Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000161933.e	ENSGT00940000162712	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417 #7	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00940000159153 #11	ENSGT00390000009546 #13	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a #24	ENSGT01010000222336.a.a.a.ob.a.b.f ##25	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT00390000016904.a.a #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37
Bovinae	ANCESTRAL SPECIES	11	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417 #7	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00950000183198.c.b.b.d ##12	ENSGT00940000159153 #11	ENSGT00390000009546 #13	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207 #23	ENSGT01010000222336.a.a.a.ob.a.a.q #24	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##25	ENSGT01010000222336.a.a.a.ob.a.a.r ##25	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT00390000016904.a.a #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793.e #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37
Bos	ANCESTRAL SPECIES	13	ENSGT00940000158243	ENSGT00940000157417 #7	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00940000159153 #11	ENSGT00950000183198.c.a.a.a.a.c.b #12	ENSGT00390000009546 #13	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b #14	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207.a #21	ENSGT00390000000083.a #22	ENSGT00390000013207.b #23	ENSGT01010000222336.a.a.a.ob.a.a.q #24	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##25	ENSGT01010000222336.a.a.a.ob.a.a.r ##25	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##25	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT00390000016904.a.a #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793.e #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000157417 #7	ENSGT00950000182878.b.a.c.a.a.b.p.b.b.b	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00950000183198.c.b.b.d ##12	ENSGT00940000159153 #11	ENSGT00950000183198.c.a.a.a.a.c.b #12	ENSGT00390000009546 #13	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b #14	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207.a #21	ENSGT00390000000083.a #22	ENSGT00390000013207.b #23	ENSGT01010000222336.a.a.a.ob.a.a.q #24	ENSGT01010000222336.a.a.a.ob.a.b.f.b ##25	ENSGT01010000222336.a.a.a.ob.a.a.r ##25	ENSGT01010000222336.a.a.a.ob.a.b.f.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT00390000016904.a.a #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793.e #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37
Domestic yak	MODERN SPECIES	2	PCNX1 (ENSBGRG00000009684) #7	ENSBGRG00000010436 #8	SIPA1L1 (ENSBGRG00000010469) #9	RGS6 (ENSBGRG00000010823) #10	DPF3 (ENSBGRG00000013900) #11	ENSBGRG00000014383 #12	ENSBGRG00000014407 #13	ENSBGRG00000014589 #14	ZFYVE1 (ENSBGRG00000014619) #15	RBM25 (ENSBGRG00000014814) #16	ENSBGRG00000014962 #17	PSEN1 (ENSBGRG00000015004) #18	PAPLN (ENSBGRG00000015385) #19	NUMB (ENSBGRG00000016469) #20	ENSBGRG00000016829 #21	RIOX1 (ENSBGRG00000016972) #22	ENSBGRG00000017051 #23	ENSBGRG00000017115 #24	ACOT6 (ENSBGRG00000017306) #25	ENSBGRG00000017382 #26	ENSBGRG00000017419 #27	ENSBGRG00000017483 #28	ENSBGRG00000017562 #29	PNMA1 (ENSBGRG00000017709) #30	MIDEAS (ENSBGRG00000017732) #31	ENSBGRG00000018082 #32	ZNF410 (ENSBGRG00000018207) #33	FAM161B (ENSBGRG00000018523) #34	COQ6 (ENSBGRG00000018611) #35	ENTPD5 (ENSBGRG00000005910) #36	BBOF1 (ENSBGRG00000005994) #37
