Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000161472 #9	ENSGT00940000158243 #10	ENSGT00940000157417 #11	ENSGT00940000155944 #12	ENSGT00940000156726.f #13	ENSGT00940000157159 #14	ENSGT00940000159153 #15	ENSGT00390000009546 #16	ENSGT00390000016097 #17	ENSGT00730000111019 #18	ENSGT00940000158751 #19	ENSGT00940000156891 #20	ENSGT00940000156005 #21	ENSGT00390000013207 #24	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #25	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #26	ENSGT01010000222336.a.a.a.ob.a.b ##30	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #29	ENSGT01010000222336.a.a.a.ob.b ##30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000161472 #9	ENSGT00940000158243 #10	ENSGT00940000157417 #11	ENSGT00940000155944 #12	ENSGT00940000156726.f #13	ENSGT00940000157159 #14	ENSGT00940000159153 #15	ENSGT00390000009546 #16	ENSGT00390000016097 #17	ENSGT00730000111019 #18	ENSGT00940000158751 #19	ENSGT00940000156891 #20	ENSGT00940000156005 #21	ENSGT00390000013207 #24	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #25	ENSGT00390000000083.a #22	ENSGT00900000143211 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #26	ENSGT01010000222336.a.a.a.ob.a.b ##30	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #29	ENSGT01010000222336.a.a.a.ob.b ##30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000161472 #9	ENSGT00940000158243 #10	ENSGT00940000157417 #11	ENSGT00940000155944 #12	ENSGT00940000156726.f #13	ENSGT00940000157159 #14	ENSGT00940000159153 #15	ENSGT00390000009546 #16	ENSGT00390000016097 #17	ENSGT00730000111019 #18	ENSGT00940000158751 #19	ENSGT00940000156891 #20	ENSGT00940000156005 #21	ENSGT00390000013207 #24	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #25	ENSGT00390000000083.a #22	ENSGT00900000143211 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #26	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b #28	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #29	ENSGT01010000222336.a.a.a.ob.b ##30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
spretus	MODERN SPECIES	3	Adam21 (MGP_SPRETEiJ_G0018755) #7	Med6 (MGP_SPRETEiJ_G0018756) #8	Ttc9 (MGP_SPRETEiJ_G0018757) #9	Map3k9 (MGP_SPRETEiJ_G0018758) #10	Pcnx (MGP_SPRETEiJ_G0018759) #11	Sipa1l1 (MGP_SPRETEiJ_G0018760) #12	MGP_SPRETEiJ_G0018761 #13	Rgs6 (MGP_SPRETEiJ_G0018762) #14	Dpf3 (MGP_SPRETEiJ_G0018763) #15	Dcaf4 (MGP_SPRETEiJ_G0018764) #16	Zfyve1 (MGP_SPRETEiJ_G0018765) #17	MGP_SPRETEiJ_G0018766 #18	Psen1 (MGP_SPRETEiJ_G0018767) #19	Papln (MGP_SPRETEiJ_G0018768) #20	Numb (MGP_SPRETEiJ_G0018769) #21	Riox1 (MGP_SPRETEiJ_G0018770) #22	MGP_SPRETEiJ_G0018771 #23	Heatr4 (MGP_SPRETEiJ_G0018772) #24	MGP_SPRETEiJ_G0018773 #25	MGP_SPRETEiJ_G0018774 #26	MGP_SPRETEiJ_G0018775 #27	Acot3 (MGP_SPRETEiJ_G0018776) #28	Acot5 (MGP_SPRETEiJ_G0018777) #29	MGP_SPRETEiJ_G0018778 #30	Dnal1 (MGP_SPRETEiJ_G0018779) #31	Pnma1 (MGP_SPRETEiJ_G0018780) #32	Mideas (MGP_SPRETEiJ_G0018781) #33	Ptgr2 (MGP_SPRETEiJ_G0018782) #34	Zfp410 (MGP_SPRETEiJ_G0018783) #35	Fam161b (MGP_SPRETEiJ_G0018784) #36	Coq6 (MGP_SPRETEiJ_G0018785) #37
