Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000003748 #7	ENSGT00940000157850 #8	ENSGT00940000159282 #9	ENSGT00390000002049.c.b.u.a #10	ENSGT00390000002049.c.b.u.b #12	ENSGT00940000155363 #13	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #14	ENSGT01030000234542.b.a.a.b.a.a #15	ENSGT00940000154699 #16	ENSGT00940000162206.o #17	ENSGT00940000162206.p #18	ENSGT00950000183083.a.d.a #19	ENSGT00940000157387 #20	ENSGT00390000006883 #21	ENSGT00940000154257.j #22	ENSGT00940000160522 #23	ENSGT00940000158531 #24	ENSGT00390000014572.nd #25	ENSGT00940000159331.b #26	ENSGT00390000004985.b #27	ENSGT00940000157461 #28	ENSGT00940000155405 #29	ENSGT00940000157691 #30	ENSGT00940000156573 #31	ENSGT00390000016607.a #32	ENSGT00520000062301 #33	ENSGT00940000160579 #34	ENSGT00940000157602 #35	ENSGT00940000160582 #36	ENSGT00940000158898 #37
Ryukyu mouse	MODERN SPECIES	18	Fbxl22 (MGP_CAROLIEiJ_G0032379) #7	Usp3 (MGP_CAROLIEiJ_G0032380) #8	Car12 (MGP_CAROLIEiJ_G0032381) #9	Aph1b (MGP_CAROLIEiJ_G0032382) #10	MGP_CAROLIEiJ_G0032383 #11	MGP_CAROLIEiJ_G0032384 #12	Rab8b (MGP_CAROLIEiJ_G0032385) #13	Lactb (MGP_CAROLIEiJ_G0032387) #14	Tpm1 (MGP_CAROLIEiJ_G0032388) #15	Tln2 (MGP_CAROLIEiJ_G0032389) #16	C2cd4b (MGP_CAROLIEiJ_G0032390) #17	C2cd4a (MGP_CAROLIEiJ_G0032391) #18	Vps13c (MGP_CAROLIEiJ_G0032392) #19	Rora (MGP_CAROLIEiJ_G0032393) #20	Ice2 (MGP_CAROLIEiJ_G0032394) #21	Anxa2 (MGP_CAROLIEiJ_G0032395) #22	Foxb1 (MGP_CAROLIEiJ_G0032396) #23	Bnip2 (MGP_CAROLIEiJ_G0032397) #24	Gtf2a2 (MGP_CAROLIEiJ_G0032398) #25	Gcnt3 (MGP_CAROLIEiJ_G0032399) #26	Fam81a (MGP_CAROLIEiJ_G0032400) #27	Myo1e (MGP_CAROLIEiJ_G0032401) #28	Ccnb2 (MGP_CAROLIEiJ_G0032402) #29	Rnf111 (MGP_CAROLIEiJ_G0032403) #30	Sltm (MGP_CAROLIEiJ_G0032404) #31	Mindy2 (MGP_CAROLIEiJ_G0032405) #32	MGP_CAROLIEiJ_G0032406 #33	Adam10 (MGP_CAROLIEiJ_G0032407) #34	Lipc (MGP_CAROLIEiJ_G0032408) #35	Aqp9 (MGP_CAROLIEiJ_G0032409) #36	Aldh1a2 (MGP_CAROLIEiJ_G0032410) #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000003748 #7	ENSGT00940000157850 #8	ENSGT00940000159282 #9	ENSGT00390000002049.c.b.u.a #10	ENSGT00390000002049.c.b.u.b #12	ENSGT00940000155363 #13	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #14	ENSGT01030000234542.b.a.a.b.a.a #15	ENSGT00940000154699 #16	ENSGT00940000162206.o #17	ENSGT00940000162206.p #18	ENSGT00950000183083.a.d.a #19	ENSGT00940000157387 #20	ENSGT00390000006883 #21	ENSGT00940000154257.j #22	ENSGT00940000160522 #23	ENSGT00940000158531 #24	ENSGT00390000014572.nd #25	ENSGT00940000159331.b #26	ENSGT00390000004985.b #27	ENSGT00940000157461 #28	ENSGT00940000155405 #29	ENSGT00940000157691 #30	ENSGT00940000156573 #31	ENSGT00390000016607.a #32	ENSGT00520000062301 #33	ENSGT00940000160579 #34	ENSGT00940000157602 #35	ENSGT00940000160582 #36	ENSGT00940000158898 #37
Mouse	MODERN SPECIES	18	Fbxl22 (ENSMUSG00000050503) #7	Usp3 (ENSMUSG00000032376) #8	Car12 (ENSMUSG00000032373) #9	Aph1b (ENSMUSG00000032375) #10	Aph1c (ENSMUSG00000053040) #12	Rab8b (ENSMUSG00000036943) #13	Rps27l (ENSMUSG00000036781)	Lactb (ENSMUSG00000032370) #14	Tpm1 (ENSMUSG00000032366) #15	Tln2 (ENSMUSG00000052698) #16	C2cd4b (ENSMUSG00000091956) #17	C2cd4a (ENSMUSG00000047990) #18	Vps13c (ENSMUSG00000035284) #19	Rora (ENSMUSG00000032238) #20	Ice2 (ENSMUSG00000032235) #21	Anxa2 (ENSMUSG00000032231) #22	