Glires	ANCESTRAL SPECIES	12	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110	ENSGT00390000008402
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01050000245403.b	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Muroidea	ANCESTRAL SPECIES	16	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00390000016292.g.a.b
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #27	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00900000143211 #21	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #27	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Chinese hamster chok1gshd	MODERN SPECIES	2	Sipa1l1 (ENSCGRG00001001236) #7	ENSCGRG00001011338 #8	Rgs6 (ENSCGRG00001021356) #9	Dpf3 (ENSCGRG00001011525) #10	Dcaf4 (ENSCGRG00001000557) #11	Zfyve1 (ENSCGRG00001024058) #12	ENSCGRG00001023149 #13	Rbm25 (ENSCGRG00001020817) #14	Psen1 (ENSCGRG00001006926) #15	Papln (ENSCGRG00001003202) #16	ENSCGRG00001000963 #17	Numb (ENSCGRG00001016054) #18	ENSCGRG00001014450 #19	ENSCGRG00001010571 #20	ENSCGRG00001011878 #21	Riox1 (ENSCGRG00001010518) #22	Heatr4 (ENSCGRG00001008018) #23	ENSCGRG00001005504 #24	ENSCGRG00001000843 #25	Acot4 (ENSCGRG00001007771) #26	ENSCGRG00001011559 #27	ENSCGRG00001023275 #28	ENSCGRG00001020145 #29	Acot6 (ENSCGRG00001019681) #30	Dnal1 (ENSCGRG00001016988) #31	Pnma1 (ENSCGRG00001010465) #32	Mideas (ENSCGRG00001021773) #33	Ptgr2 (ENSCGRG00001015947) #34	Zfp410 (ENSCGRG00001014072) #35	Fam161b (ENSCGRG00001024553) #36	Coq6 (ENSCGRG00001024043) #37
Golden Hamster	MODERN SPECIES	652	Map3k9 (ENSMAUG00000020034)	Pcnx (ENSMAUG00000015734)	ENSMAUG00000005000 #7	ENSMAUG00000008287 #7	Rgs6 (ENSMAUG00000021028) #9	ENSMAUG00000003690	Dpf3 (ENSMAUG00000022055) #10	Dcaf4 (ENSMAUG00000016053) #11	Zfyve1 (ENSMAUG00000001400) #12	ENSMAUG00000017751 #14	ENSMAUG00000015673	Psen1 (ENSMAUG00000004090) #15	Papln (ENSMAUG00000015070) #16	Numb (ENSMAUG00000017202) #18	ENSMAUG00000021947 #21	Riox1 (ENSMAUG00000019549) #22	Heatr4 (ENSMAUG00000015300) #23	ENSMAUG00000007215 #24
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.a #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.b.b #27	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Prairie vole	MODERN SPECIES		Ttc9 (ENSMOCG00000018568)	Map3k9 (ENSMOCG00000008905)	Pcnx (ENSMOCG00000016626)	ENSMOCG00000022199	Sipa1l1 (ENSMOCG00000020326) #7	Rgs6 (ENSMOCG00000005512) #9	Dpf3 (ENSMOCG00000003784) #10	Dcaf4 (ENSMOCG00000015020) #11	Zfyve1 (ENSMOCG00000022979) #12	Rbm25 (ENSMOCG00000001935) #14	ENSMOCG00000005921	Psen1 (ENSMOCG00000009775) #15	ENSMOCG00000005015	Papln (ENSMOCG00000001461) #16	Numb (ENSMOCG00000022280) #18	Riox1 (ENSMOCG00000007570) #22	Heatr4 (ENSMOCG00000015139) #23	ENSMOCG00000005730 #24	ENSMOCG00000021013	ENSMOCG00000005600 #24	Acot4 (ENSMOCG00000013343) #26	ENSMOCG00000018416 #27	Acot5 (ENSMOCG00000000977) #28	Acot6 (ENSMOCG00000004025) #30	Dnal1 (ENSMOCG00000022267) #31	Pnma1 (ENSMOCG00000006996) #32	Mideas (ENSMOCG00000019740) #33	Ptgr2 (ENSMOCG00000010724) #34	Zfp410 (ENSMOCG00000017363) #35	Fam161b (ENSMOCG00000001828) #36	Coq6 (ENSMOCG00000006495) #37
