Bilateria	ANCESTRAL SPECIES																	ENSGT00940000153886 #22
Chordata	DUPLICATION
Chordata	DUPLICATION
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b #22
Gnathostomata	ANCESTRAL SPECIES	32	ENSGT00950000182970.A.b	ENSGT01030000234597.a.b.b.f	ENSGT00410000025596.a.a	ENSGT00940000160694	ENSGT00950000183149.B ##13	ENSGT00940000158197	ENSGT00390000006008	ENSGT00940000164879	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00490000043388.b	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473	ENSGT00390000005213
Euteleostomi	ANCESTRAL SPECIES	8	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00390000005213	ENSGT00390000003849	ENSGT00940000157709	ENSGT00390000002854
Sarcopterygii	ANCESTRAL SPECIES	3	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Mammalia	ANCESTRAL SPECIES	3	ENSGT00390000003248.a.a #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Theria	ANCESTRAL SPECIES	7	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Eutheria	ANCESTRAL SPECIES	15	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Boreoeutheria	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Euarchontoglires	DUPLICATION
Euarchontoglires	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Euarchontoglires_A	ANCESTRAL SPECIES	19	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Glires	ANCESTRAL SPECIES	20	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Rodentia	ANCESTRAL SPECIES	19	ENSGT00390000003248.a.a.a.b.db #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00390000003248.a.a.a.b.db #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00390000003248.a.a.a.b.db #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Muroidea	ANCESTRAL SPECIES	14	ENSGT00390000003248.a.a.a.b.db #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Mus	ANCESTRAL SPECIES	3	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Shrew mouse	MODERN SPECIES	14	Rps20 (MGP_PahariEiJ_G0023904) #7	Mos (MGP_PahariEiJ_G0023905) #8	Plag1 (MGP_PahariEiJ_G0023906) #9	Chchd7 (MGP_PahariEiJ_G0023907) #10	Sdr16c5 (MGP_PahariEiJ_G0023908) #11	Sdr16c6 (MGP_PahariEiJ_G0023909) #12	Penk (MGP_PahariEiJ_G0023910) #13	Bpnt2 (MGP_PahariEiJ_G0023911) #14	Fam110b (MGP_PahariEiJ_G0023912) #15	Ubxn2b (MGP_PahariEiJ_G0023913) #16	Cyp7a1 (MGP_PahariEiJ_G0023914) #17	Sdcbp (MGP_PahariEiJ_G0023915) #18	Nsmaf (MGP_PahariEiJ_G0023916) #19	Tox (MGP_PahariEiJ_G0023917) #20	Car8 (MGP_PahariEiJ_G0023918) #21	Rab2a (MGP_PahariEiJ_G0023919) #22	Chd7 (MGP_PahariEiJ_G0023920) #23	Clvs1 (MGP_PahariEiJ_G0023921) #24	Asph (MGP_PahariEiJ_G0023922) #25	Gdf6 (MGP_PahariEiJ_G0023923) #26	Cfap418 (MGP_PahariEiJ_G0023924) #27	Plekhf2 (MGP_PahariEiJ_G0023925) #28	Ndufaf6 (MGP_PahariEiJ_G0023926) #29	Trp53inp1 (MGP_PahariEiJ_G0023927) #30	Ccne2 (MGP_PahariEiJ_G0023928) #31	Ints8 (MGP_PahariEiJ_G0023929) #32	Dpy19l4 (MGP_PahariEiJ_G0023930) #33	Esrp1 (MGP_PahariEiJ_G0023931) #34	Virma (MGP_PahariEiJ_G0023932) #35	Rad54b (MGP_PahariEiJ_G0023933) #36	Fsbp (MGP_PahariEiJ_G0023934) #37
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Ryukyu mouse	MODERN SPECIES	13	Rps20 (MGP_CAROLIEiJ_G0025781) #7	Mos (MGP_CAROLIEiJ_G0025782) #8	Plag1 (MGP_CAROLIEiJ_G0025783) #9	Chchd7 (MGP_CAROLIEiJ_G0025784) #10	Sdr16c5 (MGP_CAROLIEiJ_G0025785) #11	Sdr16c6 (MGP_CAROLIEiJ_G0025786) #12	Penk (MGP_CAROLIEiJ_G0025787) #13	Bpnt2 (MGP_CAROLIEiJ_G0025788) #14	Fam110b (MGP_CAROLIEiJ_G0025789) #15	Ubxn2b (MGP_CAROLIEiJ_G0025790) #16	Cyp7a1 (MGP_CAROLIEiJ_G0025791) #17	Sdcbp (MGP_CAROLIEiJ_G0025792) #18	Nsmaf (MGP_CAROLIEiJ_G0025793) #19	Tox (MGP_CAROLIEiJ_G0025794) #20	Car8 (MGP_CAROLIEiJ_G0025795) #21	Rab2a (MGP_CAROLIEiJ_G0025796) #22	Chd7 (MGP_CAROLIEiJ_G0025797) #23	Clvs1 (MGP_CAROLIEiJ_G0025798) #24	Asph (MGP_CAROLIEiJ_G0025799) #25	Gdf6 (MGP_CAROLIEiJ_G0025800) #26	Cfap418 (MGP_CAROLIEiJ_G0025801) #27	Plekhf2 (MGP_CAROLIEiJ_G0025802) #28	Ndufaf6 (MGP_CAROLIEiJ_G0025803) #29	Trp53inp1 (MGP_CAROLIEiJ_G0025804) #30	Ccne2 (MGP_CAROLIEiJ_G0025805) #31	Ints8 (MGP_CAROLIEiJ_G0025806) #32	Dpy19l4 (MGP_CAROLIEiJ_G0025807) #33	Esrp1 (MGP_CAROLIEiJ_G0025808) #34	Virma (MGP_CAROLIEiJ_G0025809) #35	Rad54b (MGP_CAROLIEiJ_G0025810) #36	Fsbp (MGP_CAROLIEiJ_G0025811) #37
Mus_B	ANCESTRAL SPECIES	22	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Mouse	MODERN SPECIES	13	Mos (ENSMUSG00000078365) #8	Plag1 (ENSMUSG00000003282) #9	Chchd7 (ENSMUSG00000042198) #10	Gm11808 (ENSMUSG00000068240)	Sdr16c5 (ENSMUSG00000028236) #11	Sdr16c6 (ENSMUSG00000071019) #12	Penk (ENSMUSG00000045573) #13	Bpnt2 (ENSMUSG00000066324) #14	Fam110b (ENSMUSG00000049119) #15	Ubxn2b (ENSMUSG00000028243) #16	Cyp7a1 (ENSMUSG00000028240) #17	Sdcbp (ENSMUSG00000028249) #18	Nsmaf (ENSMUSG00000028245) #19	Tox (ENSMUSG00000041272) #20	Car8 (ENSMUSG00000041261) #21	Rab2a (ENSMUSG00000047187) #22	Chd7 (ENSMUSG00000041235) #23	Clvs1 (ENSMUSG00000041216) #24	Asph (ENSMUSG00000028207) #25	Gdf6 (ENSMUSG00000051279) #26	Cfap418 (ENSMUSG00000059482) #27	Plekhf2 (ENSMUSG00000049969) #28	Ndufaf6 (ENSMUSG00000050323) #29	Trp53inp1 (ENSMUSG00000028211) #30	Ccne2 (ENSMUSG00000028212) #31	Ints8 (ENSMUSG00000040738) #32	Dpy19l4 (ENSMUSG00000045205) #33	Esrp1 (ENSMUSG00000040728) #34	Virma (ENSMUSG00000040720) #35	Rad54b (ENSMUSG00000078773) #36	Fsbp (ENSMUSG00000094595) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
spretus	MODERN SPECIES	13	Rps20 (MGP_SPRETEiJ_G0026729) ##7	Mos (MGP_SPRETEiJ_G0026730) #8	Plag1 (MGP_SPRETEiJ_G0026731) #9	Chchd7 (MGP_SPRETEiJ_G0026732) #10	Sdr16c5 (MGP_SPRETEiJ_G0026733) #11	Sdr16c6 (MGP_SPRETEiJ_G0026734) #12	Penk (MGP_SPRETEiJ_G0026735) #13	MGP_SPRETEiJ_G0026736 #14	Fam110b (MGP_SPRETEiJ_G0026737) #15	Ubxn2b (MGP_SPRETEiJ_G0026738) #16	Cyp7a1 (MGP_SPRETEiJ_G0026739) #17	Sdcbp (MGP_SPRETEiJ_G0026740) #18	Nsmaf (MGP_SPRETEiJ_G0026741) #19	Tox (MGP_SPRETEiJ_G0026742) #20	Car8 (MGP_SPRETEiJ_G0026743) #21	Rab2a (MGP_SPRETEiJ_G0026744) #22	Chd7 (MGP_SPRETEiJ_G0026745) #23	Clvs1 (MGP_SPRETEiJ_G0026746) #24	Asph (MGP_SPRETEiJ_G0026747) #25	Gdf6 (MGP_SPRETEiJ_G0026748) #26	Cfap418 (MGP_SPRETEiJ_G0026749) #27	Plekhf2 (MGP_SPRETEiJ_G0026750) #28	Ndufaf6 (MGP_SPRETEiJ_G0026751) #29	Trp53inp1 (MGP_SPRETEiJ_G0026752) #30	Ccne2 (MGP_SPRETEiJ_G0026753) #31	Ints8 (MGP_SPRETEiJ_G0026754) #32	Dpy19l4 (MGP_SPRETEiJ_G0026755) #33	Esrp1 (MGP_SPRETEiJ_G0026756) #34	Virma (MGP_SPRETEiJ_G0026757) #35	Rad54b (MGP_SPRETEiJ_G0026758) #36	Fsbp (MGP_SPRETEiJ_G0026759) #37
Steppe mouse	MODERN SPECIES	2594														ENSMSIG00000026054 #21	ENSMSIG00000026040	Rab2a (ENSMSIG00000026022) #22
Rat	MODERN SPECIES	15	Sdr16c6 (ENSRNOG00000040151) #12	Sdr16c6 (ENSRNOG00000067216) #12	Penk (ENSRNOG00000008943) #13	RGD1563405 (ENSRNOG00000069142)	Bpnt2 (ENSRNOG00000046647) #14	ENSRNOG00000069204	Fam110b (ENSRNOG00000009114) #15	ENSRNOG00000063053	Ubxn2b (ENSRNOG00000071045) #16	Cyp7a1 (ENSRNOG00000009488) #17	Sdcbp (ENSRNOG00000009683) #18	Nsmaf (ENSRNOG00000010234) #19	Tox (ENSRNOG00000010777) #20	Gm5471 (ENSRNOG00000033979)	Car8 (ENSRNOG00000005669) #21	Rab2a (ENSRNOG00000005963) #22	ENSRNOG00000066526	Chd7 (ENSRNOG00000006689) #23	Clvs1 (ENSRNOG00000006919) #24	Asph (ENSRNOG00000007445) #25	Gdf6 (ENSRNOG00000067800) #26	ENSRNOG00000069549	Cfap418 (ENSRNOG00000026672) #27	Plekhf2 (ENSRNOG00000026662) #28	Ndufaf6 (ENSRNOG00000040040) #29	Tp53inp1 (ENSRNOG00000007964) #30	Ccne2 (ENSRNOG00000008055) #31	Ints8 (ENSRNOG00000008124) #32	Dpy19l4 (ENSRNOG00000025416) #33	Esrp1 (ENSRNOG00000008184) #34	RGD1564278 (ENSRNOG00000065922)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Cricetinae	ANCESTRAL SPECIES	31	ENSGT00390000003248.a.a.a.b.db.d #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00390000005213	ENSGT00390000003849	ENSGT00390000010499	ENSGT00940000157709	ENSGT00390000002854	ENSGT00940000153776.a.a	ENSGT01090000260080.b.b	ENSGT00940000162447	ENSGT00940000158260
Chinese hamster chok1gshd	MODERN SPECIES	136	Mos (ENSCGRG00001001977) #8	Plag1 (ENSCGRG00001007120) #9	Chchd7 (ENSCGRG00001011586) #10	Sdr16c5 (ENSCGRG00001012918) #11	Sdr16c6 (ENSCGRG00001015002) #12	Penk (ENSCGRG00001017327) #13	Bpnt2 (ENSCGRG00001020859) #14	Fam110b (ENSCGRG00001016576) #15	Ubxn2b (ENSCGRG00001022571) #16	Cyp7a1 (ENSCGRG00001023767) #17	Sdcbp (ENSCGRG00001024052) #18	Nsmaf (ENSCGRG00001000418) #19	Tox (ENSCGRG00001012296) #20	ENSCGRG00001015202	Car8 (ENSCGRG00001016884) #21	Rab2a (ENSCGRG00001020076) #22	Chd7 (ENSCGRG00001011949) #23	ENSCGRG00001024393	Clvs1 (ENSCGRG00001008079) #24	Asph (ENSCGRG00001022313) #25	Dnajc5b (ENSCGRG00001017516)	Trim55 (ENSCGRG00001018985)	Crh (ENSCGRG00001010399)	ENSCGRG00001002391	Adhfe1 (ENSCGRG00001023501)	Vxn (ENSCGRG00001006925)	Mybl1 (ENSCGRG00001020818)	Vcpip1 (ENSCGRG00001008997)	Sgk3 (ENSCGRG00001013483)	Mcmdc2 (ENSCGRG00001005856)	Tcf24 (ENSCGRG00001018557)
Golden Hamster	MODERN SPECIES	625							ENSMAUG00000011602	Bpnt2 (ENSMAUG00000013404) #14	Ubxn2b (ENSMAUG00000016580) #16	Cyp7a1 (ENSMAUG00000011787) #17	Sdcbp (ENSMAUG00000016347) #18	Nsmaf (ENSMAUG00000008080) #19	Tox (ENSMAUG00000013035) #20	ENSMAUG00000004276	Car8 (ENSMAUG00000016169) #21	Rab2a (ENSMAUG00000017792) #22	Chd7 (ENSMAUG00000001000) #23	ENSMAUG00000016971	ENSMAUG00000018452 #24	ENSMAUG00000021459 #25	Dnajc5b (ENSMAUG00000014916)	Trim55 (ENSMAUG00000012080)	Crh (ENSMAUG00000016669)	Rrs1 (ENSMAUG00000005392)	Adhfe1 (ENSMAUG00000003980)	Vxn (ENSMAUG00000012319)	Mybl1 (ENSMAUG00000021844)	ENSMAUG00000004121	Vcpip1 (ENSMAUG00000014309)	Sgk3 (ENSMAUG00000017645)	Mcmdc2 (ENSMAUG00000003912)
Cricetidae_B	ANCESTRAL SPECIES	50	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000154383.s.a	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000162274 #26	ENSGT00390000006173 #27	ENSGT00940000156408 #28	ENSGT00510000048688 #29	ENSGT00530000063829.A #30	ENSGT00940000156934 #31	ENSGT00390000007597 #32	ENSGT00530000063023.A.b #33	ENSGT00940000159511 #34	ENSGT00390000002833 #35	ENSGT00940000156966 #36	ENSGT00390000008778 #37
Prairie vole	MODERN SPECIES	355	ENSMOCG00000019980 #7	Plag1 (ENSMOCG00000015674) #9	Chchd7 (ENSMOCG00000015783) #10	Sdr16c5 (ENSMOCG00000002710) #11	Sdr16c6 (ENSMOCG00000012126) #12	Penk (ENSMOCG00000005168) #13	ENSMOCG00000003270	Bpnt2 (ENSMOCG00000015732) #14	Fam110b (ENSMOCG00000010757) #15	Ubxn2b (ENSMOCG00000009288) #16	Cyp7a1 (ENSMOCG00000004265) #17	ENSMOCG00000014994 #18	Nsmaf (ENSMOCG00000018628) #19	Tox (ENSMOCG00000013368) #20	Car8 (ENSMOCG00000018985) #21	Rab2a (ENSMOCG00000014140) #22	Chd7 (ENSMOCG00000011408) #23	ENSMOCG00000010657	Clvs1 (ENSMOCG00000013201) #24	Asph (ENSMOCG00000013819) #25	Gdf6 (ENSMOCG00000021011) #26	ENSMOCG00000000256	Cfap418 (ENSMOCG00000019280) #27	ENSMOCG00000002359 #7	Plekhf2 (ENSMOCG00000002768) #28	Ndufaf6 (ENSMOCG00000015272) #29	Trp53inp1 (ENSMOCG00000021132) #30	Ccne2 (ENSMOCG00000001638) #31	Ints8 (ENSMOCG00000017112) #32	Dpy19l4 (ENSMOCG00000007197) #33	Esrp1 (ENSMOCG00000013567) #34
Northern American deer mouse	MODERN SPECIES	11	Plag1 (ENSPEMG00000027390) #9	ENSPEMG00000023256	Sdr16c5 (ENSPEMG00000021917) #11	Sdr16c6 (ENSPEMG00000023129) #12	Penk (ENSPEMG00000016794) #13	ENSPEMG00000015262	Bpnt2 (ENSPEMG00000000461) #14	Fam110b (ENSPEMG00000028969) #15	Ubxn2b (ENSPEMG00000028233) #16	Cyp7a1 (ENSPEMG00000019921) #17	Sdcbp (ENSPEMG00000020043) #18	Nsmaf (ENSPEMG00000019696) #19	Tox (ENSPEMG00000019966) #20	Car8 (ENSPEMG00000019908) #21	ENSPEMG00000012575	Rab2a (ENSPEMG00000001678) #22	Chd7 (ENSPEMG00000023028) #23	Clvs1 (ENSPEMG00000030182) #24	Asph (ENSPEMG00000030609) #25	Gdf6 (ENSPEMG00000005989) #26	ENSPEMG00000028934	ENSPEMG00000027337	Cfap418 (ENSPEMG00000028977) #27	Plekhf2 (ENSPEMG00000013943) #28	Ndufaf6 (ENSPEMG00000018473) #29	Trp53inp1 (ENSPEMG00000029728) #30	Ccne2 (ENSPEMG00000008874) #31	Ints8 (ENSPEMG00000007652) #32	Dpy19l4 (ENSPEMG00000002369) #33	Esrp1 (ENSPEMG00000020410) #34	Virma (ENSPEMG00000002167) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	996															ENSNGAG00000003278	Rab2a (ENSNGAG00000020764) #22	Chd7 (ENSNGAG00000010767) #23	Clvs1 (ENSNGAG00000021348) #24	Asph (ENSNGAG00000015438) #25	ENSNGAG00000002857	Nkain3 (ENSNGAG00000011434)	Ggh (ENSNGAG00000012722)	Ttpa (ENSNGAG00000022878)	Ythdf3 (ENSNGAG00000018434)	ENSNGAG00000006886	Bhlhe22 (ENSNGAG00000010074)	Cyp7b1 (ENSNGAG00000011298) ##17
Lesser Egyptian jerboa	MODERN SPECIES	51	Lyn (ENSJJAG00000014669)	ENSJJAG00000000512 ##7	Plag1 (ENSJJAG00000008706) #9	Chchd7 (ENSJJAG00000004951) #10	Sdr16c5 (ENSJJAG00000012889) #11	Sdr16c6 (ENSJJAG00000005653) #12	Penk (ENSJJAG00000012141) #13	Bpnt2 (ENSJJAG00000016357) #14	Fam110b (ENSJJAG00000011482) #15	Ubxn2b (ENSJJAG00000017241) #16	Cyp7a1 (ENSJJAG00000009993) #17	Sdcbp (ENSJJAG00000008505) #18	Nsmaf (ENSJJAG00000018732) #19	Tox (ENSJJAG00000023957) #20	Car8 (ENSJJAG00000000356) #21	Rab2a (ENSJJAG00000000676) #22	Chd7 (ENSJJAG00000022064) #23	Clvs1 (ENSJJAG00000014044) #24	ENSJJAG00000022655 #25	ENSJJAG00000006659	Nkain3 (ENSJJAG00000019686)	Ggh (ENSJJAG00000019965)	Ttpa (ENSJJAG00000016673)	Ythdf3 (ENSJJAG00000017742)	ENSJJAG00000000742	Bhlhe22 (ENSJJAG00000012012)	Cyp7b1 (ENSJJAG00000019809) ##17	ENSJJAG00000021828	Mtfr1 (ENSJJAG00000000405)	Pde7a (ENSJJAG00000023569)	Dnajc5b (ENSJJAG00000022487)
Kangaroo rat	MODERN SPECIES	328	Chchd7 (ENSDORG00000004592) #10	ENSDORG00000025931	Sdr16c5 (ENSDORG00000004594) #11	Sdr16c6 (ENSDORG00000026488) #12	Penk (ENSDORG00000011721) #13	Bpnt2 (ENSDORG00000015489) #14	ENSDORG00000025951	Fam110b (ENSDORG00000015721) #15	ENSDORG00000026451	Ubxn2b (ENSDORG00000005860) #16	Cyp7a1 (ENSDORG00000004649) #17	Sdcbp (ENSDORG00000006741) #18	Nsmaf (ENSDORG00000006742) #19	Tox (ENSDORG00000011389) #20	Car8 (ENSDORG00000007914) #21	Rab2a (ENSDORG00000025014) #22	Chd7 (ENSDORG00000003515) #23	Clvs1 (ENSDORG00000016281) #24	ENSDORG00000029746 #25	Nkain3 (ENSDORG00000014155)	Ggh (ENSDORG00000015118)	Ttpa (ENSDORG00000016475)	Ythdf3 (ENSDORG00000014699)	Cyp7b1 (ENSDORG00000012789) ##17	ENSDORG00000025631	Armc1 (ENSDORG00000014001)
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00390000003248.a.a.a.b.cb.a.a ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00390000003248.a.a.a.b.cb.a.a ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000173737
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00390000003248.a.a.a.b.cb.a.a ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000173737
Hystricomorpha_b	ANCESTRAL SPECIES	25														ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000173737
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	51	ENSODEG00000016782	ENSODEG00000017114	ADAM8 (ENSODEG00000017169)	TUBGCP2 (ENSODEG00000016798)	ZNF511 (ENSODEG00000017284)	ENSODEG00000017202	CALY (ENSODEG00000016902)	ENSODEG00000016871	FUOM (ENSODEG00000017553)	ECHS1 (ENSODEG00000016897)	PAOX (ENSODEG00000016852)	ENSODEG00000020397	MTG1 (ENSODEG00000016890)	ENSODEG00000020496	ENSODEG00000016399	ENSODEG00000016788 #22	ENSODEG00000016628	ENSODEG00000017267	ENSODEG00000020400	ENSODEG00000020445	CYP2E1 (ENSODEG00000016862)	SYCE1 (ENSODEG00000016895)	ENSODEG00000020452	ENSODEG00000017085	ENSODEG00000016508	PKD2L1 (ENSODEG00000016727)	BLOC1S2 (ENSODEG00000016697)	CWF19L1 (ENSODEG00000017213)	CHUK (ENSODEG00000016580)	ERLIN1 (ENSODEG00000016587)	ENSODEG00000020374
Degu	MODERN SPECIES	98	ENSODEG00000005465	ENSODEG00000019103	ITGB3BP (ENSODEG00000005479)	ENSODEG00000005048	ATG4C (ENSODEG00000005462)	ENSODEG00000019085	ANGPTL3 (ENSODEG00000005471)	ENSODEG00000005344	DOCK7 (ENSODEG00000004836)	ENSODEG00000007065	ENSODEG00000006862	PATJ (ENSODEG00000004922)	TM2D1 (ENSODEG00000004635)	NFIA (ENSODEG00000005024)	ENSODEG00000004370	ENSODEG00000004158 #22
Degu	MODERN SPECIES	193												TOX (ENSODEG00000002296) #20	CA8 (ENSODEG00000002318) #21	ENSODEG00000002330	ENSODEG00000002347	ENSODEG00000002369 #22	ENSODEG00000002379	CHD7 (ENSODEG00000002424) #23	CLVS1 (ENSODEG00000002464) #24	ENSODEG00000002474	ENSODEG00000002498 #25	ENSODEG00000002514	NKAIN3 (ENSODEG00000002570)	ENSODEG00000001936	GGH (ENSODEG00000001955)	TTPA (ENSODEG00000001978)	ENSODEG00000001996	YTHDF3 (ENSODEG00000002033)	ENSODEG00000018832	ENSODEG00000002075	ENSODEG00000002090
Long-tailed chinchilla	MODERN SPECIES	151												TOX (ENSCLAG00000001738) #20	ENSCLAG00000017560	ENSCLAG00000001666	CA8 (ENSCLAG00000001651) #21	RAB2A (ENSCLAG00000005708) #22	CHD7 (ENSCLAG00000004679) #23	CLVS1 (ENSCLAG00000004144) #24	ASPH (ENSCLAG00000002027) #25	ENSCLAG00000001927	NKAIN3 (ENSCLAG00000001900)	ENSCLAG00000017475	GGH (ENSCLAG00000001733)	TTPA (ENSCLAG00000002703)	YTHDF3 (ENSCLAG00000002515)	ENSCLAG00000002409	CYP7B1 (ENSCLAG00000002352) ##17	ARMC1 (ENSCLAG00000002293)	ENSCLAG00000002242	PDE7A (ENSCLAG00000001879)	DNAJC5B (ENSCLAG00000001792)
Guinea pig	MODERN SPECIES	83									ENSCPOG00000013830	UBXN2B (ENSCPOG00000023569) #16	CYP7A1 (ENSCPOG00000003388) #17	SDCBP (ENSCPOG00000013616) #18	NSMAF (ENSCPOG00000013618) #19	TOX (ENSCPOG00000010812) #20	CA8 (ENSCPOG00000025176) #21	RAB2A (ENSCPOG00000035393) #22	CHD7 (ENSCPOG00000013385) #23	CLVS1 (ENSCPOG00000007342) #24	ASPH (ENSCPOG00000007346) #25	PARP4 (ENSCPOG00000014672)	THBS4 (ENSCPOG00000004926)	MTX3 (ENSCPOG00000024084)	CMYA5 (ENSCPOG00000036038)	TENT2 (ENSCPOG00000005462)	HOMER1 (ENSCPOG00000007454)	JMY (ENSCPOG00000008290)	BHMT (ENSCPOG00000039971)	BHMT2 (ENSCPOG00000004265)	DMGDH (ENSCPOG00000001913)	ARSB (ENSCPOG00000040291)	LHFPL2 (ENSCPOG00000035182)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	13	ENSHGLG00000001403 #13	BPNT2 (ENSHGLG00000000762) #14	ENSHGLG00000050642	ENSHGLG00000046743	FAM110B (ENSHGLG00000033905) #15	ENSHGLG00000034318	ENSHGLG00000037232	UBXN2B (ENSHGLG00000015127) #16	CYP7A1 (ENSHGLG00000013778) #17	SDCBP (ENSHGLG00000016054) #18	NSMAF (ENSHGLG00000016249) #19	TOX (ENSHGLG00000017350) #20	ENSHGLG00000021289	CA8 (ENSHGLG00000037508) #21	ENSHGLG00000043102	RAB2A (ENSHGLG00000019399) #22	ENSHGLG00000043844	ENSHGLG00000036380 #23	ENSHGLG00000017268	ENSHGLG00000044094	CLVS1 (ENSHGLG00000009597) #24	ASPH (ENSHGLG00000009811) #25	ENSHGLG00000035266	ENSHGLG00000039677	NKAIN3 (ENSHGLG00000005384)	ENSHGLG00000014967	ENSHGLG00000018653	TTPA (ENSHGLG00000044950)	YTHDF3 (ENSHGLG00000009954)	ENSHGLG00000005832	ENSHGLG00000040702
Naked mole-rat female	MODERN SPECIES	18	FNTB (ENSHGLG00000009039)	RAB15 (ENSHGLG00000049844)	GPX2 (ENSHGLG00000042514)	CHURC1 (ENSHGLG00000032947)	ENSHGLG00000021205	SPTB (ENSHGLG00000016387)	PLEKHG3 (ENSHGLG00000009757)	PPP1R36 (ENSHGLG00000014692)	HSPA2 (ENSHGLG00000011390)	ENSHGLG00000034454	AKAP5 (ENSHGLG00000043230)	ZBTB25 (ENSHGLG00000039349)	MTHFD1 (ENSHGLG00000009911)	ENSHGLG00000011837	ESR2 (ENSHGLG00000010137)	ENSHGLG00000040027 #22	SYNE2 (ENSHGLG00000041046)	ENSHGLG00000046783	ENSHGLG00000019578	ENSHGLG00000046704	ENSHGLG00000037922	WDR89 (ENSHGLG00000037580)	ENSHGLG00000039674	PPP2R5E (ENSHGLG00000012357)	GPHB5 (ENSHGLG00000046983)	ENSHGLG00000033236	ENSHGLG00000036980	ENSHGLG00000010765	ENSHGLG00000047911	ENSHGLG00000039777	ENSHGLG00000047278
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00390000003248.a.a.a.b.db #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Eurasian red squirrel	MODERN SPECIES		PLAG1 (ENSSVLG00005010731) #9	CHCHD7 (ENSSVLG00005010790) #10	ENSSVLG00005010860	SDR16C5 (ENSSVLG00005010895) #11	ENSSVLG00005010971 #12	PENK (ENSSVLG00005011127) #13	BPNT2 (ENSSVLG00005011167) #14	FAM110B (ENSSVLG00005011236) #15	UBXN2B (ENSSVLG00005011261) #16	CYP7A1 (ENSSVLG00005011337) #17	SDCBP (ENSSVLG00005011445) #18	NSMAF (ENSSVLG00005011910) #19	TOX (ENSSVLG00005011958) #20	CA8 (ENSSVLG00005012006) #21	ENSSVLG00005012111	RAB2A (ENSSVLG00005012184) #22	CHD7 (ENSSVLG00005012393) #23	CLVS1 (ENSSVLG00005012977) #24	ASPH (ENSSVLG00005014187) #25	ENSSVLG00005015514	NKAIN3 (ENSSVLG00005015548)	GGH (ENSSVLG00005015596)	TTPA (ENSSVLG00005015622)	YTHDF3 (ENSSVLG00005015698)	ENSSVLG00005015802	ENSSVLG00005015850	BHLHE22 (ENSSVLG00005015886)	CYP7B1 (ENSSVLG00005015905) ##17	ENSSVLG00005015964	ARMC1 (ENSSVLG00005016014)	ENSSVLG00005016165
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000161902.a.a	ENSGT00940000156118	ENSGT00940000160438	ENSGT00950000182978.A.a.b.a	ENSGT01090000260093.a	ENSGT00390000001710	ENSGT00510000046470.a.a.a.d.a	ENSGT00900000143241	ENSGT00950000183021.a.a.b	ENSGT00940000159454	ENSGT01080000257410.B.a	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000167616.a	ENSGT00940000159294
Marmotini_b	ANCESTRAL SPECIES	52	ENSGT00940000156118	ENSGT00940000160438	ENSGT00950000182978.A.a.b.a	ENSGT01090000260093.a	ENSGT00390000001710	ENSGT00510000046470.a.a.a.d.a	ENSGT00900000143241	ENSGT00950000183021.a.a.b	ENSGT00940000159454	ENSGT01080000257410.B.a	ENSGT00390000016584.p	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000167616.a	ENSGT00940000159294
Arctic ground squirrel	MODERN SPECIES	80											ENSUPAG00010019717	SDCBP (ENSUPAG00010019704) #18	NSMAF (ENSUPAG00010019682) #19	TOX (ENSUPAG00010019670) #20	CA8 (ENSUPAG00010019651) #21	RAB2A (ENSUPAG00010019636) #22	CHD7 (ENSUPAG00010019570) #23	CLVS1 (ENSUPAG00010019560) #24	ASPH (ENSUPAG00010019120) #25	ENSUPAG00010019110	NKAIN3 (ENSUPAG00010019087)	GGH (ENSUPAG00010019076)	TTPA (ENSUPAG00010019070)	YTHDF3 (ENSUPAG00010019052)	ENSUPAG00010019047	BHLHE22 (ENSUPAG00010019042)	CYP7B1 (ENSUPAG00010019040) ##17
Squirrel	MODERN SPECIES	96						LACTB2 (ENSSTOG00000005569)	TRAM1 (ENSSTOG00000005537)	NCOA2 (ENSSTOG00000022157)	PRDM14 (ENSSTOG00000020543)	SLCO5A1 (ENSSTOG00000002338)	ENSSTOG00000005383	SDCBP (ENSSTOG00000007997) #18	NSMAF (ENSSTOG00000008019) #19	TOX (ENSSTOG00000011232) #20	CA8 (ENSSTOG00000008128) #21	RAB2A (ENSSTOG00000023606) #22	CHD7 (ENSSTOG00000011949) #23	CLVS1 (ENSSTOG00000012324) #24	ASPH (ENSSTOG00000012328) #25	NKAIN3 (ENSSTOG00000021789)	GGH (ENSSTOG00000013290)	TTPA (ENSSTOG00000013299)	YTHDF3 (ENSSTOG00000027792)	CYP7B1 (ENSSTOG00000010923) ##17	ARMC1 (ENSSTOG00000002727)	MTFR1 (ENSSTOG00000008771)	PDE7A (ENSSTOG00000008795)	DNAJC5B (ENSSTOG00000007308)	ENSSTOG00000030733	TRIM55 (ENSSTOG00000007318)	CRH (ENSSTOG00000005146)
Alpin marmot	MODERN SPECIES	16	MSC (ENSMMMG00000004901)	EYA1 (ENSMMMG00000004783)	XKR9 (ENSMMMG00000004758)	LACTB2 (ENSMMMG00000004742)	TRAM1 (ENSMMMG00000004176)	ENSMMMG00000004157	ENSMMMG00000004137	NCOA2 (ENSMMMG00000003994)	PRDM14 (ENSMMMG00000003951)	SLCO5A1 (ENSMMMG00000003820)	SDCBP (ENSMMMG00000003758) #18	NSMAF (ENSMMMG00000003716) #19	TOX (ENSMMMG00000003707) #20	CA8 (ENSMMMG00000003649) #21	ENSMMMG00000003620 ##22	ENSMMMG00000003618 #22	CHD7 (ENSMMMG00000003455) #23	CLVS1 (ENSMMMG00000003433) #24	ASPH (ENSMMMG00000003021) #25	NKAIN3 (ENSMMMG00000002955)	GGH (ENSMMMG00000002919)	TTPA (ENSMMMG00000002905)	YTHDF3 (ENSMMMG00000002881)	ENSMMMG00000002871	CYP7B1 (ENSMMMG00000002861) ##17	ENSMMMG00000002852	ENSMMMG00000002848	ARMC1 (ENSMMMG00000002830)	MTFR1 (ENSMMMG00000002790)	PDE7A (ENSMMMG00000002696)	ENSMMMG00000002690
Lagomorpha	ANCESTRAL SPECIES	20									ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Pika	MODERN SPECIES	3913																RAB2A (ENSOPRG00000016662) #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	5	TBC1D5 (ENSOCUG00000016596)	PLCL2 (ENSOCUG00000008317)	RFTN1 (ENSOCUG00000015875)	ENSOCUG00000026336	OXNAD1 (ENSOCUG00000015868)	DPH3 (ENSOCUG00000015862)	ENSOCUG00000039398	GALNT15 (ENSOCUG00000025111)	ANKRD28 (ENSOCUG00000008568)	BTD (ENSOCUG00000008562)	HACL1 (ENSOCUG00000000765)	COLQ (ENSOCUG00000016105)	EAF1 (ENSOCUG00000016089)	METTL6 (ENSOCUG00000016078)	SH3BP5 (ENSOCUG00000010501)	ENSOCUG00000037099 #22	CAPN7 (ENSOCUG00000007287)	HMGB1 (ENSOCUG00000024061)	COL6A5 (ENSOCUG00000024036)	COL6A6 (ENSOCUG00000002486)	PIK3R4 (ENSOCUG00000002495)	ATP2C1 (ENSOCUG00000021839)	ASTE1 (ENSOCUG00000006842)	NEK11 (ENSOCUG00000006846)	ENSOCUG00000021680
Rabbit	MODERN SPECIES	14	ENSOCUG00000023853 #12	ENSOCUG00000007052 #13	ENSOCUG00000012122	ENSOCUG00000033892	BPNT2 (ENSOCUG00000004428) #14	ENSOCUG00000034482	ENSOCUG00000034339	ENSOCUG00000035749	FAM110B (ENSOCUG00000028224) #15	UBXN2B (ENSOCUG00000023461) #16	CYP7A1 (ENSOCUG00000012283) #17	SDCBP (ENSOCUG00000016206) #18	NSMAF (ENSOCUG00000016215) #19	TOX (ENSOCUG00000005263) #20	ENSOCUG00000026525 #21	ENSOCUG00000002955 #22	CHD7 (ENSOCUG00000010034) #23	CLVS1 (ENSOCUG00000005338) #24	ENSOCUG00000021079 #25	ENSOCUG00000028110	ENSOCUG00000010378	ENSOCUG00000035132	GGH (ENSOCUG00000003031)	ENSOCUG00000021164	YTHDF3 (ENSOCUG00000008723)	ENSOCUG00000035436	ENSOCUG00000031393	CYP7B1 (ENSOCUG00000000440) ##17	BHLHE22 (ENSOCUG00000012968)	ENSOCUG00000038967	ARMC1 (ENSOCUG00000000392)
Tree shrew	MODERN SPECIES	28																RAB2A (ENSTBEG00000001302) #22	CHD7 (ENSTBEG00000001540) #23
Primates	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Haplorrhini	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Simiiformes	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.e #19	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Rhinopithecus	ANCESTRAL SPECIES	595														ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484
Black snub-nosed monkey	MODERN SPECIES	1141																RAB2A (ENSRBIG00000037603) #22	ENSRBIG00000035328	CHD7 (ENSRBIG00000043575) #23	CLVS1 (ENSRBIG00000027946) #24	ASPH (ENSRBIG00000039872) #25	ENSRBIG00000034531	ENSRBIG00000030945	GGH (ENSRBIG00000043388)	TTPA (ENSRBIG00000027922)	YTHDF3 (ENSRBIG00000036465)
Golden snub-nosed monkey	MODERN SPECIES	876														CA8 (ENSRROG00000032644) #21	ENSRROG00000037868	RAB2A (ENSRROG00000031181) #22	CHD7 (ENSRROG00000008981) #23	CLVS1 (ENSRROG00000032606) #24	ASPH (ENSRROG00000042903) #25	NKAIN3 (ENSRROG00000030275)	ENSRROG00000029992	GGH (ENSRROG00000037309)	TTPA (ENSRROG00000033955)	YTHDF3 (ENSRROG00000035231)
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Vervet Monkey	MODERN SPECIES	27	ENSCSAG00000014589	MOS (ENSCSAG00000018547) #8	PLAG1 (ENSCSAG00000014574) #9	CHCHD7 (ENSCSAG00000014569) #10	SDR16C5 (ENSCSAG00000014558) #11	PENK (ENSCSAG00000014552) #13	BPNT2 (ENSCSAG00000014546) #14	ENSCSAG00000018548	FAM110B (ENSCSAG00000018549) #15	UBXN2B (ENSCSAG00000014542) #16	CYP7A1 (ENSCSAG00000014532) #17	ENSCSAG00000014518 #18	ENSCSAG00000014470 #19	TOX (ENSCSAG00000014375) #20	CA8 (ENSCSAG00000014368) #21	RAB2A (ENSCSAG00000014359) #22	CHD7 (ENSCSAG00000014349) #23	CLVS1 (ENSCSAG00000014326) #24	ASPH (ENSCSAG00000014318) #25	ENSCSAG00000014301	GGH (ENSCSAG00000014295)	TTPA (ENSCSAG00000014286)	YTHDF3 (ENSCSAG00000014280)	BHLHE22 (ENSCSAG00000018550)	CYP7B1 (ENSCSAG00000014274) ##17	ARMC1 (ENSCSAG00000014269)	MTFR1 (ENSCSAG00000014261)	PDE7A (ENSCSAG00000014253)	DNAJC5B (ENSCSAG00000014246)	TRIM55 (ENSCSAG00000014237)	CRH (ENSCSAG00000018551)
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000155762	ENSGT00940000154502.g.b.a.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00510000048041.p	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000148180	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Macaca	ANCESTRAL SPECIES	14	ENSGT00840000130804	ENSGT00910000147608	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000155762	ENSGT00940000154502.g.b.a.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00510000048041.p	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000148180	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Pig-tailed macaque	MODERN SPECIES	580	SDR16C5 (ENSMNEG00000032388) #11	PENK (ENSMNEG00000035854) #13	BPNT2 (ENSMNEG00000030740) #14	ENSMNEG00000042237	ENSMNEG00000023891	UBXN2B (ENSMNEG00000041477) #16	CYP7A1 (ENSMNEG00000040092) #17	ENSMNEG00000005216	SDCBP (ENSMNEG00000039350) #18	ENSMNEG00000006454	ENSMNEG00000033392 #19	TOX (ENSMNEG00000030315) #20	CA8 (ENSMNEG00000028797) #21	ENSMNEG00000036170	ENSMNEG00000044279	RAB2A (ENSMNEG00000037175) #22	CHD7 (ENSMNEG00000040978) #23	CLVS1 (ENSMNEG00000035587) #24	ASPH (ENSMNEG00000030091) #25	NKAIN3 (ENSMNEG00000028843)	GGH (ENSMNEG00000030108)	TTPA (ENSMNEG00000036364)	YTHDF3 (ENSMNEG00000031200)	ENSMNEG00000043151	ENSMNEG00000004932	ENSMNEG00000000587	BHLHE22 (ENSMNEG00000028116)	CYP7B1 (ENSMNEG00000040346) ##17	ARMC1 (ENSMNEG00000036022)	MTFR1 (ENSMNEG00000029834)	PDE7A (ENSMNEG00000037086)
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00910000148230	ENSGT00940000154004.a
Crab-eating macaque	MODERN SPECIES	18	SDR16C5 (ENSMFAG00000002079) #11	ENSMFAG00000059119 #12	PENK (ENSMFAG00000031729) #13	ENSMFAG00000061878	BPNT2 (ENSMFAG00000034283) #14	FAM110B (ENSMFAG00000038229) #15	UBXN2B (ENSMFAG00000014095) #16	CYP7A1 (ENSMFAG00000041863) #17	ENSMFAG00000049240	SDCBP (ENSMFAG00000037999) #18	NSMAF (ENSMFAG00000003576) #19	TOX (ENSMFAG00000017703) #20	ENSMFAG00000061251	CA8 (ENSMFAG00000033479) #21	ENSMFAG00000002780	RAB2A (ENSMFAG00000037805) #22	CHD7 (ENSMFAG00000041825) #23	ENSMFAG00000062252	CLVS1 (ENSMFAG00000035625) #24	ASPH (ENSMFAG00000031456) #25	NKAIN3 (ENSMFAG00000002073)	GGH (ENSMFAG00000020821)	TTPA (ENSMFAG00000035514)	YTHDF3 (ENSMFAG00000043451)	ENSMFAG00000047814	ENSMFAG00000051224	CYP7B1 (ENSMFAG00000013431) ##17	ENSMFAG00000050585	ARMC1 (ENSMFAG00000020573)	MTFR1 (ENSMFAG00000042646)	PDE7A (ENSMFAG00000034489)
Rhesus	MODERN SPECIES	18	SDR16C5 (ENSMMUG00000014810) #11	ENSMMUG00000052791 #12	PENK (ENSMMUG00000006775) #13	BPNT2 (ENSMMUG00000014650) #14	ENSMMUG00000053023	FAM110B (ENSMMUG00000055289) #15	UBXN2B (ENSMMUG00000001100) #16	ENSMMUG00000064769	CYP7A1 (ENSMMUG00000006543) #17	ENSMMUG00000010354	SDCBP (ENSMMUG00000017296) #18	ENSMMUG00000017297 #19	TOX (ENSMMUG00000010971) #20	CA8 (ENSMMUG00000006437) #21	ENSMMUG00000037723	RAB2A (ENSMMUG00000017038) #22	CHD7 (ENSMMUG00000011584) #23	CLVS1 (ENSMMUG00000008774) #24	ASPH (ENSMMUG00000008777) #25	NKAIN3 (ENSMMUG00000009144)	GGH (ENSMMUG00000055148)	TTPA (ENSMMUG00000054577)	YTHDF3 (ENSMMUG00000006729)	BHLHE22 (ENSMMUG00000038208)	CYP7B1 (ENSMMUG00000004411) ##17	ARMC1 (ENSMMUG00000028974)	MTFR1 (ENSMMUG00000011263)	PDE7A (ENSMMUG00000011262)	DNAJC5B (ENSMMUG00000021585)	ENSMMUG00000058626	TRIM55 (ENSMMUG00000021586)
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000155762	ENSGT00940000154502.g.b.a.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000154502.h #18	ENSGT00940000155059.f.a.b #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00510000048041.p	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00940000154795	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000148180	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b
Olive baboon	MODERN SPECIES	18	ENSPANG00000048475	BPNT2 (ENSPANG00000008388) #14	ENSPANG00000050330	ENSPANG00000042702	ENSPANG00000042586	ENSPANG00000044863	ENSPANG00000041025	FAM110B (ENSPANG00000013667) #15	UBXN2B (ENSPANG00000014734) #16	CYP7A1 (ENSPANG00000017844) #17	ENSPANG00000032802	SDCBP (ENSPANG00000015123) #18	NSMAF (ENSPANG00000021868) #19	TOX (ENSPANG00000021717) #20	CA8 (ENSPANG00000018133) #21	RAB2A (ENSPANG00000021867) #22	CHD7 (ENSPANG00000018419) #23	CLVS1 (ENSPANG00000026086) #24	ASPH (ENSPANG00000008510) #25	NKAIN3 (ENSPANG00000030730)	GGH (ENSPANG00000000687)	TTPA (ENSPANG00000018418)	YTHDF3 (ENSPANG00000008030)	ENSPANG00000010710	ENSPANG00000044403	BHLHE22 (ENSPANG00000006045)	CYP7B1 (ENSPANG00000007058) ##17	ARMC1 (ENSPANG00000011412)	MTFR1 (ENSPANG00000018058)	PDE7A (ENSPANG00000006872)	DNAJC5B (ENSPANG00000033679)
Cercopithecinae_d	ANCESTRAL SPECIES	31	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00910000147608	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000155762	ENSGT00940000154502.g.b.a.a #18	ENSGT00940000155059.f.b #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00390000003682.ib.a.b.f.a.b	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00510000048041.p	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00940000154795	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000148180	ENSGT00910000147681	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Drill	MODERN SPECIES	847					UBXN2B (ENSMLEG00000038402) #16	CYP7A1 (ENSMLEG00000035396) #17	ENSMLEG00000017871	SDCBP (ENSMLEG00000030406) #18	ENSMLEG00000016249	ENSMLEG00000035803 #19	TOX (ENSMLEG00000035578) #20	ENSMLEG00000028290	CA8 (ENSMLEG00000040962) #21	ENSMLEG00000032916	ENSMLEG00000042370	RAB2A (ENSMLEG00000041449) #22	CHD7 (ENSMLEG00000038817) #23	CLVS1 (ENSMLEG00000001244) #24	ASPH (ENSMLEG00000043146) #25	ENSMLEG00000020449	NKAIN3 (ENSMLEG00000042804)	GGH (ENSMLEG00000042599)	TTPA (ENSMLEG00000038644)	YTHDF3 (ENSMLEG00000036763)
Sooty mangabey	MODERN SPECIES	647																RAB2A (ENSCATG00000028334) #22	CHD7 (ENSCATG00000020229) #23	CLVS1 (ENSCATG00000030286) #24	ASPH (ENSCATG00000037051) #25	NKAIN3 (ENSCATG00000040480)	ENSCATG00000031297	GGH (ENSCATG00000031907)	ENSCATG00000020757	TTPA (ENSCATG00000037149)	YTHDF3 (ENSCATG00000038669)	ENSCATG00000036275	ENSCATG00000016419	ENSCATG00000016486	CYP7B1 (ENSCATG00000037154) ##17	ARMC1 (ENSCATG00000037424)	MTFR1 (ENSCATG00000038587)
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00390000005254.i.a.b.n.a	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.e #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.c	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00910000148230	ENSGT00940000159294	ENSGT00940000154004.a
Gibbon	MODERN SPECIES	6	ENSNLEG00000001238 #10	SDR16C5 (ENSNLEG00000001266) #11	PENK (ENSNLEG00000001307) #13	ENSNLEG00000029194	BPNT2 (ENSNLEG00000001322) #14	UBXN2B (ENSNLEG00000033129) #16	ENSNLEG00000034722	CYP7A1 (ENSNLEG00000001373) #17	SDCBP (ENSNLEG00000001408) #18	NSMAF (ENSNLEG00000001542) #19	ENSNLEG00000032927	ENSNLEG00000035613	TOX (ENSNLEG00000001791) #20	CA8 (ENSNLEG00000001830) #21	ENSNLEG00000029912	RAB2A (ENSNLEG00000036148) #22	CHD7 (ENSNLEG00000002027) #23	ENSNLEG00000033557	ENSNLEG00000035467	ENSNLEG00000033932	ENSNLEG00000002143	CLVS1 (ENSNLEG00000002146) #24	ASPH (ENSNLEG00000002208) #25	ERICH5 (ENSNLEG00000002460)	RIDA (ENSNLEG00000027254)	POP1 (ENSNLEG00000002541)	NIPAL2 (ENSNLEG00000002626)	ENSNLEG00000030963	STK3 (ENSNLEG00000002668)	ENSNLEG00000027654	ENSNLEG00000002725
Hominidae	ANCESTRAL SPECIES	15	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00390000005254.i.a.b.n.a	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.e #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.c	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00910000148230	ENSGT00940000159294	ENSGT00940000154004.a
Orangutan	MODERN SPECIES	21	LYN (ENSPPYG00000018598)	ENSPPYG00000037731 ##7	MOS (ENSPPYG00000018601) #8	PLAG1 (ENSPPYG00000018602) #9	ENSPPYG00000018604 #10	SDR16C5 (ENSPPYG00000018605) #11	PENK (ENSPPYG00000018606) #13	ENSPPYG00000030167	BPNT2 (ENSPPYG00000018607) #14	UBXN2B (ENSPPYG00000018610) #16	CYP7A1 (ENSPPYG00000018611) #17	SDCBP (ENSPPYG00000018612) #18	NSMAF (ENSPPYG00000018613) #19	TOX (ENSPPYG00000018614) #20	CA8 (ENSPPYG00000018615) #21	RAB2A (ENSPPYG00000018617) #22	CHD7 (ENSPPYG00000018618) #23	ENSPPYG00000036142	ENSPPYG00000039758	CLVS1 (ENSPPYG00000018621) #24	ASPH (ENSPPYG00000018622) #25	NKAIN3 (ENSPPYG00000018623)	GGH (ENSPPYG00000018624)	TTPA (ENSPPYG00000040852)	YTHDF3 (ENSPPYG00000018626)	ENSPPYG00000018628	CYP7B1 (ENSPPYG00000018629) ##17	ENSPPYG00000030990	ARMC1 (ENSPPYG00000018630)	MTFR1 (ENSPPYG00000018631)	PDE7A (ENSPPYG00000018632)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00940000160216 #14	ENSGT00910000148739	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b.c.a #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b.d #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.e #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00950000183913	ENSGT00940000158863 #21	ENSGT00910000147170	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00900000143563.d	ENSGT00390000016650.g.b	ENSGT00940000153052.c.a.b	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000157752.b	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.c	ENSGT00950000183215.c.a.b
Gorilla	MODERN SPECIES	21	SDR16C5 (ENSGGOG00000004025) #11	PENK (ENSGGOG00000016266) #13	BPNT2 (ENSGGOG00000025130) #14	ENSGGOG00000036414	ENSGGOG00000027156	ENSGGOG00000043065	ENSGGOG00000044170	ENSGGOG00000016080 #16	CYP7A1 (ENSGGOG00000023783) #17	SDCBP (ENSGGOG00000009019) #18	NSMAF (ENSGGOG00000004827) #19	TOX (ENSGGOG00000012139) #20	ENSGGOG00000043542	CA8 (ENSGGOG00000026186) #21	ENSGGOG00000039477	RAB2A (ENSGGOG00000043049) #22	ENSGGOG00000043906	CHD7 (ENSGGOG00000012224) #23	ENSGGOG00000041942	ENSGGOG00000023384	ENSGGOG00000028098	CLVS1 (ENSGGOG00000007625) #24	ASPH (ENSGGOG00000008863) #25	ENSGGOG00000024136	NKAIN3 (ENSGGOG00000034874)	GGH (ENSGGOG00000007739)	ENSGGOG00000004878	YTHDF3 (ENSGGOG00000027681)	ENSGGOG00000039212	ENSGGOG00000039770	ENSGGOG00000037514
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00910000148739	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b.c.a #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00520000055567.a.a.b.d #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.h #18	ENSGT00940000155059.f.b #19	ENSGT00940000154502.g.b.a #18	ENSGT00940000155059.e #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00950000183913	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00390000016650.g.b	ENSGT00940000153052.c.a.b	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000157752.b	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.c	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Human	MODERN SPECIES	20	LYN (ENSG00000254087)	RPS20 (ENSG00000008988) #7	MOS (ENSG00000172680) #8	PLAG1 (ENSG00000181690) #9	CHCHD7 (ENSG00000170791) #10	SDR16C5 (ENSG00000170786) #11	PENK (ENSG00000181195) #13	BPNT2 (ENSG00000104331) #14	FAM110B (ENSG00000169122) #15	UBXN2B (ENSG00000215114) #16	CYP7A1 (ENSG00000167910) #17	SDCBP (ENSG00000137575) #18	NSMAF (ENSG00000035681) #19	TOX (ENSG00000198846) #20	CA8 (ENSG00000178538) #21	RAB2A (ENSG00000104388) #22	CHD7 (ENSG00000171316) #23	CLVS1 (ENSG00000177182) #24	ASPH (ENSG00000198363) #25	NKAIN3 (ENSG00000185942)	GGH (ENSG00000137563)	TTPA (ENSG00000137561)	YTHDF3 (ENSG00000185728)	BHLHE22 (ENSG00000180828)	CYP7B1 (ENSG00000172817) ##17	ARMC1 (ENSG00000104442)	MTFR1 (ENSG00000066855)	PDE7A (ENSG00000205268)	DNAJC5B (ENSG00000147570)	TRIM55 (ENSG00000147573)	CRH (ENSG00000147571)
Pan	ANCESTRAL SPECIES	11	ENSGT00940000155238.k.b	ENSGT00390000005254.i.a.b.n.a	ENSGT00940000160216 #14	ENSGT00910000148739	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b.c.a #16	ENSGT00940000153876.B.j.a.b.a	ENSGT00940000153141.B.a #17	ENSGT00940000154502.h #18	ENSGT00940000155059.e #19	ENSGT00910000147347	ENSGT00940000159497 #20	ENSGT00950000183913	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00390000016650.g.b	ENSGT00940000153052.c.a.b	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000157752.b	ENSGT00940000161484	ENSGT00940000154795.c	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.c
Chimpanzee	MODERN SPECIES	21	ENSPTRG00000046053	ENSPTRG00000049159	BPNT2 (ENSPTRG00000020271) #14	ENSPTRG00000051826	ENSPTRG00000047634	FAM110B (ENSPTRG00000044402) #15	UBXN2B (ENSPTRG00000033886) #16	ENSPTRG00000051087	CYP7A1 (ENSPTRG00000020275) #17	SDCBP (ENSPTRG00000020277) #18	NSMAF (ENSPTRG00000020279) #19	ENSPTRG00000044166	TOX (ENSPTRG00000020281) #20	ENSPTRG00000045756	CA8 (ENSPTRG00000020283) #21	RAB2A (ENSPTRG00000020284) #22	CHD7 (ENSPTRG00000020286) #23	ENSPTRG00000048385	CLVS1 (ENSPTRG00000020288) #24	ENSPTRG00000052386	ASPH (ENSPTRG00000020289) #25	ENSPTRG00000042694	NKAIN3 (ENSPTRG00000020292)	ENSPTRG00000046745	ENSPTRG00000043036	GGH (ENSPTRG00000020293)	TTPA (ENSPTRG00000020294)	YTHDF3 (ENSPTRG00000049135)	ENSPTRG00000048438	ENSPTRG00000050724	ENSPTRG00000022575
Bonobo	MODERN SPECIES	21	PENK (ENSPPAG00000043514) #13	ENSPPAG00000002731	ENSPPAG00000040415	BPNT2 (ENSPPAG00000042643) #14	ENSPPAG00000032162	ENSPPAG00000035036 #16	ENSPPAG00000037576	CYP7A1 (ENSPPAG00000043585) #17	ENSPPAG00000038846 #18	NSMAF (ENSPPAG00000028955) #19	ENSPPAG00000035380	ENSPPAG00000032155	TOX (ENSPPAG00000036301) #20	ENSPPAG00000036688	CA8 (ENSPPAG00000037018) #21	RAB2A (ENSPPAG00000030918) #22	CHD7 (ENSPPAG00000033330) #23	ENSPPAG00000036715	CLVS1 (ENSPPAG00000033393) #24	ENSPPAG00000028711	ASPH (ENSPPAG00000036467) #25	ENSPPAG00000029474	NKAIN3 (ENSPPAG00000034556)	ENSPPAG00000035311	ENSPPAG00000032702	GGH (ENSPPAG00000036800)	TTPA (ENSPPAG00000039436)	ENSPPAG00000001547	YTHDF3 (ENSPPAG00000043483)	ENSPPAG00000041014	ENSPPAG00000032241
Platyrrhini	ANCESTRAL SPECIES	17	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000153571.a.eb	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203.b	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Mas night monkey	MODERN SPECIES	249	ENSANAG00000027241	PLAG1 (ENSANAG00000023401) #9	CHCHD7 (ENSANAG00000022037) #10	SDR16C5 (ENSANAG00000035994) #11	PENK (ENSANAG00000017945) #13	ENSANAG00000002536	BPNT2 (ENSANAG00000021522) #14	FAM110B (ENSANAG00000019375) #15	ENSANAG00000038124	UBXN2B (ENSANAG00000034539) #16	CYP7A1 (ENSANAG00000019928) #17	SDCBP (ENSANAG00000029608) #18	NSMAF (ENSANAG00000027618) #19	TOX (ENSANAG00000037539) #20	CA8 (ENSANAG00000022483) #21	RAB2A (ENSANAG00000035405) #22	CHD7 (ENSANAG00000035300) #23	CLVS1 (ENSANAG00000036167) #24	ASPH (ENSANAG00000030226) #25	ENSANAG00000033475	GGH (ENSANAG00000037430)	TTPA (ENSANAG00000026480)	ENSANAG00000027281	YTHDF3 (ENSANAG00000037920)	ENSANAG00000025634	ENSANAG00000025372	CYP7B1 (ENSANAG00000023804) ##17	ARMC1 (ENSANAG00000028594)	MTFR1 (ENSANAG00000033406)	PDE7A (ENSANAG00000021253)	DNAJC5B (ENSANAG00000036123)
Cebidae	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000153571.a.eb	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203.a	ENSGT00940000159203.b	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Cebidae_a	ANCESTRAL SPECIES	54	ENSGT00940000161696.c.a.a	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000153571.a.eb	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00940000153239.B.i.a.a	ENSGT00490000043388.b.a	ENSGT00940000159203.b	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Bolivian squirrel monkey	MODERN SPECIES	116	ENSSBOG00000024676	PLAG1 (ENSSBOG00000033202) #9	CHCHD7 (ENSSBOG00000001463) #10	SDR16C5 (ENSSBOG00000017860) #11	ENSSBOG00000030581 #12	PENK (ENSSBOG00000027180) #13	ENSSBOG00000023239	BPNT2 (ENSSBOG00000021056) #14	ENSSBOG00000020724	UBXN2B (ENSSBOG00000026177) #16	CYP7A1 (ENSSBOG00000021502) #17	SDCBP (ENSSBOG00000023954) #18	NSMAF (ENSSBOG00000025474) #19	TOX (ENSSBOG00000033601) #20	CA8 (ENSSBOG00000023844) #21	RAB2A (ENSSBOG00000025313) #22	CHD7 (ENSSBOG00000021462) #23	CLVS1 (ENSSBOG00000032167) #24	ASPH (ENSSBOG00000030161) #25	NKAIN3 (ENSSBOG00000027801)	ENSSBOG00000030459	GGH (ENSSBOG00000023367)	TTPA (ENSSBOG00000026827)	YTHDF3 (ENSSBOG00000035287)	ENSSBOG00000024487	ENSSBOG00000027805	CYP7B1 (ENSSBOG00000030196) ##17	ENSSBOG00000021813	ENSSBOG00000026145	PDE7A (ENSSBOG00000003831)	DNAJC5B (ENSSBOG00000027072)
