl1b (ENSOTSG00005029587)	hspa9 (ENSOTSG00005029601)	rell2 (ENSOTSG00005034799)	hdac3 (ENSOTSG00005034802)	ENSOTSG00005035393	ENSOTSG00005035395	il1rapl2 (ENSOTSG00005035398)	ENSOTSG00005035405	fam199x (ENSOTSG00005035413)	LONRF3 (ENSOTSG00005035425)	zgc:66433 (ENSOTSG00005035479)	lygl2 (ENSOTSG00005035480)	ids (ENSOTSG00005035481)	ENSOTSG00005035482
Rainbow trout	MODERN SPECIES	5	pde6a (ENSOMYG00000015465)	ENSOMYG00000015444 #20	ENSOMYG00000015421 #21	slit3 (ENSOMYG00000015271)	casp (ENSOMYG00000015137)	ENSOMYG00000050397	cxcl14 (ENSOMYG00000015124)	fam13b (ENSOMYG00000014467)	ENSOMYG00000014276	ENSOMYG00000068248	roa0 (ENSOMYG00000014228)	ENSOMYG00000057051	spdl1 (ENSOMYG00000023860)	ENSOMYG00000014186	ENSOMYG00000059381	csnk1a1 (ENSOMYG00000014106) #22	ENSOMYG00000013966 #31	ENSOMYG00000013894	ENSOMYG00000013135	ENSOMYG00000013022	ENSOMYG00000013014	ENSOMYG00000012808	ENSOMYG00000012746	ENSOMYG00000051071	ENSOMYG00000012713	ENSOMYG00000012626	ENSOMYG00000056565	fam199x (ENSOMYG00000012581)	ENSOMYG00000012538	ENSOMYG00000058948	zgc:66433 (ENSOMYG00000012500)
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000155983.a.a.f.a.a #30	ENSGT01100000263544.c.a.a.a.d #18	ENSGT00940000156471.b.d	ENSGT00950000183137.b.b.a #20	ENSGT00950000183088.a.a.i #21	ENSGT00940000159322.g.a	ENSGT00980000199741.C	ENSGT00390000000618.a	ENSGT00950000183033.a.b.b.o	ENSGT00940000157891.d	ENSGT00940000165646.B	ENSGT00940000153147.a.a	ENSGT00950000183123.o.a.a.b	ENSGT00510000047951.i	ENSGT00940000153909.b.d	ENSGT00940000153700.e #22	ENSGT00390000013163.g #31	ENSGT00940000156736.d.a	ENSGT00920000149123.d.h.b	ENSGT00940000160541.e	ENSGT00940000165542.a	ENSGT00940000159795.e	ENSGT00950000183196.D.b.j	ENSGT01090000260076.b.a.i	ENSGT00440000033895.b	ENSGT00440000033329.b.a.b.e	ENSGT00940000163031.b.b.c	ENSGT00390000017614.f	ENSGT00940000156803.m	ENSGT00950000182974.a.a.a.a.y.a	ENSGT00950000183189.a.b.b.f
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000042670	ENSSSAG00000042720 #30	ENSSSAG00000042753 #18	pde6a (ENSSSAG00000042795)	ENSSSAG00000044482 #20	ARHGEF37 (ENSSSAG00000044512) #21	slit3 (ENSSSAG00000044758)	ENSSSAG00000047093	cxcl14 (ENSSSAG00000047101)	fam13b (ENSSSAG00000047130)	ENSSSAG00000046126	ENSSSAG00000085929	ENSSSAG00000093198	spdl1 (ENSSSAG00000047397)	ENSSSAG00000047423	csnk1a1 (ENSSSAG00000047433) #22	fbxo38 (ENSSSAG00000047516) #31	ENSSSAG00000047900	ENSSSAG00000047960	ENSSSAG00000052912	ENSSSAG00000052932	ENSSSAG00000052986	ENSSSAG00000054771	ENSSSAG00000053419	fam199x (ENSSSAG00000053452)	lonrf3 (ENSSSAG00000053472)	zgc:66433 (ENSSSAG00000053506)	lygl2 (ENSSSAG00000053544)	ids (ENSSSAG00000053581)	AFF2 (ENSSSAG00000053621)	fmr1 (ENSSSAG00000053722)
River trout	MODERN SPECIES	22	ENSSTUG00000032248	ENSSTUG00000032290	HTR4 (ENSSTUG00000032302) #30	pde6a (ENSSTUG00000032347)	ENSSTUG00000032766 #20	ENSSTUG00000032787 #21	slit3 (ENSSTUG00000033027)	ENSSTUG00000038696	cxcl14 (ENSSTUG00000038706)	fam13b (ENSSTUG00000038726)	KLHL3 (ENSSTUG00000038835)	ENSSTUG00000039022	spdl1 (ENSSTUG00000039037)	ENSSTUG00000039066	ENSSTUG00000039082	csnk1a1 (ENSSTUG00000039095) #22	FBXO38 (ENSSTUG00000039245) #31	fgfrl1b (ENSSTUG00000039436)	hspa9 (ENSSTUG00000039509)	ENSSTUG00000042612	hdac3 (ENSSTUG00000042642)	ENSSTUG00000042842	ENSSTUG00000042915	ENSSTUG00000043050	il1rapl2 (ENSSTUG00000043062)	fam199x (ENSSTUG00000043150)	ENSSTUG00000043207	LONRF3 (ENSSTUG00000043209)	zgc:66433 (ENSSTUG00000043232)	zgc:162941 (ENSSTUG00000043310)	AFF2 (ENSSTUG00000043367)
Huchen	MODERN SPECIES	424											hnrnpa0l (ENSHHUG00000003148)	ENSHHUG00000003159	spdl1 (ENSHHUG00000003176)	SIL1 (ENSHHUG00000003183)	ENSHHUG00000003192	csnk1a1 (ENSHHUG00000003199) #22	FBXO38 (ENSHHUG00000003834) #31	fgfrl1b (ENSHHUG00000003840)	hspa9 (ENSHHUG00000003849)	ENSHHUG00000004293	hdac3 (ENSHHUG00000004298)	ENSHHUG00000004408	ENSHHUG00000004420	ENSHHUG00000005360	il1rapl2 (ENSHHUG00000005364)
Salmoninae	ANCESTRAL SPECIES	51					ENSGT00940000159322.g.b	ENSGT00390000000618.b	ENSGT00950000183033.a.b.b.p	ENSGT00940000157891.c	ENSGT00950000183123.p	ENSGT00940000154808.a.b.m	ENSGT00950000183123.o.a.a.a	ENSGT00940000154808.a.b.n	ENSGT00510000047951.j	ENSGT00940000153909.b.c	ENSGT01030000234957	ENSGT00940000153700.f #22	ENSGT00390000013163.h #31	ENSGT00940000156736.d.b.b	ENSGT00940000156736.d.b.a.a	ENSGT00920000149123.d.h.a	ENSGT00510000046732.B	ENSGT00940000160541.f	ENSGT00940000160487	ENSGT00940000165542.b	ENSGT00940000159795.f	ENSGT00950000183196.D.b.i	ENSGT01090000260076.b.a.j	ENSGT00940000160633.b	ENSGT00440000033895.a	ENSGT00390000013770	ENSGT00440000033329.b.a.b.f
Salmoninae_a	ANCESTRAL SPECIES	41	ENSGT00940000157139.a	ENSGT00940000155983.a.a.e #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b.c	ENSGT00950000183137.b.b.b #20	ENSGT00950000183088.a.a.j #21	ENSGT00940000159322.g.b	ENSGT00390000000618.b	ENSGT00950000183033.a.b.b.p	ENSGT00940000157891.c	ENSGT00950000183123.p	ENSGT00940000154808.a.b.n	ENSGT00510000047951.j	ENSGT00940000153909.b.c	ENSGT01030000234957	ENSGT00940000153700.f #22	ENSGT00390000013163.h #31	ENSGT00940000156736.d.b.b	ENSGT00940000156736.d.b.a.a	ENSGT00920000149123.d.h.a	ENSGT00510000046732.B	ENSGT00940000160541.f	ENSGT00940000160487	ENSGT00940000165542.b	ENSGT00940000159795.f	ENSGT00950000183196.D.b.i	ENSGT01090000260076.b.a.j	ENSGT00940000160633.b.b	ENSGT00440000033895.a	ENSGT00390000013770	ENSGT00440000033329.b.a.b.f
Salmo	ANCESTRAL SPECIES	47	ENSGT00940000157139.a	ENSGT00940000155983.a.a.e #30	ENSGT01100000263544.c.a.a.a.c #18	ENSGT00940000156471.b.c	ENSGT00950000183137.b.b.b #20	ENSGT00950000183088.a.a.j #21	ENSGT00940000159322.g.b	ENSGT00390000000618.b	ENSGT00950000183033.a.b.b.p	ENSGT00940000157891.c	ENSGT00950000183123.p	ENSGT00940000154808.a.b.m	ENSGT00940000154808.a.b.n	ENSGT00940000153909.b.c	ENSGT01030000234957	ENSGT00940000153700.f #22	ENSGT00390000013163.h #31	ENSGT00940000156736.d.b.b	ENSGT00920000149123.d.h.a	ENSGT00510000046732.B	ENSGT00940000160541.f	ENSGT00940000160487	ENSGT00940000159795.f	ENSGT00950000183196.D.b.i	ENSGT01090000260076.b.a.j	ENSGT00940000160633.b.b	ENSGT00440000033895.a	ENSGT00390000013770	ENSGT00440000033329.b.a.b.f	ENSGT00940000163031.b.b.d	ENSGT00940000156803.n
River trout	MODERN SPECIES	4	SLC26A2 (ENSSTUG00000012429) #18	pde6a (ENSSTUG00000012475)	ENSSTUG00000013096 #20	ARHGEF37 (ENSSTUG00000013119) #21	ENSSTUG00000013184	slit3 (ENSSTUG00000013247)	ENSSTUG00000015470	cxcl14 (ENSSTUG00000015479)	fam13b (ENSSTUG00000015516)	KLHL3 (ENSSTUG00000015762)	ENSSTUG00000015880	HNRNPA0 (ENSSTUG00000015884)	HNRNPA0 (ENSSTUG00000015893)	SIL1 (ENSSTUG00000015948)	ENSSTUG00000026257	csnk1a1 (ENSSTUG00000026284) #22	fgfrl1b (ENSSTUG00000026623)	hspa9 (ENSSTUG00000026641)	ENSSTUG00000026880	ENSSTUG00000026890	hdac3 (ENSSTUG00000026895)	ENSSTUG00000026926	ENSSTUG00000026940	il1rapl2 (ENSSTUG00000027039)	ENSSTUG00000027042	fam199x (ENSSTUG00000027052)	commd5 (ENSSTUG00000027075)	ENSSTUG00000027086	zgc:66433 (ENSSTUG00000027094)	ids (ENSSTUG00000027144)	AFF2 (ENSSTUG00000027163)