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000001343	Adam21 (ENSPEMG00000000549)	Med6 (ENSPEMG00000000191)	Ttc9 (ENSPEMG00000028070)	Map3k9 (ENSPEMG00000018982)	Pcnx (ENSPEMG00000018423)	Sipa1l1 (ENSPEMG00000015088) #7	Rgs6 (ENSPEMG00000005178) #9	Dpf3 (ENSPEMG00000014009) #10	Dcaf4 (ENSPEMG00000009925) #11	Zfyve1 (ENSPEMG00000008691) #12	Rbm25 (ENSPEMG00000008001) #14	Psen1 (ENSPEMG00000006667) #15	Papln (ENSPEMG00000000670) #16	Numb (ENSPEMG00000018950) #18	Riox1 (ENSPEMG00000018431) #22	Heatr4 (ENSPEMG00000010857) #23	ENSPEMG00000011640 #24	ENSPEMG00000007692 #27	Acot4 (ENSPEMG00000024969) #26	ENSPEMG00000009464 #27	ENSPEMG00000007003 #28	Acot6 (ENSPEMG00000020726) #30	ENSPEMG00000027213	ENSPEMG00000030670 #31	ENSPEMG00000025553	Pnma1 (ENSPEMG00000001767) #32	Mideas (ENSPEMG00000020623) #33	Ptgr2 (ENSPEMG00000020776) #34	Zfp410 (ENSPEMG00000022416) #35	Fam161b (ENSPEMG00000021215) #36
Murinae	ANCESTRAL SPECIES	8	ENSGT00830000128402	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Mus	ANCESTRAL SPECIES	10	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #24	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000156726.f	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #24	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000156726.f	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #24	ENSGT00390000000083.a #22	ENSGT00900000143211 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
Mouse	MODERN SPECIES	3	Synj2bp (ENSMUSG00000090935)	Adam21 (ENSMUSG00000008438)	Med6 (ENSMUSG00000002679)	Ttc9 (ENSMUSG00000042734)	Map3k9 (ENSMUSG00000042724)	Pcnx (ENSMUSG00000021140)	Sipa1l1 (ENSMUSG00000042700) #7	Rgs6 (ENSMUSG00000021219) #9	Dpf3 (ENSMUSG00000021221) #10	Dcaf4 (ENSMUSG00000021222) #11	Zfyve1 (ENSMUSG00000042628) #12	Rbm25 (ENSMUSG00000010608) #14	Psen1 (ENSMUSG00000019969) #15	Papln (ENSMUSG00000021223) #16	Numb (ENSMUSG00000021224) #18	Riox1 (ENSMUSG00000046791) #22	Heatr4 (ENSMUSG00000090843) #23	Acot2 (ENSMUSG00000021226) #24	Acot1 (ENSMUSG00000072949) #24	Acot4 (ENSMUSG00000052392) #26	Gm49366 (ENSMUSG00000113475)	Acot3 (ENSMUSG00000021228) ##24	Acot5 (ENSMUSG00000042540) #28	Acot6 (ENSMUSG00000043487) #30	Dnal1 (ENSMUSG00000042523) #31	Pnma1 (ENSMUSG00000054383) #32	Mideas (ENSMUSG00000042507) #33	Ptgr2 (ENSMUSG00000072946) #34	Zfp410 (ENSMUSG00000042472) #35	Fam161b (ENSMUSG00000021234) #36	Coq6 (ENSMUSG00000021235) #37
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000156726.f	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.d #24	ENSGT00390000000083.a #22	ENSGT00900000143211 #21	ENSGT01010000222336.a.a.a.ob.a.a.c.b.c #24	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.a.c.a.b ##24	ENSGT01050000245403.a	ENSGT01010000222336.a.a.a.ob.a.a.c.a.a #28	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b