Capuchin	MODERN SPECIES	199	LRRC39 (ENSCCAG00000034937)	TRMT13 (ENSCCAG00000023772)	SASS6 (ENSCCAG00000025767)	MFSD14A (ENSCCAG00000025510)	ENSCCAG00000032084	AGL (ENSCCAG00000034060)	FRRS1 (ENSCCAG00000015161)	PALMD (ENSCCAG00000023066)	FAM110B (ENSCCAG00000017213) #15	UBXN2B (ENSCCAG00000030065) #16	CYP7A1 (ENSCCAG00000021000) #17	SDCBP (ENSCCAG00000035282) #18	NSMAF (ENSCCAG00000034122) #19	TOX (ENSCCAG00000022985) #20	CA8 (ENSCCAG00000028223) #21	RAB2A (ENSCCAG00000025945) #22	CHD7 (ENSCCAG00000025831) #23	CLVS1 (ENSCCAG00000022708) #24	ASPH (ENSCCAG00000019698) #25
Marmoset	MODERN SPECIES	7	FAM110B (ENSCJAG00000008657) #15	ENSCJAG00000073685	UBXN2B (ENSCJAG00000008666) #16	CYP7A1 (ENSCJAG00000008684) #17	SDCBP (ENSCJAG00000008697) #18	NSMAF (ENSCJAG00000008834) #19	ENSCJAG00000070948	ENSCJAG00000082557	ENSCJAG00000052054	TOX (ENSCJAG00000008958) #20	ENSCJAG00000051398	ENSCJAG00000072177	ENSCJAG00000044576	ENSCJAG00000078019	CA8 (ENSCJAG00000008976) #21	RAB2A (ENSCJAG00000009000) #22	CHD7 (ENSCJAG00000009025) #23	CLVS1 (ENSCJAG00000040445) #24	ASPH (ENSCJAG00000009122) #25	ENSCJAG00000073133	NKAIN3 (ENSCJAG00000067094)	GGH (ENSCJAG00000009191)	TTPA (ENSCJAG00000009205)	YTHDF3 (ENSCJAG00000009217)	ENSCJAG00000074156	CYP7B1 (ENSCJAG00000009244) ##17	ENSCJAG00000070972	ENSCJAG00000074189	ARMC1 (ENSCJAG00000009253)	MTFR1 (ENSCJAG00000009268)	ENSCJAG00000081095
Tarsier	MODERN SPECIES	3109																RAB2A (ENSTSYG00000030301) #22
Strepsirrhini	ANCESTRAL SPECIES	15	ENSGT00390000003248.a.a.a.a.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Lemuriformes	ANCESTRAL SPECIES	24	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Mouse lemur	MODERN SPECIES	31	XKR4 (ENSMICG00000004668)	ENSMICG00000031576	SOX17 (ENSMICG00000046540)	MRPL15 (ENSMICG00000009779)	LYPLA1 (ENSMICG00000015545)	TCEA1 (ENSMICG00000029278)	RGS20 (ENSMICG00000015672)	ATP6V1H (ENSMICG00000015657)	ENSMICG00000044219	OPRK1 (ENSMICG00000043008)	ENSMICG00000003968 #18	NSMAF (ENSMICG00000003974) #19	TOX (ENSMICG00000032215) #20	CA8 (ENSMICG00000047348) #21	ENSMICG00000034084	RAB2A (ENSMICG00000034540) #22	CHD7 (ENSMICG00000002430) #23	CLVS1 (ENSMICG00000006968) #24	ASPH (ENSMICG00000006413) #25	NKAIN3 (ENSMICG00000006325)	ENSMICG00000045812	TTPA (ENSMICG00000044191)	YTHDF3 (ENSMICG00000036869)	BHLHE22 (ENSMICG00000036458)	CYP7B1 (ENSMICG00000002968) ##17	ARMC1 (ENSMICG00000044923)	MTFR1 (ENSMICG00000012792)	ENSMICG00000027344	PDE7A (ENSMICG00000012802)	DNAJC5B (ENSMICG00000043410)	TRIM55 (ENSMICG00000012826)
Lemuriformes_a	ANCESTRAL SPECIES	107	ENSGT00390000003248.a.a.a.a.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.c #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.f #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25
Coquerels sifaka	MODERN SPECIES	853	LYN (ENSPCOG00000024655)	ENSPCOG00000019798 ##7	CHCHD7 (ENSPCOG00000018176) #10	SDR16C5 (ENSPCOG00000024871) #11	ENSPCOG00000000959 #12	PENK (ENSPCOG00000022168) #13	BPNT2 (ENSPCOG00000028648) #14	FAM110B (ENSPCOG00000026950) #15	UBXN2B (ENSPCOG00000025222) #16	CYP7A1 (ENSPCOG00000025220) #17	ENSPCOG00000026207 #18	NSMAF (ENSPCOG00000020110) #19	TOX (ENSPCOG00000016690) #20	ENSPCOG00000020627	CA8 (ENSPCOG00000028332) #21	RAB2A (ENSPCOG00000020717) #22	CHD7 (ENSPCOG00000013850) #23	CLVS1 (ENSPCOG00000014461) #24	ASPH (ENSPCOG00000022974) #25
Greater bamboo lemur	MODERN SPECIES	663															ENSPSMG00000022896	RAB2A (ENSPSMG00000022892) #22	CHD7 (ENSPSMG00000022867) #23	CLVS1 (ENSPSMG00000022800) #24	ASPH (ENSPSMG00000022706) #25
Bushbaby	MODERN SPECIES	349														CA8 (ENSOGAG00000001096) #21	ENSOGAG00000001097	RAB2A (ENSOGAG00000011201) #22	CHD7 (ENSOGAG00000013905) #23	CLVS1 (ENSOGAG00000007028) #24	ASPH (ENSOGAG00000007030) #25
Euarchontoglires	DUPLICATION
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Mus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Steppe mouse	MODERN SPECIES	3268		ENSMSIG00000004660	Amy1 (ENSMSIG00000004684)	Rnpc3 (ENSMSIG00000004723)	Col11a1 (ENSMSIG00000004832)	ENSMSIG00000004970	Olfm3 (ENSMSIG00000004986)	S1pr1 (ENSMSIG00000005050)	ENSMSIG00000005056	Dph5 (ENSMSIG00000005061)	Slc30a7 (ENSMSIG00000005095)	Extl2 (ENSMSIG00000005127)	Vcam1 (ENSMSIG00000005169)	Gpr88 (ENSMSIG00000005216)	Cdc14a (ENSMSIG00000005239)	ENSMSIG00000005433 ##22	ENSMSIG00000005461	ENSMSIG00000005524	Dbt (ENSMSIG00000005569)	Lrrc39 (ENSMSIG00000005604)	Trmt13 (ENSMSIG00000005639)	Sass6 (ENSMSIG00000005689)	Mfsd14a (ENSMSIG00000005946)	Slc35a3 (ENSMSIG00000006013)	Agl (ENSMSIG00000006035)	Frrs1 (ENSMSIG00000006123)	Palmd (ENSMSIG00000006299)	ENSMSIG00000006393	ENSMSIG00000006399
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Hystricomorpha_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Hystricomorpha_b	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Degu	MODERN SPECIES	61	GALM (ENSODEG00000009740)	ENSODEG00000011016	SRSF7 (ENSODEG00000010029)	GEMIN6 (ENSODEG00000011245)	DHX57 (ENSODEG00000011626)	ENSODEG00000009626	ARHGEF33 (ENSODEG00000010871)	ENSODEG00000011783	SOS1 (ENSODEG00000012567)	CDKL4 (ENSODEG00000010265)	MAP4K3 (ENSODEG00000011426)	TMEM178A (ENSODEG00000010204)	ENSODEG00000010561	ENSODEG00000019855	SLC8A1 (ENSODEG00000010025)	ENSODEG00000009978 ##22	ENSODEG00000019775	ENSODEG00000010136	ENSODEG00000019723	ENSODEG00000010490	PKDCC (ENSODEG00000014354)	EML4 (ENSODEG00000011507)	COX7A2L (ENSODEG00000011433)	ENSODEG00000011166	KCNG3 (ENSODEG00000014536)	ENSODEG00000012097	ENSODEG00000011091	ENSODEG00000019803	HAAO (ENSODEG00000010886)	ENSODEG00000012111	ENSODEG00000010547
Sciuridae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Marmotini	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Alpin marmot	MODERN SPECIES	16	TRPA1 (ENSMMMG00000004948)	MSC (ENSMMMG00000004901)	EYA1 (ENSMMMG00000004783)	XKR9 (ENSMMMG00000004758)	LACTB2 (ENSMMMG00000004742)	TRAM1 (ENSMMMG00000004176)	ENSMMMG00000004157	ENSMMMG00000004137	NCOA2 (ENSMMMG00000003994)	PRDM14 (ENSMMMG00000003951)	SLCO5A1 (ENSMMMG00000003820)	SDCBP (ENSMMMG00000003758) #18	NSMAF (ENSMMMG00000003716) #19	TOX (ENSMMMG00000003707) #20	CA8 (ENSMMMG00000003649) #21	ENSMMMG00000003620 ##22	ENSMMMG00000003618 #22	CHD7 (ENSMMMG00000003455) #23	CLVS1 (ENSMMMG00000003433) #24	ASPH (ENSMMMG00000003021) #25	NKAIN3 (ENSMMMG00000002955)	GGH (ENSMMMG00000002919)	TTPA (ENSMMMG00000002905)	YTHDF3 (ENSMMMG00000002881)	ENSMMMG00000002871	CYP7B1 (ENSMMMG00000002861) ##17	ENSMMMG00000002852	ENSMMMG00000002848	ARMC1 (ENSMMMG00000002830)	MTFR1 (ENSMMMG00000002790)	PDE7A (ENSMMMG00000002696)
Primates	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Strepsirrhini	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.a ##22
Greater bamboo lemur	MODERN SPECIES	1608																ENSPSMG00000020157 ##22	ENSPSMG00000020155	ENSPSMG00000020152
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Murinae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Mus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Mus_A	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.e.b ##22
Steppe mouse	MODERN SPECIES	3419								Lcorl (ENSMSIG00000029653)	Ncapg (ENSMSIG00000029676)	Fam184b (ENSMSIG00000029687)	Med28 (ENSMSIG00000029693)	Lap3 (ENSMSIG00000029697)	Clrn2 (ENSMSIG00000029703)	Qdpr (ENSMSIG00000029706)	Ldb2 (ENSMSIG00000029731)	ENSMSIG00000029753 ##22	Tapt1 (ENSMSIG00000029756)	Prom1 (ENSMSIG00000029762)	Fgfbp1 (ENSMSIG00000030095)	Cd38 (ENSMSIG00000030098)	Bst1 (ENSMSIG00000030100)	Fbxl5 (ENSMSIG00000030102)	Cc2d2a (ENSMSIG00000030112)	C1qtnf7 (ENSMSIG00000030162)	Cpeb2 (ENSMSIG00000030167)	Bod1l (ENSMSIG00000030207)	Nkx3-2 (ENSMSIG00000030244)	Rab28 (ENSMSIG00000030249)	ENSMSIG00000030260
Laurasiatheria	ANCESTRAL SPECIES	18	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Laurasiatheria_a	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Laurasiatheria_b	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Laurasiatheria_c	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00990000212811	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Equus	ANCESTRAL SPECIES	14	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00990000212811	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Horse	MODERN SPECIES	30	SDR16C5 (ENSECAG00000008479) #11	ENSECAG00000006420 #12	PENK (ENSECAG00000024110) #13	ENSECAG00000056448	BPNT2 (ENSECAG00000020044) #14	ENSECAG00000028112	FAM110B (ENSECAG00000004777) #15	UBXN2B (ENSECAG00000017075) #16	CYP7A1 (ENSECAG00000012946) #17	SDCBP (ENSECAG00000015053) #18	NSMAF (ENSECAG00000000565) #19	TOX (ENSECAG00000022430) #20	ENSECAG00000040466	CA8 (ENSECAG00000018004) #21	ENSECAG00000056437	RAB2A (ENSECAG00000012124) #22	CHD7 (ENSECAG00000001445) #23	CLVS1 (ENSECAG00000000059) #24	ASPH (ENSECAG00000021447) #25	NKAIN3 (ENSECAG00000020663)	GGH (ENSECAG00000014903)	TTPA (ENSECAG00000045564)	YTHDF3 (ENSECAG00000011093)	BHLHE22 (ENSECAG00000039010)	CYP7B1 (ENSECAG00000007540) ##17	ENSECAG00000054918	ARMC1 (ENSECAG00000022099)	MTFR1 (ENSECAG00000018466)	ENSECAG00000048660	PDE7A (ENSECAG00000017565)	DNAJC5B (ENSECAG00000016455)
Donkey	MODERN SPECIES	3	PLAG1 (ENSEASG00005016361) #9	CHCHD7 (ENSEASG00005016359) #10	SDR16C5 (ENSEASG00005016356) #11	ENSEASG00005016354 #12	PENK (ENSEASG00005030368) #13	BPNT2 (ENSEASG00005016346) #14	ENSEASG00005030180	FAM110B (ENSEASG00005024095) #15	UBXN2B (ENSEASG00005016334) #16	CYP7A1 (ENSEASG00005016330) #17	SDCBP (ENSEASG00005016275) #18	NSMAF (ENSEASG00005016270) #19	TOX (ENSEASG00005016265) #20	ENSEASG00005016264	CA8 (ENSEASG00005016262) #21	RAB2A (ENSEASG00005016261) #22	ENSEASG00005025791	CHD7 (ENSEASG00005016258) #23	CLVS1 (ENSEASG00005016256) #24	ASPH (ENSEASG00005029180) #25	NKAIN3 (ENSEASG00005016237)	GGH (ENSEASG00005016231)	TTPA (ENSEASG00005031026)	YTHDF3 (ENSEASG00005016224)	ENSEASG00005026428	ENSEASG00005026720	CYP7B1 (ENSEASG00005033874) ##17	ARMC1 (ENSEASG00005001743)	MTFR1 (ENSEASG00005001735)	PDE7A (ENSEASG00005001725)	DNAJC5B (ENSEASG00005001709)
Chiroptera	ANCESTRAL SPECIES	42	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a.c	ENSGT00940000154473.a
Megabat	MODERN SPECIES	6144																RAB2A (ENSPVAG00000006906) #22
Microchiroptera	ANCESTRAL SPECIES	41	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a.c	ENSGT00940000154473.a
Microbat	MODERN SPECIES	954	RPS20 (ENSMLUG00000029059) #7	MOS (ENSMLUG00000014866) #8	PLAG1 (ENSMLUG00000022542) #9	CHCHD7 (ENSMLUG00000002085) #10	SDR16C5 (ENSMLUG00000002087) #11	PENK (ENSMLUG00000002095) #13	BPNT2 (ENSMLUG00000030180) #14	FAM110B (ENSMLUG00000011997) #15	UBXN2B (ENSMLUG00000022243) #16	CYP7A1 (ENSMLUG00000004797) #17	ENSMLUG00000004807 #18	NSMAF (ENSMLUG00000004814) #19	TOX (ENSMLUG00000001247) #20	ENSMLUG00000001254	CA8 (ENSMLUG00000009024) #21	RAB2A (ENSMLUG00000002855) #22	ENSMLUG00000030659	CHD7 (ENSMLUG00000015266) #23	CLVS1 (ENSMLUG00000015754) #24	ASPH (ENSMLUG00000015756) #25	ENSMLUG00000027498
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	6	ENSRFEG00010010619	ENSRFEG00010010681	ENSRFEG00010010743	ENSRFEG00010010847	ENSRFEG00010010936	ENSRFEG00010010964	TTYH1 (ENSRFEG00010011026)	LENG8 (ENSRFEG00010011172)	LENG9 (ENSRFEG00010011236)	CDC42EP5 (ENSRFEG00010011252)	ENSRFEG00010011275	ENSRFEG00010011766	FCAR (ENSRFEG00010012892)	NCR1 (ENSRFEG00010013100)	ENSRFEG00010013450	ENSRFEG00010014407 #22	ENSRFEG00010014486	NLRP2 (ENSRFEG00010014517)	ENSRFEG00010015159	RDH13 (ENSRFEG00010015233)	ENSRFEG00010015343	EPS8L1 (ENSRFEG00010015399)	PPP1R12C (ENSRFEG00010015728)	TNNT1 (ENSRFEG00010015784)	TNNI3 (ENSRFEG00010016024)	DNAAF3 (ENSRFEG00010016317)	SYT5 (ENSRFEG00010017140)	PTPRH (ENSRFEG00010017321)	TMEM86B (ENSRFEG00010017826)	PPP6R1 (ENSRFEG00010017867)	HSPBP1 (ENSRFEG00010017938)
Greater horseshoe bat	MODERN SPECIES	5	PLAG1 (ENSRFEG00010008003) #9	CHCHD7 (ENSRFEG00010007883) #10	SDR16C5 (ENSRFEG00010007843) #11	ENSRFEG00010007826 #12	PENK (ENSRFEG00010007792) #13	BPNT2 (ENSRFEG00010007765) #14	FAM110B (ENSRFEG00010007745) #15	ENSRFEG00010007735	UBXN2B (ENSRFEG00010007689) #16	CYP7A1 (ENSRFEG00010007643) #17	SDCBP (ENSRFEG00010007422) #18	NSMAF (ENSRFEG00010007360) #19	TOX (ENSRFEG00010007308) #20	ENSRFEG00010007288	CA8 (ENSRFEG00010007240) #21	ENSRFEG00010007105 #22	ENSRFEG00010007072	CHD7 (ENSRFEG00010006927) #23	ENSRFEG00010006898	CLVS1 (ENSRFEG00010006823) #24	ASPH (ENSRFEG00010006293) #25	NKAIN3 (ENSRFEG00010006061)	GGH (ENSRFEG00010006024)	TTPA (ENSRFEG00010005978)	YTHDF3 (ENSRFEG00010005932)	ENSRFEG00010005859	ENSRFEG00010005831	BHLHE22 (ENSRFEG00010005813)	CYP7B1 (ENSRFEG00010005796) ##17	ARMC1 (ENSRFEG00010005774)	MTFR1 (ENSRFEG00010005711)
Carnivora	ANCESTRAL SPECIES	22	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Felidae	ANCESTRAL SPECIES	22	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Cat	MODERN SPECIES	249	RPS20 (ENSFCAG00000029233) #7	MOS (ENSFCAG00000003663) #8	PLAG1 (ENSFCAG00000014980) #9	CHCHD7 (ENSFCAG00000032943) #10	SDR16C5 (ENSFCAG00000014982) #11	PENK (ENSFCAG00000046182) #13	ENSFCAG00000026194	BPNT2 (ENSFCAG00000040896) #14	FAM110B (ENSFCAG00000042816) #15	UBXN2B (ENSFCAG00000022163) #16	CYP7A1 (ENSFCAG00000008003) #17	SDCBP (ENSFCAG00000026811) #18	NSMAF (ENSFCAG00000008007) #19	TOX (ENSFCAG00000005993) #20	CA8 (ENSFCAG00000010244) #21	RAB2A (ENSFCAG00000024352) #22	CHD7 (ENSFCAG00000003849) #23	CLVS1 (ENSFCAG00000010446) #24	ASPH (ENSFCAG00000046737) #25	NKAIN3 (ENSFCAG00000007885)	GGH (ENSFCAG00000012709)	YTHDF3 (ENSFCAG00000025314)	ENSFCAG00000039101	ENSFCAG00000050327	ENSFCAG00000032717	BHLHE22 (ENSFCAG00000046121)	CYP7B1 (ENSFCAG00000010211) ##17	ARMC1 (ENSFCAG00000034559)	MTFR1 (ENSFCAG00000030908)	PDE7A (ENSFCAG00000002055)	DNAJC5B (ENSFCAG00000031311)
Panthera	ANCESTRAL SPECIES	16	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Tiger	MODERN SPECIES	216															CA8 (ENSPTIG00000007092) #21	RAB2A (ENSPTIG00000009758) #22	CHD7 (ENSPTIG00000011702) #23	CLVS1 (ENSPTIG00000019123) #24	ASPH (ENSPTIG00000019633) #25	GGH (ENSPTIG00000021128)	TTPA (ENSPTIG00000021289)	YTHDF3 (ENSPTIG00000021537)	ENSPTIG00000005218	ENSPTIG00000005746	CYP7B1 (ENSPTIG00000006106) ##17	ARMC1 (ENSPTIG00000006567)	MTFR1 (ENSPTIG00000008089)	PDE7A (ENSPTIG00000009496)	DNAJC5B (ENSPTIG00000012379)	TRIM55 (ENSPTIG00000013229)	ADHFE1 (ENSPTIG00000015037)
Panthera_a	ANCESTRAL SPECIES	16	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
leopard	MODERN SPECIES	84	RPS20 (ENSPPRG00000001787) #7	MOS (ENSPPRG00000014813) #8	PLAG1 (ENSPPRG00000002026) #9	CHCHD7 (ENSPPRG00000002603) #10	SDR16C5 (ENSPPRG00000003488) #11	PENK (ENSPPRG00000004334) #13	BPNT2 (ENSPPRG00000004394) #14	ENSPPRG00000014945 #15	ENSPPRG00000014954 #15	UBXN2B (ENSPPRG00000004977) #16	CYP7A1 (ENSPPRG00000005172) #17	SDCBP (ENSPPRG00000006324) #18	NSMAF (ENSPPRG00000009327) #19	TOX (ENSPPRG00000009925) #20	CA8 (ENSPPRG00000012015) #21	RAB2A (ENSPPRG00000012945) #22	CHD7 (ENSPPRG00000022248) #23	CLVS1 (ENSPPRG00000000763) #24	ENSPPRG00000001392	ENSPPRG00000002138	NKAIN3 (ENSPPRG00000002527)	GGH (ENSPPRG00000002896)	TTPA (ENSPPRG00000002962)	YTHDF3 (ENSPPRG00000004665)	ENSPPRG00000015827	ENSPPRG00000015847	ENSPPRG00000005195	BHLHE22 (ENSPPRG00000005341)	CYP7B1 (ENSPPRG00000005718) ##17	ARMC1 (ENSPPRG00000006822)	MTFR1 (ENSPPRG00000007511)
lion	MODERN SPECIES	509	LYN (ENSPLOG00000000327)	ENSPLOG00000000280 #7	MOS (ENSPLOG00000000254) #8	PLAG1 (ENSPLOG00000000246) #9	CHCHD7 (ENSPLOG00000000226) #10	SDR16C5 (ENSPLOG00000000199) #11	PENK (ENSPLOG00000000187) #13	BPNT2 (ENSPLOG00000000177) #14	FAM110B (ENSPLOG00000000166) #15	UBXN2B (ENSPLOG00000000158) #16	CYP7A1 (ENSPLOG00000000142) #17	SDCBP (ENSPLOG00000000123) #18	NSMAF (ENSPLOG00000000085) #19	TOX (ENSPLOG00000000065) #20	CA8 (ENSPLOG00000000055) #21	RAB2A (ENSPLOG00000000020) #22	CHD7 (ENSPLOG00000008970) #23	CLVS1 (ENSPLOG00000008886) #24	ASPH (ENSPLOG00000008617) #25	NKAIN3 (ENSPLOG00000008478)	GGH (ENSPLOG00000008441)	TTPA (ENSPLOG00000008405)	YTHDF3 (ENSPLOG00000008320)	ENSPLOG00000008263	BHLHE22 (ENSPLOG00000008231)	CYP7B1 (ENSPLOG00000008188) ##17	ARMC1 (ENSPLOG00000008154)	MTFR1 (ENSPLOG00000008073)	PDE7A (ENSPLOG00000007872)	DNAJC5B (ENSPLOG00000007818)	TRIM55 (ENSPLOG00000007639)
Caniformia	ANCESTRAL SPECIES	23	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Caniformia_b	ANCESTRAL SPECIES	22	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00390000012818.o.a.a.a.a	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Ursidae	ANCESTRAL SPECIES	26	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000171038	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00390000005213
Ursus	ANCESTRAL SPECIES	110	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000171038.c	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT01030000240256	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a	ENSGT00390000005213
American black bear	MODERN SPECIES	2568																RAB2A (ENSUAMG00000018125) #22
Polar bear	MODERN SPECIES	296	ENSUMAG00000009788 #10	ENSUMAG00000009789	SDR16C5 (ENSUMAG00000009791) #11	PENK (ENSUMAG00000009792) #13	ENSUMAG00000009795 #14	ENSUMAG00000009802	FAM110B (ENSUMAG00000009815) #15	UBXN2B (ENSUMAG00000009820) #16	CYP7A1 (ENSUMAG00000009825) #17	ENSUMAG00000009836	SDCBP (ENSUMAG00000009840) #18	NSMAF (ENSUMAG00000009846) #19	ENSUMAG00000009852	TOX (ENSUMAG00000009857) #20	CA8 (ENSUMAG00000009870) #21	RAB2A (ENSUMAG00000009877) #22	CHD7 (ENSUMAG00000010436) #23	CLVS1 (ENSUMAG00000014042) #24	ASPH (ENSUMAG00000014054) #25	NKAIN3 (ENSUMAG00000014091)	GGH (ENSUMAG00000014093)	TTPA (ENSUMAG00000014098)	YTHDF3 (ENSUMAG00000014104)	CYP7B1 (ENSUMAG00000014112) ##17	ARMC1 (ENSUMAG00000014116)	ENSUMAG00000014117	MTFR1 (ENSUMAG00000014119)	PDE7A (ENSUMAG00000014127)	DNAJC5B (ENSUMAG00000014199)	TRIM55 (ENSUMAG00000014201)	ADHFE1 (ENSUMAG00000014211)
Giant Panda	MODERN SPECIES	19	RPS20 (ENSAMEG00000006087) #7	MOS (ENSAMEG00000019444) #8	PLAG1 (ENSAMEG00000006089) #9	CHCHD7 (ENSAMEG00000006095) #10	SDR16C5 (ENSAMEG00000006100) #11	PENK (ENSAMEG00000006117) #13	BPNT2 (ENSAMEG00000006121) #14	FAM110B (ENSAMEG00000019450) #15	UBXN2B (ENSAMEG00000006131) #16	CYP7A1 (ENSAMEG00000006149) #17	ENSAMEG00000024357	SDCBP (ENSAMEG00000006161) #18	NSMAF (ENSAMEG00000006217) #19	TOX (ENSAMEG00000005857) #20	CA8 (ENSAMEG00000005842) #21	RAB2A (ENSAMEG00000005810) #22	CHD7 (ENSAMEG00000005699) #23	CLVS1 (ENSAMEG00000005687) #24	ASPH (ENSAMEG00000005680) #25	ENSAMEG00000029572	NKAIN3 (ENSAMEG00000015503)	GGH (ENSAMEG00000018121)	TTPA (ENSAMEG00000024127)	YTHDF3 (ENSAMEG00000018113)	ENSAMEG00000024582	CYP7B1 (ENSAMEG00000012256) ##17	ENSAMEG00000025290	ARMC1 (ENSAMEG00000012275)	MTFR1 (ENSAMEG00000012281)	PDE7A (ENSAMEG00000012296)	DNAJC5B (ENSAMEG00000012328)
Mustelinae	ANCESTRAL SPECIES	134	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.`b.b.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25
American mink	MODERN SPECIES	261								ENSNVIG00000002241	UBX2B (ENSNVIG00000002249) #16	CYP7A1 (ENSNVIG00000002275) #17	ENSNVIG00000002288	ENSNVIG00000002303 #18	NSMAF (ENSNVIG00000002488) #19	TOX (ENSNVIG00000003701) #20	CA8 (ENSNVIG00000003720) #21	RAB2A (ENSNVIG00000003752) #22	CHD7 (ENSNVIG00000003816) #23
Ferret	MODERN SPECIES	435															CA8 (ENSMPUG00000002375) #21	RAB2A (ENSMPUG00000002345) #22	CHD7 (ENSMPUG00000002338) #23	ENSMPUG00000002337	CLVS1 (ENSMPUG00000002335) #24	ASPH (ENSMPUG00000002330) #25
Canidae	ANCESTRAL SPECIES	42	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.u.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b.h	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Canis_lupus	DUPLICATION
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	37	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00390000003255.d	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00390000009724.l.mb.a.a.b	ENSGT00940000154502.u.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT01090000260040.a.a.b.dc.a	ENSGT00940000153886.a.b.i.a #22	ENSGT00940000153649.A #23	ENSGT00390000008624.i	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b.h	ENSGT00940000157658	ENSGT00940000159294
Dog	MODERN SPECIES	21	PLAG1 (ENSCAFG00845027166) #9	CHCHD7 (ENSCAFG00845027220) #10	SDR16C5 (ENSCAFG00845027287) #11	ENSCAFG00845027376	ENSCAFG00845027417 #13	IMPAD1 (ENSCAFG00845027460) #14	FAM110B (ENSCAFG00845027603) #15	UBXN2B (ENSCAFG00845027636) #16	CYP7A1 (ENSCAFG00845027730) #17	ENSCAFG00845027903	SDCBP (ENSCAFG00845027966) #18	NSMAF (ENSCAFG00845028261) #19	TOX (ENSCAFG00845028387) #20	CA8 (ENSCAFG00845028447) #21	ENSCAFG00845028495	RAB2A (ENSCAFG00845028560) #22	CHD7 (ENSCAFG00845028771) #23	ENSCAFG00845029025	CLVS1 (ENSCAFG00845029038) #24	ASPH (ENSCAFG00845029184) #25	NKAIN3 (ENSCAFG00845029711)	GGH (ENSCAFG00845029791)	TTPA (ENSCAFG00845029838)	YTHDF3 (ENSCAFG00845029858)	ENSCAFG00845029970	BHLHE22 (ENSCAFG00845029985)	CYP7B1 (ENSCAFG00845017776) ##17	ARMC1 (ENSCAFG00845017839)	MTFR1 (ENSCAFG00845018020)	PDE7A (ENSCAFG00845018315)	DNAJC5B (ENSCAFG00845018466)
Dingo	MODERN SPECIES	30	CHCHD7 (ENSCAFG00020015527) #10	SDR16C5 (ENSCAFG00020015530) #11	ENSCAFG00020015532	PENK (ENSCAFG00020015536) #13	BPNT2 (ENSCAFG00020015539) #14	ENSCAFG00020015542	FAM110B (ENSCAFG00020015547) #15	UBXN2B (ENSCAFG00020015548) #16	CYP7A1 (ENSCAFG00020015551) #17	ENSCAFG00020015555	ENSCAFG00020015560 #18	NSMAF (ENSCAFG00020015657) #19	TOX (ENSCAFG00020015841) #20	CA8 (ENSCAFG00020015844) #21	ENSCAFG00020015847	ENSCAFG00020015849 #22	CHD7 (ENSCAFG00020015856) #23	ENSCAFG00020015876	CLVS1 (ENSCAFG00020015881) #24	ASPH (ENSCAFG00020015893) #25	NKAIN3 (ENSCAFG00020015973)	GGH (ENSCAFG00020015977)	TTPA (ENSCAFG00020015981)	YTHDF3 (ENSCAFG00020015995)	ENSCAFG00020015998	BHLHE22 (ENSCAFG00020016004)	CYP7B1 (ENSCAFG00020016006) ##17	ARMC1 (ENSCAFG00020016019)	ENSCAFG00020016022	MTFR1 (ENSCAFG00020016024)	PDE7A (ENSCAFG00020016027)
Canis_lupus	ANCESTRAL SPECIES		ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.g.a	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a.e	ENSGT00940000153886.a.b.i.b #22	ENSGT00940000162730	ENSGT00940000161258	ENSGT00940000160008	ENSGT01000000214440.A.a.b.b	ENSGT00530000063085.A.b	ENSGT00390000000950.c.b.n	ENSGT00390000001376.cb.b	ENSGT00390000008294.e.a.b.e	ENSGT00940000155019.a.b	ENSGT00390000000724.c.b	ENSGT00940000156554	ENSGT00390000002368.u	ENSGT01030000234510.a.a.a.a.a.a	ENSGT01030000234510.a.a.b	ENSGT00940000161642
Dog	MODERN SPECIES		AHI1 (ENSCAFG00845005265)	MYB (ENSCAFG00845005160)	HBS1L (ENSCAFG00845005059)	ALDH8A1 (ENSCAFG00845005024)	SGK1 (ENSCAFG00845004995)	SLC2A12 (ENSCAFG00845004951)	ENSCAFG00845004931	TBPL1 (ENSCAFG00845004926)	TCF21 (ENSCAFG00845004920)	EYA4 (ENSCAFG00845004896)	RPS12 (ENSCAFG00845004862)	SLC18B1 (ENSCAFG00845004799)	ENSCAFG00845004781	ENSCAFG00845004762	VNN1 (ENSCAFG00845004723)	ENSCAFG00845004717 #22	ENSCAFG00845004703	TAAR4 (ENSCAFG00845004684)	TAAR5 (ENSCAFG00845004676)	ENSCAFG00845004663	STX7 (ENSCAFG00845004632)	MOXD1 (ENSCAFG00845004576)	ENSCAFG00845004554	ENSCAFG00845004539	CCN2 (ENSCAFG00845004492)	ENSCAFG00845004478	LDLRAD4 (ENSCAFG00845004440)	FAM210A (ENSCAFG00845003487)	RNMT (ENSCAFG00845003471)	MC5R (ENSCAFG00845003464)	MC2R (ENSCAFG00845003453)
Dingo	MODERN SPECIES	125	AHI1 (ENSCAFG00020022540)	MYB (ENSCAFG00020021933)	HBS1L (ENSCAFG00020021904)	ALDH8A1 (ENSCAFG00020021903)	SGK1 (ENSCAFG00020021876)	ENSCAFG00020021874	SLC2A12 (ENSCAFG00020021868)	ENSCAFG00020021865	TCF21 (ENSCAFG00020021862)	EYA4 (ENSCAFG00020021829)	ENSCAFG00020021815	RPS12 (ENSCAFG00020021808)	SLC18B1 (ENSCAFG00020021806)	ENSCAFG00020021802	ENSCAFG00020021800	ENSCAFG00020021797 #22	ENSCAFG00020021795	TAAR5 (ENSCAFG00020021793)	STX7 (ENSCAFG00020021791)	MOXD1 (ENSCAFG00020021762)	ENSCAFG00020021755	ENSCAFG00020021753	CCN2 (ENSCAFG00020021747)	LDLRAD4 (ENSCAFG00020021740)	FAM210A (ENSCAFG00020021732)	ENSCAFG00020021706	MC5R (ENSCAFG00020021703)	MC2R (ENSCAFG00020021702)	MRO (ENSCAFG00020021690)	ME2 (ENSCAFG00020021686)	ELAC1 (ENSCAFG00020021678)
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.j #22
Dog	MODERN SPECIES	144	LANCL3 (ENSCAFG00845023634)	XK (ENSCAFG00845023672)	CYBB (ENSCAFG00845023727)	DYNLT3 (ENSCAFG00845023973)	SYTL5 (ENSCAFG00845024105)	ENSCAFG00845024670	RPGR (ENSCAFG00845024867)	OTC (ENSCAFG00845025700)	ENSCAFG00845025837	TSPAN7 (ENSCAFG00845025872)	MID1IP1 (ENSCAFG00845025983)	BCOR (ENSCAFG00845026046)	ENSCAFG00845026522	ATP6AP2 (ENSCAFG00845026626)	ENSCAFG00845026922	ENSCAFG00845026994 #22	CXHXorf38 (ENSCAFG00845027009)	MED14 (ENSCAFG00845027192)	DDX3X (ENSCAFG00845024733)	ENSCAFG00845025399	NYX (ENSCAFG00845025424)	CASK (ENSCAFG00845025610)	GPR82 (ENSCAFG00845026872)	PPP1R2C (ENSCAFG00845026949)	ENSCAFG00845027065	MAOA (ENSCAFG00845027245)	MAOB (ENSCAFG00845027440)	ENSCAFG00845027745	EFHC2 (ENSCAFG00845027895)	ENSCAFG00845028141	FUNDC1 (ENSCAFG00845028259)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	3	MOS (ENSVVUG00000017842) #8	PLAG1 (ENSVVUG00000017846) #9	CHCHD7 (ENSVVUG00000017849) #10	SDR16C5 (ENSVVUG00000017852) #11	PENK (ENSVVUG00000017856) #13	BPNT2 (ENSVVUG00000017862) #14	ENSVVUG00000017870	UBXN2B (ENSVVUG00000017875) #16	CYP7A1 (ENSVVUG00000017882) #17	ENSVVUG00000017905	SDCBP (ENSVVUG00000017912) #18	NSMAF (ENSVVUG00000017979) #19	TOX (ENSVVUG00000018003) #20	CA8 (ENSVVUG00000018041) #21	ENSVVUG00000018049	RAB2A (ENSVVUG00000018053) #22	CHD7 (ENSVVUG00000018063) #23	CLVS1 (ENSVVUG00000018126) #24	ASPH (ENSVVUG00000018144) #25	ENSVVUG00000018274	ENSVVUG00000018297	NKAIN3 (ENSVVUG00000018339)	GGH (ENSVVUG00000018346)	TTPA (ENSVVUG00000018379)	YTHDF3 (ENSVVUG00000018384)	ENSVVUG00000018389	CYP7B1 (ENSVVUG00000018408) ##17	ARMC1 (ENSVVUG00000018413)	MTFR1 (ENSVVUG00000018419)	PDE7A (ENSVVUG00000018435)	DNAJC5B (ENSVVUG00000018444)
Red fox	MODERN SPECIES	90	XK (ENSVVUG00000011101)	CYBB (ENSVVUG00000011104)	DYNLT3 (ENSVVUG00000011181)	SYTL5 (ENSVVUG00000011212)	ENSVVUG00000011248	SRPX (ENSVVUG00000011256)	ENSVVUG00000011276	OTC (ENSVVUG00000011334)	ENSVVUG00000011344	TSPAN7 (ENSVVUG00000011357)	MID1IP1 (ENSVVUG00000011361)	BCOR (ENSVVUG00000011387)	ENSVVUG00000011413	ATP6AP2 (ENSVVUG00000011420)	MPC1L (ENSVVUG00000011425)	ENSVVUG00000011426 #22	CUNHXorf38 (ENSVVUG00000011436)	MED14 (ENSVVUG00000011442)	ENSVVUG00000011458	USP9X (ENSVVUG00000011477)	DDX3X (ENSVVUG00000011589)	NYX (ENSVVUG00000011642)	CASK (ENSVVUG00000011654)	GPR82 (ENSVVUG00000011730)	ENSVVUG00000011751	ENSVVUG00000011758	ENSVVUG00000011769	MAOB (ENSVVUG00000011781)	NDP (ENSVVUG00000011804)	EFHC2 (ENSVVUG00000011810)	ENSVVUG00000011845
Artiodactyla	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Artiodactyla_a	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Camelidae	ANCESTRAL SPECIES	77	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Arabian camel	MODERN SPECIES	21	RPS20 (ENSCDRG00005020230) #7	MOS (ENSCDRG00005020244) #8	PLAG1 (ENSCDRG00005020252) #9	CHCHD7 (ENSCDRG00005020260) #10	SDR16C5 (ENSCDRG00005020318) #11	ENSCDRG00005020328 #12	PENK (ENSCDRG00005020332) #13	ENSCDRG00005020337 #14	FAM110B (ENSCDRG00005020341) #15	UBXN2B (ENSCDRG00005020346) #16	CYP7A1 (ENSCDRG00005020352) #17	SDCBP (ENSCDRG00005020366) #18	NSMAF (ENSCDRG00005020419) #19	TOX (ENSCDRG00005020469) #20	CA8 (ENSCDRG00005020483) #21	RAB2A (ENSCDRG00005020500) #22	CHD7 (ENSCDRG00005020522) #23	CLVS1 (ENSCDRG00005020550) #24	ASPH (ENSCDRG00005020568) #25	NKAIN3 (ENSCDRG00005020651)	GGH (ENSCDRG00005020657)	TTPA (ENSCDRG00005020665)	ENSCDRG00005020671	YTHDF3 (ENSCDRG00005020678)	ENSCDRG00005020699	ENSCDRG00005020705	CYP7B1 (ENSCDRG00005020713) ##17	ENSCDRG00005020716	ARMC1 (ENSCDRG00005020720)	MTFR1 (ENSCDRG00005020730)	PDE7A (ENSCDRG00005020748)
Alpaca	MODERN SPECIES	2224															CA8 (ENSVPAG00000009097) #21	RAB2A (ENSVPAG00000009098) #22
Artiodactyla_b	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Pecora	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Yarkand deer	MODERN SPECIES	13	PLAG1 (ENSCHYG00000024189) #9	CHCHD7 (ENSCHYG00000024223) #10	ENSCHYG00000024371 #12	PENK (ENSCHYG00000024468) #13	BPNT2 (ENSCHYG00000024500) #14	ENSCHYG00000024535	ENSCHYG00000024542	FAM110B (ENSCHYG00000024557) #15	UBXN2B (ENSCHYG00000024580) #16	CYP7A1 (ENSCHYG00000024626) #17	SDCBP (ENSCHYG00000024674) #18	NSMAF (ENSCHYG00000024822) #19	TOX (ENSCHYG00000025044) #20	CA8 (ENSCHYG00000025104) #21	ENSCHYG00000025130	RAB2A (ENSCHYG00000025151) #22	CHD7 (ENSCHYG00000025292) #23	CLVS1 (ENSCHYG00000025501) #24	ASPH (ENSCHYG00000025689) #25	NKAIN3 (ENSCHYG00000026392)	GGH (ENSCHYG00000026422)	TTPA (ENSCHYG00000026444)	ENSCHYG00000026461	ENSCHYG00000026479	ENSCHYG00000026491	ENSCHYG00000026500	CYP7B1 (ENSCHYG00000026509) ##17	ENSCHYG00000026517	ARMC1 (ENSCHYG00000026528)	ENSCHYG00000026546	MTFR1 (ENSCHYG00000026556)
Percora_a	ANCESTRAL SPECIES	23	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b.k	ENSGT00940000157658.l	ENSGT00950000183215.c.a.b.l
Bos	ANCESTRAL SPECIES	21	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00970000194954	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b.l	ENSGT00950000183215.c.a.b.k	ENSGT00940000157658.l
Bos_a	ANCESTRAL SPECIES	95	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00970000194954	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23
Wild yak	MODERN SPECIES	210	PLAG1 (ENSBMUG00000011659) #9	ENSBMUG00000011692 #10	ENSBMUG00000011708	SDR16C5 (ENSBMUG00000011734) #11	ENSBMUG00000011743 #12	PENK (ENSBMUG00000011752) #13	BPNT2 (ENSBMUG00000011773) #14	ENSBMUG00000011795	ENSBMUG00000011815 #15	UBXN2B (ENSBMUG00000011833) #16	CYP7A1 (ENSBMUG00000011852) #17	ENSBMUG00000011917 #18	NSMAF (ENSBMUG00000012057) #19	TOX (ENSBMUG00000012126) #20	CA8 (ENSBMUG00000012155) #21	RAB2A (ENSBMUG00000012177) #22	ENSBMUG00000012195	ENSBMUG00000012219 #23	ENSBMUG00000012244 #23
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00970000194954	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b.l	ENSGT00940000157658.l	ENSGT00940000157658.k	ENSGT00940000159294
Cow	MODERN SPECIES	5	CHCHD7 (ENSBTAG00000049910) #10	ENSBTAG00000054153	SDR16C5 (ENSBTAG00000018570) #11	SDR16C6 (ENSBTAG00000040321) #12	PENK (ENSBTAG00000004924) #13	BPNT2 (ENSBTAG00000015637) #14	FAM110B (ENSBTAG00000050550) #15	ENSBTAG00000047136	UBXN2B (ENSBTAG00000009138) #16	CYP7A1 (ENSBTAG00000005287) #17	SDCBP (ENSBTAG00000019910) #18	NSMAF (ENSBTAG00000008958) #19	TOX (ENSBTAG00000004954) #20	ENSBTAG00000054521	CA8 (ENSBTAG00000017529) #21	RAB2A (ENSBTAG00000000948) #22	CHD7 (ENSBTAG00000021841) #23	CLVS1 (ENSBTAG00000043978) #24	ASPH (ENSBTAG00000026283) #25	NKAIN3 (ENSBTAG00000054400)	GGH (ENSBTAG00000007534)	TTPA (ENSBTAG00000022471)	YTHDF3 (ENSBTAG00000018557)	ENSBTAG00000055090	CYP7B1 (ENSBTAG00000001299) ##17	BHLHE22 (ENSBTAG00000033173)	ARMC1 (ENSBTAG00000015901)	MTFR1 (ENSBTAG00000008629)	PDE7A (ENSBTAG00000011614)	ENSBTAG00000055026	DNAJC5B (ENSBTAG00000015229)
Hybrid Bos Indicus	MODERN SPECIES	5	ENSBIXG00005022898 #12	PENK (ENSBIXG00005022883) #13	ENSBIXG00005022851	BPNT2 (ENSBIXG00005003904) #14	ENSBIXG00005022797	FAM110B (ENSBIXG00005003896) #15	ENSBIXG00005022760	ENSBIXG00005022753	UBXN2B (ENSBIXG00005022720) #16	ENSBIXG00005022654	CYP7A1 (ENSBIXG00005006466) #17	ENSBIXG00005022617 #18	NSMAF (ENSBIXG00005022405) #19	TOX (ENSBIXG00005005597) #20	CA8 (ENSBIXG00005022275) #21	RAB2A (ENSBIXG00005022188) #22	CHD7 (ENSBIXG00005022086) #23	CLVS1 (ENSBIXG00005022041) #24	ASPH (ENSBIXG00005003705) #25	ENSBIXG00005021840	NKAIN3 (ENSBIXG00005021820)	ENSBIXG00005003675	GGH (ENSBIXG00005007361)	TTPA (ENSBIXG00005021749)	YTHDF3 (ENSBIXG00005021673)	ENSBIXG00005021413	CYP7B1 (ENSBIXG00005021356) ##17	BHLHE22 (ENSBIXG00005021284)	ENSBIXG00005021269	ARMC1 (ENSBIXG00005007368)	MTFR1 (ENSBIXG00005021188)
American bison	MODERN SPECIES	3036	RPS20 (ENSBBBG00000017472) #7	MOS (ENSBBBG00000004319) #8	PLAG1 (ENSBBBG00000017437) #9	CHCHD7 (ENSBBBG00000017425) #10	SDR16C5 (ENSBBBG00000017391) #11	ENSBBBG00000017363 #12	PENK (ENSBBBG00000017347) #13	BPNT2 (ENSBBBG00000017338) #14	ENSBBBG00000007573	UBXN2B (ENSBBBG00000017321) #16	CYP7A1 (ENSBBBG00000008342) #17	ENSBBBG00000017283 #18	NSMAF (ENSBBBG00000004247) #19	TOX (ENSBBBG00000017129) #20	CA8 (ENSBBBG00000017090) #21	RAB2A (ENSBBBG00000017073) #22	ENSBBBG00000008924	ENSBBBG00000006851 #23	ENSBBBG00000004169 #23
Caprinae	ANCESTRAL SPECIES	18	ENSGT00390000003248.a.a.a.b.u #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.o.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00960000187139	ENSGT00390000014547.c.k.a	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.j	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Rambouillet Sheep	MODERN SPECIES	25	LYN (ENSOARG00020025503)	RPS20 (ENSOARG00020025515) #7	MOS (ENSOARG00020025525) #8	PLAG1 (ENSOARG00020025527) #9	CHCHD7 (ENSOARG00020025533) #10	SDR16C5 (ENSOARG00020025547) #11	ENSOARG00020025564 #12	PENK (ENSOARG00020025573) #13	BPNT2 (ENSOARG00020025578) #14	FAM110B (ENSOARG00020025582) #15	UBXN2B (ENSOARG00020025589) #16	CYP7A1 (ENSOARG00020025602) #17	SDCBP (ENSOARG00020025628) #18	TOX (ENSOARG00020025664) #20	CA8 (ENSOARG00020025684) #21	RAB2A (ENSOARG00020025690) #22	CHD7 (ENSOARG00020025706) #23	ENSOARG00020025727 #19	CLVS1 (ENSOARG00020025743) #24	ASPH (ENSOARG00020025751) #25	NKAIN3 (ENSOARG00020025781)	ENSOARG00020025786	ENSOARG00020025790	ENSOARG00020025792	GGH (ENSOARG00020025795)	TTPA (ENSOARG00020025797)	YTHDF3 (ENSOARG00020025799)	ENSOARG00020025808	BHLHE22 (ENSOARG00020025812)	ARMC1 (ENSOARG00020025817)	MTFR1 (ENSOARG00020025827)
Goat	MODERN SPECIES	5	PLAG1 (ENSCHIG00000000623) #9	CHCHD7 (ENSCHIG00000013735) #10	SDR16C5 (ENSCHIG00000020829) #11	ENSCHIG00000024910 #12	PENK (ENSCHIG00000023682) #13	ENSCHIG00000013126	BPNT2 (ENSCHIG00000012443) #14	FAM110B (ENSCHIG00000025189) #15	UBXN2B (ENSCHIG00000016275) #16	CYP7A1 (ENSCHIG00000012643) #17	SDCBP (ENSCHIG00000017671) #18	NSMAF (ENSCHIG00000015908) #19	TOX (ENSCHIG00000024631) #20	CA8 (ENSCHIG00000019407) #21	ENSCHIG00000007833	RAB2A (ENSCHIG00000020374) #22	CHD7 (ENSCHIG00000011729) #23	ENSCHIG00000008362	CLVS1 (ENSCHIG00000012139) #24	ASPH (ENSCHIG00000027073) #25	ENSCHIG00000004443	NKAIN3 (ENSCHIG00000012560)	GGH (ENSCHIG00000009898)	TTPA (ENSCHIG00000026720)	YTHDF3 (ENSCHIG00000026460)	ENSCHIG00000024644	BHLHE22 (ENSCHIG00000010726)	CYP7B1 (ENSCHIG00000012833) ##17	ENSCHIG00000012456	MTFR1 (ENSCHIG00000022918)	ENSCHIG00000012015
Siberian musk deer	MODERN SPECIES	181	PLAG1 (ENSMMSG00000018496) #9	CHCHD7 (ENSMMSG00000018418) #10	SDR16C5 (ENSMMSG00000018350) #11	ENSMMSG00000018326 #12	PENK (ENSMMSG00000018295) #13	BPNT2 (ENSMMSG00000018264) #14	FAM110B (ENSMMSG00000018255) #15	UBXN2B (ENSMMSG00000018228) #16	CYP7A1 (ENSMMSG00000018193) #17	ENSMMSG00000018010 #18	NSMAF (ENSMMSG00000017867) #19	TOX (ENSMMSG00000017819) #20	ENSMMSG00000017777	CA8 (ENSMMSG00000017738) #21	ENSMMSG00000017715	RAB2A (ENSMMSG00000017612) #22	CHD7 (ENSMMSG00000017316) #23	CLVS1 (ENSMMSG00000017257) #24	ASPH (ENSMMSG00000016920) #25	NKAIN3 (ENSMMSG00000016854)	ENSMMSG00000016830	GGH (ENSMMSG00000016780)	TTPA (ENSMMSG00000016740)	YTHDF3 (ENSMMSG00000016654)	ENSMMSG00000016616	BHLHE22 (ENSMMSG00000016600)	CYP7B1 (ENSMMSG00000016570) ##17	ARMC1 (ENSMMSG00000016484)	ENSMMSG00000016368	PDE7A (ENSMMSG00000016241)
Cetacea	ANCESTRAL SPECIES	17	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00390000009517.n	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00940000168359	ENSGT00950000183215.c.a.b
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	8	SDR16C5 (ENSBMSG00010014961) #11	PENK (ENSBMSG00010014925) #13	ENSBMSG00010014887	BPNT2 (ENSBMSG00010014836) #14	ENSBMSG00010014803	FAM110B (ENSBMSG00010014783) #15	UBXN2B (ENSBMSG00010014672) #16	CYP7A1 (ENSBMSG00010014601) #17	SDCBP (ENSBMSG00010014364) #18	NSMAF (ENSBMSG00010014175) #19	ENSBMSG00010014092	TOX (ENSBMSG00010014010) #20	ENSBMSG00010021342	ENSBMSG00010021332	CA8 (ENSBMSG00010021321) #21	ENSBMSG00010021303 #22	ENSBMSG00010021273 #23	ENSBMSG00010021251	ENSBMSG00010021235 #24	ENSBMSG00010021226 #25	ENSBMSG00010021190	NKAIN3 (ENSBMSG00010021175)	ENSBMSG00010021157	TTPA (ENSBMSG00010021140)	YTHDF3 (ENSBMSG00010021100)	ENSBMSG00010021073	BHLHE22 (ENSBMSG00010021064)	CYP7B1 (ENSBMSG00010021049) ##17	ENSBMSG00010021034	ENSBMSG00010021021	MTFR1 (ENSBMSG00010020993)
Blue whale	MODERN SPECIES	5	NARS1 (ENSBMSG00010011098)	ATP8B1 (ENSBMSG00010011152)	NEDD4L (ENSBMSG00010011414)	MALT1 (ENSBMSG00010012011)	ZNF532 (ENSBMSG00010012027)	ENSBMSG00010012043	SEC11C (ENSBMSG00010012060)	GRP (ENSBMSG00010012076)	RAX (ENSBMSG00010012086)	CPLX4 (ENSBMSG00010012103)	LMAN1 (ENSBMSG00010012124)	CCBE1 (ENSBMSG00010012156)	PMAIP1 (ENSBMSG00010012168)	MC4R (ENSBMSG00010012174)	ENSBMSG00010012188	ENSBMSG00010012205 #22	ENSBMSG00010012212	CDH20 (ENSBMSG00010012219)	RNF152 (ENSBMSG00010012226)	ENSBMSG00010012234	ENSBMSG00010012249	RELCH (ENSBMSG00010012278)	TNFRSF11A (ENSBMSG00010012355)	ZCCHC2 (ENSBMSG00010012471)	PHLPP1 (ENSBMSG00010012506)	BCL2 (ENSBMSG00010012548)	KDSR (ENSBMSG00010012563)	VPS4B (ENSBMSG00010012587)	SERPINB5 (ENSBMSG00010012616)	ENSBMSG00010012627	ENSBMSG00010012657
Odontoceti	DUPLICATION
Odontoceti	DUPLICATION
Odontoceti	ANCESTRAL SPECIES	20	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00390000009517.n	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100
Odontoceti_a	ANCESTRAL SPECIES	17	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100
Dolphin	MODERN SPECIES	3224																RAB2A (ENSTTRG00000009615) #22
Odontoceti_b	ANCESTRAL SPECIES	19	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.q.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100
Monodontidae	ANCESTRAL SPECIES	20	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.q.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162252.a.b.a	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100
Narwhal	MODERN SPECIES	300	MOS (ENSMMNG00015015102) #8	PLAG1 (ENSMMNG00015015090) #9	CHCHD7 (ENSMMNG00015015047) #10	SDR16C5 (ENSMMNG00015015011) #11	PENK (ENSMMNG00015014998) #13	BPNT2 (ENSMMNG00015014985) #14	ENSMMNG00015014975	FAM110B (ENSMMNG00015014967) #15	UBXN2B (ENSMMNG00015014945) #16	CYP7A1 (ENSMMNG00015014931) #17	ENSMMNG00015014889 #18	NSMAF (ENSMMNG00015014823) #19	TOX (ENSMMNG00015014789) #20	ENSMMNG00015014768	CA8 (ENSMMNG00015014739) #21	RAB2A (ENSMMNG00015014666) #22	ENSMMNG00015014634 #23	ENSMMNG00015014606	ENSMMNG00015014583	CLVS1 (ENSMMNG00015014569) #24	ASPH (ENSMMNG00015014513) #25	NKAIN3 (ENSMMNG00015014482)	GGH (ENSMMNG00015014466)	TTPA (ENSMMNG00015014455)	YTHDF3 (ENSMMNG00015014419)	ENSMMNG00015014408	ENSMMNG00015014395	BHLHE22 (ENSMMNG00015014386)	CYP7B1 (ENSMMNG00015014371) ##17	ARMC1 (ENSMMNG00015014356)	MTFR1 (ENSMMNG00015014325)
Vaquita	MODERN SPECIES	8	PLAG1 (ENSPSNG00000012314) #9	CHCHD7 (ENSPSNG00000012370) #10	SDR16C5 (ENSPSNG00000012633) #11	PENK (ENSPSNG00000012737) #13	BPNT2 (ENSPSNG00000012862) #14	ENSPSNG00000012901	FAM110B (ENSPSNG00000012940) #15	UBXN2B (ENSPSNG00000013041) #16	CYP7A1 (ENSPSNG00000013094) #17	ENSPSNG00000013252 #18	NSMAF (ENSPSNG00000013633) #19	TOX (ENSPSNG00000013722) #20	ENSPSNG00000013856	ENSPSNG00000013920	CA8 (ENSPSNG00000014024) #21	ENSPSNG00000014232 #22	ENSPSNG00000014444 #23	ENSPSNG00000014695	ENSPSNG00000014838	CLVS1 (ENSPSNG00000015072) #24	ASPH (ENSPSNG00000015174) #25	ENSPSNG00000015230	NKAIN3 (ENSPSNG00000015534)	GGH (ENSPSNG00000015614)	TTPA (ENSPSNG00000015656)	YTHDF3 (ENSPSNG00000015736)	ENSPSNG00000015879	BHLHE22 (ENSPSNG00000015901)	CYP7B1 (ENSPSNG00000015921) ##17	ARMC1 (ENSPSNG00000015992)	MTFR1 (ENSPSNG00000016195)
Sperm whale	MODERN SPECIES	6	PLAG1 (ENSPCTG00005006882) #9	CHCHD7 (ENSPCTG00005006756) #10	SDR16C5 (ENSPCTG00005006691) #11	PENK (ENSPCTG00005006664) #13	ENSPCTG00005006655	IMPAD1 (ENSPCTG00005006632) #14	ENSPCTG00005006619	FAM110B (ENSPCTG00005006604) #15	UBXN2B (ENSPCTG00005006509) #16	CYP7A1 (ENSPCTG00005006470) #17	SDCBP (ENSPCTG00005006360) #18	NSMAF (ENSPCTG00005006244) #19	TOX (ENSPCTG00005006198) #20	ENSPCTG00005006157	CA8 (ENSPCTG00005006125) #21	RAB2A (ENSPCTG00005006036) #22	ENSPCTG00005005961 #23	ENSPCTG00005005859	ENSPCTG00005005834	CLVS1 (ENSPCTG00005005796) #24	ASPH (ENSPCTG00005005499) #25	NKAIN3 (ENSPCTG00005005439)	GGH (ENSPCTG00005005426)	TTPA (ENSPCTG00005005393)	YTHDF3 (ENSPCTG00005005326)	ENSPCTG00005005287	ENSPCTG00005005232	ENSPCTG00005005204	BHLHE22 (ENSPCTG00005005190)	CYP7B1 (ENSPCTG00005005166) ##17	ENSPCTG00005005135
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000153887.A.y	ENSGT00940000156927	ENSGT00940000162083	ENSGT00940000159071	ENSGT00940000156384	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00940000154598	ENSGT00390000015102.b	ENSGT00390000009517.m	ENSGT00620000087966.a	ENSGT01030000234534.A.c.a	ENSGT01030000234534.A.c.b	ENSGT00700000106116	ENSGT00940000153886.a.b.o.b #22	ENSGT00390000006885.b.a	ENSGT00390000006885.b.b	ENSGT00550000075082	ENSGT00440000039367	ENSGT00940000159056	ENSGT00940000156287	ENSGT00960000191322	ENSGT00940000160635	ENSGT00390000009405.a.b	ENSGT00940000154392.a.c.b	ENSGT00940000154392.a.c.a	ENSGT00940000162217	ENSGT00940000160877	ENSGT00940000166310	ENSGT00940000162010
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000156927	ENSGT00940000162083	ENSGT00940000164056	ENSGT00940000159071	ENSGT00940000156384	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00940000154598	ENSGT00390000015102.b	ENSGT00390000009517.m	ENSGT00620000087966.a	ENSGT01030000234534.A.c.a	ENSGT01030000234534.A.c.b	ENSGT00700000106116	ENSGT00940000153886.a.b.o.b #22	ENSGT00390000006885.b.a	ENSGT00390000006885.b.b	ENSGT00550000075082	ENSGT00440000039367	ENSGT00940000159056	ENSGT00940000156287	ENSGT00960000191322	ENSGT00940000160635	ENSGT00390000009405.a.b	ENSGT00940000154392.a.c.b	ENSGT00940000154392.a.c.a	ENSGT00940000162217	ENSGT00940000160877	ENSGT00940000166310	ENSGT00940000162010