Atlantic salmon	MODERN SPECIES	28	pde6a (ENSSSAG00000005113)	ENSSSAG00000040843 #20	ENSSSAG00000112742	ARHGEF37 (ENSSSAG00000040862) #21	slit3 (ENSSSAG00000041168)	ENSSSAG00000098992	cxcl14 (ENSSSAG00000044980)	fam13b (ENSSSAG00000045061)	ENSSSAG00000047284	ENSSSAG00000047146	hnrnpa0l (ENSSSAG00000121827)	ENSSSAG00000112982	ENSSSAG00000108175	ENSSSAG00000105748	ENSSSAG00000047219	csnk1a1 (ENSSSAG00000047236) #22	ENSSSAG00000091745	ENSSSAG00000047293 #31	ENSSSAG00000109848	GRP75 (ENSSSAG00000047778)	fchsd1 (ENSSSAG00000054146)	ENSSSAG00000111372	hdac3 (ENSSSAG00000054212)	ENSSSAG00000054712	ENSSSAG00000053042	ENSSSAG00000057079	ENSSSAG00000104195	fam199x (ENSSSAG00000108796)	ENSSSAG00000057087	commd5 (ENSSSAG00000057116)	ENSSSAG00000057147
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b.c	ENSGT00950000183137.b.b.b #20	ENSGT00950000183088.a.a.j #21	ENSGT00940000159322.g.b	ENSGT00390000000618.b	ENSGT00950000183033.a.b.b.p	ENSGT00940000157891.c	ENSGT00950000183123.p	ENSGT00940000154808.a.b.m.b	ENSGT00940000165646.B	ENSGT00940000154808.a.b.n	ENSGT00510000047951.j	ENSGT00940000153909.b.c	ENSGT01030000234957.c	ENSGT00940000153700.f #22	ENSGT00940000156736.d.b.a.a	ENSGT00920000149123.d.h.a	ENSGT00510000046732.B	ENSGT00940000160541.f	ENSGT00940000165542.b	ENSGT00940000159795.f	ENSGT00950000183196.D.b.i	ENSGT01090000260076.b.a.j	ENSGT00940000160633.b.b	ENSGT00440000033895.a	ENSGT00390000013770	ENSGT00440000033329.b.a.b.f	ENSGT00940000163031.b.b.d	ENSGT00940000156803.n	ENSGT00950000182974.a.a.a.a.y.b
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00940000157139.a	ENSGT00940000155983.a.a.e #30	ENSGT01100000263544.c.a.a.a #18	ENSGT00940000156471.b.c	ENSGT00950000183137.b.b.b #20	ENSGT00950000183088.a.a.j #21	ENSGT00940000159322.g.b	ENSGT00390000000618.b	ENSGT00950000183033.a.b.b.p	ENSGT00940000157891.c	ENSGT00950000183123.p	ENSGT00940000154808.a.b.m.b	ENSGT00510000047951.j	ENSGT00940000153909.b.c	ENSGT01030000234957.c	ENSGT00940000153700.f #22	ENSGT00940000156736.d.b.a.a	ENSGT00920000149123.d.h.a	ENSGT00510000046732.B	ENSGT00940000160541.f	ENSGT00940000165542.b	ENSGT00940000159795.f	ENSGT00950000183196.D.b.i	ENSGT01090000260076.b.a.j	ENSGT00940000160633.b.b	ENSGT00440000033895.a	ENSGT00390000013770	ENSGT00440000033329.b.a.b.f	ENSGT00940000163031.b.b.d	ENSGT00940000156803.n	ENSGT00950000182974.a.a.a.a.y.b
Coho salmon	MODERN SPECIES	6	HTR4 (ENSOKIG00005039049) #30	SLC26A2 (ENSOKIG00005039024) #18	pde6a (ENSOKIG00005035700)	ENSOKIG00005035536 #20	ARHGEF37 (ENSOKIG00005035521) #21	ENSOKIG00005035500	slit3 (ENSOKIG00005034059)	cxcl14 (ENSOKIG00005033953)	fam13b (ENSOKIG00005033929)	ENSOKIG00005033912	KLHL3 (ENSOKIG00005033818)	ENSOKIG00005033804	HNRNPA0 (ENSOKIG00005033788)	SIL1 (ENSOKIG00005021886)	ENSOKIG00005021876	CSNK1A1 (ENSOKIG00005021812) #22	ENSOKIG00005021756	hspa9 (ENSOKIG00005021687)	ENSOKIG00005021639	ENSOKIG00005021609	hdac3 (ENSOKIG00005021415)	ENSOKIG00005021378	ENSOKIG00005021235	ENSOKIG00005021208	IL1RAPL2 (ENSOKIG00005021197)	ENSOKIG00005021187	fam199x (ENSOKIG00005021158)	commd5 (ENSOKIG00005021144)	LONRF3 (ENSOKIG00005021136)	zgc:66433 (ENSOKIG00005021098)	ids (ENSOKIG00005021043)
Chinook salmon	MODERN SPECIES	32	HTR4 (ENSOTSG00005011484) #30	SLC26A2 (ENSOTSG00005011483) #18	pde6a (ENSOTSG00005009049)	ENSOTSG00005009036 #20	ARHGEF37 (ENSOTSG00005009031) #21	ENSOTSG00005009028	ENSOTSG00005009025	cxcl14 (ENSOTSG00005009021)	fam13b (ENSOTSG00005009017)	KLHL3 (ENSOTSG00005009014)	ENSOTSG00005009012	HNRNPA0 (ENSOTSG00005009011)	spdl1 (ENSOTSG00005009010)	SIL1 (ENSOTSG00005009008)	ENSOTSG00005009007	csnk1a1 (ENSOTSG00005009001) #22	ENSOTSG00005008996	fgfrl1b (ENSOTSG00005008995)	hspa9 (ENSOTSG00005008985)	ENSOTSG00005008982	rell2 (ENSOTSG00005008980)	hdac3 (ENSOTSG00005008964)	ENSOTSG00005008962	ENSOTSG00005008960	il1rapl2 (ENSOTSG00005008955)	ENSOTSG00005008954	fam199x (ENSOTSG00005008951)	commd5 (ENSOTSG00005008944)	ENSOTSG00005008942	zgc:66433 (ENSOTSG00005008939)	ids (ENSOTSG00005008935)
Rainbow trout	MODERN SPECIES	23	ENSOMYG00000016970 #20	ARHGEF37 (ENSOMYG00000016893) #21	ENSOMYG00000075355	ENSOMYG00000073840	ENSOMYG00000059931	slit3 (ENSOMYG00000062685)	cxcl14 (ENSOMYG00000016815)	fam13b (ENSOMYG00000016762)	ENSOMYG00000016685	ENSOMYG00000016664	ENSOMYG00000016653	spdl1 (ENSOMYG00000016627)	ENSOMYG00000016618	ENSOMYG00000016608	ENSOMYG00000076093	csnk1a1 (ENSOMYG00000016595) #22	ENSOMYG00000016584	ENSOMYG00000016371	ENSOMYG00000016338	ENSOMYG00000070081	ENSOMYG00000012519	ENSOMYG00000012377	ENSOMYG00000012345	ENSOMYG00000077312	ENSOMYG00000012332	ENSOMYG00000045242	ENSOMYG00000073707	ENSOMYG00000045234	ENSOMYG00000052516	ENSOMYG00000076308	fam199x (ENSOMYG00000045224)
Huchen	MODERN SPECIES	1435								cxcl14 (ENSHHUG00000031471)	fam13b (ENSHHUG00000031411)	KLHL3 (ENSHHUG00000031359)	ENSHHUG00000031355	HNRNPA0 (ENSHHUG00000031346)	ENSHHUG00000031339	spdl1 (ENSHHUG00000031310)	SIL1 (ENSHHUG00000031304)	csnk1a1 (ENSHHUG00000031169) #22	FBXO38 (ENSHHUG00000031148) #31	fgfrl1b (ENSHHUG00000031144)
Northern pike	MODERN SPECIES	3	ENSELUG00000015200	HTR4 (ENSELUG00000015146) #30	SLC26A2 (ENSELUG00000015049) #18	pde6a (ENSELUG00000015021)	ENSELUG00000014929 #20	ARHGEF37 (ENSELUG00000014865) #21	slit3 (ENSELUG00000014761)	cxcl14 (ENSELUG00000014628)	fam13b (ENSELUG00000014560)	KLHL3 (ENSELUG00000014442)	ENSELUG00000014398	ENSELUG00000014407	spdl1 (ENSELUG00000014382)	ENSELUG00000014369	ENSELUG00000014358	csnk1a1 (ENSELUG00000014326) #22	FBXO38 (ENSELUG00000014216) #31	fgfrl1b (ENSELUG00000014184)	hspa9 (ENSELUG00000014148)	ENSELUG00000014087	ENSELUG00000014038	hdac3 (ENSELUG00000013991)	ENSELUG00000013931	ENSELUG00000013868	il1rapl2 (ENSELUG00000013734)	fam199x (ENSELUG00000013618)	commd5 (ENSELUG00000013602)	LONRF3 (ENSELUG00000013594)	zgc:66433 (ENSELUG00000013531)	lyg2 (ENSELUG00000030629)	ids (ENSELUG00000013417)
Acanthomorphata	ANCESTRAL SPECIES	233								ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000162861	ENSGT00940000164256	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000002313
Cod	MODERN SPECIES	1	SORBS2 (ENSGMOG00000023688)	ENSGMOG00000037150	ENSGMOG00000023143	ENSGMOG00000015336	slbp (ENSGMOG00000015352)	ENSGMOG00000033379	ENSGMOG00000032233	ENSGMOG00000029760	nkx1.2lb (ENSGMOG00000030470)	ENSGMOG00000027226	ENSGMOG00000029384	ENSGMOG00000000437	ENSGMOG00000034211	ENSGMOG00000000666	ENSGMOG00000036364	csnk1a1 (ENSGMOG00000009889) #22	ENSGMOG00000026482	ENSGMOG00000011264 #31	ENSGMOG00000000508	ENSGMOG00000033547	ENSGMOG00000000483	ENSGMOG00000015139	ENSGMOG00000015071	ENSGMOG00000028021	ENSGMOG00000027419	ENSGMOG00000027856	ENSGMOG00000032584	ENSGMOG00000032044	ENSGMOG00000028051	ENSGMOG00000034608	ENSGMOG00000030650
Euacanthomorphacea	ANCESTRAL SPECIES	63	ENSGT00510000046732.B	ENSGT00940000159799	ENSGT00990000205617	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000010980	ENSGT00940000159403	ENSGT00570000079101.a.b	ENSGT00940000162861	ENSGT00940000164256	ENSGT00510000047951	ENSGT00940000178312	ENSGT00940000153909.b	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000008738	ENSGT00390000009871	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000002313
