Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.a #22
Gnathostomata	ANCESTRAL SPECIES	348															ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972 #30
Euteleostomi	ANCESTRAL SPECIES	483															ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00440000033870	ENSGT00940000174617	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b
Sarcopterygii	ANCESTRAL SPECIES	141	ENSGT00940000153270.b.b	ENSGT01090000260076.a	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00940000177628	ENSGT00940000165248	ENSGT00730000110943.C #24
Tetrapoda	ANCESTRAL SPECIES	47	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00940000160658 #26	ENSGT00730000111263 #29	ENSGT00390000016972 #30	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a	ENSGT00390000000263	ENSGT00940000157155	ENSGT00390000015492.B
Amniota	ANCESTRAL SPECIES	13	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026
Mammalia	ANCESTRAL SPECIES	49	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.b ##30	ENSGT00390000016972.a.b.a.b ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.b.b ##30	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026
Theria	ANCESTRAL SPECIES	40	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000008796 #32	ENSGT00390000003114.e.b.a	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.b ##30	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00410000029265	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01050000248337	ENSGT00980000201931	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Carnivora	ANCESTRAL SPECIES	10	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01050000248337	ENSGT00980000201931	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Felidae	ANCESTRAL SPECIES	9	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00940000168934.b	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Panthera	ANCESTRAL SPECIES	17	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00940000168934.b	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Panthera_a	ANCESTRAL SPECIES	21	ENSGT00390000001143	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00900000143497
leopard	MODERN SPECIES	15	ENSPPRG00000010478 #7	CEP19 (ENSPPRG00000010673) #8	NRROS (ENSPPRG00000010920) #9	ENSPPRG00000011747 #10	FBXO45 (ENSPPRG00000012529) #11	WDR53 (ENSPPRG00000013406) #12	SMCO1 (ENSPPRG00000013648) #13	ENSPPRG00000013973 #14	RNF168 (ENSPPRG00000014220) #15	UBXN7 (ENSPPRG00000017504) #16	TM4SF19 (ENSPPRG00000020208) #17	DYNLT2B (ENSPPRG00000023973) #18	PCYT1A (ENSPPRG00000022925) #19	SLC51A (ENSPPRG00000000119) #20	ZDHHC19 (ENSPPRG00000000431) #21	TFRC (ENSPPRG00000001839) #22	TNK2 (ENSPPRG00000003511) #23	ENSPPRG00000005323 #24	ENSPPRG00000006641 #25	RUBCN (ENSPPRG00000009295) #26	FYTTD1 (ENSPPRG00000009562) #27	LRCH3 (ENSPPRG00000013653) #28	IQCG (ENSPPRG00000017189) #29	RPL35A (ENSPPRG00000018520) #30	ENSPPRG00000020369 #31	LMLN (ENSPPRG00000023158) #32	OSBPL11 (ENSPPRG00000022907) #33	SNX4 (ENSPPRG00000000334) #34	ZNF148 (ENSPPRG00000001262) #35	SLC12A8 (ENSPPRG00000001909) #36	HEG1 (ENSPPRG00000003493) #37
lion	MODERN SPECIES	9	ENSPLOG00000017943	PIGX (ENSPLOG00000017975) #7	CEP19 (ENSPLOG00000018019) #8	NRROS (ENSPLOG00000018038) #9	FBXO45 (ENSPLOG00000018072) #11	WDR53 (ENSPLOG00000018130) #12	SMCO1 (ENSPLOG00000018166) #13	RNF168 (ENSPLOG00000004805) #15	ENSPLOG00000004818 #14	ENSPLOG00000004838	TM4SF19 (ENSPLOG00000004877) #17	DYNLT2B (ENSPLOG00000004915) #18	PCYT1A (ENSPLOG00000004901) #19	SLC51A (ENSPLOG00000004940) #20	ZDHHC19 (ENSPLOG00000004968) #21	TFRC (ENSPLOG00000005032) #22	TNK2 (ENSPLOG00000005245) #23	ENSPLOG00000005348 #24	ENSPLOG00000005476 #25	RUBCN (ENSPLOG00000005552) #26	FYTTD1 (ENSPLOG00000005664) #27	LRCH3 (ENSPLOG00000005748) #28	IQCG (ENSPLOG00000005816) #29	ENSPLOG00000005859 #30	LMLN (ENSPLOG00000006005) #32	ENSPLOG00000006388 #31	OSBPL11 (ENSPLOG00000006414) #33	SNX4 (ENSPLOG00000006479) #34	ZNF148 (ENSPLOG00000006542) #35	SLC12A8 (ENSPLOG00000006592) #36	HEG1 (ENSPLOG00000006671) #37
Tiger	MODERN SPECIES	340	PAK2 (ENSPTIG00000009617)	ENSPTIG00000009593	ENSPTIG00000009539 #7	CEP19 (ENSPTIG00000009500) #8	NRROS (ENSPTIG00000009424) #9	FBXO45 (ENSPTIG00000009391) #11	WDR53 (ENSPTIG00000009374) #12	SMCO1 (ENSPTIG00000009346) #13	RNF168 (ENSPTIG00000009329) #15	ENSPTIG00000009291	TM4SF19 (ENSPTIG00000009278) #17	DYNLT2B (ENSPTIG00000009241) #18	PCYT1A (ENSPTIG00000009221) #19	SLC51A (ENSPTIG00000009166) #20	ZDHHC19 (ENSPTIG00000009154) #21	TFRC (ENSPTIG00000008108) #22	TNK2 (ENSPTIG00000007770) #23	ENSPTIG00000007476 #24	ENSPTIG00000007123 #25	RUBCN (ENSPTIG00000006520) #26	FYTTD1 (ENSPTIG00000006326) #27	LRCH3 (ENSPTIG00000003598) #28	IQCG (ENSPTIG00000003090) #29
Cat	MODERN SPECIES	240	PAK2 (ENSFCAG00000025611)	PIGX (ENSFCAG00000018154) #7	CEP19 (ENSFCAG00000035136) #8	NRROS (ENSFCAG00000005977) #9	FBXO45 (ENSFCAG00000032581) #11	WDR53 (ENSFCAG00000042036) #12	SMCO1 (ENSFCAG00000038456) #13	ENSFCAG00000038329 #14	RNF168 (ENSFCAG00000022131) #15	UBXN7 (ENSFCAG00000007654)	TM4SF19 (ENSFCAG00000007652) #17	DYNLT2B (ENSFCAG00000029725) #18	PCYT1A (ENSFCAG00000024228) #19	SLC51A (ENSFCAG00000007648) #20	ZDHHC19 (ENSFCAG00000007647) #21	TFRC (ENSFCAG00000003694) #22	TNK2 (ENSFCAG00000002658) #23	MUC4 (ENSFCAG00000011428) #24	RUBCN (ENSFCAG00000009991) #26	FYTTD1 (ENSFCAG00000009992) #27	LRCH3 (ENSFCAG00000029889) #28	IQCG (ENSFCAG00000019052) #29	RPL35A (ENSFCAG00000041509) #30	ENSFCAG00000032261	LMLN (ENSFCAG00000026594) #32	ENSFCAG00000047412	OSBPL11 (ENSFCAG00000012556) #33	SNX4 (ENSFCAG00000031749) #34	ZNF148 (ENSFCAG00000026852) #35	SLC12A8 (ENSFCAG00000031963) #36	HEG1 (ENSFCAG00000015098) #37
Caniformia	ANCESTRAL SPECIES		ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01050000248337	ENSGT00980000201931	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.o #30	ENSGT00390000016972.a.a.a.n.b #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.n.b #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT01010000222707	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.o #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A.f #37
Ursus	ANCESTRAL SPECIES	22	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00940000154831	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00390000015823.gb.a	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000111453 #25	ENSGT01010000222707	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.b.a.b.b.b.q ##30
American black bear	MODERN SPECIES	867										ENSUAMG00000028404 #17	DYNLT2B (ENSUAMG00000028405) #18	ENSUAMG00000028406	PCYT1A (ENSUAMG00000028407) #19	SLC51A (ENSUAMG00000028408) #20	ZDHHC19 (ENSUAMG00000028409) #21	TFRC (ENSUAMG00000028410) #22	TNK2 (ENSUAMG00000028411) #23
Polar bear	MODERN SPECIES	319	PAK2 (ENSUMAG00000003172)	PIGX (ENSUMAG00000003183) #7	ENSUMAG00000003209 #8	NRROS (ENSUMAG00000003210) #9	FBXO45 (ENSUMAG00000003216) #11	WDR53 (ENSUMAG00000003221) #12	SMCO1 (ENSUMAG00000003223) #13	RNF168 (ENSUMAG00000003226) #15	ENSUMAG00000003229	TM4SF19 (ENSUMAG00000003234) #17	DYNLT2B (ENSUMAG00000003236) #18	ENSUMAG00000003240	PCYT1A (ENSUMAG00000003244) #19	SLC51A (ENSUMAG00000003251) #20	ZDHHC19 (ENSUMAG00000003263) #21	TFRC (ENSUMAG00000003273) #22	TNK2 (ENSUMAG00000003278) #23	ENSUMAG00000003335 #25	RUBCN (ENSUMAG00000003349) #26	FYTTD1 (ENSUMAG00000003373) #27	LRCH3 (ENSUMAG00000003386) #28	IQCG (ENSUMAG00000003419) #29	ENSUMAG00000003441 ##30	LMLN (ENSUMAG00000003480) #32	ENSUMAG00000003615
Giant Panda	MODERN SPECIES		SENP5 (ENSAMEG00000003683)	PAK2 (ENSAMEG00000003707)	PIGX (ENSAMEG00000003759) #7	CEP19 (ENSAMEG00000003767) #8	NRROS (ENSAMEG00000003770) #9	FBXO45 (ENSAMEG00000003775) #11	WDR53 (ENSAMEG00000003780) #12	SMCO1 (ENSAMEG00000003782) #13	RNF168 (ENSAMEG00000003786) #15	UBXN7 (ENSAMEG00000003790) #16	TM4SF19 (ENSAMEG00000003811) #17	DYNLT2B (ENSAMEG00000003829) #18	PCYT1A (ENSAMEG00000003835) #19	SLC51A (ENSAMEG00000003867) #20	ZDHHC19 (ENSAMEG00000003887) #21	TFRC (ENSAMEG00000003898) #22	TNK2 (ENSAMEG00000003981) #23	ENSAMEG00000004020 #24	ENSAMEG00000004040 #25	ENSAMEG00000027091	ENSAMEG00000004045 #26	FYTTD1 (ENSAMEG00000004083) #27	LRCH3 (ENSAMEG00000004100) #28	ENSAMEG00000004153 #29	RPL35A (ENSAMEG00000004181) #30	ENSAMEG00000002325	ENSAMEG00000004187 #32	ENSAMEG00000004217 #33	SNX4 (ENSAMEG00000004231) #34	ZNF148 (ENSAMEG00000004258) #35	SLC12A8 (ENSAMEG00000004287) #36
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356.b #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.n.b #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Ferret	MODERN SPECIES	176	SENP5 (ENSMPUG00000003818)	PAK2 (ENSMPUG00000003828)	PIGX (ENSMPUG00000003841) #7	CEP19 (ENSMPUG00000003867) #8	NRROS (ENSMPUG00000003873) #9	FBXO45 (ENSMPUG00000003881) #11	WDR53 (ENSMPUG00000003890) #12	SMCO1 (ENSMPUG00000003892) #13	RNF168 (ENSMPUG00000003897) #15	UBXN7 (ENSMPUG00000003906) #16	ENSMPUG00000003916 #17	DYNLT2B (ENSMPUG00000003923) #18	PCYT1A (ENSMPUG00000003939) #19	SLC51A (ENSMPUG00000003949) #20	ZDHHC19 (ENSMPUG00000003959) #21	TFRC (ENSMPUG00000003996) #22	TNK2 (ENSMPUG00000004016) #23	ENSMPUG00000004022	ENSMPUG00000004026 #24	ENSMPUG00000004071 #25	RUBCN (ENSMPUG00000004078) #26	FYTTD1 (ENSMPUG00000004085) #27	LRCH3 (ENSMPUG00000004097) #28	IQCG (ENSMPUG00000004115) #29	ENSMPUG00000004124 #30	LMLN (ENSMPUG00000004130) #32	ENSMPUG00000004138	OSBPL11 (ENSMPUG00000004142) #33	SNX4 (ENSMPUG00000004151) #34	ZNF148 (ENSMPUG00000004162) #35	SLC12A8 (ENSMPUG00000004175) #36
American mink	MODERN SPECIES	159																TFRC (ENSNVIG00000011746) #22	TNK2 (ENSNVIG00000011909) #23	ENSNVIG00000011998	ENSNVIG00000012022 #24	ENSNVIG00000012125 #25	RUBCN (ENSNVIG00000012147) #26	UIF (ENSNVIG00000012256) #27	LRCH3 (ENSNVIG00000012304) #28	ENSNVIG00000012446	ENSNVIG00000012456 #30	LMLN (ENSNVIG00000012494) #32	OSBPL11 (ENSNVIG00000012608) #33	SNX4 (ENSNVIG00000012621) #34	ZNF148 (ENSNVIG00000012644) #35	SLC12A8 (ENSNVIG00000012695) #36	HEG1 (ENSNVIG00000012751) #37
Canidae	ANCESTRAL SPECIES	35	ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01050000248337	ENSGT00980000201931	ENSGT00940000154831.eb	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.o #30	ENSGT00390000016972.a.a.a.n.b #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Canis_lupus	ANCESTRAL SPECIES	31	ENSGT00390000017679 #7	ENSGT00390000016356.a.a #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01050000248337	ENSGT00980000201931	ENSGT00940000154831.eb	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019.a #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a.o #30	ENSGT00390000016972.a.a.a.n.b #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Dog	MODERN SPECIES	26	PAK2 (ENSCAFG00845030194)	ENSCAFG00845030161 #7	ENSCAFG00845030137 #8	NRROS (ENSCAFG00845030131) #9	FBXO45 (ENSCAFG00845030101) #11	WDR53 (ENSCAFG00845030095) #12	SMCO1 (ENSCAFG00845030074) #13	RNF168 (ENSCAFG00845030062) #15	ENSCAFG00845030053	ENSCAFG00845030045	TM4SF19 (ENSCAFG00845030006) #17	DYNLT2B (ENSCAFG00845029980) #18	PCYT1A (ENSCAFG00845029954) #19	SLC51A (ENSCAFG00845029919) #20	ZDHHC19 (ENSCAFG00845029898) #21	TFRC (ENSCAFG00845029840) #22	TNK2 (ENSCAFG00845029652) #23	ENSCAFG00845029560	ENSCAFG00845029500 #24	ENSCAFG00845029480 #25	RUBCN (ENSCAFG00845029259) #26	FYTTD1 (ENSCAFG00845029129) #27	LRCH3 (ENSCAFG00845028813) #28	IQCG (ENSCAFG00845028574) #29	RPL35A (ENSCAFG00845028539) #30	ENSCAFG00845028330 #32	ENSCAFG00845028148 #33	SNX4 (ENSCAFG00845028061) #34	ZNF148 (ENSCAFG00845027952) #35	SLC12A8 (ENSCAFG00845027740) #36	HEG1 (ENSCAFG00845027629) #37
Dingo	MODERN SPECIES	65	PIGX (ENSCAFG00020003030) #7	CEP19 (ENSCAFG00020003065) #8	NRROS (ENSCAFG00020003068) #9	FBXO45 (ENSCAFG00020003070) #11	WDR53 (ENSCAFG00020003079) #12	SMCO1 (ENSCAFG00020003084) #13	RNF168 (ENSCAFG00020003090) #15	ENSCAFG00020003095	TM4SF19 (ENSCAFG00020003145) #17	ENSCAFG00020003156 #18	PCYT1A (ENSCAFG00020003157) #19	SLC51A (ENSCAFG00020003161) #20	ENSCAFG00020003174	ZDHHC19 (ENSCAFG00020003177) #21	ENSCAFG00020003183	TFRC (ENSCAFG00020003185) #22	TNK2 (ENSCAFG00020003205) #23	ENSCAFG00020003235 #24	ENSCAFG00020003256 #25	ENSCAFG00020003262	FYTTD1 (ENSCAFG00020003266) #27	LRCH3 (ENSCAFG00020003278) #28	IQCG (ENSCAFG00020003353) #29	RPL35A (ENSCAFG00020003355) #30	LMLN (ENSCAFG00020003363) #32	SNX4 (ENSCAFG00020003451) #34	ZNF148 (ENSCAFG00020003457) #35	ENSCAFG00020003525 #37	ENSCAFG00020003535	ITGB5 (ENSCAFG00020003635)	ENSCAFG00020004552
Red fox	MODERN SPECIES	6	PIGZ (ENSVVUG00000008601)	NCBP2 (ENSVVUG00000008595)	SENP5 (ENSVVUG00000008588)	PAK2 (ENSVVUG00000008569)	PIGX (ENSVVUG00000008552) #7	CEP19 (ENSVVUG00000008546) #8	ENSVVUG00000008533 #11	WDR53 (ENSVVUG00000008526) #12	SMCO1 (ENSVVUG00000008520) #13	RNF168 (ENSVVUG00000008509) #15	UBXN7 (ENSVVUG00000008500)	TM4SF19 (ENSVVUG00000008481) #17	PCYT1A (ENSVVUG00000008467) #19	SLC51A (ENSVVUG00000008440) #20	ZDHHC19 (ENSVVUG00000008435) #21	TFRC (ENSVVUG00000008402) #22	TNK2 (ENSVVUG00000008337) #23	ENSVVUG00000008098 #24	MUC20 (ENSVVUG00000008082) #25	RUBCN (ENSVVUG00000008027) #26	FYTTD1 (ENSVVUG00000008003) #27	LRCH3 (ENSVVUG00000007483) #28	IQCG (ENSVVUG00000007451) #29	ENSVVUG00000007448 ##30	ENSVVUG00000007437	LMLN (ENSVVUG00000007417) #32	ENSVVUG00000007413	OSBPL11 (ENSVVUG00000007401) #33	SNX4 (ENSVVUG00000007353) #34	ZNF148 (ENSVVUG00000007287) #35	SLC12A8 (ENSVVUG00000007273) #36
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Equus	ANCESTRAL SPECIES	19	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784.f.a #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000166255	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Donkey	MODERN SPECIES	25	SENP5 (ENSEASG00005006721)	PAK2 (ENSEASG00005006722)	PIGX (ENSEASG00005006724) #7	CEP19 (ENSEASG00005006726) #8	NRROS (ENSEASG00005006728) #9	FBXO45 (ENSEASG00005006729) #11	WDR53 (ENSEASG00005006730) #12	SMCO1 (ENSEASG00005028358) #13	RNF168 (ENSEASG00005037277) #15	ENSEASG00005006734	TM4SF19 (ENSEASG00005006736) #17	ENSEASG00005006738 #18	PCYT1A (ENSEASG00005006739) #19	SLC51A (ENSEASG00005006740) #20	ENSEASG00005006741 #21	TFRC (ENSEASG00005006743) #22	TNK2 (ENSEASG00005006745) #23	ENSEASG00005006753 #24	ENSEASG00005006785 #25	ENSEASG00005006787 #26	ENSEASG00005006793 #27	ENSEASG00005006808	IQCG (ENSEASG00005006818) #29	RPL35A (ENSEASG00005006819) #30	ENSEASG00005006823 #32	ENSEASG00005006834 #33	SNX4 (ENSEASG00005006841) #34	ZNF148 (ENSEASG00005006857) #35	SLC12A8 (ENSEASG00005006860) #36	ENSEASG00005006869 #37	ENSEASG00005006873
Horse	MODERN SPECIES	10	PIGX (ENSECAG00000025031) #7	CEP19 (ENSECAG00000000455) #8	NRROS (ENSECAG00000000470) #9	WDR53 (ENSECAG00000006925) #12	FBXO45 (ENSECAG00000006613) #11	SMCO1 (ENSECAG00000006971) #13	RNF168 (ENSECAG00000007003) #15	UBXN7 (ENSECAG00000008453)	TM4SF19 (ENSECAG00000014455) #17	ENSECAG00000015913 #18	PCYT1A (ENSECAG00000017477) #19	SLC51A (ENSECAG00000023114) #20	ENSECAG00000016181 #21	ENSECAG00000037418	ENSECAG00000028531 #21	TFRC (ENSECAG00000024267) #22	TNK2 (ENSECAG00000001441) #23	ENSECAG00000040667 #24	MUC20 (ENSECAG00000010018) #25	RUBCN (ENSECAG00000010420) #26	FYTTD1 (ENSECAG00000019051) #27	LRCH3 (ENSECAG00000023846) #28	IQCG (ENSECAG00000008619) #29	LMLN (ENSECAG00000012354) #32	OSBPL11 (ENSECAG00000020840) #33	SNX4 (ENSECAG00000008857) #34	ZNF148 (ENSECAG00000013557) #35	SLC12A8 (ENSECAG00000020175) #36	HEG1 (ENSECAG00000001870) #37	ENSECAG00000006569	ITGB5 (ENSECAG00000007589)
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010015455	PAK2 (ENSRFEG00010015395)	PIGX (ENSRFEG00010015297) #7	CEP19 (ENSRFEG00010015278) #8	NRROS (ENSRFEG00010015215) #9	FBXO45 (ENSRFEG00010015134) #11	WDR53 (ENSRFEG00010015056) #12	SMCO1 (ENSRFEG00010015018) #13	RNF168 (ENSRFEG00010014960) #15	ENSRFEG00010014894	TM4SF19 (ENSRFEG00010014774) #17	DYNLT2B (ENSRFEG00010014713) #18	PCYT1A (ENSRFEG00010014639) #19	SLC51A (ENSRFEG00010014592) #20	ZDHHC19 (ENSRFEG00010014441) #21	TFRC (ENSRFEG00010014335) #22	TNK2 (ENSRFEG00010014193) #23	ENSRFEG00010014114	ENSRFEG00010013331 #24	ENSRFEG00010013204 #25	RUBCN (ENSRFEG00010012769) #26	ENSRFEG00010012486 #27	LRCH3 (ENSRFEG00010012261) #28	ENSRFEG00010012213 #29	ENSRFEG00010012130 #30	LMLN (ENSRFEG00010011979) #32	OSBPL11 (ENSRFEG00010011920) #33	SNX4 (ENSRFEG00010011851) #34	ZNF148 (ENSRFEG00010011798) #35	ENSRFEG00010011777	SLC12A8 (ENSRFEG00010011701) #36
Microbat	MODERN SPECIES	1042					PIGX (ENSMLUG00000023834) #7	CEP19 (ENSMLUG00000001711) #8	NRROS (ENSMLUG00000001708) #9	FBXO45 (ENSMLUG00000011585) #11	SMCO1 (ENSMLUG00000028046) #13	RNF168 (ENSMLUG00000012066) #15	UBXN7 (ENSMLUG00000010710) #16	TM4SF19 (ENSMLUG00000029500) #17	PCYT1A (ENSMLUG00000009084) #19	SLC51A (ENSMLUG00000006580) #20	ZDHHC19 (ENSMLUG00000009047) #21	TFRC (ENSMLUG00000000242) #22	TNK2 (ENSMLUG00000017526) #23	ENSMLUG00000016477 #24	ENSMLUG00000013495	ENSMLUG00000004654 #25	ENSMLUG00000006598 #26	FYTTD1 (ENSMLUG00000005630) #27	LRCH3 (ENSMLUG00000010702) #28	IQCG (ENSMLUG00000010744) #29	RPL35A (ENSMLUG00000010771) #30	LMLN (ENSMLUG00000010788) #32	ENSMLUG00000027927	OSBPL11 (ENSMLUG00000005512) #33	SNX4 (ENSMLUG00000026891) #34	ZNF148 (ENSMLUG00000007681) #35	SLC12A8 (ENSMLUG00000024105) #36
Megabat	MODERN SPECIES	2476																TFRC (ENSPVAG00000009148) #22
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Suina	ANCESTRAL SPECIES	1	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Pig	MODERN SPECIES	4	SENP5 (ENSSSCG00000011841)	PAK2 (ENSSSCG00000011843)	PIGX (ENSSSCG00000026934) #7	CEP19 (ENSSSCG00000057729) #8	NRROS (ENSSSCG00000023527) #9	FBXO45 (ENSSSCG00000033030) #11	WDR53 (ENSSSCG00000036536) #12	SMCO1 (ENSSSCG00000031614) #13	ENSSSCG00000034711 #15	ENSSSCG00000021380	TM4SF19 (ENSSSCG00000028376) #17	DYNLT2B (ENSSSCG00000056643) #18	PCYT1A (ENSSSCG00000011845) #19	SLC51A (ENSSSCG00000011846) #20	ZDHHC19 (ENSSSCG00000011847) #21	TFRC (ENSSSCG00000011848) #22	TNK2 (ENSSSCG00000011849) #23	ENSSSCG00000034823	ENSSSCG00000036416	ENSSSCG00000011850 #24	ENSSSCG00000011851 #25	RUBCN (ENSSSCG00000011853) #26	FYTTD1 (ENSSSCG00000027139) #27	LRCH3 (ENSSSCG00000011854) #28	ENSSSCG00000038638	IQCG (ENSSSCG00000011855) #29	RPL35A (ENSSSCG00000040273) #30	LMLN (ENSSSCG00000011857) #32	OSBPL11 (ENSSSCG00000026753) #33	SNX4 (ENSSSCG00000036828) #34	ZNF148 (ENSSSCG00000011858) #35
Chacoan peccary	MODERN SPECIES	944	ENSCWAG00000020230	PAK2 (ENSCWAG00000020240)	PIGX (ENSCWAG00000020270) #7	CEP19 (ENSCWAG00000020339) #8	NRROS (ENSCWAG00000020347) #9	FBXO45 (ENSCWAG00000020359) #11	WDR53 (ENSCWAG00000020368) #12	SMCO1 (ENSCWAG00000020378) #13	RNF168 (ENSCWAG00000020386) #15	ENSCWAG00000020401	TM4SF19 (ENSCWAG00000020419) #17	DYNLT2B (ENSCWAG00000020434) #18	PCYT1A (ENSCWAG00000020448) #19	SLC51A (ENSCWAG00000020479) #20	ZDHHC19 (ENSCWAG00000020493) #21	TFRC (ENSCWAG00000020515) #22	TNK2 (ENSCWAG00000020547) #23	ENSCWAG00000020617 #24	ENSCWAG00000020725 #25	RUBCN (ENSCWAG00000020758) #26	FYTTD1 (ENSCWAG00000020803) #27	LRCH3 (ENSCWAG00000020842) #28	IQCG (ENSCWAG00000020967) #29	RPL35A (ENSCWAG00000020990) #30	LMLN (ENSCWAG00000021005) #32	OSBPL11 (ENSCWAG00000021058) #33	SNX4 (ENSCWAG00000021074) #34	ZNF148 (ENSCWAG00000021091) #35	SLC12A8 (ENSCWAG00000021107) #36	ENSCWAG00000021122 #37	ENSCWAG00000021131
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Cetacea	ANCESTRAL SPECIES	10	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01050000248337	ENSGT00980000201931	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000159865	ENSGT00950000182988.a.a.p	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406.z #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Dolphin	MODERN SPECIES	1701						FBXO45 (ENSTTRG00000012712) #11	WDR53 (ENSTTRG00000012711) #12	SMCO1 (ENSTTRG00000012710) #13	RNF168 (ENSTTRG00000012708) #15	UBXN7 (ENSTTRG00000012704) #16	TM4SF19 (ENSTTRG00000012701) #17	DYNLT2B (ENSTTRG00000012700) #18	PCYT1A (ENSTTRG00000012694) #19	SLC51A (ENSTTRG00000012683) #20	ZDHHC19 (ENSTTRG00000012678) #21	TFRC (ENSTTRG00000012668) #22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00950000182988.a.a.p	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00390000010054.a.k.a	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00390000007701.p	ENSGT00940000157406.z #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Vaquita	MODERN SPECIES	15	ENSPSNG00000018612	PIGX (ENSPSNG00000018666) #7	CEP19 (ENSPSNG00000018740) #8	NRROS (ENSPSNG00000018758) #9	FBXO45 (ENSPSNG00000018794) #11	WDR53 (ENSPSNG00000018822) #12	SMCO1 (ENSPSNG00000018861) #13	RNF168 (ENSPSNG00000018909) #15	UBXN7 (ENSPSNG00000018959) #16	TM4SF19 (ENSPSNG00000019005) #17	DYNLT2B (ENSPSNG00000019058) #18	ENSPSNG00000019098	PCYT1A (ENSPSNG00000019133) #19	SLC51A (ENSPSNG00000019185) #20	ZDHHC19 (ENSPSNG00000019223) #21	TFRC (ENSPSNG00000019294) #22	TNK2 (ENSPSNG00000019446) #23	ENSPSNG00000019952	ENSPSNG00000020017 #24	ENSPSNG00000020275 #25	RUBCN (ENSPSNG00000020363) #26	FYTTD1 (ENSPSNG00000020444) #27	LRCH3 (ENSPSNG00000020602) #28	IQCG (ENSPSNG00000020935) #29	RPL35A (ENSPSNG00000021056) #30	LMLN (ENSPSNG00000021123) #32	OSBPL11 (ENSPSNG00000021329) #33	SNX4 (ENSPSNG00000021354) #34	ENSPSNG00000021375	ENSPSNG00000021386	ZNF148 (ENSPSNG00000021408) #35
Monodontidae	ANCESTRAL SPECIES	11	ENSGT00950000182988.a.a.p	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00390000010054.a.k.a	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00530000063881.a.a.p	ENSGT00930000151029 #34	ENSGT00390000007701.p	ENSGT00940000157406.z #35	ENSGT00940000160130 #36
Beluga whale	MODERN SPECIES	111	SENP5 (ENSDLEG00000012243)	ENSDLEG00000012210	PIGX (ENSDLEG00000012097) #7	CEP19 (ENSDLEG00000012083) #8	NRROS (ENSDLEG00000012073) #9	FBXO45 (ENSDLEG00000012070) #11	WDR53 (ENSDLEG00000012066) #12	SMCO1 (ENSDLEG00000012054) #13	RNF168 (ENSDLEG00000012037) #15	UBXN7 (ENSDLEG00000012014) #16	TM4SF19 (ENSDLEG00000011991) #17	ENSDLEG00000011976	PCYT1A (ENSDLEG00000011960) #19	SLC51A (ENSDLEG00000011921) #20	ZDHHC19 (ENSDLEG00000019292) #21	TFRC (ENSDLEG00000019274) #22	TNK2 (ENSDLEG00000019250) #23	ENSDLEG00000019190 #24	ENSDLEG00000019180 #25	RUBCN (ENSDLEG00000019159) #26	FYTTD1 (ENSDLEG00000019147) #27	LRCH3 (ENSDLEG00000019094) #28	ENSDLEG00000019082	IQCG (ENSDLEG00000019067) #29	ENSDLEG00000019065 #30	LMLN (ENSDLEG00000019011) #32	OSBPL11 (ENSDLEG00000018984) #33	ENSDLEG00000018976	SNX4 (ENSDLEG00000018885) #34	ENSDLEG00000018867	ZNF148 (ENSDLEG00000018840) #35
Narwhal	MODERN SPECIES	297	CEP19 (ENSMMNG00015008137) #8	NRROS (ENSMMNG00015008129) #9	FBXO45 (ENSMMNG00015008115) #11	WDR53 (ENSMMNG00015008103) #12	SMCO1 (ENSMMNG00015008087) #13	RNF168 (ENSMMNG00015008071) #15	ENSMMNG00015008046	ENSMMNG00015008026	TM4SF19 (ENSMMNG00015008006) #17	DYNLT2B (ENSMMNG00015007916) #18	ENSMMNG00015007899	ENSMMNG00015007887	PCYT1A (ENSMMNG00015007854) #19	SLC51A (ENSMMNG00015007821) #20	ZDHHC19 (ENSMMNG00015007797) #21	TFRC (ENSMMNG00015007768) #22	TNK2 (ENSMMNG00015007694) #23	ENSMMNG00015007557 #24	ENSMMNG00015007484 #25	RUBCN (ENSMMNG00015007368) #26	FYTTD1 (ENSMMNG00015007309) #27	LRCH3 (ENSMMNG00015007112) #28	IQCG (ENSMMNG00015007024) #29	ENSMMNG00015007004 #30	LMLN (ENSMMNG00015006895) #32	OSBPL11 (ENSMMNG00015006827) #33	ENSMMNG00015006812	SNX4 (ENSMMNG00015006775) #34	ENSMMNG00015006757	ZNF148 (ENSMMNG00015006739) #35	SLC12A8 (ENSMMNG00015006712) #36
Sperm whale	MODERN SPECIES		PIGX (ENSPCTG00005003544) #7	ENSPCTG00005003593	CEP19 (ENSPCTG00005003603) #8	ENSPCTG00005003608	NRROS (ENSPCTG00005003615) #9	FBXO45 (ENSPCTG00005003622) #11	WDR53 (ENSPCTG00005003642) #12	SMCO1 (ENSPCTG00005003655) #13	ENSPCTG00005003671 #15	UBXN7 (ENSPCTG00005003692) #16	TM4SF19 (ENSPCTG00005003712) #17	TCTEX1D2 (ENSPCTG00005003728) #18	PCYT1A (ENSPCTG00005003743) #19	SLC51A (ENSPCTG00005003756) #20	ZDHHC19 (ENSPCTG00005003766) #21	TFRC (ENSPCTG00005003787) #22	TNK2 (ENSPCTG00005003838) #23	ENSPCTG00005003902 #24	RUBCN (ENSPCTG00005003992) #26	FYTTD1 (ENSPCTG00005004043) #27	LRCH3 (ENSPCTG00005004103) #28	IQCG (ENSPCTG00005004542) #29	ENSPCTG00005004591	RPL35A (ENSPCTG00005004674) #32	OSBPL11 (ENSPCTG00005004841) #33	SNX4 (ENSPCTG00005004955) #34	ENSPCTG00005005089	ZNF148 (ENSPCTG00005005129) #35	HEG1 (ENSPCTG00005005184) #37	ENSPCTG00005005322	UMPS (ENSPCTG00005005735)
Blue whale	MODERN SPECIES	15	ENSBMSG00010004463	PIGX (ENSBMSG00010004474) #7	CEP19 (ENSBMSG00010004483) #8	NRROS (ENSBMSG00010004496) #9	FBXO45 (ENSBMSG00010004510) #11	WDR53 (ENSBMSG00010004521) #12	SMCO1 (ENSBMSG00010004534) #13	RNF168 (ENSBMSG00010004550) #15	ENSBMSG00010004565 #16	TM4SF19 (ENSBMSG00010004586) #17	DYNLT2B (ENSBMSG00010004602) #18	PCYT1A (ENSBMSG00010004622) #19	SLC51A (ENSBMSG00010004639) #20	ENSBMSG00010004646	ZDHHC19 (ENSBMSG00010004656) #21	TFRC (ENSBMSG00010004675) #22	TNK2 (ENSBMSG00010004715) #23	ENSBMSG00010004848 #24	ENSBMSG00010004885 #25	RUBCN (ENSBMSG00010004897) #26	FYTTD1 (ENSBMSG00010004909) #27	LRCH3 (ENSBMSG00010004927) #28	IQCG (ENSBMSG00010004938) #29	ENSBMSG00010004945	ENSBMSG00010004947 #30	LMLN (ENSBMSG00010004958) #32	ENSBMSG00010004965	OSBPL11 (ENSBMSG00010004974) #33	SNX4 (ENSBMSG00010004980) #34	ZNF148 (ENSBMSG00010004984) #35	SLC12A8 (ENSBMSG00010004989) #36
Pecora	ANCESTRAL SPECIES	8	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT00940000164959.g.a.a.b	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Yarkand deer	MODERN SPECIES	10	PIGX (ENSCHYG00000005369) #7	CEP19 (ENSCHYG00000005308) #8	NRROS (ENSCHYG00000005297) #9	ENSCHYG00000005273	ENSCHYG00000005251 #11	WDR53 (ENSCHYG00000005214) #12	SMCO1 (ENSCHYG00000005174) #13	RNF168 (ENSCHYG00000005135) #15	UBXN7 (ENSCHYG00000004883) #16	TM4SF19 (ENSCHYG00000004526) #17	DYNLT2B (ENSCHYG00000024565) #18	PCYT1A (ENSCHYG00000024498) #19	SLC51A (ENSCHYG00000024454) #20	ZDHHC19 (ENSCHYG00000024435) #21	ENSCHYG00000024423	TFRC (ENSCHYG00000024290) #22	TNK2 (ENSCHYG00000023873) #23	ENSCHYG00000023811	ENSCHYG00000023392 #24	ENSCHYG00000023343 #25	RUBCN (ENSCHYG00000022813) #26	FYTTD1 (ENSCHYG00000022704) #27	LRCH3 (ENSCHYG00000019292) #28	RPL35A (ENSCHYG00000018914) #30	IQCG (ENSCHYG00000018484) #29	LMLN (ENSCHYG00000017909) #32	OSBPL11 (ENSCHYG00000017599) #33	SNX4 (ENSCHYG00000017444) #34	ENSCHYG00000017397	ZNF148 (ENSCHYG00000017256) #35	SLC12A8 (ENSCHYG00000017089) #36
Percora_a	ANCESTRAL SPECIES	7	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT00940000164959.g.a.a.b	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00960000191049	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00960000191049	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Bovinae	ANCESTRAL SPECIES	6	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000155143.tb.b	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Bos	ANCESTRAL SPECIES	7	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01100000263480.a.a.a.b.b.a	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000155143.tb.b	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Bos_a	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01100000263480.a.a.a.b.b.a	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000155143.tb.b	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Wild yak	MODERN SPECIES	941	ENSBMUG00000021508	PAK2 (ENSBMUG00000021499)	PIGX (ENSBMUG00000021454) #7	CEP19 (ENSBMUG00000021416) #8	ENSBMUG00000021393	NRROS (ENSBMUG00000021382) #9	FBXO45 (ENSBMUG00000021374) #11	WDR53 (ENSBMUG00000021347) #12	SMCO1 (ENSBMUG00000021331) #13	RNF168 (ENSBMUG00000021322) #15	UBXN7 (ENSBMUG00000021308) #16	DYNLT2B (ENSBMUG00000021295) #18	PCYT1A (ENSBMUG00000021254) #19	SLC51A (ENSBMUG00000021225) #20	ZDHHC19 (ENSBMUG00000021214) #21	TFRC (ENSBMUG00000021197) #22	TNK2 (ENSBMUG00000021177) #23	ENSBMUG00000021092 #24	ENSBMUG00000021029 #25
Domestic yak	MODERN SPECIES		ENSBGRG00000019060	PIGX (ENSBGRG00000018965) #7	CEP19 (ENSBGRG00000018942) #8	NRROS (ENSBGRG00000018922) #9	FBXO45 (ENSBGRG00000018893) #11	WDR53 (ENSBGRG00000018865) #12	SMCO1 (ENSBGRG00000018804) #13	ENSBGRG00000018793	RNF168 (ENSBGRG00000018769) #15	TM4SF19 (ENSBGRG00000018683) #17	ENSBGRG00000018600 #18	PCYT1A (ENSBGRG00000018458) #19	SLC51A (ENSBGRG00000018377) #20	ZDHHC19 (ENSBGRG00000018277) #21	UBXN7 (ENSBGRG00000018000) #16	TFRC (ENSBGRG00000017868) #22	TNK2 (ENSBGRG00000017484) #23	ENSBGRG00000016748 #24	ENSBGRG00000016657 #25	RUBCN (ENSBGRG00000015738) #26	FYTTD1 (ENSBGRG00000015311) #27	LRCH3 (ENSBGRG00000013795) #28	IQCG (ENSBGRG00000013579) #29	LMLN (ENSBGRG00000013101) #32	ENSBGRG00000013032	ENSBGRG00000013004	OSBPL11 (ENSBGRG00000012716) #33	SNX4 (ENSBGRG00000012306) #34	ENSBGRG00000012268	ENSBGRG00000012254	ZNF148 (ENSBGRG00000012130) #35
Bos_b	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01100000263480.a.a.a.b.b.a	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000155143.tb.b	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Cow	MODERN SPECIES		PAK2 (ENSBTAG00000047856)	PIGX (ENSBTAG00000048195) #7	ENSBTAG00000049165	CEP19 (ENSBTAG00000013192) #8	NRROS (ENSBTAG00000009614) #9	FBXO45 (ENSBTAG00000006388) #11	WDR53 (ENSBTAG00000014660) #12	SMCO1 (ENSBTAG00000013319) #13	RNF168 (ENSBTAG00000013317) #15	UBXN7 (ENSBTAG00000007577) #16	TM4SF19 (ENSBTAG00000040161) #17	DYNLT2B (ENSBTAG00000032684) #18	PCYT1A (ENSBTAG00000016979) #19	SLC51A (ENSBTAG00000012347) #20	ZDHHC19 (ENSBTAG00000021515) #21	TFRC (ENSBTAG00000032719) #22	TNK2 (ENSBTAG00000021364) #23	MUC4 (ENSBTAG00000014721) #24	MUC20 (ENSBTAG00000032819) #25	RUBCN (ENSBTAG00000001890) #26	FYTTD1 (ENSBTAG00000014874) #27	LRCH3 (ENSBTAG00000032839) #28	IQCG (ENSBTAG00000018025) #29	RPL35A (ENSBTAG00000014208) #30	LMLN (ENSBTAG00000044172) #32	ENSBTAG00000003383	OSBPL11 (ENSBTAG00000006471) #33	SNX4 (ENSBTAG00000011383) #34	ZNF148 (ENSBTAG00000050482) #35	SLC12A8 (ENSBTAG00000000496) #36	HEG1 (ENSBTAG00000021396) #37
Hybrid Bos Indicus	MODERN SPECIES		PIGX (ENSBIXG00005005074) #7	CEP19 (ENSBIXG00005002172) #8	NRROS (ENSBIXG00005005082) #9	FBXO45 (ENSBIXG00005028962) #11	WDR53 (ENSBIXG00005002120) #12	SMCO1 (ENSBIXG00005002095) #13	ENSBIXG00005005099	RNF168 (ENSBIXG00005002067) #15	UBXN7 (ENSBIXG00005002013) #16	TM4SF19 (ENSBIXG00005001994) #17	ENSBIXG00005029076 #18	ENSBIXG00005001961	PCYT1A (ENSBIXG00005029100) #19	SLC51A (ENSBIXG00005029116) #20	ENSBIXG00005005170	TFRC (ENSBIXG00005001801) #22	ENSBIXG00005001750	TNK2 (ENSBIXG00005005258) #23	ENSBIXG00005001552 #24	ENSBIXG00005008716 #25	RUBCN (ENSBIXG00005000262) #26	FYTTD1 (ENSBIXG00005008813) #27	LRCH3 (ENSBIXG00005008984) #28	IQCG (ENSBIXG00005009058) #29	LMLN (ENSBIXG00005009194) #32	ENSBIXG00005009227	ENSBIXG00005009236	OSBPL11 (ENSBIXG00005000438) #33	SNX4 (ENSBIXG00005009284) #34	ENSBIXG00005000461	ENSBIXG00005009299
American bison	MODERN SPECIES	2970	PAK2 (ENSBBBG00000010680)	ENSBBBG00000001871	PIGX (ENSBBBG00000010727) #7	CEP19 (ENSBBBG00000010745) #8	NRROS (ENSBBBG00000010748) #9	FBXO45 (ENSBBBG00000010751) #11	WDR53 (ENSBBBG00000007301) #12	SMCO1 (ENSBBBG00000010759) #13	RNF168 (ENSBBBG00000010765) #15	UBXN7 (ENSBBBG00000010773) #16	TM4SF19 (ENSBBBG00000010782) #17	DYNLT2B (ENSBBBG00000010788) #18	PCYT1A (ENSBBBG00000010806) #19	SLC51A (ENSBBBG00000010818) #20	ZDHHC19 (ENSBBBG00000010824) #21	TFRC (ENSBBBG00000010858) #22	TNK2 (ENSBBBG00000010889) #23	ENSBBBG00000010940 #24	ENSBBBG00000010945 #25	RUBCN (ENSBBBG00000010991) #26	FYTTD1 (ENSBBBG00000011006) #27	LRCH3 (ENSBBBG00000011105) #28	IQCG (ENSBBBG00000011126) #29	RPL35A (ENSBBBG00000007879) #30	LMLN (ENSBBBG00000011186) #32	ENSBBBG00000011195	OSBPL11 (ENSBBBG00000011205) #33	SNX4 (ENSBBBG00000011216) #34	ZNF148 (ENSBBBG00000002048) #35	SLC12A8 (ENSBBBG00000009084) #36	ENSBBBG00000011277 #37
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00960000191049	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807.cb.a #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Goat	MODERN SPECIES		ENSCHIG00000025352	PIGX (ENSCHIG00000014316) #7	CEP19 (ENSCHIG00000023528) #8	NRROS (ENSCHIG00000011433) #9	ENSCHIG00000016877	FBXO45 (ENSCHIG00000026762) #11	WDR53 (ENSCHIG00000009644) #12	SMCO1 (ENSCHIG00000016839) #13	RNF168 (ENSCHIG00000023259) #15	UBXN7 (ENSCHIG00000006623) #16	TM4SF19 (ENSCHIG00000016343) #17	DYNLT2B (ENSCHIG00000026495) #18	PCYT1A (ENSCHIG00000019026) #19	SLC51A (ENSCHIG00000025712) #20	ZDHHC19 (ENSCHIG00000023955) #21	TFRC (ENSCHIG00000027016) #22	TNK2 (ENSCHIG00000012496) #23	ENSCHIG00000013663 #24	ENSCHIG00000019529 #25	RUBCN (ENSCHIG00000016903) #26	ENSCHIG00000021253 #27	LRCH3 (ENSCHIG00000025525) #28	IQCG (ENSCHIG00000010981) #29	LMLN (ENSCHIG00000017400) #32	OSBPL11 (ENSCHIG00000025905) #33	SNX4 (ENSCHIG00000013494) #34	ZNF148 (ENSCHIG00000017965) #35	SLC12A8 (ENSCHIG00000022664) #36	ENSCHIG00000004756 #37	ENSCHIG00000015139 #37	ENSCHIG00000021179
Rambouillet Sheep	MODERN SPECIES		SENP5 (ENSOARG00020002311)	PAK2 (ENSOARG00020002289)	CEP19 (ENSOARG00020002277) #8	NRROS (ENSOARG00020002263) #9	PIGX (ENSOARG00020002216) #7	FBXO45 (ENSOARG00020002185) #11	WDR53 (ENSOARG00020002176) #12	SMCO1 (ENSOARG00020002161) #13	RNF168 (ENSOARG00020002141) #15	UBXN7 (ENSOARG00020002099) #16	TM4SF19 (ENSOARG00020002057) #17	DYNLT2B (ENSOARG00020002040) #18	PCYT1A (ENSOARG00020002019) #19	SLC51A (ENSOARG00020002003) #20	ZDHHC19 (ENSOARG00020001984) #21	TFRC (ENSOARG00020001942) #22	ENSOARG00020001926	TNK2 (ENSOARG00020001863) #23	ENSOARG00020001840 #25	RUBCN (ENSOARG00020001781) #26	ENSOARG00020001756 #27	LRCH3 (ENSOARG00020001532) #28	IQCG (ENSOARG00020001449) #29	ENSOARG00020001437 #30	LMLN (ENSOARG00020001272) #32	ENSOARG00020001218	OSBPL11 (ENSOARG00020001185) #33	SNX4 (ENSOARG00020001168) #34	ZNF148 (ENSOARG00020001132) #35	SLC12A8 (ENSOARG00020001097) #36	ENSOARG00020001083 #37