spretus	MODERN SPECIES	3	Adam21 (MGP_SPRETEiJ_G0018755)	Med6 (MGP_SPRETEiJ_G0018756)	Ttc9 (MGP_SPRETEiJ_G0018757)	Map3k9 (MGP_SPRETEiJ_G0018758)	Pcnx (MGP_SPRETEiJ_G0018759)	Sipa1l1 (MGP_SPRETEiJ_G0018760) #7	MGP_SPRETEiJ_G0018761	Rgs6 (MGP_SPRETEiJ_G0018762) #9	Dpf3 (MGP_SPRETEiJ_G0018763) #10	Dcaf4 (MGP_SPRETEiJ_G0018764) #11	Zfyve1 (MGP_SPRETEiJ_G0018765) #12	MGP_SPRETEiJ_G0018766 #14	Psen1 (MGP_SPRETEiJ_G0018767) #15	Papln (MGP_SPRETEiJ_G0018768) #16	Numb (MGP_SPRETEiJ_G0018769) #18	Riox1 (MGP_SPRETEiJ_G0018770) #22	MGP_SPRETEiJ_G0018771 #21	Heatr4 (MGP_SPRETEiJ_G0018772) #23	MGP_SPRETEiJ_G0018773 #24	MGP_SPRETEiJ_G0018774 #24	MGP_SPRETEiJ_G0018775 ##24	Acot3 (MGP_SPRETEiJ_G0018776) ##24	Acot5 (MGP_SPRETEiJ_G0018777) #28	MGP_SPRETEiJ_G0018778 ##24	Dnal1 (MGP_SPRETEiJ_G0018779) #31	Pnma1 (MGP_SPRETEiJ_G0018780) #32	Mideas (MGP_SPRETEiJ_G0018781) #33	Ptgr2 (MGP_SPRETEiJ_G0018782) #34	Zfp410 (MGP_SPRETEiJ_G0018783) #35	Fam161b (MGP_SPRETEiJ_G0018784) #36	Coq6 (MGP_SPRETEiJ_G0018785) #37
Steppe mouse	MODERN SPECIES	3303	Map3k9 (ENSMSIG00000026137)	Pcnx (ENSMSIG00000026173)	Sipa1l1 (ENSMSIG00000000195) #7	ENSMSIG00000000341	ENSMSIG00000000376	Rgs6 (ENSMSIG00000000514) #9	Dpf3 (ENSMSIG00000001852) #10	Dcaf4 (ENSMSIG00000001923) #11	Zfyve1 (ENSMSIG00000001995) #12	ENSMSIG00000002025 #19	Rbm25 (ENSMSIG00000002048) #14	Psen1 (ENSMSIG00000002158) #15	Papln (ENSMSIG00000002234) #16	ENSMSIG00000002517 #18	Heatr4 (ENSMSIG00000002642) #23	Riox1 (ENSMSIG00000002696) #22	Acot1 (ENSMSIG00000002711) #24	Acot3 (ENSMSIG00000002760) ##24	ENSMSIG00000002815	ENSMSIG00000002825	Acot5 (ENSMSIG00000002856) #28	Acot6 (ENSMSIG00000002911) #30	Dnal1 (ENSMSIG00000002943) #31	Pnma1 (ENSMSIG00000003016) #32	Mideas (ENSMSIG00000003037) #33	Ptgr2 (ENSMSIG00000003090) #34	Zfp410 (ENSMSIG00000003181) #35	ENSMSIG00000003267 #36	Coq6 (ENSMSIG00000003335) #37	Entpd5 (ENSMSIG00000003494)	Bbof1 (ENSMSIG00000003750)
Ryukyu mouse	MODERN SPECIES	3	Adam21 (MGP_CAROLIEiJ_G0017910)	Med6 (MGP_CAROLIEiJ_G0017911)	Ttc9 (MGP_CAROLIEiJ_G0017912)	Map3k9 (MGP_CAROLIEiJ_G0017913)	Pcnx (MGP_CAROLIEiJ_G0017914)	Sipa1l1 (MGP_CAROLIEiJ_G0017915) #7	MGP_CAROLIEiJ_G0017916	Rgs6 (MGP_CAROLIEiJ_G0017917) #9	Dpf3 (MGP_CAROLIEiJ_G0017918) #10	Dcaf4 (MGP_CAROLIEiJ_G0017919) #11	Zfyve1 (MGP_CAROLIEiJ_G0017920) #12	Rbm25 (MGP_CAROLIEiJ_G0017921) #14	Psen1 (MGP_CAROLIEiJ_G0017922) #15	Papln (MGP_CAROLIEiJ_G0017923) #16	Numb (MGP_CAROLIEiJ_G0017924) #18	Riox1 (MGP_CAROLIEiJ_G0017925) #22	MGP_CAROLIEiJ_G0017926 #21	Heatr4 (MGP_CAROLIEiJ_G0017927) #23	Acot4 (MGP_CAROLIEiJ_G0017928) #26	MGP_CAROLIEiJ_G0017929 #24	MGP_CAROLIEiJ_G0017930 #24	Acot3 (MGP_CAROLIEiJ_G0017931) ##24	Acot5 (MGP_CAROLIEiJ_G0017932) #28	Acot6 (MGP_CAROLIEiJ_G0017933) #30	Dnal1 (MGP_CAROLIEiJ_G0017934) #31	Pnma1 (MGP_CAROLIEiJ_G0017935) #32	Mideas (MGP_CAROLIEiJ_G0017936) #33	Ptgr2 (MGP_CAROLIEiJ_G0017937) #34	Zfp410 (MGP_CAROLIEiJ_G0017938) #35	Fam161b (MGP_CAROLIEiJ_G0017939) #36	Coq6 (MGP_CAROLIEiJ_G0017940) #37