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005001817	ENSMMDG00005001819	ENSMMDG00005001824	hars (ENSMMDG00005001930)	dnd1 (ENSMMDG00005006554)	ENSMMDG00005006651	gfra3 (ENSMMDG00005006653)	zgc:153146 (ENSMMDG00005006655)	hvcn1 (ENSMMDG00005006658)	ENSMMDG00005006660	nkx1.2lb (ENSMMDG00005006662)	uvssa (ENSMMDG00005006663)	spdl1 (ENSMMDG00005006667)	ENSMMDG00005006668	ENSMMDG00005006670	csnk1a1 (ENSMMDG00005006673) #22	FBXO38 (ENSMMDG00005006697) #31	ENSMMDG00005006721	ENSMMDG00005006724	tmem129 (ENSMMDG00005006728)	atoh8 (ENSMMDG00005006731)	magt1 (ENSMMDG00005006749)	ENSMMDG00005007568	ENSMMDG00005007572	igbp1 (ENSMMDG00005007574)	abhd18 (ENSMMDG00005007579)	rnf103 (ENSMMDG00005007585)	immt (ENSMMDG00005007617)	CMAS (ENSMMDG00005007980)
Percomorphaceae	ANCESTRAL SPECIES	127															ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000009871	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413
Tiger tail seahorse	MODERN SPECIES	301	trappc11 (ENSHCOG00000013174)	ENSHCOG00000013188	pcdh10b (ENSHCOG00000013201)	ENSHCOG00000000382	ENSHCOG00000013232	immt (ENSHCOG00000000624)	slbp (ENSHCOG00000013425)	ENSHCOG00000013452	igbp1 (ENSHCOG00000013458)	abhd18 (ENSHCOG00000013486)	rnf103 (ENSHCOG00000013512)	enpp6 (ENSHCOG00000000755)	STOX2 (ENSHCOG00000013559)	ENSHCOG00000013567	ENSHCOG00000013580	csnk1a1 (ENSHCOG00000013616) #22	FBXO38 (ENSHCOG00000013636) #31	magt1 (ENSHCOG00000013660)	tmem129 (ENSHCOG00000013681)	ENSHCOG00000013690	ENSHCOG00000013700	SRP72 (ENSHCOG00000013760)	zgc:92045 (ENSHCOG00000013779)
Percomorphaceae_B	ANCESTRAL SPECIES	14													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a	ENSGT01030000234904	ENSGT00980000198976	ENSGT00940000156295.h
Ovalentaria	ANCESTRAL SPECIES	15													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427
Atherinomorphae	ANCESTRAL SPECIES	9													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000002414	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427	ENSGT00940000155249.h	ENSGT00940000154953.a
Oryzias	ANCESTRAL SPECIES	37			ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000002414	ENSGT00390000014635.d	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00980000199752	ENSGT00940000153700 #22	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000170279	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00940000166427	ENSGT00940000156295.h	ENSGT00940000158277.a	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341
Oryzias_b	ANCESTRAL SPECIES	23	ENSGT00940000154194.c.a	ENSGT01090000261097	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000002414	ENSGT00390000014635.d	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00980000199752	ENSGT00940000153700 #22	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000170279	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00940000166427	ENSGT00940000156295.h	ENSGT00940000158277.a	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000153596.A	ENSGT00940000155244.d	ENSGT00940000155341
Javanese ricefish	MODERN SPECIES	1	LINGO2 (ENSOJAG00000017155)	eif4ea (ENSOJAG00000017163)	ENSOJAG00000017175	mlsl (ENSOJAG00000017188)	hars (ENSOJAG00000017365)	dnd1 (ENSOJAG00000017775)	gfra3 (ENSOJAG00000017863)	rnf103 (ENSOJAG00000017970)	ENSOJAG00000018053	tmem129 (ENSOJAG00000018057)	igbp1 (ENSOJAG00000018068)	abhd18 (ENSOJAG00000018082)	enpp6 (ENSOJAG00000018146)	STOX2 (ENSOJAG00000018218)	ENSOJAG00000018248	csnk1a1 (ENSOJAG00000018263) #22	ENSOJAG00000018349	ENSOJAG00000018410	immt (ENSOJAG00000018422)	ENSOJAG00000018477	ENSOJAG00000018495	NOCT (ENSOJAG00000018529)	ENSOJAG00000018545	pcdh18b (ENSOJAG00000018654)	pcdh10b (ENSOJAG00000018751)	ENSOJAG00000019207	tgfbi (ENSOJAG00000019238)	exosc3 (ENSOJAG00000019792)	b4galt1l (ENSOJAG00000019811)	ENSOJAG00000019832	noa1 (ENSOJAG00000019959)
Indian medaka	MODERN SPECIES	16	KLHL3 (ENSOMEG00000011648)	fam13b (ENSOMEG00000011594)	cxcl14 (ENSOMEG00000011511)	LINGO2 (ENSOMEG00000011496)	eif4ea (ENSOMEG00000011486)	ENSOMEG00000011471	mlsl (ENSOMEG00000011463)	hars (ENSOMEG00000011434)	dnd1 (ENSOMEG00000011374)	gfra3 (ENSOMEG00000011363)	ENSOMEG00000011350	FBXO38 (ENSOMEG00000011335) #31	rnf103 (ENSOMEG00000011292)	magt1 (ENSOMEG00000011253)	ENSOMEG00000011116	csnk1a1 (ENSOMEG00000011213) #22	tmem129 (ENSOMEG00000011099)	igbp1 (ENSOMEG00000011062)	abhd18 (ENSOMEG00000011045)	enpp6 (ENSOMEG00000011026)	STOX2 (ENSOMEG00000010994)	ENSOMEG00000010971	ENSOMEG00000010940	slbp (ENSOMEG00000010818)	immt (ENSOMEG00000000257)	ENSOMEG00000010759	ENSOMEG00000010751	NOCT (ENSOMEG00000010743)	ENSOMEG00000010720	pcdh18b (ENSOMEG00000010666)	pcdh10b (ENSOMEG00000010602)
Oryzias_a	ANCESTRAL SPECIES	19	ENSGT00940000156627.a	ENSGT00390000006915.d.j.b	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00940000159225	ENSGT00940000165282.a	ENSGT00390000006413	ENSGT00390000012030.b.a	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000002414	ENSGT00390000014635.d	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00980000199752	ENSGT00940000153700 #22	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000154194.c.a	ENSGT00940000156665.a	ENSGT00390000000618	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000154808.a.b.k	ENSGT00940000154808.a.b.l	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f
Japanese Medaka HdrR	MODERN SPECIES	1	mlsl (ENSORLG00000020604)	hars (ENSORLG00000020605)	dnd1 (ENSORLG00000025449)	gfra3 (ENSORLG00000020608)	FBXO38 (ENSORLG00000020610) #31	ENSORLG00000023176	rnf103 (ENSORLG00000025144)	magt1 (ENSORLG00000020616)	ENSORLG00000029142	tmem129 (ENSORLG00000020619)	igbp1 (ENSORLG00000025316)	abhd18 (ENSORLG00000020624)	enpp6 (ENSORLG00000020628)	ENSORLG00000020633	ENSORLG00000025809	csnk1a1 (ENSORLG00000020637) #22	ENSORLG00000024082	ENSORLG00000024887	ENSORLG00000027755	immt (ENSORLG00000020645)	eif4ea (ENSORLG00000020641)	LINGO2 (ENSORLG00000000190)	ENSORLG00000026571	cxcl14 (ENSORLG00000000201)	fam13b (ENSORLG00000000207)	KLHL3 (ENSORLG00000000214)	ENSORLG00000024793	ENSORLG00000024157	ENSORLG00000027074	ENSORLG00000022539	maea (ENSORLG00000000230)
Chinese medaka	MODERN SPECIES	207						gfra3 (ENSOSIG00000022905)	rnf103 (ENSOSIG00000022909)	magt1 (ENSOSIG00000022916)	ENSOSIG00000022927	tmem129 (ENSOSIG00000022929)	igbp1 (ENSOSIG00000022930)	ENSOSIG00000022931	enpp6 (ENSOSIG00000022935)	STOX2 (ENSOSIG00000022939)	ENSOSIG00000022940	csnk1a1 (ENSOSIG00000022951) #22	ENSOSIG00000022969	ENSOSIG00000022975
Cyprinodontiformes	ANCESTRAL SPECIES	8													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000002414	ENSGT00390000014635.e.a	ENSGT00970000197643	ENSGT00390000014635.f	ENSGT00390000009871	ENSGT00390000002313	ENSGT00390000008738	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h
Cyprinodontoidei	ANCESTRAL SPECIES	100												ENSGT00390000014635.e.a	ENSGT00390000002414	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000006413	ENSGT00390000012030.b.a
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00440000037338	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00940000166427	ENSGT00940000156295.h	ENSGT00940000158277.a	ENSGT00980000198976	ENSGT00390000008738	ENSGT00390000002313	ENSGT00390000009871	ENSGT00390000014635.f	ENSGT00970000197643	ENSGT00390000002414	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000013284	ENSGT00940000161151	ENSGT00390000006413	ENSGT00390000012030.b.a
Poecilia	ANCESTRAL SPECIES	134													ENSGT00940000158457	ENSGT00390000002414	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000013284
NAME_6	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Amazon molly	MODERN SPECIES	1127																csnk1a1 (ENSPFOG00000009087) #22