Siberian musk deer	MODERN SPECIES	138	ENSMMSG00000021532	PIGX (ENSMMSG00000021454) #7	CEP19 (ENSMMSG00000021429) #8	NRROS (ENSMMSG00000021408) #9	ENSMMSG00000021381	FBXO45 (ENSMMSG00000021349) #11	WDR53 (ENSMMSG00000021320) #12	SMCO1 (ENSMMSG00000021286) #13	RNF168 (ENSMMSG00000021257) #15	UBXN7 (ENSMMSG00000021222) #16	TM4SF19 (ENSMMSG00000021179) #17	DYNLT2B (ENSMMSG00000021149) #18	PCYT1A (ENSMMSG00000021110) #19	SLC51A (ENSMMSG00000021053) #20	ZDHHC19 (ENSMMSG00000020999) #21	TFRC (ENSMMSG00000020923) #22	ENSMMSG00000020893	TNK2 (ENSMMSG00000020630) #23	ENSMMSG00000020373 #24	ENSMMSG00000020325 #25	ENSMMSG00000020303	RUBCN (ENSMMSG00000020169) #26	ENSMMSG00000020140 #27	ENSMMSG00000020118	LRCH3 (ENSMMSG00000019555) #28	IQCG (ENSMMSG00000019458) #29	ENSMMSG00000019426 #30	LMLN (ENSMMSG00000019182) #32	OSBPL11 (ENSMMSG00000019129) #33	ENSMMSG00000019084	SNX4 (ENSMMSG00000019042) #34
Camelidae	ANCESTRAL SPECIES		ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a.d #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00960000191049	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Arabian camel	MODERN SPECIES		NCBP2 (ENSCDRG00005019755)	SENP5 (ENSCDRG00005019773)	PAK2 (ENSCDRG00005019813)	PIGX (ENSCDRG00005019832) #7	ENSCDRG00005019853 #8	NRROS (ENSCDRG00005019869) #9	WDR53 (ENSCDRG00005019884) #12	SMCO1 (ENSCDRG00005019896) #13	RNF168 (ENSCDRG00005019907) #15	ENSCDRG00005019920	TM4SF19 (ENSCDRG00005019950) #17	DYNLT2B (ENSCDRG00005019975) #18	PCYT1A (ENSCDRG00005019996) #19	SLC51A (ENSCDRG00005020009) #20	ZDHHC19 (ENSCDRG00005020031) #21	TFRC (ENSCDRG00005020067) #22	TNK2 (ENSCDRG00005020108) #23	ENSCDRG00005020250	ENSCDRG00005020261 #24	ENSCDRG00005020316 #25	RUBCN (ENSCDRG00005020386) #26	FYTTD1 (ENSCDRG00005020474) #27	LRCH3 (ENSCDRG00005020528) #28	IQCG (ENSCDRG00005020682) #29	RPL35A (ENSCDRG00005020695) #30	LMLN (ENSCDRG00005020718) #32	OSBPL11 (ENSCDRG00005020837) #33	SNX4 (ENSCDRG00005020865) #34	ZNF148 (ENSCDRG00005020903) #35	SLC12A8 (ENSCDRG00005020915) #36	HEG1 (ENSCDRG00005020932) #37
Alpaca	MODERN SPECIES	2044							FBXO45 (ENSVPAG00000010024) #11	WDR53 (ENSVPAG00000010023) #12	SMCO1 (ENSVPAG00000010022) #13	RNF168 (ENSVPAG00000010021) #15	UBXN7 (ENSVPAG00000010020) #16	DYNLT2B (ENSVPAG00000010019) #18	PCYT1A (ENSVPAG00000010017) #19	SLC51A (ENSVPAG00000010016) #20	ZDHHC19 (ENSVPAG00000010015) #21	TFRC (ENSVPAG00000010014) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.a #22
Hedgehog	MODERN SPECIES	6779																ENSEEUG00000015456 #22
Common shrew	MODERN SPECIES	5188																TFRC (ENSSARG00000007409) #22
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.b.j ##30	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35
Primates	ANCESTRAL SPECIES	1	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Coquerels sifaka	MODERN SPECIES	51	PAK2 (ENSPCOG00000022443)	PIGX (ENSPCOG00000027255) #7	CEP19 (ENSPCOG00000024840) #8	ENSPCOG00000019454	NRROS (ENSPCOG00000019345) #9	FBXO45 (ENSPCOG00000009213) #11	WDR53 (ENSPCOG00000013495) #12	SMCO1 (ENSPCOG00000025215) #13	ENSPCOG00000009943 #15	ENSPCOG00000014254	TM4SF19 (ENSPCOG00000009068) #17	DYNLT2B (ENSPCOG00000003635) #18	PCYT1A (ENSPCOG00000028111) #19	SLC51A (ENSPCOG00000022738) #20	ZDHHC19 (ENSPCOG00000023962) #21	TFRC (ENSPCOG00000025851) #22	TNK2 (ENSPCOG00000023900) #23	ENSPCOG00000001827 #24	ENSPCOG00000014592 #25	RUBCN (ENSPCOG00000024288) #26	FYTTD1 (ENSPCOG00000024162) #27	LRCH3 (ENSPCOG00000014044) #28	IQCG (ENSPCOG00000019036) #29	RPL35A (ENSPCOG00000017629) #30	LMLN (ENSPCOG00000022523) #32	OSBPL11 (ENSPCOG00000014785) #33	SNX4 (ENSPCOG00000023259) #34	ZNF148 (ENSPCOG00000027603) #35	SLC12A8 (ENSPCOG00000013321) #36	HEG1 (ENSPCOG00000022823) #37	ENSPCOG00000012933
Greater bamboo lemur	MODERN SPECIES	216	PIGX (ENSPSMG00000007282) #7	CEP19 (ENSPSMG00000007213) #8	ENSPSMG00000007204	NRROS (ENSPSMG00000007194) #9	FBXO45 (ENSPSMG00000007182) #11	ENSPSMG00000007173 #12	ENSPSMG00000007163	SMCO1 (ENSPSMG00000007154) #13	RNF168 (ENSPSMG00000007144) #15	ENSPSMG00000007134	TM4SF19 (ENSPSMG00000007094) #17	DYNLT2B (ENSPSMG00000007079) #18	PCYT1A (ENSPSMG00000007066) #19	SLC51A (ENSPSMG00000007026) #20	ZDHHC19 (ENSPSMG00000007013) #21	TFRC (ENSPSMG00000006966) #22	TNK2 (ENSPSMG00000006894) #23	ENSPSMG00000006864 #24	ENSPSMG00000006831	ENSPSMG00000006830 #25	RUBCN (ENSPSMG00000006816) #26	FYTTD1 (ENSPSMG00000006766) #27	LRCH3 (ENSPSMG00000006748) #28	ENSPSMG00000006689	IQCG (ENSPSMG00000006678) #29	RPL35A (ENSPSMG00000006665) #30	LMLN (ENSPSMG00000006581) #32	OSBPL11 (ENSPSMG00000006507) #33	SNX4 (ENSPSMG00000006484) #34
Mouse lemur	MODERN SPECIES		PIGX (ENSMICG00000049435) #7	CEP19 (ENSMICG00000049559) #8	NRROS (ENSMICG00000049545) #9	FBXO45 (ENSMICG00000049017) #11	WDR53 (ENSMICG00000049305) #12	SMCO1 (ENSMICG00000048879) #13	RNF168 (ENSMICG00000049458) #15	ENSMICG00000049204	ENSMICG00000049268	TM4SF19 (ENSMICG00000048953) #17	DYNLT2B (ENSMICG00000049156) #18	ENSMICG00000049044 #19	SLC51A (ENSMICG00000049569) #20	ZDHHC19 (ENSMICG00000049177) #21	ENSMICG00000049408	TFRC (ENSMICG00000048390) #22	TNK2 (ENSMICG00000049104) #23	ENSMICG00000049552 #24	ENSMICG00000048627 #25	ENSMICG00000049510 #26	FYTTD1 (ENSMICG00000049152) #27	LRCH3 (ENSMICG00000049503) #28	IQCG (ENSMICG00000049263) #29	RPL35A (ENSMICG00000048983) #30	LMLN (ENSMICG00000049402) #32	ENSMICG00000049573	ENSMICG00000049464	OSBPL11 (ENSMICG00000049504) #33	SNX4 (ENSMICG00000049026) #34	ZNF148 (ENSMICG00000048869) #35	SLC12A8 (ENSMICG00000049518) #36
Bushbaby	MODERN SPECIES	175	SENP5 (ENSOGAG00000005007)	PAK2 (ENSOGAG00000005005)	CEP19 (ENSOGAG00000014397) #8	NRROS (ENSOGAG00000011241) #9	FBXO45 (ENSOGAG00000033173) #11	WDR53 (ENSOGAG00000011240) #12	SMCO1 (ENSOGAG00000032688) #13	RNF168 (ENSOGAG00000001195) #15	ENSOGAG00000016173	TM4SF19 (ENSOGAG00000033401) #17	DYNLT2B (ENSOGAG00000024532) #18	PCYT1A (ENSOGAG00000001596) #19	SLC51A (ENSOGAG00000001594) #20	ZDHHC19 (ENSOGAG00000001590) #21	ENSOGAG00000027175	TFRC (ENSOGAG00000015537) #22
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Tarsier	MODERN SPECIES	5517		ENSTSYG00000031460 #15	SMCO1 (ENSTSYG00000006826) #13	WDR53 (ENSTSYG00000008820) #12	FBXO45 (ENSTSYG00000034245) #11	NRROS (ENSTSYG00000000179) #9	CEP19 (ENSTSYG00000001744) #8	PIGX (ENSTSYG00000001748) #7	PAK2 (ENSTSYG00000011819)	UBXN7 (ENSTSYG00000005674)	TM4SF19 (ENSTSYG00000006189) #17	TCTEX1D2 (ENSTSYG00000033500) #18	PCYT1A (ENSTSYG00000013058) #19	SLC51A (ENSTSYG00000013057) #20	ZDHHC19 (ENSTSYG00000030253) #21	TFRC (ENSTSYG00000000914) #22
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000160407	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276.ib.e.a	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Cebidae	ANCESTRAL SPECIES	22	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000160407	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276.ib.e.a	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000160407	ENSGT00940000158548	ENSGT00940000160089	ENSGT00940000156360	ENSGT00530000063629.b	ENSGT00390000000596	ENSGT00940000154276.ib.e.a	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Capuchin	MODERN SPECIES	129	VIPR1 (ENSCCAG00000033283)	SEC22C (ENSCCAG00000021135)	ENSCCAG00000036916	NKTR (ENSCCAG00000022319)	ZBTB47 (ENSCCAG00000036182)	KLHL40 (ENSCCAG00000026183)	HHATL (ENSCCAG00000027229)	CCDC13 (ENSCCAG00000037126)	ENSCCAG00000037231	UBXN7 (ENSCCAG00000027870) #16	TM4SF19 (ENSCCAG00000035216) #17	DYNLT2B (ENSCCAG00000038066) #18	PCYT1A (ENSCCAG00000027937) #19	SLC51A (ENSCCAG00000036001) #20	ZDHHC19 (ENSCCAG00000023082) #21	TFRC (ENSCCAG00000030455) #22	TNK2 (ENSCCAG00000031163) #23	ENSCCAG00000021841 #24	ENSCCAG00000029572 #25	RUBCN (ENSCCAG00000030866) #26	FYTTD1 (ENSCCAG00000029719) #27	LRCH3 (ENSCCAG00000035920) #28	IQCG (ENSCCAG00000035200) #29	RPL35A (ENSCCAG00000033151) #30	LMLN (ENSCCAG00000029405) #32
Bolivian squirrel monkey	MODERN SPECIES	83	VIPR1 (ENSSBOG00000024575)	SEC22C (ENSSBOG00000026691)	SS18L2 (ENSSBOG00000034669)	NKTR (ENSSBOG00000025690)	ZBTB47 (ENSSBOG00000020906)	KLHL40 (ENSSBOG00000011999)	HHATL (ENSSBOG00000024436)	CCDC13 (ENSSBOG00000023207)	HIGD1A (ENSSBOG00000023996)	UBXN7 (ENSSBOG00000013375) #16	TM4SF19 (ENSSBOG00000024713) #17	DYNLT2B (ENSSBOG00000035009) #18	PCYT1A (ENSSBOG00000030881) #19	SLC51A (ENSSBOG00000035030) #20	ZDHHC19 (ENSSBOG00000023855) #21	TFRC (ENSSBOG00000034663) #22	TNK2 (ENSSBOG00000031344) #23	ENSSBOG00000032985 #24	ENSSBOG00000030754 #25	RUBCN (ENSSBOG00000031016) #26	FYTTD1 (ENSSBOG00000035412) #27	LRCH3 (ENSSBOG00000031470) #28	IQCG (ENSSBOG00000030070) #29	RPL35A (ENSSBOG00000026321) #30	LMLN (ENSSBOG00000029316) #32
Marmoset	MODERN SPECIES	8	ENSCJAG00000076486	SEC22C (ENSCJAG00000052359)	SS18L2 (ENSCJAG00000077325)	NKTR (ENSCJAG00000018070)	ZBTB47 (ENSCJAG00000038339)	KLHL40 (ENSCJAG00000037032)	HHATL (ENSCJAG00000018116)	CCDC13 (ENSCJAG00000018121)	ENSCJAG00000032668	UBXN7 (ENSCJAG00000018130) #16	TM4SF19 (ENSCJAG00000018141) #17	ENSCJAG00000082888 #18	PCYT1A (ENSCJAG00000015086) #19	SLC51A (ENSCJAG00000015082) #20	ZDHHC19 (ENSCJAG00000076029) #21	TFRC (ENSCJAG00000020043) #22	TNK2 (ENSCJAG00000016427) #23	ENSCJAG00000016442 #24	ENSCJAG00000016448 #25	RUBCN (ENSCJAG00000016456) #26	FYTTD1 (ENSCJAG00000016488) #27	LRCH3 (ENSCJAG00000016506) #28	IQCG (ENSCJAG00000000786) #29	RPL35A (ENSCJAG00000000785) #30	LMLN (ENSCJAG00000000772) #32
Mas night monkey	MODERN SPECIES	1075	VIPR1 (ENSANAG00000033723)	SEC22C (ENSANAG00000033275)	SS18L2 (ENSANAG00000034843)	NKTR (ENSANAG00000025518)	ZBTB47 (ENSANAG00000037099)	KLHL40 (ENSANAG00000028780)	HHATL (ENSANAG00000033713)	CCDC13 (ENSANAG00000024733)	ENSANAG00000025579	UBXN7 (ENSANAG00000024750) #16	TM4SF19 (ENSANAG00000026035) #17	DYNLT2B (ENSANAG00000023451) #18	PCYT1A (ENSANAG00000034891) #19	SLC51A (ENSANAG00000020522) #20	ZDHHC19 (ENSANAG00000025186) #21	TFRC (ENSANAG00000030109) #22	TNK2 (ENSANAG00000034455) #23
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453.a #25	ENSGT00730000111453.b #25	ENSGT00510000046981	ENSGT00940000167391	ENSGT00390000004757.`b.b.b	ENSGT00940000156389.a	ENSGT00940000158154	ENSGT00940000161593	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162953	ENSGT00940000161771
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	1	PAK2 (ENSNLEG00000001627)	PIGX (ENSNLEG00000001618) #7	CEP19 (ENSNLEG00000001611) #8	NRROS (ENSNLEG00000001597) #9	FBXO45 (ENSNLEG00000001590) #11	WDR53 (ENSNLEG00000028566) #12	SMCO1 (ENSNLEG00000001554) #13	RNF168 (ENSNLEG00000001531) #15	UBXN7 (ENSNLEG00000001501) #16	ENSNLEG00000001463 #17	ENSNLEG00000001457 #18	PCYT1A (ENSNLEG00000001401) #19	SLC51A (ENSNLEG00000001357) #20	ENSNLEG00000001346 #21	ENSNLEG00000027179 #22	ENSNLEG00000029343 #22	TNK2 (ENSNLEG00000001316) #23	ENSNLEG00000007767 #24	ENSNLEG00000008398 #25	APOD (ENSNLEG00000008382)	ENSNLEG00000034478	ENSNLEG00000008371	ACAP2 (ENSNLEG00000008339)	XXYLT1 (ENSNLEG00000034040)	FAM43A (ENSNLEG00000018711)	LSG1 (ENSNLEG00000008293)	TMEM44 (ENSNLEG00000008286)	ATP13A3 (ENSNLEG00000008235)	LRRC15 (ENSNLEG00000008226)	ENSNLEG00000030587	OPA1 (ENSNLEG00000006807)
Gibbon	MODERN SPECIES	1	SENP5 (ENSNLEG00000001684)	PAK2 (ENSNLEG00000001627)	PIGX (ENSNLEG00000001618) #7	CEP19 (ENSNLEG00000001611) #8	NRROS (ENSNLEG00000001597) #9	FBXO45 (ENSNLEG00000001590) #11	WDR53 (ENSNLEG00000028566) #12	SMCO1 (ENSNLEG00000001554) #13	RNF168 (ENSNLEG00000001531) #15	UBXN7 (ENSNLEG00000001501) #16	ENSNLEG00000001463 #17	ENSNLEG00000001457 #18	PCYT1A (ENSNLEG00000001401) #19	SLC51A (ENSNLEG00000001357) #20	ENSNLEG00000001346 #21	ENSNLEG00000027179 #22	ENSNLEG00000029343 #22	TNK2 (ENSNLEG00000001316) #23	ENSNLEG00000007767 #24	ENSNLEG00000008398 #25	APOD (ENSNLEG00000008382)	ENSNLEG00000034478	ENSNLEG00000008371	ACAP2 (ENSNLEG00000008339)	XXYLT1 (ENSNLEG00000034040)	FAM43A (ENSNLEG00000018711)	LSG1 (ENSNLEG00000008293)	TMEM44 (ENSNLEG00000008286)	ATP13A3 (ENSNLEG00000008235)	LRRC15 (ENSNLEG00000008226)	ENSNLEG00000030587
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453.a #25	ENSGT00910000144277.b.a.b	ENSGT00730000111453.b #25	ENSGT00510000046981	ENSGT00940000167391	ENSGT00390000004757.`b.b.b.c	ENSGT00940000156389.a	ENSGT00940000158154	ENSGT00940000161593	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162953
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a.pb.b #15	ENSGT00940000153680.a.qb #15	ENSGT00940000153680.a.pb.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453.a #25	ENSGT00910000144277.b.a.b	ENSGT00510000046981	ENSGT00940000167391	ENSGT00390000004757.`b.b.b.c	ENSGT00940000156389.a	ENSGT00940000158154	ENSGT00940000161593	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162953	ENSGT00940000161771
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a.pb.b #15	ENSGT00940000153680.a.pb.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453.a #25	ENSGT00510000046981	ENSGT00940000167391	ENSGT00390000004757.`b.b.b.c	ENSGT00940000156389.a	ENSGT00940000158154	ENSGT00940000161593	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162953	ENSGT00940000161771	ENSGT00940000163072
Pan	ANCESTRAL SPECIES	2	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a.pb.b #15	ENSGT00940000153680.a.pb.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160975.h.a.b	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453.a #25	ENSGT00510000046981	ENSGT00940000167391	ENSGT00390000004757.`b.b.b.c	ENSGT00940000156389.a	ENSGT00940000158154	ENSGT00940000161593	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162953	ENSGT00940000161771
Bonobo	MODERN SPECIES	16	NCBP2 (ENSPPAG00000036789)	SENP5 (ENSPPAG00000041338)	PAK2 (ENSPPAG00000035596)	PIGX (ENSPPAG00000027842) #7	CEP19 (ENSPPAG00000037796) #8	NRROS (ENSPPAG00000035083) #9	FBXO45 (ENSPPAG00000028198) #11	WDR53 (ENSPPAG00000032049) #12	RNF168 (ENSPPAG00000031865) #15	UBXN7 (ENSPPAG00000032351) #16	ENSPPAG00000032070 #17	DYNLT2B (ENSPPAG00000031700) #18	PCYT1A (ENSPPAG00000033606) #19	SLC51A (ENSPPAG00000028761) #20	ZDHHC19 (ENSPPAG00000043850) #21	TFRC (ENSPPAG00000020743) #22	ENSPPAG00000039163	ENSPPAG00000037120	APOD (ENSPPAG00000034555)	ENSPPAG00000038309	PPP1R2 (ENSPPAG00000043836)	ACAP2 (ENSPPAG00000037793)	XXYLT1 (ENSPPAG00000043632)	FAM43A (ENSPPAG00000004780)	LSG1 (ENSPPAG00000029271)	TMEM44 (ENSPPAG00000038345)	ATP13A3 (ENSPPAG00000041433)	GP5 (ENSPPAG00000036894)	LRRC15 (ENSPPAG00000029069)	CPN2 (ENSPPAG00000020911)	ENSPPAG00000019511
Chimpanzee	MODERN SPECIES	16	SENP5 (ENSPTRG00000015788)	PAK2 (ENSPTRG00000015787)	PIGX (ENSPTRG00000015786) #7	CEP19 (ENSPTRG00000015785) #8	NRROS (ENSPTRG00000015784) #9	FBXO45 (ENSPTRG00000015783) #11	WDR53 (ENSPTRG00000015782) #12	SMCO1 (ENSPTRG00000034079) #13	RNF168 (ENSPTRG00000045575) #15	UBXN7 (ENSPTRG00000044067) #16	TM4SF19 (ENSPTRG00000034184) #17	DYNLT2B (ENSPTRG00000015777) #18	PCYT1A (ENSPTRG00000049191) #19	SLC51A (ENSPTRG00000015775) #20	ZDHHC19 (ENSPTRG00000015774) #21	TFRC (ENSPTRG00000015773) #22	ENSPTRG00000046059	ENSPTRG00000048820	TNK2 (ENSPTRG00000049620) #23	ENSPTRG00000051786 #24	ENSPTRG00000042759	ENSPTRG00000045271	ENSPTRG00000042738 #25	APOD (ENSPTRG00000030011)	ENSPTRG00000051495	PPP1R2 (ENSPTRG00000043205)	ACAP2 (ENSPTRG00000015762)	XXYLT1 (ENSPTRG00000015761)	FAM43A (ENSPTRG00000030013)	LSG1 (ENSPTRG00000015760)	TMEM44 (ENSPTRG00000015759)
Human	MODERN SPECIES	15	SENP5 (ENSG00000119231)	PAK2 (ENSG00000180370)	CEP19 (ENSG00000174007) #8	PIGX (ENSG00000163964) #7	NRROS (ENSG00000174004) #9	FBXO45 (ENSG00000174013) #11	WDR53 (ENSG00000185798) #12	SMCO1 (ENSG00000214097) #13	RNF168 (ENSG00000163961) #15	UBXN7 (ENSG00000163960) #16	TM4SF19 (ENSG00000145107) #17	DYNLT2B (ENSG00000213123) #18	PCYT1A (ENSG00000161217) #19	SLC51A (ENSG00000163959) #20	ZDHHC19 (ENSG00000163958) #21	TFRC (ENSG00000072274) #22	ENSG00000289747	TNK2 (ENSG00000061938) #23	MUC4 (ENSG00000145113) #24	MUC20 (ENSG00000176945) #25	APOD (ENSG00000189058)	PPP1R2 (ENSG00000184203)	ACAP2 (ENSG00000114331)	XXYLT1 (ENSG00000173950)	FAM43A (ENSG00000185112)	LSG1 (ENSG00000041802)	TMEM44 (ENSG00000145014)	ATP13A3 (ENSG00000133657)	GP5 (ENSG00000178732)	LRRC15 (ENSG00000172061)	CPN2 (ENSG00000178772)
Gorilla	MODERN SPECIES	16	SENP5 (ENSGGOG00000007248)	PAK2 (ENSGGOG00000007239)	PIGX (ENSGGOG00000006859) #7	CEP19 (ENSGGOG00000025058) #8	NRROS (ENSGGOG00000008057) #9	FBXO45 (ENSGGOG00000014199) #11	WDR53 (ENSGGOG00000014196) #12	ENSGGOG00000042896	RNF168 (ENSGGOG00000014184) #15	UBXN7 (ENSGGOG00000014753) #16	ENSGGOG00000038913 #17	DYNLT2B (ENSGGOG00000013275) #18	ENSGGOG00000001988 #19	SLC51A (ENSGGOG00000005877) #20	ZDHHC19 (ENSGGOG00000004822) #21	TFRC (ENSGGOG00000007229) #22	ENSGGOG00000039150	TNK2 (ENSGGOG00000008767) #23	ENSGGOG00000025791 #24	ENSGGOG00000013585 #25	ENSGGOG00000013586	APOD (ENSGGOG00000001887)	ENSGGOG00000036950	PPP1R2 (ENSGGOG00000025908)	ACAP2 (ENSGGOG00000016078)	XXYLT1 (ENSGGOG00000041811)	ENSGGOG00000025992	FAM43A (ENSGGOG00000024196)	LSG1 (ENSGGOG00000000520)	TMEM44 (ENSGGOG00000002921)	ATP13A3 (ENSGGOG00000011475)
Orangutan	MODERN SPECIES	23	SENP5 (ENSPPYG00000014448)	PAK2 (ENSPPYG00000014447)	PIGX (ENSPPYG00000030638) #7	CEP19 (ENSPPYG00000035598) #8	NRROS (ENSPPYG00000014444) #9	FBXO45 (ENSPPYG00000038968) #11	WDR53 (ENSPPYG00000014443) #12	SMCO1 (ENSPPYG00000037630) #13	RNF168 (ENSPPYG00000036903) #15	UBXN7 (ENSPPYG00000038112) #16	TM4SF19 (ENSPPYG00000031106) #17	ENSPPYG00000014438 #18	PCYT1A (ENSPPYG00000014437) #19	SLC51A (ENSPPYG00000014436) #20	ZDHHC19 (ENSPPYG00000014435) #21	TFRC (ENSPPYG00000014434) #22	ENSPPYG00000014433 #23
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Rhinopithecus	ANCESTRAL SPECIES	150	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356.h #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Black snub-nosed monkey	MODERN SPECIES	182															ENSRBIG00000037526	TFRC (ENSRBIG00000042357) #22	TNK2 (ENSRBIG00000043455) #23
Golden snub-nosed monkey	MODERN SPECIES	2255	CEP19 (ENSRROG00000029243) #8	NRROS (ENSRROG00000001687) #9	ENSRROG00000024361	FBXO45 (ENSRROG00000033207) #11	WDR53 (ENSRROG00000037786) #12	SMCO1 (ENSRROG00000030631) #13	RNF168 (ENSRROG00000043861) #15	UBXN7 (ENSRROG00000042179) #16	ENSRROG00000035740 #17	DYNLT2B (ENSRROG00000036540) #18	PCYT1A (ENSRROG00000032721) #19	ENSRROG00000042812	SLC51A (ENSRROG00000031924) #20	ZDHHC19 (ENSRROG00000027961) #21	ENSRROG00000034209	TFRC (ENSRROG00000028609) #22	TNK2 (ENSRROG00000036469) #23	ENSRROG00000044352 #24	MUC20 (ENSRROG00000025108) #25	RUBCN (ENSRROG00000008068) #26	FYTTD1 (ENSRROG00000014194) #27	LRCH3 (ENSRROG00000045445) #28	IQCG (ENSRROG00000001712) #29	RPL35A (ENSRROG00000008769) #30	LMLN (ENSRROG00000028339) #32
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Vervet Monkey	MODERN SPECIES	6	SENP5 (ENSCSAG00000008701)	PAK2 (ENSCSAG00000008681)	PIGX (ENSCSAG00000008647) #7	CEP19 (ENSCSAG00000008629) #8	NRROS (ENSCSAG00000008625) #9	FBXO45 (ENSCSAG00000008621) #11	WDR53 (ENSCSAG00000008616) #12	SMCO1 (ENSCSAG00000008608) #13	RNF168 (ENSCSAG00000008602) #15	UBXN7 (ENSCSAG00000008596) #16	DYNLT2B (ENSCSAG00000008588) #18	TM4SF19 (ENSCSAG00000008581) #17	ENSCSAG00000008571 #19	SLC51A (ENSCSAG00000008565) #20	ZDHHC19 (ENSCSAG00000008559) #21	TFRC (ENSCSAG00000008546) #22	TNK2 (ENSCSAG00000008535) #23	ENSCSAG00000008513 #24	MUC20 (ENSCSAG00000008489) #25	RUBCN (ENSCSAG00000008480) #26	FYTTD1 (ENSCSAG00000008466) #27	LRCH3 (ENSCSAG00000008457) #28	IQCG (ENSCSAG00000008448) #29	RPL35A (ENSCSAG00000008441) #30	LMLN (ENSCSAG00000008428) #32
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00390000016972.a.b.a.b.b ##30
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00390000016972.a.b.a.b.b ##30
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT00940000156084.cb	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00390000016972.a.b.a.b.b ##30
Drill	MODERN SPECIES	747	SENP5 (ENSMLEG00000042658)	PAK2 (ENSMLEG00000027415)	PIGX (ENSMLEG00000040798) #7	CEP19 (ENSMLEG00000031863) #8	NRROS (ENSMLEG00000031679) #9	FBXO45 (ENSMLEG00000043111) #11	WDR53 (ENSMLEG00000035627) #12	SMCO1 (ENSMLEG00000016859) #13	RNF168 (ENSMLEG00000028797) #15	UBXN7 (ENSMLEG00000040001) #16	TM4SF19 (ENSMLEG00000032084) #17	DYNLT2B (ENSMLEG00000037354) #18	PCYT1A (ENSMLEG00000037016) #19	SLC51A (ENSMLEG00000035793) #20	ZDHHC19 (ENSMLEG00000037644) #21	TFRC (ENSMLEG00000032791) #22	ENSMLEG00000039816	ENSMLEG00000033040 #24	MUC20 (ENSMLEG00000035449) #25	RUBCN (ENSMLEG00000037567) #26	ENSMLEG00000006767	FYTTD1 (ENSMLEG00000033370) #27	ENSMLEG00000037114	IQCG (ENSMLEG00000042691) #29	RPL35A (ENSMLEG00000030292) #30	LMLN (ENSMLEG00000041764) #32
Sooty mangabey	MODERN SPECIES	458	PAK2 (ENSCATG00000039395)	PIGX (ENSCATG00000037075) #7	CEP19 (ENSCATG00000041426) #8	NRROS (ENSCATG00000016167) #9	FBXO45 (ENSCATG00000043844) #11	WDR53 (ENSCATG00000038586) #12	SMCO1 (ENSCATG00000036930) #13	RNF168 (ENSCATG00000036530) #15	UBXN7 (ENSCATG00000020457) #16	TM4SF19 (ENSCATG00000039519) #17	DYNLT2B (ENSCATG00000008923) #18	PCYT1A (ENSCATG00000043705) #19	SLC51A (ENSCATG00000037449) #20	ZDHHC19 (ENSCATG00000034893) #21	ENSCATG00000029445	TFRC (ENSCATG00000034982) #22	TNK2 (ENSCATG00000044992) #23	ENSCATG00000033328 #24	MUC20 (ENSCATG00000040657) #25	RUBCN (ENSCATG00000039381) #26	FYTTD1 (ENSCATG00000037016) #27	LRCH3 (ENSCATG00000042245) #28	IQCG (ENSCATG00000044896) #29	RPL35A (ENSCATG00000018648) #30	LMLN (ENSCATG00000039980) #32	ENSCATG00000030636 ##30
Olive baboon	MODERN SPECIES	11	ENSPANG00000024012 #7	CEP19 (ENSPANG00000019411) #8	NRROS (ENSPANG00000009262) #9	ENSPANG00000043418	FBXO45 (ENSPANG00000009313) #11	WDR53 (ENSPANG00000033361) #12	SMCO1 (ENSPANG00000049201) #13	ENSPANG00000048847	RNF168 (ENSPANG00000020016) #15	UBXN7 (ENSPANG00000017226) #16	TM4SF19 (ENSPANG00000018681) #17	DYNLT2B (ENSPANG00000008851) #18	PCYT1A (ENSPANG00000006484) #19	ENSPANG00000036934	ZDHHC19 (ENSPANG00000005862) #21	TFRC (ENSPANG00000017225) #22	TNK2 (ENSPANG00000019347) #23	MUC20 (ENSPANG00000006483) #25	RUBCN (ENSPANG00000021756) #26	FYTTD1 (ENSPANG00000030359) #27	LRCH3 (ENSPANG00000025311) #28	IQCG (ENSPANG00000025313) #29	RPL35A (ENSPANG00000035800) #30	LMLN (ENSPANG00000025303) #32
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00390000016972.a.b.a.b.a ##30	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00390000016972.a.b.a.b.b ##30
Pig-tailed macaque	MODERN SPECIES	467	SENP5 (ENSMNEG00000036141)	PAK2 (ENSMNEG00000019084)	PIGX (ENSMNEG00000033626) #7	CEP19 (ENSMNEG00000035769) #8	NRROS (ENSMNEG00000041304) #9	FBXO45 (ENSMNEG00000003833) #11	WDR53 (ENSMNEG00000039757) #12	SMCO1 (ENSMNEG00000044601) #13	RNF168 (ENSMNEG00000029370) #15	UBXN7 (ENSMNEG00000030704) #16	TM4SF19 (ENSMNEG00000028863) #17	DYNLT2B (ENSMNEG00000012808) #18	PCYT1A (ENSMNEG00000040781) #19	SLC51A (ENSMNEG00000042737) #20	ZDHHC19 (ENSMNEG00000036956) #21	TFRC (ENSMNEG00000039452) #22	TNK2 (ENSMNEG00000041359) #23	ENSMNEG00000034965 #24	MUC20 (ENSMNEG00000030229) #25	RUBCN (ENSMNEG00000039393) #26	FYTTD1 (ENSMNEG00000038497) #27	LRCH3 (ENSMNEG00000034724) #28	ENSMNEG00000043845 ##30	IQCG (ENSMNEG00000043024) #29	LMLN (ENSMNEG00000029832) #32	ENSMNEG00000027895 ##30
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.b.a.a.a.b.a.a.a.a.a	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32
Crab-eating macaque	DUPLICATION
Crab-eating macaque	MODERN SPECIES	11	NRROS (ENSMFAG00000036922) #9	FBXO45 (ENSMFAG00000043065) #11	WDR53 (ENSMFAG00000040985) #12	SMCO1 (ENSMFAG00000000378) #13	RNF168 (ENSMFAG00000046142) #15	ENSMFAG00000061000	UBXN7 (ENSMFAG00000037092) #16	ENSMFAG00000061111	TM4SF19 (ENSMFAG00000001963) #17	ENSMFAG00000063414	ENSMFAG00000033045 #18	PCYT1A (ENSMFAG00000045428) #19	SLC51A (ENSMFAG00000001755) #20	ENSMFAG00000001569 #21	ENSMFAG00000055866	TFRC (ENSMFAG00000000711) #22	TNK2 (ENSMFAG00000046083) #23	ENSMFAG00000001838 #24	MUC20 (ENSMFAG00000033975) #25	RUBCN (ENSMFAG00000001615) #26	FYTTD1 (ENSMFAG00000033352) #27	LRCH3 (ENSMFAG00000045169) #28	IQCG (ENSMFAG00000034341) #29	RPL35A (ENSMFAG00000050543) #30	LMLN (ENSMFAG00000031579) #32	ENSMFAG00000065831
Crab-eating macaque	MODERN SPECIES	2	MYF6 (ENSMFAG00000033881)	MYF5 (ENSMFAG00000042044)	LIN7A (ENSMFAG00000040160)	ENSMFAG00000031214	ACSS3 (ENSMFAG00000040344)	PPFIA2 (ENSMFAG00000031204)	ENSMFAG00000049838	CCDC59 (ENSMFAG00000034303)	METTL25 (ENSMFAG00000036420)	ENSMFAG00000051090	ENSMFAG00000052001	TMTC2 (ENSMFAG00000038030)	ENSMFAG00000053756	ENSMFAG00000051138	ENSMFAG00000060580	ENSMFAG00000047713 #22	ENSMFAG00000047900	ENSMFAG00000031125	SLC6A15 (ENSMFAG00000003556)	TSPAN19 (ENSMFAG00000038735)	LRRIQ1 (ENSMFAG00000044599)	ENSMFAG00000058171	ENSMFAG00000050164	ALX1 (ENSMFAG00000030471)	RASSF9 (ENSMFAG00000039584)	NTS (ENSMFAG00000024858)	MGAT4C (ENSMFAG00000044473)	ENSMFAG00000065083	ENSMFAG00000064001	ENSMFAG00000055661	ENSMFAG00000060498
Rhesus	DUPLICATION
Rhesus	MODERN SPECIES	11	CEP19 (ENSMMUG00000003773) #8	NRROS (ENSMMUG00000021637) #9	FBXO45 (ENSMMUG00000054814) #11	WDR53 (ENSMMUG00000004034) #12	RNF168 (ENSMMUG00000004035) #15	UBXN7 (ENSMMUG00000019100) #16	ENSMMUG00000058695	ENSMMUG00000052546	TM4SF19 (ENSMMUG00000017310) #17	ENSMMUG00000061617	DYNLT2B (ENSMMUG00000064126) #18	PCYT1A (ENSMMUG00000038924) #19	SLC51A (ENSMMUG00000022674) #20	ZDHHC19 (ENSMMUG00000022673) #21	ENSMMUG00000054838	TFRC (ENSMMUG00000002114) #22	TNK2 (ENSMMUG00000000972) #23	MUC4 (ENSMMUG00000047184) #24	MUC20 (ENSMMUG00000008355) #25	RUBCN (ENSMMUG00000006623) #26	FYTTD1 (ENSMMUG00000048439) #27	LRCH3 (ENSMMUG00000000184) #28	RPL35A (ENSMMUG00000064160) #30	IQCG (ENSMMUG00000031190) #29	LMLN (ENSMMUG00000000051) #32	ENSMMUG00000055551
Rhesus	MODERN SPECIES	2	OTOGL (ENSMMUG00000000121)	PTPRQ (ENSMMUG00000037711)	MYF6 (ENSMMUG00000011667)	MYF5 (ENSMMUG00000011669)	LIN7A (ENSMMUG00000011671)	ENSMMUG00000017463	ACSS3 (ENSMMUG00000013800)	ENSMMUG00000046323	PPFIA2 (ENSMMUG00000013804)	ENSMMUG00000050266	CCDC59 (ENSMMUG00000063005)	METTL25 (ENSMMUG00000002514)	ENSMMUG00000059068	TMTC2 (ENSMMUG00000011305)	ENSMMUG00000043159	ENSMMUG00000058294 #22	SLC6A15 (ENSMMUG00000013650)	TSPAN19 (ENSMMUG00000042255)	LRRIQ1 (ENSMMUG00000016535)	ENSMMUG00000052077	ENSMMUG00000037648	RASSF9 (ENSMMUG00000058491)	NTS (ENSMMUG00000023155)	MGAT4C (ENSMMUG00000060394)	ENSMMUG00000031648	C11H12orf50 (ENSMMUG00000015859)	C11H12orf29 (ENSMMUG00000015860)	CEP290 (ENSMMUG00000015862)	TMTC3 (ENSMMUG00000015864)	KITLG (ENSMMUG00000051340)	DUSP6 (ENSMMUG00000054968)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j ##30	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Glires	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Myomorpha	ANCESTRAL SPECIES	14	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Muroidea	ANCESTRAL SPECIES	11	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Muroidea_A	ANCESTRAL SPECIES	17	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.b.a.b ##30	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36
Cricetidae	ANCESTRAL SPECIES	16	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Cricetinae	ANCESTRAL SPECIES	10	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.b.a.b ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Chinese hamster chok1gshd	MODERN SPECIES	382	Senp5 (ENSCGRG00001020222)	Pak2 (ENSCGRG00001009279)	Pigx (ENSCGRG00001018333) #7	Cep19 (ENSCGRG00001019059) #8	Nrros (ENSCGRG00001021758) #9	Fbxo45 (ENSCGRG00001001988) #11	Wdr53 (ENSCGRG00001003183) #12	Smco1 (ENSCGRG00001004994) #13	RNF168 (ENSCGRG00001020081) #15	Ubxn7 (ENSCGRG00001022847) #16	Tm4sf19 (ENSCGRG00001023698) #17	Dynlt2b (ENSCGRG00001002556) #18	Pcyt1a (ENSCGRG00001010391) #19	Slc51a (ENSCGRG00001019457) #20	Zdhhc19 (ENSCGRG00001012229) #21	Tfrc (ENSCGRG00001018307) #22	Tnk2 (ENSCGRG00001023939) #23	Muc20 (ENSCGRG00001020342) #25	Smbd1 (ENSCGRG00001015610)	Rubcn (ENSCGRG00001003648) #26	ENSCGRG00001023957 #27	Lrch3 (ENSCGRG00001016114) #28	Iqcg (ENSCGRG00001019396) #29	ENSCGRG00001002381 ##30	Lmln (ENSCGRG00001009959) #32	ENSCGRG00001004790	Osbpl11 (ENSCGRG00001021176) #33	Snx4 (ENSCGRG00001024307) #34	Zfp148 (ENSCGRG00001023998) #35	Slc12a8 (ENSCGRG00001021103) #36	Heg1 (ENSCGRG00001008383) #37
Golden Hamster	MODERN SPECIES	645	ENSMAUG00000006066	Pigz (ENSMAUG00000010600)	Ncbp2 (ENSMAUG00000021481)	ENSMAUG00000020406	Pak2 (ENSMAUG00000021281)	Pigx (ENSMAUG00000015495) #7	Nrros (ENSMAUG00000021516) #9	Fbxo45 (ENSMAUG00000014792) #11	Rnf168 (ENSMAUG00000013932) #15	Ubxn7 (ENSMAUG00000017723) #16	Tm4sf19 (ENSMAUG00000018825) #17	Dynlt2b (ENSMAUG00000011124) #18	Pcyt1a (ENSMAUG00000010629) #19	Slc51a (ENSMAUG00000008901) #20	Zdhhc19 (ENSMAUG00000013471) #21	Tfrc (ENSMAUG00000006849) #22	Tnk2 (ENSMAUG00000019229) #23	Muc20 (ENSMAUG00000003376) #25	Smbd1 (ENSMAUG00000003950)	Rubcn (ENSMAUG00000014600) #26	Fyttd1 (ENSMAUG00000010679) #27	Lrch3 (ENSMAUG00000010736) #28	ENSMAUG00000011763	Lmln (ENSMAUG00000021495) #32	Osbpl11 (ENSMAUG00000018783) #33	Snx4 (ENSMAUG00000016339) #34	Zfp148 (ENSMAUG00000013472) #35	Slc12a8 (ENSMAUG00000001683) #36	ENSMAUG00000015456 #37	Itgb5 (ENSMAUG00000012958)	Umps (ENSMAUG00000010311)
Cricetidae_B	ANCESTRAL SPECIES	13	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Prairie vole	MODERN SPECIES	7	ENSMOCG00000009678	Pak2 (ENSMOCG00000019984)	Pigx (ENSMOCG00000015500) #7	Cep19 (ENSMOCG00000021934) #8	ENSMOCG00000017712	Nrros (ENSMOCG00000000802) #9	Fbxo45 (ENSMOCG00000001568) #11	Wdr53 (ENSMOCG00000017876) #12	Smco1 (ENSMOCG00000015622) #13	ENSMOCG00000010870	Tm4sf19 (ENSMOCG00000005629) #17	Dynlt2b (ENSMOCG00000009907) #18	Pcyt1a (ENSMOCG00000018207) #19	Slc51a (ENSMOCG00000014678) #20	Zdhhc19 (ENSMOCG00000008637) #21	Tfrc (ENSMOCG00000006011) #22	Tnk2 (ENSMOCG00000019893) #23	Muc20 (ENSMOCG00000022305) #25	Smbd1 (ENSMOCG00000020862)	Rubcn (ENSMOCG00000013046) #26	Fyttd1 (ENSMOCG00000015509) #27	Lrch3 (ENSMOCG00000001453) #28	Iqcg (ENSMOCG00000003184) #29	ENSMOCG00000022359 ##30	Lmln (ENSMOCG00000009918) #32	ENSMOCG00000001703	Osbpl11 (ENSMOCG00000002032) #33	Snx4 (ENSMOCG00000011568) #34	Zfp148 (ENSMOCG00000003866) #35	Slc12a8 (ENSMOCG00000000790) #36	ENSMOCG00000003042 #37
Northern American deer mouse	MODERN SPECIES	3	Pak2 (ENSPEMG00000009908)	Pigx (ENSPEMG00000010304) #7	Cep19 (ENSPEMG00000027190) #8	Nrros (ENSPEMG00000010944) #9	Fbxo45 (ENSPEMG00000026945) #11	Wdr53 (ENSPEMG00000011303) #12	Smco1 (ENSPEMG00000011840) #13	Rnf168 (ENSPEMG00000030924) #15	Ubxn7 (ENSPEMG00000013410) #16	Tm4sf19 (ENSPEMG00000014756) #17	Dynlt2b (ENSPEMG00000015020) #18	Pcyt1a (ENSPEMG00000024617) #19	Slc51a (ENSPEMG00000010117) #20	Zdhhc19 (ENSPEMG00000027121) #21	ENSPEMG00000029332	Tfrc (ENSPEMG00000011877) #22	Tnk2 (ENSPEMG00000014501) #23	ENSPEMG00000024593 #24	Smbd1 (ENSPEMG00000017909)	Rubcn (ENSPEMG00000001907) #26	Fyttd1 (ENSPEMG00000011670) #27	Lrch3 (ENSPEMG00000010241) #28	Iqcg (ENSPEMG00000017522) #29	Rpl35a (ENSPEMG00000000277) ##30	Lmln (ENSPEMG00000008034) #32	Osbpl11 (ENSPEMG00000009045) #33	Snx4 (ENSPEMG00000011907) #34	Zfp148 (ENSPEMG00000012613) #35	Slc12a8 (ENSPEMG00000018474) #36	ENSPEMG00000027165 #37	ENSPEMG00000015000
Murinae	ANCESTRAL SPECIES	13	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.b.a.b.c.a.b.a ##30	ENSGT00390000016972.b.j.a.a.c ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36
Mus	ANCESTRAL SPECIES	13	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a.c ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Mus_A	ANCESTRAL SPECIES	18	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT00940000162932.d	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a.c ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Mus_B	ANCESTRAL SPECIES	18	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT00940000162932.d	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a.c ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Mouse	MODERN SPECIES	7	Pak2 (ENSMUSG00000022781)	Pigx (ENSMUSG00000023791) #7	Cep19 (ENSMUSG00000035790) #8	Nrros (ENSMUSG00000052384) #9	Bex6 (ENSMUSG00000075269)	Fbxo45 (ENSMUSG00000035764) #11	Wdr53 (ENSMUSG00000022787) #12	Smco1 (ENSMUSG00000046345) #13	Rnf168 (ENSMUSG00000014074) #15	Ubxn7 (ENSMUSG00000053774) #16	Tm4sf19 (ENSMUSG00000079625) #17	Dynlt2b (ENSMUSG00000014075) #18	Pcyt1a (ENSMUSG00000005615) #19	Slc51a (ENSMUSG00000035699) #20	Zdhhc19 (ENSMUSG00000052363) #21	Tfrc (ENSMUSG00000022797) #22	Tnk2 (ENSMUSG00000022791) #23	Muc4 (ENSMUSG00000118672) #24	Muc20 (ENSMUSG00000035638) #25	Smbd1 (ENSMUSG00000094430)	Rubcn (ENSMUSG00000035629) #26	Fyttd1 (ENSMUSG00000022800) #27	Lrch3 (ENSMUSG00000022801) #28	Iqcg (ENSMUSG00000035578) #29	Rpl35a (ENSMUSG00000060636) ##30	Lmln (ENSMUSG00000022802) #32	Osbpl11 (ENSMUSG00000022807) #33	Snx4 (ENSMUSG00000022808) #34	Zfp148 (ENSMUSG00000022811) #35	Slc12a8 (ENSMUSG00000035506) #36	Heg1 (ENSMUSG00000075254) #37
Mus_C	ANCESTRAL SPECIES	12	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT00940000162932.d	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.b.a.b.c.a.b.b ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
spretus	MODERN SPECIES	7	Pak2 (MGP_SPRETEiJ_G0021557)	Pigx (MGP_SPRETEiJ_G0021558) #7	Cep19 (MGP_SPRETEiJ_G0021559) #8	Nrros (MGP_SPRETEiJ_G0021560) #9	Bex6 (MGP_SPRETEiJ_G0021561)	Fbxo45 (MGP_SPRETEiJ_G0021562) #11	Wdr53 (MGP_SPRETEiJ_G0021563) #12	Smco1 (MGP_SPRETEiJ_G0021564) #13	Rnf168 (MGP_SPRETEiJ_G0021565) #15	Ubxn7 (MGP_SPRETEiJ_G0021566) #16	Tm4sf19 (MGP_SPRETEiJ_G0021567) #17	Dynlt2b (MGP_SPRETEiJ_G0021568) #18	Pcyt1a (MGP_SPRETEiJ_G0021569) #19	Slc51a (MGP_SPRETEiJ_G0021570) #20	Zdhhc19 (MGP_SPRETEiJ_G0021571) #21	Tfrc (MGP_SPRETEiJ_G0021572) #22	Tnk2 (MGP_SPRETEiJ_G0021573) #23	MGP_SPRETEiJ_G0021574 #24	Muc20 (MGP_SPRETEiJ_G0021575) #25	Smbd1 (MGP_SPRETEiJ_G0021576)	Rubcn (MGP_SPRETEiJ_G0021577) #26	Fyttd1 (MGP_SPRETEiJ_G0021578) #27	Lrch3 (MGP_SPRETEiJ_G0021579) #28	Iqcg (MGP_SPRETEiJ_G0021580) #29	MGP_SPRETEiJ_G0021581 ##30	Lmln (MGP_SPRETEiJ_G0021582) #32	Osbpl11 (MGP_SPRETEiJ_G0021583) #33	Snx4 (MGP_SPRETEiJ_G0021584) #34	Zfp148 (MGP_SPRETEiJ_G0021585) #35	Slc12a8 (MGP_SPRETEiJ_G0021586) #36	Heg1 (MGP_SPRETEiJ_G0021587) #37