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000153887.A.y	ENSGT00940000156927	ENSGT00940000164056	ENSGT00940000159071	ENSGT00940000156384	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00940000154598	ENSGT00390000015102.b	ENSGT00390000009517.m	ENSGT00620000087966.a	ENSGT01030000234534.A.c.a	ENSGT01030000234534.A.c.b	ENSGT00700000106116	ENSGT00940000153886.a.b.o.b #22	ENSGT00390000006885.b.a	ENSGT00390000006885.b.b	ENSGT00540000070023.c.b.a.a.a.b.a.b	ENSGT00550000075082	ENSGT00440000039367	ENSGT00940000159056	ENSGT00940000156287	ENSGT00960000191322	ENSGT00940000160635	ENSGT00390000009405.a.b	ENSGT00940000154392.a.c.b	ENSGT00940000154392.a.c.a	ENSGT00940000162217	ENSGT00940000160877	ENSGT00940000166310
Vaquita	MODERN SPECIES	11	CYP46A1 (ENSPSNG00000003814)	ENSPSNG00000003763	CCDC85C (ENSPSNG00000003734)	CCNK (ENSPSNG00000003703)	SETD3 (ENSPSNG00000003667)	ENSPSNG00000003647	BCL11B (ENSPSNG00000003608)	VRK1 (ENSPSNG00000003557)	PAPOLA (ENSPSNG00000003512)	AK7 (ENSPSNG00000003480)	GSKIP (ENSPSNG00000003452)	ATG2B (ENSPSNG00000003367)	BDKRB1 (ENSPSNG00000003305)	BDKRB2 (ENSPSNG00000003286)	ENSPSNG00000003262	ENSPSNG00000003224 #22	TCL1A (ENSPSNG00000003201)	TCL1B (ENSPSNG00000003192)	ENSPSNG00000003164	GLRX5 (ENSPSNG00000003132)	SYNE3 (ENSPSNG00000003075)	CLMN (ENSPSNG00000003031)	DICER1 (ENSPSNG00000002970)	ENSPSNG00000002920	GSC (ENSPSNG00000002906)	ENSPSNG00000002884	ENSPSNG00000002760	SERPINA5 (ENSPSNG00000002690)	ENSPSNG00000002559	ENSPSNG00000002437	SERPINA11 (ENSPSNG00000002421)
Monodontidae	ANCESTRAL SPECIES	26	ENSGT00940000153887.A.y	ENSGT00940000156927	ENSGT00940000164056	ENSGT00940000159071	ENSGT00940000156384	ENSGT00940000153577.B	ENSGT00940000161060	ENSGT00940000155554	ENSGT00940000154598	ENSGT00390000015102.b	ENSGT00390000009517.m	ENSGT00620000087966.a	ENSGT01030000234534.A.c.a	ENSGT01030000234534.A.c.b	ENSGT00700000106116	ENSGT00940000153886.a.b.o.b #22	ENSGT00390000006885.b.a	ENSGT00390000006885.b.b	ENSGT00540000070023.c.b.a.a.a.b.a.b	ENSGT00550000075082	ENSGT00440000039367	ENSGT00940000159056	ENSGT00940000156287	ENSGT00960000191322	ENSGT00940000160635	ENSGT00390000009405.a.b	ENSGT00940000154392.a.c.b	ENSGT00940000154392.a.c.a	ENSGT00940000162217	ENSGT00940000160877	ENSGT00940000166310
Beluga whale	MODERN SPECIES	24	EML1 (ENSDLEG00000000755)	CYP46A1 (ENSDLEG00000000862)	HHIPL1 (ENSDLEG00000000895)	CCDC85C (ENSDLEG00000000927)	CCNK (ENSDLEG00000000958)	SETD3 (ENSDLEG00000000974)	BCL11B (ENSDLEG00000001001)	VRK1 (ENSDLEG00000001053)	ENSDLEG00000001269	AK7 (ENSDLEG00000001810)	GSKIP (ENSDLEG00000001846)	ATG2B (ENSDLEG00000001883)	BDKRB1 (ENSDLEG00000002179)	BDKRB2 (ENSDLEG00000002185)	C14orf132 (ENSDLEG00000002190)	ENSDLEG00000002199 #22	TCL1A (ENSDLEG00000002215)	TCL1B (ENSDLEG00000002220)	ENSDLEG00000002227	GLRX5 (ENSDLEG00000002233)	SYNE3 (ENSDLEG00000002247)	CLMN (ENSDLEG00000002279)	DICER1 (ENSDLEG00000002303)	GSC (ENSDLEG00000002364)	ENSDLEG00000002372	ENSDLEG00000002377	ENSDLEG00000002412	SERPINA5 (ENSDLEG00000002539)	ENSDLEG00000002551	SERPINA11 (ENSDLEG00000002564)	SERPINA1 (ENSDLEG00000002574)
Sperm whale	MODERN SPECIES	2	CYP46A1 (ENSPCTG00005021391)	HHIPL1 (ENSPCTG00005021323)	ENSPCTG00005021311	ENSPCTG00005021289	CCNK (ENSPCTG00005021265)	SETD3 (ENSPCTG00005021238)	BCL11B (ENSPCTG00005021188)	VRK1 (ENSPCTG00005021166)	PAPOLA (ENSPCTG00005021131)	AK7 (ENSPCTG00005021025)	GSKIP (ENSPCTG00005020997)	ATG2B (ENSPCTG00005020841)	BDKRB2 (ENSPCTG00005020776)	ENSPCTG00005020735	ENSPCTG00005020723	ENSPCTG00005020700 #22	TCL1A (ENSPCTG00005020676)	ENSPCTG00005020638	GLRX5 (ENSPCTG00005020621)	SYNE3 (ENSPCTG00005020499)	CLMN (ENSPCTG00005020464)	DICER1 (ENSPCTG00005020342)	GSC (ENSPCTG00005020307)	ENSPCTG00005020297	ENSPCTG00005020278	ENSPCTG00005019509	SERPINA5 (ENSPCTG00005019436)	ENSPCTG00005018946	ENSPCTG00005018883	SERPINA11 (ENSPCTG00005018843)	SERPINA1 (ENSPCTG00005018782)
Odontoceti	ANCESTRAL SPECIES	20	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00390000009517.n	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00940000168359	ENSGT00950000183215.c.a.b
Odontoceti_a	ANCESTRAL SPECIES	17	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Odontoceti_b	ANCESTRAL SPECIES	19	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.q.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000166547	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Monodontidae	ANCESTRAL SPECIES	20	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00840000130804	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.q.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00970000193421.C.b.d.a.b	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.o.a #22	ENSGT00960000189175	ENSGT00940000153886.a.b.p #22	ENSGT00940000153649.A #23	ENSGT00940000154706.gb	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162252.a.b.a	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Beluga whale	MODERN SPECIES	47	MOS (ENSDLEG00000014999) #8	PLAG1 (ENSDLEG00000014990) #9	CHCHD7 (ENSDLEG00000014964) #10	SDR16C5 (ENSDLEG00000014953) #11	PENK (ENSDLEG00000014942) #13	IMPAD1 (ENSDLEG00000014922) #14	ENSDLEG00000014911	FAM110B (ENSDLEG00000014904) #15	UBXN2B (ENSDLEG00000014883) #16	CYP7A1 (ENSDLEG00000014869) #17	SDCBP (ENSDLEG00000014840) #18	NSMAF (ENSDLEG00000014647) #19	TOX (ENSDLEG00000014593) #20	ENSDLEG00000014564	CA8 (ENSDLEG00000014524) #21	ENSDLEG00000014356 #22	CHD7 (ENSDLEG00000014252) #23	CLVS1 (ENSDLEG00000014225) #24	ASPH (ENSDLEG00000013927) #25	NKAIN3 (ENSDLEG00000013867)	GGH (ENSDLEG00000013842)	TTPA (ENSDLEG00000013829)	YTHDF3 (ENSDLEG00000013813)	ENSDLEG00000013804	ENSDLEG00000013798	ENSDLEG00000013782	ENSDLEG00000013768	BHLHE22 (ENSDLEG00000013759)	ENSDLEG00000013748	CYP7B1 (ENSDLEG00000013719) ##17	ARMC1 (ENSDLEG00000013690)
Suina	ANCESTRAL SPECIES	26	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00910000147681	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Chacoan peccary	MODERN SPECIES	840	LYN (ENSCWAG00000008356)	RPS20 (ENSCWAG00000008512) #7	MOS (ENSCWAG00000008622) #8	PLAG1 (ENSCWAG00000008649) #9	CHCHD7 (ENSCWAG00000008684) #10	SDR16C5 (ENSCWAG00000008786) #11	PENK (ENSCWAG00000008910) #13	BPNT2 (ENSCWAG00000008943) #14	FAM110B (ENSCWAG00000008983) #15	UBXN2B (ENSCWAG00000009024) #16	CYP7A1 (ENSCWAG00000009085) #17	SDCBP (ENSCWAG00000009146) #18	NSMAF (ENSCWAG00000009476) #19	TOX (ENSCWAG00000009558) #20	CA8 (ENSCWAG00000009637) #21	RAB2A (ENSCWAG00000009724) #22	ENSCWAG00000009840	ENSCWAG00000009900 #23	ENSCWAG00000010023 #23	CLVS1 (ENSCWAG00000010069) #24	ASPH (ENSCWAG00000010208) #25	NKAIN3 (ENSCWAG00000011268)	GGH (ENSCWAG00000011330)	TTPA (ENSCWAG00000011411)	YTHDF3 (ENSCWAG00000011547)	ENSCWAG00000011664	BHLHE22 (ENSCWAG00000011698)	CYP7B1 (ENSCWAG00000011713) ##17	ARMC1 (ENSCWAG00000011746)	ENSCWAG00000011813	MTFR1 (ENSCWAG00000011862)
Pig	MODERN SPECIES	12	RPS20 (ENSSSCG00000040470) #7	MOS (ENSSSCG00000006248) #8	PLAG1 (ENSSSCG00000006247) #9	ENSSSCG00000032573	SDR16C5 (ENSSSCG00000006245) #11	ENSSSCG00000036133 #12	PENK (ENSSSCG00000006243) #13	BPNT2 (ENSSSCG00000032846) #14	FAM110B (ENSSSCG00000006240) #15	UBXN2B (ENSSSCG00000006239) #16	CYP7A1 (ENSSSCG00000006238) #17	SDCBP (ENSSSCG00000006237) #18	NSMAF (ENSSSCG00000006236) #19	TOX (ENSSSCG00000006235) #20	CA8 (ENSSSCG00000006233) #21	RAB2A (ENSSSCG00000006232) #22	CHD7 (ENSSSCG00000006231) #23	CLVS1 (ENSSSCG00000006230) #24	ASPH (ENSSSCG00000025087) #25	NKAIN3 (ENSSSCG00000059747)	GGH (ENSSSCG00000037637)	TTPA (ENSSSCG00000058048)	ENSSSCG00000050933	YTHDF3 (ENSSSCG00000033144)	ENSSSCG00000063449	BHLHE22 (ENSSSCG00000059145)	CYP7B1 (ENSSSCG00000022092) ##17	ARMC1 (ENSSSCG00000006220)	MTFR1 (ENSSSCG00000006219)	ENSSSCG00000035826	PDE7A (ENSSSCG00000006218)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b #22
Hedgehog	MODERN SPECIES	781																RAB2A (ENSEEUG00000007700) #22
Common shrew	MODERN SPECIES	402																RAB2A (ENSSARG00000013511) #22
Atlantogenata	ANCESTRAL SPECIES	20	ENSGT00940000158011	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Xenarthra	ANCESTRAL SPECIES	403									ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25
Sloth	MODERN SPECIES	599																RAB2A (ENSCHOG00000013808) #22
Armadillo	MODERN SPECIES	4739							ENSDNOG00000036184	ENSDNOG00000041445	FAM110B (ENSDNOG00000018453) #15	UBXN2B (ENSDNOG00000041883) #16	CYP7A1 (ENSDNOG00000004420) #17	SDCBP (ENSDNOG00000046259) #18	ENSDNOG00000010583 #19	TOX (ENSDNOG00000017905) #20	CA8 (ENSDNOG00000032080) #21	RAB2A (ENSDNOG00000004155) #22	CHD7 (ENSDNOG00000011674) #23	CLVS1 (ENSDNOG00000018070) #24	ASPH (ENSDNOG00000018072) #25
Afrotheria	ANCESTRAL SPECIES	10												ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Tenrec	MODERN SPECIES	733																RAB2A (ENSETEG00000010340) #22
Afrotheria_a	ANCESTRAL SPECIES	10												ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Elephant	MODERN SPECIES	567			UBE2V2 (ENSLAFG00000017749)	MCM4 (ENSLAFG00000011550)	ENSLAFG00000011517	ENSLAFG00000028477	OPRK1 (ENSLAFG00000027667)	ATP6V1H (ENSLAFG00000005928)	ENSLAFG00000005932	TCEA1 (ENSLAFG00000020829)	ENSLAFG00000007156	SDCBP (ENSLAFG00000010757) #18	NSMAF (ENSLAFG00000014883) #19	TOX (ENSLAFG00000008007) #20	CA8 (ENSLAFG00000022921) #21	RAB2A (ENSLAFG00000015567) #22	CHD7 (ENSLAFG00000000403) #23	CLVS1 (ENSLAFG00000013282) #24	ASPH (ENSLAFG00000013283) #25	NKAIN3 (ENSLAFG00000017210)	GGH (ENSLAFG00000011543)	TTPA (ENSLAFG00000008681)	YTHDF3 (ENSLAFG00000016052)	ENSLAFG00000031948	CYP7B1 (ENSLAFG00000012756) ##17	ARMC1 (ENSLAFG00000007039)	MTFR1 (ENSLAFG00000012850)	PDE7A (ENSLAFG00000012855)	DNAJC5B (ENSLAFG00000013696)	TRIM55 (ENSLAFG00000001277)	CRH (ENSLAFG00000000557)
Hyrax	MODERN SPECIES	544																RAB2A (ENSPCAG00000008515) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	30	ENSGT00940000158723	ENSGT00940000153425.b.a.a	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000006758.b.b	ENSGT00940000162359	ENSGT00390000007230.h	ENSGT00940000160971	ENSGT00940000153886.a.b.c #22	ENSGT00390000005826.b.k	ENSGT00940000161248
Marsupialia_b	ANCESTRAL SPECIES	29	ENSGT00940000158723	ENSGT00940000153425.b.a.a	ENSGT00940000163390	ENSGT00940000162539	ENSGT00940000165216	ENSGT00940000160788	ENSGT00940000162313	ENSGT00940000163347	ENSGT00940000159516	ENSGT00940000156974	ENSGT00940000158878	ENSGT00390000006758.b.b	ENSGT00940000162359	ENSGT00390000007230.h	ENSGT00940000160971	ENSGT00940000153886.a.b.c #22	ENSGT00390000005826.b.k	ENSGT00940000161248
Diprotodontia	ANCESTRAL SPECIES	126															ENSGT00940000160971	ENSGT00940000153886.a.b.c #22	ENSGT00390000005826.b.k	ENSGT00940000161248
Diprotodontia_a	ANCESTRAL SPECIES	122															ENSGT00940000160971	ENSGT00940000153886.a.b.c #22	ENSGT00390000005826.b.k	ENSGT00940000161248
koala	MODERN SPECIES	485																ENSPCIG00000006949 #22
Common wonbat	MODERN SPECIES	1111														ENSVURG00010000351	SLITRK4 (ENSVURG00010000372)	ENSVURG00010000390 #22	ENSVURG00010000486	ENSVURG00010000513
Tasmanian devil	MODERN SPECIES	21	CD40LG (ENSSHAG00000021218)	ARHGEF6 (ENSSHAG00000008171)	ENSSHAG00000009439	ENSSHAG00000009891	ENSSHAG00000025401	ENSSHAG00000011122	ZIC3 (ENSSHAG00000029408)	ENSSHAG00000031918	ENSSHAG00000023320	F9 (ENSSHAG00000008930)	MCF2 (ENSSHAG00000009413)	ATP11C (ENSSHAG00000010576)	SOX3 (ENSSHAG00000007719)	ENSSHAG00000011738	SLITRK4 (ENSSHAG00000028656)	ENSSHAG00000031568 #22	ENSSHAG00000001348	SLITRK2 (ENSSHAG00000031278)	ENSSHAG00000028924	ENSSHAG00000020828	ENSSHAG00000031221	ENSSHAG00000010068	FMR1 (ENSSHAG00000012940)	ENSSHAG00000029814	AFF2 (ENSSHAG00000009556)	ENSSHAG00000024523	ENSSHAG00000013671	ENSSHAG00000024398	ENSSHAG00000028992	ENSSHAG00000025667	ENSSHAG00000014983
Opossum	MODERN SPECIES	627	ENSMODG00000014054	ENSMODG00000014039	ENSMODG00000014030	ENSMODG00000029210	ZIC3 (ENSMODG00000014029)	ENSMODG00000014019	F9 (ENSMODG00000014012)	MCF2 (ENSMODG00000014008)	ATP11C (ENSMODG00000013991)	ENSMODG00000025205	SOX3 (ENSMODG00000013932)	ENSMODG00000025204	ENSMODG00000041855	SLITRK4 (ENSMODG00000013917)	ENSMODG00000013912	ENSMODG00000013907 #22	ENSMODG00000013901	ENSMODG00000025197	SLITRK2 (ENSMODG00000013898)	ENSMODG00000029108	ENSMODG00000043366	ENSMODG00000039381	POU3F4 (ENSMODG00000014279)	ENSMODG00000014280	RPS6KA6 (ENSMODG00000014302)	HDX (ENSMODG00000014307)	ENSMODG00000014317	ENSMODG00000047117	ENSMODG00000014330	ENSMODG00000027748	ENSMODG00000014335
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.d #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00980000203407	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Opossum	MODERN SPECIES	2	PLAG1 (ENSMODG00000043175) #9	ENSMODG00000024930	SDR16C5 (ENSMODG00000009095) #11	ENSMODG00000009075 #12	PENK (ENSMODG00000049693) #13	ENSMODG00000038941	BPNT2 (ENSMODG00000008961) #14	FAM110B (ENSMODG00000008907) #15	UBXN2B (ENSMODG00000008866) #16	CYP7A1 (ENSMODG00000008855) #17	SDCBP (ENSMODG00000008819) #18	NSMAF (ENSMODG00000008797) #19	TOX (ENSMODG00000008712) #20	CA8 (ENSMODG00000008571) #21	ENSMODG00000040169	RAB2A (ENSMODG00000008556) #22	CHD7 (ENSMODG00000008488) #23	CLVS1 (ENSMODG00000008372) #24	ASPH (ENSMODG00000008351) #25	NKAIN3 (ENSMODG00000008298)	ENSMODG00000040439	ENSMODG00000037349	GGH (ENSMODG00000008291)	ENSMODG00000042561	TTPA (ENSMODG00000008268)	YTHDF3 (ENSMODG00000008255)	ENSMODG00000037783	ENSMODG00000008228	ENSMODG00000050164	ENSMODG00000008217 ##17	ARMC1 (ENSMODG00000008168)
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.d #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00980000203407	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		LAPTM4B (ENSSHAG00000002018)	MATN2 (ENSSHAG00000004130)	ENSSHAG00000023594	ENSSHAG00000001004	POP1 (ENSSHAG00000000296)	NIPAL2 (ENSSHAG00000004100)	KCNS2 (ENSSHAG00000029074)	STK3 (ENSSHAG00000029839)	OSR2 (ENSSHAG00000007793)	VPS13B (ENSSHAG00000030906)	ENSSHAG00000006581	RGS22 (ENSSHAG00000000912)	FBXO43 (ENSSHAG00000026851)	POLR2K (ENSSHAG00000022682)	SPAG1 (ENSSHAG00000006506)	ENSSHAG00000025709 #22	RNF19A (ENSSHAG00000007661)	ANKRD46 (ENSSHAG00000023496)	SNX31 (ENSSHAG00000010486)	ENSSHAG00000025066	ENSSHAG00000012671	ENSSHAG00000014486	GRHL2 (ENSSHAG00000015849)	NCALD (ENSSHAG00000028894)	RRM2B (ENSSHAG00000017628)	UBR5 (ENSSHAG00000017701)	ENSSHAG00000029341	ENSSHAG00000028599	KLF10 (ENSSHAG00000018290)	AZIN1 (ENSSHAG00000018535)	ENSSHAG00000018681
Tasmanian devil	MODERN SPECIES		RPS20 (ENSSHAG00000031978) #7	MOS (ENSSHAG00000030233) #8	PLAG1 (ENSSHAG00000010371) #9	CHCHD7 (ENSSHAG00000010193) #10	SDR16C5 (ENSSHAG00000009512) #11	ENSSHAG00000024007 #12	PENK (ENSSHAG00000022421) #13	BPNT2 (ENSSHAG00000030599) #14	FAM110B (ENSSHAG00000024247) #15	UBXN2B (ENSSHAG00000003004) #16	CYP7A1 (ENSSHAG00000013201) #17	SDCBP (ENSSHAG00000012826) #18	NSMAF (ENSSHAG00000012487) #19	TOX (ENSSHAG00000007522) #20	CA8 (ENSSHAG00000007782) #21	ENSSHAG00000021182 #22	ENSSHAG00000004796	CHD7 (ENSSHAG00000011522) #23	CLVS1 (ENSSHAG00000006016) #24	ASPH (ENSSHAG00000000974) #25	NKAIN3 (ENSSHAG00000031817)	TTPA (ENSSHAG00000032102)	GGH (ENSSHAG00000010843)	YTHDF3 (ENSSHAG00000009482)	ENSSHAG00000025212	ENSSHAG00000020524	ENSSHAG00000025575 ##17	ARMC1 (ENSSHAG00000015467)	MTFR1 (ENSSHAG00000027884)	PDE7A (ENSSHAG00000014928)	DNAJC5B (ENSSHAG00000013754)
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.d #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00980000203407	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Wallaby	MODERN SPECIES	1359																ENSMEUG00000014459 #22
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000003248.a.a.a.b #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502.a #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b.d #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00980000203407	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1048	ENSVURG00010020326 #9	ENSVURG00010020342 #10	ENSVURG00010020372 #11	ENSVURG00010020378 #12	ENSVURG00010020387 #13	ENSVURG00010020396 #14	ENSVURG00010020408	ENSVURG00010020425 #15	ENSVURG00010020433 #16	ENSVURG00010020451 #17	ENSVURG00010020487 #18	ENSVURG00010020495 #19	ENSVURG00010020540 #20	ENSVURG00010020551	ENSVURG00010020562 #21	ENSVURG00010020574 #22	ENSVURG00010020590 #23	ENSVURG00010020602	ENSVURG00010020610 #24	ENSVURG00010020622 #25	ENSVURG00010020638	ENSVURG00010020643	ENSVURG00010020644	ENSVURG00010020648	ENSVURG00010020650	ENSVURG00010020661	ENSVURG00010020665	ENSVURG00010020671	ENSVURG00010020676 ##17	ENSVURG00010020685	ENSVURG00010020690
Common wonbat	MODERN SPECIES	1048	ENSVURG00010006519 #10	ENSVURG00010006542 #11	ENSVURG00010006550 #12	ENSVURG00010006555 #13	ENSVURG00010006567	ENSVURG00010006577 #14	ENSVURG00010006594	ENSVURG00010006609 #15	ENSVURG00010006624 #16	ENSVURG00010006633 #17	ENSVURG00010006655 #18	ENSVURG00010006683 #19	ENSVURG00010006781 #20	ENSVURG00010006790	ENSVURG00010006797 #21	ENSVURG00010006806 #22	ENSVURG00010007085 #23	ENSVURG00010014124	ENSVURG00010014136 #24	ENSVURG00010014170 #25	ENSVURG00010014259	ENSVURG00010014266	ENSVURG00010014274	ENSVURG00010014281	ENSVURG00010014297	ENSVURG00010014323	ENSVURG00010014331	ENSVURG00010014354	ENSVURG00010014368 ##17	ENSVURG00010014407	ENSVURG00010014418
koala	MODERN SPECIES	110	RPS20 (ENSPCIG00000011576) #7	MOS (ENSPCIG00000011573) #8	PLAG1 (ENSPCIG00000011571) #9	CHCHD7 (ENSPCIG00000011568) #10	SDR16C5 (ENSPCIG00000011567) #11	PENK (ENSPCIG00000016638) #13	BPNT2 (ENSPCIG00000013018) #14	FAM110B (ENSPCIG00000013271) #15	UBXN2B (ENSPCIG00000005156) #16	CYP7A1 (ENSPCIG00000005169) #17	SDCBP (ENSPCIG00000000015) #18	NSMAF (ENSPCIG00000000016) #19	TOX (ENSPCIG00000032348) #20	ENSPCIG00000000020	CA8 (ENSPCIG00000000022) #21	ENSPCIG00000000024 #22	CHD7 (ENSPCIG00000000025) #23
Platypus	MODERN SPECIES	18	LYN (ENSOANG00000005501)	RPS20 (ENSOANG00000005502) #7	MOS (ENSOANG00000038966) #8	PLAG1 (ENSOANG00000005503) #9	CHCHD7 (ENSOANG00000005504) #10	ENSOANG00000002450 #11	PENK (ENSOANG00000006273) #13	BPNT2 (ENSOANG00000005030) #14	FAM110B (ENSOANG00000030653) #15	UBXN2B (ENSOANG00000005031) #16	CYP7A1 (ENSOANG00000005032) #17	SDCBP (ENSOANG00000005034) #18	NSMAF (ENSOANG00000005036) #19	TOX (ENSOANG00000005038) #20	CA8 (ENSOANG00000005040) #21	RAB2A (ENSOANG00000041731) #22	CHD7 (ENSOANG00000005042) #23	CLVS1 (ENSOANG00000005044) #24	ASPH (ENSOANG00000005045) #25	NKAIN3 (ENSOANG00000005046)	GGH (ENSOANG00000005049)	TTPA (ENSOANG00000049899)	YTHDF3 (ENSOANG00000005053)	ENSOANG00000040949	ENSOANG00000005056 ##17	ARMC1 (ENSOANG00000039345)	MTFR1 (ENSOANG00000002298)	PDE7A (ENSOANG00000002300)	DNAJC5B (ENSOANG00000002302)	TRIM55 (ENSOANG00000002304)	ENSOANG00000002306
Sauria	ANCESTRAL SPECIES		ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618 #12	ENSGT01030000234975	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000158011	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000164689	ENSGT00390000003248.a.b ##7	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Indian cobra	MODERN SPECIES	2	LYN (ENSNNAG00000017409)	ENSNNAG00000017424	ENSNNAG00000017465 ##7	MOS (ENSNNAG00000017474) #8	PLAG1 (ENSNNAG00000017478) #9	ENSNNAG00000017484	SDR16C5 (ENSNNAG00000017488) #11	PENK (ENSNNAG00000017493) #13	FAM110B (ENSNNAG00000017499) #15	UBXN2B (ENSNNAG00000017502) #16	CYP7A1 (ENSNNAG00000017519) #17	SDCBP (ENSNNAG00000017533) #18	NSMAF (ENSNNAG00000017542) #19	TOX (ENSNNAG00000017578) #20	CA8 (ENSNNAG00000007568) #21	RAB2A (ENSNNAG00000007582) #22	CHD7 (ENSNNAG00000007604) #23	ENSNNAG00000007742 #24	ENSNNAG00000007889 #24	ASPH (ENSNNAG00000007906) #25	ENSNNAG00000007957 #25	NKAIN3 (ENSNNAG00000008091)	GGH (ENSNNAG00000008118)	TTPA (ENSNNAG00000008150)	RNF4 (ENSNNAG00000008176)	ENSNNAG00000008197	YTHDF3 (ENSNNAG00000008225)	ENSNNAG00000008280	CYP7B1 (ENSNNAG00000008296) ##17	ARMC1 (ENSNNAG00000008328)	MTFR1 (ENSNNAG00000008363)
Elapidae_a	ANCESTRAL SPECIES	27	ENSGT00940000158011	ENSGT00390000003248.a.b ##7	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.fb.a #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Acanthophiinae	ANCESTRAL SPECIES	15	ENSGT00390000018056	ENSGT00940000158011	ENSGT00390000003248.a.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.fb.a #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000153244.B.ic.a	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Eastern brown snake	MODERN SPECIES	30	TGS1 (ENSPTXG00000004058)	LYN (ENSPTXG00000004055)	ENSPTXG00000004051 ##7	MOS (ENSPTXG00000004049) #8	PLAG1 (ENSPTXG00000004047) #9	CHCHD7 (ENSPTXG00000004045) #10	SDR16C5 (ENSPTXG00000004044) #11	PENK (ENSPTXG00000004042) #13	FAM110B (ENSPTXG00000004040) #15	UBXN2B (ENSPTXG00000004003) #16	CYP7A1 (ENSPTXG00000004000) #17	SDCBP (ENSPTXG00000003998) #18	NSMAF (ENSPTXG00000003992) #19	TOX (ENSPTXG00000003989) #20	CA8 (ENSPTXG00000003987) #21	RAB2A (ENSPTXG00000003983) #22	CHD7 (ENSPTXG00000003979) #23	ENSPTXG00000003977 #24	ENSPTXG00000003976 #24	ASPH (ENSPTXG00000003967) #25	NKAIN3 (ENSPTXG00000003963)	GGH (ENSPTXG00000003961)	TTPA (ENSPTXG00000003959)	RNF4 (ENSPTXG00000003958)	YTHDF3 (ENSPTXG00000003956)	ENSPTXG00000003954	ENSPTXG00000003951	CYP7B1 (ENSPTXG00000003949) ##17	ARMC1 (ENSPTXG00000003948)	MTFR1 (ENSPTXG00000003946)	PDE7A (ENSPTXG00000002775)
Mainland tiger snake	MODERN SPECIES	5	LYN (ENSNSUG00000016285)	ENSNSUG00000016283 ##7	MOS (ENSNSUG00000016282) #8	PLAG1 (ENSNSUG00000016281) #9	CHCHD7 (ENSNSUG00000016280) #10	SDR16C5 (ENSNSUG00000016279) #11	PENK (ENSNSUG00000016278) #13	FAM110B (ENSNSUG00000016277) #15	UBXN2B (ENSNSUG00000016276) #16	CYP7A1 (ENSNSUG00000016275) #17	SDCBP (ENSNSUG00000016274) #18	NSMAF (ENSNSUG00000015647) #19	TOX (ENSNSUG00000015639) #20	ENSNSUG00000015638	CA8 (ENSNSUG00000015577) #21	RAB2A (ENSNSUG00000015576) #22	CHD7 (ENSNSUG00000015571) #23	ENSNSUG00000015570 #24	ENSNSUG00000015568 #24	ASPH (ENSNSUG00000015566) #25	ENSNSUG00000015562 #25	NKAIN3 (ENSNSUG00000015559)	GGH (ENSNSUG00000015558)	TTPA (ENSNSUG00000015557)	RNF4 (ENSNSUG00000015556)	YTHDF3 (ENSNSUG00000015555)	ENSNSUG00000015553	ENSNSUG00000015550	CYP7B1 (ENSNSUG00000015545) ##17	ARMC1 (ENSNSUG00000015544)	MTFR1 (ENSNSUG00000015541)
Blue-lipped sea krait	MODERN SPECIES	8759																RAB2A (ENSLLTG00000010433) #22
Lizard	MODERN SPECIES	3	PKIA (ENSACAG00000013361)	ENSACAG00000037966	PEX2 (ENSACAG00000013356)	ZFHX4 (ENSACAG00000027516)	ENSACAG00000043626	ENSACAG00000038282	FAM110B (ENSACAG00000005308) #15	UBXN2B (ENSACAG00000005315) #16	CYP7A1 (ENSACAG00000005350) #17	SDCBP (ENSACAG00000005405) #18	NSMAF (ENSACAG00000005468) #19	TOX (ENSACAG00000005632) #20	ENSACAG00000044708	ENSACAG00000044324	CA8 (ENSACAG00000005662) #21	RAB2A (ENSACAG00000038869) #22	CHD7 (ENSACAG00000005760) #23	ENSACAG00000040436	CLVS1 (ENSACAG00000006013) #24	ENSACAG00000040821 #25	ENSACAG00000006036 #25	NKAIN3 (ENSACAG00000039811)	ENSACAG00000041738	ENSACAG00000041754	GGH (ENSACAG00000016891)	TTPA (ENSACAG00000043920)	ENSACAG00000016861	YTHDF3 (ENSACAG00000016837)	ENSACAG00000043749	CYP7B1 (ENSACAG00000016805) ##17	ENSACAG00000041295
Laterata	ANCESTRAL SPECIES	5	ENSGT00390000003248.b ##7	ENSGT00390000003248.a.a #7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618 #12	ENSGT00950000183149.A #13	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00390000010318	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Common wall lizard	MODERN SPECIES	15	CHCHD7 (ENSPMRG00000008324) #10	SDR16C5 (ENSPMRG00000008314) #11	PENK (ENSPMRG00000008297) #13	ENSPMRG00000008293	FAM110B (ENSPMRG00000008288) #15	UBXN2B (ENSPMRG00000008274) #16	CYP7A1 (ENSPMRG00000008259) #17	SDCBP (ENSPMRG00000008239) #18	NSMAF (ENSPMRG00000007780) #19	ENSPMRG00000007695	ENSPMRG00000007691	TOX (ENSPMRG00000007670) #20	ENSPMRG00000007663	ENSPMRG00000007660	CA8 (ENSPMRG00000007658) #21	RAB2A (ENSPMRG00000007640) #22	CHD7 (ENSPMRG00000007599) #23	ENSPMRG00000007584	ENSPMRG00000007575 #24	ENSPMRG00000007552 #25	ENSPMRG00000007540	ENSPMRG00000007535	NKAIN3 (ENSPMRG00000007529)	GGH (ENSPMRG00000007511)	ENSPMRG00000007494	TTPA (ENSPMRG00000007485)	RNF4 (ENSPMRG00000007477)	YTHDF3 (ENSPMRG00000007468)	ENSPMRG00000007455	ENSPMRG00000007444	BHLHE22 (ENSPMRG00000007435)
Argentine black and white tegu	MODERN SPECIES	29	ENSSMRG00000017201 #11	ENSSMRG00000017200	ENSSMRG00000017199 #11	ENSSMRG00000017197 #12	ENSSMRG00000017183 #11	ENSSMRG00000017180	ENSSMRG00000017176 #12	PENK (ENSSMRG00000017175) #13	FAM110B (ENSSMRG00000017165) #15	UBXN2B (ENSSMRG00000017158) #16	CYP7A1 (ENSSMRG00000017051) #17	SDCBP (ENSSMRG00000017046) #18	NSMAF (ENSSMRG00000017040) #19	TOX (ENSSMRG00000017038) #20	CA8 (ENSSMRG00000017022) #21	RAB2A (ENSSMRG00000017016) #22	CHD7 (ENSSMRG00000011869) #23	CLVS1 (ENSSMRG00000011850) #24	ASPH (ENSSMRG00000011849) #25	NKAIN3 (ENSSMRG00000011837)	GGH (ENSSMRG00000011814)	TTPA (ENSSMRG00000011812)	ENSSMRG00000011809	YTHDF3 (ENSSMRG00000011801)	BHLHE22 (ENSSMRG00000011787)	CYP7B1 (ENSSMRG00000011785) ##17	ARMC1 (ENSSMRG00000011775)	MTFR1 (ENSSMRG00000011774)	PDE7A (ENSSMRG00000011768)	DNAJC5B (ENSSMRG00000011765)	TRIM55 (ENSSMRG00000011763)
tuatara	MODERN SPECIES	1829																RAB2A (ENSSPUG00000009213) #22	CHD7 (ENSSPUG00000009235) #23	ENSSPUG00000009291 #24	ENSSPUG00000009302 #24	ENSSPUG00000009309 #25	ENSSPUG00000009323 #25	NKAIN3 (ENSSPUG00000009340)	GGH (ENSSPUG00000009354)	TTPA (ENSSPUG00000009370)	YTHDF3 (ENSSPUG00000009390)
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294
Archosauria	ANCESTRAL SPECIES		ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Aves	ANCESTRAL SPECIES	9	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
African ostrich	MODERN SPECIES	551	RPS20 (ENSSCUG00000007402) ##7	MOS (ENSSCUG00000007400) #8	PLAG1 (ENSSCUG00000007397) #9	ENSSCUG00000007395	SDR16C5 (ENSSCUG00000007392) #11	ENSSCUG00000007384 #12	PENK (ENSSCUG00000007375) #13	BPNT2 (ENSSCUG00000007372) #14	FAM110B (ENSSCUG00000007363) #15	UBXN2B (ENSSCUG00000007360) #16	CYP7A1 (ENSSCUG00000007358) #17	SDCBP (ENSSCUG00000007355) #18	NSMAF (ENSSCUG00000007349) #19	TOX (ENSSCUG00000007338) #20	CA8 (ENSSCUG00000007332) #21	RAB2A (ENSSCUG00000007329) #22	CHD7 (ENSSCUG00000007161) #23	CLVS1 (ENSSCUG00000007122) #24	ASPH (ENSSCUG00000007117) #25	ENSSCUG00000007111 #25	NKAIN3 (ENSSCUG00000007108)	GGH (ENSSCUG00000007104)	TTPA (ENSSCUG00000007102)	ENSSCUG00000007100	YTHDF3 (ENSSCUG00000007099)	CYP7B1 (ENSSCUG00000007089) ##17	ARMC1 (ENSSCUG00000007084)	MTFR1 (ENSSCUG00000007082)	PDE7A (ENSSCUG00000007075)
Neognathae	ANCESTRAL SPECIES		ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Great tit	MODERN SPECIES	11	RPS20 (ENSPMJG00000015709) ##7	ENSPMJG00000015711	PLAG1 (ENSPMJG00000015712) #9	CHCHD7 (ENSPMJG00000015713) #10	ENSPMJG00000015715 #12	SDR16C5 (ENSPMJG00000015716) #11	PENK (ENSPMJG00000015717) #13	BPNT2 (ENSPMJG00000015718) #14	FAM110B (ENSPMJG00000015721) #15	UBXN2B (ENSPMJG00000015723) #16	CYP7A1 (ENSPMJG00000015724) #17	SDCBP (ENSPMJG00000015725) #18	NSMAF (ENSPMJG00000015726) #19	TOX (ENSPMJG00000015727) #20	CA8 (ENSPMJG00000015731) #21	RAB2A (ENSPMJG00000015734) #22	CHD7 (ENSPMJG00000015736) #23	CLVS1 (ENSPMJG00000015741) #24	ENSPMJG00000015742 #25	ENSPMJG00000015743 #25	NKAIN3 (ENSPMJG00000015744)	GGH (ENSPMJG00000015745)	TTPA (ENSPMJG00000015746)	YTHDF3 (ENSPMJG00000015747)	BHLHE22 (ENSPMJG00000015752)	CYP7B1 (ENSPMJG00000015753) ##17	ARMC1 (ENSPMJG00000000151)	MTFR1 (ENSPMJG00000000165)	PDE7A (ENSPMJG00000000190)	DNAJC5B (ENSPMJG00000000234)	TRIM55 (ENSPMJG00000000331)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Flycatcher	MODERN SPECIES	11	ENSFALG00000010268	RPS20 (ENSFALG00000010283) ##7	MOS (ENSFALG00000014816) #8	PLAG1 (ENSFALG00000025817) #9	CHCHD7 (ENSFALG00000025511) #10	SDR16C5 (ENSFALG00000010304) #11	PENK (ENSFALG00000010315) #13	BPNT2 (ENSFALG00000010322) #14	FAM110B (ENSFALG00000014836) #15	UBXN2B (ENSFALG00000027862) #16	CYP7A1 (ENSFALG00000010340) #17	SDCBP (ENSFALG00000010344) #18	NSMAF (ENSFALG00000010345) #19	TOX (ENSFALG00000010350) #20	CA8 (ENSFALG00000005638) #21	RAB2A (ENSFALG00000025952) #22	CHD7 (ENSFALG00000005570) #23	ENSFALG00000024079	CLVS1 (ENSFALG00000005552) #24	ASPH (ENSFALG00000005547) #25	NKAIN3 (ENSFALG00000005542)	GGH (ENSFALG00000028797)	TTPA (ENSFALG00000027010)	YTHDF3 (ENSFALG00000005503)	ENSFALG00000023358	CYP7B1 (ENSFALG00000005492) ##17	ARMC1 (ENSFALG00000025115)	MTFR1 (ENSFALG00000005475)	PDE7A (ENSFALG00000005464)	DNAJC5B (ENSFALG00000005461)	TRIM55 (ENSFALG00000005453)
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Medium ground finch	MODERN SPECIES	49															CA8 (ENSGFOG00000013985) #21	RAB2A (ENSGFOG00000013982) #22	CHD7 (ENSGFOG00000013971) #23	CLVS1 (ENSGFOG00000013966) #24	ASPH (ENSGFOG00000013962) #25	NKAIN3 (ENSGFOG00000013960)	GGH (ENSGFOG00000013957)	TTPA (ENSGFOG00000013956)	YTHDF3 (ENSGFOG00000013955)	CYP7B1 (ENSGFOG00000013952) ##17	ARMC1 (ENSGFOG00000013951)	MTFR1 (ENSGFOG00000013948)	PDE7A (ENSGFOG00000013945)	DNAJC5B (ENSGFOG00000013943)	TRIM55 (ENSGFOG00000013938)	ADHFE1 (ENSGFOG00000013932)	ENSGFOG00000013928
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Common canary	MODERN SPECIES		LYN (ENSSCAG00000012839)	MOS (ENSSCAG00000012851) #8	PLAG1 (ENSSCAG00000012852) #9	ENSSCAG00000012861	ENSSCAG00000012866 #12	SDR16C5 (ENSSCAG00000012869) #11	PENK (ENSSCAG00000012873) #13	BPNT2 (ENSSCAG00000012880) #14	FAM110B (ENSSCAG00000012889) #15	UBXN2B (ENSSCAG00000012891) #16	CYP7A1 (ENSSCAG00000012896) #17	SDCBP (ENSSCAG00000012899) #18	NSMAF (ENSSCAG00000012905) #19	TOX (ENSSCAG00000012920) #20	CA8 (ENSSCAG00000012935) #21	RAB2A (ENSSCAG00000012948) #22	CHD7 (ENSSCAG00000013076) #23	CLVS1 (ENSSCAG00000013722) #24	ASPH (ENSSCAG00000013744) #25	ENSSCAG00000013771	COPS5 (ENSSCAG00000013773)	PPP1R42 (ENSSCAG00000013777)	TCF24 (ENSSCAG00000013783)	MCMDC2 (ENSSCAG00000013792)	SGK3 (ENSSCAG00000013797)	VCPIP1 (ENSSCAG00000013805)	MYBL1 (ENSSCAG00000013810)	VXN (ENSSCAG00000013825)	ADHFE1 (ENSSCAG00000013830)	CRH (ENSSCAG00000013837)	TRIM55 (ENSSCAG00000013840)
Zebra finch	MODERN SPECIES	12	RPS20 (ENSTGUG00000011097) ##7	MOS (ENSTGUG00000024252) #8	PLAG1 (ENSTGUG00000025027) #9	ENSTGUG00000028637 #10	ENSTGUG00000011102 #12	SDR16C5 (ENSTGUG00000011110) #11	PENK (ENSTGUG00000011112) #13	BPNT2 (ENSTGUG00000025960) #14	FAM110B (ENSTGUG00000011117) #15	UBXN2B (ENSTGUG00000011120) #16	CYP7A1 (ENSTGUG00000011128) #17	SDCBP (ENSTGUG00000025408) #18	NSMAF (ENSTGUG00000011150) #19	TOX (ENSTGUG00000011174) #20	CA8 (ENSTGUG00000011176) #21	RAB2A (ENSTGUG00000011182) #22	CHD7 (ENSTGUG00000011196) #23	ENSTGUG00000021817	CLVS1 (ENSTGUG00000011217) #24	ASPH (ENSTGUG00000011226) #25	NKAIN3 (ENSTGUG00000011233)	GGH (ENSTGUG00000011234)	TTPA (ENSTGUG00000011241)	YTHDF3 (ENSTGUG00000011243)	BHLHE22 (ENSTGUG00000029320)	CYP7B1 (ENSTGUG00000011247) ##17	ARMC1 (ENSTGUG00000011252)	MTFR1 (ENSTGUG00000011257)	PDE7A (ENSTGUG00000011264)	DNAJC5B (ENSTGUG00000027657)	TRIM55 (ENSTGUG00000011269)
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000163618.c #12	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Kakapo	MODERN SPECIES		RPS20 (ENSSHBG00005003914) ##7	MOS (ENSSHBG00005003910) #8	PLAG1 (ENSSHBG00005003901) #9	CHCHD7 (ENSSHBG00005003893) #10	ENSSHBG00005003884 #12	ENSSHBG00005003878 #12	PENK (ENSSHBG00005003870) #13	BPNT2 (ENSSHBG00005003862) #14	FAM110B (ENSSHBG00005003853) #15	UBXN2B (ENSSHBG00005003839) #16	CYP7A1 (ENSSHBG00005003831) #17	SDCBP (ENSSHBG00005003824) #18	NSMAF (ENSSHBG00005003752) #19	TOX (ENSSHBG00005003713) #20	CA8 (ENSSHBG00005003708) #21	RAB2A (ENSSHBG00005003701) #22	CHD7 (ENSSHBG00005002196) #23	CLVS1 (ENSSHBG00005001627) #24	ENSSHBG00005001612 #25	ENSSHBG00005001581 #25	NKAIN3 (ENSSHBG00005001548)	GGH (ENSSHBG00005001523)	TTPA (ENSSHBG00005001505)	YTHDF3 (ENSSHBG00005001494)	BHLHE22 (ENSSHBG00005001481)	CYP7B1 (ENSSHBG00005001472) ##17	ARMC1 (ENSSHBG00005001458)	MTFR1 (ENSSHBG00005001442)	ENSSHBG00005001420	ENSSHBG00005001391	ENSSHBG00005001407
Golden eagle	MODERN SPECIES	20	RPS20 (ENSACCG00020004177) ##7	MOS (ENSACCG00020004171) #8	PLAG1 (ENSACCG00020004164) #9	CHCHD7 (ENSACCG00020004156) #10	ENSACCG00020004147 #12	ENSACCG00020004134 #12	PENK (ENSACCG00020004121) #13	BPNT2 (ENSACCG00020004116) #14	FAM110B (ENSACCG00020004110) #15	UBXN2B (ENSACCG00020004062) #16	CYP7A1 (ENSACCG00020004038) #17	SDCBP (ENSACCG00020004027) #18	NSMAF (ENSACCG00020006890) #19	TOX (ENSACCG00020006870) #20	CA8 (ENSACCG00020006837) #21	RAB2A (ENSACCG00020006808) #22	CHD7 (ENSACCG00020006382) #23	CLVS1 (ENSACCG00020006038) #24	ENSACCG00020006032 #25	ENSACCG00020005983 #25	NKAIN3 (ENSACCG00020005914)	GGH (ENSACCG00020005899)	TTPA (ENSACCG00020005877)	YTHDF3 (ENSACCG00020005855)	BHLHE22 (ENSACCG00020005837)	CYP7B1 (ENSACCG00020005826) ##17	ARMC1 (ENSACCG00020005806)	MTFR1 (ENSACCG00020005781)	ENSACCG00020005772	PDE7A (ENSACCG00020005743)	DNAJC5B (ENSACCG00020005708)
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484.b	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Anatidae	ANCESTRAL SPECIES	3	ENSGT00940000164689	ENSGT00390000003248.a.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484.b	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Pink-footed goose	MODERN SPECIES	62	ENSABRG00000005585	ENSABRG00000005598 ##7	MOS (ENSABRG00000005605) #8	PLAG1 (ENSABRG00000005610) #9	CHCHD7 (ENSABRG00000005617) #10	SDR16C5 (ENSABRG00000005642) #11	PENK (ENSABRG00000005650) #13	BPNT2 (ENSABRG00000005667) #14	FAM110B (ENSABRG00000005708) #15	UBXN2B (ENSABRG00000005714) #16	CYP7A1 (ENSABRG00000005722) #17	SDCBP (ENSABRG00000005737) #18	NSMAF (ENSABRG00000005742) #19	TOX (ENSABRG00000005797) #20	CA8 (ENSABRG00000005857) #21	RAB2A (ENSABRG00000005879) #22	CHD7 (ENSABRG00000006196) #23	CLVS1 (ENSABRG00000011678) #24	ASPH (ENSABRG00000011700) #25	ENSABRG00000011824	GGH (ENSABRG00000011841)	TTPA (ENSABRG00000011863)	YTHDF3 (ENSABRG00000011878)	ENSABRG00000011926	CYP7B1 (ENSABRG00000011931) ##17	ARMC1 (ENSABRG00000011982)	MTFR1 (ENSABRG00000012005)	PDE7A (ENSABRG00000012018)
Duck	MODERN SPECIES	10	MOS (ENSAPLG00000001007) #8	PLAG1 (ENSAPLG00000007090) #9	CHCHD7 (ENSAPLG00000023206) #10	SDR16C5 (ENSAPLG00000007237) #11	PENK (ENSAPLG00000007565) #13	BPNT2 (ENSAPLG00000007571) #14	FAM110B (ENSAPLG00000007581) #15	UBXN2B (ENSAPLG00000007644) #16	CYP7A1 (ENSAPLG00000008062) #17	SDCBP (ENSAPLG00000008427) #18	NSMAF (ENSAPLG00000008911) #19	TOX (ENSAPLG00000009552) #20	ENSAPLG00000020614	ENSAPLG00000019251	CA8 (ENSAPLG00000005583) #21	RAB2A (ENSAPLG00000005615) #22	CHD7 (ENSAPLG00000005873) #23	CLVS1 (ENSAPLG00000006781) #24	ASPH (ENSAPLG00000006796) #25	NKAIN3 (ENSAPLG00000024234)	ENSAPLG00000021204	GGH (ENSAPLG00000010846)	TTPA (ENSAPLG00000025244)	YTHDF3 (ENSAPLG00000011329)	ENSAPLG00000030747	ENSAPLG00000029880	CYP7B1 (ENSAPLG00000011556) ##17	ARMC1 (ENSAPLG00000013027)	MTFR1 (ENSAPLG00000002927)	ENSAPLG00000022620	ENSAPLG00000031190
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484.b	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Japanese quail	MODERN SPECIES	11	RPS20 (ENSCJPG00005010404) ##7	MOS (ENSCJPG00005010406) #8	PLAG1 (ENSCJPG00005010407) #9	CHCHD7 (ENSCJPG00005010408) #10	ENSCJPG00005010409 #11	ENSCJPG00005010410 #11	PENK (ENSCJPG00005010411) #13	BPNT2 (ENSCJPG00005010415) #14	FAM110B (ENSCJPG00005010421) #15	UBXN2B (ENSCJPG00005010423) #16	CYP7A1 (ENSCJPG00005010424) #17	SDCBP (ENSCJPG00005010425) #18	NSMAF (ENSCJPG00005010426) #19	TOX (ENSCJPG00005010427) #20	CA8 (ENSCJPG00005010429) #21	RAB2A (ENSCJPG00005010430) #22	CHD7 (ENSCJPG00005010431) #23	CLVS1 (ENSCJPG00005011531) #24	ASPH (ENSCJPG00005011534) #25	NKAIN3 (ENSCJPG00005011554)	GGH (ENSCJPG00005011561)	TTPA (ENSCJPG00005011581)	YTHDF3 (ENSCJPG00005011583)	BHLHE22 (ENSCJPG00005011601)	CYP7B1 (ENSCJPG00005011602) ##17	ARMC1 (ENSCJPG00005011615)	MTFR1 (ENSCJPG00005011616)	PDE7A (ENSCJPG00005011623)	DNAJC5B (ENSCJPG00005011625)	TRIM55 (ENSCJPG00005011647)	CRH (ENSCJPG00005011650)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484.b	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00860000135574	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Chicken	MODERN SPECIES	11	RPS20 (ENSGALG00010004081) ##7	MOS (ENSGALG00010005635) #8	PLAG1 (ENSGALG00010004042) #9	CHCHD7 (ENSGALG00010003980) #10	SDR16C5 (ENSGALG00010003994) #11	ERD2L (ENSGALG00010004005) #11	PENK (ENSGALG00010003972) #13	BPNT2 (ENSGALG00010003454) #14	FAM110B (ENSGALG00010003472) #15	UBXN2B (ENSGALG00010003511) #16	CYP7A1 (ENSGALG00010003518) #17	SDCBP (ENSGALG00010002916) #18	NSMAF (ENSGALG00010002983) #19	TOX (ENSGALG00010003042) #20	CA8 (ENSGALG00010002685) #21	RAB2A (ENSGALG00010002760) #22	CHD7 (ENSGALG00010002626) #23	CLVS1 (ENSGALG00010003877) #24	ASPH (ENSGALG00010003960) #25	NKAIN3 (ENSGALG00010004006)	GGH (ENSGALG00010003063)	TTPA (ENSGALG00010003074)	YTHDF3 (ENSGALG00010003103)	ENSGALG00010004014	CYP7B1 (ENSGALG00010003006) ##17	ARMC1 (ENSGALG00010003121)	MTFR1 (ENSGALG00010003154)	PDE7A (ENSGALG00010004047)	DNAJC5B (ENSGALG00010004050)	ENSGALG00010004579	TRIM55 (ENSGALG00010004122)
Turkey	MODERN SPECIES	22	RPS20 (ENSMGAG00000010999) ##7	MOS (ENSMGAG00000011001) #8	PLAG1 (ENSMGAG00000011002) #9	CHCHD7 (ENSMGAG00000021415) #10	ENSMGAG00000011012 #11	ENSMGAG00000018048 #11	PENK (ENSMGAG00000011027) #13	BPNT2 (ENSMGAG00000011028) #14	FAM110B (ENSMGAG00000015836) #15	UBXN2B (ENSMGAG00000011031) #16	NSMAF (ENSMGAG00000011062) #19	CYP7A1 (ENSMGAG00000011038) #17	SDCBP (ENSMGAG00000011045) #18	TOX (ENSMGAG00000011079) #20	CA8 (ENSMGAG00000011083) #21	RAB2A (ENSMGAG00000011087) #22	CHD7 (ENSMGAG00000011092) #23	CLVS1 (ENSMGAG00000011133) #24	ASPH (ENSMGAG00000011139) #25	ENSMGAG00000011155	GGH (ENSMGAG00000011159)	TTPA (ENSMGAG00000011166)	YTHDF3 (ENSMGAG00000011168)	ENSMGAG00000021911	ENSMGAG00000011354	ENSMGAG00000018382	ENSMGAG00000011317	ENSMGAG00000019497	ENSMGAG00000019631	ENSMGAG00000020712	ENSMGAG00000011277
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005016333	RPS20 (ENSCPRG00005016338) ##7	c-mos (ENSCPRG00005016349) #8	PLAG1 (ENSCPRG00005016352) #9	CHCHD7 (ENSCPRG00005016355) #10	SDR16C5 (ENSCPRG00005016362) #11	PENK (ENSCPRG00005016370) #13	BPNT2 (ENSCPRG00005016382) #14	FAM110B (ENSCPRG00005016391) #15	UBXN2B (ENSCPRG00005016399) #16	CYP7A1 (ENSCPRG00005016404) #17	SDCBP (ENSCPRG00005016406) #18	NSMAF (ENSCPRG00005016411) #19	TOX (ENSCPRG00005016417) #20	CA8 (ENSCPRG00005016420) #21	RAB2A (ENSCPRG00005016436) #22	CHD7 (ENSCPRG00005016680) #23	ENSCPRG00005017539 #24	ENSCPRG00005017545 #24	ASPH (ENSCPRG00005017558) #25	NKAIN3 (ENSCPRG00005017596)	GGH (ENSCPRG00005017603)	TTPA (ENSCPRG00005017609)	YTHDF3 (ENSCPRG00005017611)	CYP7B1 (ENSCPRG00005017628) ##17	ARMC1 (ENSCPRG00005017640)	MTFR1 (ENSCPRG00005017643)	PDE7A (ENSCPRG00005017653)	DNAJC5B (ENSCPRG00005017666)	TRIM55 (ENSCPRG00005017670)	ADHFE1 (ENSCPRG00005017676)
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a.i	ENSGT00490000043388.b.a.j	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Testudinoidea	ANCESTRAL SPECIES	28				ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a.i	ENSGT00490000043388.b.a.j	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Testudinidae	ANCESTRAL SPECIES	34					ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00960000189175	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a.i	ENSGT00490000043388.b.a.j	ENSGT00940000159203	ENSGT00960000189659	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658
Goode s thornscrub tortoise	MODERN SPECIES	11	MOS (ENSGEVG00005000067) #8	PLAG1 (ENSGEVG00005000082) #9	CHCHD7 (ENSGEVG00005000113) #10	ENSGEVG00005000133 #11	ENSGEVG00005000173 #11	ENSGEVG00005000298	PENK (ENSGEVG00005000315) #13	BPNT2 (ENSGEVG00005000327) #14	FAM110B (ENSGEVG00005000348) #15	UBXN2B (ENSGEVG00005000379) #16	CYP7A1 (ENSGEVG00005000435) #17	ENSGEVG00005000469 #18	NSMAF (ENSGEVG00005000503) #19	TOX (ENSGEVG00005000551) #20	CA8 (ENSGEVG00005000613) #21	RAB2A (ENSGEVG00005000672) #22	CHD7 (ENSGEVG00005000740) #23	ENSGEVG00005000862 #24	ENSGEVG00005000889 #24	ASPH (ENSGEVG00005000976) #25	NKAIN3 (ENSGEVG00005001111)	ENSGEVG00005001127	ENSGEVG00005001150	ENSGEVG00005001182	TTPA (ENSGEVG00005001227)	YTHDF3 (ENSGEVG00005001248)	BHLHE22 (ENSGEVG00005001273)	CYP7B1 (ENSGEVG00005001281) ##17	ARMC1 (ENSGEVG00005001303)	MTFR1 (ENSGEVG00005001320)	PDE7A (ENSGEVG00005001363)
Abingdon island giant tortoise	MODERN SPECIES	223																RAB2A (ENSCABG00000009883) #22	ENSCABG00000009887	ENSCABG00000009889 #23	ENSCABG00000009890 #23	ENSCABG00000009892 #24	ENSCABG00000009893	ENSCABG00000009895 #24	ENSCABG00000009899
Emydidae	ANCESTRAL SPECIES	51				ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00940000163618.d #12	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b.e #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A.ib #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a.i	ENSGT00490000043388.b.a.j	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a
Three-toed box turtle	MODERN SPECIES	24	RPS20 (ENSTMTG00000013968) ##7	MOS (ENSTMTG00000013985) #8	PLAG1 (ENSTMTG00000013993) #9	CHCHD7 (ENSTMTG00000014001) #10	SDR16C5 (ENSTMTG00000014011) #11	ENSTMTG00000014032 #12	PENK (ENSTMTG00000014056) #13	BPNT2 (ENSTMTG00000014066) #14	FAM110B (ENSTMTG00000014078) #15	ENSTMTG00000014083 #16	CYP7A1 (ENSTMTG00000014097) #17	ENSTMTG00000014147 #18	NSMAF (ENSTMTG00000014171) #19	TOX (ENSTMTG00000014233) #20	CA8 (ENSTMTG00000014252) #21	RAB2A (ENSTMTG00000014296) #22	CHD7 (ENSTMTG00000014799) #23	ENSTMTG00000020594 #24	ENSTMTG00000020601 #24	ASPH (ENSTMTG00000020607) #25	ENSTMTG00000020614 #25	NKAIN3 (ENSTMTG00000020650)	ENSTMTG00000020655	ENSTMTG00000020665	TTPA (ENSTMTG00000020690)	YTHDF3 (ENSTMTG00000020701)	ENSTMTG00000020706	CYP7B1 (ENSTMTG00000020711) ##17	ARMC1 (ENSTMTG00000020715)	MTFR1 (ENSTMTG00000020722)	PDE7A (ENSTMTG00000020732)
painted turtle	MODERN SPECIES	7															CA8 (ENSCPBG00000023261) #21	RAB2A (ENSCPBG00000023254) #22	CHD7 (ENSCPBG00000021517) #23	CLVS1 (ENSCPBG00000021443) #24	ASPH (ENSCPBG00000021423) #25	NKAIN3 (ENSCPBG00000021419)	ENSCPBG00000021416	ENSCPBG00000021409	TTPA (ENSCPBG00000021407)	YTHDF3 (ENSCPBG00000021405)	BHLHE22 (ENSCPBG00000021399)	CYP7B1 (ENSCPBG00000021397) ##17	ARMC1 (ENSCPBG00000021391)	MTFR1 (ENSCPBG00000021390)	PDE7A (ENSCPBG00000021386)	DNAJC5B (ENSCPBG00000021381)	TRIM55 (ENSCPBG00000021378)
Chinese turtle	MODERN SPECIES	333										UBXN2B (ENSPSIG00000006447) #16	CYP7A1 (ENSPSIG00000007385) #17	SDCBP (ENSPSIG00000008514) #18	NSMAF (ENSPSIG00000010760) #19	TOX (ENSPSIG00000011141) #20	CA8 (ENSPSIG00000011174) #21	RAB2A (ENSPSIG00000011994) #22	CHD7 (ENSPSIG00000012003) #23	CLVS1 (ENSPSIG00000014737) #24	ENSPSIG00000015090 #25	ENSPSIG00000015476 #25	NKAIN3 (ENSPSIG00000015661)	ENSPSIG00000001808	GGH (ENSPSIG00000015668)	TTPA (ENSPSIG00000015730)	ENSPSIG00000015849	YTHDF3 (ENSPSIG00000015861)	CYP7B1 (ENSPSIG00000016025) ##17	ENSPSIG00000001810
