Murinae	ANCESTRAL SPECIES	8	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243 #7	ENSGT00940000157417 #8	ENSGT00940000155944 #9	ENSGT00940000157159 #12	ENSGT00940000159153 #13	ENSGT00390000009546 #14	ENSGT00390000016097 #15	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b #23	ENSGT01010000222336.a.a.a.ob.a.b ##28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #24	ENSGT01050000245403.a #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #27	ENSGT01010000222336.a.a.a.ob.b #28	ENSGT00390000016904 #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36
Mus	ANCESTRAL SPECIES	10	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243 #7	ENSGT00940000157417 #8	ENSGT00940000155944 #9	ENSGT00940000157159 #12	ENSGT00940000159153 #13	ENSGT00390000009546 #14	ENSGT00390000016097 #15	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##28	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #23	ENSGT01010000222336.a.a.a.ob.a.b ##28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #24	ENSGT01050000245403.a #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #27	ENSGT01010000222336.a.a.a.ob.b #28	ENSGT00390000016904 #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000161472	ENSGT00940000158243 #7	ENSGT00940000157417 #8	ENSGT00940000155944 #9	ENSGT00940000156726.f #10	ENSGT00940000157159 #12	ENSGT00940000159153 #13	ENSGT00390000009546 #14	ENSGT00390000016097 #15	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##28	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #23	ENSGT01010000222336.a.a.a.ob.a.b ##28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #24	ENSGT01050000245403.a #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #27	ENSGT01010000222336.a.a.a.ob.b #28	ENSGT00390000016904 #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000161472	ENSGT00940000158243 #7	ENSGT00940000157417 #8	ENSGT00940000155944 #9	ENSGT00940000156726.f #10	ENSGT00940000157159 #12	ENSGT00940000159153 #13	ENSGT00390000009546 #14	ENSGT00390000016097 #15	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##28	ENSGT00390000000083.a #22	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #23	ENSGT01010000222336.a.a.a.ob.a.b ##28	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #24	ENSGT01050000245403.a #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #27	ENSGT01010000222336.a.a.a.ob.b #28	ENSGT00390000016904 #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000161472	ENSGT00940000158243 #7	ENSGT00940000157417 #8	ENSGT00940000155944 #9	ENSGT00940000156726.f #10	ENSGT00940000157159 #12	ENSGT00940000159153 #13	ENSGT00390000009546 #14	ENSGT00390000016097 #15	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d ##28	ENSGT00390000000083.a #22	ENSGT00900000143211	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #23	ENSGT01050000245403.b #25	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #24	ENSGT01050000245403.a #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #27	ENSGT01010000222336.a.a.a.ob.b #28	ENSGT00390000016904 #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36