Steppe mouse	MODERN SPECIES	14												ENSMSIG00000008183 #19	ENSMSIG00000008198	Slc51a (ENSMSIG00000008209) #20	Zdhhc19 (ENSMSIG00000008234) #21	Tfrc (ENSMSIG00000008256) #22	Tnk2 (ENSMSIG00000008368) #23	ENSMSIG00000008577	Muc20 (ENSMSIG00000010193) #25	Rubcn (ENSMSIG00000010232) #26	Fyttd1 (ENSMSIG00000010860) #27	Lrch3 (ENSMSIG00000010936) #28	ENSMSIG00000011134 ##30	Lmln (ENSMSIG00000011200) #32	ENSMSIG00000011251	Osbpl11 (ENSMSIG00000011262) #33	Snx4 (ENSMSIG00000011319) #34	Zfp148 (ENSMSIG00000011371) #35	Slc12a8 (ENSMSIG00000011450) #36	ENSMSIG00000011673 #37	ENSMSIG00000011690 #37
Ryukyu mouse	MODERN SPECIES	7	Pak2 (MGP_CAROLIEiJ_G0020661)	MGP_CAROLIEiJ_G0020662 #7	Cep19 (MGP_CAROLIEiJ_G0020663) #8	Nrros (MGP_CAROLIEiJ_G0020664) #9	Bex6 (MGP_CAROLIEiJ_G0020665)	Fbxo45 (MGP_CAROLIEiJ_G0020666) #11	Wdr53 (MGP_CAROLIEiJ_G0020667) #12	Smco1 (MGP_CAROLIEiJ_G0020668) #13	Rnf168 (MGP_CAROLIEiJ_G0020669) #15	Ubxn7 (MGP_CAROLIEiJ_G0020670) #16	Tm4sf19 (MGP_CAROLIEiJ_G0020671) #17	Dynlt2b (MGP_CAROLIEiJ_G0020672) #18	Pcyt1a (MGP_CAROLIEiJ_G0020673) #19	Slc51a (MGP_CAROLIEiJ_G0020674) #20	Zdhhc19 (MGP_CAROLIEiJ_G0020675) #21	Tfrc (MGP_CAROLIEiJ_G0020676) #22	Tnk2 (MGP_CAROLIEiJ_G0020677) #23	MGP_CAROLIEiJ_G0020678 #24	Muc20 (MGP_CAROLIEiJ_G0020679) #25	Smbd1 (MGP_CAROLIEiJ_G0020680)	Rubcn (MGP_CAROLIEiJ_G0020681) #26	Fyttd1 (MGP_CAROLIEiJ_G0020682) #27	Lrch3 (MGP_CAROLIEiJ_G0020683) #28	MGP_CAROLIEiJ_G0020684	Rpl35a (MGP_CAROLIEiJ_G0020685) ##30	Lmln (MGP_CAROLIEiJ_G0020686) #32	Osbpl11 (MGP_CAROLIEiJ_G0020687) #33	Snx4 (MGP_CAROLIEiJ_G0020688) #34	Zfp148 (MGP_CAROLIEiJ_G0020689) #35	Slc12a8 (MGP_CAROLIEiJ_G0020690) #36	Heg1 (MGP_CAROLIEiJ_G0020691) #37
Shrew mouse	MODERN SPECIES	3	Senp5 (MGP_PahariEiJ_G0016364)	Pak2 (MGP_PahariEiJ_G0016365)	Pigx (MGP_PahariEiJ_G0016366) #7	Cep19 (MGP_PahariEiJ_G0016367) #8	Nrros (MGP_PahariEiJ_G0016368) #9	Fbxo45 (MGP_PahariEiJ_G0016369) #11	Wdr53 (MGP_PahariEiJ_G0016370) #12	Smco1 (MGP_PahariEiJ_G0016371) #13	Rnf168 (MGP_PahariEiJ_G0016372) #15	Ubxn7 (MGP_PahariEiJ_G0016373) #16	Tm4sf19 (MGP_PahariEiJ_G0016374) #17	Dynlt2b (MGP_PahariEiJ_G0016375) #18	Pcyt1a (MGP_PahariEiJ_G0016376) #19	Slc51a (MGP_PahariEiJ_G0016377) #20	Zdhhc19 (MGP_PahariEiJ_G0016378) #21	Tfrc (MGP_PahariEiJ_G0016379) #22	Tnk2 (MGP_PahariEiJ_G0016380) #23	MGP_PahariEiJ_G0016381 #24	Muc20 (MGP_PahariEiJ_G0016382) #25	Smbd1 (MGP_PahariEiJ_G0016383)	Rubcn (MGP_PahariEiJ_G0016384) #26	Fyttd1 (MGP_PahariEiJ_G0016385) #27	Lrch3 (MGP_PahariEiJ_G0016386) #28	MGP_PahariEiJ_G0016387 #29	MGP_PahariEiJ_G0016388 ##30	Lmln (MGP_PahariEiJ_G0016389) #32	Osbpl11 (MGP_PahariEiJ_G0016390) #33	Snx4 (MGP_PahariEiJ_G0016391) #34	Zfp148 (MGP_PahariEiJ_G0016392) #35	Slc12a8 (MGP_PahariEiJ_G0016393) #36	Heg1 (MGP_PahariEiJ_G0016394) #37
Rat	MODERN SPECIES	2	Senp5 (ENSRNOG00000064973)	Pak2 (ENSRNOG00000001747)	Pigx (ENSRNOG00000033623) #7	Cep19 (ENSRNOG00000024924) #8	Nrros (ENSRNOG00000001752) #9	Fbxo45 (ENSRNOG00000067589) #11	Wdr53 (ENSRNOG00000001754) #12	Smco1 (ENSRNOG00000024960) #13	Rnf168 (ENSRNOG00000043345) #15	AABR07034438.1 (ENSRNOG00000046969) #16	Tm4sf19 (ENSRNOG00000001757) #17	Dynlt2b (ENSRNOG00000001758) #18	Pcyt1a (ENSRNOG00000001762) #19	Slc51a (ENSRNOG00000001765) #20	Zdhhc19 (ENSRNOG00000025055) #21	Tfrc (ENSRNOG00000001766) #22	Tnk2 (ENSRNOG00000001769) #23	Muc20 (ENSRNOG00000001776) #25	LOC100910650 (ENSRNOG00000055586)	Rubcn (ENSRNOG00000059880) #26	Fyttd1 (ENSRNOG00000034233) #27	Lrch3 (ENSRNOG00000001774) #28	Iqcg (ENSRNOG00000026420) #29	Rpl35a (ENSRNOG00000064222) ##30	Lmln (ENSRNOG00000001781) #32	Osbpl11 (ENSRNOG00000001782) #33	Snx4 (ENSRNOG00000001786) #34	AC110981.1 (ENSRNOG00000026991)	Zfp148 (ENSRNOG00000001789) #35	Slc12a8 (ENSRNOG00000001792) #36	Muc13 (ENSRNOG00000001794)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1032	Pak2 (ENSNGAG00000014965)	Pigx (ENSNGAG00000016907) #7	ENSNGAG00000015835 #8	Nrros (ENSNGAG00000016880) #9	Fbxo45 (ENSNGAG00000006596) #11	Wdr53 (ENSNGAG00000007853) #12	Smco1 (ENSNGAG00000008841) #13	Rnf168 (ENSNGAG00000020066) #15	ENSNGAG00000016339	Tm4sf19 (ENSNGAG00000020461) #17	Dynlt2b (ENSNGAG00000000485) #18	Pcyt1a (ENSNGAG00000002902) #19	Slc51a (ENSNGAG00000020819) #20	Zdhhc19 (ENSNGAG00000021806) #21	ENSNGAG00000017038	Tfrc (ENSNGAG00000015955) #22	Tnk2 (ENSNGAG00000020153) #23	Muc20 (ENSNGAG00000013676) #25	Smbd1 (ENSNGAG00000005284)	Rubcn (ENSNGAG00000022347) #26	Fyttd1 (ENSNGAG00000020280) #27	Lrch3 (ENSNGAG00000016372) #28	Iqcg (ENSNGAG00000012280) #29	ENSNGAG00000013109 ##30	Lmln (ENSNGAG00000020463) #32	Osbpl11 (ENSNGAG00000011167) #33
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00950000183090.C	ENSGT00390000001143	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Marmotini	ANCESTRAL SPECIES	13	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00960000189442.c	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00390000001455.eb.b	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Marmotini_b	ANCESTRAL SPECIES	36					ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00680000101538	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT01090000259987.b.b.a.b
Arctic ground squirrel	MODERN SPECIES	5		PAK2 (ENSUPAG00010001361)	PIGX (ENSUPAG00010001344) #7	CEP19 (ENSUPAG00010001333) #8	NRROS (ENSUPAG00010001318) #9	FBXO45 (ENSUPAG00010001306) #11	WDR53 (ENSUPAG00010001293) #12	RNF168 (ENSUPAG00010001252) #15	ENSUPAG00010001207	ENSUPAG00010001192	ENSUPAG00010001176	TM4SF19 (ENSUPAG00010001160) #17	DYNLT2B (ENSUPAG00010001140) #18	PCYT1A (ENSUPAG00010001106) #19	SLC51A (ENSUPAG00010001079) #20	TFRC (ENSUPAG00010001069) #22	TNK2 (ENSUPAG00010000802) #23	ENSUPAG00010000681 #24	ENSUPAG00010000665	RUBCN (ENSUPAG00010000181) #26	FYTTD1 (ENSUPAG00010000005) #27	LRCH3 (ENSUPAG00010021703) #28	IQCG (ENSUPAG00010021682) #29	ENSUPAG00010021677 ##30	LMLN (ENSUPAG00010021673) #32	ENSUPAG00010021670	OSBPL11 (ENSUPAG00010021663) #33	ENSUPAG00010021655 #21	ENSUPAG00010021644 #34	ZNF148 (ENSUPAG00010021634) #35	SLC12A8 (ENSUPAG00010021430) #36
Squirrel	MODERN SPECIES	384			PAK2 (ENSSTOG00000008254)	PIGX (ENSSTOG00000004223) #7	CEP19 (ENSSTOG00000004214) #8	NRROS (ENSSTOG00000004209) #9	FBXO45 (ENSSTOG00000004198) #11	WDR53 (ENSSTOG00000027754) #12	SMCO1 (ENSSTOG00000024499) #13	ENSSTOG00000030064 #15	ENSSTOG00000026738	TM4SF19 (ENSSTOG00000025798) #17	DYNLT2B (ENSSTOG00000025298) #18	PCYT1A (ENSSTOG00000027304) #19	SLC51A (ENSSTOG00000014567) #20	TFRC (ENSSTOG00000003718) #22	TNK2 (ENSSTOG00000004761) #23	RUBCN (ENSSTOG00000008231) #26	ENSSTOG00000024876	FYTTD1 (ENSSTOG00000028291) #27	LRCH3 (ENSSTOG00000008279) #28	IQCG (ENSSTOG00000008310) #29	RPL35A (ENSSTOG00000008334) ##30	LMLN (ENSSTOG00000027702) #32
Alpin marmot	MODERN SPECIES	19	PIGX (ENSMMMG00000010154) #7	CEP19 (ENSMMMG00000010134) #8	NRROS (ENSMMMG00000010121) #9	FBXO45 (ENSMMMG00000010104) #11	WDR53 (ENSMMMG00000010095) #12	SMCO1 (ENSMMMG00000010085) #13	ENSMMMG00000010072 #15	UBXN7 (ENSMMMG00000010021) #16	ENSMMMG00000010014	TM4SF19 (ENSMMMG00000010003) #17	ENSMMMG00000009998	DYNLT2B (ENSMMMG00000009960) #18	PCYT1A (ENSMMMG00000009898) #19	SLC51A (ENSMMMG00000009887) #20	ENSMMMG00000009877	TFRC (ENSMMMG00000009845) #22	TNK2 (ENSMMMG00000009579) #23	ENSMMMG00000009480 #24	ENSMMMG00000009451 #25	ENSMMMG00000009440	ENSMMMG00000009437	RUBCN (ENSMMMG00000009018) #26	ENSMMMG00000009008	FYTTD1 (ENSMMMG00000008957) #27	ENSMMMG00000008951	LRCH3 (ENSMMMG00000008714) #28	IQCG (ENSMMMG00000008652) #29	ENSMMMG00000008615 ##30	LMLN (ENSMMMG00000008588) #32	ENSMMMG00000008585	ENSMMMG00000008583
Eurasian red squirrel	MODERN SPECIES	1	ENSSVLG00005014408	PIGX (ENSSVLG00005014301) #7	CEP19 (ENSSVLG00005014259) #8	ENSSVLG00005014232	NRROS (ENSSVLG00005014188) #9	FBXO45 (ENSSVLG00005014107) #11	WDR53 (ENSSVLG00005014056) #12	SMCO1 (ENSSVLG00005013990) #13	RNF168 (ENSSVLG00005013906) #15	ENSSVLG00005013795	ENSSVLG00005013727	TM4SF19 (ENSSVLG00005013691) #17	DYNLT2B (ENSSVLG00005013532) #18	PCYT1A (ENSSVLG00005013437) #19	SLC51A (ENSSVLG00005013310) #20	TFRC (ENSSVLG00005013203) #22	TNK2 (ENSSVLG00005012854) #23	ENSSVLG00005012701	ENSSVLG00005012145 #24	ENSSVLG00005012022	ENSSVLG00005011963 #25	ENSSVLG00005011912	RUBCN (ENSSVLG00005011799) #26	FYTTD1 (ENSSVLG00005011692) #27	LRCH3 (ENSSVLG00005011278) #28	IQCG (ENSSVLG00005010949) #29	ENSSVLG00005010878 ##30	LMLN (ENSSVLG00005010315) #32	OSBPL11 (ENSSVLG00005010177) #33	ENSSVLG00005010146	SNX4 (ENSSVLG00005010065) #34
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000156941	ENSGT00940000154552.a.a.a	ENSGT00940000156162.C.k	ENSGT00940000160614	ENSGT00940000154384.h.a	ENSGT00950000183189.a.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000156941	ENSGT00940000154552.a.a.a	ENSGT00940000156162.C.k	ENSGT00940000160614	ENSGT00940000154384.h.a	ENSGT00940000154384.h.b.f	ENSGT00950000183189.a.b.a	ENSGT00390000015010
Guinea pig	MODERN SPECIES	7	SENP5 (ENSCPOG00000002968)	PAK2 (ENSCPOG00000004177)	PIGX (ENSCPOG00000006807) #7	CEP19 (ENSCPOG00000033761) #8	NRROS (ENSCPOG00000037074) #9	FBXO45 (ENSCPOG00000036150) #11	WDR53 (ENSCPOG00000026530) #12	SMCO1 (ENSCPOG00000039096) #13	RNF168 (ENSCPOG00000036498) #15	ENSCPOG00000011007	TM4SF19 (ENSCPOG00000013709) #17	DYNLT2B (ENSCPOG00000038938) #18	PCYT1A (ENSCPOG00000030268) #19	SLC51A (ENSCPOG00000015333) #20	ZDHHC19 (ENSCPOG00000004594) #21	TFRC (ENSCPOG00000013993) #22	TNK2 (ENSCPOG00000009702) #23	RUBCN (ENSCPOG00000002051) #26	FYTTD1 (ENSCPOG00000011463) #27	LRCH3 (ENSCPOG00000011465) #28	IQCG (ENSCPOG00000007048) #29	ENSCPOG00000015446 ##30	LMLN (ENSCPOG00000015448) #32	ENSCPOG00000001337	MCCC1 (ENSCPOG00000010866)	ENSCPOG00000022086	ATP11B (ENSCPOG00000006309)
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.a ##30	ENSGT00390000008796 #32	ENSGT00940000156941	ENSGT00940000170892	ENSGT00940000156162.C.k	ENSGT00940000160614	ENSGT00940000154384.h.a	ENSGT00950000183189.a.b.a	ENSGT00390000015010	ENSGT00390000013701
Long-tailed chinchilla	MODERN SPECIES	127	SENP5 (ENSCLAG00000013120)	PAK2 (ENSCLAG00000011908)	ENSCLAG00000015839 #7	CEP19 (ENSCLAG00000013341) #8	NRROS (ENSCLAG00000013551) #9	FBXO45 (ENSCLAG00000012427) #11	WDR53 (ENSCLAG00000012067) #12	SMCO1 (ENSCLAG00000011782) #13	RNF168 (ENSCLAG00000011355) #15	UBXN7 (ENSCLAG00000012110) #16	TM4SF19 (ENSCLAG00000014835) #17	DYNLT2B (ENSCLAG00000014593) #18	PCYT1A (ENSCLAG00000011331) #19	SLC51A (ENSCLAG00000011171) #20	ZDHHC19 (ENSCLAG00000010728) #21	TFRC (ENSCLAG00000014371) #22	TNK2 (ENSCLAG00000012555) #23	RUBCN (ENSCLAG00000013495) #26	ENSCLAG00000012210 #27	LRCH3 (ENSCLAG00000015543) #28	IQCG (ENSCLAG00000013851) #29	ENSCLAG00000012348 ##30	LMLN (ENSCLAG00000011520) #32	MCCC1 (ENSCLAG00000014174)	ENSCLAG00000014207	ATP11B (ENSCLAG00000012551)	SOX2 (ENSCLAG00000017978)	DNAJC19 (ENSCLAG00000011246)	FXR1 (ENSCLAG00000014182)	CCDC39 (ENSCLAG00000012683)	TTC14 (ENSCLAG00000013302)
Degu	MODERN SPECIES	244	ENSODEG00000013034	ENSODEG00000012610	PAK2 (ENSODEG00000011075)	PIGX (ENSODEG00000012342) #7	CEP19 (ENSODEG00000011760) #8	NRROS (ENSODEG00000013227) #9	FBXO45 (ENSODEG00000011620) #11	WDR53 (ENSODEG00000012349) #12	SMCO1 (ENSODEG00000012758) #13	ENSODEG00000012744	TM4SF19 (ENSODEG00000011698) #17	DYNLT2B (ENSODEG00000012040) #18	PCYT1A (ENSODEG00000012250) #19	SLC51A (ENSODEG00000011108) #20	ZDHHC19 (ENSODEG00000011492) #21	TFRC (ENSODEG00000012223) #22	ENSODEG00000011946	RUBCN (ENSODEG00000011517) #26	ENSODEG00000012844 #27	LRCH3 (ENSODEG00000012839) #28	ENSODEG00000011786	IQCG (ENSODEG00000012008) #29	ENSODEG00000012656 ##30	LMLN (ENSODEG00000013287) #32	MCCC1 (ENSODEG00000012286)	ENSODEG00000020304	ENSODEG00000020145	ENSODEG00000013129	ENSODEG00000012228	ATP11B (ENSODEG00000014170)	ENSODEG00000020056
Naked mole-rat female	MODERN SPECIES	27	PIGX (ENSHGLG00000049080) #7	CEP19 (ENSHGLG00000044715) #8	NRROS (ENSHGLG00000019215) #9	ENSHGLG00000019151 #11	WDR53 (ENSHGLG00000040703) #12	SMCO1 (ENSHGLG00000019212) #13	RNF168 (ENSHGLG00000033078) #15	ENSHGLG00000048283	UBXN7 (ENSHGLG00000013332) #16	TM4SF19 (ENSHGLG00000013007) #17	ENSHGLG00000012816 #18	PCYT1A (ENSHGLG00000046200) #19	ENSHGLG00000043456	SLC51A (ENSHGLG00000019258) #20	ZDHHC19 (ENSHGLG00000017180) #21	Tfrc (ENSHGLG00000017167) #22	TNK2 (ENSHGLG00000017162) #23	ENSHGLG00000047329 #24	ENSHGLG00000025225 #25	ENSHGLG00000017149 #26	ENSHGLG00000019355 #27	ENSHGLG00000035747	LRCH3 (ENSHGLG00000019171) #28	IQCG (ENSHGLG00000018834) #29	RPL35A (ENSHGLG00000046416) ##30	ENSHGLG00000014676 #32	ENSHGLG00000014650	ENSHGLG00000041896	ENSHGLG00000014589	ATP11B (ENSHGLG00000014553)	SOX2 (ENSHGLG00000046210)
Lagomorpha	ANCESTRAL SPECIES	9	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.j.a.b.b ##30	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00910000147747	ENSGT00940000154419.b
Rabbit	MODERN SPECIES	5	SENP5 (ENSOCUG00000014124)	PAK2 (ENSOCUG00000008224)	ENSOCUG00000012329 #7	CEP19 (ENSOCUG00000016979) #8	NRROS (ENSOCUG00000025238) #9	FBXO45 (ENSOCUG00000012323) #11	WDR53 (ENSOCUG00000027318) #12	SMCO1 (ENSOCUG00000021380) #13	RNF168 (ENSOCUG00000012315) #15	ENSOCUG00000012301	TM4SF19 (ENSOCUG00000005432) #17	DYNLT2B (ENSOCUG00000024562) #18	PCYT1A (ENSOCUG00000000123) #19	SLC51A (ENSOCUG00000000119) #20	ZDHHC19 (ENSOCUG00000030094) #21	TFRC (ENSOCUG00000017033) #22	TNK2 (ENSOCUG00000008686) #23	RUBCN (ENSOCUG00000012754) #26	FYTTD1 (ENSOCUG00000012770) #27	LRCH3 (ENSOCUG00000012777) #28	IQCG (ENSOCUG00000001229) #29	ENSOCUG00000001232 ##30	LMLN (ENSOCUG00000001233) #32	OSBPL11 (ENSOCUG00000009660) #33	SNX4 (ENSOCUG00000015447) #34	ZNF148 (ENSOCUG00000029362) #35	SLC12A8 (ENSOCUG00000027393) #36	HEG1 (ENSOCUG00000014625) #37	ENSOCUG00000030671	ENSOCUG00000014614	ITGB5 (ENSOCUG00000014602)
Pika	MODERN SPECIES	1555																TFRC (ENSOPRG00000015997) #22	TNK2 (ENSOPRG00000015951) #23
Tree shrew	MODERN SPECIES	2246																TFRC (ENSTBEG00000011964) #22	TNK2 (ENSTBEG00000011720) #23
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Xenarthra	ANCESTRAL SPECIES	16	ENSGT00390000003197.i.a	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b	ENSGT01090000259987.b.b.a.b
Sloth	MODERN SPECIES	6384																TFRC (ENSCHOG00000007093) #22
Armadillo	MODERN SPECIES	2286	PIGX (ENSDNOG00000039912) #7	CEP19 (ENSDNOG00000045581) #8	NRROS (ENSDNOG00000015836) #9	FBXO45 (ENSDNOG00000008606) #11	WDR53 (ENSDNOG00000045087) #12	SMCO1 (ENSDNOG00000046880) #13	RNF168 (ENSDNOG00000045513) #15	ENSDNOG00000041038	ENSDNOG00000011804	TM4SF19 (ENSDNOG00000019059) #17	DYNLT2B (ENSDNOG00000031908) #18	PCYT1A (ENSDNOG00000042276) #19	SLC51A (ENSDNOG00000049607) #20	ZDHHC19 (ENSDNOG00000013562) #21	ENSDNOG00000006913	TFRC (ENSDNOG00000003263) #22	TNK2 (ENSDNOG00000035045) #23	ENSDNOG00000036250 #24	ENSDNOG00000014117 #25	RUBCN (ENSDNOG00000030963) #26	FYTTD1 (ENSDNOG00000040247) #27	LRCH3 (ENSDNOG00000001253) #28	IQCG (ENSDNOG00000001256) #29	LMLN (ENSDNOG00000045591) #32	OSBPL11 (ENSDNOG00000024690) #33	SNX4 (ENSDNOG00000011073) #34	ZNF148 (ENSDNOG00000000280) #35	SLC12A8 (ENSDNOG00000024925) #36	HEG1 (ENSDNOG00000010820) #37	ENSDNOG00000034032	ITGB5 (ENSDNOG00000035121)
Afrotheria	ANCESTRAL SPECIES	17	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Afrotheria_a	ANCESTRAL SPECIES	16	ENSGT00940000159865	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a.rb #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00730000111453 #25	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.a.a.a #30	ENSGT00390000008796 #32	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37	ENSGT00940000154419.b
Elephant	MODERN SPECIES	261	SENP5 (ENSLAFG00000032334)	PAK2 (ENSLAFG00000006761)	PIGX (ENSLAFG00000008337) #7	CEP19 (ENSLAFG00000008335) #8	NRROS (ENSLAFG00000001046) #9	FBXO45 (ENSLAFG00000015751) #11	WDR53 (ENSLAFG00000010868) #12	SMCO1 (ENSLAFG00000028808) #13	ENSLAFG00000010864 #15	UBXN7 (ENSLAFG00000011525) #16	TM4SF19 (ENSLAFG00000011521) #17	DYNLT2B (ENSLAFG00000020611) #18	PCYT1A (ENSLAFG00000012721) #19	SLC51A (ENSLAFG00000012715) #20	ZDHHC19 (ENSLAFG00000031531) #21	TFRC (ENSLAFG00000002009) #22	TNK2 (ENSLAFG00000005804) #23	ENSLAFG00000029732 #24	ENSLAFG00000008801 #25	RUBCN (ENSLAFG00000017195) #26	FYTTD1 (ENSLAFG00000017209) #27	LRCH3 (ENSLAFG00000001381) #28	IQCG (ENSLAFG00000001384) #29	ENSLAFG00000027494 ##30	LMLN (ENSLAFG00000007857) #32	OSBPL11 (ENSLAFG00000023046) #33	SNX4 (ENSLAFG00000007423) #34	ZNF148 (ENSLAFG00000016025) #35	SLC12A8 (ENSLAFG00000022977) #36	ENSLAFG00000002395 #37	ENSLAFG00000001737
Hyrax	MODERN SPECIES	6042																TFRC (ENSPCAG00000013172) #22
Tenrec	MODERN SPECIES	15016																TFRC (ENSETEG00000011389) #22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000008796 #32	ENSGT00390000003114.e.b.a	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000008796 #32	ENSGT00390000003114.e.b.a	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Diprotodontia	ANCESTRAL SPECIES	23	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.g ##30	ENSGT00390000008796 #32	ENSGT00390000003114.e.b.a	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Diprotodontia_a	ANCESTRAL SPECIES	24	ENSGT00530000063816.d	ENSGT00950000182988.a.a	ENSGT00390000017679 #7	ENSGT00390000016356 #8	ENSGT00940000157975 #9	ENSGT01030000234629.D #11	ENSGT00390000011073 #12	ENSGT00390000010564 #13	ENSGT00940000153680.a #15	ENSGT00390000018687 #16	ENSGT01030000234590.A.a.a #17	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b.g ##30	ENSGT00390000008796 #32	ENSGT00390000003114.e.b.a	ENSGT00940000158398 #33	ENSGT00930000151029 #34	ENSGT00940000157406 #35	ENSGT00940000160130 #36	ENSGT00710000106813.A #37
Common wonbat	MODERN SPECIES	1139	ENSVURG00010007957	ENSVURG00010007953	PAK2 (ENSVURG00010007934)	PIGX (ENSVURG00010007925) #7	CEP19 (ENSVURG00010007914) #8	NRROS (ENSVURG00010007903) #9	FBXO45 (ENSVURG00010007892) #11	WDR53 (ENSVURG00010007886) #12	RNF168 (ENSVURG00010007878) #15	UBXN7 (ENSVURG00010007856) #16	ENSVURG00010007843 #17	DYNLT2B (ENSVURG00010007833) #18	PCYT1A (ENSVURG00010007821) #19	SLC51A (ENSVURG00010007812) #20	ENSVURG00010007793 #21	TFRC (ENSVURG00010007776) #22	TNK2 (ENSVURG00010007734) #23	ENSVURG00010007707	ENSVURG00010007402 #24	ENSVURG00010007357	ENSVURG00010007348	RUBCN (ENSVURG00010007282) #26	FYTTD1 (ENSVURG00010007269) #27	LRCH3 (ENSVURG00010007198) #28	IQCG (ENSVURG00010007176) #29	ENSVURG00010007167 ##30	LMLN (ENSVURG00010007075) #32	ENSVURG00010007037	OSBPL11 (ENSVURG00010007016) #33	ENSVURG00010007009 #34	ZNF148 (ENSVURG00010006931) #35
koala	MODERN SPECIES	23	ENSPCIG00000018641	PAK2 (ENSPCIG00000018650)	ENSPCIG00000018675 #7	CEP19 (ENSPCIG00000018679) #8	NRROS (ENSPCIG00000018682) #9	FBXO45 (ENSPCIG00000018685) #11	WDR53 (ENSPCIG00000018686) #12	SMCO1 (ENSPCIG00000018687) #13	ENSPCIG00000018690 #15	ENSPCIG00000018692	TM4SF19 (ENSPCIG00000018693) #17	ENSPCIG00000032099	SLC51A (ENSPCIG00000018699) #20	PCYT1A (ENSPCIG00000018697) #19	ENSPCIG00000019947 #21	TFRC (ENSPCIG00000019941) #22	TNK2 (ENSPCIG00000018703) #23	ENSPCIG00000007429	ENSPCIG00000036364 #24	ENSPCIG00000018708	RUBCN (ENSPCIG00000018710) #26	FYTTD1 (ENSPCIG00000018720) #27	LRCH3 (ENSPCIG00000018724) #28	IQCG (ENSPCIG00000018728) #29	ENSPCIG00000032276 ##30	LMLN (ENSPCIG00000018730) #32	ENSPCIG00000018732	ENSPCIG00000018731	ENSPCIG00000036738	OSBPL11 (ENSPCIG00000018734) #33	SNX4 (ENSPCIG00000018735) #34
Wallaby	MODERN SPECIES	8557																ENSMEUG00000006541 #22
Opossum	MODERN SPECIES	3	ENSMODG00000018460	ENSMODG00000018459	ENSMODG00000018455 #7	CEP19 (ENSMODG00000018453) #8	ENSMODG00000018451	NRROS (ENSMODG00000018447) #9	FBXO45 (ENSMODG00000042553) #11	WDR53 (ENSMODG00000018445) #12	SMCO1 (ENSMODG00000046643) #13	RNF168 (ENSMODG00000018442) #15	ENSMODG00000018437	TM4SF19 (ENSMODG00000018434) #17	PCYT1A (ENSMODG00000018432) #19	SLC51A (ENSMODG00000018430) #20	ENSMODG00000018429 #21	TFRC (ENSMODG00000018427) #22	TNK2 (ENSMODG00000018423) #23	ENSMODG00000025059	ENSMODG00000027622	ENSMODG00000018417 #24	POPC1 (ENSMODG00000018409)	RUBCN (ENSMODG00000018402) #26	FYTTD1 (ENSMODG00000018393) #27	LRCH3 (ENSMODG00000018392) #28	IQCG (ENSMODG00000018389) #29	ENSMODG00000018388 ##30	LMLN (ENSMODG00000018387) #32	ENSMODG00000039221	ENSMODG00000018385	ENSMODG00000049192	OSBPL11 (ENSMODG00000018380) #33
Platypus	MODERN SPECIES		LTF (ENSOANG00000011228)	ENSOANG00000051179	PAK2 (ENSOANG00000009204)	ENSOANG00000019945 #7	CEP19 (ENSOANG00000047561) #8	NRROS (ENSOANG00000045010) #9	ENSOANG00000048148 #11	ENSOANG00000040497 #12	ENSOANG00000051116 #13	RNF168 (ENSOANG00000021498) #15	UBXN7 (ENSOANG00000031359) #16	ENSOANG00000050519 #17	PCYT1A (ENSOANG00000044036) #19	SLC51A (ENSOANG00000039164) #20	ZDHHC19 (ENSOANG00000041859) #21	TFRC (ENSOANG00000038776) #22	TNK2 (ENSOANG00000050920) #23	ENSOANG00000009995 #24	ENSOANG00000002707	LRRIQ4 (ENSOANG00000022336)	LRRC34 (ENSOANG00000010324)	MYNN (ENSOANG00000010325)	ACTRT3 (ENSOANG00000051274)	MECOM (ENSOANG00000007585)	GOLIM4 (ENSOANG00000015079)	ENSOANG00000015080	ENSOANG00000040535	ENSOANG00000015083	SERPINI1 (ENSOANG00000015085)	PDCD10 (ENSOANG00000010996)	WDR49 (ENSOANG00000013743)
Sauria	ANCESTRAL SPECIES	9	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000162454	ENSGT00390000013662	ENSGT00940000164175.a.a	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT01030000235136	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00390000014757.h	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000162454	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT01030000235136	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1248	CCDC50 (ENSSPUG00000010663)	OSTN (ENSSPUG00000010683)	IL1RAP (ENSSPUG00000010720)	CLDN16 (ENSSPUG00000010738)	CLDN1 (ENSSPUG00000010759)	P3H2 (ENSSPUG00000010809)	TP63 (ENSSPUG00000010988)	TPRG1 (ENSSPUG00000011036)	LPP (ENSSPUG00000011048)	BCL6 (ENSSPUG00000011070)	SST (ENSSPUG00000011104)	MASP1 (ENSSPUG00000011118)	DYNLT2B (ENSSPUG00000011138) #18	PCYT1A (ENSSPUG00000011155) #19	SLC51A (ENSSPUG00000011183) #20	ENSSPUG00000011245 #22	ENSSPUG00000011734 #22	ENSSPUG00000012421	ENSSPUG00000012429 #23	ENSSPUG00000012444	ENSSPUG00000012463	RUBCN (ENSSPUG00000012486) #26	FYTTD1 (ENSSPUG00000012549) #27	LRCH3 (ENSSPUG00000012579) #28	IQCG (ENSSPUG00000012714) #29	ENSSPUG00000012977 ##30	SMIM20 (ENSSPUG00000012981)	SEL1L3 (ENSSPUG00000013017)	ENSSPUG00000013223	ANAPC4 (ENSSPUG00000013251)	ZCCHC4 (ENSSPUG00000013292)
tuatara	MODERN SPECIES	1248	OSTN (ENSSPUG00000010683)	IL1RAP (ENSSPUG00000010720)	CLDN16 (ENSSPUG00000010738)	CLDN1 (ENSSPUG00000010759)	P3H2 (ENSSPUG00000010809)	TP63 (ENSSPUG00000010988)	TPRG1 (ENSSPUG00000011036)	LPP (ENSSPUG00000011048)	BCL6 (ENSSPUG00000011070)	SST (ENSSPUG00000011104)	MASP1 (ENSSPUG00000011118)	DYNLT2B (ENSSPUG00000011138) #18	PCYT1A (ENSSPUG00000011155) #19	SLC51A (ENSSPUG00000011183) #20	ENSSPUG00000011245 #22	ENSSPUG00000011734 #22	ENSSPUG00000012421	ENSSPUG00000012429 #23	ENSSPUG00000012444	ENSSPUG00000012463	RUBCN (ENSSPUG00000012486) #26	FYTTD1 (ENSSPUG00000012549) #27	LRCH3 (ENSSPUG00000012579) #28	IQCG (ENSSPUG00000012714) #29	ENSSPUG00000012977 ##30	SMIM20 (ENSSPUG00000012981)	SEL1L3 (ENSSPUG00000013017)	ENSSPUG00000013223	ANAPC4 (ENSSPUG00000013251)	ZCCHC4 (ENSSPUG00000013292)	ENSSPUG00000013365
Episquamata	ANCESTRAL SPECIES	22	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00390000014757.h	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000162454	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT01030000235136	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Laterata	ANCESTRAL SPECIES	40	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00390000014757.h	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000162454	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a	ENSGT00390000000263	ENSGT00940000157155.a
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	76	P3H2 (ENSSMRG00000016376)	TP63 (ENSSMRG00000016388)	ENSSMRG00000016389	TPRG1 (ENSSMRG00000016391)	LPP (ENSSMRG00000016392)	ENSSMRG00000016393	BCL6 (ENSSMRG00000016394)	ENSSMRG00000016395	SST (ENSSMRG00000016396)	MASP1 (ENSSMRG00000016397)	ENSSMRG00000016398	DYNLT2B (ENSSMRG00000016401) #18	PCYT1A (ENSSMRG00000016402) #19	SLC51A (ENSSMRG00000016404) #20	ZDHHC19 (ENSSMRG00000016405) #21	ENSSMRG00000016407 #22	ENSSMRG00000016472 #22	ENSSMRG00000016475	ENSSMRG00000016476
Argentine black and white tegu	MODERN SPECIES	76	TP63 (ENSSMRG00000016388)	ENSSMRG00000016389	TPRG1 (ENSSMRG00000016391)	LPP (ENSSMRG00000016392)	ENSSMRG00000016393	BCL6 (ENSSMRG00000016394)	ENSSMRG00000016395	SST (ENSSMRG00000016396)	MASP1 (ENSSMRG00000016397)	ENSSMRG00000016398	DYNLT2B (ENSSMRG00000016401) #18	PCYT1A (ENSSMRG00000016402) #19	SLC51A (ENSSMRG00000016404) #20	ZDHHC19 (ENSSMRG00000016405) #21	ENSSMRG00000016407 #22	ENSSMRG00000016472 #22	ENSSMRG00000016475	ENSSMRG00000016476
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000023185	ENSPMRG00000023190	ENSPMRG00000023198	BCL6 (ENSPMRG00000023209)	ENSPMRG00000023218	ENSPMRG00000023225	ENSPMRG00000023229	MASP1 (ENSPMRG00000023235)	ENSPMRG00000023251	ENSPMRG00000023258	ENSPMRG00000023265	DYNLT2B (ENSPMRG00000023270) #18	PCYT1A (ENSPMRG00000023280) #19	SLC51A (ENSPMRG00000023285) #20	ZDHHC19 (ENSPMRG00000023289) #21	TFRC (ENSPMRG00000005260) #22	ENSPMRG00000005279	ENSPMRG00000005325	ENSPMRG00000005335	ENSPMRG00000005338 #27	LRCH3 (ENSPMRG00000005366) #28	ENSPMRG00000005441 #27	IQCG (ENSPMRG00000005474) #29	ENSPMRG00000005483 ##30	PSMD1 (ENSPMRG00000005488)	HTR2B (ENSPMRG00000005504)	ARMC9 (ENSPMRG00000005515)	B3GNT7 (ENSPMRG00000005557)	ENSPMRG00000005559	ENSPMRG00000005561	ENSPMRG00000005570
Toxicofera	ANCESTRAL SPECIES	47											ENSGT01040000244469	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT01030000235136.c	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Elapidae	ANCESTRAL SPECIES	38	ENSGT00940000158154	ENSGT00940000161593	ENSGT01030000234960.a	ENSGT00940000156442	ENSGT00940000155941.A	ENSGT00940000161771	ENSGT00940000163072	ENSGT00940000159619.a	ENSGT00550000074851	ENSGT00940000159448.g	ENSGT00940000160327.d	ENSGT01040000244469	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00940000166255	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606.d	ENSGT00940000163473
Elapidae_a	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.a #22
Blue-lipped sea krait	MODERN SPECIES	5794																TFRC (ENSLLTG00000008175) #22
Indian cobra	MODERN SPECIES	3	LRRC15 (ENSNNAG00000008793)	CPN2 (ENSNNAG00000008787)	HES1 (ENSNNAG00000008762)	OPA1 (ENSNNAG00000008439)	ENSNNAG00000008403	ENSNNAG00000008055	ENSNNAG00000008016	ATP13A5 (ENSNNAG00000007930)	ENSNNAG00000007880	ENSNNAG00000007852	ENSNNAG00000007822	ENSNNAG00000007802	ENSNNAG00000007746	PCYT1A (ENSNNAG00000007715) #19	SLC51A (ENSNNAG00000007687) #20	TFRC (ENSNNAG00000007555) #22	ENSNNAG00000007444	FYTTD1 (ENSNNAG00000007405) #27	ENSNNAG00000007379 #28	ENSNNAG00000007284	IQCG (ENSNNAG00000007236) #29	ENSNNAG00000007212 ##30	PSMD1 (ENSNNAG00000007060)	ARMC9 (ENSNNAG00000007027)	B3GNT7 (ENSNNAG00000007024)	ENSNNAG00000006933	NMUR1 (ENSNNAG00000006873)	PDE6D (ENSNNAG00000006853)	COPS7B (ENSNNAG00000006827)	ENSNNAG00000006809	ENSNNAG00000006779
Lizard	MODERN SPECIES	1554																ENSACAG00000000423 #22
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606
Aves	ANCESTRAL SPECIES	13	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606
Neognathae	ANCESTRAL SPECIES	9	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606
Anatidae	ANCESTRAL SPECIES	29	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00940000160853 #23	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Pink-footed goose	MODERN SPECIES	106	TMEM207 (ENSABRG00000008551)	CLDN16 (ENSABRG00000008505)	CLDN1 (ENSABRG00000008485)	P3H2 (ENSABRG00000008476)	TP63 (ENSABRG00000008456)	LPP (ENSABRG00000008425)	BCL6 (ENSABRG00000008399)	SST (ENSABRG00000008394)	ENSABRG00000008384	MASP1 (ENSABRG00000008358)	ENSABRG00000008338	ENSABRG00000008331	DYNLT2B (ENSABRG00000008319) #18	PCYT1A (ENSABRG00000008308) #19	SLC51A (ENSABRG00000008236) #20	TFRC (ENSABRG00000008217) #22	TNK2 (ENSABRG00000008180) #23	ENSABRG00000008134 #24	ENSABRG00000008050	RUBCN (ENSABRG00000008013) #26	FYTTD1 (ENSABRG00000007936) #27	LRCH3 (ENSABRG00000007849) #28	IQCG (ENSABRG00000007814) #29	RPL35A (ENSABRG00000007803) ##30	ENSABRG00000007796	HTR2B (ENSABRG00000007787)	PSMD1 (ENSABRG00000007185)	ARMC9 (ENSABRG00000007023)	B3GNT7 (ENSABRG00000007000)	ENSABRG00000006985	NMUR1 (ENSABRG00000006972)
Duck	MODERN SPECIES	27	TMEM207 (ENSAPLG00000013691)	CLDN16 (ENSAPLG00000013664)	CLDN1 (ENSAPLG00000013457)	P3H2 (ENSAPLG00000013236)	TP63 (ENSAPLG00000012917)	LPP (ENSAPLG00000012796)	BCL6 (ENSAPLG00000015868)	SST (ENSAPLG00000019657)	ENSAPLG00000025648	MASP1 (ENSAPLG00000015691)	ENSAPLG00000023211	ENSAPLG00000003601	DYNLT2B (ENSAPLG00000003527) #18	PCYT1A (ENSAPLG00000003305) #19	SLC51A (ENSAPLG00000027071) #20	TFRC (ENSAPLG00000002774) #22	ENSAPLG00000024440	ENSAPLG00000010743 #24	RUBCN (ENSAPLG00000028807) #26	FYTTD1 (ENSAPLG00000015624) #27	LRCH3 (ENSAPLG00000015330) #28	ENSAPLG00000019055 #29	RPL35A (ENSAPLG00000024971) ##30	HTR2B (ENSAPLG00000015179)	PSMD1 (ENSAPLG00000013690)	ARMC9 (ENSAPLG00000013385)	B3GNT7 (ENSAPLG00000013348)	ENSAPLG00000012897	NMUR1 (ENSAPLG00000020858)	PDE6D (ENSAPLG00000012446)	COPS7B (ENSAPLG00000012548)
Phasianidae	ANCESTRAL SPECIES	9	ENSGT01090000260076.a	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Japanese quail	MODERN SPECIES	27	IL1RAP (ENSCJPG00005013571)	TMEM207 (ENSCJPG00005013575)	CLDN16 (ENSCJPG00005013577)	CLDN1 (ENSCJPG00005013579)	P3H2 (ENSCJPG00005013583)	TP63 (ENSCJPG00005013585)	LPP (ENSCJPG00005013592)	BCL6 (ENSCJPG00005013599)	SST (ENSCJPG00005013600)	MASP1 (ENSCJPG00005013601)	ENSCJPG00005013603	ENSCJPG00005013604	DYNLT2B (ENSCJPG00005013605) #18	PCYT1A (ENSCJPG00005013606) #19	SLC51A (ENSCJPG00005013607) #20	TFRC (ENSCJPG00005013608) #22	ENSCJPG00005013610	ENSCJPG00005013611 #24	ENSCJPG00005013614	RUBCN (ENSCJPG00005013615) #26	FYTTD1 (ENSCJPG00005013617) #27	LRCH3 (ENSCJPG00005013618) #28	IQCG (ENSCJPG00005013621) #29	RPL35A (ENSCJPG00005013623) ##30	ENSCJPG00005013624	PSMD1 (ENSCJPG00005013625)	HTR2B (ENSCJPG00005013627)	ARMC9 (ENSCJPG00005013632)	B3GNT7 (ENSCJPG00005013706)	ENSCJPG00005013707	NMUR1 (ENSCJPG00005013715)
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT01090000260076.a	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Chicken	MODERN SPECIES	38	IL1RAP (ENSGALG00010014572)	TMEM207 (ENSGALG00010014596)	CLDN16 (ENSGALG00010014643)	CLDN1 (ENSGALG00010013646)	P3H2 (ENSGALG00010017579)	TP63 (ENSGALG00010014867)	LPP (ENSGALG00010014984)	BCL6 (ENSGALG00010013635)	SST1 (ENSGALG00010013624)	MASP1 (ENSGALG00010013820)	ENSGALG00010017527	PDCD1 (ENSGALG00010014912)	DYNLT2B (ENSGALG00010014916) #18	PCYT1A (ENSGALG00010014935) #19	SLC51A (ENSGALG00010014970) #20	TFRC (ENSGALG00010015029) #22	TNK2 (ENSGALG00010015146)	ENSGALG00010015159 #24	ENSGALG00010015199	RUBCN (ENSGALG00010015213) #26	FYTTD1 (ENSGALG00010015227) #27	ENSGALG00010015241	ENSGALG00010015253	IQCG (ENSGALG00010015261) #29	RPL35A (ENSGALG00010015296) ##30	ENSGALG00010015328	ENSGALG00010015343	PSMD1 (ENSGALG00010015388)	HTR2B (ENSGALG00010015410)	ARMC9 (ENSGALG00010015477)	B3GNT7 (ENSGALG00010015563)
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT01090000260076.a	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT01090000263360	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Golden eagle	MODERN SPECIES	1	CLDN16 (ENSACCG00020000869)	CLDN1 (ENSACCG00020000847)	ENSACCG00020000829	P3H2 (ENSACCG00020000774)	TP63 (ENSACCG00020000594)	LPP (ENSACCG00020000459)	BCL6 (ENSACCG00020000423)	SST (ENSACCG00020000401)	ENSACCG00020000387	MASP1 (ENSACCG00020004571)	ENSACCG00020004564	ENSACCG00020004556	DYNLT2B (ENSACCG00020004550) #18	PCYT1A (ENSACCG00020004544) #19	SLC51A (ENSACCG00020004535) #20	TFRC (ENSACCG00020004521) #22	ENSACCG00020004489	ENSACCG00020004442	ENSACCG00020004430 #24	ENSACCG00020004402	RUBCN (ENSACCG00020004377) #26	FYTTD1 (ENSACCG00020004350) #27	LRCH3 (ENSACCG00020004332) #28	ENSACCG00020004302 #29	RPL35A (ENSACCG00020004292) ##30	ENSACCG00020004288	HTR2B (ENSACCG00020004282)	PSMD1 (ENSACCG00020004267)	ARMC9 (ENSACCG00020004253)	B3GNT7 (ENSACCG00020004235)	ENSACCG00020004191
Kakapo	MODERN SPECIES	25	OSTN (ENSSHBG00005013354)	GMNC (ENSSHBG00005013346)	IL1RAP (ENSSHBG00005013330)	CLDN16 (ENSSHBG00005013318)	CLDN1 (ENSSHBG00005013311)	P3H2 (ENSSHBG00005012583)	TP63 (ENSSHBG00005012515)	LPP (ENSSHBG00005012495)	BCL6 (ENSSHBG00005012463)	MASP1 (ENSSHBG00005012416)	ENSSHBG00005012399	ENSSHBG00005012087	DYNLT2B (ENSSHBG00005012024) #18	PCYT1A (ENSSHBG00005012004) #19	SLC51A (ENSSHBG00005011993) #20	TFRC (ENSSHBG00005011701) #22	ENSSHBG00005011565	ENSSHBG00005011515	ENSSHBG00005011493	ENSSHBG00005011466	ENSSHBG00005011388	ENSSHBG00005011308	RUBCN (ENSSHBG00005011253) #26	FYTTD1 (ENSSHBG00005011200) #27	LRCH3 (ENSSHBG00005011145) #28	IQCG (ENSSHBG00005011108) #29	RPL35A (ENSSHBG00005011078) ##30	ENSSHBG00005011064	HTR2B (ENSSHBG00005011035)	PSMD1 (ENSSHBG00005010987)	ARMC9 (ENSSHBG00005010422)