Anura	ANCESTRAL SPECIES	1	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00990000212811	ENSGT00950000183056.B.b #15	ENSGT00520000055567.a.a.b #16	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.a	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000006849	FAM110B (ENSLLEG00000006829) #15	ENSLLEG00000006819	UBXN2B (ENSLLEG00000006763) #16	ENSLLEG00000006592 #17	ENSLLEG00000006537 #17	ENSLLEG00000006498 #18	NSMAF (ENSLLEG00000006195) #19	ENSLLEG00000006171	TOX (ENSLLEG00000006047) #20	ENSLLEG00000005996	ENSLLEG00000005979	ENSLLEG00000005970	ENSLLEG00000005953	CA8 (ENSLLEG00000005862) #21	ENSLLEG00000005572 #22	ENSLLEG00000005526	ENSLLEG00000005511	ENSLLEG00000005501	ENSLLEG00000005489	CHD7 (ENSLLEG00000005279) #23	ENSLLEG00000005199	ENSLLEG00000021930	ENSLLEG00000021907	CLVS1 (ENSLLEG00000021672) #24	ASPH (ENSLLEG00000020320) #25	ENSLLEG00000020206	NKAIN3 (ENSLLEG00000020083)	GGH (ENSLLEG00000019797)	TTPA (ENSLLEG00000019645)	YTHDF3 (ENSLLEG00000019561)
Leishan spiny toad	MODERN SPECIES	5	TRPC6 (ENSLLEG00000002306)	ENSLLEG00000002445	ANGPTL5 (ENSLLEG00000002451)	ENSLLEG00000002506	ENSLLEG00000002673	ENSLLEG00000002692	ENSLLEG00000002698	ENSLLEG00000002712	ENSLLEG00000002722	ENSLLEG00000002733	ENSLLEG00000002743	ENSLLEG00000002753	ENSLLEG00000002762	P4HA3 (ENSLLEG00000002785)	PPME1 (ENSLLEG00000002870)	ENSLLEG00000002978 #22	RPL31 (ENSLLEG00000003035)	KCNE3 (ENSLLEG00000003056)	LIPT2 (ENSLLEG00000003081)	ENSLLEG00000003101	ENSLLEG00000003107	CHRDL2 (ENSLLEG00000003113)	ENSLLEG00000003139	RNF169 (ENSLLEG00000003192)	XRRA1 (ENSLLEG00000003211)	ENSLLEG00000003281	NEU3 (ENSLLEG00000003294)	ENSLLEG00000003327	ENSLLEG00000003335	ENSLLEG00000003345	ENSLLEG00000003395
Frog	MODERN SPECIES	6	sdr16c5 (ENSXETG00000005655) #11	penk (ENSXETG00000005657) #13	bpnt2 (ENSXETG00000005659) #14	ENSXETG00000041916	ENSXETG00000043018	fam110b (ENSXETG00000005660) #15	ubxn2b (ENSXETG00000039040) #16	cyp7a1 (ENSXETG00000005661) #17	sdcbp (ENSXETG00000005663) #18	nsmaf (ENSXETG00000026005) #19	ENSXETG00000041882	tox (ENSXETG00000020167) #20	ENSXETG00000047802	ENSXETG00000045851	ca8 (ENSXETG00000020174) #21	rab2a (ENSXETG00000020178) #22	chd7 (ENSXETG00000026004) #23	clvs1 (ENSXETG00000021635) #24	asph (ENSXETG00000021644) #25	ENSXETG00000047149	nkain3 (ENSXETG00000021651)	mcmdc2 (ENSXETG00000021652)	ggh (ENSXETG00000042590)	ttpa (ENSXETG00000021656)	ENSXETG00000044598	ythdf3 (ENSXETG00000021659)	bhlhe22 (ENSXETG00000045162)	cyp7b1 (ENSXETG00000024529) ##17	armc1 (ENSXETG00000020281)	mtfr1 (ENSXETG00000040460)	pde7a (ENSXETG00000020283)
Coelacanth	MODERN SPECIES	1038															CA8 (ENSLACG00000010654) #21	RAB2A (ENSLACG00000012521) #22
Actinopterygii	ANCESTRAL SPECIES	4	ENSGT00940000158011	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.b	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a	ENSGT00940000154473.a
Reedfish	MODERN SPECIES	14	mos (ENSECRG00000005060) #8	plag1 (ENSECRG00000005066) #9	chchd7 (ENSECRG00000005072) #10	sdr16c5b (ENSECRG00000005084) #11	penka (ENSECRG00000005097) #13	ENSECRG00000005109	BPNT2 (ENSECRG00000005120) #14	fam110b (ENSECRG00000005125) #15	cyp7a1 (ENSECRG00000005130) #17	ENSECRG00000005146 #17	ENSECRG00000005154	SDCBP (ENSECRG00000005162) #18	NSMAF (ENSECRG00000005183) #19	tox (ENSECRG00000005223) #20	ca8 (ENSECRG00000005237) #21	rab2a (ENSECRG00000005260) #22	CHD7 (ENSECRG00000005307) #23	CLVS1 (ENSECRG00000005336) #24	ASPH (ENSECRG00000005384) #25	NKAIN3 (ENSECRG00000005438)	ggh (ENSECRG00000005459)	ttpa (ENSECRG00000005486)	ythdf3 (ENSECRG00000005514)	bhlhe22 (ENSECRG00000005539)	armc1 (ENSECRG00000005544)	mtfr1 (ENSECRG00000005554)	pde7a (ENSECRG00000005574)	DNAJC5B (ENSECRG00000005591)	trim55b (ENSECRG00000005601)	crhb (ENSECRG00000005610)	rrs1 (ENSECRG00000005614)
Neopterygii	ANCESTRAL SPECIES	40	ENSGT00940000158011	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731 #11	ENSGT00950000183149.A #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000159947 #24	ENSGT00940000156304 #25	ENSGT00940000161484	ENSGT00490000043388.b.b	ENSGT00940000159203	ENSGT00940000158777	ENSGT00940000162962	ENSGT00940000153141.B.b ##17	ENSGT00390000014100	ENSGT00950000183215.c.a.b	ENSGT00940000157658	ENSGT00940000154473.a	ENSGT00940000159294	ENSGT00940000154004.a
Spotted gar	MODERN SPECIES	675	zgc:56231 (ENSLOCG00000005434)	RPS20 (ENSLOCG00000005417) ##7	mos (ENSLOCG00000017815) #8	plag1 (ENSLOCG00000005402) #9	chchd7 (ENSLOCG00000005393) #10	sdr16c5b (ENSLOCG00000005373) #11	penka (ENSLOCG00000005341) #13	BPNT2 (ENSLOCG00000005325) #14	cyp7a1 (ENSLOCG00000005305) #17	cyp7a1 (ENSLOCG00000005289) #17	ENSLOCG00000005259 #17	SDCBP (ENSLOCG00000005245) #18	NSMAF (ENSLOCG00000005188) #19	tox (ENSLOCG00000005171) #20	ca8 (ENSLOCG00000005132) #21	rab2a (ENSLOCG00000005108) #22	CHD7 (ENSLOCG00000005062) #23	CLVS1 (ENSLOCG00000005043) #24	ASPH (ENSLOCG00000005026) #25	ENSLOCG00000005010 #25	NKAIN3 (ENSLOCG00000004986)	ggh (ENSLOCG00000004962)	ttpa (ENSLOCG00000004948)	ythdf3 (ENSLOCG00000004932)	bhlhe22 (ENSLOCG00000017814)	CYP7B1 (ENSLOCG00000004895) ##17	armc1 (ENSLOCG00000004869)	mtfr1 (ENSLOCG00000004859)	pde7a (ENSLOCG00000004815)	crhb (ENSLOCG00000017813)	trim55b (ENSLOCG00000004781)
Osteoglossocephalai	ANCESTRAL SPECIES	139	ENSGT00940000158011	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731.q.a #11	ENSGT00950000183149.A.e #13	ENSGT00940000160216 #14	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT01010000223470	ENSGT00940000159203
Osteoglossiformes	ANCESTRAL SPECIES	29	ENSGT00940000158011.b	ENSGT00940000164689	ENSGT00390000003248.b ##7	ENSGT00940000160233 #8	ENSGT00940000159246 #9	ENSGT00390000001029 #10	ENSGT00940000156731.q.a #11	ENSGT00950000183149.A.e #13	ENSGT00950000183056.B.b.m #15	ENSGT00940000153141.B.a.i.b #17	ENSGT00940000153141.B.a.j #17	ENSGT00940000154502 #18	ENSGT00940000155059 #19	ENSGT00940000159497.a #20	ENSGT00940000158863.n #21	ENSGT00940000153886.a.b #22	ENSGT01010000223470	ENSGT00940000159203	ENSGT00940000153141.B.b ##17	ENSGT00390000014100.l	ENSGT00940000157658	ENSGT00940000159294	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a.g	ENSGT00390000005213	ENSGT00940000157709	ENSGT00390000002854	ENSGT00940000153776.a.a.m	ENSGT00940000162447.b.b	ENSGT00390000015084.c.a	ENSGT00940000157108
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	22	CHMP5 (ENSSFOG00015032141)	atp6v1h (ENSSFOG00015001452)	ENSSFOG00015033140	ENSSFOG00015024407	xkr4 (ENSSFOG00015001371)	TMEM68 (ENSSFOG00015001324)	TGS1 (ENSSFOG00015001308)	lyn (ENSSFOG00015014741)	sdr16c5a (ENSSFOG00015001258) #11	penka (ENSSFOG00015001210) #13	bpnt2 (ENSSFOG00015032506)	fam110b (ENSSFOG00015001157) #15	cyp7a1 (ENSSFOG00015000973) #17	tox (ENSSFOG00015032106) #20	ENSSFOG00015000896 #21	ENSSFOG00015031159 #22	ENSSFOG00015000834	ttpa (ENSSFOG00015000822)	CYP7B1 (ENSSFOG00015000809) ##17	ARMC1 (ENSSFOG00015000765)	PDE7A (ENSSFOG00015000755)	trim55a (ENSSFOG00015000719)	ENSSFOG00015000733	adhfe1 (ENSSFOG00015000665)	ENSSFOG00015000651	C8orf34 (ENSSFOG00015000519)	LACTB2 (ENSSFOG00015000508)	trpa1a (ENSSFOG00015000259)	ENSSFOG00015031519	rpl7 (ENSSFOG00015000158)	rdh10b (ENSSFOG00015000134)
Asian bonytongue	MODERN SPECIES	24	RPS20 (ENSSFOG00015025294) ##7	mos (ENSSFOG00015028395) #8	plag1 (ENSSFOG00015026209) #9	chchd7 (ENSSFOG00015014845) #10	sdr16c5b (ENSSFOG00015014851) #11	penkb (ENSSFOG00015029827) #13	BPNT2 (ENSSFOG00015033264) #14	FAM110B (ENSSFOG00015030450) #15	cyp7a1 (ENSSFOG00015014882) #17	ENSSFOG00015014890 #17	SDCBP (ENSSFOG00015014899) #18	NSMAF (ENSSFOG00015014926) #19	TOX (ENSSFOG00015015013) #20	ENSSFOG00015031756	ca8 (ENSSFOG00015015024) #21	rab2a (ENSSFOG00015028868) #22	CHD7 (ENSSFOG00015015077) #23	CLVS1 (ENSSFOG00015025947) #24	ASPH (ENSSFOG00015015190) #25	NKAIN3 (ENSSFOG00015031371)	ggh (ENSSFOG00015015417)	ythdf3 (ENSSFOG00015015445)	bhlhe22 (ENSSFOG00015015519)	armc1 (ENSSFOG00015030119)	mtfr1 (ENSSFOG00015028733)	pde7a (ENSSFOG00015027409)	DNAJC5B (ENSSFOG00015015659)	trim55b (ENSSFOG00015027012)	crhb (ENSSFOG00015028112)	rrs1 (ENSSFOG00015032123)	ENSSFOG00015014515
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	240	OPRK1 (ENSPKIG00000005182)	atp6v1h (ENSPKIG00000005242)	rgs20 (ENSPKIG00000005342)	ENSPKIG00000005360	ENSPKIG00000005369	xkr4 (ENSPKIG00000005387)	tmem68 (ENSPKIG00000005404)	TGS1 (ENSPKIG00000005454)	sdr16c5a (ENSPKIG00000005543) #11	penka (ENSPKIG00000005567) #13	BPNT2 (ENSPKIG00000005646) #14	fam110b (ENSPKIG00000005669) #15	cyp7a1 (ENSPKIG00000005680) #17	tox (ENSPKIG00000005693) #20	ENSPKIG00000005715 #21	ENSPKIG00000005764 #22	ENSPKIG00000005805 #24	ENSPKIG00000005835 #25	ENSPKIG00000005871
P. kingsleyae	MODERN SPECIES	165	zgc:56231 (ENSPKIG00000010531)	RPS20 (ENSPKIG00000010499) ##7	plag1 (ENSPKIG00000010471) #9	chchd7 (ENSPKIG00000010440) #10	sdr16c5b (ENSPKIG00000010405) #11	penkb (ENSPKIG00000010388) #13	FAM110B (ENSPKIG00000010377) #15	ENSPKIG00000010355	ENSPKIG00000010259	ENSPKIG00000010203	ENSPKIG00000010160 #17	SDCBP (ENSPKIG00000010118) #18	NSMAF (ENSPKIG00000010003) #19	TOX (ENSPKIG00000009875) #20	ca8 (ENSPKIG00000009787) #21	rab2a (ENSPKIG00000009739) #22	CHD7 (ENSPKIG00000009637) #23	CLVS1 (ENSPKIG00000009601) #24	ENSPKIG00000009579 #25	ENSPKIG00000009528 #25	ENSPKIG00000009474	ENSPKIG00000009195	ENSPKIG00000009090	ENSPKIG00000009051	ENSPKIG00000009016	plxdc2b (ENSPKIG00000008966)	malrd1 (ENSPKIG00000008913)	ENSPKIG00000008885	ENSPKIG00000008871	ENSPKIG00000008684	SLC8B1 (ENSPKIG00000008531)
Clupeocephala	ANCESTRAL SPECIES	107	ENSGT00940000161095	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e	ENSGT00940000156731.q.b #11	ENSGT00950000183149.A.f #13	ENSGT00940000160216 #14	ENSGT00940000164879	ENSGT00940000156731.q.a #11	ENSGT00950000183149.A.e #13	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203
Euteleosteomorpha	ANCESTRAL SPECIES	353														ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00940000164519.c.a	ENSGT00940000155899.e.b
Acanthomorphata	ANCESTRAL SPECIES	250										ENSGT00940000156200.A	ENSGT01030000238371	ENSGT00940000154882	ENSGT00940000161826.B	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01040000241001	ENSGT00940000166547	ENSGT00940000159203	ENSGT00940000164519.c.a	ENSGT00940000155899.e.b	ENSGT00950000183149.A.f #13
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00390000014771.a	ENSGT00940000156700.d	ENSGT00940000156473.f.b	ENSGT00940000157657.c	ENSGT00940000164061.c.a	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000156200.A	ENSGT01030000238371	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01040000241001	ENSGT01010000223470	ENSGT00940000166547	ENSGT00940000159203	ENSGT00940000164519.c.a	ENSGT00940000155899.e.b	ENSGT00950000183149.A.f #13	ENSGT01040000240400.c.a.b.a.a.d	ENSGT00390000018710	ENSGT00940000153141.B.a #17	ENSGT00940000158610.d	ENSGT00940000157718.c	ENSGT00940000157704.a.a	ENSGT00390000012596.e
Pinecone sodierfish	MODERN SPECIES	8	RNF152 (ENSMMDG00005022935)	ENSMMDG00005022937	buc (ENSMMDG00005022941)	ENSMMDG00005022948	xkr4 (ENSMMDG00005022957)	tmem68 (ENSMMDG00005022958)	ENSMMDG00005022959	CNTNAP2 (ENSMMDG00005022967)	si:dkey-94e7.2 (ENSMMDG00005022987)	ENSMMDG00005022990	GPR141 (ENSMMDG00005022992)	mcm6l (ENSMMDG00005023013)	exoc3 (ENSMMDG00005023286)	ENSMMDG00005023290	ca8 (ENSMMDG00005023292) #21	rab2a (ENSMMDG00005010671) #22	CHD7 (ENSMMDG00005010740) #23	ENSMMDG00005011755	ttpa (ENSMMDG00005011761)	xpr1b (ENSMMDG00005011829)	ENSMMDG00005011833	tyw3 (ENSMMDG00005011835)	ENSMMDG00005011837	insra (ENSMMDG00005011859)	mfsd14a2 (ENSMMDG00005013508)	ENSMMDG00005013530	loxl5b (ENSMMDG00005013539)	nmrk2 (ENSMMDG00005013589)	ATCAY (ENSMMDG00005013598)	cplx4c (ENSMMDG00005013610)	rx2 (ENSMMDG00005013611)
Percomorphaceae	ANCESTRAL SPECIES	164													ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22
Tiger tail seahorse	MODERN SPECIES	167	ENSHCOG00000016158	atpsckmt (ENSHCOG00000016150)	ENSHCOG00000016142	crispld1b (ENSHCOG00000016113)	ENSHCOG00000016068	ENSHCOG00000000768	dusp12 (ENSHCOG00000015938)	ENSHCOG00000015913	odr4 (ENSHCOG00000015802)	dpydb (ENSHCOG00000015737)	ptbp2b (ENSHCOG00000015622)	cryz (ENSHCOG00000000404)	tox (ENSHCOG00000014473) #20	ENSHCOG00000014466	ca8 (ENSHCOG00000014450) #21	rab2a (ENSHCOG00000014428) #22	CHD7 (ENSHCOG00000014380) #23	DARS2 (ENSHCOG00000014226)	bpnt2 (ENSHCOG00000014204)	tmem68 (ENSHCOG00000014184)	ENSHCOG00000014161	blvra (ENSHCOG00000014153)	ENSHCOG00000014144	ENSHCOG00000014140	ENSHCOG00000014126	xrn1 (ENSHCOG00000014062)	ENSHCOG00000013992	cop1 (ENSHCOG00000013977)	ENSHCOG00000013891	ASTN1 (ENSHCOG00000013368)	brinp2 (ENSHCOG00000013326)
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000159432.C	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Tetraodontidae	ANCESTRAL SPECIES	58		ENSGT00940000154673.a.d.b	ENSGT00390000001801	ENSGT00940000154654.a.a	ENSGT00940000154499	ENSGT00940000164640	ENSGT00390000012596.e	ENSGT00940000157704.a.a	ENSGT00940000157718.c	ENSGT00940000158610.d	ENSGT00940000153304.C	ENSGT00940000156181.B	ENSGT00940000156304.c.b #25	ENSGT00940000159203	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159742.rb	ENSGT00940000156200.A	ENSGT00940000155161	ENSGT00940000165818	ENSGT00390000003140.A	ENSGT00940000158543	ENSGT00920000149161	ENSGT00670000098080	ENSGT00940000153167.B	ENSGT00510000049326.b.a	ENSGT00940000157139.b	ENSGT00940000158362
Fugu	MODERN SPECIES	14	cdh6 (ENSTRUG00000011839)	zgc:56556 (ENSTRUG00000012371)	ARPC5 (ENSTRUG00000012488)	rnf2 (ENSTRUG00000012510)	ENSTRUG00000012634	AGL (ENSTRUG00000012741)	ENSTRUG00000030605	ENSTRUG00000006446	ENSTRUG00000006277	ENSTRUG00000006024	tyw3 (ENSTRUG00000023563)	ENSTRUG00000028321	ENSTRUG00000025918 #25	ttpa (ENSTRUG00000033036)	ca8 (ENSTRUG00000004093) #21	rab2a (ENSTRUG00000030139) #22	CHD7 (ENSTRUG00000008632) #23	trnau1apb (ENSTRUG00000008608)	fitm1l (ENSTRUG00000008592)	ENSTRUG00000027440	ENSTRUG00000024658	ENSTRUG00000022223	ENSTRUG00000007758	lhx8a (ENSTRUG00000007669)	klhl20 (ENSTRUG00000007338)	brinp2 (ENSTRUG00000007120)	ASTN1 (ENSTRUG00000006204)	PAPPA2 (ENSTRUG00000005674)	cop1 (ENSTRUG00000005262)	xrn1 (ENSTRUG00000004895)	toe1 (ENSTRUG00000030325)
Tetraodon	MODERN SPECIES	26	jph1b (ENSTNIG00000003444)	blvra (ENSTNIG00000003445)	paxip1 (ENSTNIG00000003446)	ssr2 (ENSTNIG00000003448)	mhc1zka (ENSTNIG00000003449)	ENSTNIG00000003450	PCMTD2 (ENSTNIG00000003451)	ENSTNIG00000003461	ENSTNIG00000001346	orc4 (ENSTNIG00000003466)	ENSTNIG00000003467	FGD1 (ENSTNIG00000003468)	tbrg1 (ENSTNIG00000003469)	ENSTNIG00000003470	ENSTNIG00000003471	rab2a (ENSTNIG00000003472) #22	ppp2r1bb (ENSTNIG00000003473)	med29 (ENSTNIG00000003474)	mlf1 (ENSTNIG00000003475)	pex10 (ENSTNIG00000003476)	plch2a (ENSTNIG00000003477)	tpi1b (ENSTNIG00000003478)	ENSTNIG00000003479	ENSTNIG00000003480	RAB26 (ENSTNIG00000003481)	laptm4b (ENSTNIG00000003482)	rpl30 (ENSTNIG00000000674)	ENSTNIG00000003483	ENSTNIG00000005199	nr1h5 (ENSTNIG00000003487)	ENSTNIG00000003488
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Ballan wrasse	MODERN SPECIES	1	ENSLBEG00000019865	lhx8a (ENSLBEG00000019894)	ENSLBEG00000019966	myh7 (ENSLBEG00000020104)	myh7 (ENSLBEG00000020191)	myh7 (ENSLBEG00000020283)	myh7l (ENSLBEG00000020377)	fitm1l (ENSLBEG00000020467)	trnau1apb (ENSLBEG00000020480)	ENSLBEG00000020501	bpnt2 (ENSLBEG00000020531)	DARS2 (ENSLBEG00000020557)	cryz (ENSLBEG00000020627)	tox (ENSLBEG00000020684) #20	ca8 (ENSLBEG00000020742) #21	rab2a (ENSLBEG00000020796) #22	CHD7 (ENSLBEG00000020842) #23	ptbp2b (ENSLBEG00000020923)	dpydb (ENSLBEG00000021005)	odr4 (ENSLBEG00000021100)	TPR (ENSLBEG00000021132)	ENSLBEG00000021240	prg4a (ENSLBEG00000021270)	ENSLBEG00000021302	tyw3 (ENSLBEG00000021318)	ENSLBEG00000021345	ENSLBEG00000021367 #25	ttpa (ENSLBEG00000021427)
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Gilthead seabream	MODERN SPECIES	13	ENSSAUG00010022726	ENSSAUG00010022723	xpr1b (ENSSAUG00010022719)	ENSSAUG00010022715	ENSSAUG00010022713	ENSSAUG00010022456	ENSSAUG00010022450	dnai4 (ENSSAUG00010022448)	ENSSAUG00010022444	fam151a (ENSSAUG00010022443)	ENSSAUG00010022442	ACOT11 (ENSSAUG00010022426)	mrpl37 (ENSSAUG00010022412)	ENSSAUG00010022409	ca8 (ENSSAUG00010022407) #21	rab2a (ENSSAUG00010022405) #22	CHD7 (ENSSAUG00010022060) #23
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00990000203911	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
European seabass	MODERN SPECIES		ENSDLAG00005005622	ENSDLAG00005005631	myh7 (ENSDLAG00005024533)	myh7 (ENSDLAG00005005771)	myh7 (ENSDLAG00005029581)	myh7l (ENSDLAG00005002849)	fitm1l (ENSDLAG00005033982)	trnau1apb (ENSDLAG00005002423)	ENSDLAG00005002393	ENSDLAG00005002371	ENSDLAG00005001782	ENSDLAG00005027625	ENSDLAG00005032927	tox (ENSDLAG00005026957) #20	ca8 (ENSDLAG00005035106) #21	rab2a (ENSDLAG00005001631) #22	CHD7 (ENSDLAG00005001098) #23	ENSDLAG00005000666	ENSDLAG00005000398	odr4 (ENSDLAG00005006309)	ENSDLAG00005028037	prg4a (ENSDLAG00005000363)	dusp12 (ENSDLAG00005000361)	ENSDLAG00005026926	ENSDLAG00005000351	ENSDLAG00005000237	ENSDLAG00005000128	ENSDLAG00005027010	ENSDLAG00005000064	ENSDLAG00005000063	ENSDLAG00005000062
Large yellow croaker	MODERN SPECIES	481	fabp6 (ENSLCRG00005020676)	ENSLCRG00005020678	si:ch73-382f3.1 (ENSLCRG00005020680)	toe1 (ENSLCRG00005000204)	DNAH10 (ENSLCRG00005000278)	ENSLCRG00005000392	ENSLCRG00005000394	ENSLCRG00005000401	ankrd45 (ENSLCRG00005000403)	bpnt2 (ENSLCRG00005000409)	DARS2 (ENSLCRG00005000452)	cryz (ENSLCRG00005002576)	ENSLCRG00005002583	tox (ENSLCRG00005002586) #20	ca8 (ENSLCRG00005002590) #21	rab2a (ENSLCRG00005002596) #22	CHD7 (ENSLCRG00005002852) #23	ptbp2b (ENSLCRG00005008471)	dpydb (ENSLCRG00005013062)	odr4 (ENSLCRG00005013208)	TPR (ENSLCRG00005013257)	OLFML2B (ENSLCRG00005014488)	ENSLCRG00005014491	kifap3b (ENSLCRG00005014508)	PDC (ENSLCRG00005016278)	rab36 (ENSLCRG00005016286)	DEPDC5 (ENSLCRG00005016299)	mfsd12a (ENSLCRG00005016365)	csnk1g2a (ENSLCRG00005016436)	mrpl37 (ENSLCRG00005017194)	ACOT11 (ENSLCRG00005017196)
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b.h	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b.h	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Channel bull blenny	MODERN SPECIES	8	RPL5 (ENSCGOG00000015380)	dipk1aa (ENSCGOG00000015415)	mtf2 (ENSCGOG00000015417)	ccdc18 (ENSCGOG00000015421)	scinlb (ENSCGOG00000015469)	wls (ENSCGOG00000017242)	GNG12 (ENSCGOG00000017441)	gadd45aa (ENSCGOG00000017446)	CASK (ENSCGOG00000017478)	ankrd45 (ENSCGOG00000017913)	bpnt2 (ENSCGOG00000017915)	DARS2 (ENSCGOG00000017945)	cryz (ENSCGOG00000018381)	tox (ENSCGOG00000018389) #20	ca8 (ENSCGOG00000018396) #21	rab2a (ENSCGOG00000018412) #22	CHD7 (ENSCGOG00000018452) #23	ptbp2b (ENSCGOG00000018732)	dpydb (ENSCGOG00000019732)	TPR (ENSCGOG00000019998)	prg4a (ENSCGOG00000020036)	dusp12 (ENSCGOG00000020041)	ENSCGOG00000020047	ENSCGOG00000020050	ENSCGOG00000020051	mrpl37 (ENSCGOG00000020054)	ACOT11 (ENSCGOG00000020070)	ENSCGOG00000020422	atg10 (ENSCGOG00000020424)	fam110b (ENSCGOG00000020426) #15	ENSCGOG00000020427
Pike perch	MODERN SPECIES	240										DARS2 (ENSSLUG00000025262)	ENSSLUG00000025265	cryz (ENSSLUG00000025277)	ENSSLUG00000025283	mfsd12a (ENSSLUG00000025286)	ca8 (ENSSLUG00000025290) #21	rab2a (ENSSLUG00000025294) #22	CHD7 (ENSSLUG00000025341) #23	ptbp2b (ENSSLUG00000025445)	dpydb (ENSSLUG00000025481)	odr4 (ENSSLUG00000025519)	TPR (ENSSLUG00000025556)	dusp12 (ENSSLUG00000025580)	ENSSLUG00000025586	ENSSLUG00000025588	kifap3b (ENSSLUG00000025690)	PDC (ENSSLUG00000025736)	ENSSLUG00000025738	ENSSLUG00000025740	rab36 (ENSSLUG00000025743)	DEPDC5 (ENSSLUG00000025786)	mfsd12a (ENSSLUG00000025827)
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.p	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b.h	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00530000064112.b.a.b	ENSGT00940000161902.a.a	ENSGT00940000167284.m.a	ENSGT00940000167284.m.b	ENSGT01030000234613.a.a	ENSGT00940000166844
Lumpfish	MODERN SPECIES	8															ca8 (ENSCLMG00005015890) #21	rab2a (ENSCLMG00005015892) #22	CHD7 (ENSCLMG00005015903) #23	ENSCLMG00005016283	dpydb (ENSCLMG00005016399)	odr4 (ENSCLMG00005017463)	prg4a (ENSCLMG00005001360)	dusp12 (ENSCLMG00005001378)	ENSCLMG00005001397	ENSCLMG00005001451	ENSCLMG00005001582	ENSCLMG00005001744	ENSCLMG00005001747	exoc3 (ENSCLMG00005001755)	gad3 (ENSCLMG00005001849)	cahz (ENSCLMG00005006995)	ENSCLMG00005006998
Stickleback	MODERN SPECIES	2	rap2b (ENSGACG00000015009)	mbnl1 (ENSGACG00000015003)	ENSGACG00000014996	ENSGACG00000014993	klhl20 (ENSGACG00000014972)	lhx8a (ENSGACG00000014969)	myh7 (ENSGACG00000014960)	myh7l (ENSGACG00000014948)	fitm1l (ENSGACG00000014947)	trnau1apb (ENSGACG00000014944)	ankrd45 (ENSGACG00000014942)	bpnt2 (ENSGACG00000014929)	DARS2 (ENSGACG00000014921)	cryz (ENSGACG00000014919)	ca8 (ENSGACG00000014911) #21	rab2a (ENSGACG00000014905) #22	CHD7 (ENSGACG00000014897) #23	ptbp2b (ENSGACG00000014892)	dpydb (ENSGACG00000014875)	odr4 (ENSGACG00000014870)	ENSGACG00000014860	ENSGACG00000014857	prg4a (ENSGACG00000014855)	dusp12 (ENSGACG00000014849)	OLFML2B (ENSGACG00000014845)	ENSGACG00000014841	ENSGACG00000014839	dnajb6a (ENSGACG00000014834)	exoc3 (ENSGACG00000014816)	gad3 (ENSGACG00000014803)	ENSGACG00000014801
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000164640	ENSGT00940000154499	ENSGT00940000154654.a.a	ENSGT00390000001801	ENSGT00940000154673.a.d.b	ENSGT00940000154187.a.b.b	ENSGT00940000157512.k	ENSGT00940000153141.B.a #17	ENSGT00390000018710	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000157790	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000164640	ENSGT00940000154499	ENSGT00940000154654.a.a	ENSGT00390000001801	ENSGT00940000154673.a.d.b	ENSGT00940000154187.a.b.b	ENSGT00940000157512.k	ENSGT00940000153141.B.a #17	ENSGT00390000018710	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000157790	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000011277	ENSMAMG00000011300	CDH6 (ENSMAMG00000011319)	ENSMAMG00000011371	ENSMAMG00000011376	ENSMAMG00000011391	CDH18 (ENSMAMG00000011430)	ENSMAMG00000027555 #17	ENSMAMG00000011474	ENSMAMG00000011481	ENSMAMG00000011486	ENSMAMG00000011494	tox (ENSMAMG00000011519) #20	ENSMAMG00000024843	ca8 (ENSMAMG00000011532) #21	rab2a (ENSMAMG00000011549) #22	CHD7 (ENSMAMG00000011569) #23	ENSMAMG00000011582	ENSMAMG00000011621	ENSMAMG00000011672	odr4 (ENSMAMG00000011684)	ENSMAMG00000011784	prg4a (ENSMAMG00000011941)	ENSMAMG00000011975	ENSMAMG00000012018	ENSMAMG00000012052	ENSMAMG00000012070	ENSMAMG00000012124	ENSMAMG00000012153	ENSMAMG00000012174	trnau1apb (ENSMAMG00000012192)
Anabantoidei	ANCESTRAL SPECIES	30	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000153141.B.a #17	ENSGT00390000018710	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000157790	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b
Climbing perch	MODERN SPECIES	8	myh7 (ENSATEG00000001704)	myh7 (ENSATEG00000001888)	myh7l (ENSATEG00000002051)	ENSATEG00000002190	ENSATEG00000002196	ENSATEG00000002202 #17	ENSATEG00000002232	ENSATEG00000002233	ENSATEG00000002251	ENSATEG00000002262	ENSATEG00000002270	ENSATEG00000002313	tox (ENSATEG00000002446) #20	ca8 (ENSATEG00000025910) #21	ca8 (ENSATEG00000028855) #21	rab2a (ENSATEG00000002553) #22	CHD7 (ENSATEG00000002590) #23	ENSATEG00000002722	ENSATEG00000002731	odr4 (ENSATEG00000002841)	ENSATEG00000002851	dusp12 (ENSATEG00000003117)	ENSATEG00000003154	ENSATEG00000003164	ENSATEG00000003176	ENSATEG00000003309	ENSATEG00000003368	ENSATEG00000003390	ENSATEG00000003538	ENSATEG00000003877	ENSATEG00000003741
Siamese fighting fish	MODERN SPECIES	8	ENSBSLG00000013091	ENSBSLG00000011415	ENSBSLG00000009162	myh7l (ENSBSLG00000007956)	fitm1l (ENSBSLG00000007861)	trnau1apb (ENSBSLG00000007840)	cyp7a1 (ENSBSLG00000007740) #17	TMEM70 (ENSBSLG00000007675)	ENSBSLG00000007672	bpnt2 (ENSBSLG00000007667)	DARS2 (ENSBSLG00000007032)	cryz (ENSBSLG00000006791)	cryz (ENSBSLG00000006699)	tox (ENSBSLG00000006637) #20	ca8 (ENSBSLG00000006568) #21	rab2a (ENSBSLG00000006404) #22	CHD7 (ENSBSLG00000006021) #23	ptbp2b (ENSBSLG00000005965)	pgap6 (ENSBSLG00000005953)	rgs11 (ENSBSLG00000005358)	ints15 (ENSBSLG00000005208)	ENSBSLG00000005133	ENSBSLG00000004889
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000164640	ENSGT00940000154499	ENSGT00940000154654.a.a	ENSGT00390000001801	ENSGT00940000154673.a.d.b	ENSGT00940000154187.a.b.b	ENSGT00940000157512.k	ENSGT00940000153141.B.a #17	ENSGT00390000018710	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000157790	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C
Carangaria_A	ANCESTRAL SPECIES	2															ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159846.a.a.c	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C
Seriola	ANCESTRAL SPECIES	129	ENSGT00940000157139.b	ENSGT01050000244838.B.a	ENSGT00510000049326.b.a	ENSGT00940000167820	ENSGT00940000153167.B	ENSGT00390000000715	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000157790	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896
Greater amberjack	MODERN SPECIES	264	fabp6 (ENSSDUG00000013182)	elovl8a (ENSSDUG00000013211)	ENSSDUG00000013249	si:ch73-382f3.1 (ENSSDUG00000013266)	toe1 (ENSSDUG00000013278)	tmem53 (ENSSDUG00000013305)	odr4 (ENSSDUG00000013326)	TPR (ENSSDUG00000013362)	prg4a (ENSSDUG00000013442)	dusp12 (ENSSDUG00000013512)	OLFML2B (ENSSDUG00000013527)	ENSSDUG00000013543	kifap3b (ENSSDUG00000013588)	PDC (ENSSDUG00000013654)	kcnh2a (ENSSDUG00000013672)	rab2a (ENSSDUG00000013724) #22	CHD7 (ENSSDUG00000013773) #23	ptbp2b (ENSSDUG00000013833)	dpydb (ENSSDUG00000013875)	ca8 (ENSSDUG00000013961) #21
Yellowtail amberjack	MODERN SPECIES	2655	zswim5 (ENSSLDG00000021843)	fabp6 (ENSSLDG00000021872)	elovl8a (ENSSLDG00000021946)	ENSSLDG00000021958	si:ch73-382f3.1 (ENSSLDG00000021969)	toe1 (ENSSLDG00000021979)	tmem53 (ENSSLDG00000021988)	odr4 (ENSSLDG00000021997)	TPR (ENSSLDG00000022063)	prg4a (ENSSLDG00000022384)	dusp12 (ENSSLDG00000022399)	OLFML2B (ENSSLDG00000022429)	kifap3b (ENSSLDG00000022470)	PDC (ENSSLDG00000022509)	ENSSLDG00000022532	rab2a (ENSSLDG00000022555) #22	CHD7 (ENSSLDG00000022595) #23	ENSSLDG00000022663 #23
Barramundi perch	MODERN SPECIES	621															ca8 (ENSLCAG00010006786) #21	rab2a (ENSLCAG00010006774) #22
Pleuronectoidei	ANCESTRAL SPECIES	1											ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159846.a.a.c	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000159432.C
Turbot	MODERN SPECIES	19	ENSSMAG00000019214	ptf1a (ENSSMAG00000019201)	ENSSMAG00000019187	ENSSMAG00000019173	ENSSMAG00000017116 #15	ENSSMAG00000017143	ENSSMAG00000017152	ENSSMAG00000017219	ENSSMAG00000017220	ENSSMAG00000017302	ENSSMAG00000017469	ENSSMAG00000000796	ENSSMAG00000000876	tox (ENSSMAG00000000920) #20	ca8 (ENSSMAG00000000968) #21	rab2a (ENSSMAG00000001002) #22	CHD7 (ENSSMAG00000001030) #23	ENSSMAG00000001131	ENSSMAG00000001180	odr4 (ENSSMAG00000001266)	ENSSMAG00000001286	prg4a (ENSSMAG00000001410)	dusp12 (ENSSMAG00000001443)	ENSSMAG00000001466	ENSSMAG00000001488	ENSSMAG00000001503	ENSSMAG00000001596	ENSSMAG00000001718	ENSSMAG00000001738	ENSSMAG00000001745	myh7l (ENSSMAG00000002571)
Tongue sole	MODERN SPECIES	12	napgb (ENSCSEG00000016952)	PIEZO2 (ENSCSEG00000016977)	zgc:56556 (ENSCSEG00000017035)	cdh6 (ENSCSEG00000017063)	ENSCSEG00000017070	ENSCSEG00000017081	ENSCSEG00000017104	cyp7a1 (ENSCSEG00000017110) #17	ENSCSEG00000017114	TMEM70 (ENSCSEG00000017131)	bpnt2 (ENSCSEG00000017120)	DARS2 (ENSCSEG00000017136)	cryz (ENSCSEG00000017160)	tox (ENSCSEG00000017169) #20	ca8 (ENSCSEG00000017183) #21	rab2a (ENSCSEG00000017211) #22	CHD7 (ENSCSEG00000017886) #23	ptbp2b (ENSCSEG00000017942)	dpydb (ENSCSEG00000017980)	odr4 (ENSCSEG00000018012)	TPR (ENSCSEG00000018077)	dusp12 (ENSCSEG00000018154)	ENSCSEG00000018165	ENSCSEG00000018169	kifap3b (ENSCSEG00000018181)	ENSCSEG00000018199	trnau1apb (ENSCSEG00000018215)	fitm1l (ENSCSEG00000018233)	myh7l (ENSCSEG00000018616)	myh7 (ENSCSEG00000020685)	myh7 (ENSCSEG00000020930)
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.a	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a
Oryzias	ANCESTRAL SPECIES	12	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.i	ENSGT00940000154805.b.g.e.b.d.j	ENSGT00940000154805.b.g.e.b.c.e	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.i	ENSGT00940000154805.b.g.e.b.d.j	ENSGT00940000154805.b.g.e.b.c.e	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a
Japanese Medaka HdrR	MODERN SPECIES	8	brinp2 (ENSORLG00000013117)	klhl20 (ENSORLG00000013145)	ENSORLG00000013156	ENSORLG00000030013	myh7 (ENSORLG00000006085)	myh7 (ENSORLG00000013177)	myh7 (ENSORLG00000013217)	vmhc (ENSORLG00000013244)	fitm1l (ENSORLG00000022118)	trnau1apb (ENSORLG00000013265)	bpnt2 (ENSORLG00000013302)	DARS2 (ENSORLG00000013328)	cryz (ENSORLG00000013362)	tox (ENSORLG00000013382) #20	ca8 (ENSORLG00000013410) #21	rab2a (ENSORLG00000013432) #22	CHD7 (ENSORLG00000013492) #23	ptbp2b (ENSORLG00000013557)	dpydb (ENSORLG00000013626)	odr4 (ENSORLG00000013679)	ENSORLG00000013763	prg4a (ENSORLG00000013785)	dusp12 (ENSORLG00000013816)	ENSORLG00000013860	ENSORLG00000024886	kifap3b (ENSORLG00000013884)	pdca (ENSORLG00000013896)	ENSORLG00000013903	ENSORLG00000026451	TIMM44 (ENSORLG00000013927)	rab11bb (ENSORLG00000013938)
Chinese medaka	MODERN SPECIES	522	cop1 (ENSOSIG00000010060)	PAPPA2 (ENSOSIG00000010084)	ASTN1 (ENSOSIG00000010099)	brinp2 (ENSOSIG00000010296)	klhl20 (ENSOSIG00000010667)	lhx8a (ENSOSIG00000010960)	ENSOSIG00000010962	ENSOSIG00000010965	trnau1apb (ENSOSIG00000010967)	bpnt2 (ENSOSIG00000010968)	DARS2 (ENSOSIG00000010971)	cryz (ENSOSIG00000012019)	ENSOSIG00000012065	ENSOSIG00000012066	ca8 (ENSOSIG00000012067) #21	rab2a (ENSOSIG00000012069) #22	CHD7 (ENSOSIG00000012096) #23	ptbp2b (ENSOSIG00000012898)	dpydb (ENSOSIG00000017085)	TPR (ENSOSIG00000017181)	prg4a (ENSOSIG00000017475)	dusp12 (ENSOSIG00000017483)	OLFML2B (ENSOSIG00000017493)	ENSOSIG00000017499	kifap3b (ENSOSIG00000017501)	PDC (ENSOSIG00000017506)	ENSOSIG00000017515	TIMM44 (ENSOSIG00000017570)	ENSOSIG00000017572	rab11bb (ENSOSIG00000017577)	MARCHF2 (ENSOSIG00000017579)
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.i	ENSGT00940000154805.b.g.e.b.d.j	ENSGT00940000154805.b.g.e.b.c.e	ENSGT00940000159432.C	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.c.f	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00390000000051.b	ENSGT00940000163126.a.a	ENSGT00940000158995.b
Javanese ricefish	MODERN SPECIES	8	cop1 (ENSOJAG00000021386)	PAPPA2 (ENSOJAG00000021461)	ASTN1 (ENSOJAG00000021591)	brinp2 (ENSOJAG00000021725)	klhl20 (ENSOJAG00000021840)	lhx8a (ENSOJAG00000021967)	ENSOJAG00000021985	fitm1l (ENSOJAG00000022782)	trnau1apb (ENSOJAG00000022787)	bpnt2 (ENSOJAG00000022792)	DARS2 (ENSOJAG00000022820)	cryz (ENSOJAG00000022906)	ENSOJAG00000022952	tox (ENSOJAG00000022955) #20	ca8 (ENSOJAG00000022960) #21	rab2a (ENSOJAG00000022968) #22	ptbp2b (ENSOJAG00000009624)	odr4 (ENSOJAG00000011649)	TPR (ENSOJAG00000011778)	prg4a (ENSOJAG00000014427)	dusp12 (ENSOJAG00000014454)	OLFML2B (ENSOJAG00000014470)	ENSOJAG00000014489	kifap3b (ENSOJAG00000014522)	PDC (ENSOJAG00000014844)	ENSOJAG00000014871	TIMM44 (ENSOJAG00000014954)	rab11bb (ENSOJAG00000015481)	MARCHF2 (ENSOJAG00000015558)	slc25a36a (ENSOJAG00000015573)	spsb4a (ENSOJAG00000015580)
Indian medaka	MODERN SPECIES	10	myh7 (ENSOMEG00000016349)	myh7 (ENSOMEG00000016414)	ENSOMEG00000016447	ENSOMEG00000016465	ENSOMEG00000016480	ENSOMEG00000016494	ENSOMEG00000016506	fitm1l (ENSOMEG00000016517)	trnau1apb (ENSOMEG00000016531)	bpnt2 (ENSOMEG00000016552)	DARS2 (ENSOMEG00000016596)	cryz (ENSOMEG00000016621)	ENSOMEG00000016646	tox (ENSOMEG00000016675) #20	ca8 (ENSOMEG00000016716) #21	rab2a (ENSOMEG00000016752) #22	CHD7 (ENSOMEG00000016881) #23	ptbp2b (ENSOMEG00000016950)	dpydb (ENSOMEG00000017058)	odr4 (ENSOMEG00000017193)	ENSOMEG00000017267	prg4a (ENSOMEG00000017284)	ENSOMEG00000017301	dusp12 (ENSOMEG00000017380)	ENSOMEG00000017421	kifap3b (ENSOMEG00000017545)	PDC (ENSOMEG00000017603)	ENSOMEG00000017667	TIMM44 (ENSOMEG00000017767)	rab11bb (ENSOMEG00000017806)	MARCHF2 (ENSOMEG00000017834)
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.b	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.b	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095.hb	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b
NAME_4	ANCESTRAL SPECIES	9	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b	ENSGT00940000163126.a.a
Mummichog	MODERN SPECIES	2508	ENSFHEG00000001237	ENSFHEG00000001243	ENSFHEG00000001248	ENSFHEG00000001251	ENSFHEG00000001252	ENSFHEG00000000674	myh7l (ENSFHEG00000001258)	fitm1l (ENSFHEG00000001261)	trnau1apb (ENSFHEG00000001267)	ENSFHEG00000001270	bpnt2 (ENSFHEG00000001277)	DARS2 (ENSFHEG00000001285)	cryz (ENSFHEG00000001290)	tox (ENSFHEG00000001293) #20	ca8 (ENSFHEG00000001294) #21	rab2a (ENSFHEG00000001296) #22	CHD7 (ENSFHEG00000001311) #23	ptbp2b (ENSFHEG00000001320)	dpydb (ENSFHEG00000001338)	odr4 (ENSFHEG00000001356)	TPR (ENSFHEG00000001411)	prg4a (ENSFHEG00000001429)	dusp12 (ENSFHEG00000001434)	OLFML2B (ENSFHEG00000001437)	ENSFHEG00000001441	kifap3b (ENSFHEG00000001453)	PDC (ENSFHEG00000001461)
Sheepshead minnow	MODERN SPECIES	336					ENSCVAG00000018113	ENSCVAG00000018040	ENSCVAG00000018014	myh7l (ENSCVAG00000017990)	fitm1l (ENSCVAG00000017874)	trnau1apb (ENSCVAG00000017866)	bpnt2 (ENSCVAG00000017851)	DARS2 (ENSCVAG00000017840)	cryz (ENSCVAG00000017754)	tox (ENSCVAG00000000458) #20	ca8 (ENSCVAG00000017645) #21	rab2a (ENSCVAG00000017623) #22	CHD7 (ENSCVAG00000017584) #23	ptbp2b (ENSCVAG00000017566)	dpydb (ENSCVAG00000017559)	odr4 (ENSCVAG00000017457)	TPR (ENSCVAG00000017444)	dusp12 (ENSCVAG00000017311)	OLFML2B (ENSCVAG00000017284)	ENSCVAG00000017271	kifap3b (ENSCVAG00000017254)	PDC (ENSCVAG00000017136)	ENSCVAG00000017123	TIMM44 (ENSCVAG00000017060)	rab11bb (ENSCVAG00000017021)	MARCHF2 (ENSCVAG00000016997)	slc25a36a (ENSCVAG00000016985)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095.hb	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b
Poecilia	ANCESTRAL SPECIES	19	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095.hb	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b
NAME_6	ANCESTRAL SPECIES	204			ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095.hb	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b
Amazon molly	MODERN SPECIES	422	myh7 (ENSPFOG00000002250)	myh7 (ENSPFOG00000003432)	ENSPFOG00000024715	kifap3b (ENSPFOG00000003506)	PDC (ENSPFOG00000003868)	ENSPFOG00000022209	fitm1l (ENSPFOG00000003918)	trnau1apb (ENSPFOG00000003938)	ENSPFOG00000004047	bpnt2 (ENSPFOG00000004054)	DARS2 (ENSPFOG00000004144)	cryz (ENSPFOG00000004423)	ENSPFOG00000004532	tox (ENSPFOG00000004558) #20	ca8 (ENSPFOG00000004700) #21	rab2a (ENSPFOG00000004786) #22	CHD7 (ENSPFOG00000004891) #23	ptbp2b (ENSPFOG00000005646)	dpydb (ENSPFOG00000005785)	odr4 (ENSPFOG00000005978)	ENSPFOG00000006006	prg4a (ENSPFOG00000006768)	dusp12 (ENSPFOG00000006822)	ENSPFOG00000020348	OLFML2B (ENSPFOG00000006875)	ENSPFOG00000006956	CERS4 (ENSPFOG00000007021)	TIMM44 (ENSPFOG00000007215)	rab11bb (ENSPFOG00000024114)	MARCHF2 (ENSPFOG00000007476)	slc25a36a (ENSPFOG00000007512)
Sailfin molly	MODERN SPECIES	452													ENSPLAG00000023434	tox (ENSPLAG00000023423) #20	ca8 (ENSPLAG00000023418) #21	rab2a (ENSPLAG00000023374) #22	CHD7 (ENSPLAG00000023322) #23	ptbp2b (ENSPLAG00000023301)	dpydb (ENSPLAG00000023274)	odr4 (ENSPLAG00000023197)	TPR (ENSPLAG00000023158)	prg4a (ENSPLAG00000022823)	dusp12 (ENSPLAG00000000480)	ENSPLAG00000022764
Guppy	MODERN SPECIES	447	lhx8a (ENSPREG00000015235)	ENSPREG00000015212	ENSPREG00000015191	ENSPREG00000015162	ENSPREG00000015139	ENSPREG00000015128	myh7l (ENSPREG00000015068)	fitm1l (ENSPREG00000015046)	trnau1apb (ENSPREG00000015035)	ENSPREG00000015024	bpnt2 (ENSPREG00000015013)	DARS2 (ENSPREG00000014984)	cryz (ENSPREG00000014964)	tox (ENSPREG00000014941) #20	ca8 (ENSPREG00000014912) #21	rab2a (ENSPREG00000014888) #22	ENSPREG00000014870	ENSPREG00000014865	CHD7 (ENSPREG00000014744) #23	ptbp2b (ENSPREG00000014711)	dpydb (ENSPREG00000014688)	odr4 (ENSPREG00000014667)	ENSPREG00000014589	ENSPREG00000014558	prg4a (ENSPREG00000014538)	dusp12 (ENSPREG00000014521)	OLFML2B (ENSPREG00000014496)	ENSPREG00000014488	ENSPREG00000014481	kifap3b (ENSPREG00000014417)	PDC (ENSPREG00000014388)
Platyfish	MODERN SPECIES	20	ENSXMAG00000018469	myh7 (ENSXMAG00000025653)	myh7 (ENSXMAG00000006234)	myh7 (ENSXMAG00000026668)	ENSXMAG00000024786	myh7l (ENSXMAG00000018475)	fitm1l (ENSXMAG00000018505)	trnau1apb (ENSXMAG00000029918)	ENSXMAG00000018512	bpnt2 (ENSXMAG00000030062)	DARS2 (ENSXMAG00000018529)	cryz (ENSXMAG00000018549)	ENSXMAG00000024775	tox (ENSXMAG00000018560) #20	ca8 (ENSXMAG00000018565) #21	rab2a (ENSXMAG00000024267) #22	CHD7 (ENSXMAG00000018590) #23	ptbp2b (ENSXMAG00000018642)	dpydb (ENSXMAG00000018645)	odr4 (ENSXMAG00000018668)	TPR (ENSXMAG00000018684)	prg4a (ENSXMAG00000018717)	dusp12 (ENSXMAG00000018722)	ENSXMAG00000027606	OLFML2B (ENSXMAG00000018729)	ENSXMAG00000026629	kifap3b (ENSXMAG00000018739)	PDC (ENSXMAG00000018762)	ENSXMAG00000018778	CTXN1 (ENSXMAG00000026623)	TIMM44 (ENSXMAG00000018819)
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000159432.C	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000154805.b.g.e.b.d	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000154395.a.a.a.b.a	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT01030000234515.a.b.b.b	ENSGT00940000154412.C.c.a	ENSGT00390000000051.b
Turquoise killifish	MODERN SPECIES	1618	lhx8a (ENSNFUG00015024413)	MAP4 (ENSNFUG00015024394)	ENSNFUG00015024386	myh7 (ENSNFUG00015023780)	ENSNFUG00015023734	fitm1l (ENSNFUG00015023733)	trnau1apb (ENSNFUG00015023726)	ENSNFUG00015023723	IMPAD1 (ENSNFUG00015023721)	DARS2 (ENSNFUG00015023385)	cryz (ENSNFUG00015023329)	TOX (ENSNFUG00015023320) #20	ENSNFUG00015023317	CA8 (ENSNFUG00015023308) #21	ENSNFUG00015023305	RAB2A (ENSNFUG00015023295) #22	ENSNFUG00015023291	CHD7 (ENSNFUG00015023198) #23	PTBP2B (ENSNFUG00015023143)	dpydb (ENSNFUG00015023011)	C2H1ORF27 (ENSNFUG00015023001)	TPRA (ENSNFUG00015021506)	prg4a (ENSNFUG00015021413)	dusp12 (ENSNFUG00015021389)	OLFML2BB (ENSNFUG00015021376)	ENSNFUG00015021367	KIFAP3B (ENSNFUG00015020250)	OLPD-R (ENSNFUG00015020202)	CERS4 (ENSNFUG00015020174)	CTXN1 (ENSNFUG00015020167)	TIMM44 (ENSNFUG00015020126)
Mangrove rivulus	MODERN SPECIES	64								ENSKMAG00000010105	fitm1l (ENSKMAG00000010096)	trnau1apb (ENSKMAG00000010082)	bpnt2 (ENSKMAG00000010069)	DARS2 (ENSKMAG00000009973)	cryz (ENSKMAG00000009924)	tox (ENSKMAG00000009900) #20	ca8 (ENSKMAG00000009850) #21	rab2a (ENSKMAG00000009799) #22	CHD7 (ENSKMAG00000009724) #23	ptbp2b (ENSKMAG00000009644)	dpydb (ENSKMAG00000009544)	odr4 (ENSKMAG00000009510)	TPR (ENSKMAG00000009412)	dusp12 (ENSKMAG00000009384)	ENSKMAG00000009357	OLFML2B (ENSKMAG00000009333)	ENSKMAG00000009312	ENSKMAG00000009283	kifap3b (ENSKMAG00000009197)	PDC (ENSKMAG00000009178)	ENSKMAG00000009157	CERS4 (ENSKMAG00000009138)	CTXN1 (ENSKMAG00000009121)
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.a	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Pomacentridae	ANCESTRAL SPECIES	114	ENSGT00940000154805.b.g.e.b.d	ENSGT00990000203911.e.b	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.a	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882.h	ENSGT00940000154882.g	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Pomacentridae_A	ANCESTRAL SPECIES	122	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.e.a	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00390000008829	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882.h.b.b	ENSGT00940000154882.h.b.a	ENSGT00940000154882.h.a	ENSGT00940000154882.g	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b
Amphiprion	ANCESTRAL SPECIES	221										ENSGT00940000163093.a.b.d.a.b.a.c	ENSGT00940000154882.h.a	ENSGT00940000154882.g	ENSGT00940000161095	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b
Orange clownfish	MODERN SPECIES	1	rnf2 (ENSAPEG00000009843)	ARPC5 (ENSAPEG00000009894)	ENSAPEG00000009912	rnf2 (ENSAPEG00000009924)	ENSAPEG00000009971	ENSAPEG00000010005	ENSAPEG00000010015	zgc:152891 (ENSAPEG00000010027)	TRAPPC14 (ENSAPEG00000010063)	ENSAPEG00000010104	cryz (ENSAPEG00000010159)	cryz (ENSAPEG00000010220)	ENSAPEG00000010254	tox (ENSAPEG00000010263) #20	ca8 (ENSAPEG00000010277) #21	rab2a (ENSAPEG00000010294) #22	CHD7 (ENSAPEG00000010332) #23	ptbp2b (ENSAPEG00000010383)	dpydb (ENSAPEG00000010459)	odr4 (ENSAPEG00000010569)	TPR (ENSAPEG00000010592)	dusp12 (ENSAPEG00000010728)	ENSAPEG00000010760	ENSAPEG00000010784	kifap3b (ENSAPEG00000010797)	PDC (ENSAPEG00000010872)	ACOT11 (ENSAPEG00000010881)	mrpl37 (ENSAPEG00000010957)	csnk1g2a (ENSAPEG00000010965)	mfsd12a (ENSAPEG00000011021)	DEPDC5 (ENSAPEG00000011092)
Clown anemonefish	MODERN SPECIES	2279									zgc:152891 (ENSAOCG00000014394)	ENSAOCG00000014439	cryz (ENSAOCG00000014507)	cryz (ENSAOCG00000014545)	ENSAOCG00000014565	tox (ENSAOCG00000014596) #20	ca8 (ENSAOCG00000014619) #21	rab2a (ENSAOCG00000014658) #22
Spiny chromis	MODERN SPECIES	424								snx10a (ENSAPOG00000008888)	cbx3a (ENSAPOG00000008918)	nfe2l3 (ENSAPOG00000008937)	ENSAPOG00000008948	ENSAPOG00000008966	COLQ (ENSAPOG00000009049)	ENSAPOG00000009069	ca8 (ENSAPOG00000009089) #21	rab2a (ENSAPOG00000009138) #22	CHD7 (ENSAPOG00000009351) #23	ptbp2b (ENSAPOG00000000265)	dpydb (ENSAPOG00000009496)	odr4 (ENSAPOG00000009518)	TPR (ENSAPOG00000010288)	dusp12 (ENSAPOG00000010352)
Bicolor damselfish	MODERN SPECIES	1088								trnau1apb (ENSSPAG00000006917)	ankrd45 (ENSSPAG00000006895)	bpnt2 (ENSSPAG00000006880)	DARS2 (ENSSPAG00000006776)	cryz (ENSSPAG00000006715)	cryz (ENSSPAG00000006686)	tox (ENSSPAG00000006650) #20	ca8 (ENSSPAG00000006623) #21	rab2a (ENSSPAG00000006605) #22
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00990000203911.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b	ENSGT00940000156236.a.b	ENSGT00940000159687	ENSGT00390000016559	ENSGT00390000005318.a.a.b	ENSGT00940000156470.u.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	47	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.p.a	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000154805.b.g.e.b.d.p.b	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.d.o	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	46	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.p.a	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.d.p.b	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b