Foxb1 (ENSMUSG00000059246) #23	Bnip2 (ENSMUSG00000011958) #24	Gtf2a2 (ENSMUSG00000033543) #25	Gcnt3 (ENSMUSG00000032226) #26	Fam81a (ENSMUSG00000032224) #27	Myo1e (ENSMUSG00000032220) #28	Ccnb2 (ENSMUSG00000032218) #29	Rnf111 (ENSMUSG00000032217) #30	Sltm (ENSMUSG00000032212) #31	Mindy2 (ENSMUSG00000042444) #32	Adam10 (ENSMUSG00000054693) #34	Lipc (ENSMUSG00000032207) #35	Aqp9 (ENSMUSG00000032204) #36	Aldh1a2 (ENSMUSG00000013584) #37	Polr2m (ENSMUSG00000032199)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000003748 #7	ENSGT00940000157850 #8	ENSGT00940000159282 #9	ENSGT00390000002049.c.b.u.a #10	ENSGT00390000002049.c.b.u.b #12	ENSGT00940000155363 #13	ENSGT00950000182891.a.a.a	ENSGT00390000001062 #14	ENSGT01030000234542.b.a.a.b.a.a #15	ENSGT00940000154699 #16	ENSGT00940000162206.o #17	ENSGT00940000162206.p #18	ENSGT00950000183083.a.d.a #19	ENSGT00940000157387 #20	ENSGT00390000006883 #21	ENSGT00940000154257.j #22	ENSGT00940000160522 #23	ENSGT00940000158531 #24	ENSGT00390000014572.nd #25	ENSGT00940000159331.b #26	ENSGT00390000004985.b #27	ENSGT00940000157461 #28	ENSGT00940000155405 #29	ENSGT00940000157691 #30	ENSGT00940000156573 #31	ENSGT00390000016607.a #32	ENSGT00520000062301 #33	ENSGT00940000160579 #34	ENSGT00940000157602 #35	ENSGT00940000160582 #36	ENSGT00940000158898 #37
Steppe mouse	MODERN SPECIES	3341	Car12 (ENSMSIG00000022296) #9	ENSMSIG00000022339 ##12	ENSMSIG00000022353 #11	Aph1c (ENSMSIG00000022355) #12	Rab8b (ENSMSIG00000022369) #13	ENSMSIG00000022374	Lactb (ENSMSIG00000022397) #14	Tpm1 (ENSMSIG00000022438) #15	ENSMSIG00000023676	Tln2 (ENSMSIG00000023708) #16	C2cd4b (ENSMSIG00000023890) #17	C2cd4a (ENSMSIG00000023906) #18	Vps13c (ENSMSIG00000023921) #19	Rora (ENSMSIG00000024229) #20	Ice2 (ENSMSIG00000024296) #21	ENSMSIG00000024328 #22	ENSMSIG00000024362	Foxb1 (ENSMSIG00000024373) #23	Bnip2 (ENSMSIG00000024382) #24	Gtf2a2 (ENSMSIG00000024440) #25	Gcnt3 (ENSMSIG00000024447) #26	Fam81a (ENSMSIG00000024458) #27	Myo1e (ENSMSIG00000024480) #28	Ccnb2 (ENSMSIG00000024583) #29	Rnf111 (ENSMSIG00000024613) #30	Sltm (ENSMSIG00000024797) #31	ENSMSIG00000024868	Mindy2 (ENSMSIG00000024872) #32	ENSMSIG00000024899 #33	Adam10 (ENSMSIG00000024905) #34	Lipc (ENSMSIG00000024928) #35
spretus	MODERN SPECIES	18	Fbxl22 (MGP_SPRETEiJ_G0033518) #7	Usp3 (MGP_SPRETEiJ_G0033519) #8	Car12 (MGP_SPRETEiJ_G0033520) #9	Aph1b (MGP_SPRETEiJ_G0033521) #10	Aph1c (MGP_SPRETEiJ_G0033522) #12	Rab8b (MGP_SPRETEiJ_G0033523) #13	Rps27l (MGP_SPRETEiJ_G0033524)	Lactb (MGP_SPRETEiJ_G0033525) #14	Tpm1 (MGP_SPRETEiJ_G0033526) #15	Tln2 (MGP_SPRETEiJ_G0033527) #16	MGP_SPRETEiJ_G0033528 #17	C2cd4a (MGP_SPRETEiJ_G0033529) #18	Vps13c (MGP_SPRETEiJ_G0033530) #19	Rora (MGP_SPRETEiJ_G0033531) #20	Ice2 (MGP_SPRETEiJ_G0033532) #21	Anxa2 (MGP_SPRETEiJ_G0033533) #22	Foxb1 (MGP_SPRETEiJ_G0033534) #23	Bnip2 (MGP_SPRETEiJ_G0033535) #24	Gtf2a2 (MGP_SPRETEiJ_G0033536) ##25	Gcnt3 (MGP_SPRETEiJ_G0033537) #26	Fam81a (MGP_SPRETEiJ_G0033538) #27	Myo1e (MGP_SPRETEiJ_G0033539) #28	Ccnb2 (MGP_SPRETEiJ_G0033540) #29	Rnf111 (MGP_SPRETEiJ_G0033541) #30	Sltm (MGP_SPRETEiJ_G0033542) #31	Mindy2 (MGP_SPRETEiJ_G0033543) #32	MGP_SPRETEiJ_G0033544 #33	Adam10 (MGP_SPRETEiJ_G0033545) #34	Lipc (MGP_SPRETEiJ_G0033546) #35	Aqp9 (MGP_SPRETEiJ_G0033547) #36	Aldh1a2 (MGP_SPRETEiJ_G0033548) #37