Wild yak	MODERN SPECIES	605							RGS6 (ENSBMUG00000010121) #10	ENSBMUG00000009890 ##12	DPF3 (ENSBMUG00000009879) #11	ENSBMUG00000009848 #13	ZFYVE1 (ENSBMUG00000009820) #15	RBM25 (ENSBMUG00000009795) #16	PSEN1 (ENSBMUG00000009750) #18	PAPLN (ENSBMUG00000009643) #19	NUMB (ENSBMUG00000009175) #20	RIOX1 (ENSBMUG00000008961) #22	ENSBMUG00000008951 #21	ENSBMUG00000008918 #24	ENSBMUG00000008907 ##25	ENSBMUG00000008887 ##25	ENSBMUG00000008879 ##25	ENSBMUG00000008872 #25	ENSBMUG00000008866 ##28	DNAL1 (ENSBMUG00000008848) #29	PNMA1 (ENSBMUG00000008814) #30	MIDEAS (ENSBMUG00000008801) #31	PTGR2 (ENSBMUG00000008747) #32	ZNF410 (ENSBMUG00000008634) #33	FAM161B (ENSBMUG00000008593) #34	COQ6 (ENSBMUG00000008582) #35	ENTPD5 (ENSBMUG00000008565) #36
Bos_b	ANCESTRAL SPECIES	11	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417 #7	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00940000159153 #11	ENSGT00950000183198.c.a.a.a.a.c.b #12	ENSGT00390000009546 #13	ENSGT01100000263480.a.a.b.b.b.a.b.a.a.a.a.b.b #14	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000000083.a #22	ENSGT00390000013207.b #23	ENSGT01010000222336.a.a.a.ob.a.a.q #24	ENSGT01010000222336.a.a.a.ob.a.b.e.b ##25	ENSGT01010000222336.a.a.a.ob.a.a.r ##25	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793.e #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37	ENSGT00940000165826.i
Cow	MODERN SPECIES	1	MAP3K9 (ENSBTAG00000005700)	PCNX1 (ENSBTAG00000012565) #7	ENSBTAG00000048690	SIPA1L1 (ENSBTAG00000015805) #9	ENSBTAG00000025385	RGS6 (ENSBTAG00000014189) #10	DPF3 (ENSBTAG00000025458) #11	ENSBTAG00000046952 #12	DCAF4 (ENSBTAG00000008713) #13	ZFYVE1 (ENSBTAG00000011041) #15	RBM25 (ENSBTAG00000017177) #16	PSEN1 (ENSBTAG00000011757) #18	PAPLN (ENSBTAG00000011680) #19	NUMB (ENSBTAG00000011683) #20	HEATR4 (ENSBTAG00000002842) #23	RIOX1 (ENSBTAG00000025372) #22	ACOT2 (ENSBTAG00000046814) #24	ACOT4 (ENSBTAG00000002843) ##25	ENSBTAG00000009788 ##25	ENSBTAG00000010270 ##25	DNAL1 (ENSBTAG00000015930) #25	ENSBTAG00000009783 ##28	PNMA1 (ENSBTAG00000009271) #30	MIDEAS (ENSBTAG00000009272) #31	PTGR2 (ENSBTAG00000003747) #32	ZNF410 (ENSBTAG00000020327) #33	FAM161B (ENSBTAG00000020329) #34	COQ6 (ENSBTAG00000020331) #35	ENTPD5 (ENSBTAG00000020334) #36	BBOF1 (ENSBTAG00000018467) #37	ENSBTAG00000053938