Passeriformes	ANCESTRAL SPECIES	9	ENSGT01090000260076.a	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT01090000260076.a	ENSGT00390000006126	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00940000153270.b.b	ENSGT01090000260076.a	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Medium ground finch	MODERN SPECIES	12	GMNC (ENSGFOG00000012625)	IL1RAP (ENSGFOG00000012627)	CLDN16 (ENSGFOG00000012633)	CLDN1 (ENSGFOG00000012636)	P3H2 (ENSGFOG00000012640)	TP63 (ENSGFOG00000012652)	LPP (ENSGFOG00000012660)	BCL6 (ENSGFOG00000012671)	SST (ENSGFOG00000012674)	MASP1 (ENSGFOG00000012678)	ENSGFOG00000012685	ENSGFOG00000012689	DYNLT2B (ENSGFOG00000012691) #18	PCYT1A (ENSGFOG00000012698) #19	SLC51A (ENSGFOG00000012701) #20	TFRC (ENSGFOG00000012705) #22	ENSGFOG00000012711	RUBCN (ENSGFOG00000012735) #26	FYTTD1 (ENSGFOG00000012750) #27	LRCH3 (ENSGFOG00000012767) #28	IQCG (ENSGFOG00000012782) #29	RPL35A (ENSGFOG00000012790) ##30	PSMD1 (ENSGFOG00000012806)	HTR2B (ENSGFOG00000012958)	ARMC9 (ENSGFOG00000012964)	B3GNT7 (ENSGFOG00000012987)	ENSGFOG00000012991	NMUR1 (ENSGFOG00000013002)	PDE6D (ENSGFOG00000013006)	COPS7B (ENSGFOG00000013010)	DIS3L2 (ENSGFOG00000013017)
Passeroidea	ANCESTRAL SPECIES	13	ENSGT00940000153270.b.b	ENSGT01090000260076.a	ENSGT00730000111162	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473
Zebra finch	MODERN SPECIES	31	OSTN (ENSTGUG00000009282)	GMNC (ENSTGUG00000022630)	IL1RAP (ENSTGUG00000009300)	CLDN16 (ENSTGUG00000009324)	CLDN1 (ENSTGUG00000028279)	P3H2 (ENSTGUG00000009345)	TP63 (ENSTGUG00000009377)	LPP (ENSTGUG00000009408)	BCL6 (ENSTGUG00000009413)	SST (ENSTGUG00000027783)	MASP1 (ENSTGUG00000009433)	ENSTGUG00000009473	ENSTGUG00000021367	PCYT1A (ENSTGUG00000009486) #19	SLC51A (ENSTGUG00000009499) #20	TFRC (ENSTGUG00000009510) #22	ENSTGUG00000009557	ENSTGUG00000009581 #24	ENSTGUG00000009601	RUBCN (ENSTGUG00000009610) #26	FYTTD1 (ENSTGUG00000009645) #27	LRCH3 (ENSTGUG00000009649) #28	IQCG (ENSTGUG00000009672) #29	RPL35A (ENSTGUG00000009679) ##30	ENSTGUG00000009696	ENSTGUG00000027999	PSMD1 (ENSTGUG00000009697)	HTR2B (ENSTGUG00000009753)	ARMC9 (ENSTGUG00000009761)	ENSTGUG00000009782	NMUR1 (ENSTGUG00000009793)
Common canary	MODERN SPECIES	10	IL1RAP (ENSSCAG00000015011)	CLDN16 (ENSSCAG00000015003)	CLDN1 (ENSSCAG00000014998)	ENSSCAG00000014997	P3H2 (ENSSCAG00000014959)	TP63 (ENSSCAG00000014949)	LPP (ENSSCAG00000014917)	BCL6 (ENSSCAG00000014898)	SST (ENSSCAG00000014894)	MASP1 (ENSSCAG00000014883)	ENSSCAG00000014878	ENSSCAG00000014875	DYNLT2B (ENSSCAG00000014873) #18	PCYT1A (ENSSCAG00000014869) #19	SLC51A (ENSSCAG00000014862) #20	TFRC (ENSSCAG00000014855) #22	ENSSCAG00000014838	ENSSCAG00000014811 #24	ENSSCAG00000014803	RUBCN (ENSSCAG00000014768) #26	FYTTD1 (ENSSCAG00000014741) #27	LRCH3 (ENSSCAG00000014729) #28	IQCG (ENSSCAG00000014693) #29	RPL35A (ENSSCAG00000014685) ##30	ENSSCAG00000014682	HTR2B (ENSSCAG00000014680)	PSMD1 (ENSSCAG00000014663)	ARMC9 (ENSSCAG00000014642)	B3GNT7 (ENSSCAG00000014633)	ENSSCAG00000014452	NMUR1 (ENSSCAG00000014429)
Flycatcher	MODERN SPECIES	28	IL1RAP (ENSFALG00000007337)	TMEM207 (ENSFALG00000025097)	CLDN16 (ENSFALG00000007345)	CLDN1 (ENSFALG00000024040)	P3H2 (ENSFALG00000007377)	TP63 (ENSFALG00000007393)	LPP (ENSFALG00000007400)	BCL6 (ENSFALG00000007407)	SST (ENSFALG00000007412)	ENSFALG00000007423	ENSFALG00000022960	ENSFALG00000007437	ENSFALG00000007441	PCYT1A (ENSFALG00000007448) #19	SLC51A (ENSFALG00000007454) #20	TFRC (ENSFALG00000007464) #22	ENSFALG00000007476	ENSFALG00000007481 #24	ENSFALG00000007495	RUBCN (ENSFALG00000007498) #26	FYTTD1 (ENSFALG00000007503) #27	LRCH3 (ENSFALG00000007519) #28	IQCG (ENSFALG00000007536) #29	RPL35A (ENSFALG00000027137) ##30	ENSFALG00000028402	PSMD1 (ENSFALG00000007554)	HTR2B (ENSFALG00000007557)	ARMC9 (ENSFALG00000007568)	B3GNT7 (ENSFALG00000015291)	ENSFALG00000007592	NMUR1 (ENSFALG00000007616)
Great tit	MODERN SPECIES	29	IL1RAP (ENSPMJG00000019557)	TMEM207 (ENSPMJG00000019560)	CLDN16 (ENSPMJG00000019562)	CLDN1 (ENSPMJG00000019563)	P3H2 (ENSPMJG00000019564)	TP63 (ENSPMJG00000019566)	LPP (ENSPMJG00000019572)	BCL6 (ENSPMJG00000019584)	SST (ENSPMJG00000019586)	MASP1 (ENSPMJG00000019589)	ENSPMJG00000019590	ENSPMJG00000019596	DYNLT2B (ENSPMJG00000019597) #18	PCYT1A (ENSPMJG00000019598) #19	SLC51A (ENSPMJG00000019599) #20	TFRC (ENSPMJG00000019601) #22	ENSPMJG00000019603	ENSPMJG00000019604 #24	ENSPMJG00000019606	RUBCN (ENSPMJG00000019607) #26	FYTTD1 (ENSPMJG00000019611) #27	LRCH3 (ENSPMJG00000019614) #28	IQCG (ENSPMJG00000019617) #29	RPL35A (ENSPMJG00000019618) ##30	ENSPMJG00000019619	ENSPMJG00000019621	PSMD1 (ENSPMJG00000019622)	HTR2B (ENSPMJG00000019623)	ARMC9 (ENSPMJG00000019626)	B3GNT7 (ENSPMJG00000019633)	ENSPMJG00000000052
African ostrich	MODERN SPECIES	861	CLDN16 (ENSSCUG00000013740)	CLDN1 (ENSSCUG00000013746)	P3H2 (ENSSCUG00000013755)	TP63 (ENSSCUG00000013762)	LPP (ENSSCUG00000013768)	BCL6 (ENSSCUG00000013769)	SST (ENSSCUG00000013770)	ENSSCUG00000013771	MASP1 (ENSSCUG00000013773)	ENSSCUG00000013776	ENSSCUG00000013779	DYNLT2B (ENSSCUG00000013780) #18	PCYT1A (ENSSCUG00000013785) #19	ENSSCUG00000013788	SLC51A (ENSSCUG00000013791) #20	TFRC (ENSSCUG00000013794) #22	ENSSCUG00000013802	ENSSCUG00000013808	ENSSCUG00000013812 #24	ENSSCUG00000013818	RUBCN (ENSSCUG00000013828) #26	FYTTD1 (ENSSCUG00000013842) #27	LRCH3 (ENSSCUG00000013847) #28	IQCG (ENSSCUG00000013851) #29	RPL35A (ENSSCUG00000013855) ##30	ENSSCUG00000013857	PSMD1 (ENSSCUG00000013895)	HTR2B (ENSSCUG00000014005)	ARMC9 (ENSSCUG00000014016)	B3GNT7 (ENSSCUG00000014033)	ENSSCUG00000014037
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Emydidae	ANCESTRAL SPECIES	3	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00960000189439	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Three-toed box turtle	MODERN SPECIES	32	CLDN1 (ENSTMTG00000002012)	P3H2 (ENSTMTG00000002004)	TP63 (ENSTMTG00000001991)	TPRG1 (ENSTMTG00000001987)	LPP (ENSTMTG00000001981)	BCL6 (ENSTMTG00000001970)	SST (ENSTMTG00000001963)	ENSTMTG00000001957	MASP1 (ENSTMTG00000001948)	ENSTMTG00000001935	ENSTMTG00000001932	ENSTMTG00000001918	PCYT1A (ENSTMTG00000001903) #19	SLC51A (ENSTMTG00000001893) #20	ZDHHC19 (ENSTMTG00000001879) #21	TFRC (ENSTMTG00000001864) #22	ENSTMTG00000001839	ENSTMTG00000001820	RUBCN (ENSTMTG00000001789) #26	LRCH3 (ENSTMTG00000001760) #28	IQCG (ENSTMTG00000001713) #29	ENSTMTG00000001692 ##30	ENSTMTG00000001681	ENSTMTG00000001672	HTR2B (ENSTMTG00000001661)	PSMD1 (ENSTMTG00000001637)	ARMC9 (ENSTMTG00000000754)	B3GNT7 (ENSTMTG00000000532)	ENSTMTG00000000478	NMUR1 (ENSTMTG00000000454)	PTMA (ENSTMTG00000000436)
painted turtle	MODERN SPECIES	867												ZDHHC19 (ENSCPBG00000017376) #21	ENSCPBG00000017374	ENSCPBG00000017372	ENSCPBG00000017371	TFRC (ENSCPBG00000017365) #22	ENSCPBG00000017358	ENSCPBG00000017351	RUBCN (ENSCPBG00000017349) #26	FYTTD1 (ENSCPBG00000017348) #27	LRCH3 (ENSCPBG00000017347) #28	IQCG (ENSCPBG00000017346) #29	ENSCPBG00000017345 ##30	ENSCPBG00000017344	ENSCPBG00000017343	HTR2B (ENSCPBG00000017342)	PSMD1 (ENSCPBG00000016505)	ARMC9 (ENSCPBG00000016460)	B3GNT7 (ENSCPBG00000016449)	ENSCPBG00000016444	PDE6D (ENSCPBG00000016438)
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00390000014757.h	ENSGT00950000183084.b.b	ENSGT00940000161858	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a.a	ENSGT00390000013662	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT00950000185941	ENSGT00940000161784 #21	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00390000010302	ENSGT00940000160658 #26	ENSGT00390000012807 #27	ENSGT00940000158330 #28	ENSGT00730000111263 #29	ENSGT00390000016972.b ##30	ENSGT01030000235369.b	ENSGT00390000003006	ENSGT00940000153386.A	ENSGT01050000244937.a.b.b	ENSGT00390000018026	ENSGT00940000157606	ENSGT00940000163473	ENSGT01100000263484.A.c.a.a
Abingdon island giant tortoise	MODERN SPECIES	534	TPRG1 (ENSCABG00000004967)	LPP (ENSCABG00000004965)	BCL6 (ENSCABG00000004960)	SST (ENSCABG00000004956)	ENSCABG00000004954	MASP1 (ENSCABG00000004952)	RTP1 (ENSCABG00000004950)	ENSCABG00000004949	ENSCABG00000004947	ENSCABG00000004945	DYNLT2B (ENSCABG00000004942) #18	PCYT1A (ENSCABG00000004940) #19	SLC51A (ENSCABG00000004937) #20	ENSCABG00000004934	ZDHHC19 (ENSCABG00000004932) #21	TFRC (ENSCABG00000004930) #22	ENSCABG00000004928	ENSCABG00000004925	RUBCN (ENSCABG00000004878) #26	FYTTD1 (ENSCABG00000004863) #27	LRCH3 (ENSCABG00000004855) #28	IQCG (ENSCABG00000004740) #29	ENSCABG00000004736 ##30	ENSCABG00000004733	HTR2B (ENSCABG00000004731)	PSMD1 (ENSCABG00000004728)	ARMC9 (ENSCABG00000004727)	B3GNT7 (ENSCABG00000004725)	ENSCABG00000004720	NMUR1 (ENSCABG00000004718)
Goode s thornscrub tortoise	MODERN SPECIES	23	BCL6 (ENSGEVG00005016685)	SST (ENSGEVG00005016712)	ENSGEVG00005016739	MASP1 (ENSGEVG00005016757)	ENSGEVG00005016834	ENSGEVG00005016904	ENSGEVG00005016951	ENSGEVG00005016979	DYNLT2B (ENSGEVG00005017013) #18	PCYT1A (ENSGEVG00005017034) #19	SLC51A (ENSGEVG00005017054) #20	ENSGEVG00005017088	ZDHHC19 (ENSGEVG00005017115) #21	ENSGEVG00005017162	ENSGEVG00005017240	TFRC (ENSGEVG00005017258) #22	ENSGEVG00005017473	ENSGEVG00005018326 #26	ENSGEVG00005018405	ENSGEVG00005018525 #26	FYTTD1 (ENSGEVG00005018562) #27	LRCH3 (ENSGEVG00005018595) #28	IQCG (ENSGEVG00005018675) #29	RPL35A (ENSGEVG00005018766) ##30	ENSGEVG00005018781	C2orf72 (ENSGEVG00005018789)	PSMD1 (ENSGEVG00005018811)	HTR2B (ENSGEVG00005018868)	ARMC9 (ENSGEVG00005018970)	B3GNT7 (ENSGEVG00005019231)	ENSGEVG00005019240
Chinese turtle	MODERN SPECIES	216								MASP1 (ENSPSIG00000002174)	ENSPSIG00000002196	RTP3 (ENSPSIG00000002197)	ENSPSIG00000002199	ENSPSIG00000002201	DYNLT2B (ENSPSIG00000002203) #18	PCYT1A (ENSPSIG00000002207) #19	SLC51A (ENSPSIG00000002216) #20	TFRC (ENSPSIG00000002226) #22	ENSPSIG00000002268 ##24	ENSPSIG00000001229	ENSPSIG00000002271	ENSPSIG00000002277 #26	ENSPSIG00000002291 #26	FYTTD1 (ENSPSIG00000002293) #27	LRCH3 (ENSPSIG00000002297) #28	IQCG (ENSPSIG00000002309) #29	RPL35A (ENSPSIG00000002311) ##30	PSMD1 (ENSPSIG00000002315)	HTR2B (ENSPSIG00000002318)	ARMC9 (ENSPSIG00000002321)	B3GNT7 (ENSPSIG00000002358)	ENSPSIG00000002361	NMUR1 (ENSPSIG00000002366)
Anura	ANCESTRAL SPECIES	26	ENSGT00940000155387	ENSGT00940000159593	ENSGT00950000183153.c.b.a.a	ENSGT00390000001652.f.b	ENSGT00940000156022.b	ENSGT00940000156311	ENSGT00510000047914.b	ENSGT00950000183084.b.b	ENSGT00940000164175.b	ENSGT00940000164175.a.b	ENSGT00940000164175.a.a.d	ENSGT01070000257277	ENSGT00940000160019 #18	ENSGT00940000157384 #19	ENSGT00940000160780 #20	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT00730000110943.C #24	ENSGT00940000159535	ENSGT00940000156870	ENSGT00390000010302	ENSGT00940000154694	ENSGT00940000166623	ENSGT00940000160041	ENSGT00940000159794	ENSGT00940000157183.b	ENSGT00940000164152	ENSGT00940000157673	ENSGT00950000183063.c.b.a	ENSGT00950000183063.c.b.b	ENSGT00530000063106.A
Frog	MODERN SPECIES	5	sst.1 (ENSXETG00000035728)	ENSXETG00000047712	ENSXETG00000047313	masp1 (ENSXETG00000019757)	rtp3d (ENSXETG00000035697)	rtp3 (ENSXETG00000030759)	rtp3b (ENSXETG00000019753)	rtp3a.3 (ENSXETG00000035970)	ENSXETG00000043886	ENSXETG00000040899	ENSXETG00000043907	ENSXETG00000048508	dynlt2b (ENSXETG00000033152) #18	pcyt1a (ENSXETG00000003079) #19	slc51a (ENSXETG00000003078) #20	tfrcl (ENSXETG00000003077) #22	tnk2 (ENSXETG00000003076)	ENSXETG00000048680 #24	ENSXETG00000047887	muc4 (ENSXETG00000036774)	ENSXETG00000003039	ENSXETG00000048763	ENSXETG00000021751	ENSXETG00000046965	phr (ENSXETG00000033241)	rubcn (ENSXETG00000030994)	mgc89871 (ENSXETG00000027885)	ENSXETG00000038179	chrng (ENSXETG00000013994)	chrnd (ENSXETG00000027884)	prss56 (ENSXETG00000041361)
Leishan spiny toad	MODERN SPECIES	7	SST (ENSLLEG00000010971)	ENSLLEG00000011006	ENSLLEG00000011026	MASP1 (ENSLLEG00000011052)	ENSLLEG00000011124	ENSLLEG00000011163	ENSLLEG00000011190	ENSLLEG00000011215	ENSLLEG00000011240	ENSLLEG00000011274	ENSLLEG00000011304	ENSLLEG00000011424	ENSLLEG00000011435	PCYT1A (ENSLLEG00000011485) #19	SLC51A (ENSLLEG00000011768) #20	TFRC (ENSLLEG00000011878) #22	ENSLLEG00000012372	ENSLLEG00000012914	ENSLLEG00000012927	ENSLLEG00000012953	ENSLLEG00000012974	ENSLLEG00000013007	ENSLLEG00000013125 #24	ENSLLEG00000013311 #24	ENSLLEG00000013647 #24	ENSLLEG00000014003	ENSLLEG00000014029	ENSLLEG00000014112	ENSLLEG00000015094	ENSLLEG00000015255	RUBCN (ENSLLEG00000015300) #26
Coelacanth	MODERN SPECIES	1107												MASP1 (ENSLACG00000011850)	ENSLACG00000011511	DYNLT2B (ENSLACG00000010422) #18	PCYT1A (ENSLACG00000009963) #19	TFRC (ENSLACG00000007864) #22	ENSLACG00000006018	ENSLACG00000000371 #24
Actinopterygii	ANCESTRAL SPECIES	74															ENSGT01090000260902.a	ENSGT01030000234598.a.a.a #22	ENSGT00940000160853 #23	ENSGT00440000033870	ENSGT00390000014309	ENSGT00940000156759	ENSGT00390000001231	ENSGT00940000157867	ENSGT00940000159249	ENSGT00940000153314.b	ENSGT00510000048612	ENSGT00390000017394	ENSGT00390000017402	ENSGT00390000013828	ENSGT00940000158896	ENSGT00940000163190.g.a	ENSGT00560000077335
Neopterygii	ANCESTRAL SPECIES	12															ENSGT00940000177628	ENSGT01030000234598.a.a.a #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b	ENSGT00940000157053.v	ENSGT00940000159828.b	ENSGT00500000045505	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b	ENSGT00510000046981.a	ENSGT00940000167146	ENSGT00940000156456	ENSGT00940000161601	ENSGT00730000111293	ENSGT00940000160075	ENSGT00390000002757
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	300															ENSGT01090000260902.a	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b	ENSGT00940000157053.v	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00940000161601	ENSGT00730000111293
Clupeocephala	ANCESTRAL SPECIES	139	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00980000202837	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00940000161601	ENSGT00730000111293
Otomorpha	ANCESTRAL SPECIES	88	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT01030000234935.d	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000157053.v	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00510000046981.a.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00940000161601	ENSGT00730000111293	ENSGT00940000154964.z
Clupeiformes	ANCESTRAL SPECIES	181											ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000157053.v	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00510000046981.a.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00940000161601	ENSGT00730000111293	ENSGT00940000154964.z	ENSGT00890000139496.b
Denticle herring	MODERN SPECIES	11	mtfr1 (ENSDCDG00000025077)	pde7a (ENSDCDG00000025086)	DNAJC5B (ENSDCDG00000025096)	crhb (ENSDCDG00000025097)	rrs1 (ENSDCDG00000025098)	MYBL1 (ENSDCDG00000025100)	sgk3 (ENSDCDG00000025111)	TCF24 (ENSDCDG00000025428)	ppp1r42 (ENSDCDG00000025431)	chrnd (ENSDCDG00000025509)	camk2n2 (ENSDCDG00000026634)	KLHL24 (ENSDCDG00000026635)	SH3KBP1 (ENSDCDG00000026636)	MAP3K15 (ENSDCDG00000026641)	ccl20b (ENSDCDG00000026716)	tfr1b (ENSDCDG00000026723) #22	ENSDCDG00000026728	ENSDCDG00000026741	ENSDCDG00000026746	ENSDCDG00000026747	ENSDCDG00000026752	ENSDCDG00000000165	ENSDCDG00000000258	eif1axb (ENSDCDG00000000345)	ENSDCDG00000000360	ENSDCDG00000000385	ENSDCDG00000000416	zgc:112408 (ENSDCDG00000000429)	ENSDCDG00000000433	ENSDCDG00000000436	chodl (ENSDCDG00000000440)
Atlantic herring	MODERN SPECIES	8	ENSCHAG00000000524	ENSCHAG00000000632	ENSCHAG00000000713	nrbp2b (ENSCHAG00000000970)	xylb (ENSCHAG00000001507)	acvr2ba (ENSCHAG00000005635)	EXOG (ENSCHAG00000006636)	scn5lab (ENSCHAG00000006779)	ENSCHAG00000012130	ENSCHAG00000012139	ENSCHAG00000012266	wdr48a (ENSCHAG00000012331)	gorasp1b (ENSCHAG00000013819)	ENSCHAG00000013946	ENSCHAG00000013966	tfr1b (ENSCHAG00000013989) #22	TNK2 (ENSCHAG00000014135) #23	tmtopsb (ENSCHAG00000014194)	adipoqa (ENSCHAG00000014334)	and1 (ENSCHAG00000014386)	cops9 (ENSCHAG00000014427)	otos (ENSCHAG00000014436)	apodb (ENSCHAG00000014447)	ENSCHAG00000014480	mynn (ENSCHAG00000014496)	LRRC34 (ENSCHAG00000014506)	ENSCHAG00000014513	ENSCHAG00000014557	skilb (ENSCHAG00000014599)	ENSCHAG00000014635	cldn11b (ENSCHAG00000014706)
Otophysi	ANCESTRAL SPECIES	47	ENSGT00940000163670.a.a	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT01030000234935.d	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00940000162952.d.b.b.b	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT01030000234935.d	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.c	ENSGT00940000162424.d	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00940000162952.d.b.b.b	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.a.b.a
Characiphysae_b	ANCESTRAL SPECIES	51	ENSGT00940000163670.a.a	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT01030000234935.d	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.c	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000157053.v	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00940000162952.d.b.b.b	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509
Characoidei	ANCESTRAL SPECIES	14	ENSGT00940000163670.a.a	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT01030000234935.d	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.c	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00940000162952.d.b.b.b	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.a.b.a
Red-bellied piranha	MODERN SPECIES	350													ENSPNAG00000000802	MAP3K15 (ENSPNAG00000008306)	ccl20b (ENSPNAG00000000895)	tfr1b (ENSPNAG00000000906) #22	TNK2 (ENSPNAG00000000949) #23	tmtopsb (ENSPNAG00000008408)	and1 (ENSPNAG00000000977)	cops9 (ENSPNAG00000008416)	otos (ENSPNAG00000000988)	apodb (ENSPNAG00000008424)	mynn (ENSPNAG00000008439)	ENSPNAG00000001011	ENSPNAG00000008448	skilb (ENSPNAG00000001030)	zgc:194621 (ENSPNAG00000001036)	ENSPNAG00000008510	cldn11b (ENSPNAG00000001065)	ENSPNAG00000001070	rpl22l1 (ENSPNAG00000001081)
Mexicana tetra	MODERN SPECIES	18	GABRR3 (ENSAMXG00000007933)	ENSAMXG00000033828	ENSAMXG00000038897	PTCHD1 (ENSAMXG00000007995)	phex (ENSAMXG00000038369)	mbtps2 (ENSAMXG00000037219)	smpx (ENSAMXG00000040348)	KLHL34 (ENSAMXG00000040891)	CNKSR2 (ENSAMXG00000008052)	chrnd (ENSAMXG00000008070)	camk2n2 (ENSAMXG00000008091)	KLHL24 (ENSAMXG00000008094)	ENSAMXG00000008098	MAP3K15 (ENSAMXG00000008102)	ccl20b (ENSAMXG00000038690)	tfr1b (ENSAMXG00000035010) #22	ENSAMXG00000035956	ENSAMXG00000032730 #23	ENSAMXG00000036565	tmtopsb (ENSAMXG00000016913)	ENSAMXG00000030359	ENSAMXG00000032798	and1 (ENSAMXG00000036956)	cops9 (ENSAMXG00000008168)	ENSAMXG00000043804	otos (ENSAMXG00000029588)	apodb (ENSAMXG00000008186)	mynn (ENSAMXG00000008196)	ENSAMXG00000008211	ENSAMXG00000004256	skilb (ENSAMXG00000004207)
Electric eel	MODERN SPECIES	116	boc (ENSEEEG00000022199)	USF3 (ENSEEEG00000022198)	naa50 (ENSEEEG00000022195)	ATP6V1A (ENSEEEG00000022193)	smpx (ENSEEEG00000022192)	KLHL34 (ENSEEEG00000022191)	ENSEEEG00000022190	CNKSR2 (ENSEEEG00000022187)	chrnd (ENSEEEG00000022123)	camk2n2 (ENSEEEG00000022116)	KLHL24 (ENSEEEG00000022115)	ENSEEEG00000022114	ENSEEEG00000022111	MAP3K15 (ENSEEEG00000022107)	ccl20b (ENSEEEG00000022105)	tfr1b (ENSEEEG00000022101) #22	ENSEEEG00000022099 #23	ST6GAL1 (ENSEEEG00000022094)	and1 (ENSEEEG00000022093)	cops9 (ENSEEEG00000022092)	otos (ENSEEEG00000022091)	apodb (ENSEEEG00000022085)	mynn (ENSEEEG00000022084)	LRRC34 (ENSEEEG00000022083)	skilb (ENSEEEG00000022080)	ENSEEEG00000022078	ENSEEEG00000022076	cldn11b (ENSEEEG00000022073)	ENSEEEG00000022062	rpl22l1 (ENSEEEG00000022057)	eif5a (ENSEEEG00000022053)
Channel catfish	MODERN SPECIES	15	ENSIPUG00000016115	ENSIPUG00000016139	ptchd1 (ENSIPUG00000016167)	phex (ENSIPUG00000016188)	mbtps2 (ENSIPUG00000016241)	Smpx (ENSIPUG00000016282)	ENSIPUG00000016302	CNKSR2 (ENSIPUG00000016310)	chrnd (ENSIPUG00000016357)	camk2n2 (ENSIPUG00000016447)	KLHL24 (ENSIPUG00000016456)	sh3kbp1 (ENSIPUG00000016479)	map3k15 (ENSIPUG00000016562)	ccl20b (ENSIPUG00000016816)	ccl20b (ENSIPUG00000016828)	TFRC (ENSIPUG00000016869) #22	TNK2 (ENSIPUG00000016924) #23	tmtopsb (ENSIPUG00000016947)	and1 (ENSIPUG00000016969)	cops9 (ENSIPUG00000016987)	otos (ENSIPUG00000017038)	apodb (ENSIPUG00000017048)	mynn (ENSIPUG00000017077)	ENSIPUG00000017097	ENSIPUG00000017113	skilb (ENSIPUG00000017127)	phc3 (ENSIPUG00000017146)	CLDN11 (ENSIPUG00000017218)	ENSIPUG00000017234	rpl22l1 (ENSIPUG00000017248)	eif5a2 (ENSIPUG00000017299)
Cyprinoidei	ANCESTRAL SPECIES	52	ENSGT00940000163670.a.a	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000164851.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709.c	ENSGT00940000159794	ENSGT00940000154345.a.g	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000159828.b.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00940000162952.d.b.b.b	ENSGT00890000139496.b	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.a.b.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	241	ENSGT00990000204208.b	ENSGT00940000159906.f.b	ENSGT00940000164851.b.a.b	ENSGT00940000157080.gc.b	ENSGT00940000157313.b	ENSGT00510000048066.e	ENSGT00980000202837	ENSGT00940000162424.e	ENSGT00940000156709.c.b	ENSGT00940000159794.c.a	ENSGT00390000004940.a.a.p.b.a	ENSGT00940000154345.a.g.a	ENSGT00940000155886.p	ENSGT00940000159562.d	ENSGT00990000204463.c	ENSGT01030000234598.a.a.a.a.a #22	ENSGT00940000160853.h #23	ENSGT01100000263502.A.a.a.b.b.a	ENSGT00940000159828.b.a.b	ENSGT00500000045505.b.d	ENSGT00390000000076.s	ENSGT00390000011600.d	ENSGT00390000011600.c	ENSGT00510000046981.b.a.a	ENSGT00940000162716.b.a	ENSGT00940000162716.a	ENSGT00940000156456.f	ENSGT00730000111293.a	ENSGT00940000158435.eb.a	ENSGT00390000013820.h.b	ENSGT00940000162952.d.b.b.b.b
Cyprininae_a	ANCESTRAL SPECIES	87	ENSGT01090000262699	ENSGT00990000204208.b	ENSGT00940000159906.f.b	ENSGT00940000164851.b.a.b	ENSGT00940000157080.gc.b	ENSGT00940000157313.b	ENSGT00510000048066.e	ENSGT00940000162424.e	ENSGT00940000156709.c.b	ENSGT00940000159794.c.a	ENSGT00390000004940.a.a.p.b.a	ENSGT00940000154345.a.g.a	ENSGT00940000155886.p	ENSGT00940000159562.d	ENSGT00990000204463.c	ENSGT01030000234598.a.a.a.a.a #22	ENSGT00940000160853.h #23	ENSGT01100000263502.A.a.a.b.b.a	ENSGT00940000159828.b.a.b	ENSGT00500000045505.b.d	ENSGT00390000000076.s	ENSGT00390000011600.d	ENSGT00390000011600.c	ENSGT00510000046981.b.a.a	ENSGT00940000162716.b.b	ENSGT00940000156456.e	ENSGT00730000111293.b	ENSGT00940000158435.eb.b	ENSGT00390000013820.h.a	ENSGT00940000162952.d.b.b.b.a	ENSGT00890000139496.b.d
Golden-line barbel	MODERN SPECIES	125	ENSSGRG00000035525	ENSSGRG00000035527	PTCHD1 (ENSSGRG00000035534)	ENSSGRG00000035535	ENSSGRG00000035536	phex (ENSSGRG00000035537)	mbtps2 (ENSSGRG00000035539)	smpx (ENSSGRG00000035550)	KLHL34 (ENSSGRG00000035552)	CNKSR2 (ENSSGRG00000035592)	chrnd (ENSSGRG00000036127)	camk2n2 (ENSSGRG00000036128)	KLHL24 (ENSSGRG00000036132)	ENSSGRG00000036135	ENSSGRG00000036143	tfr1b (ENSSGRG00000036580) #22	TNK2 (ENSSGRG00000036590) #23	tmtopsb (ENSSGRG00000036640)	and1 (ENSSGRG00000036641)	cops9 (ENSSGRG00000036642)	otos (ENSSGRG00000036643)	apodb (ENSSGRG00000036644)	ENSSGRG00000036645	LRRC34 (ENSSGRG00000036646)	ENSSGRG00000036648	skilb (ENSSGRG00000036649)	zgc:194621 (ENSSGRG00000036650)	ENSSGRG00000036651	cldn11b (ENSSGRG00000036652)	ENSSGRG00000036656	rpl22l1 (ENSSGRG00000036662)
Common carp reference	MODERN SPECIES	14	ENSCCRG00000062045	ENSCCRG00000053459	ENSCCRG00000071524	ENSCCRG00000066118	phex (ENSCCRG00000023967)	mbtps2 (ENSCCRG00000024003)	smpx (ENSCCRG00000024071)	KLHL34 (ENSCCRG00000062883)	CNKSR2 (ENSCCRG00000073405)	chrnd (ENSCCRG00000013273)	camk2n2 (ENSCCRG00000013279)	ENSCCRG00000062071	ENSCCRG00000055598	ENSCCRG00000051564	ccl20b (ENSCCRG00000051571)	tfr1b (ENSCCRG00000051573) #22	ENSCCRG00000051574 #23	tmtopsb (ENSCCRG00000026562)	adipoqa (ENSCCRG00000034826)	and1 (ENSCCRG00000034844)	cops9 (ENSCCRG00000034846)	otos (ENSCCRG00000034848)	apodb (ENSCCRG00000036372)	mynn (ENSCCRG00000034860)	ENSCCRG00000034869	ENSCCRG00000034883	skilb (ENSCCRG00000001093)	zgc:194621 (ENSCCRG00000026639)	cldn11b (ENSCCRG00000026644)	ENSCCRG00000061851	rpl22l1 (ENSCCRG00000026662)
Goldfish	MODERN SPECIES	43	ENSCARG00000047005	ENSCARG00000046935	ENSCARG00000046581	PTCHD1 (ENSCARG00000046542)	phex (ENSCARG00000046184)	mbtps2 (ENSCARG00000045956)	ENSCARG00000045927	KLHL34 (ENSCARG00000045920)	CNKSR2 (ENSCARG00000042178)	chrnd (ENSCARG00000041611)	camk2n2 (ENSCARG00000041585)	KLHL24 (ENSCARG00000041554)	SH3KBP1 (ENSCARG00000041518)	MAP3K15 (ENSCARG00000040994)	ccl20b (ENSCARG00000040943)	tfr1b (ENSCARG00000040914) #22	TNK2 (ENSCARG00000040822) #23	tmtopsb (ENSCARG00000040787)	adipoqa (ENSCARG00000040723)	and1 (ENSCARG00000040697)	cops9 (ENSCARG00000040683)	otos (ENSCARG00000040674)	apodb (ENSCARG00000040658)	mynn (ENSCARG00000040641)	LRRC34 (ENSCARG00000040558)	ENSCARG00000040534	skilb (ENSCARG00000040486)	ENSCARG00000040450	ENSCARG00000040418	cldn11b (ENSCARG00000040405)	ENSCARG00000040353
Cyprininae	ANCESTRAL SPECIES	1143																ENSGT01030000234598.a.a.a.a.b #22	ENSGT00940000160853.g #23	ENSGT01100000263502.A.a.a.b.b.b
Cyprininae_a	ANCESTRAL SPECIES	71	ENSGT00990000204208.a	ENSGT00940000159906.f.a	ENSGT00940000164851.b.a.a	ENSGT00940000157080.hc	ENSGT00940000157313.a	ENSGT00510000048066.f	ENSGT00390000017542	ENSGT00940000162424.f	ENSGT00940000156709.c.a	ENSGT00940000159794.c.b	ENSGT00390000004940.a.a.p.b.b	ENSGT00940000154345.a.g.b	ENSGT00940000155886.o	ENSGT00940000159562.c	ENSGT00990000204463.d	ENSGT01030000234598.a.a.a.a.b #22	ENSGT00940000160853.g #23	ENSGT01100000263502.A.a.a.b.b.b	ENSGT00940000159828.b.a.a	ENSGT00500000045505.b.c	ENSGT00390000000076.t	ENSGT00510000046981.b.a.b	ENSGT00940000162716.b.a	ENSGT00940000162716.a	ENSGT00940000156456.f	ENSGT00730000111293.a	ENSGT00940000158435.eb.a	ENSGT00390000013820.h.b	ENSGT00940000162952.d.b.b.b.b	ENSGT00890000139496.b.c	ENSGT00940000155893.a.b
Golden-line barbel	MODERN SPECIES	84	ENSSGRG00000053116	ENSSGRG00000053117	ENSSGRG00000053118	PTCHD1 (ENSSGRG00000053121)	ENSSGRG00000053122	phex (ENSSGRG00000053123)	mbtps2 (ENSSGRG00000053125)	ENSSGRG00000053128	KLHL34 (ENSSGRG00000053129)	CNKSR2 (ENSSGRG00000053138)	camk2n2 (ENSSGRG00000053152)	KLHL24 (ENSSGRG00000053154)	SH3KBP1 (ENSSGRG00000053156)	MAP3K15 (ENSSGRG00000053161)	ccl20b (ENSSGRG00000053171)	tfr1b (ENSSGRG00000053174) #22	TNK2 (ENSSGRG00000053178) #23	tmtopsb (ENSSGRG00000053185)	adipoqa (ENSSGRG00000001122)	and1 (ENSSGRG00000001125)	cops9 (ENSSGRG00000001128)	otos (ENSSGRG00000001137)	ENSSGRG00000001145	apodb (ENSSGRG00000001151)	mynn (ENSSGRG00000001184)	ENSSGRG00000001234	skilb (ENSSGRG00000001259)	zgc:194621 (ENSSGRG00000001267)	ENSSGRG00000001279	cldn11b (ENSSGRG00000001291)	ENSSGRG00000001305
Common carp reference	MODERN SPECIES	40	ENSCCRG00000073988	ENSCCRG00000046605	ENSCCRG00000066069	ENSCCRG00000080828	phex (ENSCCRG00000015703)	mbtps2 (ENSCCRG00000015675)	smpx (ENSCCRG00000015669)	KLHL34 (ENSCCRG00000067627)	CNKSR2 (ENSCCRG00000013253)	chrnd (ENSCCRG00000013215)	camk2n2 (ENSCCRG00000013207)	ENSCCRG00000055932	ENSCCRG00000071861	ENSCCRG00000003723	ccl20b (ENSCCRG00000075452)	tfr1b (ENSCCRG00000069757) #22	ENSCCRG00000071929 #23	tmtopsb (ENSCCRG00000070121)	adipoqa (ENSCCRG00000062953)	and1 (ENSCCRG00000026576)	otos (ENSCCRG00000026595)	apodb (ENSCCRG00000026600)	mynn (ENSCCRG00000026608)	ENSCCRG00000080782	ENSCCRG00000056807	zgc:194621 (ENSCCRG00000074066)	ENSCCRG00000001075	ENSCCRG00000026650	rpl22l1 (ENSCCRG00000036635)	eif5a (ENSCCRG00000064602)	TNIK (ENSCCRG00000071510)
Goldfish	MODERN SPECIES	2096															ccl20b (ENSCARG00000036349)	tfr1b (ENSCARG00000036304) #22	TNK2 (ENSCARG00000036129) #23	tmtopsb (ENSCARG00000036092)
Zebrafish	MODERN SPECIES	16	ENSDARG00000088680	ENSDARG00000030750	ENSDARG00000088137	PTCHD1 (ENSDARG00000018066)	phex (ENSDARG00000062363)	mbtps2 (ENSDARG00000057577)	smpx (ENSDARG00000045302)	CNKSR2 (ENSDARG00000074480)	chrnd (ENSDARG00000019342)	camk2n2 (ENSDARG00000111102)	KLHL24 (ENSDARG00000008275)	ENSDARG00000075853	MAP3K15 (ENSDARG00000013310)	ENSDARG00000117117	ccl20b (ENSDARG00000094511)	tfr1b (ENSDARG00000077372) #22	TNK2 (ENSDARG00000090646) #23	ENSDARG00000103972	tmtopsb (ENSDARG00000032246)	adipoqa (ENSDARG00000062228)	and1 (ENSDARG00000088514)	cops9 (ENSDARG00000045296)	otos (ENSDARG00000108475)	apodb (ENSDARG00000057437)	mynn (ENSDARG00000007271)	ENSDARG00000062235	ENSDARG00000057392	skilb (ENSDARG00000022904)	ENSDARG00000079167	zgc:194621 (ENSDARG00000074696)	cldn11b (ENSDARG00000030723)
Euteleosteomorpha	ANCESTRAL SPECIES	135								ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000204463	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751
Acanthomorphata	ANCESTRAL SPECIES	111											ENSGT00940000164427.b	ENSGT00940000161095	ENSGT00940000163999.a	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000158212.A	ENSGT00940000155003.e.a	ENSGT01090000259987.a.b.c	ENSGT00940000157041.b	ENSGT00940000157512.j	ENSGT00940000154673.b	ENSGT00940000154187.a.a
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c
Percomorphaceae	ANCESTRAL SPECIES	28	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00940000158212.A	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Oryzias	ANCESTRAL SPECIES	18	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00950000183098.b.a.b	ENSGT00530000064112.b.a.a	ENSGT00940000166207	ENSGT00390000006738.b	ENSGT00940000156699.i	ENSGT01070000253816.b.c	ENSGT00390000016814.a	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.b	ENSGT00510000046981.b.a.c.a	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00390000001455	ENSGT00950000183098.b.a.b	ENSGT00530000064112.b.a.a	ENSGT00940000166207	ENSGT00390000006738.b	ENSGT00940000156699.i	ENSGT01070000253816.b.c	ENSGT00390000016814.a	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.b	ENSGT00510000046981.b.a.c.a	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Indian medaka	MODERN SPECIES	14	drosha (ENSOMEG00000001062)	mc4r (ENSOMEG00000001066)	CDH20 (ENSOMEG00000001068)	RNF152 (ENSOMEG00000001070)	ENSOMEG00000001072	kbtbd2 (ENSOMEG00000001074)	avl9 (ENSOMEG00000001076)	lsm5 (ENSOMEG00000001078)	psme2 (ENSOMEG00000001080)	RNF31 (ENSOMEG00000001084)	irf9 (ENSOMEG00000001086)	emc9 (ENSOMEG00000001088)	nceh1b.1 (ENSOMEG00000001090)	tnfsf10 (ENSOMEG00000001091)	msl2b (ENSOMEG00000001092)	tfr1b (ENSOMEG00000001096) #22	ENSOMEG00000001099	TNK2 (ENSOMEG00000001101) #23	ENSOMEG00000001103	and1 (ENSOMEG00000001105)	cops9 (ENSOMEG00000001106)	otos (ENSOMEG00000001107)	apodb (ENSOMEG00000001108)	apodb (ENSOMEG00000001110)	apodb (ENSOMEG00000001111)	ARHGAP21 (ENSOMEG00000001113)	ENSOMEG00000001015	enkur (ENSOMEG00000001116)	THNSL1 (ENSOMEG00000001118)	PTCHD3 (ENSOMEG00000001119)	GPR158 (ENSOMEG00000001121)
Javanese ricefish	MODERN SPECIES	12	drosha (ENSOJAG00000020074)	mc4r (ENSOJAG00000021118)	CDH20 (ENSOJAG00000021132)	RNF152 (ENSOJAG00000021190)	ENSOJAG00000021193	ENSOJAG00000021198	kbtbd2 (ENSOJAG00000021211)	LSM5 (ENSOJAG00000021274)	psme2 (ENSOJAG00000021279)	ENSOJAG00000021288	irf9 (ENSOJAG00000021296)	emc9 (ENSOJAG00000021301)	nceh1b.1 (ENSOJAG00000021321)	tnfsf10 (ENSOJAG00000021327)	msl2b (ENSOJAG00000021335)	tfr1b (ENSOJAG00000021352) #22	TNK2 (ENSOJAG00000021375) #23	ENSOJAG00000021562	and1 (ENSOJAG00000021573)	cops9 (ENSOJAG00000021588)	otos (ENSOJAG00000021590)	apodb (ENSOJAG00000021602)	apodb (ENSOJAG00000021616)	apodb (ENSOJAG00000021622)	ENSOJAG00000021661	ENSOJAG00000021669	THNSL1 (ENSOJAG00000021676)	PTCHD3 (ENSOJAG00000021681)	GPR158 (ENSOJAG00000021695)	anxa13 (ENSOJAG00000021721)	myo3a (ENSOJAG00000021775)
Oryzias_a	ANCESTRAL SPECIES	16	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00940000168188	ENSGT00940000172071	ENSGT00940000156069	ENSGT00390000010255	ENSGT00950000183098.b.a.b	ENSGT00390000001455	ENSGT00530000064112.b.a.a	ENSGT00940000166207	ENSGT00390000006738.b	ENSGT00940000156699.i	ENSGT01070000253816.b.c	ENSGT00390000016814.a	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.b	ENSGT00510000046981.b.a.c.a	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Japanese Medaka HdrR	MODERN SPECIES	12	CDH20 (ENSORLG00000013497)	RNF152 (ENSORLG00000013458)	ENSORLG00000021831	ENSORLG00000022526	kbtbd2 (ENSORLG00000013455)	avl9 (ENSORLG00000013446)	psme2 (ENSORLG00000013408)	lsm5 (ENSORLG00000027725)	ENSORLG00000013365	ENSORLG00000013335	emc9 (ENSORLG00000013326)	emc9 (ENSORLG00000023896)	nceh1b.1 (ENSORLG00000013282)	tnfsf10 (ENSORLG00000013268)	msl2b (ENSORLG00000013252)	tfr1b (ENSORLG00000013241) #22	ENSORLG00000013216 #23	tmtopsb (ENSORLG00000013181)	and1 (ENSORLG00000013172)	cops9 (ENSORLG00000022640)	otos (ENSORLG00000028897)	apodb (ENSORLG00000013153)	apodb (ENSORLG00000013130)	apodb (ENSORLG00000030628)	ARHGAP21 (ENSORLG00000013115)	ENSORLG00000013074	enkur (ENSORLG00000013051)	THNSL1 (ENSORLG00000013046)	PTCHD3 (ENSORLG00000013041)	ENSORLG00000013031	GPR158 (ENSORLG00000013035)
Chinese medaka	MODERN SPECIES	31			drosha (ENSOSIG00000010992)	mc4r (ENSOSIG00000011371)	CDH20 (ENSOSIG00000011376)	RNF152 (ENSOSIG00000011454)	ENSOSIG00000011456	ENSOSIG00000011457	kbtbd2 (ENSOSIG00000011458)	ENSOSIG00000011603	irf9 (ENSOSIG00000011609)	emc9 (ENSOSIG00000011614)	ENSOSIG00000011624	tnfsf10 (ENSOSIG00000011628)	msl2b (ENSOSIG00000011629)	tfr1b (ENSOSIG00000011631) #22	TNK2 (ENSOSIG00000011632) #23	ENSOSIG00000011636	and1 (ENSOSIG00000011637)	cops9 (ENSOSIG00000011639)	otos (ENSOSIG00000011640)	apodb (ENSOSIG00000011642)	ENSOSIG00000011650	enkur (ENSOSIG00000011652)	THNSL1 (ENSOSIG00000011653)	PTCHD3 (ENSOSIG00000011664)	GPR158 (ENSOSIG00000011666)	anxa13 (ENSOSIG00000011711)	ENSOSIG00000011718	myo3a (ENSOSIG00000011742)	gad2 (ENSOSIG00000012828)
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT00940000155003.e.a	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Cyprinodontoidei	ANCESTRAL SPECIES	27	ENSGT00940000155003.e.a	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000161095.gb.b.a	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.e	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000161095.gb.b.a	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g.d	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.e	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c