Shrew mouse	MODERN SPECIES	20	Synj2bp (MGP_PahariEiJ_G0029666)	Adam21 (MGP_PahariEiJ_G0029667)	Med6 (MGP_PahariEiJ_G0029668)	Ttc9 (MGP_PahariEiJ_G0029669)	Map3k9 (MGP_PahariEiJ_G0029670)	Pcnx (MGP_PahariEiJ_G0029671)	Sipa1l1 (MGP_PahariEiJ_G0029672) #7	Rgs6 (MGP_PahariEiJ_G0029673) #9	Dpf3 (MGP_PahariEiJ_G0029674) #10	Dcaf4 (MGP_PahariEiJ_G0029675) #11	Zfyve1 (MGP_PahariEiJ_G0029676) #12	Rbm25 (MGP_PahariEiJ_G0029677) #14	Psen1 (MGP_PahariEiJ_G0029678) #15	Papln (MGP_PahariEiJ_G0029679) #16	Numb (MGP_PahariEiJ_G0029680) #18	Riox1 (MGP_PahariEiJ_G0029681) #22	MGP_PahariEiJ_G0029682 #21	Heatr4 (MGP_PahariEiJ_G0029683) #23	Or8b47 (MGP_PahariEiJ_G0029684)	MGP_PahariEiJ_G0029685	MGP_PahariEiJ_G0029686	MGP_PahariEiJ_G0029687 #24	MGP_PahariEiJ_G0029688 #24	Acot4 (MGP_PahariEiJ_G0029689) #26	MGP_PahariEiJ_G0029690 ##24	Acot5 (MGP_PahariEiJ_G0029691) #28	Acot6 (MGP_PahariEiJ_G0029692) #30	Dnal1 (MGP_PahariEiJ_G0029693) #31	Pnma1 (MGP_PahariEiJ_G0029694) #32	Mideas (MGP_PahariEiJ_G0029695) #33	Ptgr2 (MGP_PahariEiJ_G0029696) #34
Rat	MODERN SPECIES	16	LOC103690152 (ENSRNOG00000047682)	Med6 (ENSRNOG00000006976)	Ttc9 (ENSRNOG00000007254)	Map3k9 (ENSRNOG00000007271)	Pcnx1 (ENSRNOG00000007459)	Sipa1l1 (ENSRNOG00000007646) #7	Rgs6 (ENSRNOG00000008082) #9	Dpf3 (ENSRNOG00000008086) #10	Dcaf4 (ENSRNOG00000008399) #11	Zfyve1 (ENSRNOG00000008614) #12	Rbm25 (ENSRNOG00000002874) #14	Psen1 (ENSRNOG00000009110) #15	Papln (ENSRNOG00000009448) #16	Numb (ENSRNOG00000009653) #18	Heatr4 (ENSRNOG00000038183) #23	Riox1 (ENSRNOG00000010126) #22	Acot2 (ENSRNOG00000010134) #24	Acot1 (ENSRNOG00000055221) #24	Acot4 (ENSRNOG00000046864) #26	Acot3 (ENSRNOG00000027960) ##24	ENSRNOG00000067599	Acot5 (ENSRNOG00000032508) #28	Acot3 (ENSRNOG00000053460) #28	Acot6 (ENSRNOG00000029637) #30	Dnal1 (ENSRNOG00000042333) #31	Pnma1 (ENSRNOG00000010553) #32	Mideas (ENSRNOG00000010653) #33	Ptgr2 (ENSRNOG00000038166) #34	Zfp410 (ENSRNOG00000010985) #35	Fam161b (ENSRNOG00000011112) #36	Coq6 (ENSRNOG00000011164) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1502							Rgs6 (ENSNGAG00000015965) #9	Dpf3 (ENSNGAG00000018079) #10	Dcaf4 (ENSNGAG00000012972) #11	Zfyve1 (ENSNGAG00000009405) #12	ENSNGAG00000019959	Rbm25 (ENSNGAG00000018465) #14	Psen1 (ENSNGAG00000017181) #15	Papln (ENSNGAG00000019406) #16	ENSNGAG00000012297 #18	Riox1 (ENSNGAG00000003031) #22	ENSNGAG00000001266 #24	ENSNGAG00000001269 #24	Acot4 (ENSNGAG00000010998) #26	ENSNGAG00000016652 #28	Acot6 (ENSNGAG00000015805) #30	Dnal1 (ENSNGAG00000010152) #31	Pnma1 (ENSNGAG00000015203) #32	Mideas (ENSNGAG00000008541) #33	ENSNGAG00000000298	Ptgr2 (ENSNGAG00000016685) #34	Zfp410 (ENSNGAG00000000633) #35	Fam161b (ENSNGAG00000016812) #36	Coq6 (ENSNGAG00000015962) #37	Entpd5 (ENSNGAG00000011773)	Bbof1 (ENSNGAG00000013123)