Sailfin molly	MODERN SPECIES	1617																csnk1a1 (ENSPLAG00000014275) #22
Guppy	MODERN SPECIES	27															STOX2 (ENSPREG00000002841)	csnk1a1 (ENSPREG00000002798) #22	FBXO38 (ENSPREG00000002737) #31	ENSPREG00000002718	tmem129 (ENSPREG00000002708)
Platyfish	MODERN SPECIES	15	ENSXMAG00000029890	NOCT (ENSXMAG00000029143)	ENSXMAG00000028580	ENSXMAG00000010874	pcdh18b (ENSXMAG00000016798)	ENSXMAG00000021274	pcdh10b (ENSXMAG00000023159)	ENSXMAG00000024893	ENSXMAG00000001331	immt (ENSXMAG00000012834)	ENSXMAG00000027084	abhd18 (ENSXMAG00000022862)	igbp1 (ENSXMAG00000014808)	enpp6 (ENSXMAG00000014794)	STOX2 (ENSXMAG00000014789)	csnk1a1 (ENSXMAG00000028098) #22	FBXO38 (ENSXMAG00000016231) #31	tmem129 (ENSXMAG00000019071)	ENSXMAG00000019079	rnf103 (ENSXMAG00000012043)	magt1 (ENSXMAG00000022759)	ENSXMAG00000012021
NAME_4	ANCESTRAL SPECIES	432													ENSGT00390000002414	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31
Mummichog	MODERN SPECIES	862																csnk1a1 (ENSFHEG00000019019) #22
Sheepshead minnow	MODERN SPECIES	902													ENSCVAG00000022755	STOX2 (ENSCVAG00000022761)	ENSCVAG00000022784	csnk1a1 (ENSCVAG00000022802) #22	FBXO38 (ENSCVAG00000022854) #31	hspa9 (ENSCVAG00000022901)	rab33ba (ENSCVAG00000022916)	zgc:113425 (ENSCVAG00000022920)	setd7 (ENSCVAG00000022946)	mgst2 (ENSCVAG00000022961)	ENSCVAG00000022994	ENSCVAG00000023101	ENSCVAG00000023124
Aplocheiloidei	DUPLICATION
Aplocheiloidei	ANCESTRAL SPECIES	158														ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700.g #22	ENSGT00920000149123.d	ENSGT00940000157090.g	ENSGT00390000004827	ENSGT00940000156526.b	ENSGT00940000159799	ENSGT00510000046732.B	ENSGT00940000160541	ENSGT00390000006550	ENSGT00510000047951	ENSGT00940000153909.b	ENSGT00940000164256	ENSGT00940000162861	ENSGT00570000079101.a.b	ENSGT00940000159403
Mangrove rivulus	MODERN SPECIES	1024															ENSKMAG00000015690	ENSKMAG00000015701 #22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000153700.h #22
Mangrove rivulus	MODERN SPECIES	813																ENSKMAG00000021336 #22
Turquoise killifish	MODERN SPECIES	1610	MAGT1 (ENSNFUG00015015216)	FBXO38 (ENSNFUG00015014992) #31	pcdh10b (ENSNFUG00015014957)	ENSNFUG00015014932	SLBP (ENSNFUG00015014927)	IMMT (ENSNFUG00015014606)	abhd18 (ENSNFUG00015014486)	igbp1 (ENSNFUG00015014461)	tmem129 (ENSNFUG00015014452)	ENSNFUG00015014436	STOX2 (ENSNFUG00015014415)	ENSNFUG00015014400	ENSNFUG00015014363	ENSNFUG00015014358	ENSNFUG00015014133	csnk1a1 (ENSNFUG00015014011) #22	HSPA9 (ENSNFUG00015013978)	RAB33B (ENSNFUG00015013969)	ENSNFUG00015013965	enpp6 (ENSNFUG00015013956)	ENSNFUG00015013950	ENSNFUG00015013948	GFRA3 (ENSNFUG00015013945)	RNF103 (ENSNFUG00015013940)	SETD7 (ENSNFUG00015013934)	zgc:154054 (ENSNFUG00015013929)	RELL2 (ENSNFUG00015013925)	TRAPPC11 (ENSNFUG00015013859)	ENSNFUG00015013838	SIL1 (ENSNFUG00015013833)	uvssa (ENSNFUG00015013823)
Ovalentaria_B	ANCESTRAL SPECIES	71													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d
Pomacentridae	ANCESTRAL SPECIES	156									ENSGT00390000017006	ENSGT00950000182818.B.a	ENSGT00940000156380	ENSGT00940000165013.b.b	ENSGT00940000174164	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d
Pomacentridae_A	ANCESTRAL SPECIES	229								ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000017006	ENSGT00950000182818.B.a	ENSGT00940000156380	ENSGT00940000174164	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31
Amphiprion	ANCESTRAL SPECIES	260								ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000017006	ENSGT00950000182818.B.a	ENSGT00940000156380	ENSGT00940000174164	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000009631	ENSGT00940000160971
Orange clownfish	MODERN SPECIES	4	zdhhc15b (ENSAPEG00000017150)	fgf16 (ENSAPEG00000017068)	atrx (ENSAPEG00000017044)	kif3a (ENSAPEG00000016982)	ENSAPEG00000016978	igbp1 (ENSAPEG00000016938)	serpine3 (ENSAPEG00000016881)	igbp1 (ENSAPEG00000016831)	magt1 (ENSAPEG00000016820)	rint1 (ENSAPEG00000016798)	prl2 (ENSAPEG00000016769)	hspa14 (ENSAPEG00000016756)	ENSAPEG00000016728	enpp6 (ENSAPEG00000016718)	STOX2 (ENSAPEG00000016675)	csnk1a1 (ENSAPEG00000016642) #22	FBXO38 (ENSAPEG00000016604) #31	cep162 (ENSAPEG00000016499)	SLITRK4 (ENSAPEG00000016469)	ENSAPEG00000016407	irf2 (ENSAPEG00000016373)	CASP3 (ENSAPEG00000016357)	acsl1b (ENSAPEG00000016272)	st3gal5 (ENSAPEG00000016265)	POLR1A (ENSAPEG00000016105)	ptcd3 (ENSAPEG00000016069)	PLS3 (ENSAPEG00000016033)	CNGA2 (ENSAPEG00000015986)	ENSAPEG00000015969	snx25 (ENSAPEG00000015944)	ENSAPEG00000015913
Clown anemonefish	MODERN SPECIES	2384															STOX2 (ENSAOCG00000010911)	csnk1a1 (ENSAOCG00000010877) #22
Spiny chromis	MODERN SPECIES	1443															ENSAPOG00000010824	csnk1a1 (ENSAPOG00000010870) #22
Bicolor damselfish	MODERN SPECIES	449								ENSSPAG00000004586	rint1 (ENSSPAG00000004559)	prl2 (ENSSPAG00000004545)	hspa14 (ENSSPAG00000004483)	b2m (ENSSPAG00000004463)	ENSSPAG00000004440	enpp6 (ENSSPAG00000004411)	STOX2 (ENSSPAG00000004396)	csnk1a1 (ENSSPAG00000004342) #22	FBXO38 (ENSSPAG00000004290) #31	magt1 (ENSSPAG00000004237)	igbp1 (ENSSPAG00000004219)	abhd18 (ENSSPAG00000004146)	rnf103 (ENSSPAG00000004122)	ENSSPAG00000004113	tmem129 (ENSSPAG00000004088)	ENSSPAG00000004046	slbp (ENSSPAG00000004021)	immt (ENSSPAG00000003946)	FGF4 (ENSSPAG00000003922)	ENSSPAG00000003916
Cichlidae	ANCESTRAL SPECIES	124													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31
Pseudocrenilabrinae	ANCESTRAL SPECIES	41	ENSGT00940000157090.g	ENSGT00510000049866.g.a.a.a	ENSGT00940000179805	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00990000205617	ENSGT00390000002932	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00990000203833	ENSGT00940000177743	ENSGT00940000154953.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00390000014635	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a	ENSGT00940000156295.h
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	48	ENSGT00940000157090.g	ENSGT00510000049866.g.a.a.a	ENSGT00940000179805	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00990000205617	ENSGT00390000002932	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00990000203833	ENSGT00940000177743	ENSGT00940000154953.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00390000014635	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a	ENSGT00940000156295.h
Haplochromini	ANCESTRAL SPECIES	25	ENSGT00390000008183	ENSGT00940000157090.g	ENSGT00510000049866.g.a.a.a	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00990000203833	ENSGT00940000177743	ENSGT00940000154953.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00390000014635	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a	ENSGT00940000156295.h
Haplochromini_A	ANCESTRAL SPECIES	28	ENSGT00940000157090.g	ENSGT00510000049866.g.a.a.a	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00390000020792.F.e	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00990000203833	ENSGT00940000177743	ENSGT00940000154953.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00390000014635	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a