Poecilia	ANCESTRAL SPECIES	17	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000161095.gb.b.a	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g.d	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.e	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
NAME_6	ANCESTRAL SPECIES	67	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080.ub	ENSGT00940000157080.vb	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000161095.gb.b.a	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g.d	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.e	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Sailfin molly	MODERN SPECIES	1944															ENSPLAG00000009420	tfr1b (ENSPLAG00000009408) #22	ENSPLAG00000009393
Amazon molly	MODERN SPECIES	323	ENSPFOG00000002297	ggh (ENSPFOG00000002791)	DPP6 (ENSPFOG00000003014)	ENSPFOG00000003416	PTCHD1 (ENSPFOG00000003501)	PTCHD1 (ENSPFOG00000003566)	phex (ENSPFOG00000003632)	smpx (ENSPFOG00000021857)	KLHL34 (ENSPFOG00000020652)	ENSPFOG00000003983	ENSPFOG00000004637	ENSPFOG00000004724	tlr22 (ENSPFOG00000004747)	MAP3K15 (ENSPFOG00000004860)	ENSPFOG00000005966	tfr1b (ENSPFOG00000005975) #22	TNK2 (ENSPFOG00000006338) #23	ENSPFOG00000006549	and1 (ENSPFOG00000006588)	cops9 (ENSPFOG00000006618)	otos (ENSPFOG00000006648)	apodb (ENSPFOG00000006656)	ARHGAP21 (ENSPFOG00000006733)	ENSPFOG00000007024	enkur (ENSPFOG00000007190)	THNSL1 (ENSPFOG00000007232)	PTCHD3 (ENSPFOG00000007248)	GPR158 (ENSPFOG00000007298)	anxa13 (ENSPFOG00000007461)	ENSPFOG00000007652	myo3a (ENSPFOG00000007720)
Guppy	MODERN SPECIES	451	ENSPREG00000022861	ENSPREG00000022866	ENSPREG00000022873	ENSPREG00000022884	PTCHD1 (ENSPREG00000022889)	phex (ENSPREG00000022904)	mbtps2 (ENSPREG00000022920)	smpx (ENSPREG00000022927)	ENSPREG00000022932	KLHL34 (ENSPREG00000022949)	ENSPREG00000022953	tlr22 (ENSPREG00000022957)	ENSPREG00000022963	MAP3K15 (ENSPREG00000022980)	ENSPREG00000023011	tfr1b (ENSPREG00000023021) #22	ENSPREG00000023027	ENSPREG00000023029	and1 (ENSPREG00000023031)	otos (ENSPREG00000023035)	cops9 (ENSPREG00000023038)	apodb (ENSPREG00000023039)	ARHGAP21 (ENSPREG00000023043)	ENSPREG00000023054	enkur (ENSPREG00000023059)	THNSL1 (ENSPREG00000023065)	ENSPREG00000000585	GPR158 (ENSPREG00000000608)	anxa13 (ENSPREG00000000619)	myo3a (ENSPREG00000000681)	gad2 (ENSPREG00000000907)
Platyfish	MODERN SPECIES	13	ENSXMAG00000021624	ggh (ENSXMAG00000029178)	DPP6 (ENSXMAG00000014380)	ENSXMAG00000028830	PTCHD1 (ENSXMAG00000003728)	phex (ENSXMAG00000003680)	mbtps2 (ENSXMAG00000003675)	smpx (ENSXMAG00000003672)	ENSXMAG00000026188	ENSXMAG00000003639	ENSXMAG00000003638	tlr22 (ENSXMAG00000020395)	ENSXMAG00000029147	MAP3K15 (ENSXMAG00000003618)	ENSXMAG00000003596	tfr1b (ENSXMAG00000028064) #22	ENSXMAG00000021257	ENSXMAG00000008460	and1 (ENSXMAG00000008459)	cops9 (ENSXMAG00000008457)	otos (ENSXMAG00000008456)	apodb (ENSXMAG00000008455)	ARHGAP21 (ENSXMAG00000008442)	ENSXMAG00000008432	enkur (ENSXMAG00000023774)	THNSL1 (ENSXMAG00000008429)	PTCHD3 (ENSXMAG00000027875)	GPR158 (ENSXMAG00000008421)	ENSXMAG00000008418	FBXL7 (ENSXMAG00000008416)	zgc:111976 (ENSXMAG00000008412)
NAME_4	ANCESTRAL SPECIES	146												ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.e	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789
Mummichog	MODERN SPECIES	2363											tlr22 (ENSFHEG00000003328)	ENSFHEG00000003304	ENSFHEG00000003294	MAP3K15 (ENSFHEG00000003277)	ENSFHEG00000003192	tfr1b (ENSFHEG00000003167) #22	ENSFHEG00000003152	ENSFHEG00000003145 #23	ENSFHEG00000003130	and1 (ENSFHEG00000003121)	cops9 (ENSFHEG00000003115)	otos (ENSFHEG00000003109)	apodb (ENSFHEG00000003094)	apodb (ENSFHEG00000003090)	ARHGAP21 (ENSFHEG00000003051)	ENSFHEG00000002795	enkur (ENSFHEG00000002771)	THNSL1 (ENSFHEG00000002761)	PTCHD3 (ENSFHEG00000002752)	GPR158 (ENSFHEG00000002739)	anxa13 (ENSFHEG00000002679)
Sheepshead minnow	MODERN SPECIES	618						ENSCVAG00000016593	pdss1 (ENSCVAG00000016628)	ENSCVAG00000016646	apbb1ip (ENSCVAG00000016659)	ENSCVAG00000016680	gad2 (ENSCVAG00000016763)	myo3a (ENSCVAG00000016890)	ENSCVAG00000016900	MAP3K15 (ENSCVAG00000016994)	ENSCVAG00000000432	tfr1b (ENSCVAG00000017038) #22	ENSCVAG00000017051	ENSCVAG00000000435	ENSCVAG00000017092	and1 (ENSCVAG00000017128)	cops9 (ENSCVAG00000017145)	otos (ENSCVAG00000017151)
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT00940000155003.e.a	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Mangrove rivulus	MODERN SPECIES	27	ggh (ENSKMAG00000021687)	DPP6 (ENSKMAG00000021649)	ENSKMAG00000021623	PTCHD1 (ENSKMAG00000021617)	ENSKMAG00000021613	phex (ENSKMAG00000021593)	mbtps2 (ENSKMAG00000021577)	smpx (ENSKMAG00000021569)	KLHL34 (ENSKMAG00000021553)	ENSKMAG00000021528	tlr22 (ENSKMAG00000021517)	tlr22 (ENSKMAG00000021509)	ENSKMAG00000021501	MAP3K15 (ENSKMAG00000021463)	ENSKMAG00000021427	tfr1b (ENSKMAG00000021406) #22	ENSKMAG00000021397	ENSKMAG00000021389	and1 (ENSKMAG00000021381)	cops9 (ENSKMAG00000021376)	otos (ENSKMAG00000021369)
Turquoise killifish	MODERN SPECIES	1617	COL15A1 (ENSNFUG00015013758)	GGH (ENSNFUG00015013750)	ENSNFUG00015013744	DPP6 (ENSNFUG00015013443)	ENSNFUG00015013414	PTCHD1 (ENSNFUG00015013410)	PHEX (ENSNFUG00015013329)	MBTPS2 (ENSNFUG00015013301)	smpx (ENSNFUG00015013295)	KLHL34 (ENSNFUG00015013292)	ENSNFUG00015012041	tlr22 (ENSNFUG00015011990)	ENSNFUG00015011983	ENSNFUG00015011979	MAP3K15 (ENSNFUG00015011275)	TFRC (ENSNFUG00015011082) #22	TMTOPSB (ENSNFUG00015010868)	AND1 (ENSNFUG00015010862)	ENSNFUG00015010857	otos (ENSNFUG00015010851)	APOD (ENSNFUG00015010843)	ARHGAP21 (ENSNFUG00015009226)	ENSNFUG00015009006	enkur (ENSNFUG00015020845)	THNSL1 (ENSNFUG00015020801)	PTCHD3 (ENSNFUG00015020793)	GPR158 (ENSNFUG00015020721)	ANXA13 (ENSNFUG00015020673)	myo3a (ENSNFUG00015020615)	GAD2 (ENSNFUG00015020333)	apbb1ip (ENSNFUG00015020312)
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.h	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c
Cichlidae	ANCESTRAL SPECIES	18	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.h	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.h	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.h	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a.i	ENSGT00940000163999.a.j	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a.i	ENSGT00940000163999.a.j	ENSGT01030000234830	ENSGT01100000263488.a.a.b.a.b	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT00940000163999.a.i	ENSGT00940000163999.a.j	ENSGT01030000234830	ENSGT01100000263488.a.a.b.a.b	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT00940000163999.a.i	ENSGT00940000163999.a.j	ENSGT01030000234830	ENSGT01100000263488.a.a.b.a.b	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00510000046981.b.a.c.c.a	ENSGT00510000046981.b.a.c.c.b	ENSGT00510000046981.b.a.c.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.c	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a
Zebra mbuna	MODERN SPECIES	1112	CDH10 (ENSMZEG00005019383)	cdh12a (ENSMZEG00005019377)	ENSMZEG00005019356	PTCHD1 (ENSMZEG00005019350)	phex (ENSMZEG00005019325)	mbtps2 (ENSMZEG00005019312)	smpx (ENSMZEG00005019310)	ENSMZEG00005019307	ENSMZEG00005019300	tlr22 (ENSMZEG00005019089)	tlr22 (ENSMZEG00005019074)	ENSMZEG00005019076	ENSMZEG00005019070	MAP3K15 (ENSMZEG00005019059)	ENSMZEG00005019031	tfr1b (ENSMZEG00005019006) #22	ENSMZEG00005019004	ENSMZEG00005018994	and1 (ENSMZEG00005018990)	cops9 (ENSMZEG00005018988)	otos (ENSMZEG00005018986)	apodb (ENSMZEG00005018981)	apodb (ENSMZEG00005018977)	apodb (ENSMZEG00005018973)	apodb (ENSMZEG00005018963)	ARHGAP21 (ENSMZEG00005018941)	ENSMZEG00005018929	enkur (ENSMZEG00005018925)	THNSL1 (ENSMZEG00005018922)	ENSMZEG00005018916	GPR158 (ENSMZEG00005018913)
Eastern happy	MODERN SPECIES	21	ggh (ENSACLG00000010606)	DPP6 (ENSACLG00000010453)	ENSACLG00000009573	PTCHD1 (ENSACLG00000009562)	phex (ENSACLG00000009510)	mbtps2 (ENSACLG00000009472)	smpx (ENSACLG00000009467)	ENSACLG00000009464	ENSACLG00000009446	tlr22 (ENSACLG00000009223)	ENSACLG00000009197	tlr22 (ENSACLG00000009186)	ENSACLG00000009181	MAP3K15 (ENSACLG00000009022)	ENSACLG00000009007	tfr1b (ENSACLG00000008997) #22	ENSACLG00000008993	ENSACLG00000008969	and1 (ENSACLG00000008966)	cops9 (ENSACLG00000008964)	otos (ENSACLG00000008958)	apodb (ENSACLG00000008950)	apodb (ENSACLG00000008941)	apodb (ENSACLG00000008937)	ENSACLG00000008930	apodb (ENSACLG00000008919)	ARHGAP21 (ENSACLG00000008833)	ENSACLG00000008499	ENSACLG00000008493	THNSL1 (ENSACLG00000008487)	ENSACLG00000008479
P. nyererei	MODERN SPECIES	332	ggh (ENSPNYG00000001122)	DPP6 (ENSPNYG00000001184)	ENSPNYG00000001404	ENSPNYG00000001418	ENSPNYG00000001429	PTCHD1 (ENSPNYG00000001466)	phex (ENSPNYG00000001500)	mbtps2 (ENSPNYG00000001610)	smpx (ENSPNYG00000001672)	ENSPNYG00000001685	ENSPNYG00000001707	tlr22 (ENSPNYG00000001769)	ENSPNYG00000001781	MAP3K15 (ENSPNYG00000001811)	ENSPNYG00000001905	tfr1b (ENSPNYG00000002114) #22	ENSPNYG00000002202	ENSPNYG00000002220	and1 (ENSPNYG00000002287)	cops9 (ENSPNYG00000002309)	otos (ENSPNYG00000002323)	apodb (ENSPNYG00000002334)	apodb (ENSPNYG00000002380)	apodb (ENSPNYG00000002398)	ARHGAP21 (ENSPNYG00000002416)	ENSPNYG00000002441	ENSPNYG00000002477	THNSL1 (ENSPNYG00000002491)	PTCHD3 (ENSPNYG00000002503)	GPR158 (ENSPNYG00000002525)	anxa13 (ENSPNYG00000002576)
Burton s mouthbrooder	MODERN SPECIES	410				ENSHBUG00000013562	PTCHD1 (ENSHBUG00000013571)	phex (ENSHBUG00000013674)	mbtps2 (ENSHBUG00000013711)	smpx (ENSHBUG00000013727)	ENSHBUG00000013744	ENSHBUG00000013756	tlr22 (ENSHBUG00000013780)	ENSHBUG00000000410	ENSHBUG00000013794	MAP3K15 (ENSHBUG00000014006)	ENSHBUG00000014053	tfr1b (ENSHBUG00000014091) #22	ENSHBUG00000014116	ENSHBUG00000014146	and1 (ENSHBUG00000014154)	apodb (ENSHBUG00000014166)	apodb (ENSHBUG00000014179)	apodb (ENSHBUG00000014192)	ARHGAP21 (ENSHBUG00000014212)	enkur (ENSHBUG00000014272)	THNSL1 (ENSHBUG00000014292)	ENSHBUG00000014311	GPR158 (ENSHBUG00000014329)	anxa13 (ENSHBUG00000014345)	myo3a (ENSHBUG00000014652)	gad2 (ENSHBUG00000014719)	ENSHBUG00000014731
Lyretail cichlid	MODERN SPECIES	351	ggh (ENSNBRG00000002252)	DPP6 (ENSNBRG00000002373)	ENSNBRG00000002919	PTCHD1 (ENSNBRG00000002953)	phex (ENSNBRG00000002987)	mbtps2 (ENSNBRG00000003071)	smpx (ENSNBRG00000003107)	ENSNBRG00000003127	ENSNBRG00000003141	ENSNBRG00000003205	tlr22 (ENSNBRG00000003703)	tlr22 (ENSNBRG00000003857)	ENSNBRG00000003950	MAP3K15 (ENSNBRG00000003984)	ENSNBRG00000004070	tfr1b (ENSNBRG00000004217) #22	ENSNBRG00000004486	ENSNBRG00000004494	and1 (ENSNBRG00000004515)	cops9 (ENSNBRG00000004552)	otos (ENSNBRG00000004569)	apodb (ENSNBRG00000004590)	apodb (ENSNBRG00000004637)	apodb (ENSNBRG00000004654)	apodb (ENSNBRG00000004681)	ARHGAP21 (ENSNBRG00000004700)	ENSNBRG00000004783	ENSNBRG00000004971	THNSL1 (ENSNBRG00000004985)	ENSNBRG00000004994	ENSNBRG00000005009
Nile tilapia	MODERN SPECIES	21	ggh (ENSONIG00000006535)	DPP6 (ENSONIG00000006520)	ENSONIG00000031684	ENSONIG00000043130	ENSONIG00000028699	ptchd1 (ENSONIG00000006518)	phex (ENSONIG00000006507)	mbtps2 (ENSONIG00000006505)	smpx (ENSONIG00000036456)	KLHL34 (ENSONIG00000039630)	ENSONIG00000006498	tlr22 (ENSONIG00000006496)	ENSONIG00000031261	MAP3K15 (ENSONIG00000006490)	ENSONIG00000006488	tfr1b (ENSONIG00000006480) #22	TNK2 (ENSONIG00000006477) #23	ENSONIG00000006473	and1 (ENSONIG00000006472)	cops9 (ENSONIG00000036252)	otos (ENSONIG00000031057)	apodb (ENSONIG00000006461)	apodb (ENSONIG00000006466)	apodb (ENSONIG00000006464)	apodb (ENSONIG00000006468)	ARHGAP21 (ENSONIG00000006455)	ENSONIG00000006453	enkur (ENSONIG00000006449)	THNSL1 (ENSONIG00000006448)	PTCHD3 (ENSONIG00000006447)	GPR158 (ENSONIG00000006444)
Midas cichlid	MODERN SPECIES	961	PTCHD1 (ENSACIG00000020632)	phex (ENSACIG00000020643)	mbtps2 (ENSACIG00000020667)	smpx (ENSACIG00000020689)	ENSACIG00000020695	ENSACIG00000020706	ENSACIG00000020717	ENSACIG00000020758	ENSACIG00000020767	ENSACIG00000020784	ENSACIG00000020795	tlr22 (ENSACIG00000020806)	ENSACIG00000020875	MAP3K15 (ENSACIG00000020885)	ENSACIG00000020928	tfr1b (ENSACIG00000020976) #22	ENSACIG00000021211	ENSACIG00000021222
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424.h	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826.b	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.a	ENSGT00940000166789	ENSGT00940000155939
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT01100000263894	ENSGT00940000158089.b	ENSGT00950000182997.b	ENSGT00940000157755.r	ENSGT00940000159906.f	ENSGT00940000163670.a	ENSGT00940000163670.b.a.l	ENSGT01020000230622.f	ENSGT00390000017542	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826.b	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.a	ENSGT00940000166789	ENSGT00940000155939
Amphiprion	ANCESTRAL SPECIES	7	ENSGT01100000263894	ENSGT00940000158089.b	ENSGT00950000182997.b	ENSGT00940000157755.r	ENSGT00940000159906.f	ENSGT00940000163670.a	ENSGT00940000163670.b.a.l	ENSGT01020000230622.f	ENSGT00390000017542	ENSGT00940000162424.g	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826.b	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.k.a.a	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000008469	vipr2 (ENSAPEG00000008477)	ENSAPEG00000008521	ENSAPEG00000008647	ENSAPEG00000008729	ENSAPEG00000008780	ENSAPEG00000008814	ENSAPEG00000008829	smpx (ENSAPEG00000008836)	KLHL34 (ENSAPEG00000008878)	ENSAPEG00000009132	tlr22 (ENSAPEG00000009201)	ENSAPEG00000009215	MAP3K15 (ENSAPEG00000009242)	SH3KBP1 (ENSAPEG00000009350)	tfr1b (ENSAPEG00000009371) #22	ENSAPEG00000009419	ENSAPEG00000009431	and1 (ENSAPEG00000009456)	cops9 (ENSAPEG00000009463)	otos (ENSAPEG00000009475)	apodb (ENSAPEG00000009485)	ARHGAP21 (ENSAPEG00000009497)	ENSAPEG00000009618	enkur (ENSAPEG00000009632)	THNSL1 (ENSAPEG00000009656)	ENSAPEG00000009664	GPR158 (ENSAPEG00000009689)	anxa13 (ENSAPEG00000009788)	ENSAPEG00000009802	myo3a (ENSAPEG00000009841)
Clown anemonefish	MODERN SPECIES	1049												tlr22 (ENSAOCG00000023293)	ENSAOCG00000023242	MAP3K15 (ENSAOCG00000023224)	SH3KBP1 (ENSAOCG00000023120)	tfr1b (ENSAOCG00000023096) #22	ENSAOCG00000023015	ENSAOCG00000023001	rnf220a (ENSAOCG00000022990)	tmem53 (ENSAOCG00000022935)	toe1 (ENSAOCG00000022922)	si:ch73-382f3.1 (ENSAOCG00000022911)	ENSAOCG00000022897	elovl8a (ENSAOCG00000022889)	fabp6 (ENSAOCG00000022873)	zswim5 (ENSAOCG00000001893)
Spiny chromis	MODERN SPECIES	173										ENSAPOG00000013506	tlr22 (ENSAPOG00000013517)	ENSAPOG00000013522	ENSAPOG00000013536	MAP3K15 (ENSAPOG00000013651)	ENSAPOG00000000749	tfr1b (ENSAPOG00000013683) #22	ENSAPOG00000013705	ENSAPOG00000013718	and1 (ENSAPOG00000013752)	cops9 (ENSAPOG00000013772)	otos (ENSAPOG00000013780)	apodb (ENSAPOG00000013789)	ARHGAP21 (ENSAPOG00000013830)	ENSAPOG00000013856	enkur (ENSAPOG00000013904)	THNSL1 (ENSAPOG00000013915)	PTCHD3 (ENSAPOG00000000750)	GPR158 (ENSAPOG00000013950)	ENSAPOG00000013982	anxa13 (ENSAPOG00000014026)
Bicolor damselfish	MODERN SPECIES	905							mbtps2 (ENSSPAG00000014936)	smpx (ENSSPAG00000014918)	ENSSPAG00000014881	ENSSPAG00000014869	ENSSPAG00000014828	tlr22 (ENSSPAG00000014817)	ENSSPAG00000014795	MAP3K15 (ENSSPAG00000014690)	ENSSPAG00000014656	tfr1b (ENSSPAG00000014619) #22	ENSSPAG00000014605
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00940000164061.c.b	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT01000000218615	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Fugu	MODERN SPECIES	1	ENSTRUG00000017858	EPC1 (ENSTRUG00000017859)	ENSTRUG00000028988	APOD (ENSTRUG00000017918)	ggh (ENSTRUG00000024478)	DPP6 (ENSTRUG00000017923)	ENSTRUG00000002110	PTCHD1 (ENSTRUG00000002271)	phex (ENSTRUG00000002673)	mbtps2 (ENSTRUG00000005111)	smpx (ENSTRUG00000005369)	KLHL34 (ENSTRUG00000005378)	ENSTRUG00000005486	tlr22 (ENSTRUG00000006193)	ENSTRUG00000006921	tfr1b (ENSTRUG00000007479) #22	ENSTRUG00000007879 #23	ENSTRUG00000022569	and1 (ENSTRUG00000023302)	cops9 (ENSTRUG00000008426)	otos (ENSTRUG00000008445)	apodb (ENSTRUG00000008463)	ARHGAP21 (ENSTRUG00000008576)	ENSTRUG00000009046	ENSTRUG00000027549	enkur (ENSTRUG00000009288)	THNSL1 (ENSTRUG00000009354)	GPR158 (ENSTRUG00000009386)	anxa13 (ENSTRUG00000009482)	myo3a (ENSTRUG00000031307)	gad2 (ENSTRUG00000009807)
Tetraodon	MODERN SPECIES	21	acbd5a (ENSTNIG00000013646)	abi1a (ENSTNIG00000013645)	ENSTNIG00000013644	pdss1 (ENSTNIG00000013643)	THNSL1 (ENSTNIG00000013642)	GPR158 (ENSTNIG00000013641)	myo3a (ENSTNIG00000013640)	gad2 (ENSTNIG00000013639)	apbb1ip (ENSTNIG00000013638)	enkur (ENSTNIG00000001171)	ENSTNIG00000013637	ENSTNIG00000013636	ARHGAP21 (ENSTNIG00000013635)	apodb (ENSTNIG00000013634)	otos (ENSTNIG00000013633)	tfr1b (ENSTNIG00000013632) #22	TNK2 (ENSTNIG00000013631) #23	ENSTNIG00000001064	cops9 (ENSTNIG00000013630)	ENSTNIG00000013629	MAP3K15 (ENSTNIG00000013628)	tlr22 (ENSTNIG00000013627)	ENSTNIG00000013626	KLHL34 (ENSTNIG00000013625)	mbtps2 (ENSTNIG00000013624)	phex (ENSTNIG00000013623)	PTCHD1 (ENSTNIG00000013622)	ENSTNIG00000013621	DPP6 (ENSTNIG00000013620)	ENSTNIG00000013619	ENSTNIG00000013618
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Ballan wrasse	MODERN SPECIES	847													MAP3K15 (ENSLBEG00000019714)	ENSLBEG00000019849	ENSLBEG00000019882	tfr1b (ENSLBEG00000019896) #22	ENSLBEG00000019923
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Perciformes	ANCESTRAL SPECIES	21	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Perciformes_a	ANCESTRAL SPECIES	22			ENSGT00490000043388.b.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Pike perch	MODERN SPECIES	140					ENSSLUG00000016022	PTCHD1 (ENSSLUG00000016034)	phex (ENSSLUG00000016045)	mbtps2 (ENSSLUG00000016083)	smpx (ENSSLUG00000016131)	KLHL34 (ENSSLUG00000016137)	ENSSLUG00000016158	tlr22 (ENSSLUG00000016255)	ENSSLUG00000016261	MAP3K15 (ENSSLUG00000016351)	ENSSLUG00000016789	tfr1b (ENSSLUG00000016804) #22	TNK2 (ENSSLUG00000016836) #23	ENSSLUG00000017183	and1 (ENSSLUG00000017192)	cops9 (ENSSLUG00000017210)	otos (ENSSLUG00000017220)	apodb (ENSSLUG00000017226)	ARHGAP21 (ENSSLUG00000017271)	ENSSLUG00000018012	enkur (ENSSLUG00000018020)	THNSL1 (ENSSLUG00000018023)	ENSSLUG00000018025	GPR158 (ENSSLUG00000018029)	anxa13 (ENSSLUG00000018062)	myo3a (ENSSLUG00000018260)	gad2 (ENSSLUG00000018520)
Channel bull blenny	MODERN SPECIES	12	AGL (ENSCGOG00000018821)	ggh (ENSCGOG00000018799)	DPP6 (ENSCGOG00000018517)	PTCHD1 (ENSCGOG00000018498)	ENSCGOG00000018494	ENSCGOG00000018493	phex (ENSCGOG00000018477)	mbtps2 (ENSCGOG00000018471)	smpx (ENSCGOG00000018470)	KLHL34 (ENSCGOG00000018454)	ENSCGOG00000017872	ENSCGOG00000017694 #9	ENSCGOG00000017687	MAP3K15 (ENSCGOG00000017176)	ENSCGOG00000017142	tfr1b (ENSCGOG00000017130) #22	TNK2 (ENSCGOG00000017071) #23	ENSCGOG00000017026	and1 (ENSCGOG00000017018)	cops9 (ENSCGOG00000017016)	otos (ENSCGOG00000017014)	apodb (ENSCGOG00000017005)	apodb (ENSCGOG00000017001)	ARHGAP21 (ENSCGOG00000016457)	ENSCGOG00000016380	enkur (ENSCGOG00000016376)	THNSL1 (ENSCGOG00000016372)	ENSCGOG00000016370	GPR158 (ENSCGOG00000016366)	anxa13 (ENSCGOG00000016333)	ENSCGOG00000016329
Cottioidei	ANCESTRAL SPECIES	43	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076
Stickleback	MODERN SPECIES	20	avl9 (ENSGACG00000005543)	lsm5 (ENSGACG00000005528)	ENSGACG00000005526	ENSGACG00000005524	ezh2 (ENSGACG00000005519)	cul1a (ENSGACG00000005504)	PTCHD1 (ENSGACG00000005500)	phex (ENSGACG00000005488)	mbtps2 (ENSGACG00000005478)	smpx (ENSGACG00000005475)	KLHL34 (ENSGACG00000005472)	ENSGACG00000005455	tlr22 (ENSGACG00000005449)	MAP3K15 (ENSGACG00000005435)	ENSGACG00000005424	tfr1b (ENSGACG00000005398) #22	TNK2 (ENSGACG00000005390) #23	ENSGACG00000005386	and1 (ENSGACG00000005377)	cops9 (ENSGACG00000005374)	otos (ENSGACG00000005371)	apodb (ENSGACG00000005360)	ARHGAP21 (ENSGACG00000005346)	ENSGACG00000005328	enkur (ENSGACG00000005314)	THNSL1 (ENSGACG00000005308)	GPR158 (ENSGACG00000005288)	ENSGACG00000005286	anxa13 (ENSGACG00000005172)	myo3a (ENSGACG00000005155)	gad2 (ENSGACG00000005146)
Lumpfish	MODERN SPECIES	12	DPP6 (ENSCLMG00005008227)	ENSCLMG00005008225	ENSCLMG00005008223	PTCHD1 (ENSCLMG00005008222)	ENSCLMG00005008221	phex (ENSCLMG00005007716)	mbtps2 (ENSCLMG00005007711)	ENSCLMG00005007709	KLHL34 (ENSCLMG00005007708)	ENSCLMG00005011587	tlr22 (ENSCLMG00005011299)	ENSCLMG00005011292	MAP3K15 (ENSCLMG00005011290)	ENSCLMG00005011288	ENSCLMG00005011287	tfr1b (ENSCLMG00005011286) #22	TNK2 (ENSCLMG00005011281) #23	ENSCLMG00005011278	and1 (ENSCLMG00005011276)	cops9 (ENSCLMG00005011275)	ENSCLMG00005011273	ENSCLMG00005011262	msl2b (ENSCLMG00005011261)	tnfsf10 (ENSCLMG00005011259)	nceh1b.1 (ENSCLMG00005011246)	ENSCLMG00005011242	emc9 (ENSCLMG00005011239)	irf9 (ENSCLMG00005011236)	ENSCLMG00005011233	psme2 (ENSCLMG00005011232)	ENSCLMG00005011230
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT01100000266531	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
European seabass	MODERN SPECIES	8	ENSDLAG00005023022	ENSDLAG00005023009	ENSDLAG00005032400	ENSDLAG00005022752	ENSDLAG00005029272	ENSDLAG00005022740	phex (ENSDLAG00005022731)	mbtps2 (ENSDLAG00005022725)	smpx (ENSDLAG00005022724)	KLHL34 (ENSDLAG00005028142)	ENSDLAG00005022561	ENSDLAG00005022546	ENSDLAG00005033992	ENSDLAG00005022046	ENSDLAG00005021994	tfr1b (ENSDLAG00005021944) #22	ENSDLAG00005021761 #23	ENSDLAG00005021734	and1 (ENSDLAG00005028936)	ENSDLAG00005031859	otos (ENSDLAG00005018272)	ENSDLAG00005034842	ENSDLAG00005031139	ENSDLAG00005009045	ENSDLAG00005021721	ARHGAP21 (ENSDLAG00005021698)	ENKUR (ENSDLAG00005027647)	THNSL1 (ENSDLAG00005021479)	ENSDLAG00005021472	GPR158 (ENSDLAG00005021414)	anxa13 (ENSDLAG00005021318)
Large yellow croaker	MODERN SPECIES	494	ENSLCRG00005012716	KLHL34 (ENSLCRG00005012719)	ENSLCRG00005012721	mbtps2 (ENSLCRG00005012723)	PHEX (ENSLCRG00005012728)	PTCHD1 (ENSLCRG00005012732)	ENSLCRG00005012733	ENSLCRG00005012734	DPP6 (ENSLCRG00005012771)	ggh (ENSLCRG00005016697)	ENSLCRG00005016706	ENSLCRG00005016708	ENSLCRG00005016709	ENSLCRG00005016710	ENSLCRG00005016713	tfr1b (ENSLCRG00005016715) #22	TNK2 (ENSLCRG00005016720) #23	ENSLCRG00005016745	and1 (ENSLCRG00005016746)	cops9 (ENSLCRG00005016747)	ENSLCRG00005016748	otos (ENSLCRG00005016749)	apodb (ENSLCRG00005016750)	ARHGAP21 (ENSLCRG00005016754)	ENSLCRG00005017007	enkur (ENSLCRG00005017008)	THNSL1 (ENSLCRG00005017009)	ENSLCRG00005017011	GPR158 (ENSLCRG00005017012)	anxa13 (ENSLCRG00005017026)	ENSLCRG00005017123
Gilthead seabream	MODERN SPECIES	10	ENSSAUG00010022065	ggh (ENSSAUG00010022064)	DPP6 (ENSSAUG00010021948)	ENSSAUG00010021920	PTCHD1 (ENSSAUG00010021915)	ENSSAUG00010021914	phex (ENSSAUG00010021545)	mbtps2 (ENSSAUG00010021496)	smpx (ENSSAUG00010021485)	KLHL34 (ENSSAUG00010021483)	ENSSAUG00010019783	tlr22 (ENSSAUG00010019686)	ENSSAUG00010019684	MAP3K15 (ENSSAUG00010019543)	ENSSAUG00010019517	tfr1b (ENSSAUG00010019418) #22	TNK2 (ENSSAUG00010019408) #23	ENSSAUG00010019406	and1 (ENSSAUG00010019405)	cops9 (ENSSAUG00010019403)	otos (ENSSAUG00010019400)	apodb (ENSSAUG00010019399)	ENSSAUG00010019398	ARHGAP21 (ENSSAUG00010019384)	ENSSAUG00010019377	enkur (ENSSAUG00010019375)	THNSL1 (ENSSAUG00010019373)	PTCHD3 (ENSSAUG00010019370)	GPR158 (ENSSAUG00010019367)	anxa13 (ENSSAUG00010019365)	myo3a (ENSSAUG00010019358)
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01100000263476.D	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00510000046981.a.b	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Zig-zag eel	MODERN SPECIES	12	ENSMAMG00000012333	ENSMAMG00000012285	ENSMAMG00000012266	ENSMAMG00000012099	ENSMAMG00000012080	ENSMAMG00000012034	phex (ENSMAMG00000011962)	mbtps2 (ENSMAMG00000011936)	smpx (ENSMAMG00000011927)	KLHL34 (ENSMAMG00000028540)	ENSMAMG00000011850	ENSMAMG00000011822	ENSMAMG00000011832	ENSMAMG00000011768	ENSMAMG00000011743	tfr1b (ENSMAMG00000011731) #22	ENSMAMG00000011703 #23	ENSMAMG00000011687	and1 (ENSMAMG00000011655)	ENSMAMG00000011648	otos (ENSMAMG00000011643)	apodb (ENSMAMG00000011636)	ARHGAP21 (ENSMAMG00000011613)	ENSMAMG00000011604	enkur (ENSMAMG00000011594)	THNSL1 (ENSMAMG00000011588)	ENSMAMG00000011578	GPR158 (ENSMAMG00000011558)	anxa13 (ENSMAMG00000011536)	myo3a (ENSMAMG00000011459)	gad2 (ENSMAMG00000011415)
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939
Siamese fighting fish	MODERN SPECIES	15	EPC1 (ENSBSLG00000016701)	ENSBSLG00000016463	ggh (ENSBSLG00000016457)	DPP6 (ENSBSLG00000016274)	ENSBSLG00000016245	PTCHD1 (ENSBSLG00000016233)	phex (ENSBSLG00000015999)	mbtps2 (ENSBSLG00000015982)	smpx (ENSBSLG00000015972)	KLHL34 (ENSBSLG00000015971)	ENSBSLG00000014926	tlr22 (ENSBSLG00000014893)	ENSBSLG00000014885	MAP3K15 (ENSBSLG00000014444)	ENSBSLG00000014399	tfr1b (ENSBSLG00000014372) #22	ENSBSLG00000014361	ENSBSLG00000014351	and1 (ENSBSLG00000014306)	cops9 (ENSBSLG00000014291)	otos (ENSBSLG00000014281)	apodb (ENSBSLG00000014069)	ENSBSLG00000014027	ARHGAP21 (ENSBSLG00000012945)	ENSBSLG00000012924	enkur (ENSBSLG00000012921)	THNSL1 (ENSBSLG00000012919)	PTCHD3 (ENSBSLG00000012913)	GPR158 (ENSBSLG00000012890)	anxa13 (ENSBSLG00000012815)	myo3a (ENSBSLG00000012733)
Climbing perch	MODERN SPECIES	11	ENSATEG00000027112	ENSATEG00000022668	ENSATEG00000022727	ENSATEG00000022755	ENSATEG00000027285	ENSATEG00000022794	phex (ENSATEG00000022809)	mbtps2 (ENSATEG00000022841)	smpx (ENSATEG00000026886)	KLHL34 (ENSATEG00000022877)	ENSATEG00000022885	ENSATEG00000022904	ENSATEG00000022932	ENSATEG00000022955	ENSATEG00000022999	tfr1b (ENSATEG00000023022) #22	ENSATEG00000027697 #23	ENSATEG00000023067	and1 (ENSATEG00000023069)	cops9 (ENSATEG00000023075)	otos (ENSATEG00000029162)	apodb (ENSATEG00000030173)	ARHGAP21 (ENSATEG00000023102)	ENSATEG00000025689	ENSATEG00000023159	enkur (ENSATEG00000023167)	THNSL1 (ENSATEG00000023183)	ENSATEG00000023190	GPR158 (ENSATEG00000023199)	anxa13 (ENSATEG00000023208)	ENSATEG00000027086
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01030000234826.d	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939
Seriola	ANCESTRAL SPECIES	27	ENSGT00940000164061.c.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a.e	ENSGT00940000163999.a.f	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT01030000234826.d	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951	ENSGT00810000125439.A
Greater amberjack	MODERN SPECIES	57										tlr22 (ENSSDUG00000009192)	tlr22 (ENSSDUG00000009045)	tlr22 (ENSSDUG00000008873)	ENSSDUG00000008849	MAP3K15 (ENSSDUG00000008778)	ENSSDUG00000008683	tfr1b (ENSSDUG00000008656) #22	ENSSDUG00000008644	ENSSDUG00000008619	and1 (ENSSDUG00000008607)	cops9 (ENSSDUG00000008601)	otos (ENSSDUG00000008594)	ENSSDUG00000008580	ENSSDUG00000008574	ENSSDUG00000008544	ENSSDUG00000008534	ENSSDUG00000008506	ENSSDUG00000008451	apodb (ENSSDUG00000008429)	ARHGAP21 (ENSSDUG00000008408)	enkur (ENSSDUG00000008394)	ENSSDUG00000008352
Yellowtail amberjack	MODERN SPECIES	3243	ENSSLDG00000025318	ggh (ENSSLDG00000025320)	DPP6 (ENSSLDG00000025324)	ENSSLDG00000025344	PTCHD1 (ENSSLDG00000025346)	phex (ENSSLDG00000025348)	mbtps2 (ENSSLDG00000025351)	smpx (ENSSLDG00000025353)	ENSSLDG00000025354	ENSSLDG00000025355	tlr22 (ENSSLDG00000025363)	tlr22 (ENSSLDG00000025375)	ENSSLDG00000025381	MAP3K15 (ENSSLDG00000025382)	ENSSLDG00000025391	tfr1b (ENSSLDG00000025394) #22	ENSSLDG00000025397	ENSSLDG00000025399	and1 (ENSSLDG00000025403)	ENSSLDG00000025405	otos (ENSSLDG00000025407)	ENSSLDG00000025410	ENSSLDG00000025414	ENSSLDG00000025416	ENSSLDG00000025418	ENSSLDG00000025421
Barramundi perch	MODERN SPECIES	84	ENSLCAG00010027697	ENSLCAG00010027700	ENSLCAG00010027701	ggh (ENSLCAG00010027702)	DPP6 (ENSLCAG00010000250)	PTCHD1 (ENSLCAG00010000427)	phex (ENSLCAG00010000445)	mbtps2 (ENSLCAG00010000470)	smpx (ENSLCAG00010000477)	ENSLCAG00010000505	KLHL34 (ENSLCAG00010000539)	tlr22 (ENSLCAG00010000565)	ENSLCAG00010000591	MAP3K15 (ENSLCAG00010000696)	SH3KBP1 (ENSLCAG00010000780)	tfr1b (ENSLCAG00010000788) #22	TNK2 (ENSLCAG00010000808) #23	ENSLCAG00010000814	and1 (ENSLCAG00010000824)	cops9 (ENSLCAG00010000834)	otos (ENSLCAG00010000839)
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000158212.A	ENSGT00510000046981.a.b	ENSGT00490000043388.b.b	ENSGT00940000156280.a.b	ENSGT00940000164851.b.b.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000163999.a	ENSGT01030000234830	ENSGT00940000159562	ENSGT00940000155886	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A.l	ENSGT00940000161144	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a
Tongue sole	MODERN SPECIES	13	ENSCSEG00000018491	ENSCSEG00000018499	ENSCSEG00000018510	ENSCSEG00000018549	GALNT11 (ENSCSEG00000018556)	chodl (ENSCSEG00000018566)	ENSCSEG00000018571	PTPRM (ENSCSEG00000018576)	ENSCSEG00000018631	ENSCSEG00000018656	ENSCSEG00000018662	gnal (ENSCSEG00000018677)	ENSCSEG00000018685	zbtb14 (ENSCSEG00000018698)	ENSCSEG00000018715	tfr1b (ENSCSEG00000018768) #22	TNK2 (ENSCSEG00000018810) #23	ENSCSEG00000018837	and1 (ENSCSEG00000018848)	cops9 (ENSCSEG00000018852)	otos (ENSCSEG00000018868)	apodb (ENSCSEG00000018875)	ARHGAP21 (ENSCSEG00000018885)	ENSCSEG00000018925	enkur (ENSCSEG00000018935)	THNSL1 (ENSCSEG00000018942)	GPR158 (ENSCSEG00000019243)	anxa13 (ENSCSEG00000019246)	myo3a (ENSCSEG00000019252)	gad2 (ENSCSEG00000019259)	ENSCSEG00000019273
Turbot	MODERN SPECIES	13	ENSSMAG00000007526	ENSSMAG00000007506	ENSSMAG00000007377	ENSSMAG00000007283	ENSSMAG00000007243	phex (ENSSMAG00000007045)	mbtps2 (ENSSMAG00000007005)	smpx (ENSSMAG00000006996)	KLHL34 (ENSSMAG00000006992)	ENSSMAG00000006963	ENSSMAG00000006916	ENSSMAG00000006934	ENSSMAG00000037447	ENSSMAG00000006734	ENSSMAG00000006648	tfr1b (ENSSMAG00000006625) #22	ENSSMAG00000026278 #23	ENSSMAG00000006613	and1 (ENSSMAG00000006600)	cops9 (ENSSMAG00000023759)	apodb (ENSSMAG00000006569)	ARHGAP21 (ENSSMAG00000006316)	ENSSMAG00000006278	enkur (ENSSMAG00000006261)	THNSL1 (ENSSMAG00000006248)	GPR158 (ENSSMAG00000031599)	anxa13 (ENSSMAG00000006183)	myo3a (ENSSMAG00000006089)	gad2 (ENSSMAG00000006030)	apbb1ip (ENSSMAG00000005978)	ENSSMAG00000005952
Tiger tail seahorse	MODERN SPECIES	337				ENSHCOG00000011122	PTCHD1 (ENSHCOG00000011139)	ENSHCOG00000011148	phex (ENSHCOG00000011336)	mbtps2 (ENSHCOG00000011394)	smpx (ENSHCOG00000011412)	KLHL34 (ENSHCOG00000011447)	ENSHCOG00000011480	tlr22 (ENSHCOG00000011491)	ENSHCOG00000011516	MAP3K15 (ENSHCOG00000011578)	ENSHCOG00000011617	tfr1b (ENSHCOG00000011624) #22	ENSHCOG00000011644	ENSHCOG00000011720	and1 (ENSHCOG00000011766)	cops9 (ENSHCOG00000011786)	otos (ENSHCOG00000011794)	apodb (ENSHCOG00000011798)	ARHGAP21 (ENSHCOG00000012098)	ENSHCOG00000012153	enkur (ENSHCOG00000012218)	GPR158 (ENSHCOG00000012271)	anxa13 (ENSHCOG00000012308)	myo3a (ENSHCOG00000000855)	gad2 (ENSHCOG00000012625)	FBXL7 (ENSHCOG00000012659)	ENSHCOG00000012691
Pinecone sodierfish	MODERN SPECIES	12	ggh (ENSMMDG00005023027)	DPP6 (ENSMMDG00005022128)	ENSMMDG00005022035	PTCHD1 (ENSMMDG00005022031)	ENSMMDG00005022029	phex (ENSMMDG00005021933)	mbtps2 (ENSMMDG00005021920)	ENSMMDG00005021913	KLHL34 (ENSMMDG00005021911)	ENSMMDG00005021908	ENSMMDG00005021904	tlr22 (ENSMMDG00005021723)	ENSMMDG00005021708	MAP3K15 (ENSMMDG00005021703)	ENSMMDG00005021698	tfr1b (ENSMMDG00005021691) #22	TNK2 (ENSMMDG00005021682) #23	ENSMMDG00005021651	and1 (ENSMMDG00005021641)	cops9 (ENSMMDG00005021640)	otos (ENSMMDG00005021637)	apodb (ENSMMDG00005021635)	ARHGAP21 (ENSMMDG00005021602)	ENSMMDG00005021428	enkur (ENSMMDG00005021421)	THNSL1 (ENSMMDG00005021418)	PTCHD3 (ENSMMDG00005021415)	GPR158 (ENSMMDG00005021409)	lsm5 (ENSMMDG00005021403)	psme2 (ENSMMDG00005021395)	RNF31 (ENSMMDG00005021391)
Cod	MODERN SPECIES	15	ENSGMOG00000023804	ENSGMOG00000010863	ENSGMOG00000030781	ENSGMOG00000007643	ENSGMOG00000034157	ENSGMOG00000034915	ENSGMOG00000007655	ENSGMOG00000027383	CPA6 (ENSGMOG00000017058)	PREX2 (ENSGMOG00000016980)	zgc:162928 (ENSGMOG00000016953)	sulf1 (ENSGMOG00000016922)	ENSGMOG00000023416	ENSGMOG00000000140	ENSGMOG00000000132	ENSGMOG00000004754 #22	ENSGMOG00000033420	ENSGMOG00000004714 #23	ENSGMOG00000030079	ENSGMOG00000033196	ENSGMOG00000032505	ENSGMOG00000025064	ENSGMOG00000030305	ENSGMOG00000033747	ENSGMOG00000027403	ENSGMOG00000022452	ENSGMOG00000033556	ENSGMOG00000012715	KLHL34 (ENSGMOG00000025982)	smpx (ENSGMOG00000012730)	mbtps2 (ENSGMOG00000012735)
Protacanthopterygii	ANCESTRAL SPECIES	70													ENSGT00940000155886	ENSGT00940000159562	ENSGT00990000205902	ENSGT01030000234598.a.a.a.a #22	ENSGT00940000160853 #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b	ENSGT00390000000076	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	207	ENSGT00940000161675	ENSGT00970000197122.a	ENSGT00940000155929.a.b.a.b	ENSGT00390000013063.v	ENSGT00940000180146	ENSGT00940000158820	ENSGT00940000164809	ENSGT01100000263533.b.b.a.a.a.b.a.a.b	ENSGT00940000164239.b.a	ENSGT01100000263538.A.b	ENSGT00940000164100.B	ENSGT00500000045505.a.e	ENSGT00940000155886.r	ENSGT00990000205902.b.a	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c #22	ENSGT00940000160853.f #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00510000046981.b.b	ENSGT00510000046981.a.a.f	ENSGT00940000160075.e	ENSGT00390000002757.e.a	ENSGT00620000088018.u	ENSGT00990000204738
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000157332.o	ENSGT00940000157443.d.b.a	ENSGT00940000158810.d	ENSGT00390000015759.b	ENSGT00390000009110.b	ENSGT00550000074787.d.a.a.c	ENSGT00940000158013.m	ENSGT00940000156558.a.a.d	ENSGT00940000154110.b.a	ENSGT00530000063679.A.k	ENSGT00940000159661.k.a	ENSGT00940000165845.c.a	ENSGT00940000155886.r	ENSGT00990000205902.b.a	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c #22	ENSGT00940000160853.f #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.a
Salmo	ANCESTRAL SPECIES	34	ENSGT00940000158530.x.b	ENSGT00940000157332.o	ENSGT00940000157443.d.b.a	ENSGT00940000158810.d	ENSGT00390000015759.b	ENSGT00390000009110.b	ENSGT00550000074787.d.a.a.c	ENSGT00940000158013.m	ENSGT00940000156558.a.a.d	ENSGT00940000154110.b.a	ENSGT00530000063679.A.k	ENSGT00940000159661.k.a	ENSGT00940000165845.c.a	ENSGT00940000155886.r	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c #22	ENSGT00940000160853.f #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT01090000260281.b.b.a	ENSGT00980000198875.g.a	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.a	ENSGT00390000005330.g	ENSGT00950000183121.b.b.b.b.w.e.b