Lesser Egyptian jerboa	MODERN SPECIES	41	Tnfrsf21 (ENSJJAG00000021218)	Cdc42bpb (ENSJJAG00000021480)	ENSJJAG00000018259	Exoc3l4 (ENSJJAG00000011125)	Tnfaip2 (ENSJJAG00000010132)	Sipa1l1 (ENSJJAG00000023961) #7	Rgs6 (ENSJJAG00000022127) #9	Dpf3 (ENSJJAG00000014377) #10	Dcaf4 (ENSJJAG00000021188) #11	ENSJJAG00000018792 #12	ENSJJAG00000024002	ENSJJAG00000022825	Psen1 (ENSJJAG00000002135) #15	Papln (ENSJJAG00000000927) #16	Numb (ENSJJAG00000019014) #18	Riox1 (ENSJJAG00000019037) #22	Heatr4 (ENSJJAG00000018627) #23	ENSJJAG00000014618 #26	ENSJJAG00000011596	Dnal1 (ENSJJAG00000017347) #31	Pnma1 (ENSJJAG00000002278) #32	Mideas (ENSJJAG00000012181) #33	Ptgr2 (ENSJJAG00000004075) #34	Zfp410 (ENSJJAG00000011182) #35	Fam161b (ENSJJAG00000010436) #36	Coq6 (ENSJJAG00000013225) #37	Entpd5 (ENSJJAG00000012303)	Bbof1 (ENSJJAG00000012977)	Aldh6a1 (ENSJJAG00000005519)	ENSJJAG00000015460	Vsx2 (ENSJJAG00000011877)
Kangaroo rat	MODERN SPECIES	321	Synj2bp (ENSDORG00000010450)	Med6 (ENSDORG00000014901)	Ttc9 (ENSDORG00000027151)	Map3k9 (ENSDORG00000011084)	Pcnx (ENSDORG00000015586)	Sipa1l1 (ENSDORG00000014657) #7	ENSDORG00000023931	Rgs6 (ENSDORG00000015367) #9	Dpf3 (ENSDORG00000007820) #10	Dcaf4 (ENSDORG00000002888) #11	Zfyve1 (ENSDORG00000015230) #12	Rbm25 (ENSDORG00000013247) #14	Psen1 (ENSDORG00000001780) #15	Papln (ENSDORG00000007325) #16	Numb (ENSDORG00000007326) #18	Riox1 (ENSDORG00000028870) #22	Heatr4 (ENSDORG00000005873) #23	ENSDORG00000013571 #24	ENSDORG00000005537 #28	ENSDORG00000013097 #28	ENSDORG00000000064 #30	Dnal1 (ENSDORG00000015187) #31	ENSDORG00000025611 ##32	Mideas (ENSDORG00000015681) #33	Ptgr2 (ENSDORG00000024075) #34	Zfp410 (ENSDORG00000009293) #35	Fam161b (ENSDORG00000009295) #36	Coq6 (ENSDORG00000009297) #37	ENSDORG00000001878	Rnf113a2 (ENSDORG00000027624)	ENSDORG00000005218
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.b #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00390000016292.g.a.b	ENSGT00940000156110
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.b #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110	ENSGT00390000008402.f
Marmotini	ANCESTRAL SPECIES	27	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.b #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #24	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000015068	ADAM21 (ENSMMMG00000015081)	ADAM20 (ENSMMMG00000015097)	MED6 (ENSMMMG00000015151)	MAP3K9 (ENSMMMG00000015173)	PCNX1 (ENSMMMG00000015257)	SIPA1L1 (ENSMMMG00000015319) #7	RGS6 (ENSMMMG00000015497) #9	DPF3 (ENSMMMG00000015579) #10	ENSMMMG00000015602 #11	ZFYVE1 (ENSMMMG00000015623) #12	RBM25 (ENSMMMG00000015650) #14	PSEN1 (ENSMMMG00000015676) #15	PAPLN (ENSMMMG00000015699) #16	NUMB (ENSMMMG00000015813) #18	RIOX1 (ENSMMMG00000015975) #22	ENSMMMG00000015982 #24	ENSMMMG00000015989 #24	ENSMMMG00000015998 #24	ENSMMMG00000016020 #30	DNAL1 (ENSMMMG00000016024) #31	PNMA1 (ENSMMMG00000016038) #32	MIDEAS (ENSMMMG00000016040) #33	PTGR2 (ENSMMMG00000016067) #34	ENSMMMG00000016079	ZNF410 (ENSMMMG00000016081) #35	FAM161B (ENSMMMG00000016102) #36	COQ6 (ENSMMMG00000016120) #37	ENTPD5 (ENSMMMG00000016134)	BBOF1 (ENSMMMG00000016213)	ALDH6A1 (ENSMMMG00000016229)