Haplochromini	ANCESTRAL SPECIES	51	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.p.a	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.d.p.b	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00950000182841.a.o.b	ENSGT01030000235305.b	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b
Burton s mouthbrooder	MODERN SPECIES	511		klhl20 (ENSHBUG00000018557)	lhx8a (ENSHBUG00000018583)	ENSHBUG00000018615	ENSHBUG00000018641	myh7 (ENSHBUG00000018767)	myh7l (ENSHBUG00000018876)	fitm1l (ENSHBUG00000018892)	trnau1apb (ENSHBUG00000018944)	bpnt2 (ENSHBUG00000018953)	DARS2 (ENSHBUG00000019027)	ENSHBUG00000019051	cryz (ENSHBUG00000019086)	tox (ENSHBUG00000019097) #20	ca8 (ENSHBUG00000000816) #21	rab2a (ENSHBUG00000019164) #22	CHD7 (ENSHBUG00000019225) #23	ptbp2b (ENSHBUG00000019240)	dpydb (ENSHBUG00000019324)	odr4 (ENSHBUG00000019634)	TPR (ENSHBUG00000019780)	dusp12 (ENSHBUG00000019816)
Haplochromini_A	ANCESTRAL SPECIES	46	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.p.a	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.d.p.b	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00950000182841.a.o.b	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00530000063751.a.b	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b
P. nyererei	MODERN SPECIES	372	klhl20 (ENSPNYG00000011732)	lhx8a (ENSPNYG00000011780)	ENSPNYG00000011837	ENSPNYG00000011872	ENSPNYG00000011905	myh7 (ENSPNYG00000011929)	myh7l (ENSPNYG00000012016)	fitm1l (ENSPNYG00000012110)	trnau1apb (ENSPNYG00000012127)	ENSPNYG00000012170	bpnt2 (ENSPNYG00000012191)	DARS2 (ENSPNYG00000012231)	cryz (ENSPNYG00000012297)	tox (ENSPNYG00000012367) #20	ca8 (ENSPNYG00000012390) #21	rab2a (ENSPNYG00000012426) #22	CHD7 (ENSPNYG00000012490) #23	ptbp2b (ENSPNYG00000012610)	dpydb (ENSPNYG00000012672)	odr4 (ENSPNYG00000012767)	TPR (ENSPNYG00000012808)	prg4a (ENSPNYG00000012975)	dusp12 (ENSPNYG00000013005)	OLFML2B (ENSPNYG00000013033)	ENSPNYG00000013060	kifap3b (ENSPNYG00000013087)	ENSPNYG00000013236
Haplochromini_B	ANCESTRAL SPECIES	51	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d.p.a	ENSGT00990000203911.f	ENSGT00940000154805.b.g.e.b.d.p.b	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060	ENSGT00940000164879	ENSGT01030000234618.B	ENSGT00950000182841.a.o.b	ENSGT00940000154882	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT01050000244924.a.b.h	ENSGT00500000044896	ENSGT00390000012568	ENSGT00730000111014.o.a	ENSGT00930000151041	ENSGT00940000157757.g.b	ENSGT00940000154149.b.a.h	ENSGT00390000003574.b
Zebra mbuna	MODERN SPECIES	1100	ENSMZEG00005010353	ENSMZEG00005010358	ENSMZEG00005010363	ENSMZEG00005010376	ENSMZEG00005010390	ENSMZEG00005010408	PCDH8 (ENSMZEG00005010420)	ENSMZEG00005010425	CNMD (ENSMZEG00005010433)	sugt1 (ENSMZEG00005010451)	DARS2 (ENSMZEG00005010481)	ENSMZEG00005010531	cryz (ENSMZEG00005010551)	tox (ENSMZEG00005010571) #20	ca8 (ENSMZEG00005010579) #21	rab2a (ENSMZEG00005010611) #22	CHD7 (ENSMZEG00005010646) #23	ptbp2b (ENSMZEG00005010677)	dpydb (ENSMZEG00005010698)	odr4 (ENSMZEG00005010748)	TPR (ENSMZEG00005010788)	dusp12 (ENSMZEG00005010808)	ENSMZEG00005010815	ENSMZEG00005010824	kifap3b (ENSMZEG00005010840)	ENSMZEG00005010865	casp20 (ENSMZEG00005010871)	ENSMZEG00005010884	ENSMZEG00005010900	ENSMZEG00005010926	catip (ENSMZEG00005010978)
Eastern happy	MODERN SPECIES	9	ENSACLG00000003464	myh7 (ENSACLG00000003368)	ENSACLG00000003346	myh7 (ENSACLG00000003275)	ENSACLG00000003247	myh7 (ENSACLG00000003141)	myh7l (ENSACLG00000003078)	fitm1l (ENSACLG00000003061)	trnau1apb (ENSACLG00000003016)	bpnt2 (ENSACLG00000002971)	DARS2 (ENSACLG00000002899)	ENSACLG00000002797	cryz (ENSACLG00000002758)	tox (ENSACLG00000002718) #20	ca8 (ENSACLG00000002662) #21	rab2a (ENSACLG00000002599) #22	ENSACLG00000002293 #23	ENSACLG00000002269	ptbp2b (ENSACLG00000001885)	dpydb (ENSACLG00000001822)	odr4 (ENSACLG00000001637)	TPR (ENSACLG00000001327)	dusp12 (ENSACLG00000001272)	ENSACLG00000001262	ENSACLG00000001245	kifap3b (ENSACLG00000001130)	ENSACLG00000001091	ENSACLG00000001085	ENSACLG00000001034	ENSACLG00000001003	KIF1C (ENSACLG00000000871)
Lyretail cichlid	MODERN SPECIES	517												ENSNBRG00000001166	cryz (ENSNBRG00000001185)	tox (ENSNBRG00000001205) #20	ca8 (ENSNBRG00000001213) #21	rab2a (ENSNBRG00000001241) #22	CHD7 (ENSNBRG00000001280) #23	ptbp2b (ENSNBRG00000001492)	dpydb (ENSNBRG00000001729)	ENSNBRG00000001773	odr4 (ENSNBRG00000001802)	ENSNBRG00000001944	ENSNBRG00000002023	prg4a (ENSNBRG00000002049)	kifap3b (ENSNBRG00000002126)	ENSNBRG00000002199	dusp12 (ENSNBRG00000002213)
Nile tilapia	MODERN SPECIES	9	klhl20 (ENSONIG00000016654)	lhx8a (ENSONIG00000016653)	ENSONIG00000031803	ENSONIG00000042307	myh7 (ENSONIG00000032313)	myh7 (ENSONIG00000038471)	ENSONIG00000034260	myh7l (ENSONIG00000016644)	fitm1l (ENSONIG00000032802)	trnau1apb (ENSONIG00000016639)	bpnt2 (ENSONIG00000016637)	DARS2 (ENSONIG00000016633)	cryz (ENSONIG00000016629)	tox (ENSONIG00000039081) #20	ca8 (ENSONIG00000016625) #21	rab2a (ENSONIG00000034587) #22	CHD7 (ENSONIG00000016614) #23	ptbp2b (ENSONIG00000016603)	dpydb (ENSONIG00000016599)	odr4 (ENSONIG00000016598)	TPR (ENSONIG00000016590)	prg4a (ENSONIG00000016584)	dusp12 (ENSONIG00000016579)	ENSONIG00000038331	ENSONIG00000016576	ENSONIG00000016571	kifap3b (ENSONIG00000016566)	ENSONIG00000006347	xkr4 (ENSONIG00000006346)	tmem68 (ENSONIG00000006342)	ENSONIG00000006339
Midas cichlid	MODERN SPECIES	754	ENSACIG00000002091	ENSACIG00000002075	ENSACIG00000002061	ENSACIG00000002049	ENSACIG00000002014	ENSACIG00000002001	ENSACIG00000001987	ENSACIG00000001950	fitm1l (ENSACIG00000001929)	trnau1apb (ENSACIG00000001863)	bpnt2 (ENSACIG00000001817)	DARS2 (ENSACIG00000001777)	cryz (ENSACIG00000001754)	tox (ENSACIG00000001734) #20	ca8 (ENSACIG00000001725) #21	rab2a (ENSACIG00000001706) #22	CHD7 (ENSACIG00000001590) #23	ptbp2b (ENSACIG00000001387)	dpydb (ENSACIG00000001318)	odr4 (ENSACIG00000001253)	TPR (ENSACIG00000001159)	prg4a (ENSACIG00000001078)	dusp12 (ENSACIG00000001051)	OLFML2B (ENSACIG00000000986)	ENSACIG00000000951	kifap3b (ENSACIG00000000909)	PDC (ENSACIG00000000781)	rab36 (ENSACIG00000000642)	DEPDC5 (ENSACIG00000000549)	mfsd12a (ENSACIG00000000513)	csnk1g2a (ENSACIG00000000477)
Cod	MODERN SPECIES	21	ENSGMOG00000009051	ENSGMOG00000009060	ENSGMOG00000017508	ENSGMOG00000018917	ENSGMOG00000015473	ENSGMOG00000014481	ENSGMOG00000006972	ENSGMOG00000006956	ENSGMOG00000006947	ENSGMOG00000025885	ENSGMOG00000007436	ENSGMOG00000025577	ENSGMOG00000022214	ENSGMOG00000026797	ca8 (ENSGMOG00000013905) #21	ENSGMOG00000012074 #22	CHD7 (ENSGMOG00000004232) #23	ENSGMOG00000026957	ENSGMOG00000013468	ENSGMOG00000013438	ENSGMOG00000035283	ENSGMOG00000032553	ENSGMOG00000026465	ENSGMOG00000031338	ENSGMOG00000028682	ENSGMOG00000004039	ENSGMOG00000004023	ENSGMOG00000015316	ENSGMOG00000011750	ZMYND11 (ENSGMOG00000013209)	DIP2C (ENSGMOG00000013194)
Protacanthopterygii	ANCESTRAL SPECIES	55	ENSGT00950000183115.a.a.b.f	ENSGT00940000161398.f	ENSGT00940000156342.c	ENSGT00940000164152.b	ENSGT00390000006294.c	ENSGT00940000163253.b.c.a.a	ENSGT00940000155439.a.a	ENSGT00950000183106.a.a.a	ENSGT00940000154648.a.a	ENSGT00940000156055	ENSGT00390000018687	ENSGT00940000162473	ENSGT00670000098080	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00940000164519.c.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a #17	ENSGT00950000183056.B.b.g #15	ENSGT00940000160216 #14	ENSGT00950000183149.A.f #13	ENSGT00940000156731.q.b #11	ENSGT00940000156600.e	ENSGT00940000156200.A	ENSGT00940000153304.C	ENSGT00940000154882	ENSGT00530000063681.b.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1282															ENSGT00940000158863.d #21	ENSGT00940000153886.a.b.u #22	ENSGT00940000153649.A.y.a #23
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00730000114072	ENSGT01040000240444.A.b.a.a.j	ENSGT00950000183115.a.a.b.e	ENSGT00940000161398.f.e	ENSGT00940000156342.c.j	ENSGT00390000006294.c.b	ENSGT00940000163253.b.c.a.a.b	ENSGT00940000155439.a.a.c	ENSGT00940000154648.a.a.o.a.a	ENSGT00940000156055	ENSGT00390000018687.g	ENSGT00940000162473.c	ENSGT00670000098080.d	ENSGT00940000159497.c.a #20	ENSGT00940000158863.c #21	ENSGT00940000153886.a.b.u.a #22	ENSGT00940000153649.A.y.b #23	ENSGT00940000166547	ENSGT00940000159203.g	ENSGT00940000164519.c.a.b	ENSGT00940000153141.B.a.k #17	ENSGT00950000183056.B.b.g.a #15	ENSGT00940000160216.b #14	ENSGT00950000183149.A.f.e #13	ENSGT00940000156731.q.b.a #11	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT01040000240444.A.b.a.a.j	ENSGT00950000183115.a.a.b.e	ENSGT00940000161398.f.e	ENSGT00940000156342.c.j	ENSGT00390000006294.c.b	ENSGT00940000163253.b.c.a.a.b	ENSGT00940000155439.a.a.c	ENSGT00940000154648.a.a.n	ENSGT00940000177736	ENSGT00940000156055	ENSGT00390000018687.g	ENSGT00940000162473.c	ENSGT00670000098080.d	ENSGT00940000159497.c.a #20	ENSGT00940000158863.c #21	ENSGT00940000153886.a.b.u.a #22	ENSGT00940000153649.A.y.b #23	ENSGT01010000223470.a	ENSGT00940000159203.g	ENSGT00940000164519.c.a.b	ENSGT00940000153141.B.a.k #17	ENSGT00950000183056.B.b.g.a #15	ENSGT00940000160216.b #14	ENSGT00950000183149.A.f.e #13	ENSGT00940000156731.q.b.a #11	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00950000183115.a.a.b.f.a.b	ENSGT00950000183115.a.a.b.e	ENSGT00940000161398.f.e	ENSGT00940000156342.c.j	ENSGT00390000006294.c.b	ENSGT00940000163253.b.c.a.a.b	ENSGT00940000155439.a.a.c	ENSGT00940000154648.a.a.n	ENSGT00940000177736	ENSGT00940000156055	ENSGT00390000018687.g	ENSGT00940000162473.c	ENSGT00670000098080.d	ENSGT00940000159497.c.a #20	ENSGT00940000158863.c #21	ENSGT00940000153886.a.b.u.a #22	ENSGT00940000153649.A.y.b #23	ENSGT01010000223470.a	ENSGT00940000159203.g	ENSGT00940000164519.c.a.b	ENSGT00940000153141.B.a.k #17	ENSGT00950000183056.B.b.g.a #15	ENSGT00940000160216.b #14	ENSGT00950000183149.A.f.e #13	ENSGT00940000156731.q.b.a #11	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376.a	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b
Chinook salmon	MODERN SPECIES	20	per2 (ENSOTSG00005043412)	ENSOTSG00005043414	ENSOTSG00005043415	ENSOTSG00005043417	CLCN2 (ENSOTSG00005043418)	ENSOTSG00005043579	ENSOTSG00005043583	tfa (ENSOTSG00005043588)	ENSOTSG00005044208	ENSOTSG00005044210	ubxn7 (ENSOTSG00005044211)	ppp1r7 (ENSOTSG00005044212)	xrn1 (ENSOTSG00005044227)	tox (ENSOTSG00005045642) #20	ca8 (ENSOTSG00005045643) #21	rab2a (ENSOTSG00005045645) #22	CHD7 (ENSOTSG00005045659) #23	ENSOTSG00005002766	ttpa (ENSOTSG00005002830)	xpr1b (ENSOTSG00005002950)	cyp7a1 (ENSOTSG00005003948) #17	FAM110B (ENSOTSG00005003951) #15	ENSOTSG00005003953	penka (ENSOTSG00005003955) #13	SLC44A5 (ENSOTSG00005003993)	lhx8a (ENSOTSG00005006463)	ENSOTSG00005006464	cryz (ENSOTSG00005006465)	ENSOTSG00005006467	fam151a (ENSOTSG00005006468)	acot11a (ENSOTSG00005006470)
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000065752	ENSOMYG00000053183	ENSOMYG00000047508	ENSOMYG00000047481	ENSOMYG00000047516	eif4g1a (ENSOMYG00000047570)	tfa (ENSOMYG00000047622)	ENSOMYG00000046073	ENSOMYG00000058371	ENSOMYG00000052030	ppp1r7 (ENSOMYG00000047646)	ENSOMYG00000047681	tox (ENSOMYG00000047729) #20	ENSOMYG00000039119	ca8 (ENSOMYG00000047732) #21	rab2a (ENSOMYG00000047746) #22	CHD7 (ENSOMYG00000047790) #23	ENSOMYG00000047812	ENSOMYG00000047813	ENSOMYG00000047814	ENSOMYG00000037603 #17	ENSOMYG00000077583 #15	ENSOMYG00000037626	penka (ENSOMYG00000037632) #13	sdr16c5a (ENSOMYG00000037663) #11	SLC44A5 (ENSOMYG00000037940)	lhx8a (ENSOMYG00000038175)	cryz (ENSOMYG00000038188)	fam151a (ENSOMYG00000038204)	acot11a (ENSOMYG00000038467)	mrpl37 (ENSOMYG00000039653)
Salmo	ANCESTRAL SPECIES	5	ENSGT00730000114072	ENSGT01040000240444.A.b.a.a.j	ENSGT00950000183115.a.a.b.e	ENSGT00940000161398.f.e	ENSGT00940000156342.c.j	ENSGT00390000006294.c.b	ENSGT00940000163253.b.c.a.a.b	ENSGT00940000155439.a.a.c	ENSGT00940000154648.a.a.o.a.a	ENSGT00940000156055	ENSGT00390000018687.g	ENSGT00940000162473.c	ENSGT00670000098080.d	ENSGT00940000159497.c.a #20	ENSGT00940000158863.c #21	ENSGT00940000153886.a.b.u.a #22	ENSGT00940000153649.A.y.b #23	ENSGT00940000166547	ENSGT00940000159203.g	ENSGT00940000164519.c.a.b	ENSGT00940000153141.B.a.k #17	ENSGT00950000183056.B.b.g.a #15	ENSGT00940000160216.b #14	ENSGT00940000182346	ENSGT00940000156731.q.b.a #11	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000154882.a	ENSGT00940000161095	ENSGT00530000063681.b.b	ENSGT00940000156460.A.b
Atlantic salmon	MODERN SPECIES	22	ITM2C (ENSSSAG00000001812)	ENSSSAG00000001807	per2 (ENSSSAG00000001704)	ENSSSAG00000113867	ENSSSAG00000001646	ENSSSAG00000065901	ENSSSAG00000117680	eif4g1a (ENSSSAG00000064701)	tfa (ENSSSAG00000064384)	ENSSSAG00000120953	ubxn7 (ENSSSAG00000113563)	ppp1r7 (ENSSSAG00000064323)	ENSSSAG00000055451	tox (ENSSSAG00000074789) #20	ca8 (ENSSSAG00000074784) #21	rab2a (ENSSSAG00000055274) #22	CHD7 (ENSSSAG00000052616) #23	ENSSSAG00000109966	ENSSSAG00000087189	ENSSSAG00000095974 #25	ENSSSAG00000106141	ENSSSAG00000051480	ENSSSAG00000051425 #17	ENSSSAG00000115373 #15	ENSSSAG00000051395 #14	ENSSSAG00000051384	sdr16c5a (ENSSSAG00000051369) #11	SLC44A5 (ENSSSAG00000048493)	lhx8a (ENSSSAG00000048374)	cryz (ENSSSAG00000048348)	ENSSSAG00000102517
River trout	MODERN SPECIES	24	ENSSTUG00000038338	GPR55 (ENSSTUG00000038348)	itm2cb (ENSSTUG00000038358)	hes6 (ENSSTUG00000038369)	per2 (ENSSTUG00000038404)	ENSSTUG00000038770	CLCN2 (ENSSTUG00000038800)	ENSSTUG00000039774	eif4g1a (ENSSTUG00000039845)	tfa (ENSSTUG00000040789)	ubxn7 (ENSSTUG00000042740)	ppp1r7 (ENSSTUG00000042882)	xrn1 (ENSSTUG00000042981)	tox (ENSSTUG00000043309) #20	ca8 (ENSSTUG00000043314) #21	rab2a (ENSSTUG00000043334) #22	CHD7 (ENSSTUG00000043546) #23	asph (ENSSTUG00000046988)	ttpa (ENSSTUG00000047003)	xpr1b (ENSSTUG00000047006)	cyp7a1 (ENSSTUG00000047039) #17	FAM110B (ENSSTUG00000047052) #15	BPNT2 (ENSSTUG00000047058) #14	ENSSTUG00000047077	sdr16c5a (ENSSTUG00000047088) #11	SLC44A5 (ENSSTUG00000047109)	ENSSTUG00000047192	lhx8a (ENSSTUG00000047196)	cryz (ENSSTUG00000047207)	ENSSTUG00000047219	fam151a (ENSSTUG00000047223)
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00950000183115.a.a.b.f.a.a	ENSGT00940000161398.f.f	ENSGT00940000156342.c.i	ENSGT00940000164152.b	ENSGT00390000006294.c.a	ENSGT00940000163253.b.c.a.a.a	ENSGT00940000155439.a.a.d	ENSGT00950000183106.a.a.a	ENSGT00940000154648.a.a.o.a.b	ENSGT00390000018687.h	ENSGT00940000162473.d	ENSGT01030000235544.A.b	ENSGT00670000098080.c	ENSGT00940000159497.c.b #20	ENSGT00940000158863.d #21	ENSGT00940000153886.a.b.u.b #22	ENSGT00940000153649.A.y.a #23	ENSGT01010000223470	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l #17	ENSGT00950000183056.B.b.g.b #15	ENSGT00940000160216.a #14	ENSGT00950000183149.A.f.f #13	ENSGT00940000156731.q.b.b.a #11	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00950000183136.b.b.j	ENSGT00950000183115.a.a.b.f.a.a	ENSGT00940000161398.f.f	ENSGT00940000156342.c.i	ENSGT00390000006294.c.a	ENSGT00940000163253.b.c.a.a.a	ENSGT00940000155439.a.a.d	ENSGT00950000183106.a.a.a	ENSGT00940000154648.a.a.o.a.b	ENSGT00390000018687.h	ENSGT00940000162473.d	ENSGT01000000222052	ENSGT00670000098080.c	ENSGT00940000159497.c.b #20	ENSGT00940000158863.d #21	ENSGT00940000153886.a.b.u.b #22	ENSGT00940000153649.A.y.a #23	ENSGT01030000234567.B.a.b.a.b.a.i.a.b.a	ENSGT01010000223470.b	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l #17	ENSGT00950000183056.B.b.g.b #15	ENSGT00940000160216.a #14	ENSGT00950000183149.A.f.f #13	ENSGT00940000156731.q.b.b.a #11	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000170376.b
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00950000183136.b.b.j	ENSGT00950000183115.a.a.b.f.a.a	ENSGT00940000161398.f.f	ENSGT00940000156342.c.i	ENSGT00390000006294.c.a	ENSGT00940000163253.b.c.a.a.a	ENSGT00940000155439.a.a.d	ENSGT00950000183106.a.a.a	ENSGT00940000154648.a.a.o.a.b	ENSGT00390000018687.h	ENSGT00940000162473.d	ENSGT01000000222052	ENSGT00670000098080.c	ENSGT00940000159497.c.b #20	ENSGT00940000158863.d #21	ENSGT00940000153886.a.b.u.b #22	ENSGT00940000153649.A.y.a #23	ENSGT01030000234567.B.a.b.a.b.a.i.a.b.a	ENSGT00940000156304.c.b #25	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l #17	ENSGT00950000183056.B.b.g.b #15	ENSGT00940000160216.a #14	ENSGT00950000183149.A.f.f #13	ENSGT00940000156731.q.b.b.a #11	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000153304.C	ENSGT00940000156460.A.a
Coho salmon	MODERN SPECIES	23	lpar5a (ENSOKIG00005035742)	itm2cb (ENSOKIG00005035727)	hes6 (ENSOKIG00005035705)	per2 (ENSOKIG00005035689)	ENSOKIG00005035636	ENSOKIG00005035618	CLCN2 (ENSOKIG00005034601)	fam131aa (ENSOKIG00005034537)	ENSOKIG00005034131	ubxn7 (ENSOKIG00005033969)	ppp1r7 (ENSOKIG00005033894)	ENSOKIG00005033876	xrn1 (ENSOKIG00005033644)	tox (ENSOKIG00005033567) #20	ca8 (ENSOKIG00005033538) #21	rab2a (ENSOKIG00005033397) #22	CHD7 (ENSOKIG00005031755) #23	ENSOKIG00005031635	ENSOKIG00005031614 #25	TTPA (ENSOKIG00005031595)	xpr1b (ENSOKIG00005031564)	ENSOKIG00005031472	CYP7A1 (ENSOKIG00005031429) #17	FAM110B (ENSOKIG00005031419) #15	BPNT2 (ENSOKIG00005031411) #14	penka (ENSOKIG00005031406) #13	sdr16c5a (ENSOKIG00005031315) #11	sdr16c5a (ENSOKIG00005031302) #11	ENSOKIG00005031283	SLC44A5 (ENSOKIG00005030976)	lhx8a (ENSOKIG00005030935)
Rainbow trout	MODERN SPECIES	29	itm2cb (ENSOMYG00000007130)	hes6 (ENSOMYG00000007096)	per2 (ENSOMYG00000006999)	ENSOMYG00000057872	ENSOMYG00000006920	ENSOMYG00000006886	ENSOMYG00000006404	fam131aa (ENSOMYG00000068279)	eif4g1a (ENSOMYG00000005870)	ubxn7 (ENSOMYG00000005386)	ppp1r7 (ENSOMYG00000005221)	ENSOMYG00000005203	ENSOMYG00000004993	tox (ENSOMYG00000004662) #20	ca8 (ENSOMYG00000004617) #21	rab2a (ENSOMYG00000004550) #22	CHD7 (ENSOMYG00000003013) #23	ENSOMYG00000001656	ENSOMYG00000001472	ENSOMYG00000001295	ENSOMYG00000024980	ENSOMYG00000024817 #17	ENSOMYG00000024733 #15	BPNT2 (ENSOMYG00000024713) #14	penka (ENSOMYG00000024686) #13	sdr16c5a (ENSOMYG00000024621) #11	ENSOMYG00000018256	SLC44A5 (ENSOMYG00000024180)	lhx8a (ENSOMYG00000023960)	ENSOMYG00000023946	cryz (ENSOMYG00000023936)
Salmo	ANCESTRAL SPECIES	35	ENSGT00950000183115.a.a.b.f.a.a	ENSGT00940000161398.f.f	ENSGT00940000156342.c.i	ENSGT00940000164152.b	ENSGT00390000006294.c.a	ENSGT00940000163253.b.c.a.a.a	ENSGT00940000155439.a.a.d	ENSGT00950000183106.a.a.a	ENSGT00940000154648.a.a.o.a.b	ENSGT00390000018687.h	ENSGT00940000162473.d	ENSGT01030000235544.A.b	ENSGT00670000098080.c	ENSGT00940000159497.c.b #20	ENSGT00940000158863.d #21	ENSGT00940000153886.a.b.u.b #22	ENSGT00940000153649.A.y.a #23	ENSGT00940000159203.h	ENSGT00940000164519.c.a.a	ENSGT00940000155899.e.b	ENSGT00940000153141.B.a.l #17	ENSGT00950000183056.B.b.g.b #15	ENSGT00940000160216.a #14	ENSGT00950000183149.A.f.f #13	ENSGT00940000156731.q.b.b.a #11	ENSGT00940000156600.e.a	ENSGT00940000156200.A.c	ENSGT00940000170376.b	ENSGT00940000154882.b	ENSGT00940000156460.A.a	ENSGT00950000182915.b.b.a.a.bb.a
River trout	MODERN SPECIES	13	hes6 (ENSSTUG00000047829)	per2 (ENSSTUG00000047814)	ENSSTUG00000047811	ENSSTUG00000047806	ENSSTUG00000047797	CLCN2 (ENSSTUG00000047749)	fam131aa (ENSSTUG00000047735)	eif4g1a (ENSSTUG00000047640)	ubxn7 (ENSSTUG00000047597)	ppp1r7 (ENSSTUG00000047579)	ENSSTUG00000047570	xrn1 (ENSSTUG00000047406)	tox (ENSSTUG00000047388) #20	ca8 (ENSSTUG00000047374) #21	ENSSTUG00000047372	rab2a (ENSSTUG00000047361) #22	CHD7 (ENSSTUG00000043231) #23	ENSSTUG00000042761 #25	ttpa (ENSSTUG00000042720)	ENSSTUG00000042707	xpr1b (ENSSTUG00000042485)	ENSSTUG00000041344	cyp7a1 (ENSSTUG00000041243) #17	FAM110B (ENSSTUG00000041227) #15	BPNT2 (ENSSTUG00000041203) #14	penka (ENSSTUG00000041177) #13	sdr16c5a (ENSSTUG00000041153) #11	SLC44A5 (ENSSTUG00000039347)	lhx8a (ENSSTUG00000039289)	ENSSTUG00000039282	cryz (ENSSTUG00000039263)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000077077	ENSSSAG00000076981	ENSSSAG00000076974	ENSSSAG00000099781	ENSSSAG00000076967	ENSSSAG00000076832	fam131aa (ENSSSAG00000098049)	ENSSSAG00000100423	eif4g1a (ENSSSAG00000076539)	ubxn7 (ENSSSAG00000064328)	ppp1r7 (ENSSSAG00000076462)	ENSSSAG00000089869	ENSSSAG00000074868	tox (ENSSSAG00000055315) #20	ca8 (ENSSSAG00000055293) #21	rab2a (ENSSSAG00000082246) #22	CHD7 (ENSSSAG00000074317) #23	ENSSSAG00000090177	TTPA (ENSSSAG00000074257)	ENSSSAG00000074103	ENSSSAG00000073257	ENSSSAG00000073200 #17	ENSSSAG00000120023 #15	BPNT2 (ENSSSAG00000101217) #14	penka (ENSSSAG00000101555) #13	sdr16c5a (ENSSSAG00000073183) #11	SLC44A5 (ENSSSAG00000071065)	lhx8a (ENSSSAG00000073174)	ENSSSAG00000070937	cryz (ENSSSAG00000088084)	acot11a (ENSSSAG00000070400)
Salmoninae	ANCESTRAL SPECIES	131	ENSGT00940000156108.e.b	ENSGT01040000240444.A.b.a.a.j	ENSGT00950000183115.a.a.b.e	ENSGT00940000161398.f.e	ENSGT00940000156342.c.j	ENSGT00390000006294.c.b	ENSGT00940000163253.b.c.a.a.b	ENSGT00940000155439.a.a.c	ENSGT00940000154648.a.a.o.a.a	ENSGT00940000156055	ENSGT00390000018687.g	ENSGT00940000162473.c	ENSGT00670000098080.d	ENSGT00940000159497.c.a #20	ENSGT00940000158863.c #21	ENSGT00940000153886.a.b.v #22	ENSGT00940000153649.A.y.b #23	ENSGT00940000166547	ENSGT01010000223470	ENSGT00940000159203.g	ENSGT00940000164519.c.a.b	ENSGT00940000153141.B.a.k #17	ENSGT00950000183056.B.b.g.a #15	ENSGT00940000160216.b #14	ENSGT00950000183149.A.f.e #13	ENSGT00940000156731.q.b.a #11	ENSGT00940000156600.e.b	ENSGT00940000156200.A.d	ENSGT00940000170376	ENSGT00940000154882.b	ENSGT00940000164586.h
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3885															ca8 (ENSHHUG00000045802) #21	rab2a (ENSHHUG00000045791) #22	ENSHHUG00000045780
Huchen	MODERN SPECIES	2823															ca8 (ENSHHUG00000012012) #21	rab2a (ENSHHUG00000012015) #22	CHD7 (ENSHHUG00000012049) #23
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.v #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.v #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b.v #22
Coho salmon	MODERN SPECIES	19	ENSOKIG00005050816	gigyf2 (ENSOKIG00005050817)	hes6 (ENSOKIG00005050823)	itm2cb (ENSOKIG00005050825)	ENSOKIG00005050829	ENSOKIG00005050835	ENSOKIG00005050836	CLCN2 (ENSOKIG00005050844)	ENSOKIG00005050845	tfa (ENSOKIG00005037941)	ubxn7 (ENSOKIG00005039655)	ppp1r7 (ENSOKIG00005039721)	XRN1 (ENSOKIG00005039881)	tox (ENSOKIG00005044113) #20	ca8 (ENSOKIG00005044120) #21	rab2a (ENSOKIG00005044147) #22	CHD7 (ENSOKIG00005044555) #23	ENSOKIG00005048396	ttpa (ENSOKIG00005048417)	ENSOKIG00005048439	ENSOKIG00005048531	cyp7a1 (ENSOKIG00005048538) #17	FAM110B (ENSOKIG00005048548) #15	ENSOKIG00005048551 #14	penka (ENSOKIG00005048555) #13	sdr16c5a (ENSOKIG00005048562) #11	SLC44A5 (ENSOKIG00005048579)	lhx8a (ENSOKIG00005048611)	cryz (ENSOKIG00005048619)	ENSOKIG00005048624	fam151a (ENSOKIG00005048628)
Chinook salmon	MODERN SPECIES	1	lpar5a (ENSOTSG00005040446)	itm2cb (ENSOTSG00005040445)	hes6 (ENSOTSG00005040443)	per2 (ENSOTSG00005040438)	ENSOTSG00005040435	ENSOTSG00005040433	CLCN2 (ENSOTSG00005040271)	fam131aa (ENSOTSG00005040266)	eif4g1a (ENSOTSG00005040231)	ubxn7 (ENSOTSG00005040227)	ppp1r7 (ENSOTSG00005040224)	ENSOTSG00005040222	xrn1 (ENSOTSG00005034042)	tox (ENSOTSG00005034032) #20	ca8 (ENSOTSG00005034031) #21	rab2a (ENSOTSG00005033931) #22	CHD7 (ENSOTSG00005030378) #23	ENSOTSG00005030330	ENSOTSG00005030328	ttpa (ENSOTSG00005030327)	xpr1b (ENSOTSG00005030292)	ENSOTSG00005030266	cyp7a1 (ENSOTSG00005030254) #17	FAM110B (ENSOTSG00005030251) #15	BPNT2 (ENSOTSG00005030249) #14	penka (ENSOTSG00005030239) #13	sdr16c5a (ENSOTSG00005030238) #11	ENSOTSG00005030237	ENSOTSG00005030183	lhx8a (ENSOTSG00005030178)	ENSOTSG00005030177
Northern pike	MODERN SPECIES	2	itm2cb (ENSELUG00000006607)	hes6 (ENSELUG00000006586)	per2 (ENSELUG00000006542)	ENSELUG00000006403	CLCN2 (ENSELUG00000006374)	zp2l2 (ENSELUG00000006240)	fam131aa (ENSELUG00000006207)	eif4g1a (ENSELUG00000006126)	ENSELUG00000015617	tfa (ENSELUG00000005788)	ubxn7 (ENSELUG00000005761)	ppp1r7 (ENSELUG00000000171)	xrn1 (ENSELUG00000000169)	tox (ENSELUG00000000161) #20	ca8 (ENSELUG00000005666) #21	rab2a (ENSELUG00000023964) #22	CHD7 (ENSELUG00000024442) #23	asph (ENSELUG00000024491)	ttpa (ENSELUG00000020006)	xpr1b (ENSELUG00000020061)	ENSELUG00000020121	cyp7a1 (ENSELUG00000020133) #17	sdr16c5a (ENSELUG00000020173) #11	penka (ENSELUG00000020208) #13	IMPAD1 (ENSELUG00000020235) #14	FAM110B (ENSELUG00000030124) #15	SLC44A5 (ENSELUG00000001762)	lhx8a (ENSELUG00000022992)	tyw3 (ENSELUG00000023000)	cryz (ENSELUG00000023028)	ENSELUG00000023039
Otomorpha	ANCESTRAL SPECIES	18	ENSGT00940000156460.A	ENSGT00530000063681.b.b	ENSGT00940000161826.B	ENSGT00940000154882	ENSGT00940000153304.C	ENSGT00940000156200.A	ENSGT00940000156600.e	ENSGT00940000156731.q.b #11	ENSGT00950000183149.A.f #13	ENSGT00940000160216 #14	ENSGT00940000164879	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203
Otophysi	ANCESTRAL SPECIES	5	ENSGT00940000160749.a.b	ENSGT00940000158655.f	ENSGT00550000074822	ENSGT00940000158258.f	ENSGT01060000248660	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000164907.a	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00390000010687.a.a	ENSGT00390000008279.a	ENSGT00390000002727	ENSGT00390000010157.a	ENSGT00520000060044	ENSGT00390000014590	ENSGT00940000159218.a	ENSGT00940000164586.h	ENSGT00940000160852	ENSGT00390000012433.b.c.b	ENSGT00980000198608	ENSGT00940000159923
Characiphysae	ANCESTRAL SPECIES	77	ENSGT00940000155098	ENSGT00940000160749.a.b	ENSGT00940000158655.f	ENSGT00550000074822	ENSGT00940000158258.f	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000164907.a	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00390000010687.a.a	ENSGT00390000008279.a	ENSGT00390000002727	ENSGT00390000010157.a	ENSGT00520000060044	ENSGT00390000014590
Channel catfish	MODERN SPECIES	8		cldn11a (ENSIPUG00000006983)	SLC7A14 (ENSIPUG00000007010)	ENSIPUG00000007061	SLC2A2 (ENSIPUG00000007086)	ENSIPUG00000007172	efna2a (ENSIPUG00000007182)	rabggtb (ENSIPUG00000007190)	ACADM (ENSIPUG00000007227)	hectd3 (ENSIPUG00000007255)	casp20 (ENSIPUG00000007315)	ENSIPUG00000007325	rps8a (ENSIPUG00000007345)	ENSIPUG00000007477	ENSIPUG00000007526	rab2a (ENSIPUG00000007539) #22	CHD7 (ENSIPUG00000007585) #23	ENSIPUG00000007698	ttpa (ENSIPUG00000007781)	u2surp (ENSIPUG00000007822)	tmem59 (ENSIPUG00000007919)	ENSIPUG00000007934	ENSIPUG00000007945	ENSIPUG00000007958	pld1a (ENSIPUG00000007981)	ghsra (ENSIPUG00000008055)	nceh1a (ENSIPUG00000008081)	pccb (ENSIPUG00000008096)	PPP2R3A (ENSIPUG00000008145)	slc35g2 (ENSIPUG00000008206)	gyg1a (ENSIPUG00000008224)
Characiphysae_b	ANCESTRAL SPECIES	63	ENSGT00940000155098	ENSGT00940000160749.a.b	ENSGT00940000158655.f	ENSGT00550000074822	ENSGT00940000158258.f	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000164907.a	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00390000010687.a.a	ENSGT00390000008279.a	ENSGT00390000002727	ENSGT00390000010157.a	ENSGT00520000060044	ENSGT00390000014590	ENSGT00940000159218.a	ENSGT00940000164586.h	ENSGT00940000160852	ENSGT00980000198608	ENSGT00390000012433.b.c.b	ENSGT00940000159923
Characoidei	ANCESTRAL SPECIES	74	ENSGT00940000155098	ENSGT00940000160749.a.b	ENSGT00940000158655.f	ENSGT00550000074822	ENSGT00940000158258.f	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000164907.a	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000159203	ENSGT00390000010687.a.a	ENSGT00390000008279.a	ENSGT00390000002727	ENSGT00390000010157.a	ENSGT00520000060044	ENSGT00390000014590	ENSGT00940000159218.a	ENSGT00940000164586.h	ENSGT00940000160852	ENSGT00980000198608	ENSGT00390000012433.b.c.b	ENSGT00940000159923
Mexicana tetra	MODERN SPECIES	134										hs2st1a (ENSAMXG00000041451)	selenof (ENSAMXG00000006147)	fam110b (ENSAMXG00000025926) #15	cyp7a1 (ENSAMXG00000006152) #17	tox (ENSAMXG00000029536) #20	ca8 (ENSAMXG00000006163) #21	rab2a (ENSAMXG00000036772) #22	ENSAMXG00000039157	CHD7 (ENSAMXG00000006180) #23	ttpa (ENSAMXG00000006185)	u2surp (ENSAMXG00000006189)	tmem59 (ENSAMXG00000029497)	lrrc42 (ENSAMXG00000006193)
Red-bellied piranha	MODERN SPECIES	119	stk25b (ENSPNAG00000010673)	septin2 (ENSPNAG00000010720)	SOX14 (ENSPNAG00000010739)	CLDN18 (ENSPNAG00000010759)	HFM1 (ENSPNAG00000010865)	znf644a (ENSPNAG00000010912)	LRRC8D (ENSPNAG00000010924)	gtf2b (ENSPNAG00000001474)	PKN2 (ENSPNAG00000011044)	zgc:56628 (ENSPNAG00000011091)	hs2st1a (ENSPNAG00000011111)	selenof (ENSPNAG00000011122)	fam110b (ENSPNAG00000001549) #15	tox (ENSPNAG00000001566) #20	ca8 (ENSPNAG00000011177) #21	rab2a (ENSPNAG00000011193) #22	CHD7 (ENSPNAG00000011245) #23	asph (ENSPNAG00000001642)	ttpa (ENSPNAG00000001654)	u2surp (ENSPNAG00000001722)	tmem59 (ENSPNAG00000011421)	lrrc42 (ENSPNAG00000011453)	yipf1 (ENSPNAG00000001746)	zgc:113691 (ENSPNAG00000011465)	ndc1 (ENSPNAG00000011490)	ENSPNAG00000001767	ENSPNAG00000011527	BEST4 (ENSPNAG00000011559)	ENSPNAG00000005840	rps8a (ENSPNAG00000001823)	hectd3 (ENSPNAG00000011696)
Electric eel	MODERN SPECIES	19	septin2 (ENSEEEG00000020962)	SOX14 (ENSEEEG00000021235)	CLDN18 (ENSEEEG00000021236)	HFM1 (ENSEEEG00000021237)	znf644a (ENSEEEG00000021240)	LRRC8D (ENSEEEG00000021243)	gtf2b (ENSEEEG00000021249)	PKN2 (ENSEEEG00000021273)	zgc:56628 (ENSEEEG00000021307)	hs2st1a (ENSEEEG00000021317)	selenof (ENSEEEG00000021319)	fam110b (ENSEEEG00000021320) #15	cyp7a1 (ENSEEEG00000021322) #17	tox (ENSEEEG00000021323) #20	ca8 (ENSEEEG00000021324) #21	rab2a (ENSEEEG00000021325) #22	ENSEEEG00000021327	ENSEEEG00000021330	klhl31 (ENSEEEG00000021332)	gclc (ENSEEEG00000021342)	elovl5 (ENSEEEG00000021361)	fbxo9 (ENSEEEG00000021367)	ARFGEF3 (ENSEEEG00000021384)	cox20 (ENSEEEG00000021388)	lhb (ENSEEEG00000021389)	PLPP4 (ENSEEEG00000021391)	wdr11 (ENSEEEG00000021398)	fgfr2 (ENSEEEG00000021417)	ATE1 (ENSEEEG00000021549)	TMEM63B (ENSEEEG00000021561)	ENSEEEG00000021655
Cyprinoidei	ANCESTRAL SPECIES	21	ENSGT00940000160749.a.b	ENSGT00940000158655.f	ENSGT00550000074822	ENSGT00940000158258.f	ENSGT01060000248660	ENSGT00940000159311.d.a.b	ENSGT00390000006671	ENSGT00940000154339	ENSGT00940000164907.a	ENSGT00530000063408.B.c.a	ENSGT00940000154284.a	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000158009.b	ENSGT00390000014722	ENSGT00390000002582	ENSGT00940000157116.e	ENSGT00940000159566	ENSGT00940000158392.e.a	ENSGT01040000240451.a.b.b.a.a	ENSGT00530000063629.b.d	ENSGT00940000156360.d	ENSGT00940000160089.i	ENSGT00940000166630	ENSGT00530000064862	ENSGT00940000156678	ENSGT00940000154775.c.b.d.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	103	ENSGT00940000153476.a.a.a	ENSGT00940000155098.j	ENSGT00940000158655.f.a.b	ENSGT00550000074822	ENSGT00940000158258.f.a	ENSGT01060000248660.b.a	ENSGT00940000159311.d.a.b.b	ENSGT00390000006671.u	ENSGT00940000154339.q.b	ENSGT00940000164907.a.a	ENSGT00530000063408.B.c.a.c	ENSGT00950000183056.B.b.l #15	ENSGT00940000153141.B.a.x.a.b #17	ENSGT00940000159497.n #20	ENSGT00940000158863.k #21	ENSGT00940000153886.a.b.w #22	ENSGT00940000153649.A.`b #23	ENSGT00940000158009.b.f	ENSGT00390000014722.k	ENSGT00940000155142.nb.b	ENSGT00390000002582.q	ENSGT00940000157116.e.c	ENSGT00940000159566.i	ENSGT00940000158392.e.a.a	ENSGT01040000240451.a.b.b.a.a.c	ENSGT00530000063629.b.d.a.b	ENSGT00940000156360.d.a	ENSGT00940000160089.i.b	ENSGT00940000166630.a	ENSGT00940000156678.b	ENSGT00940000156042.`b.a
Cyprininae_a	ANCESTRAL SPECIES	4	ENSGT00940000155098.j	ENSGT00940000158655.f.a.b	ENSGT00550000074822	ENSGT00940000158258.f.a	ENSGT01060000248660.b.a	ENSGT00940000159311.d.a.b.b	ENSGT00390000006671.u	ENSGT00940000154339.q.b	ENSGT00940000164907.a.a	ENSGT00530000063408.B.c.a.c	ENSGT00940000154284.a.i	ENSGT00950000183056.B.b.l #15	ENSGT00940000153141.B.a.x.a.b #17	ENSGT00940000159497.n #20	ENSGT00940000158863.k #21	ENSGT00940000153886.a.b.w #22	ENSGT00940000153649.A.`b #23	ENSGT00940000158009.b.f	ENSGT00390000014722.k	ENSGT00940000155142.nb.b	ENSGT00390000002582.q	ENSGT00940000157116.e.c	ENSGT00940000159566.i	ENSGT00940000158392.e.a.a	ENSGT01040000240451.a.b.b.a.a.c	ENSGT00530000063629.b.d.a.b	ENSGT00940000156360.d.a	ENSGT00940000160089.i.b	ENSGT00940000166630.a	ENSGT00940000156678.b	ENSGT00940000156042.`b.a
Common carp reference	MODERN SPECIES	29	septin2 (ENSCCRG00000047002)	ENSCCRG00000026124	ENSCCRG00000046986	ENSCCRG00000073109	znf644a (ENSCCRG00000021939)	ENSCCRG00000073161	gtf2b (ENSCCRG00000021960)	PKN2 (ENSCCRG00000058743)	zgc:56628 (ENSCCRG00000065305)	hs2st1a (ENSCCRG00000082113)	selenof (ENSCCRG00000058960)	fam110b (ENSCCRG00000071280) #15	cyp7a1 (ENSCCRG00000034486) #17	tox (ENSCCRG00000034480) #20	ca8 (ENSCCRG00000049617) #21	rab2a (ENSCCRG00000074088) #22	CHD7 (ENSCCRG00000064547) #23	fbxl7 (ENSCCRG00000017549)	zgc:55781 (ENSCCRG00000076218)	mplkip (ENSCCRG00000079524)	inhbab (ENSCCRG00000016465)	afg3l2 (ENSCCRG00000076494)	plcd1b (ENSCCRG00000017818)	ctdsplb (ENSCCRG00000066449)	hhatla (ENSCCRG00000053544)	klhl40a (ENSCCRG00000058162)	ENSCCRG00000018484	ENSCCRG00000060034	ENSCCRG00000018499	dnajc1 (ENSCCRG00000071777)	bmi1b (ENSCCRG00000013563)
Golden-line barbel	MODERN SPECIES	4	septin2 (ENSSGRG00000006395)	SOX14 (ENSSGRG00000006387)	HFM1 (ENSSGRG00000006382)	znf644a (ENSSGRG00000006375)	ENSSGRG00000006364	ENSSGRG00000006363	gtf2b (ENSSGRG00000006184)	PKN2 (ENSSGRG00000000468)	zgc:56628 (ENSSGRG00000000149)	hs2st1a (ENSSGRG00000000107)	selenof (ENSSGRG00000000082)	fam110b (ENSSGRG00000000076) #15	cyp7a1 (ENSSGRG00000053326) #17	tox (ENSSGRG00000053325) #20	ca8 (ENSSGRG00000053320) #21	rab2a (ENSSGRG00000053316) #22	CHD7 (ENSSGRG00000053210) #23	fbxl7 (ENSSGRG00000053196)	zgc:55781 (ENSSGRG00000053195)	ralab (ENSSGRG00000053187)	mplkip (ENSSGRG00000053194)	inhbab (ENSSGRG00000053186)	afg3l2 (ENSSGRG00000053147)	plcd1b (ENSSGRG00000053141)	ctdsplb (ENSSGRG00000053130)	klhl40a (ENSSGRG00000053127)	ENSSGRG00000053126	ENSSGRG00000053113	dnajc1 (ENSSGRG00000053102)	bmi1b (ENSSGRG00000053099)	ENSSGRG00000053036
Goldfish	MODERN SPECIES	19	septin2 (ENSCARG00000017835)	ENSCARG00000018596	HFM1 (ENSCARG00000018605)	znf644a (ENSCARG00000018643)	ENSCARG00000018647	ENSCARG00000018656	gtf2b (ENSCARG00000018659)	PKN2 (ENSCARG00000018708)	zgc:56628 (ENSCARG00000019021)	hs2st1a (ENSCARG00000019043)	selenof (ENSCARG00000019060)	fam110b (ENSCARG00000019069) #15	cyp7a1 (ENSCARG00000019076) #17	tox (ENSCARG00000019105) #20	ca8 (ENSCARG00000019124) #21	rab2a (ENSCARG00000019150) #22	CHD7 (ENSCARG00000019321) #23	fbxl7 (ENSCARG00000025690)	zgc:55781 (ENSCARG00000025712)	ralab (ENSCARG00000025716)	mplkip (ENSCARG00000025728)	inhbab (ENSCARG00000025734)	afg3l2 (ENSCARG00000025772)	plcd1b (ENSCARG00000026625)	ctdsplb (ENSCARG00000027225)	hhatla (ENSCARG00000027408)	klhl40a (ENSCARG00000027488)	ENSCARG00000027524	ENSCARG00000027536	dnajc1 (ENSCARG00000027834)	bmi1b (ENSCARG00000028020)
Cyprininae	ANCESTRAL SPECIES	8	ENSGT00940000155098.i	ENSGT00940000160749.a.b.s	ENSGT00940000158655.f.b	ENSGT00940000158258.f.b	ENSGT01060000248660.b.b	ENSGT00940000159311.d.a.b.a	ENSGT00390000006671.v	ENSGT00940000154339.q.a	ENSGT00940000164907.a.b	ENSGT00530000063408.B.c.a.d	ENSGT00940000154284.a	ENSGT00950000183056.B.b.k #15	ENSGT00940000153141.B.a.x.a.a #17	ENSGT00940000159497.m #20	ENSGT00940000158863.l #21	ENSGT00940000153886.a.b.x #22	ENSGT00940000153649.A.ab #23	ENSGT00940000158009.b.e	ENSGT00390000014722.l	ENSGT00940000155142.nb.a	ENSGT00390000002582.r	ENSGT00940000157116.e.d	ENSGT00940000159566.j	ENSGT00940000158392.e.a.b	ENSGT01040000240451.a.b.b.a.a.d	ENSGT00530000063629.b.d.a.a	ENSGT00940000156360.d.b	ENSGT00940000160089.i.a	ENSGT00940000166630.b	ENSGT00940000156678.a	ENSGT00940000156042.`b.b
Goldfish	MODERN SPECIES	11	stk25b (ENSCARG00000013128)	septin2 (ENSCARG00000013393)	znf644a (ENSCARG00000013403)	ENSCARG00000013407	ENSCARG00000013411	ENSCARG00000013413	gtf2b (ENSCARG00000013426)	PKN2 (ENSCARG00000013624)	zgc:56628 (ENSCARG00000017493)	hs2st1a (ENSCARG00000017505)	selenof (ENSCARG00000017519)	fam110b (ENSCARG00000017541) #15	cyp7a1 (ENSCARG00000017547) #17	tox (ENSCARG00000017569) #20	ca8 (ENSCARG00000017614) #21	rab2a (ENSCARG00000017667) #22	CHD7 (ENSCARG00000017839) #23	fbxl7 (ENSCARG00000021811)	zgc:55781 (ENSCARG00000021832)	ralab (ENSCARG00000021839)	inhbab (ENSCARG00000021851)	afg3l2 (ENSCARG00000021923)	plcd1b (ENSCARG00000022480)	ctdsplb (ENSCARG00000022651)	hhatla (ENSCARG00000044861)	klhl40a (ENSCARG00000045317)	ENSCARG00000045358	ENSCARG00000045385	ENSCARG00000045449	ENSCARG00000045470	rps28 (ENSCARG00000045484)
Cyprininae_a	ANCESTRAL SPECIES	65	ENSGT00940000153476.a.a.b	ENSGT00940000155098.i	ENSGT00940000160749.a.b.s	ENSGT00940000158655.f.b	ENSGT00940000158258.f.b	ENSGT00940000159311.d.a.b.a	ENSGT00390000006671.v	ENSGT00940000154339.q.a	ENSGT00940000164907.a.b	ENSGT00530000063408.B.c.a.d	ENSGT00940000154284.a.j	ENSGT00950000183056.B.b.k #15	ENSGT00940000153141.B.a.x.a.a #17	ENSGT00940000159497.m #20	ENSGT00940000158863.l #21	ENSGT00940000153886.a.b.x #22	ENSGT00940000153649.A.ab #23	ENSGT00940000158009.b.e	ENSGT00390000014722.l	ENSGT00940000155142.nb.a	ENSGT00390000002582.r	ENSGT00940000157116.e.d	ENSGT00940000159566.j	ENSGT00940000158392.e.a.b	ENSGT01040000240451.a.b.b.a.a.d	ENSGT00530000063629.b.d.a.a	ENSGT00940000156360.d.b	ENSGT00940000160089.i.a	ENSGT00940000166630.b	ENSGT00940000156678.a	ENSGT00940000156042.`b.b
Golden-line barbel	MODERN SPECIES	120	stk25b (ENSSGRG00000051411)	septin2 (ENSSGRG00000051409)	SOX14 (ENSSGRG00000051408)	ENSSGRG00000051407	ENSSGRG00000051405	ENSSGRG00000051404	gtf2b (ENSSGRG00000051338)	PKN2 (ENSSGRG00000051335)	zgc:56628 (ENSSGRG00000051334)	hs2st1a (ENSSGRG00000051311)	selenof (ENSSGRG00000051310)	fam110b (ENSSGRG00000051309) #15	cyp7a1 (ENSSGRG00000051306) #17	tox (ENSSGRG00000051305) #20	ca8 (ENSSGRG00000051304) #21	rab2a (ENSSGRG00000051303) #22	CHD7 (ENSSGRG00000051288) #23	fbxl7 (ENSSGRG00000051286)	zgc:55781 (ENSSGRG00000051284)	ralab (ENSSGRG00000051283)	mplkip (ENSSGRG00000051282)	inhbab (ENSSGRG00000051280)	afg3l2 (ENSSGRG00000051233)	plcd1b (ENSSGRG00000051230)	ctdsplb (ENSSGRG00000051196)	hhatla (ENSSGRG00000051180)	klhl40a (ENSSGRG00000051178)	ENSSGRG00000051176	ENSSGRG00000051113	dnajc1 (ENSSGRG00000051106)	bmi1b (ENSSGRG00000051104)
Common carp reference	MODERN SPECIES	21	septin2 (ENSCCRG00000040857)	ENSCCRG00000063662	ENSCCRG00000071158	znf644a (ENSCCRG00000069340)	ENSCCRG00000062608	gtf2b (ENSCCRG00000080102)	PKN2 (ENSCCRG00000012764)	zgc:56628 (ENSCCRG00000054761)	ENSCCRG00000078384	hs2st1a (ENSCCRG00000016267)	selenof (ENSCCRG00000078342)	fam110b (ENSCCRG00000079063) #15	cyp7a1 (ENSCCRG00000055909) #17	tox (ENSCCRG00000056161) #20	ca8 (ENSCCRG00000070510) #21	rab2a (ENSCCRG00000049588) #22	CHD7 (ENSCCRG00000017551) #23	fbxl7 (ENSCCRG00000048817)	mplkip (ENSCCRG00000067845)	zgc:55781 (ENSCCRG00000054754)	inhbab (ENSCCRG00000016474)	afg3l2 (ENSCCRG00000016486)	plcd1b (ENSCCRG00000016599)	ctdsplb (ENSCCRG00000034994)	hhatla (ENSCCRG00000017425)	klhl40a (ENSCCRG00000017538)	ENSCCRG00000078258	ENSCCRG00000016436	dnajc1 (ENSCCRG00000013570)	bmi1b (ENSCCRG00000016417)	ENSCCRG00000012193
Zebrafish	MODERN SPECIES	11	septin2 (ENSDARG00000027590)	ENSDARG00000103087	SOX14 (ENSDARG00000111969)	HFM1 (ENSDARG00000104288)	znf644a (ENSDARG00000101361)	ENSDARG00000103370	gtf2b (ENSDARG00000103578)	PKN2 (ENSDARG00000101983)	zgc:56628 (ENSDARG00000110020)	hs2st1a (ENSDARG00000099478)	selenof (ENSDARG00000099664)	fam110b (ENSDARG00000088073) #15	cyp7a1 (ENSDARG00000069018) #17	tox (ENSDARG00000032317) #20	ca8 (ENSDARG00000039098) #21	rab2a (ENSDARG00000020261) #22	CHD7 (ENSDARG00000075211) #23	fbxl7 (ENSDARG00000062251)	C2H7orf25 (ENSDARG00000057184)	ralab (ENSDARG00000016253)	mplkip (ENSDARG00000078986)	inhbab (ENSDARG00000024759)	afg3l2 (ENSDARG00000062272)	plcd1b (ENSDARG00000034080)	ctdsplb (ENSDARG00000062116)	hhatla (ENSDARG00000039051)	klhl40a (ENSDARG00000039052)	ENSDARG00000057751	ENSDARG00000028878	si:dkey-29d8.3 (ENSDARG00000091879)	dnajc1 (ENSDARG00000001940)
Clupeiformes	ANCESTRAL SPECIES	389										ENSGT00940000158258.f	ENSGT01060000248660	ENSGT00950000183056.B.b #15	ENSGT00940000153141.B.a #17	ENSGT00940000159497 #20	ENSGT00940000158863 #21	ENSGT00940000153886.a.b #22	ENSGT00940000153649.A #23	ENSGT00940000166547	ENSGT00940000156304.c.b #25	ENSGT00940000159203	ENSGT00390000010687.a.a.f
Denticle herring	MODERN SPECIES	14	tyw3 (ENSDCDG00000001555)	lhx8a (ENSDCDG00000001547)	penka (ENSDCDG00000001545) #13	fam110b (ENSDCDG00000001543) #15	cyp7a1 (ENSDCDG00000001541) #17	tox (ENSDCDG00000001537) #20	ENSDCDG00000000679	sdr16c5a (ENSDCDG00000000411) #11	sdr16c5a (ENSDCDG00000000404) #11	penka (ENSDCDG00000000396) #13	bpnt2 (ENSDCDG00000000378)	fam110b (ENSDCDG00000000369) #15	cyp7a1 (ENSDCDG00000000356) #17	tox (ENSDCDG00000000324) #20	ca8 (ENSDCDG00000000282) #21	rab2a (ENSDCDG00000000242) #22	CHD7 (ENSDCDG00000026955) #23	ENSDCDG00000026932	ttpa (ENSDCDG00000026917)	u2surp (ENSDCDG00000026749)	ATR (ENSDCDG00000026671)	cdc20 (ENSDCDG00000026648)	CC2D1B (ENSDCDG00000026643)	ZFYVE9 (ENSDCDG00000026633)	atg9b (ENSDCDG00000026631)	ENSDCDG00000026624	pax3a (ENSDCDG00000026620)	ENSDCDG00000026617	ENSDCDG00000026608	FRMPD1 (ENSDCDG00000026596)	grhprb (ENSDCDG00000026493)
Atlantic herring	MODERN SPECIES	14	bpnt2 (ENSCHAG00000009017)	penka (ENSCHAG00000009045) #13	sdr16c5a (ENSCHAG00000009055) #11	ENSCHAG00000009154	rpap2 (ENSCHAG00000013576)	ENSCHAG00000013593	mtf2 (ENSCHAG00000013616)	wls (ENSCHAG00000013961)	gtf2b (ENSCHAG00000014515)	ENSCHAG00000014638	ENSCHAG00000014652	fam110b (ENSCHAG00000014657) #15	cyp7a1 (ENSCHAG00000014668) #17	tox (ENSCHAG00000014688) #20	ca8 (ENSCHAG00000014697) #21	rab2a (ENSCHAG00000014728) #22	CHD7 (ENSCHAG00000014841) #23	ENSCHAG00000017212 #25	ttpa (ENSCHAG00000017270)	GNAL (ENSCHAG00000017386)	ATR (ENSCHAG00000017869)	ENSCHAG00000018013	ENSCHAG00000018022	ENSCHAG00000018042	ENSCHAG00000018058	ENSCHAG00000018332	lhx8a (ENSCHAG00000018344)	tyw3 (ENSCHAG00000018394)	atg9b (ENSCHAG00000018398)	cdc7 (ENSCHAG00000018418)	glmna (ENSCHAG00000018726)
Elephant shark	MODERN SPECIES	1533					rdh5 (ENSCMIG00000018113)	bloc1s1 (ENSCMIG00000018114)	bpnt2 (ENSCMIG00000018115)	fam110b (ENSCMIG00000018117) #15	ENSCMIG00000018119 #16	CYP7A1 (ENSCMIG00000018123) #17	sdcbp (ENSCMIG00000018125) #18	NSMAF (ENSCMIG00000018202) #19	tox (ENSCMIG00000018306) #20	ENSCMIG00000018308	ca8 (ENSCMIG00000018309) #21	rab2a (ENSCMIG00000018313) #22	CHD7 (ENSCMIG00000018553) #23	CLVS1 (ENSCMIG00000019004) #24	ASPH (ENSCMIG00000019017) #25	nkain4 (ENSCMIG00000019053)	ENSCMIG00000019057	ggh (ENSCMIG00000019063)	ttpa (ENSCMIG00000019069)	ythdf3 (ENSCMIG00000019071)	ENSCMIG00000019074	bhlhe22 (ENSCMIG00000019078)	CYP7B1 (ENSCMIG00000019082) ##17	ENSCMIG00000019086	armc1 (ENSCMIG00000019088)	mtfr1 (ENSCMIG00000019093)	pde7a (ENSCMIG00000000208)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.b #22