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000097118	boc (ENSSSAG00000076978)	USF3 (ENSSSAG00000099363)	naa50 (ENSSSAG00000077013)	VATA (ENSSSAG00000077020)	GRAMD1C (ENSSSAG00000077029)	zdhhc23b (ENSSSAG00000095338)	ccdc191 (ENSSSAG00000077035)	qtrt2 (ENSSSAG00000077043)	ENSSSAG00000120734	drd3 (ENSSSAG00000077050)	ENSSSAG00000104226	ENSSSAG00000077086	sh3k1 (ENSSSAG00000077089)	ENSSSAG00000103972	tfr1b (ENSSSAG00000116067) #22	ENSSSAG00000088452 #23	ENSSSAG00000099188	ENSSSAG00000094346	ENSSSAG00000077888	ENSSSAG00000077895	apod (ENSSSAG00000077906)	ENSSSAG00000080287	ENSSSAG00000077916	ENSSSAG00000106166	ENSSSAG00000077932	KLHL15 (ENSSSAG00000077983)	ENSSSAG00000099404	apoob (ENSSSAG00000097184)	ENSSSAG00000112612	SAT1 (ENSSSAG00000078009)
River trout	MODERN SPECIES	36	rnf6 (ENSSTUG00000043621)	ATP8A2 (ENSSTUG00000040768)	SHISA2 (ENSSTUG00000040604)	boc (ENSSTUG00000040429)	USF3 (ENSSTUG00000040423)	naa50 (ENSSTUG00000040341)	ATP6V1A (ENSSTUG00000040322)	GRAMD1C (ENSSTUG00000040299)	zdhhc23b (ENSSTUG00000040288)	ccdc191 (ENSSTUG00000040269)	qtrt2 (ENSSTUG00000040252)	drd3 (ENSSTUG00000040051)	ENSSTUG00000040024	ENSSTUG00000040016	ENSSTUG00000039972	tfr1b (ENSSTUG00000039772) #22	ENSSTUG00000039758	and1 (ENSSTUG00000039750)	ENSSTUG00000039742	ENSSTUG00000039734	otos (ENSSTUG00000039728)	apodb (ENSSTUG00000039682)	ENSSTUG00000039661	eif2s3 (ENSSTUG00000039599)	klhl15 (ENSSTUG00000039571)	apoob (ENSSTUG00000039550)	sat1b (ENSSTUG00000039524)	ACOT9 (ENSSTUG00000039413)	sat1b (ENSSTUG00000039386)	ENSSTUG00000039381	ENSSTUG00000039377
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00940000157443.d.b.a	ENSGT00940000158810.d	ENSGT00390000015759.b	ENSGT00390000009110.b	ENSGT00550000074787.d.a.a.c	ENSGT00940000158013.m	ENSGT00940000156558.a.a.d	ENSGT00940000154110.b.a	ENSGT00530000063679.A.k	ENSGT00940000159661.k.a	ENSGT00940000159661.l	ENSGT00940000165845.c.a	ENSGT00940000155886.r	ENSGT00990000205902.b.a	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c #22	ENSGT00940000160853.f #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076.z.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT01010000229159	ENSGT00940000157443.d.b.a	ENSGT00940000158810.d	ENSGT00390000015759.b	ENSGT00390000009110.b	ENSGT00550000074787.d.a.a.c	ENSGT00940000158013.m	ENSGT00940000156558.a.a.d	ENSGT00940000154110.b.a	ENSGT00530000063679.A.k	ENSGT00940000159661.k.a	ENSGT00940000159661.l	ENSGT00940000165845.c.a	ENSGT00940000155886.r	ENSGT00990000205902.b.b	ENSGT01030000234598.a.a.a.a.c #22	ENSGT00940000160853.f #23	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076.z.b	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	21	ENSOTSG00005011675	FLT3 (ENSOTSG00005011674)	pan3 (ENSOTSG00005011665)	ENSOTSG00005011663	flt1 (ENSOTSG00005011660)	SPATA13 (ENSOTSG00005011658)	ENSOTSG00005011656	c1qtnf9 (ENSOTSG00005011655)	tagln3a (ENSOTSG00005011654)	tagln3b (ENSOTSG00005011653)	ENSOTSG00005011651	ythdf3 (ENSOTSG00005011650)	ENSOTSG00005011649	ENSOTSG00005011647	ENSOTSG00005011645	ENSOTSG00005011642 #22	ENSOTSG00005011641	and1 (ENSOTSG00005011640)	ENSOTSG00005011639	apodb (ENSOTSG00005011638)	eif2s3 (ENSOTSG00005011637)	klhl15 (ENSOTSG00005011636)	ACOT9 (ENSOTSG00005011625)	sat1b (ENSOTSG00005011622)	ENSOTSG00005011619	ENSOTSG00005011618	ENSOTSG00005011617	ENSOTSG00005011616	ENSOTSG00005011614	ENSOTSG00005011612	vipr2 (ENSOTSG00005011610)
Chinook salmon	MODERN SPECIES	2992													ENSOTSG00005040481	ENSOTSG00005040480	ENSOTSG00005040478	ENSOTSG00005040477 #22	ENSOTSG00005040476	ENSOTSG00005040475	and1 (ENSOTSG00005040474)	ENSOTSG00005040472	apodb (ENSOTSG00005040470)	ENSOTSG00005040467	ENSOTSG00005040463	eif2s3 (ENSOTSG00005040462)	klhl15 (ENSOTSG00005040460)	APOO (ENSOTSG00005040459)	ACOT9 (ENSOTSG00005039546)	sat1b (ENSOTSG00005039542)	ENSOTSG00005039537	ENSOTSG00005039535	ENSOTSG00005045813
Coho salmon	MODERN SPECIES	2	ENSOKIG00005009778	SHISA2 (ENSOKIG00005009806)	boc (ENSOKIG00005009821)	USF3 (ENSOKIG00005009877)	naa50 (ENSOKIG00005009890)	ATP6V1A (ENSOKIG00005009915)	GRAMD1C (ENSOKIG00005009950)	zdhhc23b (ENSOKIG00005009963)	ccdc191 (ENSOKIG00005009975)	qtrt2 (ENSOKIG00005010019)	drd3 (ENSOKIG00005010039)	ENSOKIG00005010047	ENSOKIG00005010055	ENSOKIG00005010068	ENSOKIG00005010104	tfr1b (ENSOKIG00005010144) #22	TNK2 (ENSOKIG00005010208) #23	ENSOKIG00005010287	and1 (ENSOKIG00005010301)	cops9 (ENSOKIG00005010335)	apodb (ENSOKIG00005002065)	ENSOKIG00005002079	ENSOKIG00005002103	ENSOKIG00005002244	ENSOKIG00005002630	KLHL15 (ENSOKIG00005002642)	apoob (ENSOKIG00005002661)	SAT1 (ENSOKIG00005002682)	ACOT9 (ENSOKIG00005002720)	pdha1b (ENSOKIG00005002760)	ENSOKIG00005002940
Rainbow trout	MODERN SPECIES	6	boc (ENSOMYG00000018829)	USF3 (ENSOMYG00000018979)	naa50 (ENSOMYG00000018997)	ENSOMYG00000056390	ATP6V1A (ENSOMYG00000019036)	GRAMD1C (ENSOMYG00000003575)	zdhhc23b (ENSOMYG00000003663)	ccdc191 (ENSOMYG00000010946)	qtrt2 (ENSOMYG00000010936)	ENSOMYG00000068589	drd3 (ENSOMYG00000010925)	ENSOMYG00000010899	ENSOMYG00000010891	ENSOMYG00000059903	ENSOMYG00000075571	tfr1b (ENSOMYG00000010849) #22	ENSOMYG00000052467 #23	ENSOMYG00000071365	and1 (ENSOMYG00000010833)	ENSOMYG00000010821	apodb (ENSOMYG00000010815)	ENSOMYG00000059936	ENSOMYG00000070606	ENSOMYG00000010797	ENSOMYG00000070468	ENSOMYG00000010773	KLHL15 (ENSOMYG00000010735)	ENSOMYG00000067769	APOO (ENSOMYG00000010708)	ACOT9 (ENSOMYG00000010388)	sat1 (ENSOMYG00000010129)
Salmoninae	ANCESTRAL SPECIES	157				ENSGT00940000158810.c	ENSGT00390000015759.a	ENSGT00390000009110.a	ENSGT00550000074787.d.a.a.d	ENSGT00940000158013.n	ENSGT00940000156558.a.a.c	ENSGT00940000154110.b.b	ENSGT00530000063679.A.l	ENSGT00940000159661.k.b	ENSGT00940000155886.q	ENSGT00940000159562	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d #22	ENSGT01030000234826	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00980000198875.g.a	ENSGT00390000011600.h	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00940000153430.a.a.i	ENSGT00530000063174.a.k.d
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00940000157443.d.b.b	ENSGT00390000006207	ENSGT01000000219382	ENSGT00940000158810.c	ENSGT00390000015759.a	ENSGT00390000009110.a	ENSGT00550000074787.d.a.a.d	ENSGT00940000158013.n	ENSGT00940000156558.a.a.c	ENSGT00940000154110.b.b	ENSGT00530000063679.A.l	ENSGT00940000159661.k.b	ENSGT00940000155886.q	ENSGT00940000159562	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d #22	ENSGT00940000160853.e #23	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b.b	ENSGT01030000235646.a
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000157332.p	ENSGT00940000157443.d.b.b	ENSGT00390000006207	ENSGT00940000158810.c	ENSGT00390000015759.a	ENSGT00390000009110.a	ENSGT00550000074787.d.a.a.d	ENSGT00940000158013.n	ENSGT00940000156558.a.a.c	ENSGT00940000154110.b.b	ENSGT00530000063679.A.l	ENSGT00940000159661.k.b	ENSGT00940000155886.q	ENSGT00940000159562	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d #22	ENSGT00940000160853.e #23	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h
River trout	MODERN SPECIES	11	cdk8 (ENSSTUG00000014250)	rnf6 (ENSSTUG00000014495)	ATP8A2 (ENSSTUG00000014529)	SHISA2 (ENSSTUG00000015716)	boc (ENSSTUG00000015721)	USF3 (ENSSTUG00000015751)	naa50 (ENSSTUG00000015763)	ATP6V1A (ENSSTUG00000015817)	GRAMD1C (ENSSTUG00000015844)	zdhhc23b (ENSSTUG00000015857)	ccdc191 (ENSSTUG00000015862)	qtrt2 (ENSSTUG00000015874)	drd3 (ENSSTUG00000015957)	ENSSTUG00000015970	ENSSTUG00000015981	tfr1b (ENSSTUG00000015992) #22	TNK2 (ENSSTUG00000016035) #23	adipoqa (ENSSTUG00000016043)	and1 (ENSSTUG00000016052)	cops9 (ENSSTUG00000016062)	otos (ENSSTUG00000016077)	ENSSTUG00000016084	ENSSTUG00000016103	ENSSTUG00000016112	ENSSTUG00000016124	ENSSTUG00000016133	ENSSTUG00000026294	eif2s3 (ENSSTUG00000026335)	klhl15 (ENSSTUG00000026390)	apoob (ENSSTUG00000026467)	sat1b (ENSSTUG00000026547)
Atlantic salmon	MODERN SPECIES	10	boc (ENSSSAG00000008286)	USF3 (ENSSSAG00000008268)	naa50 (ENSSSAG00000008252)	ATP6V1A (ENSSSAG00000008233)	GRAMD1C (ENSSSAG00000008222)	zdhhc23b (ENSSSAG00000103173)	ENSSSAG00000111365	ccdc191 (ENSSSAG00000008201)	qtrt2 (ENSSSAG00000008183)	ENSSSAG00000110103	drd3 (ENSSSAG00000008176)	ENSSSAG00000008158	map3k15 (ENSSSAG00000006435)	ENSSSAG00000091660	ENSSSAG00000116012	tfr1b (ENSSSAG00000006165) #22	ENSSSAG00000097416 #23	adipoqa (ENSSSAG00000121226)	and1 (ENSSSAG00000080293)	cops9 (ENSSSAG00000080290)	otos (ENSSSAG00000114510)	ENSSSAG00000116263	ENSSSAG00000112922	ENSSSAG00000108841	ENSSSAG00000080284	ENSSSAG00000080282	ENSSSAG00000080279	if2g (ENSSSAG00000080260)	ENSSSAG00000084918	KLHL15 (ENSSSAG00000080245)	ENSSSAG00000080233
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00390000006207	ENSGT01000000219382	ENSGT00940000158810.c	ENSGT00390000015759.a	ENSGT00390000009110.a	ENSGT00550000074787.d.a.a.d	ENSGT00940000158013.n	ENSGT00940000156558.a.a.c	ENSGT00940000154110.b.b	ENSGT01010000229730	ENSGT00530000063679.A.l	ENSGT00940000159661.k.b	ENSGT00940000155886.q	ENSGT00940000159562	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d #22	ENSGT00940000160853.e #23	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000050986	boc (ENSOMYG00000040016)	USF3 (ENSOMYG00000040022)	naa50 (ENSOMYG00000040038)	ATP6V1A (ENSOMYG00000040082)	GRAMD1C (ENSOMYG00000040123)	zdhhc23b (ENSOMYG00000040152)	ENSOMYG00000012618	ENSOMYG00000040187	ENSOMYG00000072682	ENSOMYG00000040199	ENSOMYG00000040223	ENSOMYG00000040243	ccl20b (ENSOMYG00000040252)	ENSOMYG00000066887	tfr1b (ENSOMYG00000040258) #22	ENSOMYG00000062378 #23	adipoqa (ENSOMYG00000065861)	and1 (ENSOMYG00000040291)	cops9 (ENSOMYG00000040301)	otos (ENSOMYG00000064635)	ENSOMYG00000040343	ENSOMYG00000040369	ENSOMYG00000040380	ENSOMYG00000040401	ENSOMYG00000040430	KLHL15 (ENSOMYG00000040457)	apoob (ENSOMYG00000040468)	SAT1 (ENSOMYG00000040494)	ACOT9 (ENSOMYG00000040549)	ENSOMYG00000040609
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00940000157443.d.b.b	ENSGT00390000006207	ENSGT00940000158810.c	ENSGT00390000015759.a	ENSGT00390000009110.a	ENSGT00550000074787.d.a.a.d	ENSGT00940000158013.n	ENSGT00940000156558.a.a.c	ENSGT00940000154110.b.b	ENSGT01010000229730	ENSGT00530000063679.A.l	ENSGT00940000159661.k.b	ENSGT00940000155886.q	ENSGT00940000159562	ENSGT00990000205902.a	ENSGT01030000234598.a.a.a.a.d #22	ENSGT00940000160853.e #23	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h
Coho salmon	MODERN SPECIES	9	spice1 (ENSOKIG00005015143)	boc (ENSOKIG00005015118)	USF3 (ENSOKIG00005015086)	naa50 (ENSOKIG00005015031)	ATP6V1A (ENSOKIG00005014983)	GRAMD1C (ENSOKIG00005014963)	zdhhc23b (ENSOKIG00005014953)	ccdc191 (ENSOKIG00005014926)	ENSOKIG00005014918	ENSOKIG00005014909	drd3 (ENSOKIG00005014903)	ENSOKIG00005014900	ENSOKIG00005014891	ENSOKIG00005014884	ENSOKIG00005014874	tfr1b (ENSOKIG00005014790) #22	ENSOKIG00005014768 #23	adipoqa (ENSOKIG00005014752)	and1 (ENSOKIG00005014746)	cops9 (ENSOKIG00005014741)	otos (ENSOKIG00005014736)	ENSOKIG00005014713	ENSOKIG00005014705	ENSOKIG00005050559	ENSOKIG00005050554	eif2s3 (ENSOKIG00005050547)	klhl15 (ENSOKIG00005050539)	apoob (ENSOKIG00005050531)	SAT1 (ENSOKIG00005050527)	ACOT9 (ENSOKIG00005050519)	pdha1b (ENSOKIG00005050506)
Chinook salmon	MODERN SPECIES	7	ATP8A2 (ENSOTSG00005004129)	SHISA2 (ENSOTSG00005016045)	spice1 (ENSOTSG00005016047)	boc (ENSOTSG00005016049)	USF3 (ENSOTSG00005016054)	naa50 (ENSOTSG00005016056)	ATP6V1A (ENSOTSG00005016154)	GRAMD1C (ENSOTSG00005016168)	zdhhc23b (ENSOTSG00005016169)	ENSOTSG00005016171	ENSOTSG00005016173	drd3 (ENSOTSG00005016174)	ENSOTSG00005016175	MAP3K15 (ENSOTSG00005016178)	ENSOTSG00005016181	tfr1b (ENSOTSG00005016184) #22	ENSOTSG00005016185	adipoqa (ENSOTSG00005016197)	and1 (ENSOTSG00005016217)	cops9 (ENSOTSG00005016218)	otos (ENSOTSG00005016219)	ENSOTSG00005016220	ENSOTSG00005016222	ENSOTSG00005016225	eif2s3 (ENSOTSG00005016226)	klhl15 (ENSOTSG00005016232)	apoob (ENSOTSG00005016238)	sat1b (ENSOTSG00005016249)	ACOT9 (ENSOTSG00005016271)	pdha1b (ENSOTSG00005016793)	RPS6KA3 (ENSOTSG00005019066)
Huchen	MODERN SPECIES	2053																tfr1b (ENSHHUG00000002394) #22	ENSHHUG00000002383 #23	ENSHHUG00000002375	adipoqa (ENSHHUG00000002356)	and1 (ENSHHUG00000002348)	ENSHHUG00000002334	otos (ENSHHUG00000002312)	ENSHHUG00000002213	ENSHHUG00000002205	ENSHHUG00000002192	ENSHHUG00000002175	ENSHHUG00000002156	ENSHHUG00000002147	eif2s3 (ENSHHUG00000002083)	klhl15 (ENSHHUG00000002049)	apoob (ENSHHUG00000001975)
Northern pike	MODERN SPECIES	20	spice1 (ENSELUG00000013826)	ENSELUG00000030548	boc (ENSELUG00000013746)	USF3 (ENSELUG00000013708)	naa50 (ENSELUG00000013657)	ATP6V1A (ENSELUG00000013615)	GRAMD1C (ENSELUG00000013577)	zdhhc23b (ENSELUG00000013562)	ccdc191 (ENSELUG00000013546)	qtrt2 (ENSELUG00000013496)	drd3 (ENSELUG00000013460)	ENSELUG00000013449	ENSELUG00000013433	MAP3K15 (ENSELUG00000013343)	ENSELUG00000013185	tfr1b (ENSELUG00000013175) #22	TNK2 (ENSELUG00000013145) #23	ENSELUG00000013115	and1 (ENSELUG00000013102)	cops9 (ENSELUG00000013075)	otos (ENSELUG00000013059)	apodb (ENSELUG00000013046)	ENSELUG00000033979	ENSELUG00000012949	ENSELUG00000012983	eif2s3 (ENSELUG00000012926)	klhl15 (ENSELUG00000012872)	apoob (ENSELUG00000012820)	sat1b (ENSELUG00000012698)	acot9.2 (ENSELUG00000012671)	pdha1b (ENSELUG00000012632)
Osteoglossiformes	ANCESTRAL SPECIES	814															ENSGT01090000260902.a	ENSGT01030000234598.a.a.a.a #22
Asian bonytongue	MODERN SPECIES	10	PLD1 (ENSSFOG00015007617)	TNIK (ENSSFOG00015007735)	EIF5A2 (ENSSFOG00015027484)	ENSSFOG00015007922	ENSSFOG00015007954	prkci (ENSSFOG00015032857)	skilb (ENSSFOG00015029120)	ENSSFOG00015008027	ENSSFOG00015028837	ENSSFOG00015008059	apodb (ENSSFOG00015008080)	ENSSFOG00015008412	ENSSFOG00015008211	ENSSFOG00015008235	ENSSFOG00015008249	tfr1b (ENSSFOG00015008261) #22	ENSSFOG00015008297	ENSSFOG00015008341	adipoqa (ENSSFOG00015026354)	and1 (ENSSFOG00015024719)	ENSSFOG00015030608	ek1 (ENSSFOG00015008441)	HS6ST1 (ENSSFOG00015028994)	plekhb2 (ENSSFOG00015028146)	ing5a (ENSSFOG00015032338)	cep19 (ENSSFOG00015008612) #8	pigx (ENSSFOG00015008661) #7	pak2b (ENSSFOG00015008688)	ENSSFOG00015029866	rpp21 (ENSSFOG00015008742)	aqp12 (ENSSFOG00015032336)
P. kingsleyae	MODERN SPECIES	727									ENSPKIG00000020465	ENSPKIG00000020475	ENSPKIG00000020481	ENSPKIG00000020508	ENSPKIG00000020543	ENSPKIG00000020557	ENSPKIG00000020576	ENSPKIG00000020601 #22	ENSPKIG00000020686
Osteoglossocephalai	ANCESTRAL SPECIES	482															ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00440000033870.b
Clupeocephala	ANCESTRAL SPECIES	155															ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT01030000234826	ENSGT00940000160853 #23	ENSGT00440000033870.b	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.b	ENSGT00940000157053.v	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b
Otomorpha	ANCESTRAL SPECIES	146	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000162100	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.a	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o
Clupeiformes	ANCESTRAL SPECIES	104	ENSGT00940000165457.a.b	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000162100	ENSGT00940000160300.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00940000159828.b.b	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325
Atlantic herring	MODERN SPECIES	14	parla (ENSCHAG00000016515)	ENSCHAG00000016523	cldn15la (ENSCHAG00000016549)	saga (ENSCHAG00000016556)	ENSCHAG00000016628	proca (ENSCHAG00000016707)	DUSP28 (ENSCHAG00000016713)	WDR33 (ENSCHAG00000016723)	sft2d3 (ENSCHAG00000016751)	ENSCHAG00000016753	ENSCHAG00000016771	ENSCHAG00000017123	ENSCHAG00000017670	dlg1b (ENSCHAG00000017806)	ENSCHAG00000021636	tfr1a (ENSCHAG00000021653) #22	ENSCHAG00000021910	ENSCHAG00000021940	ENSCHAG00000022066	ENSCHAG00000022623	ENSCHAG00000022636	ENSCHAG00000022721	ENSCHAG00000023278	ENSCHAG00000023296	ENSCHAG00000023316	ENSCHAG00000023749	adipoqb (ENSCHAG00000023950)	d2hgdh (ENSCHAG00000023960)	acvr1l (ENSCHAG00000024046)	otomp (ENSCHAG00000024069)	hs6st1a (ENSCHAG00000024080)
Denticle herring	MODERN SPECIES	14	cdk5 (ENSDCDG00000016883)	txndc12 (ENSDCDG00000017055)	gipc2 (ENSDCDG00000017057)	ENSDCDG00000017059	dnajb4 (ENSDCDG00000017062)	ENSDCDG00000017076	miga1 (ENSDCDG00000017115)	usp33 (ENSDCDG00000017122)	zzz3 (ENSDCDG00000017129)	ak5 (ENSDCDG00000017139)	pigk (ENSDCDG00000017167)	ST6GALNAC5 (ENSDCDG00000018420)	st6galnac3 (ENSDCDG00000018423)	cope (ENSDCDG00000018431)	fastk (ENSDCDG00000018490)	tfr1a (ENSDCDG00000018503) #22	ENSDCDG00000018517	adipoqb (ENSDCDG00000018534)	ENSDCDG00000018542	rab18b (ENSDCDG00000018597)	ENSDCDG00000018611	mfsd14a2 (ENSDCDG00000018649)	insra (ENSDCDG00000019217)	arhgef18a (ENSDCDG00000028320)	sppl2 (ENSDCDG00000028324)	ENSDCDG00000028516	DAPK3 (ENSDCDG00000028517)	ENSDCDG00000028518	ENSDCDG00000028520	ENSDCDG00000028525	prkci (ENSDCDG00000028549)
Otophysi	ANCESTRAL SPECIES	5	ENSGT00940000154505.B	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000162100	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000159409	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00940000159828.b.b	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00400000022086.a	ENSGT00940000156182	ENSGT00940000155450.c
Characiphysae	ANCESTRAL SPECIES	55	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00400000022086.a	ENSGT00940000156182	ENSGT00940000155450.c	ENSGT00940000157532.b
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	48	ENSGT00510000048354	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b.a #22	ENSGT01030000234598.a.a.a.b.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00530000063835.b.e	ENSGT00400000022086.a	ENSGT00940000156182
Characoidei	ANCESTRAL SPECIES	58	ENSGT00510000048354	ENSGT00940000166956	ENSGT00940000175729	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT01030000234598.a.a.a.b.a #22	ENSGT01030000234598.a.a.a.b.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00530000063835.b.e	ENSGT00400000022086.a	ENSGT00940000156182
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	1293														tfr1a (ENSPNAG00000021468) #22	tfr1a (ENSPNAG00000021413) #22	tfr1a (ENSPNAG00000021403) #22	tfr1a (ENSPNAG00000021383) #22
Red-bellied piranha	MODERN SPECIES	1293													tfr1a (ENSPNAG00000021383) #22	tfr1a (ENSPNAG00000021403) #22	tfr1a (ENSPNAG00000021413) #22	tfr1a (ENSPNAG00000021468) #22
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000019154	ENSAMXG00000019151	DUSP28 (ENSAMXG00000019148)	WDR33 (ENSAMXG00000019144)	ENSAMXG00000025012	sft2d3 (ENSAMXG00000025010)	ENSAMXG00000035296	ENSAMXG00000037049	ENSAMXG00000008035	PEX5L (ENSAMXG00000031319)	ENSAMXG00000037157	phb2a (ENSAMXG00000016778)	ptmab (ENSAMXG00000032275)	ENSAMXG00000038403	ENSAMXG00000030735	tfr1a (ENSAMXG00000039429) #22	tfr1a (ENSAMXG00000035675) #22	ENSAMXG00000016898	bambib (ENSAMXG00000030512)	ENSAMXG00000012218	ENSAMXG00000033586	mkxb (ENSAMXG00000012250)	rab18b (ENSAMXG00000042073)	PTCHD3 (ENSAMXG00000012289)	yme1l1b (ENSAMXG00000012316)	mib1 (ENSAMXG00000012348)	ENSAMXG00000029846	gata6 (ENSAMXG00000012389)	cables1 (ENSAMXG00000012400)	npc1 (ENSAMXG00000012420)	egfra (ENSAMXG00000012474)
Electric eel	MODERN SPECIES	21	ENSEEEG00000011235	cldn15la (ENSEEEG00000011223)	saga (ENSEEEG00000011221)	ENSEEEG00000011180	ENSEEEG00000011179	ENSEEEG00000011178	DUSP28 (ENSEEEG00000011177)	WDR33 (ENSEEEG00000011175)	sft2d3 (ENSEEEG00000011171)	ENSEEEG00000011170	ENSEEEG00000011129	ENSEEEG00000011120	phb2a (ENSEEEG00000010959)	ENSEEEG00000007063	ENSEEEG00000006937	tfr1a (ENSEEEG00000006925) #22	tfr1a (ENSEEEG00000006918) #22	ENSEEEG00000006917	ENSEEEG00000006913 #23	ENSEEEG00000006911	ENSEEEG00000006909	ENSEEEG00000006906	mkxb (ENSEEEG00000006905)	rab18b (ENSEEEG00000006895)	PTCHD3 (ENSEEEG00000006890)	yme1l1b (ENSEEEG00000006859)	mib1 (ENSEEEG00000006683)	gata6 (ENSEEEG00000006671)	cables1 (ENSEEEG00000006651)	npc1 (ENSEEEG00000006127)	egfra (ENSEEEG00000004939)
Characiphysae_b	ANCESTRAL SPECIES	48	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b.a #22	ENSGT01030000234598.a.a.a.b.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00530000063835.b.e	ENSGT00400000022086.a	ENSGT00940000156182	ENSGT00940000155450.c
Characoidei	ANCESTRAL SPECIES	58	ENSGT00940000166956	ENSGT00940000175729	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154474.C	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000164867.a	ENSGT01030000234598.a.a.a.b.a #22	ENSGT01030000234598.a.a.a.b.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00940000154101.b.c.a	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00530000063835.b.e	ENSGT00400000022086.a	ENSGT00940000156182	ENSGT00940000155450.c
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	1293													tfr1a (ENSPNAG00000021468) #22	tfr1a (ENSPNAG00000021413) #22	tfr1a (ENSPNAG00000021403) #22	tfr1a (ENSPNAG00000021383) #22
Red-bellied piranha	MODERN SPECIES	1293														tfr1a (ENSPNAG00000021383) #22	tfr1a (ENSPNAG00000021403) #22	tfr1a (ENSPNAG00000021413) #22	tfr1a (ENSPNAG00000021468) #22
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000019151	DUSP28 (ENSAMXG00000019148)	WDR33 (ENSAMXG00000019144)	ENSAMXG00000025012	sft2d3 (ENSAMXG00000025010)	ENSAMXG00000035296	ENSAMXG00000037049	ENSAMXG00000008035	PEX5L (ENSAMXG00000031319)	ENSAMXG00000037157	phb2a (ENSAMXG00000016778)	ptmab (ENSAMXG00000032275)	ENSAMXG00000038403	ENSAMXG00000030735	tfr1a (ENSAMXG00000039429) #22	tfr1a (ENSAMXG00000035675) #22	ENSAMXG00000016898	bambib (ENSAMXG00000030512)	ENSAMXG00000012218	ENSAMXG00000033586	mkxb (ENSAMXG00000012250)	rab18b (ENSAMXG00000042073)	PTCHD3 (ENSAMXG00000012289)	yme1l1b (ENSAMXG00000012316)	mib1 (ENSAMXG00000012348)	ENSAMXG00000029846	gata6 (ENSAMXG00000012389)	cables1 (ENSAMXG00000012400)	npc1 (ENSAMXG00000012420)	egfra (ENSAMXG00000012474)	MMP16 (ENSAMXG00000036120)
Electric eel	MODERN SPECIES	21	cldn15la (ENSEEEG00000011223)	saga (ENSEEEG00000011221)	ENSEEEG00000011180	ENSEEEG00000011179	ENSEEEG00000011178	DUSP28 (ENSEEEG00000011177)	WDR33 (ENSEEEG00000011175)	sft2d3 (ENSEEEG00000011171)	ENSEEEG00000011170	ENSEEEG00000011129	ENSEEEG00000011120	phb2a (ENSEEEG00000010959)	ENSEEEG00000007063	ENSEEEG00000006937	tfr1a (ENSEEEG00000006925) #22	tfr1a (ENSEEEG00000006918) #22	ENSEEEG00000006917	ENSEEEG00000006913 #23	ENSEEEG00000006911	ENSEEEG00000006909	ENSEEEG00000006906	mkxb (ENSEEEG00000006905)	rab18b (ENSEEEG00000006895)	PTCHD3 (ENSEEEG00000006890)	yme1l1b (ENSEEEG00000006859)	mib1 (ENSEEEG00000006683)	gata6 (ENSEEEG00000006671)	cables1 (ENSEEEG00000006651)	npc1 (ENSEEEG00000006127)	egfra (ENSEEEG00000004939)	ENSEEEG00000004885
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	12	PROC (ENSIPUG00000012335)	ENSIPUG00000012321	ENSIPUG00000012297	dusp28 (ENSIPUG00000012283)	sft2d3 (ENSIPUG00000012260)	wdr33 (ENSIPUG00000012209)	ENSIPUG00000012195	ENSIPUG00000012179	ENSIPUG00000012134	ENSIPUG00000012060	phb2 (ENSIPUG00000012007)	ptmab (ENSIPUG00000011991)	NCBP2AS2 (ENSIPUG00000011982)	ENSIPUG00000011414	tfr1a (ENSIPUG00000011340) #22	tfr1a (ENSIPUG00000011309) #22	tnk2 (ENSIPUG00000011162)	ENSIPUG00000011127	BAMBI (ENSIPUG00000011109)	ENSIPUG00000011072	ENSIPUG00000010962	mkx (ENSIPUG00000010927)	rab18b (ENSIPUG00000010859)	PTCHD3 (ENSIPUG00000010831)	yme1l1 (ENSIPUG00000010769)	mib1 (ENSIPUG00000010639)	gata6 (ENSIPUG00000010617)	CABLES1 (ENSIPUG00000010591)	npc1 (ENSIPUG00000010422)	egfr (ENSIPUG00000010294)	MMP16 (ENSIPUG00000010263)
Channel catfish	MODERN SPECIES	12	ENSIPUG00000012350	PROC (ENSIPUG00000012335)	ENSIPUG00000012321	ENSIPUG00000012297	dusp28 (ENSIPUG00000012283)	sft2d3 (ENSIPUG00000012260)	wdr33 (ENSIPUG00000012209)	ENSIPUG00000012195	ENSIPUG00000012179	ENSIPUG00000012134	ENSIPUG00000012060	phb2 (ENSIPUG00000012007)	ptmab (ENSIPUG00000011991)	NCBP2AS2 (ENSIPUG00000011982)	ENSIPUG00000011414	tfr1a (ENSIPUG00000011340) #22	tfr1a (ENSIPUG00000011309) #22	tnk2 (ENSIPUG00000011162)	ENSIPUG00000011127	BAMBI (ENSIPUG00000011109)	ENSIPUG00000011072	ENSIPUG00000010962	mkx (ENSIPUG00000010927)	rab18b (ENSIPUG00000010859)	PTCHD3 (ENSIPUG00000010831)	yme1l1 (ENSIPUG00000010769)	mib1 (ENSIPUG00000010639)	gata6 (ENSIPUG00000010617)	CABLES1 (ENSIPUG00000010591)	npc1 (ENSIPUG00000010422)	egfr (ENSIPUG00000010294)
Cyprinoidei	ANCESTRAL SPECIES	125	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B	ENSGT00940000161528	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000162100	ENSGT00390000013727.d.b	ENSGT01000000214413.b.a.a.q.b	ENSGT00940000155931.b	ENSGT00950000183070.a.a.mb.b.g	ENSGT00950000183307	ENSGT00940000159409	ENSGT00940000164867.a	ENSGT00390000001143	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156781	ENSGT00940000160814	ENSGT00940000156182	ENSGT00940000155450.c	ENSGT00940000157532.b	ENSGT00390000006960	ENSGT00940000161639.f
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	67		ENSGT00440000039055	ENSGT00940000155929.a.b.b	ENSGT00940000165457.a.b	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B.d	ENSGT00730000111130.y.a	ENSGT00940000160300.k.a	ENSGT00390000013727.d.b.f	ENSGT01000000214413.b.a.a.q.b.a	ENSGT00940000155931.b.a	ENSGT00950000183070.a.a.mb.b.g.b	ENSGT00940000164867.a	ENSGT00390000001143.s	ENSGT01030000234598.a.a.a.b.e #22	ENSGT00940000165248.d	ENSGT00940000154101.b.c.a.b	ENSGT00940000156232.a	ENSGT00940000156227.e.a	ENSGT00940000157325.kb	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o.b	ENSGT00940000156781.m.a	ENSGT00940000160814.e.a	ENSGT00400000022086.a.k.b	ENSGT00940000156182	ENSGT00940000155450.c.b	ENSGT00940000157532.b.a	ENSGT00390000006960.b	ENSGT00940000161639.f.b
Cyprininae_a	ANCESTRAL SPECIES	88	ENSGT00440000039055	ENSGT00940000155929.a.b.b	ENSGT00940000165457.a.b	ENSGT00940000166956	ENSGT00950000182887.C.b.a.m.a	ENSGT00940000154505.B.d	ENSGT00730000111130.y.a	ENSGT00940000160300.k.a	ENSGT00390000013727.d.b.f	ENSGT01000000214413.b.a.a.q.b.a	ENSGT00940000155931.b.a	ENSGT00950000183070.a.a.mb.a	ENSGT00950000183070.a.a.mb.b.g.b	ENSGT00940000164867.a	ENSGT00390000001143.s	ENSGT01030000234598.a.a.a.b.e #22	ENSGT00940000165248.d	ENSGT00940000154101.b.c.a.b	ENSGT00940000156232.a	ENSGT00940000156227.e.a	ENSGT00940000157325.kb	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o.b	ENSGT00940000156781.m.a	ENSGT00940000160814.e.a	ENSGT00400000022086.a.k.b	ENSGT00940000156182.a	ENSGT00940000155450.c.b	ENSGT00940000157532.b.a	ENSGT00390000006960.b	ENSGT00940000161639.f.b
Golden-line barbel	MODERN SPECIES	397		cldn15la (ENSSGRG00000050264)	ENSSGRG00000050261	DUSP28 (ENSSGRG00000050260)	wdr33 (ENSSGRG00000050259)	ENSSGRG00000050258	ENSSGRG00000050256	ENSSGRG00000050255	ENSSGRG00000050251	ENSSGRG00000050245	ENSSGRG00000050244	phb2a (ENSSGRG00000050243)	ENSSGRG00000050242	ENSSGRG00000047567	ENSSGRG00000047520	tfr1a (ENSSGRG00000047227) #22	ENSSGRG00000047220	ENSSGRG00000047218	bambib (ENSSGRG00000047216)	ENSSGRG00000047213	mkxb (ENSSGRG00000047212)	rab18b (ENSSGRG00000047032)	ENSSGRG00000047021	yme1l1b (ENSSGRG00000046484)	ENSSGRG00000046467	mib1 (ENSSGRG00000046312)	cables1 (ENSSGRG00000046305)	npc1 (ENSSGRG00000044870)
Common carp reference	MODERN SPECIES	21	ENSCCRG00000052844	ENSCCRG00000032978	cldn15la (ENSCCRG00000019073)	saga (ENSCCRG00000019115)	ENSCCRG00000053250	ENSCCRG00000039197	ENSCCRG00000018985	ENSCCRG00000073812	ENSCCRG00000007110	ENSCCRG00000007197	ENSCCRG00000007224	phb2a (ENSCCRG00000017977)	ENSCCRG00000081615	ENSCCRG00000058900	ENSCCRG00000049782	tfr1a (ENSCCRG00000055519) #22	ENSCCRG00000031932	ENSCCRG00000012858	ENSCCRG00000076006	ENSCCRG00000002705	mkxb (ENSCCRG00000056478)	rab18b (ENSCCRG00000018725)	yme1l1b (ENSCCRG00000002379)	mib1 (ENSCCRG00000036091)	gata6 (ENSCCRG00000013407)	cables1 (ENSCCRG00000056093)	egfra (ENSCCRG00000028255)	ENSCCRG00000029650	pter (ENSCCRG00000060921)	c1ql3b (ENSCCRG00000053440)	gpt (ENSCCRG00000042660)
Goldfish	MODERN SPECIES	11	ENSCARG00000013089	ENSCARG00000013093	ENSCARG00000013095	ENSCARG00000013098	ENSCARG00000013102	saga (ENSCARG00000013110)	proca (ENSCARG00000013127)	WDR33 (ENSCARG00000013139)	ENSCARG00000013180	ENSCARG00000013191	ENSCARG00000013200	phb2a (ENSCARG00000013225)	ENSCARG00000013482	dlg1b (ENSCARG00000013674)	ENSCARG00000020138	tfr1a (ENSCARG00000020163) #22	ENSCARG00000020367	ENSCARG00000020445	ENSCARG00000020497	mkxb (ENSCARG00000020505)	rab18b (ENSCARG00000020514)	yme1l1b (ENSCARG00000020569)	mib1 (ENSCARG00000021981)	bpnt2 (ENSCARG00000022146)	ENSCARG00000022170	ENSCARG00000022172	pbx1a (ENSCARG00000005350)	glula (ENSCARG00000005562)	kncn (ENSCARG00000005579)	elovl1a (ENSCARG00000005583)	cdc20 (ENSCARG00000005591)
Cyprininae	ANCESTRAL SPECIES	570				ENSGT00940000154505.B.c	ENSGT00940000161528	ENSGT00730000111130.y.b	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000160300.k.b	ENSGT00390000013727.d.b.e	ENSGT01000000214413.b.a.a.q.b.b	ENSGT00940000155931.b.b	ENSGT00950000183070.a.a.mb.b.g.a	ENSGT00940000159409	ENSGT00390000001143.t	ENSGT01030000234598.a.a.a.b.f #22	ENSGT00940000165248.c	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00940000159828.b.b	ENSGT00940000154101.b.c.a.a	ENSGT00440000037780.b.a
Cyprininae_a	ANCESTRAL SPECIES	440			ENSGT00940000154505.B.c	ENSGT00940000161528	ENSGT00730000111130.y.b	ENSGT00390000018525.b	ENSGT00940000165563.a	ENSGT00940000160300.k.b	ENSGT00940000162100	ENSGT00390000013727.d.b.e	ENSGT01000000214413.b.a.a.q.b.b	ENSGT00940000155931.b.b	ENSGT00950000183070.a.a.mb.b.g.a	ENSGT00940000159409	ENSGT00390000001143.t	ENSGT01030000234598.a.a.a.b.f #22	ENSGT00940000165248.c	ENSGT01100000263502.A.a.a.b.a.b.i	ENSGT00940000159828.b.b	ENSGT00940000154101.b.c.a.a	ENSGT00440000037780.b.a
Golden-line barbel	MODERN SPECIES	917				PROC (ENSSGRG00000035367)	DUSP28 (ENSSGRG00000035366)	sft2d3 (ENSSGRG00000035365)	WDR33 (ENSSGRG00000035359)	ENSSGRG00000035357	ENSSGRG00000035356	ENSSGRG00000034686	ENSSGRG00000034423	ENSSGRG00000034332	phb2a (ENSSGRG00000034011)	dlg1b (ENSSGRG00000029280)	ENSSGRG00000029174	tfr1a (ENSSGRG00000028915) #22
Common carp reference	MODERN SPECIES	29	ENSCCRG00000066558	ENSCCRG00000058169	ENSCCRG00000046430	ENSCCRG00000079071	ENSCCRG00000042930	sft2d3 (ENSCCRG00000081479)	ENSCCRG00000053690	ENSCCRG00000071011	ENSCCRG00000059578	ENSCCRG00000002227	ENSCCRG00000002245	phb2a (ENSCCRG00000025638)	ENSCCRG00000058281	dlg1b (ENSCCRG00000047219)	ENSCCRG00000056322	tfr1a (ENSCCRG00000032034) #22	ENSCCRG00000049631	ENSCCRG00000063231	ENSCCRG00000078987	ENSCCRG00000045659	ENSCCRG00000064339	adipoqb (ENSCCRG00000057353)	ENSCCRG00000037940	bambib (ENSCCRG00000071037)	ENSCCRG00000037933	mkxb (ENSCCRG00000041671)	ENSCCRG00000042504	yme1l1b (ENSCCRG00000037619)	ENSCCRG00000042487	mib1 (ENSCCRG00000061465)	gata6 (ENSCCRG00000064181)
Goldfish	MODERN SPECIES	19	ENSCARG00000025829	ENSCARG00000025823	DUSP28 (ENSCARG00000025806)	WDR33 (ENSCARG00000025722)	sft2d3 (ENSCARG00000025710)	ENSCARG00000025702	ENSCARG00000025698	ENSCARG00000025354	ENSCARG00000025327	ENSCARG00000025269	phb2a (ENSCARG00000025194)	ENSCARG00000025160	ENSCARG00000025149	ENSCARG00000019412	ENSCARG00000019266	tfr1a (ENSCARG00000019191) #22	ENSCARG00000019184	ENSCARG00000019144	ENSCARG00000019126	ENSCARG00000019123	socs6b (ENSCARG00000019120)	cbln2a (ENSCARG00000019106)	ENSCARG00000019079	atpsckmt (ENSCARG00000019067)	marchf6 (ENSCARG00000018988)	ENSCARG00000018970	ctnnd2b (ENSCARG00000018459)	ENSCARG00000018378	ENSCARG00000018355	si:dkey-94e7.2 (ENSCARG00000018341)	ENSCARG00000018335
Zebrafish	MODERN SPECIES	11	saga (ENSDARG00000012610)	proca (ENSDARG00000093079)	PROC (ENSDARG00000038258)	DUSP28 (ENSDARG00000059695)	wdr33 (ENSDARG00000018272)	sft2d3 (ENSDARG00000070284)	ENSDARG00000078598	ENSDARG00000055498	MFN1 (ENSDARG00000011884)	GNB4 (ENSDARG00000019278)	ENSDARG00000074403	phb2a (ENSDARG00000045297)	ptmab (ENSDARG00000101766)	dlg1b (ENSDARG00000102216)	ENSDARG00000104726	tfr1a (ENSDARG00000101322) #22	ENSDARG00000104409	ENSDARG00000103674	adipoqb (ENSDARG00000100086)	bambib (ENSDARG00000099677)	ENSDARG00000099015	cables1 (ENSDARG00000099395)	gata6 (ENSDARG00000103589)	mib1 (ENSDARG00000102184)	yme1l1b (ENSDARG00000104401)	rab18b (ENSDARG00000098344)	mkxb (ENSDARG00000114182)	ENSDARG00000025168	npc1 (ENSDARG00000017180)	egfra (ENSDARG00000013847)	MMP16 (ENSDARG00000058876)
Euteleosteomorpha	ANCESTRAL SPECIES	281															ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b
Acanthomorphata	ANCESTRAL SPECIES	230															ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000164279.a	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Tiger tail seahorse	MODERN SPECIES	269	ZBTB41 (ENSHCOG00000001875)	ENSHCOG00000001889	fggy (ENSHCOG00000001903)	DNM3 (ENSHCOG00000001922)	ENSHCOG00000001932	dab1b (ENSHCOG00000001971)	c8b (ENSHCOG00000001980)	C8A (ENSHCOG00000001996)	ENSHCOG00000002004	PLPP3 (ENSHCOG00000002012)	pgap6 (ENSHCOG00000002020)	rgs11 (ENSHCOG00000002036)	ints15 (ENSHCOG00000002046)	ENSHCOG00000002051	ints15 (ENSHCOG00000002056)	tfr1a (ENSHCOG00000002062) #22	ENSHCOG00000002068	ENSHCOG00000002110	ENSHCOG00000002142	ENSHCOG00000002153	ENSHCOG00000002175	mkxb (ENSHCOG00000002204)	rab18b (ENSHCOG00000002217)	yme1l1b (ENSHCOG00000002259)	abi1b (ENSHCOG00000002287)	ENSHCOG00000002295	ENSHCOG00000002303	anxa13l (ENSHCOG00000002310)	GPR158 (ENSHCOG00000002336)	DIS3L2 (ENSHCOG00000002371)	ENSHCOG00000002468