Steppe mouse	MODERN SPECIES	3303	Map3k9 (ENSMSIG00000026137) #7	Pcnx (ENSMSIG00000026173) #8	Sipa1l1 (ENSMSIG00000000195) #9	ENSMSIG00000000341 #10	ENSMSIG00000000376 #11	Rgs6 (ENSMSIG00000000514) #12	Dpf3 (ENSMSIG00000001852) #13	Dcaf4 (ENSMSIG00000001923) #14	Zfyve1 (ENSMSIG00000001995) #15	ENSMSIG00000002025 #16	Rbm25 (ENSMSIG00000002048) #17	Psen1 (ENSMSIG00000002158) #18	Papln (ENSMSIG00000002234) #19	ENSMSIG00000002517 #20	Heatr4 (ENSMSIG00000002642) #21	Riox1 (ENSMSIG00000002696) #22	Acot1 (ENSMSIG00000002711) #23	Acot3 (ENSMSIG00000002760) #24	ENSMSIG00000002815 #25	ENSMSIG00000002825 #26	Acot5 (ENSMSIG00000002856) #27	Acot6 (ENSMSIG00000002911) #28	Dnal1 (ENSMSIG00000002943) #29	Pnma1 (ENSMSIG00000003016) #30	Mideas (ENSMSIG00000003037) #31	Ptgr2 (ENSMSIG00000003090) #32	Zfp410 (ENSMSIG00000003181) #33	ENSMSIG00000003267 #34	Coq6 (ENSMSIG00000003335) #35	Entpd5 (ENSMSIG00000003494) #36	Bbof1 (ENSMSIG00000003750) #37
spretus	MODERN SPECIES	3	Adam21 (MGP_SPRETEiJ_G0018755)	Med6 (MGP_SPRETEiJ_G0018756)	Ttc9 (MGP_SPRETEiJ_G0018757)	Map3k9 (MGP_SPRETEiJ_G0018758) #7	Pcnx (MGP_SPRETEiJ_G0018759) #8	Sipa1l1 (MGP_SPRETEiJ_G0018760) #9	MGP_SPRETEiJ_G0018761 #10	Rgs6 (MGP_SPRETEiJ_G0018762) #12	Dpf3 (MGP_SPRETEiJ_G0018763) #13	Dcaf4 (MGP_SPRETEiJ_G0018764) #14	Zfyve1 (MGP_SPRETEiJ_G0018765) #15	MGP_SPRETEiJ_G0018766 #17	Psen1 (MGP_SPRETEiJ_G0018767) #18	Papln (MGP_SPRETEiJ_G0018768) #19	Numb (MGP_SPRETEiJ_G0018769) #20	Riox1 (MGP_SPRETEiJ_G0018770) #22	MGP_SPRETEiJ_G0018771	Heatr4 (MGP_SPRETEiJ_G0018772) #21	MGP_SPRETEiJ_G0018773 ##28	MGP_SPRETEiJ_G0018774 #23	MGP_SPRETEiJ_G0018775 ##28	Acot3 (MGP_SPRETEiJ_G0018776) #24	Acot5 (MGP_SPRETEiJ_G0018777) #27	MGP_SPRETEiJ_G0018778 ##28	Dnal1 (MGP_SPRETEiJ_G0018779) #29	Pnma1 (MGP_SPRETEiJ_G0018780) #30	Mideas (MGP_SPRETEiJ_G0018781) #31	Ptgr2 (MGP_SPRETEiJ_G0018782) #32	Zfp410 (MGP_SPRETEiJ_G0018783) #33	Fam161b (MGP_SPRETEiJ_G0018784) #34	Coq6 (MGP_SPRETEiJ_G0018785) #35
Mouse	MODERN SPECIES	3	Synj2bp (ENSMUSG00000090935)	Adam21 (ENSMUSG00000008438)	Med6 (ENSMUSG00000002679)	Ttc9 (ENSMUSG00000042734)	Map3k9 (ENSMUSG00000042724) #7	Pcnx (ENSMUSG00000021140) #8	Sipa1l1 (ENSMUSG00000042700) #9	Rgs6 (ENSMUSG00000021219) #12	Dpf3 (ENSMUSG00000021221) #13	Dcaf4 (ENSMUSG00000021222) #14	Zfyve1 (ENSMUSG00000042628) #15	Rbm25 (ENSMUSG00000010608) #17	Psen1 (ENSMUSG00000019969) #18	Papln (ENSMUSG00000021223) #19	Numb (ENSMUSG00000021224) #20	Riox1 (ENSMUSG00000046791) #22	Heatr4 (ENSMUSG00000090843) #21	Acot2 (ENSMUSG00000021226) ##28	Acot1 (ENSMUSG00000072949) #23	Acot4 (ENSMUSG00000052392) ##28	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) #24	Acot5 (ENSMUSG00000042540) #27	Acot6 (ENSMUSG00000043487) #28	Dnal1 (ENSMUSG00000042523) #29	Pnma1 (ENSMUSG00000054383) #30	Mideas (ENSMUSG00000042507) #31	Ptgr2 (ENSMUSG00000072946) #32	Zfp410 (ENSMUSG00000042472) #33	Fam161b (ENSMUSG00000021234) #34	Coq6 (ENSMUSG00000021235) #35