Lamprey	MODERN SPECIES	42														ca8 (ENSPMAG00000006273) #21	cpsf2 (ENSPMAG00000006205)	rab2a (ENSPMAG00000006171) #22	RIN2 (ENSPMAG00000006162)	ENSPMAG00000006158	ENSPMAG00000006141	med29 (ENSPMAG00000006132)	srp54 (ENSPMAG00000006078)	CHD9 (ENSPMAG00000006035)	rbl1 (ENSPMAG00000005931)	ENSPMAG00000005922	hnf4g (ENSPMAG00000005852)	lgmn (ENSPMAG00000005811)	pmt (ENSPMAG00000005798)	ENSPMAG00000005688
Ciona	ANCESTRAL SPECIES	1054																ENSGT00940000153886.a.b #22	ENSGT00390000007438
Ciona savignyi	MODERN SPECIES	9	ENSCSAVG00000001804	ENSCSAVG00000001850	ENSCSAVG00000001887	ENSCSAVG00000001894	ENSCSAVG00000001897	ENSCSAVG00000001901	ENSCSAVG00000001910	ENSCSAVG00000002001	ENSCSAVG00000002008	ENSCSAVG00000002055	ENSCSAVG00000002062	ENSCSAVG00000002064	ENSCSAVG00000002066	ENSCSAVG00000002084	ENSCSAVG00000002087	ENSCSAVG00000002088 #22	ENSCSAVG00000002163	ENSCSAVG00000002176	ENSCSAVG00000002181	ENSCSAVG00000002186	ENSCSAVG00000002216	ENSCSAVG00000002224	ENSCSAVG00000002235	ENSCSAVG00000002248	ENSCSAVG00000002258	ENSCSAVG00000002265	ENSCSAVG00000002335	ENSCSAVG00000002336	ENSCSAVG00000002351	ENSCSAVG00000002358	ENSCSAVG00000002374
Ciona intestinalis	MODERN SPECIES	7	ENSCING00000012468	ENSCING00000008978	ENSCING00000019299	ENSCING00000020711	ENSCING00000012470	ENSCING00000012471	ENSCING00000023034	ENSCING00000023796	ENSCING00000016738	ENSCING00000012917	ENSCING00000008991	ENSCING00000008990	ENSCING00000009858	zf(ring)-26 (ENSCING00000008989)	ENSCING00000008988	ENSCING00000019877 #22	ENSCING00000024685	ENSCING00000018311	ENSCING00000008984	ENSCING00000024962	ENSCING00000012455	ENSCING00000009017	ENSCING00000009016	ENSCING00000012460	ENSCING00000012461	ENSCING00000009015	ENSCING00000009013	ENSCING00000022973	ENSCING00000019058	ENSCING00000023943	ENSCING00000023794
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a ##22
Sarcopterygii	ANCESTRAL SPECIES	690													ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22
Tetrapoda	ANCESTRAL SPECIES	101	ENSGT00940000160147	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT00940000160978	ENSGT00390000001141	ENSGT00940000162546	ENSGT00940000160062	ENSGT00940000160783	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00390000018123.a.b	ENSGT00940000159445	ENSGT00940000160206	ENSGT00940000161519	ENSGT00390000000337	ENSGT01030000234574.A.b.b	ENSGT00390000012563	ENSGT00940000160238	ENSGT01090000261033	ENSGT00990000204708	ENSGT00390000006970	ENSGT00950000182966.C.a
Anura	ANCESTRAL SPECIES	141														ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00950000182966.C.b	ENSGT00950000182966.C.a	ENSGT00940000160923	ENSGT00940000160206.h	ENSGT00940000159445	ENSGT00390000018123.a.b	ENSGT00940000161519	ENSGT00390000000337	ENSGT00950000182991.A.b	ENSGT00390000002849	ENSGT00390000006227	ENSGT01030000234574.A.b.b
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000005425	ENSLLEG00000005321	ENSLLEG00000005313	ENSLLEG00000005298	ENSLLEG00000005282	ENSLLEG00000005272	ENSLLEG00000005227	ENSLLEG00000005222	ENSLLEG00000005209	ENSLLEG00000005177	ENSLLEG00000005136	METTL3 (ENSLLEG00000005080)	ENSLLEG00000004974	ENSLLEG00000004943	ENSLLEG00000004937	RAB2B (ENSLLEG00000004919) ##22	CHD8 (ENSLLEG00000004879) ##23	SUPT16H (ENSLLEG00000004817)	ENSLLEG00000004765	ENSLLEG00000004730	ENSLLEG00000004717	ENSLLEG00000004712	ENSLLEG00000004701	ENSLLEG00000004693	ENSLLEG00000004689	ENSLLEG00000004681	ENSLLEG00000004676	ENSLLEG00000004669	ENSLLEG00000004661	NFATC4 (ENSLLEG00000004640)	ENSLLEG00000004626
Frog	MODERN SPECIES		ENSXETG00000038122	ENSXETG00000008029	ENSXETG00000048588	ENSXETG00000046811	or4e2 (ENSXETG00000008031)	ENSXETG00000039024	ENSXETG00000040186	ENSXETG00000026487	ENSXETG00000042499	ENSXETG00000048010	ENSXETG00000042018	ENSXETG00000036510	sall2 (ENSXETG00000017176)	mettl3 (ENSXETG00000017182)	tox4 (ENSXETG00000017183)	rab2b (ENSXETG00000017184) ##22	chd8 (ENSXETG00000017194) ##23	rpgrip1 (ENSXETG00000017215)	supt16h (ENSXETG00000017204)	ENSXETG00000044292	ENSXETG00000041952	ENSXETG00000036646	ENSXETG00000045506	ENSXETG00000046594	ENSXETG00000046818	ENSXETG00000024768	ENSXETG00000017221	ltb4r2 (ENSXETG00000043859)	ltb4r (ENSXETG00000036845)	nfatc4 (ENSXETG00000016887)	ripk3 (ENSXETG00000039906)
Amniota	ANCESTRAL SPECIES	37	ENSGT00940000160062	ENSGT00940000160783	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000160147	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00950000182966.C.b	ENSGT00950000182966.C.a	ENSGT00940000159445	ENSGT00940000160206	ENSGT00940000161519	ENSGT00390000000337	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT00390000006970	ENSGT00990000204708	ENSGT01060000248825	ENSGT00940000160238
Mammalia	ANCESTRAL SPECIES	55	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000160147	ENSGT00940000154455	ENSGT00940000153073	ENSGT00940000163052	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402
Platypus	MODERN SPECIES	4	ENSOANG00000010748	ENSOANG00000001545	ENSOANG00000029424	ENSOANG00000015541	ENSOANG00000044481	ENSOANG00000044334	ENSOANG00000010754	ENSOANG00000040332	ENSOANG00000039204	ENSOANG00000047998	OR4E2 (ENSOANG00000020767)	ENSOANG00000010759	SALL2 (ENSOANG00000039576)	METTL3 (ENSOANG00000044138)	TOX4 (ENSOANG00000045006)	RAB2B (ENSOANG00000021670) ##22	CHD8 (ENSOANG00000041245) ##23	SUPT16H (ENSOANG00000011763)	ENSOANG00000015707	ENSOANG00000007775	ENSOANG00000050602	ENSOANG00000016023	ENSOANG00000047338	ENSOANG00000036331	ENSOANG00000048278	ENSOANG00000000452	ENSOANG00000000453	ENSOANG00000039024	ENSOANG00000014145	ENSOANG00000007516	ENSOANG00000020016
Theria	ANCESTRAL SPECIES	24	ENSGT00940000163224.b.b	ENSGT00940000153130.a.b	ENSGT00900000140957.A	ENSGT00940000163507	ENSGT00940000153073.b.a	ENSGT00940000154455	ENSGT00940000153073.b.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00390000003680.a
Marsupialia	ANCESTRAL SPECIES		ENSGT00900000140957.D.a.b.b.b	ENSGT00900000140957.D.a.b.b.a.a	ENSGT00900000140957.D.a.b.a	ENSGT00900000140957.D.b	ENSGT00940000162998.a	ENSGT00940000153130.a.b.d	ENSGT00940000153073.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000161733	ENSGT00940000163695.a	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.o.b
Opossum	MODERN SPECIES		ENSMODG00000024459	ENSMODG00000048937	ENSMODG00000046933	ENSMODG00000048290	ENSMODG00000045129	ENSMODG00000042579	ENSMODG00000005778	ENSMODG00000043445	ENSMODG00000005980	ENSMODG00000006030	ENSMODG00000045425	ENSMODG00000040563	SALL2 (ENSMODG00000006068)	METTL3 (ENSMODG00000006085)	TOX4 (ENSMODG00000006113)	RAB2B (ENSMODG00000006121) ##22	CHD8 (ENSMODG00000006219) ##23	SUPT16H (ENSMODG00000006539)	ENSMODG00000006568	ENSMODG00000006606	TMEM253 (ENSMODG00000037508)	ZNF219 (ENSMODG00000006620)	ARHGEF40 (ENSMODG00000006660)	ENSMODG00000028432	ENSMODG00000045391	TPPP2 (ENSMODG00000046208)	SLC39A2 (ENSMODG00000006830)	NDRG2 (ENSMODG00000006811)	METTL17 (ENSMODG00000006851)	ENSMODG00000006908	ENSMODG00000046138
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00900000140957.D.a.b.b.a.b	ENSGT00940000153130.a.b.c.a	ENSGT00940000163507.x.b.b	ENSGT00940000153130.a.a.a.a.b	ENSGT00940000153073.b.b.b	ENSGT00940000161790	ENSGT00940000153130.a.a.a.a.a.a	ENSGT00940000163507.x.b.a	ENSGT00940000153130.a.b.c.b	ENSGT01050000244869.a.b.a.ub	ENSGT01050000244869.a.b.a.tb	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695.a	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.o.b	ENSGT00940000157645.b.`b.a
Diprotodontia	ANCESTRAL SPECIES		ENSGT00940000161790	ENSGT00940000153130.a.a.a.a.a.a	ENSGT00940000163507.x.b.a	ENSGT00940000153130.a.b.c.b	ENSGT00940000153130.a.b.d	ENSGT00940000153073.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.ub	ENSGT01050000244869.a.b.a.tb	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000161733	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.o.b	ENSGT00940000157645.b.`b.a
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00940000153073.b.b.b	ENSGT00940000161790	ENSGT00940000153130.a.a.a.a.a.a	ENSGT00940000163507.x.b.a	ENSGT00940000153130.a.b.c.b	ENSGT00940000153073.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.ub	ENSGT01050000244869.a.b.a.tb	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000161733	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b.a	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.o.b	ENSGT00940000157645.b.`b.a
koala	MODERN SPECIES		ENSPCIG00000022007	ENSPCIG00000036888	ENSPCIG00000022004	ENSPCIG00000022002	ENSPCIG00000022000	ENSPCIG00000021998	ENSPCIG00000021996	ENSPCIG00000021993	OR4E1 (ENSPCIG00000021991)	ENSPCIG00000032653	ENSPCIG00000036600	OR10G3 (ENSPCIG00000021983)	SALL2 (ENSPCIG00000034742)	METTL3 (ENSPCIG00000021953)	TOX4 (ENSPCIG00000021950)	RAB2B (ENSPCIG00000021943) ##22	CHD8 (ENSPCIG00000020931) ##23	SUPT16H (ENSPCIG00000020044)	ENSPCIG00000020025	ENSPCIG00000020021	TMEM253 (ENSPCIG00000013303)	ZNF219 (ENSPCIG00000033007)	ARHGEF40 (ENSPCIG00000013300)	ENSPCIG00000035907	ENSPCIG00000028748	TPPP2 (ENSPCIG00000028747)	ENSPCIG00000028749	SLC39A2 (ENSPCIG00000028750)	METTL17 (ENSPCIG00000028751)	ENSPCIG00000028752	ENSPCIG00000028753
Common wonbat	MODERN SPECIES	1107	ENSVURG00010020313	ENSVURG00010020308	ENSVURG00010020304	ENSVURG00010020300	ENSVURG00010020297	ENSVURG00010020292	ENSVURG00010020271	ENSVURG00010020265	OR4E2 (ENSVURG00010020260)	ENSVURG00010020257	ENSVURG00010020254	OR10G3 (ENSVURG00010020251)	SALL2 (ENSVURG00010020245)	METTL3 (ENSVURG00010020238)	TOX4 (ENSVURG00010020228)	RAB2B (ENSVURG00010020222) ##22	CHD8 (ENSVURG00010020171) ##23	SUPT16H (ENSVURG00010020147)	ENSVURG00010020137	ENSVURG00010020109	ENSVURG00010020105	TMEM253 (ENSVURG00010020100)	ZNF219 (ENSVURG00010020096)	ARHGEF40 (ENSVURG00010020084)	RNASE6 (ENSVURG00010020079)	ENSVURG00010020075	TPPP2 (ENSVURG00010020071)	NDRG2 (ENSVURG00010020016)	SLC39A2 (ENSVURG00010019989)	METTL17 (ENSVURG00010019979)	ENSVURG00010019973
Wallaby	MODERN SPECIES	3516														METTL3 (ENSMEUG00000010520)	TOX4 (ENSMEUG00000010501)	RAB2B (ENSMEUG00000010489) ##22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000027112	ENSSHAG00000029889	ENSSHAG00000028958	ENSSHAG00000005857	ENSSHAG00000006673	ENSSHAG00000007103	ENSSHAG00000007256	ENSSHAG00000023234	ENSSHAG00000010313	ENSSHAG00000031291	ENSSHAG00000022450	OR10G3 (ENSSHAG00000009629)	SALL2 (ENSSHAG00000009219)	METTL3 (ENSSHAG00000008993)	TOX4 (ENSSHAG00000008857)	RAB2B (ENSSHAG00000020814) ##22	CHD8 (ENSSHAG00000008118) ##23	SUPT16H (ENSSHAG00000007891)	ENSSHAG00000028510	ENSSHAG00000006145	TMEM253 (ENSSHAG00000004496)	ZNF219 (ENSSHAG00000023355)	ARHGEF40 (ENSSHAG00000003733)	ENSSHAG00000023462	ENSSHAG00000001684	ENSSHAG00000002821	ENSSHAG00000001034	NDRG2 (ENSSHAG00000005988)	ENSSHAG00000005979	ENSSHAG00000005786	ENSSHAG00000004591
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000153130.a.a.b	ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000153073.b.a	ENSGT00940000153130.a.a.b	ENSGT00940000159469.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00900000140957.A.a.a	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000154455.a.a	ENSGT00940000159469.a.a	ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Tree shrew	MODERN SPECIES	5841														METTL3 (ENSTBEG00000013992)	TOX4 (ENSTBEG00000013466)	RAB2B (ENSTBEG00000013358) ##22	CHD8 (ENSTBEG00000012606) ##23	SUPT16H (ENSTBEG00000012237)	ENSTBEG00000011646	ENSTBEG00000011514
Glires	ANCESTRAL SPECIES	12	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Lagomorpha	ANCESTRAL SPECIES	70			ENSGT00940000163052	ENSGT00940000163398	ENSGT00940000153130.a.a.b	ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695.k	ENSGT00940000164606	ENSGT00940000163695.l	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Rabbit	MODERN SPECIES	8	ENSOCUG00000023623	ENSOCUG00000027537	ENSOCUG00000024959	ENSOCUG00000039096	ENSOCUG00000038848	ENSOCUG00000037712	TRAV4 (ENSOCUG00000023519)	OR4E1 (ENSOCUG00000024820)	OR4E2 (ENSOCUG00000024085)	ENSOCUG00000026014	ENSOCUG00000027618	OR10G3 (ENSOCUG00000007578)	SALL2 (ENSOCUG00000027464)	METTL3 (ENSOCUG00000000336)	TOX4 (ENSOCUG00000000334)	RAB2B (ENSOCUG00000000331) ##22	CHD8 (ENSOCUG00000010822) ##23	ENSOCUG00000025687	SUPT16H (ENSOCUG00000010807)	RPGRIP1 (ENSOCUG00000010784)	ENSOCUG00000015029	ENSOCUG00000025483	TMEM253 (ENSOCUG00000026171)	ZNF219 (ENSOCUG00000009922)	ARHGEF40 (ENSOCUG00000009914)	ENSOCUG00000007106	ENSOCUG00000000652	TPPP2 (ENSOCUG00000007102)	NDRG2 (ENSOCUG00000000653)	SLC39A2 (ENSOCUG00000000656)	METTL17 (ENSOCUG00000007094)
Pika	MODERN SPECIES	4037														METTL3 (ENSOPRG00000016187)	TOX4 (ENSOPRG00000016175)	RAB2B (ENSOPRG00000016163) ##22	CHD8 (ENSOPRG00000016120) ##23	SUPT16H (ENSOPRG00000016097)	RPGRIP1 (ENSOPRG00000016067)
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a.h	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000160147.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000164554	ENSGT01080000258996	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.k
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	11	ENSHGLG00000040389	ENSHGLG00000044819	ENSHGLG00000043344	TRAV4 (ENSHGLG00000032789)	ENSHGLG00000020535	OR4E1 (ENSHGLG00000020071)	ENSHGLG00000002001	ENSHGLG00000047111	ENSHGLG00000045446	OR10G2 (ENSHGLG00000020361)	ENSHGLG00000001772	OR10G3 (ENSHGLG00000020251)	SALL2 (ENSHGLG00000006009)	METTL3 (ENSHGLG00000005321)	TOX4 (ENSHGLG00000004570)	ENSHGLG00000004071 ##22	CHD8 (ENSHGLG00000003559) ##23	SUPT16H (ENSHGLG00000003295)	RPGRIP1 (ENSHGLG00000006439)	ENSHGLG00000039864	ENSHGLG00000005772	OR5AU1 (ENSHGLG00000020203)	ENSHGLG00000034860	TMEM253 (ENSHGLG00000004638)	ZNF219 (ENSHGLG00000004299)	ARHGEF40 (ENSHGLG00000003796)	RNASE7 (ENSHGLG00000048768)	RNASE13 (ENSHGLG00000020365)	TPPP2 (ENSHGLG00000003260)	NDRG2 (ENSHGLG00000003227)	SLC39A2 (ENSHGLG00000002511)
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000040329	EIF4E3 (ENSHGLG00000019560)	GPR27 (ENSHGLG00000002574)	PROK2 (ENSHGLG00000046701)	RYBP (ENSHGLG00000040203)	SHQ1 (ENSHGLG00000003637)	GXYLT2 (ENSHGLG00000002778)	PPP4R2 (ENSHGLG00000002829)	PDZRN3 (ENSHGLG00000003072)	ENSHGLG00000041798	ENSHGLG00000041034	ENSHGLG00000038372	ENSHGLG00000003660	ENSHGLG00000032578	ENSHGLG00000002080	ENSHGLG00000042664 ##22	ENSHGLG00000003621	CNTN6 (ENSHGLG00000003847)	ENSHGLG00000038160	CNTN4 (ENSHGLG00000006279)	IL5RA (ENSHGLG00000003211)	ENSHGLG00000003649	CRBN (ENSHGLG00000003957)	ENSHGLG00000002667	LRRN1 (ENSHGLG00000002701)	ENSHGLG00000049868	ENSHGLG00000003230	ENSHGLG00000004549	ENSHGLG00000003679	ENSHGLG00000033324	ENSHGLG00000048183
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000164554	ENSGT00550000075201	ENSGT00940000153073.b.b.b.b.g	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.k
Guinea pig	MODERN SPECIES	13	MRPL52 (ENSCPOG00000009474)	SLC7A7 (ENSCPOG00000005730)	OXA1L (ENSCPOG00000022098)	ENSCPOG00000032843	ABHD4 (ENSCPOG00000000850)	ENSCPOG00000031141	ENSCPOG00000034500	TRDC (ENSCPOG00000000844)	ENSCPOG00000033000	ENSCPOG00000040263	OR4E2 (ENSCPOG00000026054)	OR10G2 (ENSCPOG00000039240)	SALL2 (ENSCPOG00000040220)	METTL3 (ENSCPOG00000002545)	TOX4 (ENSCPOG00000025504)	RAB2B (ENSCPOG00000026575) ##22	CHD8 (ENSCPOG00000002538) ##23	SUPT16H (ENSCPOG00000002534)	RPGRIP1 (ENSCPOG00000002526)	ENSCPOG00000001474	ENSCPOG00000035385	TMEM253 (ENSCPOG00000031716)	ZNF219 (ENSCPOG00000022085)	ARHGEF40 (ENSCPOG00000012862)	ENSCPOG00000034881	RNASE13 (ENSCPOG00000019970)	TPPP2 (ENSCPOG00000023279)	NDRG2 (ENSCPOG00000002625)	ENSCPOG00000031550	ENSCPOG00000027335	ENSCPOG00000035683
Hystricomorpha_b	ANCESTRAL SPECIES	94											ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.l	ENSGT00940000160869.k
Long-tailed chinchilla	MODERN SPECIES	257									TRAV22 (ENSCLAG00000000669)	OR4E2 (ENSCLAG00000017482)	ENSCLAG00000017577	ENSCLAG00000017445	SALL2 (ENSCLAG00000001400)	METTL3 (ENSCLAG00000001316)	TOX4 (ENSCLAG00000002738)	RAB2B (ENSCLAG00000002400) ##22	CHD8 (ENSCLAG00000001966) ##23	SUPT16H (ENSCLAG00000001344)	RPGRIP1 (ENSCLAG00000001164)	ENSCLAG00000000947	OR5AU1 (ENSCLAG00000000791)	TMEM253 (ENSCLAG00000000671)	ENSCLAG00000000612	ARHGEF40 (ENSCLAG00000002038)	RNASE13 (ENSCLAG00000001669)	TPPP2 (ENSCLAG00000001582)	NDRG2 (ENSCLAG00000001892)	SLC39A2 (ENSCLAG00000001512)	METTL17 (ENSCLAG00000000827)	ENSCLAG00000000721	ENSCLAG00000001527
Degu	MODERN SPECIES	391								OR4E1 (ENSODEG00000000587)	ENSODEG00000000533	ENSODEG00000001541	ENSODEG00000001491	SALL2 (ENSODEG00000001454)	ENSODEG00000018698	METTL3 (ENSODEG00000001417)	TOX4 (ENSODEG00000001388)	RAB2B (ENSODEG00000001343) ##22	ENSODEG00000001304	CHD8 (ENSODEG00000001047) ##23	SUPT16H (ENSODEG00000000863)	RPGRIP1 (ENSODEG00000000444)	ENSODEG00000018543	ENSODEG00000000603	ENSODEG00000018586	TMEM253 (ENSODEG00000000578)	ZNF219 (ENSODEG00000000562)	ARHGEF40 (ENSODEG00000000399)	TPPP2 (ENSODEG00000000308)	NDRG2 (ENSODEG00000000287)	SLC39A2 (ENSODEG00000000223)	METTL17 (ENSODEG00000000134)	ENSODEG00000000103
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00940000163398	ENSGT00940000153073.b.b.b.b	ENSGT00900000140957.A.a.a	ENSGT00940000154455.a.a.g.a	ENSGT00940000154455.a.a.h	ENSGT00940000159469.a.a	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000153073.b.b.b.a.f	ENSGT00940000153130.a.b.a.a	ENSGT00940000161790	ENSGT00900000140957.A.a.a.c.a.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00390000012679.p	ENSGT01050000244869.a.b.a.n	ENSGT00960000192631	ENSGT01050000244869.a.b.a.m	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Marmotini_b	ANCESTRAL SPECIES	151							ENSGT00940000163058	ENSGT00940000163275	ENSGT00390000012679.p	ENSGT01050000244869.a.b.a.n	ENSGT01050000244869.a.b.a.m	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.b
Squirrel	MODERN SPECIES	479												OR10G3 (ENSSTOG00000025071)	SALL2 (ENSSTOG00000023637)	METTL3 (ENSSTOG00000001902)	TOX4 (ENSSTOG00000001894)	RAB2B (ENSSTOG00000001886) ##22	CHD8 (ENSSTOG00000001854) ##23	SUPT16H (ENSSTOG00000001834)	RPGRIP1 (ENSSTOG00000001803)	ENSSTOG00000030323	OR5AU1 (ENSSTOG00000006385)	TMEM253 (ENSSTOG00000022112)	ZNF219 (ENSSTOG00000024495)	ARHGEF40 (ENSSTOG00000014945)	ENSSTOG00000021538	RNASE13 (ENSSTOG00000003861)	TPPP2 (ENSSTOG00000003858)	NDRG2 (ENSSTOG00000003841)	SLC39A2 (ENSSTOG00000025598)	METTL17 (ENSSTOG00000003819)	ENSSTOG00000024645
Arctic ground squirrel	MODERN SPECIES	613						ENSUPAG00010002603	OR4E1 (ENSUPAG00010002599)	OR4E2 (ENSUPAG00010002590)	ENSUPAG00010002580	ENSUPAG00010002572	ENSUPAG00010002570	OR10G3 (ENSUPAG00010002567)	SALL2 (ENSUPAG00010002566)	METTL3 (ENSUPAG00010002562)	TOX4 (ENSUPAG00010002554)	RAB2B (ENSUPAG00010002532) ##22	CHD8 (ENSUPAG00010002471) ##23	SUPT16H (ENSUPAG00010002444)	RPGRIP1 (ENSUPAG00010002296)	ENSUPAG00010002289	OR5AU1 (ENSUPAG00010002283)	TMEM253 (ENSUPAG00010002277)	ZNF219 (ENSUPAG00010002256)	ARHGEF40 (ENSUPAG00010002171)	ENSUPAG00010002147	RNASE13 (ENSUPAG00010002141)	TPPP2 (ENSUPAG00010002127)	NDRG2 (ENSUPAG00010002069)	SLC39A2 (ENSUPAG00010002053)	METTL17 (ENSUPAG00010002020)	ENSUPAG00010001989
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000014196	ENSMMMG00000014200	ENSMMMG00000014215	TRAV4 (ENSMMMG00000014220)	OR4E1 (ENSMMMG00000014223)	OR4E2 (ENSMMMG00000014225)	ENSMMMG00000014227	ENSMMMG00000014231	ENSMMMG00000014233	ENSMMMG00000014237	OR10G3 (ENSMMMG00000014244)	SALL2 (ENSMMMG00000014253)	METTL3 (ENSMMMG00000014260)	ENSMMMG00000014287	ENSMMMG00000014292	RAB2B (ENSMMMG00000014305) ##22	CHD8 (ENSMMMG00000014342) ##23	SUPT16H (ENSMMMG00000014425)	RPGRIP1 (ENSMMMG00000014469)	ENSMMMG00000014501	OR5AU1 (ENSMMMG00000014587)	TMEM253 (ENSMMMG00000014590)	ZNF219 (ENSMMMG00000014607)	ARHGEF40 (ENSMMMG00000014640)	ENSMMMG00000014927	ENSMMMG00000014933	RNASE13 (ENSMMMG00000014964)	TPPP2 (ENSMMMG00000014967)	NDRG2 (ENSMMMG00000014971)	SLC39A2 (ENSMMMG00000014994)	METTL17 (ENSMMMG00000014998)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005000503	TRAV9-1 (ENSSVLG00005000520)	ENSSVLG00005000532	ENSSVLG00005000551	ENSSVLG00005000569	TRAV5 (ENSSVLG00005000581)	TRAV4 (ENSSVLG00005000599)	OR4E1 (ENSSVLG00005000616)	OR4E2 (ENSSVLG00005000631)	ENSSVLG00005000642	ENSSVLG00005000656	OR10G3 (ENSSVLG00005000668)	SALL2 (ENSSVLG00005000682)	ENSSVLG00005000700	TOX4 (ENSSVLG00005000736)	ENSSVLG00005000767 ##22	CHD8 (ENSSVLG00005000838) ##23	SUPT16H (ENSSVLG00005000963)	RPGRIP1 (ENSSVLG00005001066)	ENSSVLG00005001219	TMEM253 (ENSSVLG00005001345)	ZNF219 (ENSSVLG00005001360)	ARHGEF40 (ENSSVLG00005001390)	ENSSVLG00005001409	ENSSVLG00005001419	TPPP2 (ENSSVLG00005001429)	NDRG2 (ENSSVLG00005001471)	SLC39A2 (ENSSVLG00005001552)	METTL17 (ENSSVLG00005001571)	ENSSVLG00005001589	ENSSVLG00005001594
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005024578	ENSSVLG00005024564	ENSSVLG00005024554	ENSSVLG00005024537	ENSSVLG00005024507	ENSSVLG00005023841	ENSSVLG00005023599	ENSSVLG00005023529	ENSSVLG00005023495	ENSSVLG00005023451	ENSSVLG00005023417	ENSSVLG00005023357	ENSSVLG00005023220	ENSSVLG00005023143	ENSSVLG00005023127	RAB2B (ENSSVLG00005023112) ##22	ENSSVLG00005023087	ENSSVLG00005023063	ENSSVLG00005022980	ENSSVLG00005022904	ENSSVLG00005022877	ENSSVLG00005022824	ENSSVLG00005022792	ENSSVLG00005022762	ENSSVLG00005022735	ENSSVLG00005022709	LRIG1 (ENSSVLG00005022675)	ENSSVLG00005022656	ENSSVLG00005022646	SLC25A26 (ENSSVLG00005022537)	ENSSVLG00005022516
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005006230	ENSSVLG00005006265	BCKDHB (ENSSVLG00005006295)	TTK (ENSSVLG00005006338)	ELOVL4 (ENSSVLG00005006524)	SH3BGRL2 (ENSSVLG00005006564)	LCA5 (ENSSVLG00005006608)	HMGN3 (ENSSVLG00005006702)	PHIP (ENSSVLG00005006782)	IRAK1BP1 (ENSSVLG00005006952)	ENSSVLG00005006976	MEI4 (ENSSVLG00005006998)	ENSSVLG00005007055	HTR1B (ENSSVLG00005007066)	ENSSVLG00005007097 ##22	ENSSVLG00005007111 ##22	ENSSVLG00005007127	IMPG1 (ENSSVLG00005007176)	ENSSVLG00005007304	MYO6 (ENSSVLG00005007369)	ENSSVLG00005007494	ENSSVLG00005007543	FILIP1 (ENSSVLG00005007573)	TMEM30A (ENSSVLG00005007677)	ENSSVLG00005007826	COL12A1 (ENSSVLG00005007966)	ENSSVLG00005008331	CD109 (ENSSVLG00005008389)	SLC17A5 (ENSSVLG00005008448)	ENSSVLG00005008471	ENSSVLG00005008560
Eurasian red squirrel	MODERN SPECIES	16	TENT5A (ENSSVLG00005006145)	ENSSVLG00005006230	ENSSVLG00005006265	BCKDHB (ENSSVLG00005006295)	TTK (ENSSVLG00005006338)	ELOVL4 (ENSSVLG00005006524)	SH3BGRL2 (ENSSVLG00005006564)	LCA5 (ENSSVLG00005006608)	HMGN3 (ENSSVLG00005006702)	PHIP (ENSSVLG00005006782)	IRAK1BP1 (ENSSVLG00005006952)	ENSSVLG00005006976	MEI4 (ENSSVLG00005006998)	ENSSVLG00005007055	HTR1B (ENSSVLG00005007066)	ENSSVLG00005007097 ##22	ENSSVLG00005007111 ##22	ENSSVLG00005007127	IMPG1 (ENSSVLG00005007176)	ENSSVLG00005007304	MYO6 (ENSSVLG00005007369)	ENSSVLG00005007494	ENSSVLG00005007543	FILIP1 (ENSSVLG00005007573)	TMEM30A (ENSSVLG00005007677)	ENSSVLG00005007826	COL12A1 (ENSSVLG00005007966)	ENSSVLG00005008331	CD109 (ENSSVLG00005008389)	SLC17A5 (ENSSVLG00005008448)	ENSSVLG00005008471
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	RAB15 (ENSSVLG00005000106)	GPX2 (ENSSVLG00005000324)	CHURC1 (ENSSVLG00005000339)	SPTB (ENSSVLG00005000402)	PLEKHG3 (ENSSVLG00005000506)	PPP1R36 (ENSSVLG00005000570)	HSPA2 (ENSSVLG00005000590)	ZBTB1 (ENSSVLG00005000601)	ZBTB25 (ENSSVLG00005000623)	AKAP5 (ENSSVLG00005000634)	MTHFD1 (ENSSVLG00005000661)	ENSSVLG00005000739	ESR2 (ENSSVLG00005000779)	SYNE2 (ENSSVLG00005000961)	ENSSVLG00005001210	ENSSVLG00005001225 ##22	ENSSVLG00005001240	SGPP1 (ENSSVLG00005001258)	WDR89 (ENSSVLG00005001301)	PPP2R5E (ENSSVLG00005001322)	GPHB5 (ENSSVLG00005001358)	RHOJ (ENSSVLG00005001376)	KCNH5 (ENSSVLG00005001424)	ENSSVLG00005001474	SYT16 (ENSSVLG00005001481)	SNAPC1 (ENSSVLG00005001506)	HIF1A (ENSSVLG00005001642)	PRKCH (ENSSVLG00005001876)	TMEM30B (ENSSVLG00005001934)	SLC38A6 (ENSSVLG00005001956)	TRMT5 (ENSSVLG00005002002)
Eurasian red squirrel	MODERN SPECIES	1	SMC4 (ENSSVLG00005012903)	TRIM59 (ENSSVLG00005012821)	KPNA4 (ENSSVLG00005012741)	ARL14 (ENSSVLG00005012716)	PPM1L (ENSSVLG00005012529)	B3GALNT1 (ENSSVLG00005012446)	NMD3 (ENSSVLG00005012256)	SPTSSB (ENSSVLG00005012208)	ENSSVLG00005012166	OTOL1 (ENSSVLG00005012102)	SI (ENSSVLG00005011553)	SLITRK3 (ENSSVLG00005011508)	BCHE (ENSSVLG00005011438)	ENSSVLG00005011397	ENSSVLG00005011309	ENSSVLG00005011251 ##22	ENSSVLG00005016804	ZBBX (ENSSVLG00005016337)	SERPINI2 (ENSSVLG00005016223)	WDR49 (ENSSVLG00005015916)	PDCD10 (ENSSVLG00005015822)	SERPINI1 (ENSSVLG00005015767)	ENSSVLG00005015692	ENSSVLG00005015616	ENSSVLG00005015522	GOLIM4 (ENSSVLG00005015450)	MECOM (ENSSVLG00005014359)	ACTRT3 (ENSSVLG00005014231)	MYNN (ENSSVLG00005014164)	LRRC34 (ENSSVLG00005013923)	LRRIQ4 (ENSSVLG00005013854)
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000154455.a.a.h	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Kangaroo rat	MODERN SPECIES	440											ENSDORG00000025841	ENSDORG00000001673	Sall2 (ENSDORG00000030154)	Mettl3 (ENSDORG00000002212)	ENSDORG00000002207	Rab2b (ENSDORG00000012048) ##22	Chd8 (ENSDORG00000002050) ##23	Supt16 (ENSDORG00000009094)	Rpgrip1 (ENSDORG00000016508)	Hnrnpc (ENSDORG00000012163)	Tmem253 (ENSDORG00000029819)	Zfp219 (ENSDORG00000009814)	Arhgef40 (ENSDORG00000009811)	Rnase13 (ENSDORG00000008166)	Ndrg2 (ENSDORG00000008163)	Slc39a2 (ENSDORG00000008162)	Mettl17 (ENSDORG00000008161)	ENSDORG00000028426
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000154455.a.a.h	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Muroidea	ANCESTRAL SPECIES	36	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000154455.a.a.h	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Upper Galilee mountains blind mole rat	MODERN SPECIES	799											ENSNGAG00000007093	ENSNGAG00000006189	Sall2 (ENSNGAG00000014258)	Mettl3 (ENSNGAG00000000872)	Tox4 (ENSNGAG00000020419)	Rab2b (ENSNGAG00000017091) ##22	Chd8 (ENSNGAG00000022658) ##23	Supt16 (ENSNGAG00000013337)	Rpgrip1 (ENSNGAG00000014737)
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00940000163052	ENSGT00940000163398	ENSGT00940000153130.a.a.b.f.a	ENSGT00940000159469.a.a	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c	ENSGT00940000160869
Murinae	ANCESTRAL SPECIES	16	ENSGT00940000153130.a.a.b.f.b.a.a.b	ENSGT00900000140957.A.a.a.g	ENSGT00940000153073.b.b.b.a.g.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000163058.h	ENSGT00940000163058.g	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c	ENSGT00940000160869
Mus	ANCESTRAL SPECIES	8	ENSGT00900000140957.A.a.a.g	ENSGT00940000153073.b.b.b.a.g.b	ENSGT00940000161790.j	ENSGT00940000159469.a.b.a.d.a	ENSGT00940000162998.b	ENSGT00940000163058.h	ENSGT00940000163058.g	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c.d.a	ENSGT00940000160869
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000154455.a.a.h.a.a.c.a.a.a	ENSGT00940000159469.a.a.g.b	ENSGT00940000159469.a.b.a.c	ENSGT00940000162998.b	ENSGT00940000163058.h	ENSGT00940000163058.g	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b.i	ENSGT01050000244869.a.b.b.j	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c.d.a	ENSGT00940000162253.c.c
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000154455.a.a.h.a.a.c.a.a.a	ENSGT00940000159469.a.a.g.b	ENSGT00940000159469.a.b.a.c	ENSGT00940000162998.b	ENSGT00940000163058.h	ENSGT00940000163058.g	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b.i	ENSGT01050000244869.a.b.b.j	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c.d.a	ENSGT00940000162253.c.c.a.a
Mus_C	ANCESTRAL SPECIES	26	ENSGT00940000153130.a.a.b.f.b.a.a.a.a.a	ENSGT00940000154455.a.a.h.a.a.c.a.a.a	ENSGT00940000159469.a.a.g.b	ENSGT00940000159469.a.b.a.c	ENSGT00940000162998.b	ENSGT00940000163058.h	ENSGT00940000163058.g	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.b.i	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c.d.a	ENSGT00940000162253.c.c.a.a
Steppe mouse	MODERN SPECIES	2587													Sall2 (ENSMSIG00000021304)	Mettl3 (ENSMSIG00000021324)	ENSMSIG00000021362	Rab2b (ENSMSIG00000021385) ##22	Chd8 (ENSMSIG00000021475) ##23	Supt16 (ENSMSIG00000021570)	Rpgrip1 (ENSMSIG00000021617)	Hnrnpc (ENSMSIG00000021798)	Or5au1 (ENSMSIG00000021947)	Zfp219 (ENSMSIG00000021962)	Tmem253 (ENSMSIG00000021992)	Arhgef40 (ENSMSIG00000022029)	Tppp2 (ENSMSIG00000022393)	Ndrg2 (ENSMSIG00000022412)	ENSMSIG00000022449	Slc39a2 (ENSMSIG00000022456)	Mettl17 (ENSMSIG00000022464)	Ear6 (ENSMSIG00000022510)	ENSMSIG00000022516
spretus	MODERN SPECIES	5	Trav6-1 (MGP_SPRETEiJ_G0002340)	Trav5-1 (MGP_SPRETEiJ_G0002339)	MGP_SPRETEiJ_G0002338	MGP_SPRETEiJ_G0002336	MGP_SPRETEiJ_G0002337	Trav2 (MGP_SPRETEiJ_G0002335)	Or4e5 (MGP_SPRETEiJ_G0020138)	Or4e1 (MGP_SPRETEiJ_G0020137)	Or4e2 (MGP_SPRETEiJ_G0020136)	Trav1 (MGP_SPRETEiJ_G0002334)	MGP_SPRETEiJ_G0020135	MGP_SPRETEiJ_G0020134	Sall2 (MGP_SPRETEiJ_G0020133)	Mettl3 (MGP_SPRETEiJ_G0020132)	Tox4 (MGP_SPRETEiJ_G0020131)	Rab2b (MGP_SPRETEiJ_G0020130) ##22	Supt16 (MGP_SPRETEiJ_G0020128)	Rpgrip1 (MGP_SPRETEiJ_G0020127)	Hnrnpc (MGP_SPRETEiJ_G0020126)	Or5au1 (MGP_SPRETEiJ_G0020125)	Tmem253 (MGP_SPRETEiJ_G0020124)	Zfp219 (MGP_SPRETEiJ_G0020123)	Arhgef40 (MGP_SPRETEiJ_G0020122)	Rnase13 (MGP_SPRETEiJ_G0020121)	Tppp2 (MGP_SPRETEiJ_G0020120)	Ndrg2 (MGP_SPRETEiJ_G0020119)	Slc39a2 (MGP_SPRETEiJ_G0020118)	Mettl17 (MGP_SPRETEiJ_G0020117)	MGP_SPRETEiJ_G0020116	MGP_SPRETEiJ_G0020115	MGP_SPRETEiJ_G0020114
Mouse	MODERN SPECIES	5	Trav6-1 (ENSMUSG00000076762)	Trav5-1 (ENSMUSG00000076761)	Trav3-1 (ENSMUSG00000076760)	Trav2 (ENSMUSG00000076759)	Or4e5 (ENSMUSG00000059887)	Or4e1 (ENSMUSG00000057564)	Or4e2 (ENSMUSG00000035626)	Trav1 (ENSMUSG00000076758)	Or10g1 (ENSMUSG00000063106)	Or10g1b (ENSMUSG00000063867)	Or10g3 (ENSMUSG00000094140)	Or10g3b (ENSMUSG00000095030)	Sall2 (ENSMUSG00000049532)	Mettl3 (ENSMUSG00000022160)	Tox4 (ENSMUSG00000016831)	Rab2b (ENSMUSG00000022159) ##22	Chd8 (ENSMUSG00000053754) ##23	Supt16 (ENSMUSG00000035726)	Rpgrip1 (ENSMUSG00000057132)	Hnrnpc (ENSMUSG00000060373)	Or5au1 (ENSMUSG00000044286)	Tmem253 (ENSMUSG00000072571)	Zfp219 (ENSMUSG00000049295)	Arhgef40 (ENSMUSG00000004562)	Rnase13 (ENSMUSG00000068392)	Tppp2 (ENSMUSG00000008813)	Ndrg2 (ENSMUSG00000004558)	Slc39a2 (ENSMUSG00000072572)	Mettl17 (ENSMUSG00000004561)	Ear6 (ENSMUSG00000062148)	AY358078 (ENSMUSG00000050961)
Ryukyu mouse	MODERN SPECIES	5	Trav5-1 (MGP_CAROLIEiJ_G0002218)	MGP_CAROLIEiJ_G0002217	MGP_CAROLIEiJ_G0002216	Trav2 (MGP_CAROLIEiJ_G0002215)	MGP_CAROLIEiJ_G0019248	MGP_CAROLIEiJ_G0019247	Or4e2 (MGP_CAROLIEiJ_G0019246)	Trav1 (MGP_CAROLIEiJ_G0002214)	MGP_CAROLIEiJ_G0019245	MGP_CAROLIEiJ_G0019244	Or10g3 (MGP_CAROLIEiJ_G0019243)	Or10g3b (MGP_CAROLIEiJ_G0019242)	Sall2 (MGP_CAROLIEiJ_G0019241)	Mettl3 (MGP_CAROLIEiJ_G0019240)	Tox4 (MGP_CAROLIEiJ_G0019239)	Rab2b (MGP_CAROLIEiJ_G0019238) ##22	Chd8 (MGP_CAROLIEiJ_G0019237) ##23	Supt16 (MGP_CAROLIEiJ_G0019236)	Rpgrip1 (MGP_CAROLIEiJ_G0019235)	Hnrnpc (MGP_CAROLIEiJ_G0019234)	Tmem253 (MGP_CAROLIEiJ_G0019233)	Zfp219 (MGP_CAROLIEiJ_G0019232)	Arhgef40 (MGP_CAROLIEiJ_G0019231)	Rnase13 (MGP_CAROLIEiJ_G0019230)	Tppp2 (MGP_CAROLIEiJ_G0019229)	Ndrg2 (MGP_CAROLIEiJ_G0019228)	Slc39a2 (MGP_CAROLIEiJ_G0019227)	Mettl17 (MGP_CAROLIEiJ_G0019226)	MGP_CAROLIEiJ_G0019225	MGP_CAROLIEiJ_G0019223	MGP_CAROLIEiJ_G0019224
Shrew mouse	MODERN SPECIES	21	MGP_PahariEiJ_G0002073	MGP_PahariEiJ_G0002072	MGP_PahariEiJ_G0002071	Trav5-1 (MGP_PahariEiJ_G0002070)	MGP_PahariEiJ_G0002069	Trav2 (MGP_PahariEiJ_G0002068)	Or4e5 (MGP_PahariEiJ_G0030267)	Or4e1 (MGP_PahariEiJ_G0030266)	Or4e2 (MGP_PahariEiJ_G0030265)	Trav1 (MGP_PahariEiJ_G0002067)	MGP_PahariEiJ_G0030264	MGP_PahariEiJ_G0030263	Sall2 (MGP_PahariEiJ_G0030262)	Mettl3 (MGP_PahariEiJ_G0030261)	Tox4 (MGP_PahariEiJ_G0030260)	Rab2b (MGP_PahariEiJ_G0030259) ##22	Chd8 (MGP_PahariEiJ_G0030258) ##23	Rpgrip1 (MGP_PahariEiJ_G0030257)	Hnrnpc (MGP_PahariEiJ_G0030256)	Or5au1 (MGP_PahariEiJ_G0030255)	Tmem253 (MGP_PahariEiJ_G0030254)	Zfp219 (MGP_PahariEiJ_G0030253)	Arhgef40 (MGP_PahariEiJ_G0030252)	Rnase13 (MGP_PahariEiJ_G0030251)	Tppp2 (MGP_PahariEiJ_G0030250)	Ndrg2 (MGP_PahariEiJ_G0030249)	Slc39a2 (MGP_PahariEiJ_G0030248)	Mettl17 (MGP_PahariEiJ_G0030247)	MGP_PahariEiJ_G0030246	Rnase1 (MGP_PahariEiJ_G0030245)	Rnase6 (MGP_PahariEiJ_G0030244)
Rat	MODERN SPECIES	6	ENSRNOG00000064504	Trav6-2 (ENSRNOG00000054269)	ENSRNOG00000066599	ENSRNOG00000069821	Trav2 (ENSRNOG00000062840)	Or4e5 (ENSRNOG00000062532)	Or4e1 (ENSRNOG00000039435)	Or4e2 (ENSRNOG00000063163)	Or10g1 (ENSRNOG00000066413)	Or10g1b (ENSRNOG00000070770)	Or10g3 (ENSRNOG00000069587)	Or10g3c (ENSRNOG00000064358)	Sall2 (ENSRNOG00000013287)	Mettl3 (ENSRNOG00000013111)	Tox4 (ENSRNOG00000012844)	Rab2b (ENSRNOG00000012488) ##22	Chd8 (ENSRNOG00000025011) ##23	Supt16h (ENSRNOG00000011953)	Rpgrip1 (ENSRNOG00000011809)	LOC100911576 (ENSRNOG00000011621)	Or5au1 (ENSRNOG00000068357)	LOC690384 (ENSRNOG00000039487)	Tmem253 (ENSRNOG00000039489)	Zfp219 (ENSRNOG00000011544)	Arhgef40 (ENSRNOG00000052354)	Rnase13 (ENSRNOG00000039500)	Tppp2 (ENSRNOG00000025473)	Ndrg2 (ENSRNOG00000010389)	Slc39a2 (ENSRNOG00000010375)	Mettl17 (ENSRNOG00000025512)	Ear1 (ENSRNOG00000062969)
Cricetidae	ANCESTRAL SPECIES	15	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c	ENSGT00940000160869
Cricetidae_B	ANCESTRAL SPECIES	11	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000164554	ENSGT01020000232693	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b	ENSGT00940000153402.d.r.a	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c
Northern American deer mouse	MODERN SPECIES	22	ENSPEMG00000027267	ENSPEMG00000030449	ENSPEMG00000025936	Trav2 (ENSPEMG00000028732)	ENSPEMG00000025264	ENSPEMG00000025281	ENSPEMG00000027316	Or4e2 (ENSPEMG00000030714)	Or10g1 (ENSPEMG00000025206)	Or10g1b (ENSPEMG00000027951)	ENSPEMG00000029194	ENSPEMG00000030648	Sall2 (ENSPEMG00000022293)	Mettl3 (ENSPEMG00000005043)	Tox4 (ENSPEMG00000016816)	Rab2b (ENSPEMG00000026027) ##22	Chd8 (ENSPEMG00000022977) ##23	Supt16 (ENSPEMG00000000240)	Rpgrip1 (ENSPEMG00000003267)	Hnrnpc (ENSPEMG00000017899)	Or5au1 (ENSPEMG00000026100)	Tmem253 (ENSPEMG00000023613)	Zfp219 (ENSPEMG00000014102)	Arhgef40 (ENSPEMG00000024242)	Rnase13 (ENSPEMG00000006492)	Tppp2 (ENSPEMG00000014496)	Ndrg2 (ENSPEMG00000016941)	Slc39a2 (ENSPEMG00000001593)	Mettl17 (ENSPEMG00000022743)	ENSPEMG00000023630	Rnase1 (ENSPEMG00000014451)
Prairie vole	MODERN SPECIES	174										ENSMOCG00000002178	ENSMOCG00000022607	ENSMOCG00000022484	Sall2 (ENSMOCG00000003410)	Mettl3 (ENSMOCG00000005884)	Tox4 (ENSMOCG00000007311)	Rab2b (ENSMOCG00000013161) ##22	Chd8 (ENSMOCG00000013700) ##23	Supt16 (ENSMOCG00000014121)	ENSMOCG00000000454	ENSMOCG00000020993	Or5au1 (ENSMOCG00000012684)	Tmem253 (ENSMOCG00000001720)	Zfp219 (ENSMOCG00000005691)	Arhgef40 (ENSMOCG00000015609)	Rnase13 (ENSMOCG00000003092)	Tppp2 (ENSMOCG00000016211)	Ndrg2 (ENSMOCG00000004476)	Slc39a2 (ENSMOCG00000002728)	Mettl17 (ENSMOCG00000016682)	Rnase1 (ENSMOCG00000006631)	Rnase4 (ENSMOCG00000013274)
Cricetinae	ANCESTRAL SPECIES	35								ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.p	ENSGT01050000244869.a.b.a.o	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.r.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.c.a	ENSGT00940000160869
Golden Hamster	MODERN SPECIES	862													Sall2 (ENSMAUG00000013964)	Mettl3 (ENSMAUG00000014244)	Tox4 (ENSMAUG00000018009)	Rab2b (ENSMAUG00000013413) ##22	Chd8 (ENSMAUG00000015827) ##23	ENSMAUG00000020001	Rpgrip1 (ENSMAUG00000005402)	Hnrnpc (ENSMAUG00000000739)	Tmem253 (ENSMAUG00000019113)	Zfp219 (ENSMAUG00000021100)	Arhgef40 (ENSMAUG00000009721)	Rnase13 (ENSMAUG00000019685)	Tppp2 (ENSMAUG00000020669)	Ndrg2 (ENSMAUG00000000500)	Slc39a2 (ENSMAUG00000000625)	Mettl17 (ENSMAUG00000008709)	ENSMAUG00000016887
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	238	ENSCGRG00001015121	ENSCGRG00001006224	ENSCGRG00001015204	ENSCGRG00001015157	ENSCGRG00001015153	ENSCGRG00001015359	ENSCGRG00001006366	ENSCGRG00001014981	Or4e2 (ENSCGRG00001015850)	Or10g1 (ENSCGRG00001014915)	Or10g1b (ENSCGRG00001014950)	ENSCGRG00001014905	Sall2 (ENSCGRG00001000154)	Mettl3 (ENSCGRG00001022645)	Tox4 (ENSCGRG00001020951)	Rab2b (ENSCGRG00001020833) ##22	Chd8 (ENSCGRG00001014351) ##23	Supt16 (ENSCGRG00001011339)	Rpgrip1 (ENSCGRG00001007915)	Hnrnpc (ENSCGRG00001004415)	Or5au1 (ENSCGRG00001014408)	Tmem253 (ENSCGRG00001020106)	Zfp219 (ENSCGRG00001019627)	Arhgef40 (ENSCGRG00001017660)	Rnase13 (ENSCGRG00001015473)	Tppp2 (ENSCGRG00001015302)	Ndrg2 (ENSCGRG00001013843)	Slc39a2 (ENSCGRG00001012134)	Mettl17 (ENSCGRG00001010750)	ENSCGRG00001009946	Ear10 (ENSCGRG00001015041)
Chinese hamster chok1gshd	MODERN SPECIES	130	Myo18b (ENSCGRG00001019146)	Sez6l (ENSCGRG00001015352)	Ccdc121rt2 (ENSCGRG00001009948)	Asphd2 (ENSCGRG00001001582)	Hps4 (ENSCGRG00001012193)	Ccdc121rt3 (ENSCGRG00001012434)	Srrd (ENSCGRG00001017695)	Tfip11 (ENSCGRG00001013439)	Tpst2 (ENSCGRG00001022177)	Crybb1 (ENSCGRG00001000356)	Cryba4 (ENSCGRG00001015520)	Mn1 (ENSCGRG00001003163)	Pitpnb (ENSCGRG00001008552)	Ttc28 (ENSCGRG00001021411)	Chek2 (ENSCGRG00001000569)	ENSCGRG00001023913 ##22	Hscb (ENSCGRG00001005748)	Ulk1 (ENSCGRG00001020729)	Pus1 (ENSCGRG00001019592)	Ep400 (ENSCGRG00001013148)	Ddx51 (ENSCGRG00001007401)	Noc4l (ENSCGRG00001004291)	Galnt9 (ENSCGRG00001017127)	Fbrsl1 (ENSCGRG00001017064)	Lrcol1 (ENSCGRG00001024930)	P2rx2 (ENSCGRG00001020311)	Pole (ENSCGRG00001009740)	Pxmp2 (ENSCGRG00001020745)	Pgam5 (ENSCGRG00001023531)	Ankle2 (ENSCGRG00001015292)	Golga3 (ENSCGRG00001024610)
Primates	ANCESTRAL SPECIES	2	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000153073.b.b.b.a.d.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000153073.b.b.b.b	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Mouse lemur	MODERN SPECIES	22	DAD1 (ENSMICG00000012690)	ENSMICG00000045157	TRAV34 (ENSMICG00000047656)	ENSMICG00000048028	TRAV21 (ENSMICG00000042869)	ENSMICG00000036456	TRAV9-2 (ENSMICG00000047919)	ENSMICG00000044028	TRAV9-1 (ENSMICG00000045305)	ENSMICG00000026679	TRAV3 (ENSMICG00000041451)	OR10G3 (ENSMICG00000045513)	SALL2 (ENSMICG00000046438)	METTL3 (ENSMICG00000015037)	TOX4 (ENSMICG00000014965)	RAB2B (ENSMICG00000014937) ##22	CHD8 (ENSMICG00000007735) ##23	SUPT16H (ENSMICG00000007715)	RPGRIP1 (ENSMICG00000007694)	ENSMICG00000007682	OR5AU1 (ENSMICG00000038048)	TMEM253 (ENSMICG00000027606)	ZNF219 (ENSMICG00000032662)	ARHGEF40 (ENSMICG00000016880)	NDRG2 (ENSMICG00000016864)	TPPP2 (ENSMICG00000037436)	SLC39A2 (ENSMICG00000046473)	METTL17 (ENSMICG00000013660)	RNASE12 (ENSMICG00000016904)	ENSMICG00000031022	PNP (ENSMICG00000027048)
Lemuriformes_a	ANCESTRAL SPECIES	1	ENSGT00940000153073.b.b.b.b	ENSGT00940000153130.a.a.b	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Greater bamboo lemur	MODERN SPECIES	651	ENSPSMG00000010344	ENSPSMG00000010341	ENSPSMG00000010332	TRAV9-1 (ENSPSMG00000010329)	ENSPSMG00000010323	ENSPSMG00000010317	TRAV3 (ENSPSMG00000010309)	OR4E1 (ENSPSMG00000010304)	OR4E2 (ENSPSMG00000010299)	ENSPSMG00000010294	ENSPSMG00000010284	OR10G3 (ENSPSMG00000010280)	SALL2 (ENSPSMG00000010278)	METTL3 (ENSPSMG00000010267)	TOX4 (ENSPSMG00000010229)	RAB2B (ENSPSMG00000010185) ##22	CHD8 (ENSPSMG00000010033) ##23	SUPT16H (ENSPSMG00000009829)	ENSPSMG00000009795
Coquerels sifaka	MODERN SPECIES	424	SLC7A7 (ENSPCOG00000015863)	OXA1L (ENSPCOG00000024151)	ENSPCOG00000012865	ABHD4 (ENSPCOG00000000567)	DAD1 (ENSPCOG00000012877)	ENSPCOG00000015924	TRAV18 (ENSPCOG00000013294)	TRAV9-1 (ENSPCOG00000009429)	TRAV8-3 (ENSPCOG00000013652)	TRAV3 (ENSPCOG00000013386)	TRAV2 (ENSPCOG00000013662)	OR10G2 (ENSPCOG00000008398)	SALL2 (ENSPCOG00000017266)	METTL3 (ENSPCOG00000024390)	TOX4 (ENSPCOG00000021038)	ENSPCOG00000026999 ##22	CHD8 (ENSPCOG00000014628) ##23	SUPT16H (ENSPCOG00000006812)	RPGRIP1 (ENSPCOG00000024495)	ENSPCOG00000022866	ENSPCOG00000014804	OR5AU1 (ENSPCOG00000024167)	TMEM253 (ENSPCOG00000017428)	ZNF219 (ENSPCOG00000024510)	ARHGEF40 (ENSPCOG00000017688)	NDRG2 (ENSPCOG00000025622)	TPPP2 (ENSPCOG00000018561)	SLC39A2 (ENSPCOG00000016084)	METTL17 (ENSPCOG00000024629)	ANG (ENSPCOG00000013248)	PNP (ENSPCOG00000023019)
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	391		ENSOGAG00000032861	ENSOGAG00000029196	TRAV9-1 (ENSOGAG00000028521)	TRAV5 (ENSOGAG00000032788)	ENSOGAG00000028863	ENSOGAG00000025168	OR4E1 (ENSOGAG00000032302)	OR4E2 (ENSOGAG00000026485)	ENSOGAG00000034862	ENSOGAG00000033431	OR10G3 (ENSOGAG00000006229)	SALL2 (ENSOGAG00000031464)	METTL3 (ENSOGAG00000002730)	TOX4 (ENSOGAG00000002729)	ENSOGAG00000002728 ##22	CHD8 (ENSOGAG00000002722) ##23	SUPT16H (ENSOGAG00000012898)	RPGRIP1 (ENSOGAG00000012890)	ENSOGAG00000012543	OR5AU1 (ENSOGAG00000024751)	TMEM253 (ENSOGAG00000029145)	ZNF219 (ENSOGAG00000027894)	ARHGEF40 (ENSOGAG00000000045)	ENSOGAG00000001147	ENSOGAG00000033773	ENSOGAG00000003657	NDRG2 (ENSOGAG00000014259)	ENSOGAG00000026219	ENSOGAG00000032016	ENSOGAG00000027626
Bushbaby	MODERN SPECIES	173	TOX3 (ENSOGAG00000009531)	CHD9 (ENSOGAG00000002110)	RBL2 (ENSOGAG00000014491)	AKTIP (ENSOGAG00000014495)	RPGRIP1L (ENSOGAG00000005128)	FTO (ENSOGAG00000005135)	IRX3 (ENSOGAG00000029236)	IRX5 (ENSOGAG00000004133)	IRX6 (ENSOGAG00000026649)	MMP2 (ENSOGAG00000030370)	LPCAT2 (ENSOGAG00000004221)	SLC6A2 (ENSOGAG00000004224)	ENSOGAG00000012518	ENSOGAG00000014900	CES5A (ENSOGAG00000012524)	ENSOGAG00000030943 ##22	ENSOGAG00000027139	AMFR (ENSOGAG00000014884)	NUDT21 (ENSOGAG00000014888)	OGFOD1 (ENSOGAG00000014894)	BBS2 (ENSOGAG00000014898)	MT3 (ENSOGAG00000004806)	ENSOGAG00000027659	ENSOGAG00000008587	MT1X (ENSOGAG00000004805)	NUP93 (ENSOGAG00000008589)	SLC12A3 (ENSOGAG00000008596)	HERPUD1 (ENSOGAG00000005933)	NLRC5 (ENSOGAG00000005936)	CPNE2 (ENSOGAG00000005942)	PSME3IP1 (ENSOGAG00000026875)
Haplorrhini	ANCESTRAL SPECIES	17	ENSGT00940000163224.b.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Tarsier	MODERN SPECIES	5156														METTL3 (ENSTSYG00000012483)	TOX4 (ENSTSYG00000033201)	RAB2B (ENSTSYG00000033832) ##22	CHD8 (ENSTSYG00000011939) ##23	SUPT16H (ENSTSYG00000011906)	RPGRIP1 (ENSTSYG00000011834)
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000163906	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.d	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.h	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869	ENSGT00940000161733