Marmotini_b	ANCESTRAL SPECIES	31	ENSGT00940000161933.jb	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.b #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b.m #24	ENSGT01010000222336.a.a.a.ob.a.a.c.b.n #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110
Squirrel	MODERN SPECIES	88	ENSSTOG00000022855	ADAM21 (ENSSTOG00000028832)	MED6 (ENSSTOG00000014084)	MAP3K9 (ENSSTOG00000014094)	PCNX1 (ENSSTOG00000013614)	ENSSTOG00000030589	SIPA1L1 (ENSSTOG00000010105) #7	RGS6 (ENSSTOG00000013412) #9	DPF3 (ENSSTOG00000011091) #10	ENSSTOG00000020210 #11	ZFYVE1 (ENSSTOG00000011109) #12	RBM25 (ENSSTOG00000011117) #14	PSEN1 (ENSSTOG00000003845) #15	PAPLN (ENSSTOG00000003857) #16	ENSSTOG00000003900 #18	RIOX1 (ENSSTOG00000024278) #22	HEATR4 (ENSSTOG00000007745) #23	ENSSTOG00000032187 #24	ENSSTOG00000003345 #24	ACOT4 (ENSSTOG00000003338) #26	ACOT6 (ENSSTOG00000003091) #30	DNAL1 (ENSSTOG00000000420) #31	ENSSTOG00000029464	PNMA1 (ENSSTOG00000000422) #32	MIDEAS (ENSSTOG00000000423) #33	PTGR2 (ENSSTOG00000008590) #34	ZNF410 (ENSSTOG00000024235) #35	FAM161B (ENSSTOG00000029202) #36	COQ6 (ENSSTOG00000016439) #37	ENTPD5 (ENSSTOG00000008069)	ENSSTOG00000008087
Arctic ground squirrel	MODERN SPECIES	8			MED6 (ENSUPAG00010016393)	TTC9 (ENSUPAG00010016377)	MAP3K9 (ENSUPAG00010016024)	PCNX1 (ENSUPAG00010015898)	SIPA1L1 (ENSUPAG00010015844) #7	RGS6 (ENSUPAG00010015605) #9	DPF3 (ENSUPAG00010015555) #10	ENSUPAG00010015527 #11	ZFYVE1 (ENSUPAG00010015501) #12	RBM25 (ENSUPAG00010015461) #14	PSEN1 (ENSUPAG00010015426) #15	PAPLN (ENSUPAG00010015337) #16	NUMB (ENSUPAG00010015200) #18	RIOX1 (ENSUPAG00010015192) #22	ENSUPAG00010015167 #23	ENSUPAG00010015131 #24	ACOT4 (ENSUPAG00010015117) #26	ACOT6 (ENSUPAG00010015106) #30	DNAL1 (ENSUPAG00010015067) #31	PNMA1 (ENSUPAG00010015061) #32	MIDEAS (ENSUPAG00010014994) #33	ENSUPAG00010014987	PTGR2 (ENSUPAG00010014963) #34	ZNF410 (ENSUPAG00010014867) #35	FAM161B (ENSUPAG00010014838) #36	COQ6 (ENSUPAG00010014809) #37	ENTPD5 (ENSUPAG00010014644)	BBOF1 (ENSUPAG00010014608)	ALDH6A1 (ENSUPAG00010014582)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005010644	TTC9 (ENSSVLG00005010601)	MAP3K9 (ENSSVLG00005010363)	PCNX1 (ENSSVLG00005009899)	ENSSVLG00005009795	SIPA1L1 (ENSSVLG00005009679) #7	ENSSVLG00005009607	RGS6 (ENSSVLG00005008662) #9	DPF3 (ENSSVLG00005008293) #10	ENSSVLG00005008049 #11	ZFYVE1 (ENSSVLG00005007958) #12	RBM25 (ENSSVLG00005007885) #14	PSEN1 (ENSSVLG00005007728) #15	PAPLN (ENSSVLG00005007348) #16	NUMB (ENSSVLG00005007168) #18	RIOX1 (ENSSVLG00005007089) #22	ENSSVLG00005007042 #23	ENSSVLG00005007000 #24	ENSSVLG00005006975	ENSSVLG00005006698 #24	ENSSVLG00005006583	ACOT4 (ENSSVLG00005006548) #26	ENSSVLG00005006522 #30	DNAL1 (ENSSVLG00005006438) #31	PNMA1 (ENSSVLG00005006415) #32	MIDEAS (ENSSVLG00005006379) #33	PTGR2 (ENSSVLG00005006327) #34	ZNF410 (ENSSVLG00005006231) #35	FAM161B (ENSSVLG00005006140) #36	COQ6 (ENSSVLG00005006026) #37	ENTPD5 (ENSSVLG00005005845)