Ryukyu mouse	MODERN SPECIES	3	Adam21 (MGP_CAROLIEiJ_G0017910)	Med6 (MGP_CAROLIEiJ_G0017911)	Ttc9 (MGP_CAROLIEiJ_G0017912)	Map3k9 (MGP_CAROLIEiJ_G0017913) #7	Pcnx (MGP_CAROLIEiJ_G0017914) #8	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #9	MGP_CAROLIEiJ_G0017916 #10	Rgs6 (MGP_CAROLIEiJ_G0017917) #12	Dpf3 (MGP_CAROLIEiJ_G0017918) #13	Dcaf4 (MGP_CAROLIEiJ_G0017919) #14	Zfyve1 (MGP_CAROLIEiJ_G0017920) #15	Rbm25 (MGP_CAROLIEiJ_G0017921) #17	Psen1 (MGP_CAROLIEiJ_G0017922) #18	Papln (MGP_CAROLIEiJ_G0017923) #19	Numb (MGP_CAROLIEiJ_G0017924) #20	Riox1 (MGP_CAROLIEiJ_G0017925) #22	MGP_CAROLIEiJ_G0017926	Heatr4 (MGP_CAROLIEiJ_G0017927) #21	Acot4 (MGP_CAROLIEiJ_G0017928) ##28	MGP_CAROLIEiJ_G0017929 #23	MGP_CAROLIEiJ_G0017930 #23	Acot3 (MGP_CAROLIEiJ_G0017931) #24	Acot5 (MGP_CAROLIEiJ_G0017932) #27	Acot6 (MGP_CAROLIEiJ_G0017933) #28	Dnal1 (MGP_CAROLIEiJ_G0017934) #29	Pnma1 (MGP_CAROLIEiJ_G0017935) #30	Mideas (MGP_CAROLIEiJ_G0017936) #31	Ptgr2 (MGP_CAROLIEiJ_G0017937) #32	Zfp410 (MGP_CAROLIEiJ_G0017938) #33	Fam161b (MGP_CAROLIEiJ_G0017939) #34	Coq6 (MGP_CAROLIEiJ_G0017940) #35
Shrew mouse	MODERN SPECIES	20	Synj2bp (MGP_PahariEiJ_G0029666)	Adam21 (MGP_PahariEiJ_G0029667)	Med6 (MGP_PahariEiJ_G0029668)	Ttc9 (MGP_PahariEiJ_G0029669)	Map3k9 (MGP_PahariEiJ_G0029670) #7	Pcnx (MGP_PahariEiJ_G0029671) #8	Sipa1l1 (MGP_PahariEiJ_G0029672) #9	Rgs6 (MGP_PahariEiJ_G0029673) #12	Dpf3 (MGP_PahariEiJ_G0029674) #13	Dcaf4 (MGP_PahariEiJ_G0029675) #14	Zfyve1 (MGP_PahariEiJ_G0029676) #15	Rbm25 (MGP_PahariEiJ_G0029677) #17	Psen1 (MGP_PahariEiJ_G0029678) #18	Papln (MGP_PahariEiJ_G0029679) #19	Numb (MGP_PahariEiJ_G0029680) #20	Riox1 (MGP_PahariEiJ_G0029681) #22	MGP_PahariEiJ_G0029682	Heatr4 (MGP_PahariEiJ_G0029683) #21	Or8b47 (MGP_PahariEiJ_G0029684)	MGP_PahariEiJ_G0029685	MGP_PahariEiJ_G0029686	MGP_PahariEiJ_G0029687 #23	MGP_PahariEiJ_G0029688 #23	Acot4 (MGP_PahariEiJ_G0029689) ##28	MGP_PahariEiJ_G0029690 ##28	Acot5 (MGP_PahariEiJ_G0029691) #27	Acot6 (MGP_PahariEiJ_G0029692) #28	Dnal1 (MGP_PahariEiJ_G0029693) #29	Pnma1 (MGP_PahariEiJ_G0029694) #30	Mideas (MGP_PahariEiJ_G0029695) #31	Ptgr2 (MGP_PahariEiJ_G0029696) #32
Rat	MODERN SPECIES	16	LOC103690152 (ENSRNOG00000047682)	Med6 (ENSRNOG00000006976)	Ttc9 (ENSRNOG00000007254)	Map3k9 (ENSRNOG00000007271) #7	Pcnx1 (ENSRNOG00000007459) #8	Sipa1l1 (ENSRNOG00000007646) #9	Rgs6 (ENSRNOG00000008082) #12	Dpf3 (ENSRNOG00000008086) #13	Dcaf4 (ENSRNOG00000008399) #14	Zfyve1 (ENSRNOG00000008614) #15	Rbm25 (ENSRNOG00000002874) #17	Psen1 (ENSRNOG00000009110) #18	Papln (ENSRNOG00000009448) #19	Numb (ENSRNOG00000009653) #20	Heatr4 (ENSRNOG00000038183) #21	Riox1 (ENSRNOG00000010126) #22	Acot2 (ENSRNOG00000010134) #23	Acot1 (ENSRNOG00000055221) #23	Acot4 (ENSRNOG00000046864) ##28	Acot3 (ENSRNOG00000027960) #24	ENSRNOG00000067599 #26	Acot5 (ENSRNOG00000032508) #27	Acot3 (ENSRNOG00000053460) #27	Acot6 (ENSRNOG00000029637) #28	Dnal1 (ENSRNOG00000042333) #29	Pnma1 (ENSRNOG00000010553) #30	Mideas (ENSRNOG00000010653) #31	Ptgr2 (ENSRNOG00000038166) #32	Zfp410 (ENSRNOG00000010985) #33	Fam161b (ENSRNOG00000011112) #34	Coq6 (ENSRNOG00000011164) #35