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000163906	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.d	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.h	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869	ENSGT00940000161733
Marmoset	MODERN SPECIES	1	TRAV10 (ENSCJAG00000046511)	TRAV9-1 (ENSCJAG00000046547)	ENSCJAG00000070156	ENSCJAG00000057834	TRAV4 (ENSCJAG00000062247)	TRAV3 (ENSCJAG00000008831)	TRAV2 (ENSCJAG00000045760)	OR4E1 (ENSCJAG00000056301)	OR10G2 (ENSCJAG00000008845)	OR10G3 (ENSCJAG00000023226)	ENSCJAG00000073391	SALL2 (ENSCJAG00000008855)	METTL3 (ENSCJAG00000008893)	TOX4 (ENSCJAG00000008956)	ENSCJAG00000023227	RAB2B (ENSCJAG00000008981) ##22	CHD8 (ENSCJAG00000009002) ##23	SUPT16H (ENSCJAG00000009196)	ENSCJAG00000063290	RPGRIP1 (ENSCJAG00000009298)	ENSCJAG00000009354	TMEM253 (ENSCJAG00000047766)	ZNF219 (ENSCJAG00000047622)	ARHGEF40 (ENSCJAG00000009398)	TPPP2 (ENSCJAG00000009590)	NDRG2 (ENSCJAG00000009450)	SLC39A2 (ENSCJAG00000009600)	METTL17 (ENSCJAG00000009609)	ENSCJAG00000074018	ENSCJAG00000009638	RNASE1 (ENSCJAG00000009640)
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000159469.a.b.b	ENSGT00940000153073.b.b.b.b.i.a	ENSGT00940000153130.a.a.b.a.a	ENSGT00940000153073.b.b.b.a.c	ENSGT00940000153130.a.a.b.a.b	ENSGT00940000163906	ENSGT00940000154455.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.h	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.b	ENSGT00940000153402.c.b.a.b.a.b.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000156452
Bolivian squirrel monkey	MODERN SPECIES	52	TRAV26-1 (ENSSBOG00000018975)	ENSSBOG00000019528	TRAV22 (ENSSBOG00000027440)	TRAV21 (ENSSBOG00000008898)	TRAV12-3 (ENSSBOG00000007472)	TRAV8-3 (ENSSBOG00000035186)	TRAV12-1 (ENSSBOG00000019726)	TRAV10 (ENSSBOG00000004849)	TRAV9-1 (ENSSBOG00000008479)	TRAV4 (ENSSBOG00000017635)	TRAV3 (ENSSBOG00000011443)	TRAV1-2 (ENSSBOG00000007658)	SALL2 (ENSSBOG00000028539)	METTL3 (ENSSBOG00000030649)	TOX4 (ENSSBOG00000026645)	RAB2B (ENSSBOG00000034839) ##22	CHD8 (ENSSBOG00000023442) ##23	SUPT16H (ENSSBOG00000005521)	RPGRIP1 (ENSSBOG00000022970)	ENSSBOG00000024757	ENSSBOG00000013901	TMEM253 (ENSSBOG00000033526)	ZNF219 (ENSSBOG00000035585)	ARHGEF40 (ENSSBOG00000023831)	NDRG2 (ENSSBOG00000018409)	RNASE8 (ENSSBOG00000035350)	TPPP2 (ENSSBOG00000020635)	SLC39A2 (ENSSBOG00000031319)	METTL17 (ENSSBOG00000020679)	ENSSBOG00000007632	RNASE4 (ENSSBOG00000033190)
Capuchin	MODERN SPECIES	170	ENSCCAG00000023263	TRAV8-6 (ENSCCAG00000018589)	TRAV12-3 (ENSCCAG00000032026)	TRAV13-1 (ENSCCAG00000020246)	ENSCCAG00000016996	TRAV10 (ENSCCAG00000018262)	TRAV9-1 (ENSCCAG00000020288)	TRAV3 (ENSCCAG00000000672)	TRAV2 (ENSCCAG00000000779)	OR4E2 (ENSCCAG00000002899)	TRAV1-2 (ENSCCAG00000000750)	SALL2 (ENSCCAG00000033278)	ENSCCAG00000028469	METTL3 (ENSCCAG00000034042)	ENSCCAG00000032861	RAB2B (ENSCCAG00000028745) ##22	CHD8 (ENSCCAG00000020467) ##23	SUPT16H (ENSCCAG00000033726)	RPGRIP1 (ENSCCAG00000033796)	ENSCCAG00000035141
Mas night monkey	MODERN SPECIES	819	TRAV18 (ENSANAG00000012778)	TRAV16 (ENSANAG00000014372)	TRAV8-6 (ENSANAG00000012873)	TRAV12-2 (ENSANAG00000013431)	TRAV13-1 (ENSANAG00000011314)	TRAV8-3 (ENSANAG00000014915)	ENSANAG00000020555	TRAV12-1 (ENSANAG00000010423)	TRAV10 (ENSANAG00000011778)	TRAV9-1 (ENSANAG00000011575)	TRAV2 (ENSANAG00000011220)	TRAV1-2 (ENSANAG00000016314)	SALL2 (ENSANAG00000031405)	METTL3 (ENSANAG00000031748)	TOX4 (ENSANAG00000029797)	RAB2B (ENSANAG00000018900) ##22	CHD8 (ENSANAG00000037714) ##23	SUPT16H (ENSANAG00000030852)	RPGRIP1 (ENSANAG00000033195)	HNRNPC (ENSANAG00000034906)	TMEM253 (ENSANAG00000037230)	ZNF219 (ENSANAG00000035689)	ARHGEF40 (ENSANAG00000036300)	RNASE8 (ENSANAG00000010473)	TPPP2 (ENSANAG00000025571)	NDRG2 (ENSANAG00000019531)	SLC39A2 (ENSANAG00000034993)	METTL17 (ENSANAG00000036041)	ENSANAG00000014479	OR6S1 (ENSANAG00000033842)	PNP (ENSANAG00000025497)
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT01050000244869.a.b.a	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495.g	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Gibbon	MODERN SPECIES	14	ENSNLEG00000029329	ENSNLEG00000030728	ENSNLEG00000034865	ENSNLEG00000031915	ENSNLEG00000014605	ENSNLEG00000028142	OR4E1 (ENSNLEG00000019287)	OR4E2 (ENSNLEG00000019286)	TRAV1-2 (ENSNLEG00000029304)	ENSNLEG00000032126	ENSNLEG00000028643	ENSNLEG00000029505	SALL2 (ENSNLEG00000014602)	METTL3 (ENSNLEG00000014569)	TOX4 (ENSNLEG00000014556)	RAB2B (ENSNLEG00000014534) ##22	CHD8 (ENSNLEG00000014445) ##23	SUPT16H (ENSNLEG00000014392)	RPGRIP1 (ENSNLEG00000014366)	ENSNLEG00000014362	ENSNLEG00000034351	TMEM253 (ENSNLEG00000014354)	ZNF219 (ENSNLEG00000014346)	ARHGEF40 (ENSNLEG00000014282)	NDRG2 (ENSNLEG00000014056)	TPPP2 (ENSNLEG00000014275)	SLC39A2 (ENSNLEG00000014041)	METTL17 (ENSNLEG00000013973)	ENSNLEG00000029047	RNASE4 (ENSNLEG00000031833)	ENSNLEG00000011037
Hominidae	ANCESTRAL SPECIES	14	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495.g	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Orangutan	MODERN SPECIES	5	TRAV8-1 (ENSPPYG00000005611)	ENSPPYG00000005610	ENSPPYG00000005608	ENSPPYG00000030348	ENSPPYG00000005607	OR4E1 (ENSPPYG00000031613)	OR4E2 (ENSPPYG00000005606)	ENSPPYG00000034376	OR10G2 (ENSPPYG00000006246)	TRAV1-1 (ENSPPYG00000035664)	OR10G3 (ENSPPYG00000005603)	SALL2 (ENSPPYG00000005600)	ENSPPYG00000030209	METTL3 (ENSPPYG00000005599)	TOX4 (ENSPPYG00000005598)	RAB2B (ENSPPYG00000005597) ##22	CHD8 (ENSPPYG00000005596) ##23	SUPT16H (ENSPPYG00000005595)	RPGRIP1 (ENSPPYG00000005594)	HNRNPC (ENSPPYG00000005593)	TMEM253 (ENSPPYG00000034239)	ZNF219 (ENSPPYG00000005590)	ARHGEF40 (ENSPPYG00000005589)	RNASE8 (ENSPPYG00000005588)	RNASE7 (ENSPPYG00000005587)	TPPP2 (ENSPPYG00000038240)	NDRG2 (ENSPPYG00000005584)	SLC39A2 (ENSPPYG00000005583)	METTL17 (ENSPPYG00000005582)	RNASE2 (ENSPPYG00000005580)	ENSPPYG00000005579
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00390000018145.cb.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495.g	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Gorilla	MODERN SPECIES	5	ENSGGOG00000038120	ENSGGOG00000037959	ENSGGOG00000039878	TRAV4 (ENSGGOG00000040763)	TRAV3 (ENSGGOG00000043947)	OR4E1 (ENSGGOG00000026059)	OR4E2 (ENSGGOG00000027887)	TRAV1-2 (ENSGGOG00000039534)	TRAV1-1 (ENSGGOG00000037205)	OR10G2 (ENSGGOG00000024711)	OR10G3 (ENSGGOG00000024301)	ENSGGOG00000002390	SALL2 (ENSGGOG00000009133)	METTL3 (ENSGGOG00000005954)	TOX4 (ENSGGOG00000014655)	RAB2B (ENSGGOG00000014650) ##22	CHD8 (ENSGGOG00000002251) ##23	SUPT16H (ENSGGOG00000002243)	RPGRIP1 (ENSGGOG00000010820)	HNRNPC (ENSGGOG00000023015)	ENSGGOG00000043135	OR5AU1 (ENSGGOG00000004152)	TMEM253 (ENSGGOG00000023411)	ZNF219 (ENSGGOG00000007177)	ARHGEF40 (ENSGGOG00000007165)	NDRG2 (ENSGGOG00000005203)	RNASE7 (ENSGGOG00000042974)	TPPP2 (ENSGGOG00000005210)	SLC39A2 (ENSGGOG00000013401)	METTL17 (ENSGGOG00000013391)	RNASE2 (ENSGGOG00000043975)
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT01050000244869.a.b.a.b	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a.a.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495.g	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Human	MODERN SPECIES	5	TRAV7 (ENSG00000211781)	TRAV6 (ENSG00000211780)	TRAV5 (ENSG00000211779)	TRAV4 (ENSG00000211778)	TRAV3 (ENSG00000211777)	TRAV2 (ENSG00000211776)	OR4E1 (ENSG00000276240)	OR4E2 (ENSG00000221977)	TRAV1-2 (ENSG00000256553)	OR10G2 (ENSG00000255582)	TRAV1-1 (ENSG00000255569)	OR10G3 (ENSG00000169208)	SALL2 (ENSG00000165821)	METTL3 (ENSG00000165819)	TOX4 (ENSG00000092203)	RAB2B (ENSG00000129472) ##22	CHD8 (ENSG00000100888) ##23	SUPT16H (ENSG00000092201)	RPGRIP1 (ENSG00000092200)	HNRNPC (ENSG00000092199)	OR5AU1 (ENSG00000169327)	TMEM253 (ENSG00000232070)	ZNF219 (ENSG00000165804)	ARHGEF40 (ENSG00000165801)	RNASE8 (ENSG00000173431)	RNASE7 (ENSG00000165799)	RNASE13 (ENSG00000206150)	TPPP2 (ENSG00000179636)	NDRG2 (ENSG00000165795)	SLC39A2 (ENSG00000165794)	METTL17 (ENSG00000165792)
Pan	ANCESTRAL SPECIES	8	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.a	ENSGT01050000244869.a.b.a.b	ENSGT00940000160183.d.b.b	ENSGT00540000070023.c.a.b.k	ENSGT01050000244869.a.b.a.a.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.i.a.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495.g	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Bonobo	MODERN SPECIES	5	ENSPPAG00000004995	ENSPPAG00000031024	ENSPPAG00000025805	TRAV4 (ENSPPAG00000024213)	OR4E1 (ENSPPAG00000014053)	OR4E2 (ENSPPAG00000005525)	TRAV1-2 (ENSPPAG00000007656)	TRAV1-1 (ENSPPAG00000008095)	ENSPPAG00000042979	ENSPPAG00000007794	OR10G3 (ENSPPAG00000014545)	ENSPPAG00000029016	SALL2 (ENSPPAG00000038242)	METTL3 (ENSPPAG00000039056)	TOX4 (ENSPPAG00000036246)	RAB2B (ENSPPAG00000035840) ##22	CHD8 (ENSPPAG00000039987) ##23	SUPT16H (ENSPPAG00000010501)	RPGRIP1 (ENSPPAG00000034904)	ENSPPAG00000034008	ENSPPAG00000027863	OR5AU1 (ENSPPAG00000008987)	TMEM253 (ENSPPAG00000028341)	ZNF219 (ENSPPAG00000035977)	ARHGEF40 (ENSPPAG00000031057)	RNASE8 (ENSPPAG00000022422)	RNASE7 (ENSPPAG00000033312)	TPPP2 (ENSPPAG00000040174)	NDRG2 (ENSPPAG00000038771)	SLC39A2 (ENSPPAG00000033603)	METTL17 (ENSPPAG00000032050)
Chimpanzee	MODERN SPECIES	5	ENSPTRG00000052702	ENSPTRG00000050303	ENSPTRG00000046090	OR4E1 (ENSPTRG00000047914)	OR4E2 (ENSPTRG00000041296)	TRAV1-2 (ENSPTRG00000052361)	ENSPTRG00000048996	TRAV1-1 (ENSPTRG00000049725)	ENSPTRG00000047156	ENSPTRG00000048781	OR10G3 (ENSPTRG00000006130)	ENSPTRG00000049405	SALL2 (ENSPTRG00000006128)	METTL3 (ENSPTRG00000006127)	TOX4 (ENSPTRG00000006126)	ENSPTRG00000006125 ##22	CHD8 (ENSPTRG00000006124) ##23	SUPT16H (ENSPTRG00000006122)	RPGRIP1 (ENSPTRG00000006120)	HNRNPC (ENSPTRG00000006118)	ENSPTRG00000043542	OR5AU1 (ENSPTRG00000006116)	TMEM253 (ENSPTRG00000039935)	ZNF219 (ENSPTRG00000006114)	ARHGEF40 (ENSPTRG00000006113)	RNASE8 (ENSPTRG00000030802)	RNASE7 (ENSPTRG00000048912)	TPPP2 (ENSPTRG00000030804)	NDRG2 (ENSPTRG00000006110)	SLC39A2 (ENSPTRG00000006109)	METTL17 (ENSPTRG00000006108)
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b
Rhinopithecus	ANCESTRAL SPECIES	74	ENSGT00940000154455.a.b	ENSGT00940000163224.b.b.f	ENSGT00390000018145.cb.b.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000153375.lb.pb.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00910000147451	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00940000153402.c.b.a.b.a.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.l.b
Black snub-nosed monkey	MODERN SPECIES	1640	TRAV3 (ENSRBIG00000030418)	TRAV2 (ENSRBIG00000029270)	OR4E1 (ENSRBIG00000029781)	ENSRBIG00000033533	OR4E2 (ENSRBIG00000036549)	ENSRBIG00000017110	TRAV1-1 (ENSRBIG00000020335)	ENSRBIG00000033577	OR10G3 (ENSRBIG00000029634)	ENSRBIG00000041530	SALL2 (ENSRBIG00000009332)	METTL3 (ENSRBIG00000031923)	ENSRBIG00000029660	ENSRBIG00000037588	ENSRBIG00000039273	RAB2B (ENSRBIG00000027517) ##22	CHD8 (ENSRBIG00000039239) ##23	SUPT16H (ENSRBIG00000038166)	RPGRIP1 (ENSRBIG00000042134)	HNRNPC (ENSRBIG00000038355)	TMEM253 (ENSRBIG00000044892)	ZNF219 (ENSRBIG00000040824)	ARHGEF40 (ENSRBIG00000027640)	NDRG2 (ENSRBIG00000038694)	RNASE8 (ENSRBIG00000034590)	TPPP2 (ENSRBIG00000032765)	SLC39A2 (ENSRBIG00000038352)	METTL17 (ENSRBIG00000031488)	RNASE3 (ENSRBIG00000010077)
Golden snub-nosed monkey	MODERN SPECIES	3029	TRAV6 (ENSRROG00000014762)	ENSRROG00000027556	TRAV3 (ENSRROG00000043216)	TRAV2 (ENSRROG00000013627)	OR4E1 (ENSRROG00000027332)	OR4E2 (ENSRROG00000027486)	ENSRROG00000009364	TRAV1-1 (ENSRROG00000025446)	OR10G2 (ENSRROG00000005233)	OR10G3 (ENSRROG00000003578)	ENSRROG00000045157	SALL2 (ENSRROG00000035352)	METTL3 (ENSRROG00000029791)	ENSRROG00000010285	ENSRROG00000038128	RAB2B (ENSRROG00000039326) ##22	CHD8 (ENSRROG00000044285) ##23	SUPT16H (ENSRROG00000040444)	RPGRIP1 (ENSRROG00000043617)	ENSRROG00000006722	TMEM253 (ENSRROG00000030331)	ZNF219 (ENSRROG00000038491)	ARHGEF40 (ENSRROG00000037763)	RNASE8 (ENSRROG00000025981)
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000018145.cb.b.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b
Vervet Monkey	MODERN SPECIES	21	TRAV10 (ENSCSAG00000016425)	TRAV9-1 (ENSCSAG00000016429)	TRAV6 (ENSCSAG00000016431)	TRAV5 (ENSCSAG00000016435)	TRAV4 (ENSCSAG00000016438)	TRAV3 (ENSCSAG00000016443)	TRAV2 (ENSCSAG00000016448)	OR4E1 (ENSCSAG00000016454)	OR4E2 (ENSCSAG00000000338)	TRAV1-2 (ENSCSAG00000016456)	OR10G2 (ENSCSAG00000000339)	OR10G3 (ENSCSAG00000000340)	SALL2 (ENSCSAG00000016461)	METTL3 (ENSCSAG00000016468)	ENSCSAG00000016473	RAB2B (ENSCSAG00000016480) ##22	CHD8 (ENSCSAG00000016489) ##23	SUPT16H (ENSCSAG00000016497)	RPGRIP1 (ENSCSAG00000016554)	HNRNPC (ENSCSAG00000016585)	TMEM253 (ENSCSAG00000016592)	ZNF219 (ENSCSAG00000016599)	ARHGEF40 (ENSCSAG00000016608)	RNASE8 (ENSCSAG00000000341)	ENSCSAG00000000342	RNASE13 (ENSCSAG00000000343)	ENSCSAG00000016615	TPPP2 (ENSCSAG00000016623)	NDRG2 (ENSCSAG00000016632)	SLC39A2 (ENSCSAG00000016640)	METTL17 (ENSCSAG00000016646)
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000018145.cb.b.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.c	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a.d	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.k
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000163906	ENSGT00940000154455.a.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.c	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a.d	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.e	ENSGT00940000164606.f	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.k
Rhesus	MODERN SPECIES	17	TRAV10 (ENSMMUG00000060390)	TRAV9-1 (ENSMMUG00000047178)	ENSMMUG00000054409	TRAV5 (ENSMMUG00000052318)	TRAV3 (ENSMMUG00000056104)	TRAV2 (ENSMMUG00000044665)	OR4E1 (ENSMMUG00000053861)	OR4E2 (ENSMMUG00000037964)	OR10G2 (ENSMMUG00000058363)	TRAV1-1 (ENSMMUG00000039792)	ENSMMUG00000050710	ENSMMUG00000052300	SALL2 (ENSMMUG00000014997)	METTL3 (ENSMMUG00000062638)	TOX4 (ENSMMUG00000015004)	RAB2B (ENSMMUG00000014992) ##22	CHD8 (ENSMMUG00000015002) ##23	SUPT16H (ENSMMUG00000015000)	ENSMMUG00000055229	RPGRIP1 (ENSMMUG00000021552)	HNRNPC (ENSMMUG00000014809)	ENSMMUG00000006463	TMEM253 (ENSMMUG00000029446)	ZNF219 (ENSMMUG00000006461)	ARHGEF40 (ENSMMUG00000006457)	RNASE7 (ENSMMUG00000063021)	TPPP2 (ENSMMUG00000020749)	NDRG2 (ENSMMUG00000020747)	SLC39A2 (ENSMMUG00000060202)	METTL17 (ENSMMUG00000003157)	ENSMMUG00000056509
Crab-eating macaque	MODERN SPECIES	17	TRAV12-1 (ENSMFAG00000049711)	TRAV10 (ENSMFAG00000018221)	TRAV9-1 (ENSMFAG00000053190)	ENSMFAG00000028841	TRAV5 (ENSMFAG00000053530)	TRAV4 (ENSMFAG00000057951)	TRAV3 (ENSMFAG00000028832)	TRAV2 (ENSMFAG00000028804)	OR4E1 (ENSMFAG00000028794)	OR4E2 (ENSMFAG00000022387)	OR10G2 (ENSMFAG00000026518)	TRAV1-1 (ENSMFAG00000026947)	SALL2 (ENSMFAG00000002687)	METTL3 (ENSMFAG00000043302)	ENSMFAG00000044922	RAB2B (ENSMFAG00000027114) ##22	CHD8 (ENSMFAG00000035402) ##23	ENSMFAG00000058859	ENSMFAG00000035729	ENSMFAG00000004014	ENSMFAG00000049971	ENSMFAG00000065750	HNRNPC (ENSMFAG00000002531)	ENSMFAG00000044725	OR5AU1 (ENSMFAG00000040284)	ENSMFAG00000056000	ENSMFAG00000012118	TMEM253 (ENSMFAG00000000773)	ARHGEF40 (ENSMFAG00000023588)	RNASE8 (ENSMFAG00000002235)	RNASE7 (ENSMFAG00000062938)
Pig-tailed macaque	MODERN SPECIES	233	TRAV12-1 (ENSMNEG00000019488)	TRAV10 (ENSMNEG00000000767)	TRAV9-1 (ENSMNEG00000016787)	ENSMNEG00000018003	TRAV3 (ENSMNEG00000014007)	TRAV2 (ENSMNEG00000009807)	OR4E1 (ENSMNEG00000001168)	OR4E2 (ENSMNEG00000038013)	TRAV1-1 (ENSMNEG00000000149)	OR10G2 (ENSMNEG00000037923)	OR10G3 (ENSMNEG00000027615)	SALL2 (ENSMNEG00000030415)	ENSMNEG00000038230	METTL3 (ENSMNEG00000040458)	ENSMNEG00000045438	RAB2B (ENSMNEG00000032275) ##22	CHD8 (ENSMNEG00000031076) ##23	SUPT16H (ENSMNEG00000042131)	ENSMNEG00000045143	ENSMNEG00000042280	ENSMNEG00000041396	ENSMNEG00000011928	TMEM253 (ENSMNEG00000040431)	ZNF219 (ENSMNEG00000034643)	ARHGEF40 (ENSMNEG00000033844)	TPPP2 (ENSMNEG00000035482)	NDRG2 (ENSMNEG00000032361)	SLC39A2 (ENSMNEG00000039264)	METTL17 (ENSMNEG00000040221)	ENSMNEG00000001455	ENSMNEG00000038266
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00390000018145.cb.b.b	ENSGT00940000153130.a.b.b	ENSGT00940000159469.a.b.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00390000003628.b.c.b.a.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606.f	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Olive baboon	MODERN SPECIES	17	ENSPANG00000033138	ENSPANG00000039148	ENSPANG00000031341	TRAV5 (ENSPANG00000042056)	TRAV4 (ENSPANG00000039983)	TRAV3 (ENSPANG00000035847)	TRAV2 (ENSPANG00000020008)	OR4E1 (ENSPANG00000029455)	OR4E2 (ENSPANG00000007302)	TRAV1-1 (ENSPANG00000033912)	ENSPANG00000048072	OR10G3 (ENSPANG00000022541)	ENSPANG00000039025	SALL2 (ENSPANG00000020006)	ENSPANG00000003914	RAB2B (ENSPANG00000021789) ##22	CHD8 (ENSPANG00000011742) ##23	ENSPANG00000020915	RPGRIP1 (ENSPANG00000021790)	HNRNPC (ENSPANG00000020782)	ENSPANG00000035759	OR5AU1 (ENSPANG00000000651)	ENSPANG00000045341	TMEM253 (ENSPANG00000000650)	ZNF219 (ENSPANG00000007539)	ARHGEF40 (ENSPANG00000000451)	RNASE7 (ENSPANG00000049890)	TPPP2 (ENSPANG00000020506)	NDRG2 (ENSPANG00000021105)	SLC39A2 (ENSPANG00000011743)	METTL17 (ENSPANG00000021109)
Cercopithecinae_d	ANCESTRAL SPECIES	60	ENSGT00940000154455.a.b	ENSGT00940000163224.b.b.f	ENSGT00390000018145.cb.b.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888.i.b	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00390000003628.b.c.b.a.a.b	ENSGT00940000153402.c.b.a.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253.l.b	ENSGT00390000004706.k
Sooty mangabey	MODERN SPECIES	215	TRAV9-1 (ENSCATG00000017009)	TRAV6 (ENSCATG00000017571)	ENSCATG00000035020	TRAV4 (ENSCATG00000016369)	ENSCATG00000016711	TRAV3 (ENSCATG00000016722)	OR4E1 (ENSCATG00000018042)	OR4E2 (ENSCATG00000017264)	TRAV1-1 (ENSCATG00000006047)	OR10G2 (ENSCATG00000006545)	OR10G3 (ENSCATG00000006818)	SALL2 (ENSCATG00000045263)	METTL3 (ENSCATG00000034766)	ENSCATG00000039357	ENSCATG00000007451	RAB2B (ENSCATG00000044849) ##22	CHD8 (ENSCATG00000004861) ##23	SUPT16H (ENSCATG00000036660)	RPGRIP1 (ENSCATG00000043832)	ENSCATG00000030828	ENSCATG00000028025	TMEM253 (ENSCATG00000030179)	ZNF219 (ENSCATG00000014440)	ARHGEF40 (ENSCATG00000033702)	TPPP2 (ENSCATG00000032548)	NDRG2 (ENSCATG00000044168)	SLC39A2 (ENSCATG00000036547)	METTL17 (ENSCATG00000040494)	RNASE3 (ENSCATG00000021993)	ENSCATG00000035792	ENSCATG00000044410
Drill	MODERN SPECIES	564	ENSMLEG00000024072	TRAV10 (ENSMLEG00000024198)	TRAV9-1 (ENSMLEG00000011970)	TRAV6 (ENSMLEG00000041661)	TRAV3 (ENSMLEG00000026640)	TRAV2 (ENSMLEG00000020305)	OR4E1 (ENSMLEG00000011315)	OR4E2 (ENSMLEG00000015373)	TRAV1-1 (ENSMLEG00000009817)	OR10G2 (ENSMLEG00000000188)	OR10G3 (ENSMLEG00000013854)	SALL2 (ENSMLEG00000036462)	ENSMLEG00000029770	METTL3 (ENSMLEG00000020583)	ENSMLEG00000034322	RAB2B (ENSMLEG00000043065) ##22	CHD8 (ENSMLEG00000035911) ##23	SUPT16H (ENSMLEG00000043612)	RPGRIP1 (ENSMLEG00000038546)	HNRNPC (ENSMLEG00000040545)	TMEM253 (ENSMLEG00000041524)	ZNF219 (ENSMLEG00000020915)	ARHGEF40 (ENSMLEG00000040819)	TPPP2 (ENSMLEG00000009810)	NDRG2 (ENSMLEG00000030692)	SLC39A2 (ENSMLEG00000031206)	METTL17 (ENSMLEG00000040753)	RNASE3 (ENSMLEG00000002481)	EDDM3B (ENSMLEG00000027313)	ENSMLEG00000037515	RNASE4 (ENSMLEG00000013377)
Laurasiatheria	DUPLICATION
Laurasiatheria	DUPLICATION
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Giant Panda	MODERN SPECIES	12	ENSAMEG00000008330	ENSAMEG00000027759	ENSAMEG00000008338	ENSAMEG00000029119	ENSAMEG00000025963	ENSAMEG00000023673	ENSAMEG00000029745	ENSAMEG00000025332	ENSAMEG00000028092	ENSAMEG00000019786	ENSAMEG00000030735	ENSAMEG00000028085 ##22	SALL2 (ENSAMEG00000006226)	METTL3 (ENSAMEG00000006229)	TOX4 (ENSAMEG00000006261)	ENSAMEG00000029396 ##22	CHD8 (ENSAMEG00000006307) ##23	SUPT16H (ENSAMEG00000006398)	ENSAMEG00000006456	ENSAMEG00000006492	OR5AU1 (ENSAMEG00000006502)	TMEM253 (ENSAMEG00000006503)	ZNF219 (ENSAMEG00000024535)	ARHGEF40 (ENSAMEG00000006526)	ENSAMEG00000020054	RNASE13 (ENSAMEG00000020056)	TPPP2 (ENSAMEG00000006545)	NDRG2 (ENSAMEG00000006557)	ENSAMEG00000006604	ENSAMEG00000006615	ENSAMEG00000020058
Ursus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
American black bear	MODERN SPECIES	7333																ENSUAMG00000014372 ##22
Canidae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Dingo	MODERN SPECIES	277	ENSCAFG00020015518	CSRP2 (ENSCAFG00020015512)	ZDHHC17 (ENSCAFG00020015453)	OSBPL8 (ENSCAFG00020015356)	BBS10 (ENSCAFG00020015335)	NAP1L1 (ENSCAFG00020015328)	ENSCAFG00020015316	ENSCAFG00020015310	ENSCAFG00020015296	KRR1 (ENSCAFG00020015286)	OR4E1 (ENSCAFG00020015285)	OR4E2 (ENSCAFG00020015283)	SALL2 (ENSCAFG00020015273)	METTL3 (ENSCAFG00020015265)	ENSCAFG00020015261	ENSCAFG00020015235 ##22	ENSCAFG00020015220 ##22	CHD8 (ENSCAFG00020014565) ##23	ENSCAFG00020014531	SUPT16H (ENSCAFG00020014529)	RPGRIP1 (ENSCAFG00020014517)	ENSCAFG00020014469	TMEM253 (ENSCAFG00020014456)	ZNF219 (ENSCAFG00020014450)	ARHGEF40 (ENSCAFG00020014442)	RNASE13 (ENSCAFG00020014438)	ENSCAFG00020014435	NDRG2 (ENSCAFG00020014429)	SLC39A2 (ENSCAFG00020014424)	METTL17 (ENSCAFG00020014416)	RNASE1 (ENSCAFG00020014411)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.a ##22
Hedgehog	MODERN SPECIES	2704																RAB2B (ENSEEUG00000010268) ##22
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.j.b ##22
Giant Panda	MODERN SPECIES	12	ENSAMEG00000026651	TRAV20 (ENSAMEG00000007052)	ENSAMEG00000031407	ENSAMEG00000008341	ENSAMEG00000008330	ENSAMEG00000027759	ENSAMEG00000008338	ENSAMEG00000029119	ENSAMEG00000025963	ENSAMEG00000023673	ENSAMEG00000029745	ENSAMEG00000025332	ENSAMEG00000028092	ENSAMEG00000019786	ENSAMEG00000030735	ENSAMEG00000028085 ##22	SALL2 (ENSAMEG00000006226)	METTL3 (ENSAMEG00000006229)	TOX4 (ENSAMEG00000006261)	ENSAMEG00000029396 ##22	CHD8 (ENSAMEG00000006307) ##23	SUPT16H (ENSAMEG00000006398)	ENSAMEG00000006456	ENSAMEG00000006492	OR5AU1 (ENSAMEG00000006502)	TMEM253 (ENSAMEG00000006503)	ZNF219 (ENSAMEG00000024535)	ARHGEF40 (ENSAMEG00000006526)	ENSAMEG00000020054	RNASE13 (ENSAMEG00000020056)	TPPP2 (ENSAMEG00000006545)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00900000140957.A.a.a	ENSGT00940000163507	ENSGT00940000153073.b.b.b.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Eulipotyphla	ANCESTRAL SPECIES	72														ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A
Common shrew	MODERN SPECIES	7315														METTL3 (ENSSARG00000005036)	TOX4 (ENSSARG00000004988)	RAB2B (ENSSARG00000004969) ##22	CHD8 (ENSSARG00000004849) ##23	SUPT16H (ENSSARG00000004774)
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000163502.a	ENSGT00940000153073.b.a	ENSGT00940000153073.b.b.b.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00900000140957.A.a.a	ENSGT00940000154455.b	ENSGT00940000159469.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Suina	ANCESTRAL SPECIES	51	ENSGT00940000153130.a.a.b	ENSGT00940000163507	ENSGT00940000159469.a.b	ENSGT00940000153073.b.b.b.a.a	ENSGT00940000163224.b.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.b.a.b	ENSGT00900000140957.A.a.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253	ENSGT00940000160869
Chacoan peccary	MODERN SPECIES	884	ENSCWAG00000004439	ENSCWAG00000004452	ENSCWAG00000004484	TRAV5 (ENSCWAG00000004515)	ENSCWAG00000004532	ENSCWAG00000004559	ENSCWAG00000004565	OR4E1 (ENSCWAG00000004585)	OR4E2 (ENSCWAG00000004598)	ENSCWAG00000004612	ENSCWAG00000004619	OR10G3 (ENSCWAG00000004626)	SALL2 (ENSCWAG00000004633)	METTL3 (ENSCWAG00000004649)	TOX4 (ENSCWAG00000004680)	RAB2B (ENSCWAG00000004715) ##22	CHD8 (ENSCWAG00000004765) ##23	SUPT16H (ENSCWAG00000005074)	RPGRIP1 (ENSCWAG00000005192)	ENSCWAG00000005813	OR5AU1 (ENSCWAG00000005895)	TMEM253 (ENSCWAG00000005904)	ZNF219 (ENSCWAG00000005938)	ARHGEF40 (ENSCWAG00000005955)	NDRG2 (ENSCWAG00000006071)	ENSCWAG00000006388	TPPP2 (ENSCWAG00000006402)	SLC39A2 (ENSCWAG00000006423)	METTL17 (ENSCWAG00000006452)	ENSCWAG00000006476	RNASE6 (ENSCWAG00000006521)
Pig	MODERN SPECIES	15	ENSSSCG00000002097	ENSSSCG00000002099	ENSSSCG00000034110	TRAV6 (ENSSSCG00000036635)	ENSSSCG00000046105	TRAV4 (ENSSSCG00000035110)	TRAV2 (ENSSSCG00000031604)	OR4E1 (ENSSSCG00000002105)	OR4E2 (ENSSSCG00000002106)	ENSSSCG00000039232	ENSSSCG00000026253	OR10G3 (ENSSSCG00000026156)	SALL2 (ENSSSCG00000022705)	METTL3 (ENSSSCG00000024445)	ENSSSCG00000029203	RAB2B (ENSSSCG00000029544) ##22	CHD8 (ENSSSCG00000002127) ##23	SUPT16H (ENSSSCG00000022900)	RPGRIP1 (ENSSSCG00000002129)	ENSSSCG00000038947	OR5AU1 (ENSSSCG00000032876)	TMEM253 (ENSSSCG00000030437)	ZNF219 (ENSSSCG00000038313)	ARHGEF40 (ENSSSCG00000023857)	ENSSSCG00000029936	TPPP2 (ENSSSCG00000021950)	NDRG2 (ENSSSCG00000030309)	SLC39A2 (ENSSSCG00000029754)	METTL17 (ENSSSCG00000021718)	ENSSSCG00000035377	ENSSSCG00000042755
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000163398	ENSGT00940000153130.a.a.b	ENSGT00940000159469.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451.b	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Camelidae	ANCESTRAL SPECIES	71	ENSGT00900000140957.A.a.a	ENSGT00940000153073.b.b.b.a.b	ENSGT00940000154455.b	ENSGT00940000153073.b.b.b.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451.b	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Arabian camel	MODERN SPECIES	32	ENSCDRG00005002939	ENSCDRG00005002933	ENSCDRG00005002928	ENSCDRG00005002920	TRAV4 (ENSCDRG00005002905)	TRAV3 (ENSCDRG00005002896)	TRAV2 (ENSCDRG00005002888)	OR4E1 (ENSCDRG00005002877)	OR4E2 (ENSCDRG00005002869)	OR10G2 (ENSCDRG00005002858)	OR10G3 (ENSCDRG00005002845)	SALL2 (ENSCDRG00005002827)	ENSCDRG00005002803	METTL3 (ENSCDRG00005002786)	TOX4 (ENSCDRG00005002769)	RAB2B (ENSCDRG00005002733) ##22	CHD8 (ENSCDRG00005002636) ##23	SUPT16H (ENSCDRG00005002606)	RPGRIP1 (ENSCDRG00005002465)	ENSCDRG00005002382	OR5AU1 (ENSCDRG00005002359)	TMEM253 (ENSCDRG00005002346)	ZNF219 (ENSCDRG00005002334)	ARHGEF40 (ENSCDRG00005002284)	ENSCDRG00005002258	TPPP2 (ENSCDRG00005002244)	NDRG2 (ENSCDRG00005001985)	SLC39A2 (ENSCDRG00005001924)	METTL17 (ENSCDRG00005001901)	ENSCDRG00005001889	ENSCDRG00005001882
Alpaca	MODERN SPECIES	3131													OR10G3 (ENSVPAG00000007365)	METTL3 (ENSVPAG00000007362)	TOX4 (ENSVPAG00000007361)	RAB2B (ENSVPAG00000007360) ##22	CHD8 (ENSVPAG00000007359) ##23	SUPT16H (ENSVPAG00000007355)	RPGRIP1 (ENSVPAG00000007342)	ENSVPAG00000007337
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000167535	ENSGT00940000163906	ENSGT00900000140957.A.a.a	ENSGT00940000154455.b	ENSGT00940000159469.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000153073.b.b.b.b.`b	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000154455.b	ENSGT00940000163052	ENSGT00940000153073.b.b.b.b.z.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00940000153402.c.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000153073.b.a	ENSGT00940000154455.b.f	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00940000153073.b.b.b.b.`b	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000154455.b.e	ENSGT00940000153073.b.b.b.b.z.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00940000153402.c.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000163224.a	ENSGT00940000160147.a	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000154455.b.f	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000163224.a	ENSGT00940000160147.a	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163398	ENSGT00940000153073.b.a.j	ENSGT00940000154455.b.f	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000164554	ENSGT01060000251758	ENSGT00900000140957.B	ENSGT00940000163224.a	ENSGT00940000160147.a	ENSGT00940000166072.a	ENSGT00940000153073.b.b.b.b.z.a	ENSGT00940000153073.a	ENSGT00940000163052	ENSGT00940000159469.a.b	ENSGT00740000116858	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Beluga whale	MODERN SPECIES	6						TRAV17 (ENSDLEG00000002863)	ENSDLEG00000002854	ENSDLEG00000002843	TRAV14DV4 (ENSDLEG00000002832)	ENSDLEG00000002822	TRAV2 (ENSDLEG00000002816)	OR4E2 (ENSDLEG00000002701)	SALL2 (ENSDLEG00000002616)	METTL3 (ENSDLEG00000002607)	TOX4 (ENSDLEG00000002565)	RAB2B (ENSDLEG00000002543) ##22	CHD8 (ENSDLEG00000002452) ##23	SUPT16H (ENSDLEG00000002334)	RPGRIP1 (ENSDLEG00000002198)	HNRNPC (ENSDLEG00000002166)	OR5AU1 (ENSDLEG00000002154)	TMEM253 (ENSDLEG00000002126)	ZNF219 (ENSDLEG00000002108)	ARHGEF40 (ENSDLEG00000002021)	ENSDLEG00000002000	ENSDLEG00000001991	RNASE13 (ENSDLEG00000001981)	TPPP2 (ENSDLEG00000001967)	NDRG2 (ENSDLEG00000001909)	SLC39A2 (ENSDLEG00000001885)	METTL17 (ENSDLEG00000001876)
Narwhal	MODERN SPECIES	308	ENSMMNG00015010481	ENSMMNG00015010465	ENSMMNG00015010449	ENSMMNG00015010435	TRDV2 (ENSMMNG00015010423)	ENSMMNG00015010411	ENSMMNG00015010405	ENSMMNG00015010393	TRAV14DV4 (ENSMMNG00015010385)	ENSMMNG00015010376	TRAV2 (ENSMMNG00015010367)	OR4E2 (ENSMMNG00015010254)	SALL2 (ENSMMNG00015010169)	METTL3 (ENSMMNG00015010155)	TOX4 (ENSMMNG00015010130)	RAB2B (ENSMMNG00015010108) ##22	CHD8 (ENSMMNG00015010038) ##23	SUPT16H (ENSMMNG00015009989)	RPGRIP1 (ENSMMNG00015009898)	ENSMMNG00015009839	TMEM253 (ENSMMNG00015009783)	ZNF219 (ENSMMNG00015009770)	ARHGEF40 (ENSMMNG00015009724)	ENSMMNG00015009701	ENSMMNG00015009695	RNASE13 (ENSMMNG00015009687)	TPPP2 (ENSMMNG00015009681)	NDRG2 (ENSMMNG00015009650)	SLC39A2 (ENSMMNG00015009636)	METTL17 (ENSMMNG00015009617)	ENSMMNG00015009606
Vaquita	MODERN SPECIES	11	OXA1L (ENSPSNG00000018044)	ABHD4 (ENSPSNG00000017542)	DAD1 (ENSPSNG00000017483)	ENSPSNG00000017223	ENSPSNG00000017099	ENSPSNG00000017063	ENSPSNG00000017047	ENSPSNG00000016997	ENSPSNG00000016967	ENSPSNG00000016934	ENSPSNG00000016908	OR4E2 (ENSPSNG00000016023)	SALL2 (ENSPSNG00000015828)	METTL3 (ENSPSNG00000015776)	TOX4 (ENSPSNG00000015667)	RAB2B (ENSPSNG00000015559) ##22	CHD8 (ENSPSNG00000015430) ##23	SUPT16H (ENSPSNG00000015312)	RPGRIP1 (ENSPSNG00000014148)	ENSPSNG00000013809	OR5AU1 (ENSPSNG00000013704)	TMEM253 (ENSPSNG00000013658)	ZNF219 (ENSPSNG00000013621)	ARHGEF40 (ENSPSNG00000013481)	TPPP2 (ENSPSNG00000013375)	NDRG2 (ENSPSNG00000013022)	SLC39A2 (ENSPSNG00000012755)	METTL17 (ENSPSNG00000012581)	RNASE1 (ENSPSNG00000012475)	ANG (ENSPSNG00000012450)	RNASE4 (ENSPSNG00000012410)
Sperm whale	MODERN SPECIES	2	ENSPCTG00005007618	ENSPCTG00005007590	ENSPCTG00005007577	ENSPCTG00005007556	ENSPCTG00005007505	TRAV10 (ENSPCTG00005007386)	ENSPCTG00005007240	ENSPCTG00005007088	TRAV3 (ENSPCTG00005006999)	TRAV2 (ENSPCTG00005006935)	OR10G3 (ENSPCTG00005006764)	ENSPCTG00005006740	SALL2 (ENSPCTG00005006728)	METTL3 (ENSPCTG00005006596)	TOX4 (ENSPCTG00005006567)	RAB2B (ENSPCTG00005006545) ##22	CHD8 (ENSPCTG00005005653) ##23	SUPT16H (ENSPCTG00005005521)	RPGRIP1 (ENSPCTG00005004351)	HNRNPC (ENSPCTG00005004087)	TMEM253 (ENSPCTG00005003727)	ZNF219 (ENSPCTG00005003709)	ARHGEF40 (ENSPCTG00005003451)	METTL17 (ENSPCTG00005003410)	SLC39A2 (ENSPCTG00005003259)	RNASE2 (ENSPCTG00005003183)	RNASE1 (ENSPCTG00005003094)	RNASE6 (ENSPCTG00005003057)	RNASE4 (ENSPCTG00005002906)	ANG (ENSPCTG00005002839)	ENSPCTG00005002653
Blue whale	MODERN SPECIES	11	ENSBMSG00010009903	TRAV17 (ENSBMSG00010009898)	ENSBMSG00010009887	ENSBMSG00010009878	ENSBMSG00010009869	ENSBMSG00010009852	TRAV10 (ENSBMSG00010009843)	ENSBMSG00010009837	TRAV14DV4 (ENSBMSG00010009827)	ENSBMSG00010009821	TRAV4 (ENSBMSG00010009809)	OR4E2 (ENSBMSG00010009792)	SALL2 (ENSBMSG00010009782)	METTL3 (ENSBMSG00010009722)	TOX4 (ENSBMSG00010009693)	RAB2B (ENSBMSG00010009679) ##22	CHD8 (ENSBMSG00010009626) ##23	SUPT16H (ENSBMSG00010009596)	RPGRIP1 (ENSBMSG00010009412)	ENSBMSG00010009357	TMEM253 (ENSBMSG00010009330)	ZNF219 (ENSBMSG00010009292)	ARHGEF40 (ENSBMSG00010009274)	ENSBMSG00010009248	TPPP2 (ENSBMSG00010009241)	NDRG2 (ENSBMSG00010009069)	SLC39A2 (ENSBMSG00010008989)	METTL17 (ENSBMSG00010008975)	ENSBMSG00010008961	RNASE1 (ENSBMSG00010008955)	RNASE6 (ENSBMSG00010008950)
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.k.a ##22
Yarkand deer	MODERN SPECIES	1293																ENSCHYG00000018600 ##22
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	6	ENSGT00390000001141	ENSGT00940000162546	ENSGT00940000160062	ENSGT00940000160783	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B.m	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000163708.d	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Percora_a	ANCESTRAL SPECIES	8	ENSGT00390000001141	ENSGT00940000162546	ENSGT00940000160062	ENSGT00940000160783	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B.m	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000163708.d	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000153073.a.k.b.b	ENSGT00940000163502.a	ENSGT00940000153073.a.l	ENSGT00940000163398	ENSGT00940000153073.b.a	ENSGT00940000163507.i.b	ENSGT00940000153073.b.b.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT00940000153402.d.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Caprinae	ANCESTRAL SPECIES	11		ENSGT00940000159469.a.b.c.a	ENSGT00940000162998.b	ENSGT00940000153073.b.a	ENSGT00940000163507.i.b	ENSGT00940000153073.b.b.a	ENSGT00970000193782	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.ab	ENSGT01050000244869.a.b.a.`b	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Goat	MODERN SPECIES	1	ENSCHIG00000025281	ENSCHIG00000025195	ENSCHIG00000012749	TRAV16 (ENSCHIG00000019245)	ENSCHIG00000008076	TRAV3 (ENSCHIG00000017571)	ENSCHIG00000006512	OR4E1 (ENSCHIG00000007415)	OR4E2 (ENSCHIG00000003860)	ENSCHIG00000004866	ENSCHIG00000008541	OR10G3 (ENSCHIG00000002114)	SALL2 (ENSCHIG00000025803)	METTL3 (ENSCHIG00000016723)	TOX4 (ENSCHIG00000003080)	ENSCHIG00000017531 ##22	CHD8 (ENSCHIG00000026157) ##23	SUPT16H (ENSCHIG00000011840)	RPGRIP1 (ENSCHIG00000026244)	ENSCHIG00000022536	OR5AU1 (ENSCHIG00000022456)	TMEM253 (ENSCHIG00000020289)	ZNF219 (ENSCHIG00000016397)	ARHGEF40 (ENSCHIG00000026076)	ENSCHIG00000005819	RNASE13 (ENSCHIG00000006567)	TPPP2 (ENSCHIG00000002315)	NDRG2 (ENSCHIG00000012099)	SLC39A2 (ENSCHIG00000015743)	METTL17 (ENSCHIG00000010994)	ENSCHIG00000006998
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020010118	ENSOARG00020010089	ENSOARG00020010064	ENSOARG00020010047	PGBD2 (ENSOARG00020010001)	ZNF692 (ENSOARG00020009858)	ZNF672 (ENSOARG00020009841)	SH3BP5L (ENSOARG00020009825)	LYPD8 (ENSOARG00020018312)	OR10G2 (ENSOARG00020018290)	ENSOARG00020018266	OR10G3 (ENSOARG00020018252)	SALL2 (ENSOARG00020018216)	METTL3 (ENSOARG00020018172)	TOX4 (ENSOARG00020018103)	ENSOARG00020018049 ##22	CHD8 (ENSOARG00020017233) ##23	SUPT16H (ENSOARG00020016964)	RPGRIP1 (ENSOARG00020016061)	ENSOARG00020015772	OR5AU1 (ENSOARG00020015729)	TMEM253 (ENSOARG00020015649)	ZNF219 (ENSOARG00020015592)	ARHGEF40 (ENSOARG00020015406)	ENSOARG00020015325	TPPP2 (ENSOARG00020015259)	NDRG2 (ENSOARG00020014175)	SLC39A2 (ENSOARG00020014072)	METTL17 (ENSOARG00020013829)	RNASE2 (ENSOARG00020013798)	ENSOARG00020013749
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000163052	ENSGT00940000153073.a.k.b.a.a	ENSGT00940000153073.b.b.a.d.b	ENSGT00970000193782	ENSGT00940000153073.b.b.a.d.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.z	ENSGT01050000244869.a.b.b	ENSGT00950000185755	ENSGT00390000014814.a.b.a.b.b.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695.e	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Bos	ANCESTRAL SPECIES	40	ENSGT00940000153073.a.k.b.a.a.a.a	ENSGT00940000153073.b.b.a.d.b	ENSGT00970000193782.a.b.b	ENSGT00940000153073.b.b.a.d.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.z	ENSGT01050000244869.a.b.a.y	ENSGT01050000244869.a.b.b	ENSGT00950000185755	ENSGT00390000014814.a.b.a.b.b.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695.e	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Bos_a	ANCESTRAL SPECIES	96									ENSGT00940000163275	ENSGT01050000244869.a.b.a.z	ENSGT01050000244869.a.b.b	ENSGT00390000014814.a.b.a.b.b.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000157645.b.o.b	ENSGT00940000160869.a.b	ENSGT00940000160869.b
Wild yak	MODERN SPECIES	1191	GADD45GIP1 (ENSBMUG00000015011)	NFIX (ENSBMUG00000015081)	LYL1 (ENSBMUG00000015125)	TRMT1 (ENSBMUG00000015157)	NACC1 (ENSBMUG00000015196)	STX10 (ENSBMUG00000015238)	IER2 (ENSBMUG00000015268)	CACNA1A (ENSBMUG00000017000)	OR4E2 (ENSBMUG00000017584)	OR10G2 (ENSBMUG00000017604)	OR10G3 (ENSBMUG00000017624)	ENSBMUG00000017637	SALL2 (ENSBMUG00000017662)	METTL3 (ENSBMUG00000017682)	TOX4 (ENSBMUG00000017709)	RAB2B (ENSBMUG00000017773) ##22	CHD8 (ENSBMUG00000018147) ##23	SUPT16H (ENSBMUG00000018487)	RPGRIP1 (ENSBMUG00000018569)	ENSBMUG00000018692	TMEM253 (ENSBMUG00000018774)	ZNF219 (ENSBMUG00000018789)	ARHGEF40 (ENSBMUG00000018833)	NDRG2 (ENSBMUG00000019013)	ENSBMUG00000019083	TPPP2 (ENSBMUG00000019187)	SLC39A2 (ENSBMUG00000019243)	METTL17 (ENSBMUG00000019263)	ENSBMUG00000019284	ENSBMUG00000019302	ENSBMUG00000019316
Bos_b	ANCESTRAL SPECIES	11		ENSGT00940000153073.b.b.a.d.b	ENSGT00970000193782.a.b.b	ENSGT00940000153073.b.b.a.d.a.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000160183.d.b	ENSGT01050000244869.a.b.a.z	ENSGT01050000244869.a.b.a.y	ENSGT01050000244869.a.b.b	ENSGT00950000185755	ENSGT00390000014814.a.b.a.b.b.d.b.a	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k.b.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d.a.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695.e	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Cow	MODERN SPECIES	1	ENSBTAG00000049160	ENSBTAG00000006514	ENSBTAG00000052597	ENSBTAG00000052108	ENSBTAG00000049996	OR4E1 (ENSBTAG00000011925)	OR4E2 (ENSBTAG00000007029)	OR10G1 (ENSBTAG00000055178)	OR10G1C (ENSBTAG00000055093)	OR10G3 (ENSBTAG00000024752)	ENSBTAG00000055080	ENSBTAG00000049161	SALL2 (ENSBTAG00000013249)	METTL3 (ENSBTAG00000015148)	TOX4 (ENSBTAG00000015146)	RAB2B (ENSBTAG00000044207) ##22	CHD8 (ENSBTAG00000020422) ##23	SUPT16H (ENSBTAG00000020421)	RPGRIP1 (ENSBTAG00000004694)	HNRNPC (ENSBTAG00000011396)	OR5AU1 (ENSBTAG00000018919)	TMEM253 (ENSBTAG00000032908)	ZNF219 (ENSBTAG00000021008)	ARHGEF40 (ENSBTAG00000013401)	ENSBTAG00000046482	RNASE13 (ENSBTAG00000046189)	TPPP2 (ENSBTAG00000000328)	NDRG2 (ENSBTAG00000000843)	SLC39A2 (ENSBTAG00000000936)	METTL17 (ENSBTAG00000006613)	RNASE2 (ENSBTAG00000025664)
Hybrid Bos Indicus	MODERN SPECIES	1	ENSBIXG00005021902	ENSBIXG00005021897	ENSBIXG00005021893	ENSBIXG00005021879	ENSBIXG00005007842	OR4E1 (ENSBIXG00005021874)	OR4E2 (ENSBIXG00005021868)	ENSBIXG00005003681	ENSBIXG00005003680	ENSBIXG00005021851	OR10G3 (ENSBIXG00005021828)	ENSBIXG00005021809	SALL2 (ENSBIXG00005003668)	TOX4 (ENSBIXG00005021649)	ENSBIXG00005021583	ENSBIXG00005021575 ##22	CHD8 (ENSBIXG00005021510) ##23	SUPT16H (ENSBIXG00005003604)	RPGRIP1 (ENSBIXG00005021315)	ENSBIXG00005020951	OR5AU1 (ENSBIXG00005020678)	ZNF219 (ENSBIXG00005003492)	TMEM253 (ENSBIXG00005020594)	ARHGEF40 (ENSBIXG00005007155)	NDRG2 (ENSBIXG00005020459)	ENSBIXG00005020029	TPPP2 (ENSBIXG00005003273)	SLC39A2 (ENSBIXG00005019986)	METTL17 (ENSBIXG00005019964)	ENSBIXG00005019915	ENSBIXG00005019903
American bison	MODERN SPECIES	3151				ENSBBBG00000014499	ENSBBBG00000007032	ENSBBBG00000014491	OR4E1 (ENSBBBG00000003366)	OR4E2 (ENSBBBG00000003363)	ENSBBBG00000003359	ENSBBBG00000014483	OR10G3 (ENSBBBG00000014477)	ENSBBBG00000014472	SALL2 (ENSBBBG00000003348)	METTL3 (ENSBBBG00000002881)	TOX4 (ENSBBBG00000003340)	ENSBBBG00000003331 ##22	CHD8 (ENSBBBG00000003314) ##23	SUPT16H (ENSBBBG00000014234)	RPGRIP1 (ENSBBBG00000014207)	ENSBBBG00000009112	OR5AU1 (ENSBBBG00000014074)
Siberian musk deer	MODERN SPECIES	71	ENSMMSG00000006630	TRAV16 (ENSMMSG00000006642)	ENSMMSG00000006656	ENSMMSG00000006683	ENSMMSG00000006696	ENSMMSG00000006708	ENSMMSG00000006724	ENSMMSG00000006746	TRAV4 (ENSMMSG00000006764)	ENSMMSG00000006793	OR4E1 (ENSMMSG00000006816)	OR10G3 (ENSMMSG00000006839)	SALL2 (ENSMMSG00000006858)	METTL3 (ENSMMSG00000006893)	TOX4 (ENSMMSG00000006934)	RAB2B (ENSMMSG00000006972) ##22	CHD8 (ENSMMSG00000007057) ##23	SUPT16H (ENSMMSG00000007478)	ENSMMSG00000007534	ENSMMSG00000007603	OR5AU1 (ENSMMSG00000007669)	TMEM253 (ENSMMSG00000007685)	ZNF219 (ENSMMSG00000007720)	ARHGEF40 (ENSMMSG00000007751)	NDRG2 (ENSMMSG00000007898)	ENSMMSG00000008351	ENSMMSG00000008399	TPPP2 (ENSMMSG00000008420)	SLC39A2 (ENSMMSG00000008446)	METTL17 (ENSMMSG00000008463)	ENSMMSG00000008547
Yarkand deer	MODERN SPECIES	3	ABHD4 (ENSCHYG00000019707)	ENSCHYG00000019819	ENSCHYG00000019884	TRDV3 (ENSCHYG00000020003)	ENSCHYG00000009457	TRDV2 (ENSCHYG00000009486)	ENSCHYG00000009499	OR4E1 (ENSCHYG00000009527)	OR4E2 (ENSCHYG00000009552)	ENSCHYG00000009578	OR10G3 (ENSCHYG00000009604)	ENSCHYG00000009619	SALL2 (ENSCHYG00000009676)	METTL3 (ENSCHYG00000009777)	TOX4 (ENSCHYG00000009949)	ENSCHYG00000010144 ##22	CHD8 (ENSCHYG00000010268) ##23	ENSCHYG00000010423	ENSCHYG00000010482	RPGRIP1 (ENSCHYG00000010769)	ENSCHYG00000012113	ENSCHYG00000012216	OR5AU1 (ENSCHYG00000012244)	ZNF219 (ENSCHYG00000012271)	TMEM253 (ENSCHYG00000012373)	ARHGEF40 (ENSCHYG00000012433)	NDRG2 (ENSCHYG00000012844)	ENSCHYG00000013436	ENSCHYG00000013460	TPPP2 (ENSCHYG00000013488)	SLC39A2 (ENSCHYG00000013602)
Pecora	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.k.b.b ##22
Percora_a	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.k.b.b ##22
Bovidae	ANCESTRAL SPECIES	19	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a	ENSGT00940000159731	ENSGT01020000230354.A.a	ENSGT00940000153886.a.a.k.b.b ##22	ENSGT00940000156326	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065	ENSGT00940000160975	ENSGT00950000183062.a.a.a	ENSGT00940000165570	ENSGT00940000160282	ENSGT00940000160080	ENSGT00940000160606
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000153629.a.a	ENSGT00940000156409	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a	ENSGT00940000159731	ENSGT01020000230354.A.a	ENSGT00940000153886.a.a.k.b.b ##22	ENSGT00940000156326	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065	ENSGT00940000160975	ENSGT00950000183062.a.a.a	ENSGT00940000165570	ENSGT00940000160282	ENSGT00940000160080	ENSGT00940000160606
Goat	MODERN SPECIES	14	MAGI1 (ENSCHIG00000012723)	ENSCHIG00000008422	ENSCHIG00000012793	ENSCHIG00000002544	LRIG1 (ENSCHIG00000012710)	KBTBD8 (ENSCHIG00000014682)	ENSCHIG00000023345	SUCLG2 (ENSCHIG00000019725)	TAFA4 (ENSCHIG00000013665)	EOGT (ENSCHIG00000014149)	TMF1 (ENSCHIG00000012583)	UBA3 (ENSCHIG00000015026)	ARL6IP5 (ENSCHIG00000021517)	LMOD3 (ENSCHIG00000017627)	FRMD4B (ENSCHIG00000015488)	ENSCHIG00000014889 ##22	MITF (ENSCHIG00000022111)	MDFIC2 (ENSCHIG00000017880)	FOXP1 (ENSCHIG00000017707)	EIF4E3 (ENSCHIG00000024333)	GPR27 (ENSCHIG00000006038)	PROK2 (ENSCHIG00000020872)	ENSCHIG00000012364	RYBP (ENSCHIG00000026041)	SHQ1 (ENSCHIG00000012271)	GXYLT2 (ENSCHIG00000011713)	PPP4R2 (ENSCHIG00000006838)	PDZRN3 (ENSCHIG00000018984)	ENSCHIG00000022511	CNTN3 (ENSCHIG00000015485)	CHL1 (ENSCHIG00000015409)