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Amphiprion	ANCESTRAL SPECIES	33	ENSGT00940000162061.a.b	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Clown anemonefish	MODERN SPECIES	566	PRDX6 (ENSAOCG00000024569)	PLPP6 (ENSAOCG00000024568)	ENSAOCG00000024565	MYOC (ENSAOCG00000024562)	ENSAOCG00000024559	ENSAOCG00000024543	ENSAOCG00000024535	dab1b (ENSAOCG00000024525)	c8b (ENSAOCG00000024509)	C8A (ENSAOCG00000024502)	PLPP3 (ENSAOCG00000024493)	ENSAOCG00000024488	pgap6 (ENSAOCG00000024482)	rgs11 (ENSAOCG00000024466)	ints15 (ENSAOCG00000024455)	tfr1a (ENSAOCG00000024448) #22	ppp2r1bb (ENSAOCG00000024440)	med29 (ENSAOCG00000001776)	mlf1 (ENSAOCG00000024420)	rsrc1 (ENSAOCG00000024414)
Orange clownfish	MODERN SPECIES	1	JUN (ENSAPEG00000000765)	fggy (ENSAPEG00000000709)	PRDX6 (ENSAPEG00000000647)	PLPP6 (ENSAPEG00000000599)	MYOC (ENSAPEG00000000587)	ENSAPEG00000000472	ENSAPEG00000000455	dab1b (ENSAPEG00000000396)	c8b (ENSAPEG00000000386)	C8A (ENSAPEG00000000375)	PLPP3 (ENSAPEG00000000323)	ENSAPEG00000023293	pgap6 (ENSAPEG00000023283)	rgs11 (ENSAPEG00000023246)	ints15 (ENSAPEG00000023225)	tfr1a (ENSAPEG00000023216) #22	ENSAPEG00000023155	ENSAPEG00000023091	ENSAPEG00000023080	ENSAPEG00000022990	mkxb (ENSAPEG00000022942)	rab18b (ENSAPEG00000022923)	PTCHD3 (ENSAPEG00000022908)	yme1l1b (ENSAPEG00000022866)	ENSAPEG00000022839	abi1b (ENSAPEG00000022801)	APBB1IP (ENSAPEG00000022785)	ENSAPEG00000022773	anxa13l (ENSAPEG00000022747)	GPR158 (ENSAPEG00000022691)	DIS3L2 (ENSAPEG00000022654)
Spiny chromis	MODERN SPECIES	159	fggy (ENSAPOG00000022585)	PRDX6 (ENSAPOG00000022611)	PLPP6 (ENSAPOG00000022624)	MYOC (ENSAPOG00000022632)	ENSAPOG00000022719	ENSAPOG00000022806	dab1b (ENSAPOG00000022848)	c8b (ENSAPOG00000022873)	C8A (ENSAPOG00000022890)	si:ch211-188c16.1 (ENSAPOG00000022936)	PLPP3 (ENSAPOG00000022971)	ENSAPOG00000022985	pgap6 (ENSAPOG00000023023)	rgs11 (ENSAPOG00000023101)	ints15 (ENSAPOG00000023159)	tfr1a (ENSAPOG00000023185) #22
Bicolor damselfish	MODERN SPECIES	236	PRDX6 (ENSSPAG00000005166)	PLPP6 (ENSSPAG00000005193)	MYOC (ENSSPAG00000005203)	ENSSPAG00000005213	ENSSPAG00000005225	ENSSPAG00000005316	dab1b (ENSSPAG00000005373)	c8b (ENSSPAG00000005410)	C8A (ENSSPAG00000005426)	si:ch211-188c16.1 (ENSSPAG00000005444)	PLPP3 (ENSSPAG00000005469)	ENSSPAG00000005493	pgap6 (ENSSPAG00000005502)	rgs11 (ENSSPAG00000005523)	ints15 (ENSSPAG00000005548)	tfr1a (ENSSPAG00000005560) #22	ENSSPAG00000005594
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000162061.a.b	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	733	PRDX6 (ENSACIG00000011439)	MYOC (ENSACIG00000011422)	PLPP6 (ENSACIG00000011409)	ENSACIG00000011352	SUCO (ENSACIG00000011322)	dab1b (ENSACIG00000011310)	c8b (ENSACIG00000011272)	C8A (ENSACIG00000011240)	si:ch211-188c16.1 (ENSACIG00000011217)	PLPP3 (ENSACIG00000011204)	ENSACIG00000011194	pgap6 (ENSACIG00000011173)	rgs11 (ENSACIG00000011134)	ints15 (ENSACIG00000011111)	ENSACIG00000011103	tfr1a (ENSACIG00000011065) #22	tfr1a (ENSACIG00000010981) #22	ENSACIG00000010959	xirp1 (ENSACIG00000010945)	CSRNP1 (ENSACIG00000010903)	gorasp1a (ENSACIG00000010870)	wdr48b (ENSACIG00000010825)	ENSACIG00000010815	scn12aa (ENSACIG00000010766)	ENSACIG00000010752	ENSACIG00000010739	COL6A1 (ENSACIG00000010609)	COL6A2 (ENSACIG00000010522)	zgc:162816 (ENSACIG00000010483)	ENSACIG00000010403	CFAP410 (ENSACIG00000010322)
Midas cichlid	MODERN SPECIES	733	MYOC (ENSACIG00000011422)	PLPP6 (ENSACIG00000011409)	ENSACIG00000011352	SUCO (ENSACIG00000011322)	dab1b (ENSACIG00000011310)	c8b (ENSACIG00000011272)	C8A (ENSACIG00000011240)	si:ch211-188c16.1 (ENSACIG00000011217)	PLPP3 (ENSACIG00000011204)	ENSACIG00000011194	pgap6 (ENSACIG00000011173)	rgs11 (ENSACIG00000011134)	ints15 (ENSACIG00000011111)	ENSACIG00000011103	tfr1a (ENSACIG00000011065) #22	tfr1a (ENSACIG00000010981) #22	ENSACIG00000010959	xirp1 (ENSACIG00000010945)	CSRNP1 (ENSACIG00000010903)	gorasp1a (ENSACIG00000010870)	wdr48b (ENSACIG00000010825)	ENSACIG00000010815	scn12aa (ENSACIG00000010766)	ENSACIG00000010752	ENSACIG00000010739	COL6A1 (ENSACIG00000010609)	COL6A2 (ENSACIG00000010522)	zgc:162816 (ENSACIG00000010483)	ENSACIG00000010403	CFAP410 (ENSACIG00000010322)	zgc:171772 (ENSACIG00000010196)
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000162061.a.b	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Lyretail cichlid	MODERN SPECIES	300	fggy (ENSNBRG00000007117)	ENSNBRG00000007155	PLPP6 (ENSNBRG00000007166)	MYOC (ENSNBRG00000007176)	ENSNBRG00000007199	ENSNBRG00000007263	dab1b (ENSNBRG00000007280)	c8b (ENSNBRG00000007314)	C8A (ENSNBRG00000007346)	PLPP3 (ENSNBRG00000007449)	PLPP3 (ENSNBRG00000007489)	pgap6 (ENSNBRG00000007527)	rgs11 (ENSNBRG00000007535)	ints15 (ENSNBRG00000007587)	ENSNBRG00000007629	tfr1a (ENSNBRG00000007653) #22	ENSNBRG00000007910	ENSNBRG00000007976	ENSNBRG00000008038	ENSNBRG00000008063	mkxb (ENSNBRG00000008113)	rab18b (ENSNBRG00000008137)	PTCHD3 (ENSNBRG00000008165)	yme1l1b (ENSNBRG00000008194)	abi1b (ENSNBRG00000008250)	ENSNBRG00000008334	anxa13l (ENSNBRG00000008462)	GPR158 (ENSNBRG00000008812)	DIS3L2 (ENSNBRG00000008893)	ENSNBRG00000008926	ENSNBRG00000008967
Haplochromini	ANCESTRAL SPECIES	2	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Burton s mouthbrooder	MODERN SPECIES	919																tfr1a (ENSHBUG00000011376) #22	ENSHBUG00000011244	ENSHBUG00000011093
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
P. nyererei	MODERN SPECIES	410	fggy (ENSPNYG00000000940)	PRDX6 (ENSPNYG00000000994)	PLPP6 (ENSPNYG00000001027)	MYOC (ENSPNYG00000001044)	ENSPNYG00000001077	ENSPNYG00000001145	ENSPNYG00000001170	dab1b (ENSPNYG00000001199)	c8b (ENSPNYG00000001241)	C8A (ENSPNYG00000001284)	si:ch211-188c16.1 (ENSPNYG00000001290)	PLPP3 (ENSPNYG00000001322)	pgap6 (ENSPNYG00000001348)	rgs11 (ENSPNYG00000001350)	ints15 (ENSPNYG00000001384)	tfr1a (ENSPNYG00000001416) #22	ENSPNYG00000001448	ENSPNYG00000001460	ENSPNYG00000001532	ENSPNYG00000001626	ENSPNYG00000001641	mkxb (ENSPNYG00000001701)	rab18b (ENSPNYG00000001751)	PTCHD3 (ENSPNYG00000001779)	yme1l1b (ENSPNYG00000001820)	ENSPNYG00000001925	abi1b (ENSPNYG00000001951)	ENSPNYG00000001983	ENSPNYG00000002024	anxa13l (ENSPNYG00000002053)	GPR158 (ENSPNYG00000002113)
Haplochromini_B	DUPLICATION
Haplochromini_B	DUPLICATION
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b.i.a #22	ENSGT01030000234598.a.a.a.b.i.b #22	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b.j #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677
Eastern happy	MODERN SPECIES	9	PRDX6 (ENSACLG00000014089)	PLPP6 (ENSACLG00000014150)	MYOC (ENSACLG00000014168)	DNM3 (ENSACLG00000014181)	ENSACLG00000014329	ENSACLG00000014413	dab1b (ENSACLG00000014425)	c8b (ENSACLG00000014457)	C8A (ENSACLG00000014491)	ENSACLG00000014504	PLPP3 (ENSACLG00000014558)	ENSACLG00000014574	pgap6 (ENSACLG00000014599)	rgs11 (ENSACLG00000014632)	ints15 (ENSACLG00000014733)	tfr1a (ENSACLG00000014745) #22	tfr1a (ENSACLG00000014797) #22	ENSACLG00000014838	ENSACLG00000014853	ENSACLG00000015154	ENSACLG00000015168	ENSACLG00000015199	mkxb (ENSACLG00000015273)	rab18b (ENSACLG00000015289)	PTCHD3 (ENSACLG00000015333)	yme1l1b (ENSACLG00000015364)	ENSACLG00000015502	abi1b (ENSACLG00000015588)	ENSACLG00000015641	ENSACLG00000015724	anxa13l (ENSACLG00000015746)
Zebra mbuna	MODERN SPECIES	1100	fggy (ENSMZEG00005009131)	PLPP6 (ENSMZEG00005009110)	PRDX6 (ENSMZEG00005009097)	MYOC (ENSMZEG00005009084)	ENSMZEG00005008968	ENSMZEG00005008932	dab1b (ENSMZEG00005008868)	c8b (ENSMZEG00005008837)	C8A (ENSMZEG00005008826)	si:ch211-188c16.1 (ENSMZEG00005008810)	PLPP3 (ENSMZEG00005008790)	ENSMZEG00005008776	pgap6 (ENSMZEG00005008765)	rgs11 (ENSMZEG00005008746)	ints15 (ENSMZEG00005008732)	tfr1a (ENSMZEG00005008704) #22	tfr1a (ENSMZEG00005008672) #22	tfr1a (ENSMZEG00005008562) #22	ENSMZEG00005008486	ENSMZEG00005008381	ENSMZEG00005008368	ENSMZEG00005008287	mkxb (ENSMZEG00005008265)	rab18b (ENSMZEG00005008244)	ENSMZEG00005008217	yme1l1b (ENSMZEG00005008162)	ENSMZEG00005008147	abi1b (ENSMZEG00005008131)	ENSMZEG00005008117	ro60 (ENSMZEG00005008107)	ENSMZEG00005008099
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b.i.a #22	ENSGT01030000234598.a.a.a.b.i.b #22	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b.j #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991
Zebra mbuna	MODERN SPECIES	1100	PLPP6 (ENSMZEG00005009110)	PRDX6 (ENSMZEG00005009097)	MYOC (ENSMZEG00005009084)	ENSMZEG00005008968	ENSMZEG00005008932	dab1b (ENSMZEG00005008868)	c8b (ENSMZEG00005008837)	C8A (ENSMZEG00005008826)	si:ch211-188c16.1 (ENSMZEG00005008810)	PLPP3 (ENSMZEG00005008790)	ENSMZEG00005008776	pgap6 (ENSMZEG00005008765)	rgs11 (ENSMZEG00005008746)	ints15 (ENSMZEG00005008732)	tfr1a (ENSMZEG00005008704) #22	tfr1a (ENSMZEG00005008672) #22	tfr1a (ENSMZEG00005008562) #22	ENSMZEG00005008486	ENSMZEG00005008381	ENSMZEG00005008368	ENSMZEG00005008287	mkxb (ENSMZEG00005008265)	rab18b (ENSMZEG00005008244)	ENSMZEG00005008217	yme1l1b (ENSMZEG00005008162)	ENSMZEG00005008147	abi1b (ENSMZEG00005008131)	ENSMZEG00005008117	ro60 (ENSMZEG00005008107)	ENSMZEG00005008099	cdc73 (ENSMZEG00005007529)
Eastern happy	MODERN SPECIES	9	PLPP6 (ENSACLG00000014150)	MYOC (ENSACLG00000014168)	DNM3 (ENSACLG00000014181)	ENSACLG00000014329	ENSACLG00000014413	dab1b (ENSACLG00000014425)	c8b (ENSACLG00000014457)	C8A (ENSACLG00000014491)	ENSACLG00000014504	PLPP3 (ENSACLG00000014558)	ENSACLG00000014574	pgap6 (ENSACLG00000014599)	rgs11 (ENSACLG00000014632)	ints15 (ENSACLG00000014733)	tfr1a (ENSACLG00000014745) #22	tfr1a (ENSACLG00000014797) #22	ENSACLG00000014838	ENSACLG00000014853	ENSACLG00000015154	ENSACLG00000015168	ENSACLG00000015199	mkxb (ENSACLG00000015273)	rab18b (ENSACLG00000015289)	PTCHD3 (ENSACLG00000015333)	yme1l1b (ENSACLG00000015364)	ENSACLG00000015502	abi1b (ENSACLG00000015588)	ENSACLG00000015641	ENSACLG00000015724	anxa13l (ENSACLG00000015746)	GPR158 (ENSACLG00000015812)
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b.i.a #22	ENSGT01030000234598.a.a.a.b.i.b #22	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b.j #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Zebra mbuna	MODERN SPECIES	1100	PRDX6 (ENSMZEG00005009097)	MYOC (ENSMZEG00005009084)	ENSMZEG00005008968	ENSMZEG00005008932	dab1b (ENSMZEG00005008868)	c8b (ENSMZEG00005008837)	C8A (ENSMZEG00005008826)	si:ch211-188c16.1 (ENSMZEG00005008810)	PLPP3 (ENSMZEG00005008790)	ENSMZEG00005008776	pgap6 (ENSMZEG00005008765)	rgs11 (ENSMZEG00005008746)	ints15 (ENSMZEG00005008732)	tfr1a (ENSMZEG00005008704) #22	tfr1a (ENSMZEG00005008672) #22	tfr1a (ENSMZEG00005008562) #22	ENSMZEG00005008486	ENSMZEG00005008381	ENSMZEG00005008368	ENSMZEG00005008287	mkxb (ENSMZEG00005008265)	rab18b (ENSMZEG00005008244)	ENSMZEG00005008217	yme1l1b (ENSMZEG00005008162)	ENSMZEG00005008147	abi1b (ENSMZEG00005008131)	ENSMZEG00005008117	ro60 (ENSMZEG00005008107)	ENSMZEG00005008099	cdc73 (ENSMZEG00005007529)	ENSMZEG00005007482
Nile tilapia	MODERN SPECIES	9	ENSONIG00000041334	PRDX6 (ENSONIG00000037608)	PLPP6 (ENSONIG00000018646)	MYOC (ENSONIG00000033170)	ENSONIG00000018649	ENSONIG00000018650	dab1b (ENSONIG00000018651)	c8b (ENSONIG00000018652)	C8A (ENSONIG00000018653)	si:ch211-188c16.1 (ENSONIG00000018654)	PLPP3 (ENSONIG00000018656)	ENSONIG00000041681	pgap6 (ENSONIG00000018659)	rgs11 (ENSONIG00000018661)	ints15 (ENSONIG00000018663)	tfr1a (ENSONIG00000038316) #22	ENSONIG00000018667	ENSONIG00000041221	ENSONIG00000018670	ENSONIG00000018671	mkxb (ENSONIG00000018672)	rab18b (ENSONIG00000034920)	ENSONIG00000018674	ENSONIG00000039132	yme1l1b (ENSONIG00000018675)	ENSONIG00000034134	ENSONIG00000027874	abi1b (ENSONIG00000018677)	ENSONIG00000018678	anxa13l (ENSONIG00000042579)	GPR158 (ENSONIG00000018680)
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.a.b
Poecilia	ANCESTRAL SPECIES	19	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT00940000177628	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.a.b
NAME_6	ANCESTRAL SPECIES	50	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o
Amazon molly	MODERN SPECIES	318	ENSPFOG00000010852	PLPP6 (ENSPFOG00000010886)	MYOC (ENSPFOG00000010892)	ENSPFOG00000010907	ENSPFOG00000011154	dab1b (ENSPFOG00000011361)	c8b (ENSPFOG00000011488)	C8A (ENSPFOG00000011892)	ENSPFOG00000022407	PLPP3 (ENSPFOG00000012245)	ENSPFOG00000012297	pgap6 (ENSPFOG00000012309)	rgs11 (ENSPFOG00000012458)	ints15 (ENSPFOG00000012742)	rgs11 (ENSPFOG00000022336)	tfr1a (ENSPFOG00000012777) #22	ENSPFOG00000012933	ENSPFOG00000013166	ENSPFOG00000013185	ENSPFOG00000013260	mkxb (ENSPFOG00000013469)	rab18b (ENSPFOG00000013491)	yme1l1b (ENSPFOG00000013526)
Sailfin molly	MODERN SPECIES	947														rgs11 (ENSPLAG00000015136)	ints15 (ENSPLAG00000015118)	tfr1a (ENSPLAG00000015109) #22	ENSPLAG00000015092	ENSPLAG00000000678
Guppy	MODERN SPECIES	447	fggy (ENSPREG00000004032)	PRDX6 (ENSPREG00000004007)	PLPP6 (ENSPREG00000003991)	MYOC (ENSPREG00000003984)	ENSPREG00000003906	ENSPREG00000003804	dab1b (ENSPREG00000003739)	c8b (ENSPREG00000003692)	C8A (ENSPREG00000003667)	ENSPREG00000003642	PLPP3 (ENSPREG00000003629)	pgap6 (ENSPREG00000003576)	rgs11 (ENSPREG00000003321)	ints15 (ENSPREG00000003265)	ENSPREG00000003242	tfr1a (ENSPREG00000003233) #22	ENSPREG00000003206	ENSPREG00000003105	ENSPREG00000003036	ENSPREG00000003023	ENSPREG00000002962	mkxb (ENSPREG00000002922)	rab18b (ENSPREG00000002901)	rab18b (ENSPREG00000002887)	yme1l1b (ENSPREG00000002768)	ENSPREG00000002699	ENSPREG00000002676	ENSPREG00000002655	APBB1IP (ENSPREG00000002630)	ENSPREG00000002613	anxa13l (ENSPREG00000002567)
Platyfish	MODERN SPECIES	20	fggy (ENSXMAG00000018286)	ENSXMAG00000018279	PLPP6 (ENSXMAG00000018278)	MYOC (ENSXMAG00000028903)	DNM3 (ENSXMAG00000018256)	ENSXMAG00000018248	dab1b (ENSXMAG00000027199)	c8b (ENSXMAG00000018193)	C8A (ENSXMAG00000018166)	si:ch211-188c16.1 (ENSXMAG00000021786)	PLPP3 (ENSXMAG00000018151)	ENSXMAG00000002731	pgap6 (ENSXMAG00000028125)	rgs11 (ENSXMAG00000011058)	ints15 (ENSXMAG00000011052)	tfr1a (ENSXMAG00000011028) #22	ENSXMAG00000017201	ENSXMAG00000021176	ENSXMAG00000017233	ENSXMAG00000007015	ENSXMAG00000006979	mkxb (ENSXMAG00000006967)	rab18b (ENSXMAG00000006945)	yme1l1b (ENSXMAG00000006901)	ENSXMAG00000022010	abi1b (ENSXMAG00000006866)	ENSXMAG00000006861	ENSXMAG00000024642	anxa13l (ENSXMAG00000011743)	GPR158 (ENSXMAG00000011728)	DIS3L2 (ENSXMAG00000011688)
NAME_4	ANCESTRAL SPECIES	35	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B.f	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b.d
Sheepshead minnow	MODERN SPECIES	191	JUN (ENSCVAG00000013713)	fggy (ENSCVAG00000013768)	ENSCVAG00000013786	PLPP6 (ENSCVAG00000013793)	MYOC (ENSCVAG00000013795)	ENSCVAG00000013879	ENSCVAG00000013915	dab1b (ENSCVAG00000013966)	c8b (ENSCVAG00000013985)	C8A (ENSCVAG00000013995)	PLPP3 (ENSCVAG00000000826)	ENSCVAG00000014018	pgap6 (ENSCVAG00000014033)	rgs11 (ENSCVAG00000014086)	ints15 (ENSCVAG00000014101)	tfr1a (ENSCVAG00000014116) #22	ENSCVAG00000014268	ENSCVAG00000014303
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00940000175752	ENSGT00940000156450.d	ENSGT01030000238599	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Turquoise killifish	MODERN SPECIES	1618	Nfu_g_1_020056 (ENSNFUG00015010184)	ENSNFUG00015010171	dlgap1a (ENSNFUG00015010164)	cahz (ENSNFUG00015010138)	EXOC3 (ENSNFUG00015010083)	KCNB2 (ENSNFUG00015010073)	CABZ01085085.1 (ENSNFUG00015010043)	XKR4 (ENSNFUG00015010031)	tmem68 (ENSNFUG00015010009)	ENSNFUG00015009987	ccr12a (ENSNFUG00015009979)	ENSNFUG00015009688	BLVRA (ENSNFUG00015009615)	ints15 (ENSNFUG00015009604)	ENSNFUG00015009596	TFR1A (ENSNFUG00015008669) #22	ENSNFUG00015008595	ENSNFUG00015008578	gjb7 (ENSNFUG00015008569)	ST6GAL1 (ENSNFUG00015008557)	NCF1 (ENSNFUG00015008534)	ENSNFUG00015008509	ENSNFUG00015008494	WACB (ENSNFUG00015008489)	ENSNFUG00015008484	mkxb (ENSNFUG00015008480)	RAB18B (ENSNFUG00015008467)	YME1L1B (ENSNFUG00015008037)	ENSNFUG00015007990	ABI1B (ENSNFUG00015007815)	ENSNFUG00015007790
Oryzias	ANCESTRAL SPECIES	12	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.b
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.b
Japanese Medaka HdrR	MODERN SPECIES	8	ENSORLG00000010012	fggy (ENSORLG00000010087)	ENSORLG00000025605	MYOC (ENSORLG00000022277)	ENSORLG00000009977	ENSORLG00000009886	dab1b (ENSORLG00000009863)	c8b (ENSORLG00000009829)	C8A (ENSORLG00000009804)	si:ch211-188c16.1 (ENSORLG00000024763)	PLPP3 (ENSORLG00000009775)	ENSORLG00000009750	pgap6 (ENSORLG00000009746)	rgs11 (ENSORLG00000009733)	ints15 (ENSORLG00000009710)	tfr1a (ENSORLG00000009702) #22	ENSORLG00000023375	ENSORLG00000009687	ENSORLG00000024476	ENSORLG00000025079	ENSORLG00000009667	ENSORLG00000009644	mkxb (ENSORLG00000009614)	rab18b (ENSORLG00000009609)	yme1l1b (ENSORLG00000009591)	ENSORLG00000009551	abi1b (ENSORLG00000009513)	ENSORLG00000022709	ENSORLG00000009404	anxa13l (ENSORLG00000009392)	ENSORLG00000009379
Chinese medaka	MODERN SPECIES	192																tfr1a (ENSOSIG00000015870) #22
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.b
Indian medaka	MODERN SPECIES	10	fggy (ENSOMEG00000008796)	ENSOMEG00000008671	PLPP6 (ENSOMEG00000000743)	MYOC (ENSOMEG00000008626)	DNM3 (ENSOMEG00000008594)	ENSOMEG00000008499	dab1b (ENSOMEG00000008416)	c8b (ENSOMEG00000008383)	C8A (ENSOMEG00000008358)	si:ch211-188c16.1 (ENSOMEG00000008318)	PLPP3 (ENSOMEG00000008275)	ENSOMEG00000008248	pgap6 (ENSOMEG00000008228)	rgs11 (ENSOMEG00000000794)	ints15 (ENSOMEG00000008017)	tfr1a (ENSOMEG00000007992) #22	ENSOMEG00000007936	ENSOMEG00000007767	ENSOMEG00000007750	ENSOMEG00000007703	mkxb (ENSOMEG00000007576)	rab18b (ENSOMEG00000007546)	yme1l1b (ENSOMEG00000007513)	ENSOMEG00000007474	abi1b (ENSOMEG00000007440)	ENSOMEG00000007361	ENSOMEG00000007337	anxa13l (ENSOMEG00000007316)	GPR158 (ENSOMEG00000007292)	DIS3L2 (ENSOMEG00000007257)	ENSOMEG00000007217
Javanese ricefish	MODERN SPECIES	8	ENSOJAG00000003924	PLPP6 (ENSOJAG00000003913)	MYOC (ENSOJAG00000003902)	ENSOJAG00000003867	DNM3 (ENSOJAG00000003736)	ENSOJAG00000003615	dab1b (ENSOJAG00000003566)	c8b (ENSOJAG00000003498)	C8A (ENSOJAG00000003390)	si:ch211-188c16.1 (ENSOJAG00000003350)	PLPP3 (ENSOJAG00000003333)	ENSOJAG00000003324	pgap6 (ENSOJAG00000003292)	ints15 (ENSOJAG00000003280)	rgs11 (ENSOJAG00000002496)	tfr1a (ENSOJAG00000002067) #22	ENSOJAG00000001970	ENSOJAG00000018382	ENSOJAG00000018369	ENSOJAG00000018355	ENSOJAG00000018134	mkxb (ENSOJAG00000018115)	rab18b (ENSOJAG00000018077)	yme1l1b (ENSOJAG00000017720)	ENSOJAG00000017688	abi1b (ENSOJAG00000017509)	ENSOJAG00000017444	anxa13l (ENSOJAG00000017385)	GPR158 (ENSOJAG00000017327)	dis3l2 (ENSOJAG00000016094)	tlk1b (ENSOJAG00000015185)
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Eupercaria	ANCESTRAL SPECIES	22	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000169365	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Fugu	MODERN SPECIES	14	JUN (ENSTRUG00000022103)	fggy (ENSTRUG00000008696)	PRDX6 (ENSTRUG00000026630)	PLPP6 (ENSTRUG00000008550)	MYOC (ENSTRUG00000022578)	ENSTRUG00000007216	ENSTRUG00000007127	dab1b (ENSTRUG00000028473)	c8b (ENSTRUG00000006173)	si:ch211-188c16.1 (ENSTRUG00000020979)	PLPP3 (ENSTRUG00000005209)	ENSTRUG00000027844	pgap6 (ENSTRUG00000004905)	rgs11 (ENSTRUG00000003932)	ints15 (ENSTRUG00000003705)	tfr1a (ENSTRUG00000002063) #22	ENSTRUG00000001594	ENSTRUG00000022898	ENSTRUG00000002735	ENSTRUG00000031688	mkxb (ENSTRUG00000026882)	rab18b (ENSTRUG00000004283)	ENSTRUG00000004544	yme1l1b (ENSTRUG00000004667)	ENSTRUG00000005139	abi1b (ENSTRUG00000005181)	anxa13l (ENSTRUG00000025644)	GPR158 (ENSTRUG00000006165)	DIS3L2 (ENSTRUG00000006319)	tlk1b (ENSTRUG00000007408)	gorasp2 (ENSTRUG00000007936)
Tetraodon	MODERN SPECIES	6	angptl1b (ENSTNIG00000007861)	TADA1 (ENSTNIG00000007862)	fggy (ENSTNIG00000007863)	PRDX6 (ENSTNIG00000007864)	PLPP6 (ENSTNIG00000007865)	MYOC (ENSTNIG00000007866)	ENSTNIG00000007867	ENSTNIG00000007868	dab1b (ENSTNIG00000007869)	c8b (ENSTNIG00000007870)	c8a (ENSTNIG00000007871)	PLPP3 (ENSTNIG00000007872)	pgap6 (ENSTNIG00000007873)	rgs11 (ENSTNIG00000007874)	ints15 (ENSTNIG00000007875)	tfr1a (ENSTNIG00000007876) #22	ENSTNIG00000007877	ENSTNIG00000007878	ENSTNIG00000007879	ENSTNIG00000007880	mkxb (ENSTNIG00000007881)	rab18b (ENSTNIG00000007882)	PTCHD3 (ENSTNIG00000007883)	yme1l1b (ENSTNIG00000007884)	ENSTNIG00000007885	abi1b (ENSTNIG00000007886)	ENSTNIG00000007887	ENSTNIG00000007888	anxa13l (ENSTNIG00000007889)	ENSTNIG00000007890	DIS3L2 (ENSTNIG00000007891)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1276															ints15 (ENSLBEG00000021615)	tfr1a (ENSLBEG00000021423) #22
Ballan wrasse	MODERN SPECIES	3698															ENSLBEG00000012100 #22	tfr1a (ENSLBEG00000011936) #22
Ballan wrasse	MODERN SPECIES	437																tfr1a (ENSLBEG00000019754) #22	ENSLBEG00000019655	ENSLBEG00000019597	ENSLBEG00000019583	ENSLBEG00000019495	mkxb (ENSLBEG00000019468)	rab18b (ENSLBEG00000019428)	PTCHD3 (ENSLBEG00000019397)	yme1l1b (ENSLBEG00000019316)
Ballan wrasse	MODERN SPECIES	3698																ENSLBEG00000012100 #22	tfr1a (ENSLBEG00000011936) #22
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00550000074794	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b
Perciformes	ANCESTRAL SPECIES	5	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000162061.a.b	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Lumpfish	MODERN SPECIES	8	JUN (ENSCLMG00005008748)	fggy (ENSCLMG00005008505)	PRDX6 (ENSCLMG00005008499)	MYOC (ENSCLMG00005008498)	ENSCLMG00005008352	ENSCLMG00005008329	dab1b (ENSCLMG00005008327)	c8b (ENSCLMG00005008323)	C8A (ENSCLMG00005008321)	si:ch211-188c16.1 (ENSCLMG00005008320)	PLPP3 (ENSCLMG00005008319)	ENSCLMG00005008318	pgap6 (ENSCLMG00005008317)	rgs11 (ENSCLMG00005007847)	ints15 (ENSCLMG00005007839)	tfr1a (ENSCLMG00005007754) #22	ENSCLMG00005007751	ENSCLMG00005007747	ENSCLMG00005007745	ENSCLMG00005007694	mkxb (ENSCLMG00005007692)	rab18b (ENSCLMG00005007680)	PTCHD3 (ENSCLMG00005007676)	yme1l1b (ENSCLMG00005003674)	ENSCLMG00005003641	abi1b (ENSCLMG00005003633)	APBB1IP (ENSCLMG00005003632)	anxa13l (ENSCLMG00005003383)	GPR158 (ENSCLMG00005003363)	DIS3L2 (ENSCLMG00005002427)	ENSCLMG00005002424
Stickleback	MODERN SPECIES	2	TADA1 (ENSGACG00000016268)	JUN (ENSGACG00000016273)	fggy (ENSGACG00000016276)	PRDX6 (ENSGACG00000016284)	MYOC (ENSGACG00000016286)	DNM3 (ENSGACG00000016290)	SUCO (ENSGACG00000016309)	dab1b (ENSGACG00000016314)	c8b (ENSGACG00000016323)	C8A (ENSGACG00000016338)	PLPP3 (ENSGACG00000016343)	ENSGACG00000016346	pgap6 (ENSGACG00000016348)	rgs11 (ENSGACG00000016354)	ints15 (ENSGACG00000016371)	tfr1a (ENSGACG00000016373) #22	ENSGACG00000016384	ENSGACG00000016391	ENSGACG00000016392	ENSGACG00000016393	rab18b (ENSGACG00000016395)	yme1l1b (ENSGACG00000016397)	ENSGACG00000016401	abi1b (ENSGACG00000016406)	ENSGACG00000016414	ENSGACG00000016416	anxa13l (ENSGACG00000016417)	ENSGACG00000016433	GPR158 (ENSGACG00000016434)	DIS3L2 (ENSGACG00000016435)	ENSGACG00000016439
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00950000182984.b.a.b.f
Channel bull blenny	MODERN SPECIES	8	fggy (ENSCGOG00000015180)	ENSCGOG00000015170	ENSCGOG00000015169	MYOC (ENSCGOG00000015168)	ENSCGOG00000010723	ENSCGOG00000010618	dab1b (ENSCGOG00000010597)	c8b (ENSCGOG00000010587)	C8A (ENSCGOG00000010584)	si:ch211-188c16.1 (ENSCGOG00000010578)	PLPP3 (ENSCGOG00000010479)	ENSCGOG00000010475	pgap6 (ENSCGOG00000010465)	rgs11 (ENSCGOG00000010354)	ints15 (ENSCGOG00000010349)	tfr1a (ENSCGOG00000010323) #22	ENSCGOG00000010307	ENSCGOG00000010299	ENSCGOG00000010293	ENSCGOG00000010261	mkxb (ENSCGOG00000018831)	rab18b (ENSCGOG00000018820)	ENSCGOG00000018818	yme1l1b (ENSCGOG00000018448)	ENSCGOG00000018427	ENSCGOG00000018424	abi1b (ENSCGOG00000017896)	ENSCGOG00000017865	anxa13l (ENSCGOG00000017810)	GPR158 (ENSCGOG00000017775)	DIS3L2 (ENSCGOG00000017388)
Pike perch	MODERN SPECIES	12	TADA1 (ENSSLUG00000023270)	fggy (ENSSLUG00000023179)	ENSSLUG00000023159	PLPP6 (ENSSLUG00000023156)	MYOC (ENSSLUG00000023152)	ENSSLUG00000022964	ENSSLUG00000022899	ENSSLUG00000022892	c8b (ENSSLUG00000022812)	C8A (ENSSLUG00000022793)	si:ch211-188c16.1 (ENSSLUG00000022789)	PLPP3 (ENSSLUG00000022785)	pgap6 (ENSSLUG00000022766)	rgs11 (ENSSLUG00000022710)	ints15 (ENSSLUG00000022680)	tfr1a (ENSSLUG00000022562) #22	ENSSLUG00000022508	ENSSLUG00000022494	ENSSLUG00000022485
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT01000000214434.F	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Gilthead seabream	MODERN SPECIES	13	JUN (ENSSAUG00010014318)	PRDX6 (ENSSAUG00010014321)	PLPP6 (ENSSAUG00010014323)	MYOC (ENSSAUG00010014326)	ENSSAUG00010014338	ENSSAUG00010014544	dab1b (ENSSAUG00010014550)	c8b (ENSSAUG00010014553)	C8A (ENSSAUG00010014593)	si:ch211-188c16.1 (ENSSAUG00010014597)	PLPP3 (ENSSAUG00010014603)	ENSSAUG00010014610	pgap6 (ENSSAUG00010014619)	RGS11 (ENSSAUG00010006412)	ints15 (ENSSAUG00010006433)	tfr1a (ENSSAUG00010006443) #22	ENSSAUG00010006922	ENSSAUG00010006935	ENSSAUG00010006943	ENSSAUG00010006948	ENSSAUG00010006953	ENSSAUG00010006955	ENSSAUG00010007002	mkxb (ENSSAUG00010008367)	rab18b (ENSSAUG00010008371)	PTCHD3 (ENSSAUG00010008387)	yme1l1b (ENSSAUG00010008423)	ENSSAUG00010009997	ENSSAUG00010010000	abi1b (ENSSAUG00010010012)	ENSSAUG00010010606
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000164279.a	ENSGT00550000074794	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000177628	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
European seabass	DUPLICATION
European seabass	MODERN SPECIES		ENSDLAG00005030891	ENSDLAG00005030998	ENSDLAG00005013507	ENSDLAG00005013478	ENSDLAG00005033511	ENSDLAG00005013460	ENSDLAG00005009996	ENSDLAG00005009898	C8B (ENSDLAG00005009624)	ENSDLAG00005009602	ENSDLAG00005027142	ENSDLAG00005027160	ENSDLAG00005008642	ENSDLAG00005029963	ENSDLAG00005021781	tfr1a (ENSDLAG00005034612) #22	tfr1a (ENSDLAG00005033065) #22	ENSDLAG00005008531	ENSDLAG00005008497	ENSDLAG00005008485	ENSDLAG00005007524	mkxb (ENSDLAG00005007499)	rab18b (ENSDLAG00005007397)	ENSDLAG00005007378	yme1l1b (ENSDLAG00005005743)	ENSDLAG00005005651	ENSDLAG00005005492	ENSDLAG00005005439	anxa13l (ENSDLAG00005005387)	ENSDLAG00005005333	ENSDLAG00005003213
European seabass	MODERN SPECIES		ENSDLAG00005030998	ENSDLAG00005013507	ENSDLAG00005013478	ENSDLAG00005033511	ENSDLAG00005013460	ENSDLAG00005009996	ENSDLAG00005009898	C8B (ENSDLAG00005009624)	ENSDLAG00005009602	ENSDLAG00005027142	ENSDLAG00005027160	ENSDLAG00005008642	ENSDLAG00005029963	ENSDLAG00005021781	tfr1a (ENSDLAG00005034612) #22	tfr1a (ENSDLAG00005033065) #22	ENSDLAG00005008531	ENSDLAG00005008497	ENSDLAG00005008485	ENSDLAG00005007524	mkxb (ENSDLAG00005007499)	rab18b (ENSDLAG00005007397)	ENSDLAG00005007378	yme1l1b (ENSDLAG00005005743)	ENSDLAG00005005651	ENSDLAG00005005492	ENSDLAG00005005439	anxa13l (ENSDLAG00005005387)	ENSDLAG00005005333	ENSDLAG00005003213	ENSDLAG00005001376
Large yellow croaker	MODERN SPECIES	483	fggy (ENSLCRG00005006493)	PRDX6 (ENSLCRG00005006582)	PLPP6 (ENSLCRG00005006584)	MYOC (ENSLCRG00005006587)	DNM3 (ENSLCRG00005006592)	ENSLCRG00005006876	dab1b (ENSLCRG00005006877)	c8b (ENSLCRG00005006879)	C8A (ENSLCRG00005006888)	si:ch211-188c16.1 (ENSLCRG00005006904)	PLPP3 (ENSLCRG00005006905)	ENSLCRG00005006907	pgap6 (ENSLCRG00005006909)	rgs11 (ENSLCRG00005006914)	ints15 (ENSLCRG00005007459)	tfr1a (ENSLCRG00005007461) #22	ENSLCRG00005007472	ENSLCRG00005007483	ENSLCRG00005007486	ENSLCRG00005007492	ENSLCRG00005008407	rab18b (ENSLCRG00005008411)	prmt1 (ENSLCRG00005008428)	AP2A1 (ENSLCRG00005009075)	ENSLCRG00005009189	rras (ENSLCRG00005009191)	prrg2 (ENSLCRG00005009199)	PRR12 (ENSLCRG00005009202)	jpt2 (ENSLCRG00005009205)	ENSLCRG00005009207	ENSLCRG00005009218
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Anabantaria	ANCESTRAL SPECIES	8	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.a.b
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.a.b
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	8	cyp7a1 (ENSBSLG00000007740)	TMEM70 (ENSBSLG00000007675)	ENSBSLG00000007672	bpnt2 (ENSBSLG00000007667)	DARS2 (ENSBSLG00000007032)	cryz (ENSBSLG00000006791)	cryz (ENSBSLG00000006699)	tox (ENSBSLG00000006637)	ca8 (ENSBSLG00000006568)	rab2a (ENSBSLG00000006404)	CHD7 (ENSBSLG00000006021)	ptbp2b (ENSBSLG00000005965)	pgap6 (ENSBSLG00000005953)	rgs11 (ENSBSLG00000005358)	ints15 (ENSBSLG00000005208)	ENSBSLG00000005133 #22	ENSBSLG00000004889 #22
Siamese fighting fish	MODERN SPECIES	8	TMEM70 (ENSBSLG00000007675)	ENSBSLG00000007672	bpnt2 (ENSBSLG00000007667)	DARS2 (ENSBSLG00000007032)	cryz (ENSBSLG00000006791)	cryz (ENSBSLG00000006699)	tox (ENSBSLG00000006637)	ca8 (ENSBSLG00000006568)	rab2a (ENSBSLG00000006404)	CHD7 (ENSBSLG00000006021)	ptbp2b (ENSBSLG00000005965)	pgap6 (ENSBSLG00000005953)	rgs11 (ENSBSLG00000005358)	ints15 (ENSBSLG00000005208)	ENSBSLG00000005133 #22	ENSBSLG00000004889 #22
Climbing perch	MODERN SPECIES	8	ENSATEG00000025259	ENSATEG00000001848	ENSATEG00000001936	ENSATEG00000001965	ENSATEG00000001978	ENSATEG00000001989	ENSATEG00000002069	ENSATEG00000025723	C8B (ENSATEG00000002121)	C8A (ENSATEG00000002349)	si:ch211-188c16.1 (ENSATEG00000002464)	PLPP3 (ENSATEG00000002505)	pgap6 (ENSATEG00000002542)	ENSATEG00000002554	ints15 (ENSATEG00000002629)	tfr1a (ENSATEG00000002640) #22	ENSATEG00000002652	ENSATEG00000002751	ENSATEG00000002775	ENSATEG00000002790	mkxb (ENSATEG00000002942)	rab18b (ENSATEG00000002952)	ENSATEG00000003005	yme1l1b (ENSATEG00000003050)	ENSATEG00000003061	ENSATEG00000003087	ENSATEG00000003149	anxa13l (ENSATEG00000003180)	ENSATEG00000003260	ENSATEG00000003336	ENSATEG00000003515
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000019279	ENSMAMG00000019261	ENSMAMG00000019207	ENSMAMG00000019192	ENSMAMG00000019188	ENSMAMG00000019176	ENSMAMG00000019125	ENSMAMG00000019092	C8B (ENSMAMG00000019033)	C8A (ENSMAMG00000018942)	ENSMAMG00000018928	PLPP3 (ENSMAMG00000018894)	pgap6 (ENSMAMG00000018886)	ENSMAMG00000018848	ints15 (ENSMAMG00000018816)	tfr1a (ENSMAMG00000018663) #22	ENSMAMG00000018614	ENSMAMG00000018594	ENSMAMG00000018582	ENSMAMG00000018503	mkxb (ENSMAMG00000018467)	rab18b (ENSMAMG00000026952)	ENSMAMG00000018429	yme1l1b (ENSMAMG00000018379)	ENSMAMG00000018366	ENSMAMG00000018332	ENSMAMG00000018312	anxa13l (ENSMAMG00000018264)	ENSMAMG00000018207	ENSMAMG00000018174	ENSMAMG00000017920
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT01000000214434.F.l	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000155764.B	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370.n	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A	ENSGT00940000157247.a.b
Tongue sole	MODERN SPECIES	12	fggy (ENSCSEG00000018217)	PLPP6 (ENSCSEG00000018238)	MYOC (ENSCSEG00000018249)	dnm3a (ENSCSEG00000018281)	ENSCSEG00000018296	ENSCSEG00000018298	dab1b (ENSCSEG00000018313)	c8b (ENSCSEG00000018337)	C8A (ENSCSEG00000018354)	si:ch211-188c16.1 (ENSCSEG00000018362)	PLPP3 (ENSCSEG00000018379)	ENSCSEG00000018384	pgap6 (ENSCSEG00000018393)	rgs11 (ENSCSEG00000018404)	ints15 (ENSCSEG00000018432)	tfr1a (ENSCSEG00000018440) #22	ENSCSEG00000018456	ENSCSEG00000018481	carmil3 (ENSCSEG00000018515)	ENSCSEG00000018540	rem2 (ENSCSEG00000018544)	ENSCSEG00000018552	TGM1 (ENSCSEG00000018559)	abhd4 (ENSCSEG00000018573)	dad1 (ENSCSEG00000018581)	ENSCSEG00000018601	anxa13l (ENSCSEG00000018618)	ENSCSEG00000018646	tlk1b (ENSCSEG00000018660)	DIS3L2 (ENSCSEG00000018729)	gorasp2 (ENSCSEG00000018760)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Seriola	ANCESTRAL SPECIES		ENSGT01000000214434.F	ENSGT00940000164279.a	ENSGT00940000160907.l	ENSGT00940000158561.b	ENSGT00940000158056	ENSGT00390000013502.a.b	ENSGT00940000158038.c.b	ENSGT00940000160247	ENSGT00940000160126	ENSGT00530000063460.A.a	ENSGT00940000156450.d	ENSGT00530000063790.a.b	ENSGT00940000160060	ENSGT00940000160198	ENSGT00390000011370	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000158727.b.a.b	ENSGT00550000074836.o	ENSGT00940000156350.g	ENSGT00940000154811.B.a.b	ENSGT00940000156105.k.b	ENSGT00960000186677	ENSGT00940000166991	ENSGT00940000155918.c.b	ENSGT00530000063106.A
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	83	fggy (ENSSDUG00000006976)	ENSSDUG00000006936	PLPP6 (ENSSDUG00000006927)	MYOC (ENSSDUG00000006904)	ENSSDUG00000006828	ENSSDUG00000006780	dab1b (ENSSDUG00000006742)	c8b (ENSSDUG00000006589)	C8A (ENSSDUG00000006517)	si:ch211-188c16.1 (ENSSDUG00000006420)	PLPP3 (ENSSDUG00000006378)	ENSSDUG00000006367	pgap6 (ENSSDUG00000006350)	rgs11 (ENSSDUG00000006316)	ints15 (ENSSDUG00000006284)	tfr1a (ENSSDUG00000006251) #22	tfr1a (ENSSDUG00000006229) #22	ENSSDUG00000006092	ENSSDUG00000006048	ENSSDUG00000006025	ENSSDUG00000005996	mkxb (ENSSDUG00000005982)	rab18b (ENSSDUG00000005960)	PTCHD3 (ENSSDUG00000005940)	yme1l1b (ENSSDUG00000005852)	ENSSDUG00000005800	abi1b (ENSSDUG00000005740)	ENSSDUG00000005629	ENSSDUG00000005603	anxa13l (ENSSDUG00000005558)	ENSSDUG00000005547
Greater amberjack	MODERN SPECIES	83	ENSSDUG00000006936	PLPP6 (ENSSDUG00000006927)	MYOC (ENSSDUG00000006904)	ENSSDUG00000006828	ENSSDUG00000006780	dab1b (ENSSDUG00000006742)	c8b (ENSSDUG00000006589)	C8A (ENSSDUG00000006517)	si:ch211-188c16.1 (ENSSDUG00000006420)	PLPP3 (ENSSDUG00000006378)	ENSSDUG00000006367	pgap6 (ENSSDUG00000006350)	rgs11 (ENSSDUG00000006316)	ints15 (ENSSDUG00000006284)	tfr1a (ENSSDUG00000006251) #22	tfr1a (ENSSDUG00000006229) #22	ENSSDUG00000006092	ENSSDUG00000006048	ENSSDUG00000006025	ENSSDUG00000005996	mkxb (ENSSDUG00000005982)	rab18b (ENSSDUG00000005960)	PTCHD3 (ENSSDUG00000005940)	yme1l1b (ENSSDUG00000005852)	ENSSDUG00000005800	abi1b (ENSSDUG00000005740)	ENSSDUG00000005629	ENSSDUG00000005603	anxa13l (ENSSDUG00000005558)	ENSSDUG00000005547	ENSSDUG00000005528
Barramundi perch	MODERN SPECIES	69	JUN (ENSLCAG00010001739)	fggy (ENSLCAG00010001785)	ENSLCAG00010001920	PLPP6 (ENSLCAG00010001928)	MYOC (ENSLCAG00010001931)	ENSLCAG00010001955	ENSLCAG00010002051	dab1b (ENSLCAG00010002069)	c8b (ENSLCAG00010002078)	C8A (ENSLCAG00010002093)	ENSLCAG00010002114	PLPP3 (ENSLCAG00010002146)	pgap6 (ENSLCAG00010002210)	rgs11 (ENSLCAG00010002292)	ints15 (ENSLCAG00010002487)	tfr1a (ENSLCAG00010002512) #22	ENSLCAG00010002560	ENSLCAG00010002571	ENSLCAG00010002577	ENSLCAG00010002582	mkxb (ENSLCAG00010002585)	rab18b (ENSLCAG00010002591)	PTCHD3 (ENSLCAG00010002600)	yme1l1b (ENSLCAG00010002610)	ENSLCAG00010002632	abi1b (ENSLCAG00010002644)	ENSLCAG00010002664	anxa13l (ENSLCAG00010002678)	GPR158 (ENSLCAG00010002682)	DIS3L2 (ENSLCAG00010002739)	ENSLCAG00010002987
