Pecora	ANCESTRAL SPECIES	6	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00390000009546 #15	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a ##23	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904 #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793 #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32	ENSGT00940000156110 #33
Yarkand deer	MODERN SPECIES	3	TTC9 (ENSCHYG00000016904) #7	MAP3K9 (ENSCHYG00000016964) #8	PCNX1 (ENSCHYG00000017125) #9	SIPA1L1 (ENSCHYG00000017418) #10	ENSCHYG00000017850 #11	RGS6 (ENSCHYG00000017945) #12	ENSCHYG00000019264 #13	DPF3 (ENSCHYG00000019349) #14	ENSCHYG00000019600 #15	ZFYVE1 (ENSCHYG00000019875) #16	RBM25 (ENSCHYG00000020072) #17	PSEN1 (ENSCHYG00000020221) #18	PAPLN (ENSCHYG00000020768) #19	NUMB (ENSCHYG00000021106) #20	HEATR4 (ENSCHYG00000021581) #21	RIOX1 (ENSCHYG00000021826) #22	ACOT6 (ENSCHYG00000021951) #23	DNAL1 (ENSCHYG00000022094) #24	PNMA1 (ENSCHYG00000022219) #25	MIDEAS (ENSCHYG00000022251) #26	PTGR2 (ENSCHYG00000022406) #27	ZNF410 (ENSCHYG00000022523) #28	FAM161B (ENSCHYG00000022799) #29	COQ6 (ENSCHYG00000022859) #30	ENTPD5 (ENSCHYG00000022954) #31	BBOF1 (ENSCHYG00000023091) #32	ALDH6A1 (ENSCHYG00000023203) #33	LIN52 (ENSCHYG00000023413) #34	ENSCHYG00000023471 #35	VSX2 (ENSCHYG00000023493) #36	ABCD4 (ENSCHYG00000023537) #37
Percora_a	ANCESTRAL SPECIES	8	ENSGT00940000162712	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00390000009546 #15	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a ##23	ENSGT01010000222336.a.a.a.ob.a.b.f ##23	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904 #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793 #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00390000009546 #15	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a ##23	ENSGT01010000222336.a.a.a.ob.a.b.f ##23	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904.a.a #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793 #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #14	ENSGT00390000009546 #15	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #21	ENSGT01010000222336.a.a.a.ob.a.a.q ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##23	ENSGT01010000222336.a.a.a.ob.a.a.r ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904.a.a #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793.e #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32
Bos	ANCESTRAL SPECIES	13	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #15	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207.a #21	ENSGT00390000000083.a #22	ENSGT00390000013207.b #21	ENSGT01010000222336.a.a.a.ob.a.a.q ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##23	ENSGT01010000222336.a.a.a.ob.a.a.r ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##23	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904.a.a #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793.e #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #15	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207.b #21	ENSGT01010000222336.a.a.a.ob.a.a.q ##23	ENSGT01010000222336.a.a.a.ob.a.b.e.b ##23	ENSGT01010000222336.a.a.a.ob.a.a.r ##23	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793.e #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32	ENSGT00940000165826.i