Hybrid Bos Indicus	MODERN SPECIES	1	MAP3K9 (ENSBIXG00005005038)	PCNX1 (ENSBIXG00005002329) #7	SIPA1L1 (ENSBIXG00005028352) #9	ENSBIXG00005028293	RGS6 (ENSBIXG00005028221) #10	DPF3 (ENSBIXG00005027707) #11	ENSBIXG00005027663 #12	ENSBIXG00005027627 #13	ENSBIXG00005027433 #14	ZFYVE1 (ENSBIXG00005027414) #15	RBM25 (ENSBIXG00005004710) #16	PSEN1 (ENSBIXG00005027250) #18	PAPLN (ENSBIXG00005027160) #19	NUMB (ENSBIXG00005027025) #20	HEATR4 (ENSBIXG00005004597) #23	RIOX1 (ENSBIXG00005026859) #22	ACOT4 (ENSBIXG00005026831) ##25	ACOT6 (ENSBIXG00005026754) #25	PNMA1 (ENSBIXG00005026657) #30	MIDEAS (ENSBIXG00005026640) #31	ENSBIXG00005004549 #32	ZNF410 (ENSBIXG00005026565) #33	FAM161B (ENSBIXG00005026463) #34	COQ6 (ENSBIXG00005026440) #35	ENTPD5 (ENSBIXG00005026381) #36	BBOF1 (ENSBIXG00005005787) #37	ENSBIXG00005026312	ALDH6A1 (ENSBIXG00005026295)	LIN52 (ENSBIXG00005026222)	VSX2 (ENSBIXG00005026200)	ABCD4 (ENSBIXG00005026163)
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000161067	ENSGT00390000017666	ENSGT00940000161472	ENSGT00940000158243	ENSGT00940000157417 #7	ENSGT00940000155944 #9	ENSGT00940000157159 #10	ENSGT00940000159153 #11	ENSGT00390000009546 #13	ENSGT00390000016097 #15	ENSGT00730000111019 #16	ENSGT00940000158751 #18	ENSGT00940000156891 #19	ENSGT00940000156005 #20	ENSGT00390000013207 #23	ENSGT00390000000083.a #22	ENSGT01010000222336.a.a.a.ob.a.a #24	ENSGT01050000245403.b	ENSGT01010000222336.a.a.a.ob.a.b.e.b ##25	ENSGT01010000222336.a.a.a.ob.a.b.e.a ##25	ENSGT01010000222336.a.a.a.ob.b #25	ENSGT00390000016904.a.a #29	ENSGT01030000234522.C.b.e.b.a.a.a #30	ENSGT00940000157459 #31	ENSGT00940000156793 #32	ENSGT00940000158098 #33	ENSGT00940000159998 #34	ENSGT00390000015152 #35	ENSGT01100000263540.A.b #36	ENSGT00940000154427.A #37	ENSGT00940000156110
Goat	MODERN SPECIES	1	TTC9 (ENSCHIG00000023182)	MAP3K9 (ENSCHIG00000016673)	PCNX1 (ENSCHIG00000026327) #7	SIPA1L1 (ENSCHIG00000020272) #9	RGS6 (ENSCHIG00000000519) #10	DPF3 (ENSCHIG00000024523) #11	ENSCHIG00000014966 #13	ZFYVE1 (ENSCHIG00000011591) #15	ENSCHIG00000021905 #16	ENSCHIG00000010764	ENSCHIG00000021190 #16	PSEN1 (ENSCHIG00000025284) #18	PAPLN (ENSCHIG00000018573) #19	ENSCHIG00000023603	NUMB (ENSCHIG00000017411) #20	RIOX1 (ENSCHIG00000024709) #22	ENSCHIG00000013624 #24	ENSCHIG00000022908	ENSCHIG00000008334 ##25	HEATR4 (ENSCHIG00000016869) #23	ENSCHIG00000026395	ENSCHIG00000015407 ##25	ENSCHIG00000025534 #25	ENSCHIG00000012677 #29	PNMA1 (ENSCHIG00000005409) #30	MIDEAS (ENSCHIG00000025351) #31	PTGR2 (ENSCHIG00000018563) #32	ZNF410 (ENSCHIG00000002289) #33	FAM161B (ENSCHIG00000018206) #34	COQ6 (ENSCHIG00000000785) #35	ENTPD5 (ENSCHIG00000026804) #36
Rambouillet Sheep	MODERN SPECIES	23	TTC9 (ENSOARG00020004790)	MAP3K9 (ENSOARG00020004823)	PCNX1 (ENSOARG00020004951) #7	SIPA1L1 (ENSOARG00020005315) #9	RGS6 (ENSOARG00020005779) #10	ENSOARG00020009866	DPF3 (ENSOARG00020009903) #11	DCAF4 (ENSOARG00020010137) #13	ZFYVE1 (ENSOARG00020010565) #15	RBM25 (ENSOARG00020011125) #16	ENSOARG00020011255	PSEN1 (ENSOARG00020011326) #18	PAPLN (ENSOARG00020011520) #19	NUMB (ENSOARG00020011742) #20	ENSOARG00020012105 #23	RIOX1 (ENSOARG00020012228) #22	ENSOARG00020012249 #24	ENSOARG00020012308 ##25	ENSOARG00020012357 #24	ENSOARG00020012431 ##25	ACOT6 (ENSOARG00020012471) #25	ENSOARG00020012528	ENSOARG00020012555 ##29	PNMA1 (ENSOARG00020012650) #30	MIDEAS (ENSOARG00020012681) #31	PTGR2 (ENSOARG00020012884) #32	ZNF410 (ENSOARG00020013087) #33	FAM161B (ENSOARG00020013369) #34	COQ6 (ENSOARG00020013490) #35	ENTPD5 (ENSOARG00020013612) #36	BBOF1 (ENSOARG00020013850) #37