P. nyererei	MODERN SPECIES	599															ENSPNYG00000005197	csnk1a1 (ENSPNYG00000005222) #22	FBXO38 (ENSPNYG00000005307) #31	igbp1 (ENSPNYG00000005323)	magt1 (ENSPNYG00000005330)	rnf103 (ENSPNYG00000005342)	abhd18 (ENSPNYG00000005368)	ENSPNYG00000005404	tmem129 (ENSPNYG00000005412)	ENSPNYG00000005441	ENSPNYG00000005451	immt (ENSPNYG00000005480)	FGF4 (ENSPNYG00000005606)	pcdh10b (ENSPNYG00000005641)
Haplochromini_B	ANCESTRAL SPECIES	68	ENSGT00390000008183	ENSGT00940000157090.g	ENSGT00510000049866.g.a.a.a	ENSGT01100000263636.c.a.a	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00390000020792.F.e	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00940000154953.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000006413	ENSGT00390000014635	ENSGT00940000161151	ENSGT00390000013284.c	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000158277.a
Eastern happy	MODERN SPECIES	11	ENSACLG00000005729	ENSACLG00000005732	ENSACLG00000005747	gfra3 (ENSACLG00000006382)	dnd1 (ENSACLG00000006388)	ENSACLG00000006400	hars (ENSACLG00000006420)	mlsl (ENSACLG00000006518)	naa15a (ENSACLG00000006578)	ENSACLG00000006642	ENSACLG00000006740	enpp6 (ENSACLG00000006744)	STOX2 (ENSACLG00000006760)	ENSACLG00000006783	ENSACLG00000006792	csnk1a1 (ENSACLG00000006794) #22	FBXO38 (ENSACLG00000006846) #31	igbp1 (ENSACLG00000006914)	magt1 (ENSACLG00000006930)	rnf103 (ENSACLG00000006946)	abhd18 (ENSACLG00000006974)	ENSACLG00000006995	tmem129 (ENSACLG00000007001)	tmem129 (ENSACLG00000007010)	ENSACLG00000007027	ENSACLG00000007036	immt (ENSACLG00000007052)	ENSACLG00000007138	pcdh10b (ENSACLG00000007281)	ENSACLG00000007573	ENSACLG00000007638
Zebra mbuna	MODERN SPECIES	1102	ENSMZEG00005017476	pcdh18b (ENSMZEG00005017468)	ENSMZEG00005017462	gfra3 (ENSMZEG00005017454)	dnd1 (ENSMZEG00005017442)	ENSMZEG00005017434	hars (ENSMZEG00005017419)	mlsl (ENSMZEG00005017393)	ENSMZEG00005017388	naa15a (ENSMZEG00005017368)	ENSMZEG00005017360	ENSMZEG00005017353	enpp6 (ENSMZEG00005017351)	STOX2 (ENSMZEG00005017346)	ENSMZEG00005017343	csnk1a1 (ENSMZEG00005017333) #22	FBXO38 (ENSMZEG00005017310) #31	igbp1 (ENSMZEG00005017300)	magt1 (ENSMZEG00005017296)	rnf103 (ENSMZEG00005017289)	abhd18 (ENSMZEG00005017279)	ENSMZEG00005017274	tmem129 (ENSMZEG00005017272)	ENSMZEG00005017266	ENSMZEG00005017261	immt (ENSMZEG00005017255)	ENSMZEG00005017250	pcdh10b (ENSMZEG00005017243)
Burton s mouthbrooder	MODERN SPECIES	702						hars (ENSHBUG00000002787)	mlsl (ENSHBUG00000002911)	ENSHBUG00000002947	naa15a (ENSHBUG00000002981)	ENSHBUG00000003016	ENSHBUG00000003026	ENSHBUG00000003038	enpp6 (ENSHBUG00000003067)	STOX2 (ENSHBUG00000003075)	ENSHBUG00000003099	csnk1a1 (ENSHBUG00000003142) #22	FBXO38 (ENSHBUG00000003179) #31	magt1 (ENSHBUG00000003200)	rnf103 (ENSHBUG00000003231)	abhd18 (ENSHBUG00000003275)	ENSHBUG00000003281	tmem129 (ENSHBUG00000003311)	ENSHBUG00000003325	ENSHBUG00000003338	immt (ENSHBUG00000003549)	ENSHBUG00000003583
Lyretail cichlid	MODERN SPECIES	396	mgst2 (ENSNBRG00000007130)	setd7 (ENSNBRG00000007120)	ENSNBRG00000007106	zgc:113425 (ENSNBRG00000007089)	rab33ba (ENSNBRG00000007077)	ENSNBRG00000007058	dnd1 (ENSNBRG00000007036)	hars (ENSNBRG00000007020)	ENSNBRG00000007012	mlsl (ENSNBRG00000006967)	NAA15 (ENSNBRG00000006656)	ENSNBRG00000006598	ENSNBRG00000006572	enpp6 (ENSNBRG00000006546)	STOX2 (ENSNBRG00000006526)	csnk1a1 (ENSNBRG00000006478) #22	FBXO38 (ENSNBRG00000006321) #31	igbp1 (ENSNBRG00000006269)	magt1 (ENSNBRG00000006224)	rnf103 (ENSNBRG00000006192)	abhd18 (ENSNBRG00000006156)	ENSNBRG00000006151	tmem129 (ENSNBRG00000006116)	ENSNBRG00000006071	ENSNBRG00000006044	ENSNBRG00000005941	ENSNBRG00000005922	pcdh10b (ENSNBRG00000005865)	pcdh18b (ENSNBRG00000005831)
Nile tilapia	MODERN SPECIES	11	SLC26A2 (ENSONIG00000004222) #18	pde6a (ENSONIG00000004214)	ENSONIG00000032092 #20	ENSONIG00000035619	ENSONIG00000037021	ENSONIG00000037440	mlsl (ENSONIG00000011547)	naa15a (ENSONIG00000011538)	ENSONIG00000043068	ENSONIG00000032090	ENSONIG00000029557	enpp6 (ENSONIG00000011534)	ENSONIG00000038886	STOX2 (ENSONIG00000011533)	ENSONIG00000029967	csnk1a1 (ENSONIG00000011528) #22	FBXO38 (ENSONIG00000011523) #31	igbp1 (ENSONIG00000011522)	magt1 (ENSONIG00000017482)	rnf103 (ENSONIG00000017479)	abhd18 (ENSONIG00000017475)	ENSONIG00000042178	ENSONIG00000042974	tmem129 (ENSONIG00000017472)	ENSONIG00000041238	ENSONIG00000017469	FGF4 (ENSONIG00000017466)	immt (ENSONIG00000017467)	ENSONIG00000043020	ENSONIG00000042709	pcdh10b (ENSONIG00000017464)
Midas cichlid	MODERN SPECIES	588														ENSACIG00000000455	ENSACIG00000000419	csnk1a1 (ENSACIG00000000384) #22	ENSACIG00000000355	FBXO38 (ENSACIG00000000294) #31
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00940000170279	ENSGT00990000203833	ENSGT00940000177743	ENSGT00440000037338	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00940000166427	ENSGT00940000156295.h	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d
Eupercaria	ANCESTRAL SPECIES	12													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427
Tetraodontidae	ANCESTRAL SPECIES	245															ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a
Fugu	MODERN SPECIES	5	gfra3 (ENSTRUG00000002545)	hvcn1 (ENSTRUG00000002961)	ENSTRUG00000003143	mlsl (ENSTRUG00000003359)	naa15a (ENSTRUG00000003946)	ENSTRUG00000022218	ENSTRUG00000022561	ENSTRUG00000032965	ENSTRUG00000027570	NOCT (ENSTRUG00000004981)	ENSTRUG00000005035	pcdh18b (ENSTRUG00000005635)	ENSTRUG00000028977	pcdh10b (ENSTRUG00000000287)	ENSTRUG00000024142	csnk1a1 (ENSTRUG00000025499) #22	FBXO38 (ENSTRUG00000000344) #31	magt1 (ENSTRUG00000024515)	dcps (ENSTRUG00000024323)	ids (ENSTRUG00000000459)	immt (ENSTRUG00000000540)	dcps (ENSTRUG00000030369)	slbp (ENSTRUG00000000688)	enpp6 (ENSTRUG00000000730)	STOX2 (ENSTRUG00000000824)	abhd18 (ENSTRUG00000000875)	igbp1 (ENSTRUG00000000967)	ENSTRUG00000025848	ENSTRUG00000024603	fam199x (ENSTRUG00000001001)	smim19 (ENSTRUG00000001039)
Tetraodon	MODERN SPECIES	12						hvcn1 (ENSTNIG00000003907)	ENSTNIG00000003908	mlsl (ENSTNIG00000003909)	NAA15 (ENSTNIG00000003910)	elf2a (ENSTNIG00000014248)	NOCT (ENSTNIG00000014249)	ENSTNIG00000003564	ENSTNIG00000019507	ENSTNIG00000002215	pcdh18b (ENSTNIG00000007176)	csnk1a1 (ENSTNIG00000004445) #22	FBXO38 (ENSTNIG00000005835) #31	magt1 (ENSTNIG00000005834)	dcps (ENSTNIG00000005833)	ids (ENSTNIG00000005832)	immt (ENSTNIG00000005831)	ENSTNIG00000000484	ENSTNIG00000005838	STOX2 (ENSTNIG00000005837)	abhd18 (ENSTNIG00000005836)	ENSTNIG00000019715	igbp1 (ENSTNIG00000019570)	atoh8 (ENSTNIG00000000721)	commd5 (ENSTNIG00000001071)	fam199x (ENSTNIG00000003703)	syvn1 (ENSTNIG00000003702)
Eupecaria_A	ANCESTRAL SPECIES	13													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427
Ballan wrasse	MODERN SPECIES	289	DRD1 (ENSLBEG00000022904)	ENSLBEG00000022922	ENSLBEG00000022942	nek12 (ENSLBEG00000022975)	pin4 (ENSLBEG00000023007)	faf2 (ENSLBEG00000023032)	rnf44 (ENSLBEG00000023079)	ENSLBEG00000023146	ENSLBEG00000023237	ENSLBEG00000023270	ENSLBEG00000023306	ENSLBEG00000023350	tmem129 (ENSLBEG00000023373)	ENSLBEG00000023395	ENSLBEG00000023406	csnk1a1 (ENSLBEG00000023431) #22	FBXO38 (ENSLBEG00000023533) #31	magt1 (ENSLBEG00000023593)	mlsl (ENSLBEG00000023648)	igbp1 (ENSLBEG00000023700)	abhd18 (ENSLBEG00000023739)	rnf103 (ENSLBEG00000023798)	ENSLBEG00000023826	naa15a (ENSLBEG00000023847)	ENSLBEG00000023914	ENSLBEG00000023933	ENSLBEG00000023973	NOCT (ENSLBEG00000024022)	hars (ENSLBEG00000024072)	dnd1 (ENSLBEG00000024151)	ENSLBEG00000024166