Rambouillet Sheep	MODERN SPECIES	10	PSMD6 (ENSOARG00020024605)	PRICKLE2 (ENSOARG00020024549)	ADAMTS9 (ENSOARG00020024236)	MAGI1 (ENSOARG00020023373)	SLC25A26 (ENSOARG00020023224)	LRIG1 (ENSOARG00020023098)	KBTBD8 (ENSOARG00020023050)	ENSOARG00020023030	SUCLG2 (ENSOARG00020022864)	TAFA1 (ENSOARG00020022813)	EOGT (ENSOARG00020022578)	TMF1 (ENSOARG00020022407)	UBA3 (ENSOARG00020021782)	ARL6IP5 (ENSOARG00020021679)	LMOD3 (ENSOARG00020021653)	ENSOARG00020021609 ##22	FRMD4B (ENSOARG00020021286)	MITF (ENSOARG00020020821)	MDFIC2 (ENSOARG00020020710)	FOXP1 (ENSOARG00020017991)	GPR27 (ENSOARG00020017874)	PROK2 (ENSOARG00020017771)	RYBP (ENSOARG00020017720)	SHQ1 (ENSOARG00020017477)	GXYLT2 (ENSOARG00020017381)	PPP4R2 (ENSOARG00020017177)	PDZRN3 (ENSOARG00020016919)	CNTN3 (ENSOARG00020016622)	CHL1 (ENSOARG00020015831)	CNTN6 (ENSOARG00020015543)	ENSOARG00020015490
Bovinae	ANCESTRAL SPECIES	16	ENSGT00940000156409	ENSGT00390000006192.nb	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT00390000008631.a	ENSGT00940000159731	ENSGT01020000230354.A.a	ENSGT00940000153886.a.a.k.b.b ##22	ENSGT00940000156326	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065	ENSGT00940000160975	ENSGT00950000183062.a.a.a	ENSGT00940000160282	ENSGT00940000160080	ENSGT00940000160606	ENSGT00940000155198.C
Bos	ANCESTRAL SPECIES	16	ENSGT00390000006192.nb	ENSGT00940000155820	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00390000008631.a	ENSGT00940000159731	ENSGT01020000230354.A.a	ENSGT00940000153886.a.a.k.b.b ##22	ENSGT00940000156326	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026.b	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065	ENSGT00940000160975	ENSGT00950000183062.a.a.a	ENSGT00940000160282	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b
Bos_b	ANCESTRAL SPECIES	17	ENSGT00940000155820	ENSGT00940000160625.k.a.b	ENSGT00550000074950	ENSGT00940000158502	ENSGT00940000158653	ENSGT00390000010170.a.a	ENSGT00940000162607	ENSGT00940000159882	ENSGT00940000156493	ENSGT00390000010697	ENSGT00550000074831	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.a.a.a	ENSGT00390000008631.a	ENSGT00940000159731	ENSGT01020000230354.A.a	ENSGT00940000153886.a.a.k.b.b ##22	ENSGT00940000156326	ENSGT00390000004856.w.a.a.b.b.a.a	ENSGT00730000111641	ENSGT00940000159892	ENSGT00940000155865	ENSGT00890000139436.A.a	ENSGT00940000162026.b	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.b.a.a.b	ENSGT00390000013995.b.a	ENSGT00390000007605	ENSGT00940000158065	ENSGT00940000160975	ENSGT00950000183062.a.a.a	ENSGT00940000160282	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.b.b
Cow	MODERN SPECIES	14	ENSBTAG00000051801	SLC25A26 (ENSBTAG00000037972)	ENSBTAG00000051201	LRIG1 (ENSBTAG00000010360)	KBTBD8 (ENSBTAG00000011081)	SUCLG2 (ENSBTAG00000009541)	ENSBTAG00000048492	TAFA1 (ENSBTAG00000019041)	ENSBTAG00000049502	TAFA4 (ENSBTAG00000003110)	EOGT (ENSBTAG00000022681)	TMF1 (ENSBTAG00000015554)	UBA3 (ENSBTAG00000015556)	ARL6IP5 (ENSBTAG00000021506)	LMOD3 (ENSBTAG00000021508)	ENSBTAG00000013059 ##22	FRMD4B (ENSBTAG00000007624)	MITF (ENSBTAG00000006679)	ENSBTAG00000009220	MDFIC2 (ENSBTAG00000048900)	FOXP1 (ENSBTAG00000016533)	EIF4E3 (ENSBTAG00000018862)	GPR27 (ENSBTAG00000053030)	PROK2 (ENSBTAG00000019330)	ENSBTAG00000054670	RYBP (ENSBTAG00000022689)	SHQ1 (ENSBTAG00000005436)	GXYLT2 (ENSBTAG00000020481)	PPP4R2 (ENSBTAG00000002147)	PDZRN3 (ENSBTAG00000018644)	CNTN3 (ENSBTAG00000007615)
Hybrid Bos Indicus	MODERN SPECIES	14	SLC25A26 (ENSBIXG00005031207)	LRIG1 (ENSBIXG00005031216)	KBTBD8 (ENSBIXG00005031227)	SUCLG2 (ENSBIXG00005031233)	ENSBIXG00005031245	TAFA1 (ENSBIXG00005031253)	TAFA4 (ENSBIXG00005031260)	EOGT (ENSBIXG00005031262)	TMF1 (ENSBIXG00005031267)	UBA3 (ENSBIXG00005031275)	ENSBIXG00005031278	ARL6IP5 (ENSBIXG00005031280)	LMOD3 (ENSBIXG00005031283)	FRMD4B (ENSBIXG00005031293)	ENSBIXG00005031301	ENSBIXG00005031303 ##22	MITF (ENSBIXG00005031308)	ENSBIXG00005031312	MDFIC2 (ENSBIXG00005031313)	FOXP1 (ENSBIXG00005031327)	EIF4E3 (ENSBIXG00005031340)	GPR27 (ENSBIXG00005031343)	ENSBIXG00005031346	RYBP (ENSBIXG00005031352)	SHQ1 (ENSBIXG00005031362)	ENSBIXG00005031363	GXYLT2 (ENSBIXG00005031365)	PPP4R2 (ENSBIXG00005031369)	PDZRN3 (ENSBIXG00005031380)	CNTN3 (ENSBIXG00005031394)	ENSBIXG00005031401
American bison	MODERN SPECIES	3333										EOGT (ENSBBBG00000025364)	TMF1 (ENSBBBG00000008082)	UBA3 (ENSBBBG00000007824)	ENSBBBG00000000181	LMOD3 (ENSBBBG00000000194)	FRMD4B (ENSBBBG00000006453)	ENSBBBG00000006419 ##22	MITF (ENSBBBG00000009019)	MDFIC2 (ENSBBBG00000006278)	FOXP1 (ENSBBBG00000023930)	EIF4E3 (ENSBBBG00000023020)	PROK2 (ENSBBBG00000022995)	RYBP (ENSBBBG00000006031)	SHQ1 (ENSBBBG00000006026)	GXYLT2 (ENSBBBG00000022931)	PPP4R2 (ENSBBBG00000008134)	PDZRN3 (ENSBBBG00000022898)	CNTN3 (ENSBBBG00000022837)	CHL1 (ENSBBBG00000022795)	CNTN6 (ENSBBBG00000022607)	CNTN4 (ENSBBBG00000022563)	IL5RA (ENSBBBG00000008533)
Yarkand deer	MODERN SPECIES	16	MAGI1 (ENSCHYG00000018496)	ENSCHYG00000021268	SLC25A26 (ENSCHYG00000021357)	LRIG1 (ENSCHYG00000021539)	KBTBD8 (ENSCHYG00000022084)	SUCLG2 (ENSCHYG00000022142)	TAFA1 (ENSCHYG00000022393)	TAFA4 (ENSCHYG00000022432)	EOGT (ENSCHYG00000022524)	TMF1 (ENSCHYG00000022757)	UBA3 (ENSCHYG00000023036)	ARL6IP5 (ENSCHYG00000023632)	LMOD3 (ENSCHYG00000023655)	FRMD4B (ENSCHYG00000023741)	ENSCHYG00000024354	ENSCHYG00000024373 ##22	MITF (ENSCHYG00000024471)	MDFIC2 (ENSCHYG00000024686)	ENSCHYG00000024728	FOXP1 (ENSCHYG00000024873)	EIF4E3 (ENSCHYG00000026240)	PROK2 (ENSCHYG00000026260)	RYBP (ENSCHYG00000026283)	SHQ1 (ENSCHYG00000026306)	GXYLT2 (ENSCHYG00000026357)	PPP4R2 (ENSCHYG00000026369)	PDZRN3 (ENSCHYG00000026403)	CNTN3 (ENSCHYG00000026470)	CHL1 (ENSCHYG00000026559)	ENSCHYG00000026610	CNTN6 (ENSCHYG00000026622)
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT01090000260011.B	ENSGT00910000148211	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000170768	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000154455.b	ENSGT00940000163052	ENSGT00940000159469.a.a	ENSGT00940000153073.b.b.b.a.b	ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Equus	ANCESTRAL SPECIES	4	ENSGT00900000140957.A.a.a.t	ENSGT00940000154455.b.m.a.a	ENSGT00900000140957.A.a.a.s.a.a.b.a	ENSGT00940000153073.b.b.b.a.b.a.a.b	ENSGT00940000153073.b.b.b.b.s.b	ENSGT00940000162998.b.c	ENSGT00940000153073.b.b.a.g	ENSGT00740000116858.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.nb	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Horse	MODERN SPECIES		ENSECAG00000033765	ENSECAG00000033981	ENSECAG00000006005	ENSECAG00000000602	ENSECAG00000054247	ENSECAG00000031454	ENSECAG00000038214	ENSECAG00000034164	OR4E1 (ENSECAG00000003531)	OR4E2 (ENSECAG00000002752)	OR10G3 (ENSECAG00000002552)	RPS29 (ENSECAG00000011782)	SALL2 (ENSECAG00000024449)	METTL3 (ENSECAG00000013168)	TOX4 (ENSECAG00000006400)	RAB2B (ENSECAG00000006219) ##22	CHD8 (ENSECAG00000016102) ##23	SUPT16H (ENSECAG00000021686)	RPGRIP1 (ENSECAG00000013157)	ENSECAG00000017645	OR5AU1 (ENSECAG00000044657)	TMEM253 (ENSECAG00000016663)	ZNF219 (ENSECAG00000013524)	ARHGEF40 (ENSECAG00000021434)	RAE1 (ENSECAG00000051149)	RNASE13 (ENSECAG00000031881)	TPPP2 (ENSECAG00000053851)	NDRG2 (ENSECAG00000022950)	SLC39A2 (ENSECAG00000021578)	METTL17 (ENSECAG00000013518)	ENSECAG00000002332
Donkey	MODERN SPECIES	11	ENSEASG00005011619	ENSEASG00005011576	ENSEASG00005011597	ENSEASG00005011574	ENSEASG00005024725	OR4E1 (ENSEASG00005011570)	OR4E2 (ENSEASG00005011568)	ENSEASG00005037129	ENSEASG00005025107	OR10G3 (ENSEASG00005011561)	ENSEASG00005000108	SALL2 (ENSEASG00005011556)	ENSEASG00005011554	METTL3 (ENSEASG00005011501)	TOX4 (ENSEASG00005011489)	RAB2B (ENSEASG00005011485) ##22	CHD8 (ENSEASG00005010882) ##23	SUPT16H (ENSEASG00005010478)	RPGRIP1 (ENSEASG00005010414)	ENSEASG00005010413	OR5AU1 (ENSEASG00005010412)	TMEM253 (ENSEASG00005010410)	ZNF219 (ENSEASG00005010408)	ARHGEF40 (ENSEASG00005010396)	ENSEASG00005033078	ENSEASG00005034871	RNASE13 (ENSEASG00005029388)	TPPP2 (ENSEASG00005010374)	NDRG2 (ENSEASG00005010357)	ENSEASG00005010346	METTL17 (ENSEASG00005010223)
Chiroptera	ANCESTRAL SPECIES	17					ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Megabat	MODERN SPECIES	3581												ENSPVAG00000000278	SALL2 (ENSPVAG00000000277)	METTL3 (ENSPVAG00000000276)	TOX4 (ENSPVAG00000000274)	RAB2B (ENSPVAG00000000273) ##22	CHD8 (ENSPVAG00000000272) ##23	SUPT16H (ENSPVAG00000000271)	RPGRIP1 (ENSPVAG00000000268)
Microchiroptera	ANCESTRAL SPECIES	20					ENSGT00940000162998.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00910000147451	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a.b	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010019774	ENSRFEG00010019763	ENSRFEG00010019747	ENSRFEG00010019731	ENSRFEG00010019721	ENSRFEG00010019705	OR4E1 (ENSRFEG00010019693)	OR4E2 (ENSRFEG00010019673)	ENSRFEG00010019661	ENSRFEG00010019648	OR10G3 (ENSRFEG00010019639)	SALL2 (ENSRFEG00010019611)	ENSRFEG00010019590	METTL3 (ENSRFEG00010019571)	TOX4 (ENSRFEG00010019535)	RAB2B (ENSRFEG00010019483) ##22	CHD8 (ENSRFEG00010019223) ##23	SUPT16H (ENSRFEG00010019176)	RPGRIP1 (ENSRFEG00010018569)	ENSRFEG00010018084	OR5AU1 (ENSRFEG00010018056)	TMEM253 (ENSRFEG00010018031)	ZNF219 (ENSRFEG00010017997)	ARHGEF40 (ENSRFEG00010017956)	ENSRFEG00010017939	TPPP2 (ENSRFEG00010017897)	NDRG2 (ENSRFEG00010017579)	ENSRFEG00010017479	METTL17 (ENSRFEG00010017278)	ENSRFEG00010017193	RNASE1 (ENSRFEG00010017147)
Microbat	MODERN SPECIES	975		ENSMLUG00000026522	ENSMLUG00000025849	ENSMLUG00000029491	ENSMLUG00000025592	ENSMLUG00000016133	ENSMLUG00000022268	ENSMLUG00000022725	OR4E2 (ENSMLUG00000027871)	ENSMLUG00000004512	ENSMLUG00000022986	OR10G3 (ENSMLUG00000023242)	SALL2 (ENSMLUG00000009185)	METTL3 (ENSMLUG00000001919)	TOX4 (ENSMLUG00000001907)	RAB2B (ENSMLUG00000001902) ##22	CHD8 (ENSMLUG00000001878) ##23	SUPT16H (ENSMLUG00000007905)	RPGRIP1 (ENSMLUG00000007872)	ENSMLUG00000007853	ENSMLUG00000014601	RNASE13 (ENSMLUG00000014600)	TPPP2 (ENSMLUG00000024693)	NDRG2 (ENSMLUG00000014594)	ENSMLUG00000023081	METTL17 (ENSMLUG00000014583)	ENSMLUG00000013479	ENSMLUG00000023348	ENSMLUG00000030554	ENSMLUG00000005517	ENSMLUG00000014174
Carnivora	ANCESTRAL SPECIES		ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000154455.b	ENSGT00940000159469.a.b	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.a	ENSGT00940000153073.b.b.b.b.p	ENSGT00940000153073.b.b.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000163507	ENSGT00940000154455.b.k.a	ENSGT00940000159469.a.b	ENSGT00900000140957.A.a.a.v.b	ENSGT00940000154455.b.l.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.b.b.p.b	ENSGT00940000153073.b.b.a	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00940000161733
Panthera	ANCESTRAL SPECIES	3	ENSGT00940000163507	ENSGT00940000154455.b.k.a	ENSGT00940000159469.a.b	ENSGT00900000140957.A.a.a.v.b	ENSGT00940000154455.b.l.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.b.b.p.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.hb	ENSGT01050000244869.a.b.a.ib	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00940000161733
Tiger	MODERN SPECIES	354	TRAV20 (ENSPTIG00000004399)	ENSPTIG00000005889	ENSPTIG00000006843	ENSPTIG00000007598	ENSPTIG00000007714	ENSPTIG00000008223	ENSPTIG00000009552	ENSPTIG00000010381	OR4E1 (ENSPTIG00000001792)	ENSPTIG00000001881	ENSPTIG00000001894	OR10G3 (ENSPTIG00000001929)	SALL2 (ENSPTIG00000018399)	METTL3 (ENSPTIG00000020811)	TOX4 (ENSPTIG00000021608)	RAB2B (ENSPTIG00000021935) ##22	CHD8 (ENSPTIG00000021989) ##23	SUPT16H (ENSPTIG00000010252)	RPGRIP1 (ENSPTIG00000011333)	ENSPTIG00000021061	TMEM253 (ENSPTIG00000009149)	ENSPTIG00000010609	ARHGEF40 (ENSPTIG00000011756)	NDRG2 (ENSPTIG00000014026)	TPPP2 (ENSPTIG00000005295)	SLC39A2 (ENSPTIG00000006780)	METTL17 (ENSPTIG00000007288)	RNASE6 (ENSPTIG00000004112)	ENSPTIG00000004120	RNASE4 (ENSPTIG00000004123)	ANG (ENSPTIG00000004149)
Panthera_a	ANCESTRAL SPECIES	15	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a.a	ENSGT00940000159469.a.b.h	ENSGT00900000140957.A.a.a.v.b.b	ENSGT00940000154455.b.l.a	ENSGT00940000162998.b	ENSGT00940000153073.b.b.b.b.p.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a.hb	ENSGT01050000244869.a.b.a.ib	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00940000161733
leopard	MODERN SPECIES	132	ENSPPRG00000004480	ENSPPRG00000004567	ENSPPRG00000004581	ENSPPRG00000004659	ENSPPRG00000004696	ENSPPRG00000004741	OR4E1 (ENSPPRG00000019737)	OR4E2 (ENSPPRG00000019746)	ENSPPRG00000019763	ENSPPRG00000019778	OR10G3 (ENSPPRG00000019796)	SALL2 (ENSPPRG00000005572)	ENSPPRG00000005685	METTL3 (ENSPPRG00000005752)	TOX4 (ENSPPRG00000005798)	RAB2B (ENSPPRG00000005831) ##22	CHD8 (ENSPPRG00000006591) ##23	SUPT16H (ENSPPRG00000006651)	RPGRIP1 (ENSPPRG00000007747)	ENSPPRG00000008763	TMEM253 (ENSPPRG00000008849)	ZNF219 (ENSPPRG00000008860)	ARHGEF40 (ENSPPRG00000009061)	TPPP2 (ENSPPRG00000009144)	NDRG2 (ENSPPRG00000010451)	SLC39A2 (ENSPPRG00000010655)	METTL17 (ENSPPRG00000010711)	RNASE6 (ENSPPRG00000020014)	ENSPPRG00000020024	RNASE4 (ENSPPRG00000020045)	ANG (ENSPPRG00000020077)
lion	MODERN SPECIES	6	ENSPLOG00000010077	TRAV9-1 (ENSPLOG00000010062)	ENSPLOG00000010036	ENSPLOG00000010016	ENSPLOG00000009999	TRAV4 (ENSPLOG00000009991)	ENSPLOG00000009976	OR4E1 (ENSPLOG00000009953)	OR4E2 (ENSPLOG00000009939)	ENSPLOG00000009929	ENSPLOG00000009911	OR10G3 (ENSPLOG00000009898)	SALL2 (ENSPLOG00000009866)	METTL3 (ENSPLOG00000009832)	TOX4 (ENSPLOG00000009812)	RAB2B (ENSPLOG00000009774) ##22	CHD8 (ENSPLOG00000009407) ##23	SUPT16H (ENSPLOG00000009194)	ENSPLOG00000009100	ENSPLOG00000009011	OR5AU1 (ENSPLOG00000008983)	TMEM253 (ENSPLOG00000008938)	ZNF219 (ENSPLOG00000008870)	ARHGEF40 (ENSPLOG00000008734)	ENSPLOG00000008653	TPPP2 (ENSPLOG00000008623)	ENSPLOG00000008367	SLC39A2 (ENSPLOG00000008270)	METTL17 (ENSPLOG00000008233)	ENSPLOG00000008183	RNASE6 (ENSPLOG00000008167)
Cat	MODERN SPECIES	237	ENSFCAG00000047093	ENSFCAG00000045688	ENSFCAG00000052593	ENSFCAG00000053851	TRAV4 (ENSFCAG00000043817)	ENSFCAG00000053588	ENSFCAG00000041621	TRAV3 (ENSFCAG00000052899)	OR4E1 (ENSFCAG00000022366)	OR4E2 (ENSFCAG00000019253)	OR10G2 (ENSFCAG00000051353)	OR10G3 (ENSFCAG00000029379)	SALL2 (ENSFCAG00000044786)	METTL3 (ENSFCAG00000013861)	TOX4 (ENSFCAG00000022692)	RAB2B (ENSFCAG00000007745) ##22	CHD8 (ENSFCAG00000013859) ##23	SUPT16H (ENSFCAG00000013858)	RPGRIP1 (ENSFCAG00000030866)	ENSFCAG00000014889	OR5AU1 (ENSFCAG00000014888)	TMEM253 (ENSFCAG00000025544)	ZNF219 (ENSFCAG00000014887)	ARHGEF40 (ENSFCAG00000014886)	ENSFCAG00000038708	TPPP2 (ENSFCAG00000014884)	SLC39A2 (ENSFCAG00000014882)	METTL17 (ENSFCAG00000014881)	NDRG2 (ENSFCAG00000014883)	RNASE1 (ENSFCAG00000022774)	RNASE6 (ENSFCAG00000027531)
Caniformia	ANCESTRAL SPECIES	12									ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000158014	ENSGT00940000157713	ENSGT00940000154980.cb	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00390000002417	ENSGT00940000153362.a	ENSGT00440000039564.b	ENSGT00390000005922.b.d.b.a.j	ENSGT00390000018775	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.e.a	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b.d	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00940000161733.h	ENSGT00390000004706
Red fox	MODERN SPECIES	9	SYT1 (ENSVVUG00000009998)	NAV3 (ENSVVUG00000009882)	E2F7 (ENSVVUG00000009839)	CSRP2 (ENSVVUG00000009828)	ZDHHC17 (ENSVVUG00000009811)	OSBPL8 (ENSVVUG00000009692)	BBS10 (ENSVVUG00000009650)	NAP1L1 (ENSVVUG00000009610)	ENSVVUG00000009581	KRR1 (ENSVVUG00000009566)	OR4E1 (ENSVVUG00000009561)	OR4E2 (ENSVVUG00000009557)	ENSVVUG00000009540	METTL3 (ENSVVUG00000009513)	TOX4 (ENSVVUG00000009505)	RAB2B (ENSVVUG00000009502) ##22	CHD8 (ENSVVUG00000009444) ##23	SUPT16H (ENSVVUG00000009434)	ENSVVUG00000009422	ENSVVUG00000009420	ENSVVUG00000009265	TMEM253 (ENSVVUG00000009250)	ENSVVUG00000009241	ARHGEF40 (ENSVVUG00000009112)	TPPP2 (ENSVVUG00000009100)	NDRG2 (ENSVVUG00000009092)	SLC39A2 (ENSVVUG00000009087)	METTL17 (ENSVVUG00000009081)	ENSVVUG00000009069	ENSVVUG00000009062	ENSVVUG00000009061
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000157713.q	ENSGT00940000154980.cb	ENSGT00530000063074.b.b	ENSGT00940000156622	ENSGT00390000002417	ENSGT00940000153362.a	ENSGT00440000039564.b	ENSGT00940000154612.m.a.g.a.b	ENSGT00390000005922.b.d.b.a.j	ENSGT00390000018775	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.e.a	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869	ENSGT00940000161733.g	ENSGT00390000004706
Dog	DUPLICATION
Dog	MODERN SPECIES	6	E2F7 (ENSCAFG00845006897)	ENSCAFG00845006746	ZDHHC17 (ENSCAFG00845006644)	OSBPL8 (ENSCAFG00845006249)	OSBPL8 (ENSCAFG00845006103)	ENSCAFG00845006055	NAP1L1 (ENSCAFG00845005932)	ENSCAFG00845005752	ENSCAFG00845027430	ENSCAFG00845027179	OR4E1 (ENSCAFG00845027061)	OR4E2 (ENSCAFG00845026975)	SALL2 (ENSCAFG00845026880)	METTL3 (ENSCAFG00845026804)	TOX4 (ENSCAFG00845026715)	RAB2B (ENSCAFG00845026579) ##22	CHD8 (ENSCAFG00845026020) ##23	ENSCAFG00845025950	SUPT16H (ENSCAFG00845025698)	RPGRIP1 (ENSCAFG00845025061)	ENSCAFG00845024839	TMEM253 (ENSCAFG00845024658)	ZNF219 (ENSCAFG00845024578)	ARHGEF40 (ENSCAFG00845024363)	RNASE13 (ENSCAFG00845024313)	TPPP2 (ENSCAFG00845024284)	NDRG2 (ENSCAFG00845023736)	SLC39A2 (ENSCAFG00845023563)	METTL17 (ENSCAFG00845023428)	ENSCAFG00845023381	ENSCAFG00845023346
Dog	MODERN SPECIES	25	SYNPO2 (ENSCAFG00845029946)	SEC24D (ENSCAFG00845029774)	METTL14 (ENSCAFG00845029674)	ENSCAFG00845029655	PRSS12 (ENSCAFG00845029625)	NDST3 (ENSCAFG00845029512)	TRAM1L1 (ENSCAFG00845029459)	ENSCAFG00845029353	ENSCAFG00845029324	ENSCAFG00845029266	ENSCAFG00845029165	ENSCAFG00845029150	NDST4 (ENSCAFG00845029101)	ENSCAFG00845029073	UGT8 (ENSCAFG00845028928)	ENSCAFG00845028859 ##22	ARSJ (ENSCAFG00845028819)	CAMK2D (ENSCAFG00845028435)	ANK2 (ENSCAFG00845020611)	LARP7 (ENSCAFG00845017248)	ZGRF1 (ENSCAFG00845017018)	NEUROG2 (ENSCAFG00845016784)	ENSCAFG00845016756	ALPK1 (ENSCAFG00845016654)	TIFA (ENSCAFG00845016552)	AP1AR (ENSCAFG00845016400)	FAM241A (ENSCAFG00845016273)	ENSCAFG00845016089	PITX2 (ENSCAFG00845016014)	ENSCAFG00845015951	ENPEP (ENSCAFG00845015843)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	308	SEC24D (ENSCAFG00020017464)	METTL14 (ENSCAFG00020017450)	ENSCAFG00020017446	PRSS12 (ENSCAFG00020017432)	NDST3 (ENSCAFG00020017398)	TRAM1L1 (ENSCAFG00020017395)	ENSCAFG00020017392	ENSCAFG00020017382	ENSCAFG00020017378	ENSCAFG00020017373	ENSCAFG00020017368	NDST4 (ENSCAFG00020017358)	ENSCAFG00020017353	UGT8 (ENSCAFG00020017350)	ENSCAFG00020017349	ENSCAFG00020017345 ##22	ARSJ (ENSCAFG00020017341)	ENSCAFG00020017332	ENSCAFG00020017278	ENSCAFG00020017243	LARP7 (ENSCAFG00020017225)	ENSCAFG00020017220	ENSCAFG00020017208	NEUROG2 (ENSCAFG00020017205)	ALPK1 (ENSCAFG00020017196)	TIFA (ENSCAFG00020017192)	AP1AR (ENSCAFG00020017172)	FAM241A (ENSCAFG00020017167)	ENSCAFG00020017152	ENSCAFG00020017149	ENSCAFG00020017147
Dingo	MODERN SPECIES	277	CSRP2 (ENSCAFG00020015512)	ZDHHC17 (ENSCAFG00020015453)	OSBPL8 (ENSCAFG00020015356)	BBS10 (ENSCAFG00020015335)	NAP1L1 (ENSCAFG00020015328)	ENSCAFG00020015316	ENSCAFG00020015310	ENSCAFG00020015296	KRR1 (ENSCAFG00020015286)	OR4E1 (ENSCAFG00020015285)	OR4E2 (ENSCAFG00020015283)	SALL2 (ENSCAFG00020015273)	METTL3 (ENSCAFG00020015265)	ENSCAFG00020015261	ENSCAFG00020015235 ##22	ENSCAFG00020015220 ##22	CHD8 (ENSCAFG00020014565) ##23	ENSCAFG00020014531	SUPT16H (ENSCAFG00020014529)	RPGRIP1 (ENSCAFG00020014517)	ENSCAFG00020014469	TMEM253 (ENSCAFG00020014456)	ZNF219 (ENSCAFG00020014450)	ARHGEF40 (ENSCAFG00020014442)	RNASE13 (ENSCAFG00020014438)	ENSCAFG00020014435	NDRG2 (ENSCAFG00020014429)	SLC39A2 (ENSCAFG00020014424)	METTL17 (ENSCAFG00020014416)	RNASE1 (ENSCAFG00020014411)	ENSCAFG00020014403
Caniformia_b	ANCESTRAL SPECIES	37									ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869
Ursidae	ANCESTRAL SPECIES	52											ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.g
Ursus	ANCESTRAL SPECIES	204											ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000164606	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869.g
Polar bear	MODERN SPECIES	450											ENSUMAG00000004988	OR10G3 (ENSUMAG00000004984)	SALL2 (ENSUMAG00000004963)	METTL3 (ENSUMAG00000004959)	TOX4 (ENSUMAG00000004943)	RAB2B (ENSUMAG00000004940) ##22	CHD8 (ENSUMAG00000004045) ##23	SUPT16H (ENSUMAG00000003881)	RPGRIP1 (ENSUMAG00000003812)	ENSUMAG00000003799	TMEM253 (ENSUMAG00000003780)	ARHGEF40 (ENSUMAG00000003538)	TPPP2 (ENSUMAG00000003509)	NDRG2 (ENSUMAG00000003492)	SLC39A2 (ENSUMAG00000003459)	METTL17 (ENSUMAG00000003450)	RNASE1 (ENSUMAG00000003444)	ENSUMAG00000003421
American black bear	MODERN SPECIES	8131																ENSUAMG00000014799 ##22
Mustelinae	ANCESTRAL SPECIES	66	ENSGT00940000155465	ENSGT00940000158689	ENSGT00950000182907.a.b.b.b	ENSGT00390000005362	ENSGT00940000162591	ENSGT00390000006043	ENSGT00940000158844	ENSGT00550000074698.k.b.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a.k ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962
Ferret	MODERN SPECIES	228	FEM1B (ENSMPUG00000000266)	ITGA11 (ENSMPUG00000000221)	CORO2B (ENSMPUG00000000220)	ENSMPUG00000000218	ENSMPUG00000000216	SPESP1 (ENSMPUG00000000214)	NOX5 (ENSMPUG00000000210)	GLCE (ENSMPUG00000000209)	PAQR5 (ENSMPUG00000000205)	RPLP1 (ENSMPUG00000000204)	OR4E1 (ENSMPUG00000019444)	OR4E2 (ENSMPUG00000019443)	SALL2 (ENSMPUG00000000199)	ENSMPUG00000000184	TOX4 (ENSMPUG00000000181)	RAB2B (ENSMPUG00000000177) ##22	CHD8 (ENSMPUG00000000174) ##23	SUPT16H (ENSMPUG00000000173)	RPGRIP1 (ENSMPUG00000000165)	ENSMPUG00000000164	OR5AU1 (ENSMPUG00000000161)	TMEM253 (ENSMPUG00000000157)	ZNF219 (ENSMPUG00000000156)	ARHGEF40 (ENSMPUG00000000154)	TPPP2 (ENSMPUG00000000153)	NDRG2 (ENSMPUG00000000150)	SLC39A2 (ENSMPUG00000000146)
American mink	MODERN SPECIES	46	ENSNVIG00000015596	ENSNVIG00000015562	SPESP1 (ENSNVIG00000015552)	NOX5 (ENSNVIG00000015522)	GLCE (ENSNVIG00000015508)	PAQR5 (ENSNVIG00000015474)	ENSNVIG00000015440	OR4E1 (ENSNVIG00000015435)	OR4E2 (ENSNVIG00000015433)	ENSNVIG00000015428	ENSNVIG00000015424	OR10G3 (ENSNVIG00000015421)	SALL2 (ENSNVIG00000015420)	METTL3 (ENSNVIG00000015402)	TOX4 (ENSNVIG00000015375)	RAB2B (ENSNVIG00000015360) ##22	CHD8 (ENSNVIG00000014519) ##23	SP16H (ENSNVIG00000014394)	ENSNVIG00000014377	ENSNVIG00000014346	ENSNVIG00000014228	TMEM253 (ENSNVIG00000014211)	ZNF219 (ENSNVIG00000014194)	ARHGEF40 (ENSNVIG00000014158)	TPPP2 (ENSNVIG00000014123)	NDRG2 (ENSNVIG00000013888)
Atlantogenata	ANCESTRAL SPECIES	2	ENSGT00940000163507	ENSGT00900000140957.A.a.a	ENSGT00940000153130.a.a.b	ENSGT00940000159469	ENSGT00940000153073.b.b.b.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Xenarthra	ANCESTRAL SPECIES	67						ENSGT00940000153073.b.b.a	ENSGT00740000116858	ENSGT00940000163058	ENSGT00940000163275	ENSGT00960000192631	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.d	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000162253
Sloth	MODERN SPECIES	2326														METTL3 (ENSCHOG00000000717)	TOX4 (ENSCHOG00000000714)	RAB2B (ENSCHOG00000000710) ##22
Armadillo	MODERN SPECIES	4425			TRAV3 (ENSDNOG00000036490)	TRAV2 (ENSDNOG00000044855)	ENSDNOG00000039417	OR4E2 (ENSDNOG00000032889)	ENSDNOG00000038006	ENSDNOG00000038718	ENSDNOG00000039647	ENSDNOG00000046672	ENSDNOG00000040316	OR10G3 (ENSDNOG00000031109)	SALL2 (ENSDNOG00000032317)	METTL3 (ENSDNOG00000045389)	TOX4 (ENSDNOG00000031174)	RAB2B (ENSDNOG00000006699) ##22	CHD8 (ENSDNOG00000005838) ##23	SUPT16H (ENSDNOG00000001227)	ENSDNOG00000030915	RPGRIP1 (ENSDNOG00000001219)	ENSDNOG00000003161	ENSDNOG00000041341	ENSDNOG00000041559	OR5AU1 (ENSDNOG00000001410)	TMEM253 (ENSDNOG00000035380)	ZNF219 (ENSDNOG00000019970)	ARHGEF40 (ENSDNOG00000019969)	ENSDNOG00000019968	RNASE13 (ENSDNOG00000036572)	TPPP2 (ENSDNOG00000019967)	NDRG2 (ENSDNOG00000019966)
Afrotheria	ANCESTRAL SPECIES	106						ENSGT00940000163906	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000163058	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869
Afrotheria_a	ANCESTRAL SPECIES	107						ENSGT00940000163906	ENSGT00940000154455.a.a	ENSGT00940000154455.a.b	ENSGT00940000153073.b.b.b.a	ENSGT00940000163058	ENSGT01050000244869.a.b.a	ENSGT01050000244869.a.b.b	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT00940000153402.c.b	ENSGT01100000263494.a.b.b.a	ENSGT00400000023212	ENSGT00940000161408	ENSGT00940000161599	ENSGT00940000163695	ENSGT00390000015830	ENSGT00940000153875.d.a	ENSGT00950000182872.f.b.b	ENSGT00940000160962	ENSGT00390000006103	ENSGT00940000160869
Hyrax	MODERN SPECIES	286															TOX4 (ENSPCAG00000007361)	ENSPCAG00000007291 ##22	CHD8 (ENSPCAG00000007099) ##23
Sauria	ANCESTRAL SPECIES	36	ENSGT00940000157808	ENSGT00390000005763	ENSGT00940000160134	ENSGT00530000063506.B	ENSGT00940000163076	ENSGT00940000162793.a	ENSGT01090000260011.B	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00960000186967	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00390000000337	ENSGT00960000190002
Archelosauria	ANCESTRAL SPECIES	60	ENSGT00730000111639	ENSGT01030000235488	ENSGT00940000164778	ENSGT01030000235661	ENSGT00940000162998	ENSGT00940000153073.f	ENSGT00940000153130.a	ENSGT00940000163507	ENSGT00940000153073.e.a	ENSGT00940000163052	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT01100000263537.a	ENSGT00940000153402
Cryptodira	ANCESTRAL SPECIES	91								ENSGT01050000244869.a.a.a.a.c	ENSGT01050000244869.a.a.a.b.c.a.c	ENSGT01050000244869.a.a.a.b.c.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT01100000263537.a	ENSGT00940000153402
Testudinoidea	ANCESTRAL SPECIES	55	ENSGT00940000163052	ENSGT00940000162998.c	ENSGT00940000153073.f.e.a.a	ENSGT00940000153130.a	ENSGT00940000163507.d.b	ENSGT00940000163507.c.a.a	ENSGT00940000160183	ENSGT01050000244869.a.a.b.g	ENSGT01050000244869.a.a.a.a.c	ENSGT01050000244869.a.a.a.b.c.a.c.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.b	ENSGT01100000263537.a	ENSGT00520000055620.A.a	ENSGT00940000153402
Emydidae	ANCESTRAL SPECIES	89	ENSGT00940000153073.f.f	ENSGT00940000153130.a.d	ENSGT00940000163507.c.a.a	ENSGT00940000160183.b	ENSGT01050000244869.a.a.b.g	ENSGT01050000244869.a.a.a.a.c.a	ENSGT01050000244869.a.a.a.b.c.a.c.a.a	ENSGT01050000244869.a.a.a.a.c.b	ENSGT01050000244869.a.a.a.b.c.a.c.b	ENSGT00940000163058	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.w	ENSGT00940000154888.x	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.b	ENSGT01100000263537.a	ENSGT00520000055620.A.a	ENSGT00940000153402
Three-toed box turtle	MODERN SPECIES	395	ENSTMTG00000009585	ENSTMTG00000009597	ENSTMTG00000009607	ENSTMTG00000009630	ENSTMTG00000009664	ENSTMTG00000009678	ENSTMTG00000009690	ENSTMTG00000009712	ENSTMTG00000009723	ENSTMTG00000009739	ENSTMTG00000009757	ENSTMTG00000009772	OR4E1 (ENSTMTG00000009781)	OR4E2 (ENSTMTG00000009793)	SALL2 (ENSTMTG00000009805)	RAB2B (ENSTMTG00000009817) ##22	ENSTMTG00000009837	SUPT16H (ENSTMTG00000009858)	RPGRIP1 (ENSTMTG00000009921)	ENSTMTG00000009971	ENSTMTG00000009985
painted turtle	MODERN SPECIES	1270												SALL2 (ENSCPBG00000012695)	METTL3 (ENSCPBG00000012694)	ENSCPBG00000012693	ENSCPBG00000012692	RAB2B (ENSCPBG00000012691) ##22	CHD8 (ENSCPBG00000012687) ##23	SUPT16H (ENSCPBG00000011489)	RPGRIP1 (ENSCPBG00000011444)	ENSCPBG00000011437
Testudinidae	ANCESTRAL SPECIES	70	ENSGT00940000153073.e.b.b	ENSGT00960000189404.f	ENSGT00940000153073.f.f	ENSGT00940000153130.a	ENSGT00940000163507.d.b	ENSGT00940000163224.a.a.b.b	ENSGT00940000163507.d.a	ENSGT00940000153073.e.a.a.b.a	ENSGT00940000153073.e.a.a.b.b	ENSGT01050000244869.a.a.a.a.c	ENSGT01050000244869.a.a.a.b.c.a.c.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.a	ENSGT00520000055620.A.b	ENSGT00940000153402
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	888															ENSCABG00000015293	ENSCABG00000015290 ##22	COX7C (ENSCABG00000015286)	RASA1 (ENSCABG00000014773)	CCNH (ENSCABG00000014765)
Abingdon island giant tortoise	MODERN SPECIES	1136	ENSCABG00000011026	ENSCABG00000011027	ENSCABG00000011028	ENSCABG00000011029	ENSCABG00000011031	ENSCABG00000011032	ENSCABG00000011033	ENSCABG00000011037	ENSCABG00000011038	ENSCABG00000011040	OR4E2 (ENSCABG00000011041)	ENSCABG00000011046	SALL2 (ENSCABG00000011047)	METTL3 (ENSCABG00000011049)	TOX4 (ENSCABG00000011051)	ENSCABG00000011052 ##22	CHD8 (ENSCABG00000011087) ##23	SUPT16H (ENSCABG00000012173)	ENSCABG00000012570	ENSCABG00000012576	TMPRSS15 (ENSCABG00000012580)	CHODL (ENSCABG00000012585)	C21orf91 (ENSCABG00000012587)
Goode s thornscrub tortoise	MODERN SPECIES	151	ENSGEVG00005015365	ENSGEVG00005015395	ENSGEVG00005015410	ENSGEVG00005015425	ENSGEVG00005015442	ENSGEVG00005015464	ENSGEVG00005015486	ENSGEVG00005015506	ENSGEVG00005015543	ENSGEVG00005015570	ENSGEVG00005015595	OR4E2 (ENSGEVG00005015637)	SALL2 (ENSGEVG00005015666)	METTL3 (ENSGEVG00005015698)	TOX4 (ENSGEVG00005015787)	RAB2B (ENSGEVG00005015809) ##22	CHD8 (ENSGEVG00005016310) ##23	SUPT16H (ENSGEVG00005019197)	ENSGEVG00005019387	ENSGEVG00005019409	ENSGEVG00005019420
Chinese turtle	MODERN SPECIES	397														METTL3 (ENSPSIG00000006018)	TOX4 (ENSPSIG00000007368)	RAB2B (ENSPSIG00000009056) ##22	ENSPSIG00000009770
Lepidosauria	ANCESTRAL SPECIES	106	ENSGT00940000163847.f	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000160147	ENSGT00940000154455	ENSGT00940000153073.f	ENSGT00940000162998	ENSGT00940000163224.b	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A	ENSGT01100000263537.a
tuatara	MODERN SPECIES	126	ENSSPUG00000009933	ENSSPUG00000009939	ENSSPUG00000009942	ENSSPUG00000009949	ENSSPUG00000009957	ENSSPUG00000009964	ENSSPUG00000009973	ENSSPUG00000009989	ENSSPUG00000010006	ENSSPUG00000010018	ENSSPUG00000010024	ENSSPUG00000010034	SALL2 (ENSSPUG00000010045)	ENSSPUG00000010089	ENSSPUG00000010102	RAB2B (ENSSPUG00000010112) ##22	SUPT16H (ENSSPUG00000010408)	BTBD1 (ENSSPUG00000010473)	C15orf40 (ENSSPUG00000010493)	ENSSPUG00000010499	HOMER2 (ENSSPUG00000010512)	ENSSPUG00000010544	WHAMM (ENSSPUG00000010552)	FSD2 (ENSSPUG00000010593)	ENSSPUG00000010665	ENSSPUG00000010676	ENSSPUG00000010686	ENSSPUG00000010693	ENSSPUG00000010702	ENSSPUG00000010709	GATM (ENSSPUG00000010726)
Episquamata	ANCESTRAL SPECIES	5	ENSGT01030000234536.a.d.a.a.a.b.a	ENSGT00940000163847.e.b	ENSGT01030000234536.a.d.a.a.a.b.b.b.b	ENSGT00940000163847.f	ENSGT01090000260086.A.c.a.b	ENSGT00390000016277.b	ENSGT00390000003324	ENSGT00940000153073.f.a.a.b.a	ENSGT01030000235661	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.c	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00940000153118.db.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b	ENSGT01060000248528.b.kh	ENSGT00950000183089	ENSGT01100000263514.A.f.o.a	ENSGT01100000263504.b	ENSGT01100000263559.B	ENSGT00940000156302.jc	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.b.a	ENSGT00990000203553.c.a.a.b.a.a.a.b
Toxicofera	ANCESTRAL SPECIES	13											ENSGT00940000163058.a	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.c	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00390000007600	ENSGT00960000190772	ENSGT00390000013834	ENSGT00940000160771	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT01030000234535.A.w	ENSGT00390000000592
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	51										ENSGT00940000163058.a	ENSGT00940000163275.b	ENSGT00940000163275.a.a	ENSGT00940000162245.a	ENSGT00550000075058.h	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a.n ##22	ENSGT00940000153649.B.g.a ##23	ENSGT00390000014495.a.b	ENSGT00520000055620.A.d	ENSGT01100000263537.a	ENSGT00940000153402.a	ENSGT00390000007600	ENSGT00960000190772	ENSGT00390000013834	ENSGT00940000160771	ENSGT00940000165211.a	ENSGT00940000165211.b	ENSGT01030000234571.b.b.a.a.b	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT01030000234535.A.w
Elapidae_a	ANCESTRAL SPECIES	153										ENSGT00940000163058.a	ENSGT00940000163275.b	ENSGT00940000163275.a.a	ENSGT00940000162245.a	ENSGT00550000075058.h	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a.n ##22	ENSGT00940000153649.B.g.a ##23	ENSGT00390000014495.a.b	ENSGT00390000014495.a.a	ENSGT00520000055620.A.c
Acanthophiinae	ANCESTRAL SPECIES	130										ENSGT00940000163058.a	ENSGT00940000163275.b	ENSGT00940000163275.a.a	ENSGT00940000162245.a	ENSGT00550000075058.h	ENSGT00940000154888.`b.a.a	ENSGT00940000153886.a.a.n ##22	ENSGT00940000153649.B.g.a.a ##23	ENSGT00390000014495.a.b.a	ENSGT00390000014495.a.a	ENSGT00520000055620.A.c	ENSGT00520000055620.A.d	ENSGT01100000263537.a	ENSGT00940000153402.a
Eastern brown snake	MODERN SPECIES	140										OR4E1 (ENSPTXG00000015472)	ENSPTXG00000015470	ENSPTXG00000015468	ENSPTXG00000015466	METTL3 (ENSPTXG00000015462)	ENSPTXG00000015460	RAB2B (ENSPTXG00000015457) ##22	ENSPTXG00000014554 ##23	ENSPTXG00000014116	ENSPTXG00000014109	ENSPTXG00000014107	ENSPTXG00000014106	ENSPTXG00000014105	ENSPTXG00000014104	ENSPTXG00000014103	ENSPTXG00000014102	ENSPTXG00000014101	ENSPTXG00000014100	ENSPTXG00000014099	ENSPTXG00000014098	ENSPTXG00000014097	ENSPTXG00000014096
Mainland tiger snake	MODERN SPECIES	210											OR4E1 (ENSNSUG00000018970)	ENSNSUG00000018969	ENSNSUG00000018968	METTL3 (ENSNSUG00000018966)	ENSNSUG00000018965	RAB2B (ENSNSUG00000018964) ##22	ENSNSUG00000018474 ##23	ENSNSUG00000018473	ENSNSUG00000018472	ENSNSUG00000018471	ENSNSUG00000018470	ENSNSUG00000018469	ENSNSUG00000018468	ENSNSUG00000018467	ENSNSUG00000018466	H3C14 (ENSNSUG00000018465)	ENSNSUG00000018464	ENSNSUG00000018463	ENSNSUG00000018462	PFAS (ENSNSUG00000018461)	ENSNSUG00000018460
Blue-lipped sea krait	MODERN SPECIES	5065												ENSLLTG00000003773	ENSLLTG00000003730	METTL3 (ENSLLTG00000003704)	TOX4 (ENSLLTG00000003672)	RAB2B (ENSLLTG00000003644) ##22
Indian cobra	MODERN SPECIES	337	ENSNNAG00000005649	ENSNNAG00000005633	ENSNNAG00000005618	OR10S1 (ENSNNAG00000005612)	ENSNNAG00000005596	ENSNNAG00000005584	ENSNNAG00000005560	ENSNNAG00000005552	ENSNNAG00000005520	ENSNNAG00000005483	ENSNNAG00000005444	ENSNNAG00000005424	METTL3 (ENSNNAG00000005384)	TOX4 (ENSNNAG00000005367)	ENSNNAG00000005328 ##22	ENSNNAG00000005290 ##22	ENSNNAG00000003862 ##23	ENSNNAG00000003706	ENSNNAG00000003677	ENSNNAG00000003656	ENSNNAG00000003645	ENSNNAG00000003629	ENSNNAG00000003622	ENSNNAG00000003602	ENSNNAG00000003590	ENSNNAG00000003580	ENSNNAG00000003564	ENSNNAG00000003544	ENSNNAG00000003537	ENSNNAG00000012839	RANGRF (ENSNNAG00000012820)
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a.o ##22
Indian cobra	MODERN SPECIES	337	ENSNNAG00000005655	ENSNNAG00000005649	ENSNNAG00000005633	ENSNNAG00000005618	OR10S1 (ENSNNAG00000005612)	ENSNNAG00000005596	ENSNNAG00000005584	ENSNNAG00000005560	ENSNNAG00000005552	ENSNNAG00000005520	ENSNNAG00000005483	ENSNNAG00000005444	ENSNNAG00000005424	METTL3 (ENSNNAG00000005384)	TOX4 (ENSNNAG00000005367)	ENSNNAG00000005328 ##22	ENSNNAG00000005290 ##22	ENSNNAG00000003862 ##23	ENSNNAG00000003706	ENSNNAG00000003677	ENSNNAG00000003656	ENSNNAG00000003645	ENSNNAG00000003629	ENSNNAG00000003622	ENSNNAG00000003602	ENSNNAG00000003590	ENSNNAG00000003580	ENSNNAG00000003564	ENSNNAG00000003544	ENSNNAG00000003537	ENSNNAG00000012839
Lizard	MODERN SPECIES	1078	ENSACAG00000035027	ENSACAG00000043469	ENSACAG00000045334	ENSACAG00000041993	ENSACAG00000029665	ENSACAG00000022679	ENSACAG00000045510	ENSACAG00000044435	ENSACAG00000045308	ENSACAG00000002837	ENSACAG00000043093	TRAV39 (ENSACAG00000038138)	OR4E1 (ENSACAG00000002843)	METTL3 (ENSACAG00000002851)	TOX4 (ENSACAG00000002921)	RAB2B (ENSACAG00000035863) ##22	CHD8 (ENSACAG00000003139) ##23	SUPT16H (ENSACAG00000003193)	RPGRIP1 (ENSACAG00000003274)	ENSACAG00000003293	ENSACAG00000029093	ENSACAG00000035394	ENSACAG00000028545	ENSACAG00000035911	ENSACAG00000036025	ENSACAG00000043863	ENSACAG00000003388	ENSACAG00000003391	ENSACAG00000003547	ENSACAG00000003563	ENSACAG00000003582
Laterata	ANCESTRAL SPECIES	24	ENSGT00940000153073.f.a.b	ENSGT00940000162998	ENSGT00940000163224.b	ENSGT00960000189404	ENSGT01050000244869.a.a.b.i	ENSGT01050000244869.a.a.a.a.b	ENSGT01050000244869.a.a.a.a.a.b.c	ENSGT01050000244869.a.a.a.a.a.a	ENSGT01050000244869.a.a.a.a.a.b.d	ENSGT00940000163058.a	ENSGT00940000163058.b	ENSGT00940000163275	ENSGT00940000162245	ENSGT00550000075058	ENSGT00940000154888.`b.a	ENSGT00940000153886.a.a ##22	ENSGT00940000153649.B ##23	ENSGT00390000014495	ENSGT00520000055620.A.c	ENSGT01100000263537.a	ENSGT00940000153402	ENSGT00390000007600	ENSGT00940000161324	ENSGT00390000013834	ENSGT00940000160771	ENSGT00940000165211	ENSGT01030000234571.b.b.a.a.b	ENSGT01030000234558.A.a.a.a	ENSGT00390000018426	ENSGT01030000234535.A.w.a	ENSGT00940000170094
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000013992	ENSPMRG00000013986	ENSPMRG00000013975	ENSPMRG00000013969	ENSPMRG00000013961	ENSPMRG00000013954	ENSPMRG00000013947	ENSPMRG00000013941	ENSPMRG00000013915	ENSPMRG00000013902	OR4E2 (ENSPMRG00000013896)	SALL2 (ENSPMRG00000013887)	METTL3 (ENSPMRG00000013873)	ENSPMRG00000013863	ENSPMRG00000013854	RAB2B (ENSPMRG00000013846) ##22	CHD8 (ENSPMRG00000013813) ##23	SUPT16H (ENSPMRG00000013774)	RPGRIP1 (ENSPMRG00000013738)	ENSPMRG00000013730	ENSPMRG00000013724	ENSPMRG00000013720	ENSPMRG00000013718	ENSPMRG00000013715	ENSPMRG00000013712	ENSPMRG00000013710	ENSPMRG00000013707	ENSPMRG00000013705	ENSPMRG00000013701	ENSPMRG00000013696	ENSPMRG00000013693
Argentine black and white tegu	MODERN SPECIES	38	ENSSMRG00000005089	ENSSMRG00000005094	ENSSMRG00000005100	ENSSMRG00000005148	ENSSMRG00000005151	ENSSMRG00000005153	ENSSMRG00000005158	ENSSMRG00000005161	ENSSMRG00000005165	ENSSMRG00000005167	OR4E1 (ENSSMRG00000005172)	OR4E2 (ENSSMRG00000005177)	SALL2 (ENSSMRG00000005182)	METTL3 (ENSSMRG00000005190)	TOX4 (ENSSMRG00000005197)	RAB2B (ENSSMRG00000005201) ##22	CHD8 (ENSSMRG00000005202) ##23	SUPT16H (ENSSMRG00000005280)	RPGRIP1 (ENSSMRG00000005292)	ENSSMRG00000005309	ENSSMRG00000005311	ENSSMRG00000005315	ENSSMRG00000005323	ENSSMRG00000005330	ENSSMRG00000005339	ENSSMRG00000005341	ENSSMRG00000005346	ENSSMRG00000005353	ENSSMRG00000005363	ENSSMRG00000005382	ENSSMRG00000005411
Coelacanth	MODERN SPECIES	901	ENSLACG00000008069	ENSLACG00000008771	ENSLACG00000008902	ENSLACG00000008948	ENSLACG00000009629	ENSLACG00000010414	ENSLACG00000010715	ENSLACG00000011016	ENSLACG00000011079	ENSLACG00000011322	ENSLACG00000012502	ENSLACG00000013612	ENSLACG00000014018	METTL3 (ENSLACG00000014108)	TOX4 (ENSLACG00000014300)	RAB2B (ENSLACG00000014446) ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153886.a.a ##22
Hagfish	MODERN SPECIES	1448			ENSEBUG00000002352	ENSEBUG00000002298	ENSEBUG00000001835	ENSEBUG00000005051	ENSEBUG00000009732	ENSEBUG00000004089	ENSEBUG00000013981	ZBTB18 (ENSEBUG00000011621)	ENSEBUG00000002163	ENSEBUG00000004412	ENSEBUG00000015965	mettl3 (ENSEBUG00000012428)	ENSEBUG00000008922	RAB2B (ENSEBUG00000007110) ##22	ENSEBUG00000000485	CSNK2A2 (ENSEBUG00000010907)	ENSEBUG00000001266	ENSEBUG00000016848	ENSEBUG00000001323	ENSEBUG00000015001	ENSEBUG00000011373	ENSEBUG00000011033	ENSEBUG00000009499
Chordata	ANCESTRAL SPECIES																	ENSGT00940000153886.b ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153886.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153886.b ##22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	1971														ENSPMAG00000003289	ENSPMAG00000003292	ENSPMAG00000003300 ##22
Lamprey	MODERN SPECIES	3406																ENSPMAG00000008764 ##22
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00940000153886 #22
Fruitfly	MODERN SPECIES	17	geminin (FBgn0033081)	sced (FBgn0013732)	Dpit47 (FBgn0266518)	Adf1 (FBgn0284249)	CG15908 (FBgn0033085)	CG9410 (FBgn0033086)	Hsepi (FBgn0033087)	PGAP3 (FBgn0033088)	CG17266 (FBgn0033089)	Rpp25 (FBgn0033092)	Tdc1 (FBgn0259977)	CG15909 (FBgn0033090)	Tdc2 (FBgn0050446)	CG3270 (FBgn0033093)	Mob4 (FBgn0259483)	Rab2 (FBgn0014009) #22	chk (FBgn0033095)	CG45092 (FBgn0266525)	Zip42C.1 (FBgn0033096)	Zip42C.2 (FBgn0033097)	hlk (FBgn0010482)	phtf (FBgn0028579)	Mccc2 (FBgn0042083)	Eb1 (FBgn0027066)	CG3420 (FBgn0033100)	CG9436 (FBgn0033101)	Epac (FBgn0085421)	Cyp6a2 (FBgn0000473)	SdhB (FBgn0014028)	CG15237 (FBgn0033104)	ubl (FBgn0022224)
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	DUPLICATION
Caenorhabditis elegans	MODERN SPECIES	5	F10A3.17 (WBGene00045507)	str-109 (WBGene00006161)	F10A3.11 (WBGene00008636)	F10A3.12 (WBGene00008637)	str-108 (WBGene00006160)	str-111 (WBGene00006162)	K05D4.9 (WBGene00010591)	cyp-33D1 (WBGene00010589)	str-106 (WBGene00006159)	srz-13 (WBGene00010590)	srh-277 (WBGene00005482)	srz-14 (WBGene00010588)	srh-281 (WBGene00005486)	srh-279 (WBGene00005484)	F11A5.3 (WBGene00008671) #22	F11A5.4 (WBGene00008672) #22	F11A5.5 (WBGene00008673)	F11A5.17 (WBGene00045510)	F11A5.18 (WBGene00045511)	irld-26 (WBGene00008675)	oac-15 (WBGene00008676)	F11A5.16 (WBGene00044184)	F11A5.9 (WBGene00008677)	F11A5.15 (WBGene00008680)	glc-1 (WBGene00001591)	stdh-2 (WBGene00008678)	F11A5.13 (WBGene00008679)	F21H7.2 (WBGene00009028)	F21H7.12 (WBGene00009033)	gst-22 (WBGene00001770)	F21H7.3 (WBGene00009029)
Caenorhabditis elegans	MODERN SPECIES	5	str-99 (WBGene00006155)	F10A3.17 (WBGene00045507)	str-109 (WBGene00006161)	F10A3.11 (WBGene00008636)	F10A3.12 (WBGene00008637)	str-108 (WBGene00006160)	str-111 (WBGene00006162)	K05D4.9 (WBGene00010591)	cyp-33D1 (WBGene00010589)	str-106 (WBGene00006159)	srz-13 (WBGene00010590)	srh-277 (WBGene00005482)	srz-14 (WBGene00010588)	srh-281 (WBGene00005486)	srh-279 (WBGene00005484)	F11A5.3 (WBGene00008671) #22	F11A5.4 (WBGene00008672) #22	F11A5.5 (WBGene00008673)	F11A5.17 (WBGene00045510)	F11A5.18 (WBGene00045511)	irld-26 (WBGene00008675)	oac-15 (WBGene00008676)	F11A5.16 (WBGene00044184)	F11A5.9 (WBGene00008677)	F11A5.15 (WBGene00008680)	glc-1 (WBGene00001591)	stdh-2 (WBGene00008678)	F11A5.13 (WBGene00008679)	F21H7.2 (WBGene00009028)	F21H7.12 (WBGene00009033)	gst-22 (WBGene00001770)
Caenorhabditis elegans	MODERN SPECIES		asic-1 (WBGene00022815)	C32E8.12 (WBGene00194702)	C32E8.6 (WBGene00016324)	C32E8.13 (WBGene00284853)	ric-19 (WBGene00004368)	pmlr-1 (WBGene00016323)	C32E8.4 (WBGene00016322)	tppp-1 (WBGene00016321)	rpl-13 (WBGene00004425)	ptr-2 (WBGene00004217)	C32E8.9 (WBGene00016325)	C32E8.1 (WBGene00016320)	unc-11 (WBGene00006751)	ubr-1 (WBGene00016326)	npp-11 (WBGene00003797)	unc-108 (WBGene00006833) #22	mpc-2 (WBGene00018765)	F53F10.8 (WBGene00044423)	F53F10.2 (WBGene00018764)	F53F10.1 (WBGene00018763)	gsp-4 (WBGene00020187)	T03F1.6 (WBGene00020188)	T03F1.11 (WBGene00020192)	tfbm-1 (WBGene00020189)	guk-1 (WBGene00020190)	hcp-4 (WBGene00001832)	pgk-1 (WBGene00020185)	coq-4 (WBGene00000764)	clec-53 (WBGene00020191)	uba-5 (WBGene00020184)	T03F1.12 (WBGene00020193)