Hystricomorpha	ANCESTRAL SPECIES	33	ENSGT00940000162712	ENSGT00940000161933	ENSGT00390000017666.p	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.a #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00390000016292.g.a.b	ENSGT00940000156110
Naked mole-rat female	MODERN SPECIES	18	ENSHGLG00000036909	RGS6 (ENSHGLG00000012031) #9	ENSHGLG00000048633	DPF3 (ENSHGLG00000006635) #10	ENSHGLG00000042994 #11	ENSHGLG00000047889	ZFYVE1 (ENSHGLG00000015923) #12	ENSHGLG00000035871	ENSHGLG00000014745 #14	PSEN1 (ENSHGLG00000044979) #15	PAPLN (ENSHGLG00000013495) #16	ENSHGLG00000017752 #18	ENSHGLG00000039431	ENSHGLG00000039363	ENSHGLG00000049066 #23	RIOX1 (ENSHGLG00000034391) #22	ENSHGLG00000047596 ##24	ENSHGLG00000048609	ACOT6 (ENSHGLG00000040633) #30	ENSHGLG00000013635	DNAL1 (ENSHGLG00000013059) #31	PNMA1 (ENSHGLG00000050390) #32	MIDEAS (ENSHGLG00000012075) #33	PTGR2 (ENSHGLG00000009670) #34	ZNF410 (ENSHGLG00000008562) #35	FAM161B (ENSHGLG00000007604) #36	COQ6 (ENSHGLG00000006532) #37	ENTPD5 (ENSHGLG00000044767)	ENSHGLG00000045022	ALDH6A1 (ENSHGLG00000008121)	LIN52 (ENSHGLG00000045214)
Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00830000128402	ENSGT00940000161933	ENSGT00390000017666.p	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.a #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT01030000234522.C.b.e.b.a.a.a #32	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00390000016292.g.a.b	ENSGT00940000156110
Guinea pig	MODERN SPECIES	20	ENSCPOG00000026757	MED6 (ENSCPOG00000012529)	TTC9 (ENSCPOG00000001801)	MAP3K9 (ENSCPOG00000001803)	PCNX1 (ENSCPOG00000001806)	ENSCPOG00000033708	SIPA1L1 (ENSCPOG00000013071) #7	RGS6 (ENSCPOG00000007309) #9	DPF3 (ENSCPOG00000007322) #10	ENSCPOG00000013878 #11	ZFYVE1 (ENSCPOG00000013880) #12	RBM25 (ENSCPOG00000002479) #14	PSEN1 (ENSCPOG00000035027) #15	PAPLN (ENSCPOG00000019279) #16	NUMB (ENSCPOG00000034984) #18	RIOX1 (ENSCPOG00000024797) #22	ENSCPOG00000038505 #24	HEATR4 (ENSCPOG00000001833) #23	ACOT4 (ENSCPOG00000036993) #26	ACOT6 (ENSCPOG00000032534) #30	DNAL1 (ENSCPOG00000010655) #31	PNMA1 (ENSCPOG00000010657) #32	MIDEAS (ENSCPOG00000010659) #33	PTGR2 (ENSCPOG00000027073) #34	ZNF410 (ENSCPOG00000009601) #35	FAM161B (ENSCPOG00000040022) #36	COQ6 (ENSCPOG00000009610) #37	ENTPD5 (ENSCPOG00000009621)	ENSCPOG00000015588	RNF113A (ENSCPOG00000038517)	ALDH6A1 (ENSCPOG00000000015)
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00390000011854	ENSGT00530000064222.b	ENSGT00940000161472	ENSGT00390000017666.p	ENSGT00940000158243	ENSGT00940000157417	ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005.a #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.c.b #24	ENSGT01010000222336.a.a.a.ob.a.b #26	ENSGT01010000222336.a.a.a.ob.b #30	ENSGT00390000016904 #31	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110	ENSGT00390000008402	ENSGT00940000157776