Eupecaria_B	ANCESTRAL SPECIES	13													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427
Perciformes	ANCESTRAL SPECIES	50	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427	ENSGT00940000155249.h	ENSGT00940000154953.a	ENSGT00440000037338	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284
Perciformes_a	ANCESTRAL SPECIES	45	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427	ENSGT00940000155249.h	ENSGT00940000154953.a	ENSGT00990000203833	ENSGT00940000175899	ENSGT00950000183174.B.a.f	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284
Channel bull blenny	MODERN SPECIES	1	pcdh10b (ENSCGOG00000006963)	pcdh18b (ENSCGOG00000006959)	ENSCGOG00000006361	NOCT (ENSCGOG00000006347)	ENSCGOG00000006346	ENSCGOG00000006345	ENSCGOG00000006340	naa15a (ENSCGOG00000004659)	immt (ENSCGOG00000004615)	slbp (ENSCGOG00000004588)	ENSCGOG00000004583	enpp6 (ENSCGOG00000004546)	ENSCGOG00000004540	STOX2 (ENSCGOG00000004537)	ENSCGOG00000004534	csnk1a1 (ENSCGOG00000003474) #22	FBXO38 (ENSCGOG00000003205) #31	magt1 (ENSCGOG00000002297)	igbp1 (ENSCGOG00000002286)	abhd18 (ENSCGOG00000002258)	rnf103 (ENSCGOG00000002250)	ENSCGOG00000002249	tmem129 (ENSCGOG00000002248)	ENSCGOG00000002245	ENSCGOG00000002244	SLITRK2 (ENSCGOG00000002239)	ENSCGOG00000002235	ENSCGOG00000002234	ENSCGOG00000002233	ENSCGOG00000002231	SLITRK4 (ENSCGOG00000002228)
Pike perch	MODERN SPECIES	77	NOCT (ENSSLUG00000015295)	ENSSLUG00000015270	ENSSLUG00000015263	ENSSLUG00000015253	ENSSLUG00000015247	naa15a (ENSSLUG00000013615)	immt (ENSSLUG00000013556)	ENSSLUG00000013545	ENSSLUG00000013519	GTPBP6 (ENSSLUG00000013491)	mibp (ENSSLUG00000013480)	ENSSLUG00000013464	enpp6 (ENSSLUG00000013421)	STOX2 (ENSSLUG00000013412)	ENSSLUG00000013408	csnk1a1 (ENSSLUG00000013372) #22	FBXO38 (ENSSLUG00000013315) #31	SLITRK2 (ENSSLUG00000013302)
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00440000037338	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00980000198976	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427	ENSGT00940000158825.d	ENSGT00390000002932	ENSGT00390000005922.b	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00390000013284	ENSGT00940000161151	ENSGT00940000161248	ENSGT00920000149123.d	ENSGT00940000157090.g	ENSGT00390000008183	ENSGT00390000004827	ENSGT00390000006550	ENSGT00510000047951	ENSGT00940000153909.b
Lumpfish	MODERN SPECIES	1	pcdh10b (ENSCLMG00005006089)	ENSCLMG00005006088	pcdh18b (ENSCLMG00005006043)	ENSCLMG00005004929	ENSCLMG00005004918	ENSCLMG00005004917	slbp (ENSCLMG00005004912)	immt (ENSCLMG00005004903)	hars (ENSCLMG00005004880)	mlsl (ENSCLMG00005004864)	FGF4 (ENSCLMG00005004861)	ENSCLMG00005004857	enpp6 (ENSCLMG00005004835)	STOX2 (ENSCLMG00005004830)	ENSCLMG00005004827	csnk1a1 (ENSCLMG00005004821) #22	ENSCLMG00005004814	FBXO38 (ENSCLMG00005004780) #31	magt1 (ENSCLMG00005004479)	igbp1 (ENSCLMG00005004393)	abhd18 (ENSCLMG00005004327)	rnf103 (ENSCLMG00005004292)	ENSCLMG00005004279	tmem129 (ENSCLMG00005004264)	ENSCLMG00005004260	SLITRK2 (ENSCLMG00005005910)	hspa9 (ENSCLMG00005005549)	rab33ba (ENSCLMG00005005543)	zgc:113425 (ENSCLMG00005005542)	setd7 (ENSCLMG00005005540)	ENSCLMG00005005539
Stickleback	MODERN SPECIES	3	ENSGACG00000019614	ENSGACG00000019612	pcdh18b (ENSGACG00000019611)	ENSGACG00000019610	ENSGACG00000019609	FGF4 (ENSGACG00000019608)	mlsl (ENSGACG00000019604)	hars (ENSGACG00000019602)	immt (ENSGACG00000019599)	slbp (ENSGACG00000019596)	ENSGACG00000019594	ENSGACG00000019592	enpp6 (ENSGACG00000019588)	STOX2 (ENSGACG00000019586)	ENSGACG00000019585	csnk1a1 (ENSGACG00000019578) #22	FBXO38 (ENSGACG00000019572) #31	magt1 (ENSGACG00000019568)	igbp1 (ENSGACG00000019563)	abhd18 (ENSGACG00000019560)	rnf103 (ENSGACG00000019558)	tmem129 (ENSGACG00000019555)	atoh8 (ENSGACG00000019554)	SLITRK2 (ENSGACG00000019553)	hspa9 (ENSGACG00000019542)	rab33ba (ENSGACG00000019540)	zgc:113425 (ENSGACG00000019538)	setd7 (ENSGACG00000019534)	stk38l (ENSGACG00000019532)	med21 (ENSGACG00000019530)	fgfr1op2 (ENSGACG00000019527)
Eupecaria_C	ANCESTRAL SPECIES	45													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158277.a	ENSGT00980000198976	ENSGT00940000156295.h	ENSGT00940000166427
Gilthead seabream	MODERN SPECIES	9	FGF4 (ENSSAUG00010012139)	ENSSAUG00010012138	ENSSAUG00010012136	tmem129 (ENSSAUG00010012134)	ENSSAUG00010012131	ENSSAUG00010012129	rnf103 (ENSSAUG00010012125)	abhd18 (ENSSAUG00010012123)	ENSSAUG00010012121	ENSSAUG00010012120	smtla (ENSSAUG00010012050)	igbp1 (ENSSAUG00010012047)	magt1 (ENSSAUG00010011903)	ENSSAUG00010011898	FBXO38 (ENSSAUG00010011844) #31	csnk1a1 (ENSSAUG00010011837) #22	ENSSAUG00010011833	STOX2 (ENSSAUG00010011832)	enpp6 (ENSSAUG00010011824)	ENSSAUG00010011818	hspa9 (ENSSAUG00010009803)	rab33ba (ENSSAUG00010009761)	zgc:113425 (ENSSAUG00010009760)	setd7 (ENSSAUG00010009757)	mgst2 (ENSSAUG00010009755)	SCOC (ENSSAUG00010009753)	zgc:154054 (ENSSAUG00010009749)	ENSSAUG00010009745	ENSSAUG00010009740	ENSSAUG00010009739	trappc11 (ENSSAUG00010009736)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	51													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00940000158825.d	ENSGT00390000002313	ENSGT00390000008738	ENSGT00390000009871	ENSGT00940000158277.a	ENSGT00940000156295.h	ENSGT00940000166427	ENSGT00940000155249.h
European seabass	MODERN SPECIES	12	ENSDLAG00005007414	ENSDLAG00005007257	ENSDLAG00005007247	ENSDLAG00005028119	ENSDLAG00005012890	ENSDLAG00005032824	ENSDLAG00005008799	ENSDLAG00005032696	ENSDLAG00005026937	ENSDLAG00005032393	ENSDLAG00005033938	ENSDLAG00005032113	ENSDLAG00005033094	ENSDLAG00005020125	ENSDLAG00005020297 #31	ENSDLAG00005020136 #22	ENSDLAG00005020573	ENSDLAG00005029521	ENSDLAG00005004589	ENSDLAG00005004592	ENSDLAG00005029518	ENSDLAG00005026327	ENSDLAG00005004638	ENSDLAG00005004688	ENSDLAG00005004703	ENSDLAG00005005148	ENSDLAG00005005175	ENSDLAG00005029593	ENSDLAG00005005298	ENSDLAG00005033967	ENSDLAG00005028368
Large yellow croaker	MODERN SPECIES		ENSLCRG00005008564	ENSLCRG00005008565	mif (ENSLCRG00005008567)	PPP2R2C (ENSLCRG00005008583)	WFS1 (ENSLCRG00005009565)	JAKMIP1 (ENSLCRG00005009590)	ENSLCRG00005010301	TLX3 (ENSLCRG00005010305)	hrh2a (ENSLCRG00005010306)	igbp1 (ENSLCRG00005010307)	ENSLCRG00005010308	magt1 (ENSLCRG00005010323)	enpp6 (ENSLCRG00005011288)	STOX2 (ENSLCRG00005011292)	ENSLCRG00005011294	csnk1a1 (ENSLCRG00005011296) #22	FBXO38 (ENSLCRG00005011303) #31	ENSLCRG00005011326	FGF4 (ENSLCRG00005011327)	immt (ENSLCRG00005011332)	ENSLCRG00005011337	ENSLCRG00005011344	ENSLCRG00005011350	ENSLCRG00005011354	ENSLCRG00005011356	ENSLCRG00005011358	ENSLCRG00005011360	ENSLCRG00005011363	ENSLCRG00005011369	pcdh10b (ENSLCRG00005000069)	ENSLCRG00005000075
Percomorphaceae_D	ANCESTRAL SPECIES	25													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000157090.g	ENSGT00390000008183	ENSGT00390000004827	ENSGT00390000008828.fb.a
Anabantaria	ANCESTRAL SPECIES	37																ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000157090.g	ENSGT00390000008183	ENSGT00390000004827	ENSGT00390000008828.fb.a
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00390000010980	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000002932	ENSGT00950000183174.B.a.f	ENSGT00940000175899	ENSGT00990000203833	ENSGT00940000154953.a	ENSGT00940000155249.h	ENSGT00940000166427	ENSGT00940000156295.h	ENSGT00940000158277.a	ENSGT00390000012030.b.a	ENSGT00390000013163 #31	ENSGT00940000153700 #22	ENSGT00520000055589.d.a.a	ENSGT00940000158457