Cow	MODERN SPECIES	1	MAP3K9 (ENSBTAG00000005700) #8	PCNX1 (ENSBTAG00000012565) #9	ENSBTAG00000048690	SIPA1L1 (ENSBTAG00000015805) #10	ENSBTAG00000025385	RGS6 (ENSBTAG00000014189) #12	DPF3 (ENSBTAG00000025458) #14	ENSBTAG00000046952	DCAF4 (ENSBTAG00000008713) #15	ZFYVE1 (ENSBTAG00000011041) #16	RBM25 (ENSBTAG00000017177) #17	PSEN1 (ENSBTAG00000011757) #18	PAPLN (ENSBTAG00000011680) #19	NUMB (ENSBTAG00000011683) #20	HEATR4 (ENSBTAG00000002842) #21	RIOX1 (ENSBTAG00000025372) #22	ACOT2 (ENSBTAG00000046814) ##23	ACOT4 (ENSBTAG00000002843) ##23	ENSBTAG00000009788 ##23	ENSBTAG00000010270 ##23	DNAL1 (ENSBTAG00000015930) #23	ENSBTAG00000009783	PNMA1 (ENSBTAG00000009271) #25	MIDEAS (ENSBTAG00000009272) #26	PTGR2 (ENSBTAG00000003747) #27	ZNF410 (ENSBTAG00000020327) #28	FAM161B (ENSBTAG00000020329) #29	COQ6 (ENSBTAG00000020331) #30	ENTPD5 (ENSBTAG00000020334) #31	BBOF1 (ENSBTAG00000018467) #32	ENSBTAG00000053938
Hybrid Bos Indicus	MODERN SPECIES	1	MAP3K9 (ENSBIXG00005005038) #8	PCNX1 (ENSBIXG00005002329) #9	SIPA1L1 (ENSBIXG00005028352) #10	ENSBIXG00005028293	RGS6 (ENSBIXG00005028221) #12	DPF3 (ENSBIXG00005027707) #14	ENSBIXG00005027663	ENSBIXG00005027627 #15	ENSBIXG00005027433	ZFYVE1 (ENSBIXG00005027414) #16	RBM25 (ENSBIXG00005004710) #17	PSEN1 (ENSBIXG00005027250) #18	PAPLN (ENSBIXG00005027160) #19	NUMB (ENSBIXG00005027025) #20	HEATR4 (ENSBIXG00005004597) #21	RIOX1 (ENSBIXG00005026859) #22	ACOT4 (ENSBIXG00005026831) ##23	ACOT6 (ENSBIXG00005026754) #23	PNMA1 (ENSBIXG00005026657) #25	MIDEAS (ENSBIXG00005026640) #26	ENSBIXG00005004549 #27	ZNF410 (ENSBIXG00005026565) #28	FAM161B (ENSBIXG00005026463) #29	COQ6 (ENSBIXG00005026440) #30	ENTPD5 (ENSBIXG00005026381) #31	BBOF1 (ENSBIXG00005005787) #32	ENSBIXG00005026312	ALDH6A1 (ENSBIXG00005026295) #33	LIN52 (ENSBIXG00005026222) #34	VSX2 (ENSBIXG00005026200) #36	ABCD4 (ENSBIXG00005026163) #37
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000157417 #9	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00950000183198.c.b.b.d	ENSGT00940000159153 #14	ENSGT00950000183198.c.a.a.a.a.c.b	ENSGT00390000009546 #15	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207.a #21	ENSGT00390000000083.a #22	ENSGT00390000013207.b #21	ENSGT01010000222336.a.a.a.ob.a.a.q ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##23	ENSGT01010000222336.a.a.a.ob.a.a.r ##23	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904.a.a #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793.e #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32
Wild yak	MODERN SPECIES	605							RGS6 (ENSBMUG00000010121) #12	ENSBMUG00000009890	DPF3 (ENSBMUG00000009879) #14	ENSBMUG00000009848 #15	ZFYVE1 (ENSBMUG00000009820) #16	RBM25 (ENSBMUG00000009795) #17	PSEN1 (ENSBMUG00000009750) #18	PAPLN (ENSBMUG00000009643) #19	NUMB (ENSBMUG00000009175) #20	RIOX1 (ENSBMUG00000008961) #22	ENSBMUG00000008951 #21	ENSBMUG00000008918 ##23	ENSBMUG00000008907 ##23	ENSBMUG00000008887 ##23	ENSBMUG00000008879 ##23	ENSBMUG00000008872 #23	ENSBMUG00000008866	DNAL1 (ENSBMUG00000008848) #24	PNMA1 (ENSBMUG00000008814) #25	MIDEAS (ENSBMUG00000008801) #26	PTGR2 (ENSBMUG00000008747) #27	ZNF410 (ENSBMUG00000008634) #28	FAM161B (ENSBMUG00000008593) #29	COQ6 (ENSBMUG00000008582) #30	ENTPD5 (ENSBMUG00000008565) #31
Domestic yak	MODERN SPECIES	2	PCNX1 (ENSBGRG00000009684) #9	ENSBGRG00000010436	SIPA1L1 (ENSBGRG00000010469) #10	RGS6 (ENSBGRG00000010823) #12	DPF3 (ENSBGRG00000013900) #14	ENSBGRG00000014383	ENSBGRG00000014407 #15	ENSBGRG00000014589	ZFYVE1 (ENSBGRG00000014619) #16	RBM25 (ENSBGRG00000014814) #17	ENSBGRG00000014962	PSEN1 (ENSBGRG00000015004) #18	PAPLN (ENSBGRG00000015385) #19	NUMB (ENSBGRG00000016469) #20	ENSBGRG00000016829 #21	RIOX1 (ENSBGRG00000016972) #22	ENSBGRG00000017051 #21	ENSBGRG00000017115 ##23	ACOT6 (ENSBGRG00000017306) #23	ENSBGRG00000017382	ENSBGRG00000017419	ENSBGRG00000017483	ENSBGRG00000017562 #24	PNMA1 (ENSBGRG00000017709) #25	MIDEAS (ENSBGRG00000017732) #26	ENSBGRG00000018082 #27	ZNF410 (ENSBGRG00000018207) #28	FAM161B (ENSBGRG00000018523) #29	COQ6 (ENSBGRG00000018611) #30	ENTPD5 (ENSBGRG00000005910) #31	BBOF1 (ENSBGRG00000005994) #32