Steppe mouse	MODERN SPECIES	3303	Map3k9 (ENSMSIG00000026137) #10	Pcnx (ENSMSIG00000026173) #11	Sipa1l1 (ENSMSIG00000000195) #12	ENSMSIG00000000341 #13	ENSMSIG00000000376	Rgs6 (ENSMSIG00000000514) #14	Dpf3 (ENSMSIG00000001852) #15	Dcaf4 (ENSMSIG00000001923) #16	Zfyve1 (ENSMSIG00000001995) #17	ENSMSIG00000002025	Rbm25 (ENSMSIG00000002048) #18	Psen1 (ENSMSIG00000002158) #19	Papln (ENSMSIG00000002234) #20	ENSMSIG00000002517 #21	Heatr4 (ENSMSIG00000002642) #24	Riox1 (ENSMSIG00000002696) #22	Acot1 (ENSMSIG00000002711) #26	Acot3 (ENSMSIG00000002760) #28	ENSMSIG00000002815	ENSMSIG00000002825	Acot5 (ENSMSIG00000002856) #29	Acot6 (ENSMSIG00000002911) ##30	Dnal1 (ENSMSIG00000002943) #31	Pnma1 (ENSMSIG00000003016) #32	Mideas (ENSMSIG00000003037) #33	Ptgr2 (ENSMSIG00000003090) #34	Zfp410 (ENSMSIG00000003181) #35	ENSMSIG00000003267 #36	Coq6 (ENSMSIG00000003335) #37	Entpd5 (ENSMSIG00000003494)	Bbof1 (ENSMSIG00000003750)
Mouse	MODERN SPECIES	3	Synj2bp (ENSMUSG00000090935)	Adam21 (ENSMUSG00000008438) #7	Med6 (ENSMUSG00000002679) #8	Ttc9 (ENSMUSG00000042734) #9	Map3k9 (ENSMUSG00000042724) #10	Pcnx (ENSMUSG00000021140) #11	Sipa1l1 (ENSMUSG00000042700) #12	Rgs6 (ENSMUSG00000021219) #14	Dpf3 (ENSMUSG00000021221) #15	Dcaf4 (ENSMUSG00000021222) #16	Zfyve1 (ENSMUSG00000042628) #17	Rbm25 (ENSMUSG00000010608) #18	Psen1 (ENSMUSG00000019969) #19	Papln (ENSMUSG00000021223) #20	Numb (ENSMUSG00000021224) #21	Riox1 (ENSMUSG00000046791) #22	Heatr4 (ENSMUSG00000090843) #24	Acot2 (ENSMUSG00000021226) #25	Acot1 (ENSMUSG00000072949) #26	Acot4 (ENSMUSG00000052392) ##30	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) #28	Acot5 (ENSMUSG00000042540) #29	Acot6 (ENSMUSG00000043487) ##30	Dnal1 (ENSMUSG00000042523) #31	Pnma1 (ENSMUSG00000054383) #32	Mideas (ENSMUSG00000042507) #33	Ptgr2 (ENSMUSG00000072946) #34	Zfp410 (ENSMUSG00000042472) #35	Fam161b (ENSMUSG00000021234) #36	Coq6 (ENSMUSG00000021235) #37
Ryukyu mouse	MODERN SPECIES	3	Adam21 (MGP_CAROLIEiJ_G0017910) #7	Med6 (MGP_CAROLIEiJ_G0017911) #8	Ttc9 (MGP_CAROLIEiJ_G0017912) #9	Map3k9 (MGP_CAROLIEiJ_G0017913) #10	Pcnx (MGP_CAROLIEiJ_G0017914) #11	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #12	MGP_CAROLIEiJ_G0017916 #13	Rgs6 (MGP_CAROLIEiJ_G0017917) #14	Dpf3 (MGP_CAROLIEiJ_G0017918) #15	Dcaf4 (MGP_CAROLIEiJ_G0017919) #16	Zfyve1 (MGP_CAROLIEiJ_G0017920) #17	Rbm25 (MGP_CAROLIEiJ_G0017921) #18	Psen1 (MGP_CAROLIEiJ_G0017922) #19	Papln (MGP_CAROLIEiJ_G0017923) #20	Numb (MGP_CAROLIEiJ_G0017924) #21	Riox1 (MGP_CAROLIEiJ_G0017925) #22	MGP_CAROLIEiJ_G0017926 #23	Heatr4 (MGP_CAROLIEiJ_G0017927) #24	Acot4 (MGP_CAROLIEiJ_G0017928) ##30	MGP_CAROLIEiJ_G0017929 #26	MGP_CAROLIEiJ_G0017930 #26	Acot3 (MGP_CAROLIEiJ_G0017931) #28	Acot5 (MGP_CAROLIEiJ_G0017932) #29	Acot6 (MGP_CAROLIEiJ_G0017933) ##30	Dnal1 (MGP_CAROLIEiJ_G0017934) #31	Pnma1 (MGP_CAROLIEiJ_G0017935) #32	Mideas (MGP_CAROLIEiJ_G0017936) #33	Ptgr2 (MGP_CAROLIEiJ_G0017937) #34	Zfp410 (MGP_CAROLIEiJ_G0017938) #35	Fam161b (MGP_CAROLIEiJ_G0017939) #36	Coq6 (MGP_CAROLIEiJ_G0017940) #37