Long-tailed chinchilla	MODERN SPECIES	230			ENSCLAG00000006511	MAP3K9 (ENSCLAG00000006444)	PCNX1 (ENSCLAG00000006042)	SIPA1L1 (ENSCLAG00000005617) #7	RGS6 (ENSCLAG00000004860) #9	DPF3 (ENSCLAG00000004345) #10	ENSCLAG00000004165 #11	ZFYVE1 (ENSCLAG00000004097) #12	RBM25 (ENSCLAG00000003977) #14	PSEN1 (ENSCLAG00000005284) #15	PAPLN (ENSCLAG00000004775) #16	ENSCLAG00000004464 #18	ENSCLAG00000004315	RIOX1 (ENSCLAG00000004260) #22	HEATR4 (ENSCLAG00000004180) #23	ENSCLAG00000004124 #24	ACOT4 (ENSCLAG00000004063) #26	ENSCLAG00000004019 #24	ENSCLAG00000003947 #30	DNAL1 (ENSCLAG00000003917) #31	MIDEAS (ENSCLAG00000003802) #33	PTGR2 (ENSCLAG00000003701) #34	ZNF410 (ENSCLAG00000003640) #35	FAM161B (ENSCLAG00000003575) #36	COQ6 (ENSCLAG00000003521) #37	ENTPD5 (ENSCLAG00000003418)	ENSCLAG00000003357	ALDH6A1 (ENSCLAG00000003304)	LIN52 (ENSCLAG00000003236)
Degu	MODERN SPECIES	48	ENSODEG00000014741	ENSODEG00000014683	TTC9 (ENSODEG00000015092)	ENSODEG00000020259	MAP3K9 (ENSODEG00000015307)	PCNX1 (ENSODEG00000015239)	SIPA1L1 (ENSODEG00000014862) #7	RGS6 (ENSODEG00000017055) #9	DPF3 (ENSODEG00000015669) #10	ZFYVE1 (ENSODEG00000015740) #12	ENSODEG00000015250	ENSODEG00000016847	PSEN1 (ENSODEG00000016888) #15	PAPLN (ENSODEG00000016332) #16	ENSODEG00000015906 #18	RIOX1 (ENSODEG00000015583) #22	HEATR4 (ENSODEG00000015841) #23	ACOT4 (ENSODEG00000015555) #26	ENSODEG00000015224 #24	ACOT6 (ENSODEG00000015420) #30	MIDEAS (ENSODEG00000015501) #33	ENSODEG00000020268	ENSODEG00000014976 #34	ENSODEG00000015245	ENSODEG00000015333 #35	FAM161B (ENSODEG00000014840) #36	COQ6 (ENSODEG00000016014) #37	ENTPD5 (ENSODEG00000015910)	ENSODEG00000015055	ALDH6A1 (ENSODEG00000015807)	ENSODEG00000015046
Lagomorpha	ANCESTRAL SPECIES	25							ENSGT00940000155944 #7	ENSGT00940000157159 #9	ENSGT00940000159153 #10	ENSGT00390000009546 #11	ENSGT00390000016097 #12	ENSGT00730000111019 #14	ENSGT00940000158751 #15	ENSGT00940000156891 #16	ENSGT00940000156005 #18	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a #24	ENSGT00390000016904 #31	ENSGT00940000157459 #33	ENSGT00940000156793 #34	ENSGT00940000158098 #35	ENSGT00940000159998 #36	ENSGT00390000015152 #37	ENSGT01100000263540.A.b	ENSGT00940000154427.A	ENSGT00940000156110	ENSGT00390000008402	ENSGT00940000157776	ENSGT00950000182955.a.a.b	ENSGT00390000007874
Rabbit	MODERN SPECIES	12					ENSOCUG00000012114	RGS6 (ENSOCUG00000000341) #9	ENSOCUG00000031853	DPF3 (ENSOCUG00000016740) #10	ENSOCUG00000009405 #11	ZFYVE1 (ENSOCUG00000008398) #12	RBM25 (ENSOCUG00000013737) #14	PSEN1 (ENSOCUG00000014545) #15	PAPLN (ENSOCUG00000010681) #16	NUMB (ENSOCUG00000010702) #18	ENSOCUG00000031673	RIOX1 (ENSOCUG00000021858) #22	HEATR4 (ENSOCUG00000005994) #23	ENSOCUG00000030890	ENSOCUG00000022543 #26	ENSOCUG00000029229 #30	DNAL1 (ENSOCUG00000007284) #31	MIDEAS (ENSOCUG00000007290) #33	PTGR2 (ENSOCUG00000006785) #34	ZNF410 (ENSOCUG00000006787) #35	FAM161B (ENSOCUG00000006791) #36	COQ6 (ENSOCUG00000006799) #37	ENSOCUG00000006803	BBOF1 (ENSOCUG00000017487)	ALDH6A1 (ENSOCUG00000025121)	LIN52 (ENSOCUG00000017491)	VSX2 (ENSOCUG00000017496)