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472 #7	ENSGT00940000158243 #8	ENSGT00940000157417 #9	ENSGT00940000155944 #10	ENSGT00940000157159 #12	ENSGT00940000159153 #14	ENSGT00390000009546 #15	ENSGT00390000016097 #16	ENSGT00730000111019 #17	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #21	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a ##23	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.b ##23	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##23	ENSGT01010000222336.a.a.a.ob.b #23	ENSGT00390000016904.a.a #24	ENSGT01030000234522.C.b.e.b.a.a.a #25	ENSGT00940000157459 #26	ENSGT00940000156793 #27	ENSGT00940000158098 #28	ENSGT00940000159998 #29	ENSGT00390000015152 #30	ENSGT01100000263540.A.b #31	ENSGT00940000154427.A #32	ENSGT00940000156110 #33
Goat	MODERN SPECIES	1	TTC9 (ENSCHIG00000023182) #7	MAP3K9 (ENSCHIG00000016673) #8	PCNX1 (ENSCHIG00000026327) #9	SIPA1L1 (ENSCHIG00000020272) #10	RGS6 (ENSCHIG00000000519) #12	DPF3 (ENSCHIG00000024523) #14	ENSCHIG00000014966 #15	ZFYVE1 (ENSCHIG00000011591) #16	ENSCHIG00000021905 #17	ENSCHIG00000010764	ENSCHIG00000021190 #17	PSEN1 (ENSCHIG00000025284) #18	PAPLN (ENSCHIG00000018573) #19	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #20	RIOX1 (ENSCHIG00000024709) #22	ENSCHIG00000013624 ##23	ENSCHIG00000022908	ENSCHIG00000008334 ##23	HEATR4 (ENSCHIG00000016869) #21	ENSCHIG00000026395	ENSCHIG00000015407 ##23	ENSCHIG00000025534 #23	ENSCHIG00000012677 #24	PNMA1 (ENSCHIG00000005409) #25	MIDEAS (ENSCHIG00000025351) #26	PTGR2 (ENSCHIG00000018563) #27	ZNF410 (ENSCHIG00000002289) #28	FAM161B (ENSCHIG00000018206) #29	COQ6 (ENSCHIG00000000785) #30	ENTPD5 (ENSCHIG00000026804) #31
Rambouillet Sheep	MODERN SPECIES	23	TTC9 (ENSOARG00020004790) #7	MAP3K9 (ENSOARG00020004823) #8	PCNX1 (ENSOARG00020004951) #9	SIPA1L1 (ENSOARG00020005315) #10	RGS6 (ENSOARG00020005779) #12	ENSOARG00020009866	DPF3 (ENSOARG00020009903) #14	DCAF4 (ENSOARG00020010137) #15	ZFYVE1 (ENSOARG00020010565) #16	RBM25 (ENSOARG00020011125) #17	ENSOARG00020011255	PSEN1 (ENSOARG00020011326) #18	PAPLN (ENSOARG00020011520) #19	NUMB (ENSOARG00020011742) #20	ENSOARG00020012105 #21	RIOX1 (ENSOARG00020012228) #22	ENSOARG00020012249 ##23	ENSOARG00020012308 ##23	ENSOARG00020012357 ##23	ENSOARG00020012431 ##23	ACOT6 (ENSOARG00020012471) #23	ENSOARG00020012528	ENSOARG00020012555 #24	PNMA1 (ENSOARG00020012650) #25	MIDEAS (ENSOARG00020012681) #26	PTGR2 (ENSOARG00020012884) #27	ZNF410 (ENSOARG00020013087) #28	FAM161B (ENSOARG00020013369) #29	COQ6 (ENSOARG00020013490) #30	ENTPD5 (ENSOARG00020013612) #31	BBOF1 (ENSOARG00020013850) #32
Siberian musk deer	MODERN SPECIES	260	MED6 (ENSMMSG00000016803)	ENSMMSG00000017035	TTC9 (ENSMMSG00000017056) #7	MAP3K9 (ENSMMSG00000017089) #8	PCNX1 (ENSMMSG00000017386) #9	SIPA1L1 (ENSMMSG00000017694) #10	RGS6 (ENSMMSG00000017838) #12	DPF3 (ENSMMSG00000019667) #14	ENSMMSG00000019774 #15	ZFYVE1 (ENSMMSG00000019863) #16	RBM25 (ENSMMSG00000019940) #17	PSEN1 (ENSMMSG00000019994) #18	PAPLN (ENSMMSG00000020113) #19	NUMB (ENSMMSG00000020223) #20	ENSMMSG00000020471 #21	RIOX1 (ENSMMSG00000020569) #22	ENSMMSG00000020582 ##23	ENSMMSG00000020621 ##23	ENSMMSG00000020634	ENSMMSG00000020660 ##23	ACOT6 (ENSMMSG00000020688) #23	DNAL1 (ENSMMSG00000020722) #24	PNMA1 (ENSMMSG00000020797) #25	MIDEAS (ENSMMSG00000020815) #26	PTGR2 (ENSMMSG00000020873) #27	ZNF410 (ENSMMSG00000020927) #28	FAM161B (ENSMMSG00000020978) #29	COQ6 (ENSMMSG00000021004) #30	ENTPD5 (ENSMMSG00000021133) #31	BBOF1 (ENSMMSG00000021217) #32	ALDH6A1 (ENSMMSG00000021323) #33