Climbing perch	MODERN SPECIES	1	mlsl (ENSATEG00000015725)	NAA15 (ENSATEG00000015667)	ENSATEG00000030067	ENSATEG00000015617	ENSATEG00000025513	NOCT (ENSATEG00000015612)	ENSATEG00000015518	ENSATEG00000002739	PCDH18 (ENSATEG00000015463)	pcdh10b (ENSATEG00000015437)	ENSATEG00000015393 #31	ENSATEG00000000271	ENSATEG00000015424	ENSATEG00000000255 #31	ENSATEG00000027132	ENSATEG00000000201 #22	ENSATEG00000029654	ENSATEG00000000105	ENSATEG00000000012
Siamese fighting fish	MODERN SPECIES	1	gfra3 (ENSBSLG00000010612)	ENSBSLG00000010300	hars (ENSBSLG00000010095)	mlsl (ENSBSLG00000010002)	naa15a (ENSBSLG00000009789)	ENSBSLG00000009728	ENSBSLG00000009685	elf2a (ENSBSLG00000009649)	NOCT (ENSBSLG00000009644)	ENSBSLG00000009623	ENSBSLG00000009361	pcdh18b (ENSBSLG00000009333)	pcdh10b (ENSBSLG00000009310)	magt1 (ENSBSLG00000009165)	FBXO38 (ENSBSLG00000008997) #31	csnk1a1 (ENSBSLG00000008533) #22	STOX2 (ENSBSLG00000008507)	enpp6 (ENSBSLG00000008280)	ENSBSLG00000008263	SLITRK2 (ENSBSLG00000008257)	ENSBSLG00000006446	ENSBSLG00000006417	ENSBSLG00000006323	ENSBSLG00000006304	ENSBSLG00000005860	hspa9 (ENSBSLG00000005647)	igbp1 (ENSBSLG00000005600)	abhd18 (ENSBSLG00000005503)	ENSBSLG00000005484	rnf103 (ENSBSLG00000005451)	ENSBSLG00000005438
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000001720	ENSMAMG00000001744	ENSMAMG00000026327	ENSMAMG00000001792	gfra3 (ENSMAMG00000001806)	ENSMAMG00000001857	hars (ENSMAMG00000002252)	mlsl (ENSMAMG00000002318)	naa15a (ENSMAMG00000002371)	ENSMAMG00000002435	ENSMAMG00000002448	ENSMAMG00000002474	elf2a (ENSMAMG00000002486)	ENSMAMG00000002501	ENSMAMG00000002510	ENSMAMG00000002528 #22	ENSMAMG00000002609 #31	ENSMAMG00000002657	ENSMAMG00000028617	ENSMAMG00000027418	ENSMAMG00000025421	ENSMAMG00000002716	pcdh10b (ENSMAMG00000002725)	ENSMAMG00000002847	ENSMAMG00000002886	ENSMAMG00000002946	ENSMAMG00000026830	ENSMAMG00000002999	ENSMAMG00000003052	ENSMAMG00000003022	ENSMAMG00000003061
Carangaria	ANCESTRAL SPECIES	15													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000157090.g	ENSGT00390000008183	ENSGT00390000004827	ENSGT00390000008828.fb.a
Pleuronectoidei	ANCESTRAL SPECIES	122													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00390000014635
Turbot	MODERN SPECIES	4	ACSL1 (ENSSMAG00000014521)	ENSSMAG00000014570	CASP3 (ENSSMAG00000014622)	irf2 (ENSSMAG00000014641)	ENSSMAG00000015439	ENSSMAG00000014688	ENSSMAG00000014675	ENSSMAG00000016109	ENSSMAG00000028263	ENSSMAG00000028547	ENSSMAG00000034703	ENSSMAG00000031596	ENSSMAG00000027469	ENSSMAG00000006124	ENSSMAG00000023509	ENSSMAG00000006102 #22	ENSSMAG00000005593 #31	ENSSMAG00000005520	ENSSMAG00000034279	ENSSMAG00000005483	ENSSMAG00000015366	pcdh10b (ENSSMAG00000015331)	ENSSMAG00000025573	ENSSMAG00000023668	PCDH18 (ENSSMAG00000015194)	ENSSMAG00000015148	ENSSMAG00000015121	NOCT (ENSSMAG00000026688)	ENSSMAG00000027231	ENSSMAG00000015081	ENSSMAG00000015071
Tongue sole	MODERN SPECIES	6	zgc:113425 (ENSCSEG00000020350)	setd7 (ENSCSEG00000020354)	ENSCSEG00000020358	ENSCSEG00000020368	ENSCSEG00000020369	trappc11 (ENSCSEG00000020373)	spdl1 (ENSCSEG00000020383)	SIL1 (ENSCSEG00000020392)	uvssa (ENSCSEG00000020401)	nkx1.2lb (ENSCSEG00000020405)	rnf103 (ENSCSEG00000020629)	ENSCSEG00000020631	magt1 (ENSCSEG00000020632)	tmem129 (ENSCSEG00000020634)	FBXO38 (ENSCSEG00000020635) #31	csnk1a1 (ENSCSEG00000020638) #22	ENSCSEG00000020641	STOX2 (ENSCSEG00000020642)	ENSCSEG00000020644	igbp1 (ENSCSEG00000020645)	abhd18 (ENSCSEG00000020646)	ENSCSEG00000020648	slc9a6a (ENSCSEG00000020650)	fhl1a (ENSCSEG00000020666)	ENSCSEG00000020672	ENSCSEG00000020673	ENSCSEG00000020675
Carangaria_A	ANCESTRAL SPECIES	22													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000012030.b.a	ENSGT00390000002414	ENSGT00970000197643	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00390000002313	ENSGT00940000158825.d	ENSGT00940000157090.g	ENSGT00390000008183	ENSGT00390000004827
Seriola	ANCESTRAL SPECIES	101													ENSGT00940000158457	ENSGT00520000055589.d.a.a	ENSGT01030000234957	ENSGT00940000153700 #22	ENSGT00390000013163 #31	ENSGT00390000002414	ENSGT00390000012030.b.a	ENSGT00390000014635	ENSGT00390000006413	ENSGT00940000161151	ENSGT00390000013284	ENSGT00390000009871	ENSGT00390000008738	ENSGT00940000155249.h	ENSGT00940000154953.a	ENSGT00940000170279	ENSGT00940000175899	ENSGT00950000183174.B.a.f	ENSGT00390000002932
Yellowtail amberjack	MODERN SPECIES	2970											ENSSLDG00000006974	enpp6 (ENSSLDG00000006986)	STOX2 (ENSSLDG00000007026)	ENSSLDG00000007072	ENSSLDG00000007086	csnk1a1 (ENSSLDG00000007114) #22	FBXO38 (ENSSLDG00000007253) #31	igbp1 (ENSSLDG00000007301)	magt1 (ENSSLDG00000007327)	abhd18 (ENSSLDG00000007391)	rnf103 (ENSSLDG00000007423)	ENSSLDG00000007452	tmem129 (ENSSLDG00000007481)	ENSSLDG00000007530	ENSSLDG00000007554	NOCT (ENSSLDG00000007584)	elf2a (ENSSLDG00000007600)	ENSSLDG00000007624	ENSSLDG00000007649	naa15a (ENSSLDG00000007695)	mlsl (ENSSLDG00000007766)
Greater amberjack	MODERN SPECIES	91						ENSSDUG00000000285	ENSSDUG00000000316	ENSSDUG00000000330	ENSSDUG00000000349	ENSSDUG00000000370	ENSSDUG00000000387	enpp6 (ENSSDUG00000000405)	STOX2 (ENSSDUG00000000445)	ENSSDUG00000000482	ENSSDUG00000000517	csnk1a1 (ENSSDUG00000000525) #22	FBXO38 (ENSSDUG00000000616) #31	igbp1 (ENSSDUG00000000628)	magt1 (ENSSDUG00000000634)	abhd18 (ENSSDUG00000000672)	rnf103 (ENSSDUG00000000751)	ENSSDUG00000000790	tmem129 (ENSSDUG00000000800)	ENSSDUG00000000841	ENSSDUG00000000855	ENSSDUG00000000858	NOCT (ENSSDUG00000000870)	elf2a (ENSSDUG00000000884)	ENSSDUG00000000900	ENSSDUG00000000916	naa15a (ENSSDUG00000000929)
Barramundi perch	MODERN SPECIES	274												crata (ENSLCAG00010010168)	enpp6 (ENSLCAG00010010172)	STOX2 (ENSLCAG00010010175)	ENSLCAG00010010177	csnk1a1 (ENSLCAG00010010188) #22	FBXO38 (ENSLCAG00010010200) #31	magt1 (ENSLCAG00010010206)	igbp1 (ENSLCAG00010010222)	ENSLCAG00010010224	ENSLCAG00010010227	abhd18 (ENSLCAG00010010229)	rnf103 (ENSLCAG00010010233)	ENSLCAG00010010235	tmem129 (ENSLCAG00010010237)	ENSLCAG00010010240	ENSLCAG00010010248	immt (ENSLCAG00010010253)	FGF4 (ENSLCAG00010010264)	ENSLCAG00010010268	rab33ba (ENSLCAG00010010271)
Elephant shark	MODERN SPECIES	1641										pde6a (ENSCMIG00000019459)	ENSCMIG00000019680	ENSCMIG00000019684 #20	ENSCMIG00000019685	ENSCMIG00000019686 #21	tlr22 (ENSCMIG00000019690)	csnk1a1 (ENSCMIG00000019696) #22	FBXO38 (ENSCMIG00000019727) #31	cplx2 (ENSCMIG00000019739)	thoc3 (ENSCMIG00000019741)	ENSCMIG00000019745	KIAA1191 (ENSCMIG00000019747)	ENSCMIG00000019748	nop16 (ENSCMIG00000019750)	higd2a (ENSCMIG00000019751)	CLTB (ENSCMIG00000019753)	faf2 (ENSCMIG00000019755)	ENSCMIG00000000638	ENSCMIG00000000658	ENSCMIG00000000663	ENSCMIG00000000672	ENSCMIG00000000677
Cyclostomata	ANCESTRAL SPECIES	21														ENSGT00390000003303	ENSGT01030000234625.C	ENSGT00940000153700 #22	ENSGT00940000158395	ENSGT00950000182938.b.b.b.a	ENSGT00940000159492
Lamprey	MODERN SPECIES	245										ENSPMAG00000001479	ENSPMAG00000001481	ENSPMAG00000001483	FDXR (ENSPMAG00000001491)	galca (ENSPMAG00000001496)	SLC49A3 (ENSPMAG00000001514)	csnk1a1 (ENSPMAG00000001522) #22	PCGF3 (ENSPMAG00000001526)
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1394	lgmn (ENSEBUG00000014957)	ENSEBUG00000002490	ENSEBUG00000013596	ENSEBUG00000006975	ENSEBUG00000016274	ENSEBUG00000003120	ENSEBUG00000013740 #21	ENSEBUG00000008967	ENSEBUG00000005086	ENSEBUG00000015752	ENSEBUG00000013295	ENSEBUG00000008980	galca (ENSEBUG00000002235)	ENSEBUG00000005557	ENSEBUG00000002255	csnk1a1 (ENSEBUG00000013113) #22	PCGF3 (ENSEBUG00000001005)	cplx2l (ENSEBUG00000002984)	ENSEBUG00000016181	pcgf5a (ENSEBUG00000011114)	ENSEBUG00000013176	ENSEBUG00000005761	ENSEBUG00000011168	ENSEBUG00000007524	ENSEBUG00000003207	SNRPF (ENSEBUG00000001793)
Hagfish	MODERN SPECIES	1067	ENSEBUG00000009952	ENSEBUG00000004771	ENSEBUG00000003113	ENSEBUG00000010087 #29	ENSEBUG00000010774	ENSEBUG00000011920	ENSEBUG00000002989	ENSEBUG00000008481	ENSEBUG00000015282	ENSEBUG00000005791	nefmb (ENSEBUG00000002753)	ENSEBUG00000009702	mmp21 (ENSEBUG00000015063)	ENSEBUG00000001250	ENSEBUG00000015755	ENSEBUG00000015500 #22	smc3 (ENSEBUG00000015527)	dhx15 (ENSEBUG00000004428)
Ciona	DUPLICATION
Ciona	ANCESTRAL SPECIES	1053																ENSGT00940000153700.a #22	ENSGT00940000158116
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000006469	ENSCING00000006465	ENSCING00000006462	ENSCING00000013229	ENSCING00000006474	ENSCING00000006473	ENSCING00000006519	ENSCING00000006517	ENSCING00000020501	ENSCING00000021199	ENSCING00000018814	ENSCING00000022331	ENSCING00000024612	ENSCING00000006509	ENSCING00000006506	ENSCING00000006500 #22	ENSCING00000024045	ENSCING00000023435	ENSCING00000024265	ENSCING00000006483	ENSCING00000020596	ENSCING00000006476	ENSCING00000013228	ENSCING00000006522	ENSCING00000013227	ENSCING00000016789	ENSCING00000013223	ENSCING00000018061	ENSCING00000007373	ENSCING00000013224	ENSCING00000013225
Ciona savignyi	MODERN SPECIES	289																ENSCSAVG00000000917 #22	ENSCSAVG00000000952	ENSCSAVG00000000981	ENSCSAVG00000000985	ENSCSAVG00000000999	ENSCSAVG00000001001	ENSCSAVG00000001005	ENSCSAVG00000001007	ENSCSAVG00000001009	ENSCSAVG00000001011	ENSCSAVG00000001014	ENSCSAVG00000001016	ENSCSAVG00000001020	ENSCSAVG00000001031	ENSCSAVG00000001066	ENSCSAVG00000001068
Ciona	ANCESTRAL SPECIES	593														ENSGT00390000016233	ENSGT00530000067603	ENSGT00940000153700.b #22
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000013327	ENSCING00000013330	ENSCING00000010010	ENSCING00000013329	ENSCING00000013328	ENSCING00000022047	ENSCING00000022445	ENSCING00000016348	ENSCING00000020657	zf(c2h2)-38 (ENSCING00000007956)	ENSCING00000007957	ENSCING00000021016	ar20 (ENSCING00000020390)	ENSCING00000007991	ENSCING00000010008	ENSCING00000007992 #22	ENSCING00000018600	ENSCING00000016877	ENSCING00000008004	ENSCING00000018616	ENSCING00000019973	ENSCING00000007952	ENSCING00000013335	ENSCING00000007949	ENSCING00000013337	ENSCING00000020930	ENSCING00000019500	ENSCING00000007948	ENSCING00000007943	ENSCING00000007944	ENSCING00000013338
Ciona savignyi	MODERN SPECIES	289	ENSCSAVG00000001218	ENSCSAVG00000001223	ENSCSAVG00000001227	ENSCSAVG00000001268	ENSCSAVG00000001269	ENSCSAVG00000001283	ENSCSAVG00000001328	ENSCSAVG00000001329	ENSCSAVG00000001331	ENSCSAVG00000001409	ENSCSAVG00000001619	ENSCSAVG00000001620	ENSCSAVG00000001623	ENSCSAVG00000001625	ENSCSAVG00000001627	ENSCSAVG00000001628 #22	ENSCSAVG00000001629	ENSCSAVG00000001630	ENSCSAVG00000001647	ENSCSAVG00000001650	ENSCSAVG00000001652	ENSCSAVG00000001665	ENSCSAVG00000001668	ENSCSAVG00000001672	ENSCSAVG00000001675	ENSCSAVG00000001680	ENSCSAVG00000001687 ##21	ENSCSAVG00000001692	ENSCSAVG00000001694 ##21	ENSCSAVG00000001698	ENSCSAVG00000001702
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153700 #22
Fruitfly	DUPLICATION
Fruitfly	DUPLICATION
Fruitfly	DUPLICATION
Fruitfly	MODERN SPECIES	16	CG5693 (FBgn0040989)	Prosbeta5R2 (FBgn0051742)	CG5681 (FBgn0032658)	CG5674 (FBgn0032656)	btv (FBgn0023096)	CG43271 (FBgn0262960)	CG42830 (FBgn0262017)	CadN2 (FBgn0262018)	CG43231 (FBgn0262876)	CadN (FBgn0015609)	CG43054 (FBgn0262356)	CG15147 (FBgn0032654)	Sytalpha (FBgn0261089)	CG6870 (FBgn0032652)	Oli (FBgn0032651)	CG7094 (FBgn0032650) #22	CG15145 (FBgn0032649)	CG15144 (FBgn0032648)	CG15143 (FBgn0032647)	Dhc36C (FBgn0013810)	mEFTs (FBgn0032646)	CG15142 (FBgn0032645)	qua (FBgn0003187)	CG43220 (FBgn0262856)	CG43645 (FBgn0263654)	CG43221 (FBgn0262857)	CG5131 (FBgn0032644)	GCS2beta (FBgn0032643)	Lamtor3 (FBgn0032642)	fws (FBgn0024689)	cass (FBgn0286781)
Fruitfly	MODERN SPECIES	19	CG2519 (FBgn0037336)	CG43845 (FBgn0264427)	Itpr (FBgn0010051)	Nmdar1 (FBgn0010399)	NKCC (FBgn0051547)	CG31550 (FBgn0051550)	ksr (FBgn0015402)	Hcs (FBgn0037332)	CG45100 (FBgn0266539)	HDAC3 (FBgn0025825)	Snr1 (FBgn0011715)	mRpL44 (FBgn0037330)	POLDIP2 (FBgn0037329)	RpL35A (FBgn0037328)	PEK (FBgn0037327)	CG12147 (FBgn0037325) #22	CG14669 (FBgn0037326)	Orco (FBgn0037324)	CG2663 (FBgn0037323)	Or83a (FBgn0037322)	CG1172 (FBgn0264712)	CG14668 (FBgn0037320)	kkv (FBgn0001311)	7B2 (FBgn0041707)	CG14667 (FBgn0037317)	hd (FBgn0086695)	Polr2F (FBgn0003275)	CG34277 (FBgn0085306)	CG31542 (FBgn0051542)	Cerk (FBgn0037315)	Prosbeta7 (FBgn0250746)
Fruitfly	MODERN SPECIES	26	Tango4 (FBgn0030365)	Usp7 (FBgn0030366)	Cyp311a1 (FBgn0030367)	Cyp318a1 (FBgn0030369)	Ten-a (FBgn0267001)	Uch-L5R (FBgn0030370)	Muc11A (FBgn0052656)	CG34323 (FBgn0085352)	moon (FBgn0030373)	CG15734 (FBgn0030374)	CG11356 (FBgn0030375)	CG2750 (FBgn0030376)	CG1924 (FBgn0030377)	CG32655 (FBgn0052655)	CG45603 (FBgn0267163)	CG2577 (FBgn0030384) #22	Ir11a (FBgn0030385)	CG32651 (FBgn0052651)	CG2574 (FBgn0030386)	Pkcdelta (FBgn0287828)	CG15927 (FBgn0030389)	CG15731 (FBgn0030390)	Rab40 (FBgn0030391)	CG42258 (FBgn0259143)	Cpr11A (FBgn0030394)	Lsp1alpha (FBgn0002562)	Mks1 (FBgn0030395)	CG2556 (FBgn0030396)	hwt (FBgn0264542)	Cpr11B (FBgn0030398)	Pits (FBgn0030400)
Fruitfly	MODERN SPECIES	26	Mks1 (FBgn0030395)	CG2556 (FBgn0030396)	hwt (FBgn0264542)	Cpr11B (FBgn0030398)	Pits (FBgn0030400)	LIMK1 (FBgn0283712)	CG1824 (FBgn0030403)	Sec16 (FBgn0052654)	CG1463 (FBgn0030406)	Fpgs (FBgn0030407)	CG11085 (FBgn0030408)	CG15728 (FBgn0030409)	Aven (FBgn0030410)	CG2540 (FBgn0030411)	Tomosyn (FBgn0030412)	CkIalpha (FBgn0015024) #22	Tis11 (FBgn0011837)	Smr (FBgn0265523)	CG15725 (FBgn0030417)	CG4004 (FBgn0030418)	Paics (FBgn0020513)	pira (FBgn0030420)	Agpat1 (FBgn0030421)	CG32647 (FBgn0052647)	Pde9 (FBgn0259171)	Nep6 (FBgn0030425)	CG4661 (FBgn0030429)	CG32650 (FBgn0052650)	Coq8 (FBgn0052649)	CG4407 (FBgn0030431)	CG4404 (FBgn0030432)
Caenorhabditis elegans	MODERN SPECIES	2	rnf-121 (WBGene00007626)	ccdc-55 (WBGene00007627)	rnf-5 (WBGene00004381)	C16C10.8 (WBGene00007628)	C01G12.16 (WBGene00219299)	C16C10.9 (WBGene00007629)	glod-4 (WBGene00006448)	har-1 (WBGene00007630)	wht-3 (WBGene00007631)	unc-103 (WBGene00006830)	rei-1 (WBGene00007270)	C03C10.7 (WBGene00007273)	rnr-2 (WBGene00004392)	C03C10.2 (WBGene00007269)	C03C10.5 (WBGene00007271)	kin-19 (WBGene00002202) #22	unc-79 (WBGene00006811)	his-70 (WBGene00001944)	his-69 (WBGene00001943)	rcq-5 (WBGene00004322)	hum-5 (WBGene00002038)	T02C12.5 (WBGene00194692)	tftc-5 (WBGene00011368)	snpc-3.4 (WBGene00011367)	tbb-2 (WBGene00006537)	C36E8.4 (WBGene00007983)	pxd-1 (WBGene00007982)	C36E8.1 (WBGene00007980)	glb-11 (WBGene00007981)	C36E8.6 (WBGene00044230)	Y1A5A.1 (WBGene00012379)