Pinecone sodierfish	MODERN SPECIES	8	TADA1 (ENSMMDG00005019010)	JUN (ENSMMDG00005019008)	fggy (ENSMMDG00005018477)	PRDX6 (ENSMMDG00005018448)	PLPP6 (ENSMMDG00005018445)	MYOC (ENSMMDG00005018442)	ENSMMDG00005018345	dab1b (ENSMMDG00005018337)	c8b (ENSMMDG00005017902)	C8A (ENSMMDG00005017887)	si:ch211-188c16.1 (ENSMMDG00005017884)	PLPP3 (ENSMMDG00005017883)	pgap6 (ENSMMDG00005017875)	rgs11 (ENSMMDG00005017863)	ints15 (ENSMMDG00005017858)	tfr1a (ENSMMDG00005017578) #22	ENSMMDG00005017558	ENSMMDG00005017553	ENSMMDG00005017550	ENSMMDG00005017547	ENSMMDG00005017543	ENSMMDG00005017423	mkxb (ENSMMDG00005017414)	rab18b (ENSMMDG00005017402)	PTCHD3 (ENSMMDG00005017399)	ENSMMDG00005017397	yme1l1b (ENSMMDG00005016333)	ENSMMDG00005016316	abi1b (ENSMMDG00005016199)	APBB1IP (ENSMMDG00005016196)	anxa13l (ENSMMDG00005016161)
Cod	MODERN SPECIES	21	ENSGMOG00000016949	ENSGMOG00000028995	ENSGMOG00000016989	ENSGMOG00000029380	ENSGMOG00000026753	ENSGMOG00000025008	ENSGMOG00000030965	ENSGMOG00000034219	C8B (ENSGMOG00000017166)	C8A (ENSGMOG00000017195)	ENSGMOG00000030576	PLPP3 (ENSGMOG00000031905)	ENSGMOG00000017236	ENSGMOG00000017251	ENSGMOG00000017278	ENSGMOG00000017342 #22	ENSGMOG00000028746	tsen15 (ENSGMOG00000018325)	ENSGMOG00000018316	sec22ba (ENSGMOG00000029129)	imp3 (ENSGMOG00000018162)	slc35a3b (ENSGMOG00000018150)	ENSGMOG00000018137	cmpk (ENSGMOG00000018121)	bcl6ab (ENSGMOG00000018097)	ENSGMOG00000018087	ENSGMOG00000017325	ENSGMOG00000027408	ENSGMOG00000017997	ENSGMOG00000017831	ENSGMOG00000017807
Protacanthopterygii	ANCESTRAL SPECIES	38	ENSGT00940000164582.a	ENSGT00390000013463	ENSGT00940000159537	ENSGT00940000154090.a	ENSGT00940000155265.a.h	ENSGT00390000006738.b	ENSGT00940000166207	ENSGT00530000064112.b.a.a	ENSGT00940000157075	ENSGT00940000168147.f	ENSGT00390000014167	ENSGT00940000155106	ENSGT00390000004989.a.b	ENSGT00940000160430	ENSGT00390000009194	ENSGT01030000234598.a.a.a.b #22	ENSGT01030000234826	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b.a.b	ENSGT00440000037780.b	ENSGT00940000156232.a	ENSGT00940000156227.e	ENSGT00940000157325	ENSGT00940000155918.c.b	ENSGT00940000166991	ENSGT00940000156105.k.b	ENSGT00940000154811.B.a.b	ENSGT00940000156350.g	ENSGT00550000074836.o	ENSGT00940000158727.b.a.b	ENSGT01000000214434.A
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	345	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e	ENSGT00940000156678.d	ENSGT00940000157075	ENSGT00940000168147.f	ENSGT00390000014167	ENSGT00940000155106.ab	ENSGT00940000160430.ob	ENSGT00390000009194.l	ENSGT00940000164807.B.g.b.a.a	ENSGT01030000234598.a.a.a.b.s #22
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e	ENSGT00940000164807.A.h.a.b.b.b.a	ENSGT00940000156678.d	ENSGT00940000157075	ENSGT00940000168147.f	ENSGT00390000014167	ENSGT00940000155106.ab	ENSGT00390000004989.a.a.b.a	ENSGT00940000160430.ob	ENSGT00390000009194.l	ENSGT00940000164807.B.g.b.a.a	ENSGT01030000234598.a.a.a.b.s #22	ENSGT00940000165248.b	ENSGT01100000263502.A.a.a.b.a.b.h	ENSGT00940000159828.b.b.b	ENSGT00440000037780.b.d	ENSGT00940000156227.e.d	ENSGT00940000157325	ENSGT00940000155918.c.b.l	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a	ENSGT00940000166991	ENSGT00940000156105.k.b.b	ENSGT00940000154811.B.a.b.d	ENSGT00940000156350.g.j	ENSGT00940000156350.g.i	ENSGT00550000074836.o.d	ENSGT00940000158727.b.a.b
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e	ENSGT00940000164807.A.h.a.b.b.b.a	ENSGT00940000156678.d	ENSGT00940000157075	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106.ab	ENSGT00390000004989.a.a.b.a	ENSGT00940000160430.ob	ENSGT00390000009194.l	ENSGT00940000164807.B.g.b.a.a	ENSGT01030000234598.a.a.a.b.s #22	ENSGT00940000165248.b	ENSGT01100000263502.A.a.a.b.a.b.h	ENSGT00940000159828.b.b.b	ENSGT00440000037780.b.d	ENSGT00940000156227.e.d	ENSGT00940000157325	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a	ENSGT00940000155918.c.b.l	ENSGT00940000166991	ENSGT00940000156105.k.b.b	ENSGT00940000154811.B.a.b.d	ENSGT00940000156350.g.j	ENSGT00940000156350.g.i	ENSGT00550000074836.o.d	ENSGT00940000158727.b.a.b
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000033169	ENSOMYG00000033155	ENSOMYG00000056102	ENSOMYG00000032805	ENSOMYG00000032609	ENSOMYG00000032487	ENSOMYG00000031896	LYRM4 (ENSOMYG00000031789)	ENSOMYG00000031781	ENSOMYG00000031766	ENSOMYG00000031755	ENSOMYG00000055023	ENSOMYG00000031741	ENSOMYG00000031721	ENSOMYG00000071548	tfr1a (ENSOMYG00000031642) #22	ENSOMYG00000077350	ENSOMYG00000032347	adipoqb (ENSOMYG00000032341)	ENSOMYG00000032065	ENSOMYG00000031995	ENSOMYG00000031917	ENSOMYG00000066615	ENSOMYG00000031867	ENSOMYG00000031859	anxa13l (ENSOMYG00000031821)	ENSOMYG00000031791	ENSOMYG00000031203	ENSOMYG00000031068	ENSOMYG00000029833	ENSOMYG00000029470
Oncorhynchus_a	ANCESTRAL SPECIES	57	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e	ENSGT00940000164807.A.h.a.b.b.b.a	ENSGT00940000156678.d	ENSGT00940000157075	ENSGT00940000157289.a	ENSGT00390000014167	ENSGT00940000155106.ab	ENSGT00390000004989.a.a.b.a	ENSGT00940000160430.ob	ENSGT00390000009194.l	ENSGT01030000234598.a.a.a.b.s #22	ENSGT00940000165248.b	ENSGT01100000263502.A.a.a.b.a.b.h	ENSGT00940000159828.b.b.b	ENSGT00440000037780.b.d	ENSGT00940000156227.e.d	ENSGT00940000157325	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a	ENSGT00940000155918.c.b.l	ENSGT00940000166991	ENSGT00940000156105.k.b.b	ENSGT00940000154811.B.a.b.d	ENSGT00940000156350.g.j	ENSGT00940000156350.g.i	ENSGT00550000074836.o.d	ENSGT00940000158727.b.a.b
Coho salmon	MODERN SPECIES	19	ENSOKIG00005044235	ENSOKIG00005044221	fastk (ENSOKIG00005044202)	ubtfl (ENSOKIG00005043957)	slc4a2a (ENSOKIG00005041478)	ENSOKIG00005041321	ENSOKIG00005041010	riok1 (ENSOKIG00005040116)	lyrm4 (ENSOKIG00005040058)	rpp40 (ENSOKIG00005040007)	ENSOKIG00005039994	ENSOKIG00005039990	NRBP2 (ENSOKIG00005039977)	ENSOKIG00005039960	ENSOKIG00005039946	tfr1a (ENSOKIG00005039916) #22	ENSOKIG00005039905	ENSOKIG00005039830	ENSOKIG00005039806	ENSOKIG00005039289	ENSOKIG00005039263	rab18b (ENSOKIG00005039200)	ENSOKIG00005039184	GPR158 (ENSOKIG00005039147)	ENSOKIG00005039055	ENSOKIG00005039006	abi1b (ENSOKIG00005037915)	yme1l1b (ENSOKIG00005036961)	PTCHD3 (ENSOKIG00005036827)	gk5 (ENSOKIG00005036448)	atp1b3a (ENSOKIG00005036411)
Chinook salmon	MODERN SPECIES	20	faim2a (ENSOTSG00005036075)	afg3l2 (ENSOTSG00005044405)	fastk (ENSOTSG00005044404)	ubtfl (ENSOTSG00005044306)	slc4a2a (ENSOTSG00005041554)	ENSOTSG00005041540	dnajc1 (ENSOTSG00005041532)	riok1 (ENSOTSG00005041491)	ENSOTSG00005041488	rpp40 (ENSOTSG00005041487)	ENSOTSG00005041486	ENSOTSG00005041484	NRBP2 (ENSOTSG00005041481)	ttc19 (ENSOTSG00005041479)	ENSOTSG00005041478	tfr1a (ENSOTSG00005041477) #22	ENSOTSG00005041474	adipoqb (ENSOTSG00005041473)	ENSOTSG00005041443	ENSOTSG00005041439	rab18b (ENSOTSG00005041419)	ENSOTSG00005041416	ENSOTSG00005041415	anxa13l (ENSOTSG00005041371)	ENSOTSG00005041368	ENSOTSG00005041366	abi1b (ENSOTSG00005041094)	ENSOTSG00005041090	ENSOTSG00005041086	yme1l1b (ENSOTSG00005036346)	PTCHD3 (ENSOTSG00005036321)
Salmo	ANCESTRAL SPECIES	5	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e	ENSGT00940000164807.A.h.a.b.b.b.a	ENSGT00940000156678.d	ENSGT00940000157075	ENSGT00940000168147.f	ENSGT00390000014167	ENSGT00940000155106.ab	ENSGT00390000004989.a.a.b.a	ENSGT00940000160430.ob	ENSGT00390000009194.l	ENSGT00940000164807.B.g.b.a.a	ENSGT01030000234598.a.a.a.b.s #22	ENSGT00940000165248.b	ENSGT01100000263502.A.a.a.b.a.b.h	ENSGT00940000159828.b.b.b	ENSGT00440000037780.b.d	ENSGT00940000156227.e.d	ENSGT00940000157325	ENSGT01100000263473.a.b.g.a.a.b.a.b.a.a.a	ENSGT00940000155918.c.b.l	ENSGT00940000166991	ENSGT00940000156105.k.b.b	ENSGT00940000154811.B.a.b.d	ENSGT00940000156350.g.i	ENSGT00550000074836.o.d	ENSGT00940000158727.b.a.b.k	ENSGT01000000214434.A
River trout	MODERN SPECIES	24	faim2a (ENSSTUG00000014979)	afg3l2 (ENSSTUG00000014778)	fastk (ENSSTUG00000014768)	ubtfl (ENSSTUG00000014194)	slc4a2a (ENSSTUG00000010174)	ENSSTUG00000010064	dnajc1 (ENSSTUG00000010034)	riok1 (ENSSTUG00000009030)	lyrm4 (ENSSTUG00000008968)	rpp40 (ENSSTUG00000008948)	ENSSTUG00000008941	ENSSTUG00000008937	NRBP2 (ENSSTUG00000008887)	ttc19 (ENSSTUG00000008852)	ENSSTUG00000008837	tfr1a (ENSSTUG00000008708) #22	ENSSTUG00000008689	ENSSTUG00000008661	adipoqb (ENSSTUG00000008651)	ENSSTUG00000008223	ENSSTUG00000008210	rab18b (ENSSTUG00000008179)	ENSSTUG00000008172	GPR158 (ENSSTUG00000007578)	anxa13l (ENSSTUG00000007505)	ENSSTUG00000007476	abi1b (ENSSTUG00000007372)	yme1l1b (ENSSTUG00000006237)	ENSSTUG00000006205	ENSSTUG00000006196	gk5 (ENSSTUG00000006147)
Atlantic salmon	MODERN SPECIES	22	ubtfl (ENSSSAG00000051633)	ENSSSAG00000048847	ENSSSAG00000048786	ENSSSAG00000048696	ENSSSAG00000047048	ENSSSAG00000047008	rpp40 (ENSSSAG00000046997)	ENSSSAG00000046986	ENSSSAG00000084349	ENSSSAG00000046982	ENSSSAG00000096602	ENSSSAG00000046955	ENSSSAG00000084324	ENSSSAG00000088342	ENSSSAG00000046938	tfr1a (ENSSSAG00000046758) #22	ENSSSAG00000046711	ENSSSAG00000114307	ENSSSAG00000111843	adipoqb (ENSSSAG00000058368)	ENSSSAG00000058143	ENSSSAG00000056756	rab18 (ENSSSAG00000087771)	ENSSSAG00000060276	ENSSSAG00000060353	ANX13 (ENSSSAG00000060374)	ENSSSAG00000060631	ENSSSAG00000087514	ENSSSAG00000099774	ENSSSAG00000063163	ENSSSAG00000063641
Huchen	MODERN SPECIES	318	ENSHHUG00000040262	ENSHHUG00000040274	afg3l2 (ENSHHUG00000040280)	fastk (ENSHHUG00000040318)	ubtfl (ENSHHUG00000040332)	slc4a2a (ENSHHUG00000040378)	ENSHHUG00000041549	dnajc1 (ENSHHUG00000041554)	riok1 (ENSHHUG00000041564)	lyrm4 (ENSHHUG00000041677)	rpp40 (ENSHHUG00000041696)	ENSHHUG00000041701	ENSHHUG00000041704	ttc19 (ENSHHUG00000041717)	ENSHHUG00000041736	tfr1a (ENSHHUG00000041777) #22
Salmoninae	ANCESTRAL SPECIES	497																ENSGT01030000234598.a.a.a.b.t #22	ENSGT00940000165248.a	ENSGT01100000263502.A.a.a.b.a.b.g	ENSGT00940000159828.b.b.a	ENSGT00440000037780.b.c	ENSGT00940000156232.a	ENSGT00940000156227.e.c	ENSGT00940000155918.c.b.k	ENSGT00940000156105.k.b.a	ENSGT00940000154811.B.a.b.c	ENSGT00990000211585	ENSGT01010000223632	ENSGT00550000074836.o.c	ENSGT01030000234579.A.b.b.d	ENSGT00940000160511.a.d	ENSGT00940000155511.n.b.e.a
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000156042.h	ENSGT00940000158259.a.f	ENSGT00940000165754.g.a	ENSGT01030000234607.A.a.a.b.j	ENSGT00390000002862.tb.p	ENSGT00630000089910.u.b	ENSGT00940000159820.c	ENSGT01030000234667.a.a.b.f.d	ENSGT00940000155562.l.a.c	ENSGT00910000144592	ENSGT00930000151022.b.d	ENSGT00940000157031.l.d	ENSGT00530000064112.a	ENSGT00940000157116.e.l	ENSGT00940000164867.a	ENSGT01030000234598.a.a.a.b.t #22	ENSGT00940000165248.a	ENSGT01100000263502.A.a.a.b.a.b.g	ENSGT00940000159828.b.b.a	ENSGT00440000037780.b.c	ENSGT00940000156232.a	ENSGT00940000156227.e.c	ENSGT01010000224674	ENSGT00940000155918.c.b.k	ENSGT00940000156105.k.b.a	ENSGT00940000154811.B.a.b.c	ENSGT00990000211585	ENSGT01010000223632.a	ENSGT00550000074836.o.c	ENSGT01030000234579.A.b.b.d	ENSGT00940000160511.a.d
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000158259.a.f	ENSGT00940000165754.g.a	ENSGT01030000234607.A.a.a.b.j	ENSGT00390000002862.tb.p	ENSGT00630000089910.u.b	ENSGT00940000159820.c	ENSGT00930000151367.d.a.e	ENSGT01030000234667.a.a.b.f.d	ENSGT00940000155562.l.a.c	ENSGT00910000144592	ENSGT00930000151022.b.d	ENSGT00940000157031.l.d	ENSGT00530000064112.a	ENSGT00940000157116.e.l	ENSGT00940000164867.a	ENSGT01030000234598.a.a.a.b.t #22	ENSGT00940000165248.a	ENSGT01100000263502.A.a.a.b.a.b.g	ENSGT00940000159828.b.b.a	ENSGT00440000037780.b.c	ENSGT00940000156232.a	ENSGT00940000156227.e.c	ENSGT01010000224674	ENSGT00940000155918.c.b.k	ENSGT00940000156105.k.b.a	ENSGT00940000154811.B.a.b.c	ENSGT01010000223632.a	ENSGT00550000074836.o.c	ENSGT01030000234579.A.b.b.d	ENSGT00940000160511.a.d	ENSGT00940000155511.n.b.e.a
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000071034	ENSSSAG00000105940	ENSSSAG00000071064	ccr9a (ENSSSAG00000071116)	ENSSSAG00000071137	ENSSSAG00000071197	tmx3a (ENSSSAG00000071201)	ENSSSAG00000071227	ENSSSAG00000071519	ENSSSAG00000001598	ENSSSAG00000104719	ENSSSAG00000116373	ENSSSAG00000039667	ENSSSAG00000110054	ENSSSAG00000098401	tfr1a (ENSSSAG00000055557) #22	tnk2 (ENSSSAG00000055720)	ENSSSAG00000108797	ENSSSAG00000100574	ENSSSAG00000059216	ENSSSAG00000107652	adipoqb (ENSSSAG00000118832)	ENSSSAG00000055900	ENSSSAG00000094773	ENSSSAG00000055956	ENSSSAG00000118224	ENSSSAG00000095661	ENSSSAG00000056797	ENSSSAG00000056828	ENSSSAG00000122195	ENSSSAG00000113935
River trout	MODERN SPECIES	13	fastk (ENSSTUG00000044790)	hnmt (ENSSTUG00000044827)	abcf2a (ENSSTUG00000034821)	bfsp2 (ENSSTUG00000034937)	zgc:136930 (ENSSTUG00000034950)	ccr9a (ENSSTUG00000034957)	ENSSTUG00000034977	ENSSTUG00000035383	tmx3a (ENSSTUG00000035412)	cdh7a (ENSSTUG00000035470)	ENSSTUG00000036093	ENSSTUG00000036119	ENSSTUG00000036125	inhbab (ENSSTUG00000036129)	ENSSTUG00000036380	tfr1a (ENSSTUG00000044658) #22	ENSSTUG00000044747	ENSSTUG00000044943	adipoqb (ENSSTUG00000044966)	ENSSTUG00000044990	ENSSTUG00000045097	mkxb (ENSSTUG00000045159)	ENSSTUG00000045177	GPR158 (ENSSTUG00000045180)	ENSSTUG00000045198	abi1b (ENSSTUG00000045220)	yme1l1b (ENSSTUG00000045304)	ENSSTUG00000045817	atp1b3a (ENSSTUG00000045819)	grk7a (ENSSTUG00000045827)	agfg1b (ENSSTUG00000045840)
Huchen	MODERN SPECIES	3417																ENSHHUG00000003384 #22	ENSHHUG00000003388
Northern pike	MODERN SPECIES	2	faim2a (ENSELUG00000025688)	RNF213 (ENSELUG00000017512)	afg3l2 (ENSELUG00000017414)	fastk (ENSELUG00000017385)	ubtfl (ENSELUG00000017313)	slc4a2a (ENSELUG00000017238)	bmi1b (ENSELUG00000017194)	dnajc1 (ENSELUG00000017142)	nebl (ENSELUG00000017101)	riok1 (ENSELUG00000017029)	lyrm4 (ENSELUG00000017018)	rpp40 (ENSELUG00000017004)	CDY1 (ENSELUG00000016966)	NRBP2 (ENSELUG00000016937)	ttc19 (ENSELUG00000027267)	tfr1a (ENSELUG00000016854) #22	ENSELUG00000016720	ENSELUG00000025394	ENSELUG00000016643	ENSELUG00000016614	ENSELUG00000016536	mkxb (ENSELUG00000016464)	rab18b (ENSELUG00000030199)	ENSELUG00000027488	GPR158 (ENSELUG00000016408)	ENSELUG00000016382	ENSELUG00000030794	anxa13l (ENSELUG00000001335)	ENSELUG00000016295	abi1b (ENSELUG00000016234)	ENSELUG00000016101
Osteoglossiformes	ANCESTRAL SPECIES	197	ENSGT00940000156789	ENSGT00530000063947.B	ENSGT00940000164140	ENSGT00390000004940.a.a	ENSGT00390000012141.a	ENSGT00390000013904	ENSGT00940000157096	ENSGT00940000157155	ENSGT00940000157183.b	ENSGT00940000160041	ENSGT00940000166623	ENSGT00940000154694	ENSGT00940000159706	ENSGT01020000230600	ENSGT01100000263557.A.a	ENSGT01030000234598.a.a.a.b #22	ENSGT00940000165248	ENSGT01100000263502.A.a.a.b	ENSGT00940000159828.b.b	ENSGT00500000045505.a	ENSGT00390000000076	ENSGT00390000011600	ENSGT00970000196844	ENSGT00510000046981.b.b	ENSGT00940000160075	ENSGT00390000002757	ENSGT00940000165431	ENSGT00390000015520
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015011454	ENSSFOG00015011433	stxbp3 (ENSSFOG00015011374)	ENSSFOG00015011293	ENSSFOG00015011251	eeig2a (ENSSFOG00015011213)	PRKAB2 (ENSSFOG00015011191)	ENSSFOG00015011132	prrx1a (ENSSFOG00015011095)	gorab (ENSSFOG00015011069)	kifap3b (ENSSFOG00015011035)	ENSSFOG00015010963	eif4e2 (ENSSFOG00015010899)	CAPN10 (ENSSFOG00015010857)	ENSSFOG00015010836	tfr1a (ENSSFOG00015010794) #22	ENSSFOG00015010731	tmtopsb (ENSSFOG00015010704)	adipoqb (ENSSFOG00015010696)	and2 (ENSSFOG00015010681)	cops9 (ENSSFOG00015027033)	otos (ENSSFOG00015010657)	ENSSFOG00015024808	apoda.1 (ENSSFOG00015010637)	samd7 (ENSSFOG00015010619)	sec62 (ENSSFOG00015010606)	ENSSFOG00015029937	nadkb (ENSSFOG00015030602)	gpr160 (ENSSFOG00015010516)	u2surp (ENSSFOG00015010470)	PCOLCE2 (ENSSFOG00015010419)
P. kingsleyae	MODERN SPECIES	168	YEATS2 (ENSPKIG00000014684)	MAP6D1 (ENSPKIG00000014661)	ENSPKIG00000014637	camk2n1a (ENSPKIG00000014615)	mul1a (ENSPKIG00000014601)	alg3 (ENSPKIG00000014561)	VWA5B2 (ENSPKIG00000014524)	COPS7B (ENSPKIG00000014503)	ENSPKIG00000014480	chrng (ENSPKIG00000014451)	ENSPKIG00000014433	eif4e2 (ENSPKIG00000014411)	CAPN10 (ENSPKIG00000014289)	ENSPKIG00000014243	ENSPKIG00000014223	tfr1a (ENSPKIG00000014140) #22	ENSPKIG00000013992	ENSPKIG00000013933	adipoqb (ENSPKIG00000013924)	and2 (ENSPKIG00000013907)	cops9 (ENSPKIG00000013891)	otos (ENSPKIG00000013877)	ENSPKIG00000013854
Spotted gar	MODERN SPECIES	652	ing5a (ENSLOCG00000006651)	d2hgdh (ENSLOCG00000006684)	acvr1l (ENSLOCG00000006702)	plekhb2 (ENSLOCG00000006720)	otomp (ENSLOCG00000006736)	hs6st1b (ENSLOCG00000006754)	uggt1 (ENSLOCG00000006770)	epha4b (ENSLOCG00000006817)	ENSLOCG00000006861	ENSLOCG00000006881	ccl34b.4 (ENSLOCG00000006892)	ENSLOCG00000006901	ENSLOCG00000006917	ENSLOCG00000006933	ENSLOCG00000006945	tfr1b (ENSLOCG00000006962) #22	ENSLOCG00000006982	tmtopsb (ENSLOCG00000007008)	ENSLOCG00000007023	adipoqb (ENSLOCG00000007040)	and2 (ENSLOCG00000007053)	cops9 (ENSLOCG00000007062)	otos (ENSLOCG00000017403)	apoda.1 (ENSLOCG00000007072)	apoda.2 (ENSLOCG00000007087)	ENSLOCG00000007101	ENSLOCG00000007120	LRRC34 (ENSLOCG00000007136)	LRRIQ4 (ENSLOCG00000007153)	LRRC31 (ENSLOCG00000007167)	samd7 (ENSLOCG00000007177)
Reedfish	MODERN SPECIES	10	WDR53 (ENSECRG00000005496) #12	ENSECRG00000005538	srprb (ENSECRG00000005585)	hs6st1b (ENSECRG00000005609)	ENSECRG00000005617	ENSECRG00000005640	uggt1 (ENSECRG00000005675)	epha4b (ENSECRG00000005738)	ENSECRG00000005758	ENSECRG00000005764	ENSECRG00000005771	ENSECRG00000005777	ENSECRG00000005783	ENSECRG00000005789	ENSECRG00000005806	TFRC (ENSECRG00000005846) #22	ENSECRG00000005870	lim2.2 (ENSECRG00000005896)	ftsj3 (ENSECRG00000005915)	ENSECRG00000005946	plaat1 (ENSECRG00000005967)	polr2h (ENSECRG00000005981)	ENSECRG00000005998	ENSECRG00000006008	plaat1 (ENSECRG00000006027)	polr2h (ENSECRG00000006035)	ENSECRG00000006047	ephb3a (ENSECRG00000006085)	hykk.2 (ENSECRG00000006140)	NMUR1 (ENSECRG00000006171)	pcyt1ab (ENSECRG00000004498) #19
Elephant shark	MODERN SPECIES	1486	ENSCMIG00000009159	ahsg (ENSCMIG00000009164)	ENSCMIG00000009169	ENSCMIG00000009171	ENSCMIG00000009175	ENSCMIG00000009176	slc19a3b (ENSCMIG00000009180)	daw1 (ENSCMIG00000009201)	sphkap (ENSCMIG00000009247)	mul1a (ENSCMIG00000009269)	ENSCMIG00000009271	camk2n1a (ENSCMIG00000009274)	alg3 (ENSCMIG00000009275)	ENSCMIG00000009279	ENSCMIG00000009283 #21	ENSCMIG00000009292 #22	ENSCMIG00000009313	ENSCMIG00000009333 #24	ENSCMIG00000009337 #24	RUBCN (ENSCMIG00000009354) #26	FYTTD1 (ENSCMIG00000009426) #27	LRCH3 (ENSCMIG00000009444) #28	ENSCMIG00000009470 #29	rpl35a (ENSCMIG00000009486) #30	ENSCMIG00000009509	psmd1 (ENSCMIG00000009561)	htr2b (ENSCMIG00000009676)	ENSCMIG00000009677	chrnd (ENSCMIG00000009679)	ENSCMIG00000009688	eif4e2 (ENSCMIG00000009692)
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Euteleostomi	ANCESTRAL SPECIES	464													ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT00940000156850.a.a	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198
Sarcopterygii	ANCESTRAL SPECIES	354										ENSGT00940000162936	ENSGT00940000159845	ENSGT00510000048483	ENSGT00390000017226	ENSGT00940000159400	ENSGT00940000156850.a.a	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198
Tetrapoda	ANCESTRAL SPECIES	159										ENSGT00940000159400	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00950000183189.a.a	ENSGT00940000153916.A	ENSGT00940000163250.A	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT00940000156309.A
Amniota	ANCESTRAL SPECIES	75			ENSGT01010000225782	ENSGT00940000158661	ENSGT00940000158058	ENSGT01050000244976.b.b.b.a.a.a	ENSGT00940000160598	ENSGT00390000000334	ENSGT00940000161755	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370	ENSGT00950000183189.a.a	ENSGT00940000162099	ENSGT00940000153916.A	ENSGT00940000163250.A	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT00940000156309.A
Sauria	ANCESTRAL SPECIES	59																ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370	ENSGT00950000183189.a.a	ENSGT00940000162099	ENSGT00940000153916.A	ENSGT00940000163250.A	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT01030000236262
Archelosauria	ANCESTRAL SPECIES	85																ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370
Cryptodira	ANCESTRAL SPECIES	84											ENSGT00940000160860	ENSGT01000000214413.b.b	ENSGT00940000159845	ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370	ENSGT00390000017455	ENSGT00940000159264	ENSGT00940000159295	ENSGT00940000160105	ENSGT00390000001520.x
Testudinoidea	ANCESTRAL SPECIES	61											ENSGT00940000160860	ENSGT01000000214413.b.b	ENSGT00940000159845	ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000155531.a.b	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370	ENSGT00390000017455	ENSGT00940000159264	ENSGT00940000159295	ENSGT00940000160105	ENSGT00390000001520.x	ENSGT00390000001520.y	ENSGT00950000182805.a.a.b.b
Emydidae	ANCESTRAL SPECIES	249															ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000155531.a.b
painted turtle	MODERN SPECIES	1913															ENSCPBG00000011302	TFR2 (ENSCPBG00000011292) ##22	ENSCPBG00000011290
Testudinidae	ANCESTRAL SPECIES	84											ENSGT00940000160860	ENSGT01000000214413.b.b	ENSGT00940000159845	ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000166370	ENSGT00390000017455	ENSGT00940000159264	ENSGT00940000159295	ENSGT00940000160105	ENSGT00390000001520.x	ENSGT00390000001520.y	ENSGT00950000182805.a.a.b.b
Goode s thornscrub tortoise	MODERN SPECIES	163														POP7 (ENSGEVG00005020629)	EPO (ENSGEVG00005020625)	TFR2 (ENSGEVG00005020620) ##22	ENSGEVG00005020613	MEPCE (ENSGEVG00005020607)	TSC22D4 (ENSGEVG00005020600)	NYAP1 (ENSGEVG00005020596)	AGFG2 (ENSGEVG00005020592)	ENSGEVG00005020588	ENSGEVG00005020583	ENSGEVG00005020569 #28	PCOLCE (ENSGEVG00005020555)	KIF1C (ENSGEVG00005020531)	CAMTA2 (ENSGEVG00005020504)	SPAG7 (ENSGEVG00005020501)	CHRNE (ENSGEVG00005020493)	MINK1 (ENSGEVG00005016795)	ENSGEVG00005014830
Abingdon island giant tortoise	MODERN SPECIES	2398											SRRT (ENSCABG00000022600)	ENSCABG00000022601	GNB2 (ENSCABG00000022602)	ENSCABG00000022603	EPO (ENSCABG00000022604)	TFR2 (ENSCABG00000022605) ##22	ENSCABG00000022606	ENSCABG00000022607	MEPCE (ENSCABG00000022608)	PPP1R35 (ENSCABG00000022609)	ENSCABG00000022610	NYAP1 (ENSCABG00000022611)	AGFG2 (ENSCABG00000022612)	ENSCABG00000022614	FBXO24 (ENSCABG00000022616)	PCOLCE (ENSCABG00000022617)	KIF1C (ENSCABG00000022618)	SPAG7 (ENSCABG00000022619)	ENO3 (ENSCABG00000022620)	ENSCABG00000022621
Chinese turtle	MODERN SPECIES	421														ENSPSIG00000008597	POP7 (ENSPSIG00000000415)	TFR2 (ENSPSIG00000007596) ##22	ENSPSIG00000007352	ENSPSIG00000007277	MEPCE (ENSPSIG00000007183)	PPP1R35 (ENSPSIG00000007205)	TSC22D4 (ENSPSIG00000007123)	NYAP1 (ENSPSIG00000007050)	AGFG2 (ENSPSIG00000006532)	ENSPSIG00000005748 #28	FBXO24 (ENSPSIG00000005577)	PCOLCE (ENSPSIG00000005273)	ENSPSIG00000005198	KIF1C (ENSPSIG00000004817)	CAMTA2 (ENSPSIG00000004616)	SPAG7 (ENSPSIG00000004264)	ENO3 (ENSPSIG00000004188)
Lepidosauria	ANCESTRAL SPECIES	122														ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000155531.a.b	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00950000183189.a.a	ENSGT00940000162099	ENSGT00940000153916.A	ENSGT00940000163250.A	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT01030000236262	ENSGT00940000156309.B	ENSGT01030000234567.B.b.cb.b	ENSGT00940000162036	ENSGT00940000161727
Episquamata	ANCESTRAL SPECIES	31											ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000155531.a.b	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00950000183189.a.a	ENSGT00940000162099	ENSGT00940000153916.A	ENSGT00940000163250.A.d	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT01030000236262	ENSGT00940000156309.B	ENSGT01030000234567.B.b.cb.b	ENSGT00940000162036	ENSGT00940000161727.c.a
Laterata	ANCESTRAL SPECIES	26	ENSGT00940000166370	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00940000177426	ENSGT00940000155941.B	ENSGT00940000162467.a.b	ENSGT00390000005492	ENSGT00940000162936	ENSGT00940000159400	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT00510000048483	ENSGT00390000017226	ENSGT01030000234598.a.a.b ##22	ENSGT00940000155531.a.b	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000160057	ENSGT00990000205849	ENSGT00950000183189.a.a	ENSGT00940000162099	ENSGT00940000153916.A	ENSGT00940000163250.A.d	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT00940000156309.B	ENSGT00940000161727.c.a.b	ENSGT00940000162036
Common wall lizard	MODERN SPECIES	4	ENSPMRG00000012357	ENSPMRG00000012275	ENSPMRG00000012261	SRRT (ENSPMRG00000012255)	ENSPMRG00000012251	ENSPMRG00000012246	UFSP1 (ENSPMRG00000012243)	SLC12A9 (ENSPMRG00000012238)	TMEM203 (ENSPMRG00000012237)	ENSPMRG00000012235	GIGYF1 (ENSPMRG00000012229)	GNB2 (ENSPMRG00000012223)	ACTL6B (ENSPMRG00000012219)	ENSPMRG00000012213	POP7 (ENSPMRG00000012210)	TFR2 (ENSPMRG00000012193) ##22	ENSPMRG00000012175	ENSPMRG00000012166	MEPCE (ENSPMRG00000012163)	ENSPMRG00000012161	ENSPMRG00000012159	ENSPMRG00000012155	EPHB4 (ENSPMRG00000012153)	ENSPMRG00000012145	FXR2 (ENSPMRG00000012121)	SOX15 (ENSPMRG00000012111)	MPDU1 (ENSPMRG00000012106)	ENSPMRG00000012103	CD68 (ENSPMRG00000012097)	EIF4A1 (ENSPMRG00000012087)	ENSPMRG00000012075
Argentine black and white tegu	MODERN SPECIES	38	ENSSMRG00000001410	AGFG2 (ENSSMRG00000001414)	NYAP1 (ENSSMRG00000001427)	TSC22D4 (ENSSMRG00000001430)	ENSSMRG00000001461	ENSSMRG00000001511	SRRT (ENSSMRG00000001516)	UFSP1 (ENSSMRG00000001552)	SLC12A9 (ENSSMRG00000001558)	GIGYF1 (ENSSMRG00000001580)	GNB2 (ENSSMRG00000002288)	ACTL6B (ENSSMRG00000002292)	ENSSMRG00000002792	POP7 (ENSSMRG00000002793)	ENSSMRG00000002795	TFR2 (ENSSMRG00000002796) ##22	ENSSMRG00000002798	MEPCE (ENSSMRG00000002826)	PPP1R35 (ENSSMRG00000002831)	EPHB4 (ENSSMRG00000002836)	ENSSMRG00000002841	FXR2 (ENSSMRG00000002847)	ENSSMRG00000002865	MPDU1 (ENSSMRG00000002867)	ENSSMRG00000002869	CD68 (ENSSMRG00000002879)	EIF4A1 (ENSSMRG00000002880)	ENSSMRG00000002890	ENSSMRG00000002903	ENSSMRG00000002921	ENSSMRG00000002941
Mammalia	ANCESTRAL SPECIES	114	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123
Theria	ANCESTRAL SPECIES	32	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a
Eutheria	ANCESTRAL SPECIES	22	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Hedgehog	MODERN SPECIES	8808																ENSEEUG00000008675 ##22
Common shrew	MODERN SPECIES	572																TFR2 (ENSSARG00000013708) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Suina	ANCESTRAL SPECIES	31	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Pig	MODERN SPECIES	11	VGF (ENSSSCG00000039053)	AP1S1 (ENSSSCG00000021145)	SERPINE1 (ENSSSCG00000025698)	TRIM56 (ENSSSCG00000034347)	ACHE (ENSSSCG00000030303)	UFSP1 (ENSSSCG00000041835)	SRRT (ENSSSCG00000024789)	TRIP6 (ENSSSCG00000027486)	SLC12A9 (ENSSSCG00000023619)	EPHB4 (ENSSSCG00000007675)	ZAN (ENSSSCG00000007674)	EPO (ENSSSCG00000007673)	POP7 (ENSSSCG00000007672)	GIGYF1 (ENSSSCG00000007668)	GNB2 (ENSSSCG00000007669)	TFR2 (ENSSSCG00000007671) ##22	MOSPD3 (ENSSSCG00000023255)	PCOLCE (ENSSSCG00000027466)	FBXO24 (ENSSSCG00000025096)	LRCH4 (ENSSSCG00000007667)	SAP25 (ENSSSCG00000046279)	ENSSSCG00000007665	AGFG2 (ENSSSCG00000007664)	NYAP1 (ENSSSCG00000030337)	TSC22D4 (ENSSSCG00000025164)	SPACDR (ENSSSCG00000062010)	PPP1R35 (ENSSSCG00000007652)	MEPCE (ENSSSCG00000023680)	ZCWPW1 (ENSSSCG00000007659)	ENSSSCG00000026653	PVRIG (ENSSSCG00000007656)
Chacoan peccary	MODERN SPECIES	893	VGF (ENSCWAG00000015964)	ENSCWAG00000015976	SERPINE1 (ENSCWAG00000016029)	TRIM56 (ENSCWAG00000016111)	ACHE (ENSCWAG00000016128)	UFSP1 (ENSCWAG00000016200)	SRRT (ENSCWAG00000016215)	TRIP6 (ENSCWAG00000016286)	SLC12A9 (ENSCWAG00000016351)	EPHB4 (ENSCWAG00000016441)	EPO (ENSCWAG00000017049)	POP7 (ENSCWAG00000017082)	GIGYF1 (ENSCWAG00000017101)	GNB2 (ENSCWAG00000017140)	ACTL6B (ENSCWAG00000017193)	TFR2 (ENSCWAG00000017281) ##22	MOSPD3 (ENSCWAG00000011636)	PCOLCE (ENSCWAG00000011681)	FBXO24 (ENSCWAG00000011733)	LRCH4 (ENSCWAG00000012434)	SAP25 (ENSCWAG00000012578)	ENSCWAG00000012691	AGFG2 (ENSCWAG00000012748)	NYAP1 (ENSCWAG00000012819)	TSC22D4 (ENSCWAG00000012932)	PPP1R35 (ENSCWAG00000013014)	MEPCE (ENSCWAG00000013070)	ZCWPW1 (ENSCWAG00000013132)	ENSCWAG00000013409	PVRIG (ENSCWAG00000013707)	STAG3 (ENSCWAG00000013814)
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Camelidae	ANCESTRAL SPECIES	24	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Arabian camel	MODERN SPECIES	9	AP1S1 (ENSCDRG00005014828)	SERPINE1 (ENSCDRG00005014882)	TRIM56 (ENSCDRG00005014926)	ACHE (ENSCDRG00005014935)	UFSP1 (ENSCDRG00005014985)	SRRT (ENSCDRG00005015004)	TRIP6 (ENSCDRG00005015128)	SLC12A9 (ENSCDRG00005015165)	EPHB4 (ENSCDRG00005015268)	ZAN (ENSCDRG00005015373)	EPO (ENSCDRG00005015667)	ENSCDRG00005015691	GIGYF1 (ENSCDRG00005015711)	GNB2 (ENSCDRG00005015892)	ACTL6B (ENSCDRG00005015978)	TFR2 (ENSCDRG00005016028) ##22	ENSCDRG00005016103	PCOLCE (ENSCDRG00005016189)	FBXO24 (ENSCDRG00005016285)	LRCH4 (ENSCDRG00005016520)	SAP25 (ENSCDRG00005016578)	ENSCDRG00005016606	AGFG2 (ENSCDRG00005016625)	NYAP1 (ENSCDRG00005016701)	TSC22D4 (ENSCDRG00005016759)	SPACDR (ENSCDRG00005016825)	PPP1R35 (ENSCDRG00005016846)	MEPCE (ENSCDRG00005016855)	ZCWPW1 (ENSCDRG00005016923)	ENSCDRG00005017261	PVRIG (ENSCDRG00005017290)
Alpaca	MODERN SPECIES	3422																ENSVPAG00000001237 ##22
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Pecora	ANCESTRAL SPECIES	10	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Caprinae	ANCESTRAL SPECIES	7	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Rambouillet Sheep	MODERN SPECIES	16	VGF (ENSOARG00020024849)	AP1S1 (ENSOARG00020024852)	SERPINE1 (ENSOARG00020014613)	TRIM56 (ENSOARG00020014642)	ACHE (ENSOARG00020014666)	UFSP1 (ENSOARG00020014801)	SRRT (ENSOARG00020014822)	TRIP6 (ENSOARG00020015033)	SLC12A9 (ENSOARG00020015090)	EPHB4 (ENSOARG00020015203)	EPO (ENSOARG00020016587)	POP7 (ENSOARG00020016637)	GIGYF1 (ENSOARG00020016668)	GNB2 (ENSOARG00020016806)	ACTL6B (ENSOARG00020016875)	TFR2 (ENSOARG00020017013) ##22	MOSPD3 (ENSOARG00020017196)	PCOLCE (ENSOARG00020017218)	FBXO24 (ENSOARG00020017278)	LRCH4 (ENSOARG00020017539)	SAP25 (ENSOARG00020017871)	ENSOARG00020017972	AGFG2 (ENSOARG00020017999)	NYAP1 (ENSOARG00020018129)	TSC22D4 (ENSOARG00020018202)	C7orf61 (ENSOARG00020018280)	PPP1R35 (ENSOARG00020018352)	MEPCE (ENSOARG00020018388)	ZCWPW1 (ENSOARG00020018449)	ENSOARG00020018614	PVRIG (ENSOARG00020018895)
Goat	MODERN SPECIES	17	AP1S1 (ENSCHIG00000011172)	SERPINE1 (ENSCHIG00000020858)	TRIM56 (ENSCHIG00000016250)	ACHE (ENSCHIG00000019677)	UFSP1 (ENSCHIG00000019868)	SRRT (ENSCHIG00000010495)	TRIP6 (ENSCHIG00000013618)	SLC12A9 (ENSCHIG00000026898)	EPHB4 (ENSCHIG00000021646)	ZAN (ENSCHIG00000012391)	EPO (ENSCHIG00000025561)	POP7 (ENSCHIG00000013484)	GIGYF1 (ENSCHIG00000010270)	GNB2 (ENSCHIG00000002627)	ACTL6B (ENSCHIG00000017510)	TFR2 (ENSCHIG00000012827) ##22	MOSPD3 (ENSCHIG00000012056)	PCOLCE (ENSCHIG00000013691)	FBXO24 (ENSCHIG00000025122)	LRCH4 (ENSCHIG00000019023)	ENSCHIG00000012720	ENSCHIG00000024522	AGFG2 (ENSCHIG00000013363)	NYAP1 (ENSCHIG00000014691)	TSC22D4 (ENSCHIG00000016474)	SPACDR (ENSCHIG00000015818)	PPP1R35 (ENSCHIG00000017928)	MEPCE (ENSCHIG00000008713)	ZCWPW1 (ENSCHIG00000024057)	ENSCHIG00000014207	PVRIG (ENSCHIG00000026650)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Bos	ANCESTRAL SPECIES	9	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b.c.a	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b.c.a	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799
Cow	MODERN SPECIES	17	VGF (ENSBTAG00000009868)	AP1S1 (ENSBTAG00000014468)	SERPINE1 (ENSBTAG00000014465)	ACHE (ENSBTAG00000001139)	SRRT (ENSBTAG00000001134)	UFSP1 (ENSBTAG00000050087)	TRIP6 (ENSBTAG00000024772)	SLC12A9 (ENSBTAG00000001131)	EPHB4 (ENSBTAG00000003446)	ZAN (ENSBTAG00000003432)	EPO (ENSBTAG00000003430)	POP7 (ENSBTAG00000026248)	GIGYF1 (ENSBTAG00000015738)	GNB2 (ENSBTAG00000006495)	ACTL6B (ENSBTAG00000008295)	TFR2 (ENSBTAG00000011738) ##22	MOSPD3 (ENSBTAG00000026246)	PCOLCE (ENSBTAG00000020528)	FBXO24 (ENSBTAG00000003169)	LRCH4 (ENSBTAG00000003160)	SAP25 (ENSBTAG00000039601)	IRS3 (ENSBTAG00000046753)	AGFG2 (ENSBTAG00000000713)	NYAP1 (ENSBTAG00000017456)	TSC22D4 (ENSBTAG00000015272)	SPACDR (ENSBTAG00000016765)	PPP1R35 (ENSBTAG00000026243)	MEPCE (ENSBTAG00000016763)	ZCWPW1 (ENSBTAG00000001068)	PILRA (ENSBTAG00000001066)	PVRIG (ENSBTAG00000010521)
Hybrid Bos Indicus	MODERN SPECIES	17	SERPINE1 (ENSBIXG00005011589)	TRIM56 (ENSBIXG00005011606)	ENSBIXG00005001149	ACHE (ENSBIXG00005006209)	UFSP1 (ENSBIXG00005011784)	SRRT (ENSBIXG00005011813)	ENSBIXG00005011857	SLC12A9 (ENSBIXG00005001200)	EPHB4 (ENSBIXG00005011964)	ZAN (ENSBIXG00005012092)	EPO (ENSBIXG00005012127)	ENSBIXG00005012156	GIGYF1 (ENSBIXG00005012231)	GNB2 (ENSBIXG00005012283)	ACTL6B (ENSBIXG00005000378)	TFR2 (ENSBIXG00005000351) ##22	MOSPD3 (ENSBIXG00005012435)	PCOLCE (ENSBIXG00005001342)	FBXO24 (ENSBIXG00005005700)	LRCH4 (ENSBIXG00005000313)	SAP25 (ENSBIXG00005012641)	ENSBIXG00005012664	ENSBIXG00005012741	NYAP1 (ENSBIXG00005012775)	TSC22D4 (ENSBIXG00005012809)	SPACDR (ENSBIXG00005012842)	PPP1R35 (ENSBIXG00005012861)	MEPCE (ENSBIXG00005012909)	ZCWPW1 (ENSBIXG00005012940)	ENSBIXG00005007479	PVRIG (ENSBIXG00005001473)
Bos_a	ANCESTRAL SPECIES	35				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b.c.a	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00940000163799
Wild yak	MODERN SPECIES	539													ENSBMUG00000001620	GNB2 (ENSBMUG00000001423)	ACTL6B (ENSBMUG00000001399)	TFR2 (ENSBMUG00000001365) ##22	MOSPD3 (ENSBMUG00000001342)	PCOLCE (ENSBMUG00000000524)	FBXO24 (ENSBMUG00000000500)	LRCH4 (ENSBMUG00000000446)	SAP25 (ENSBMUG00000000358)
Domestic yak	MODERN SPECIES	18				ACHE (ENSBGRG00000018236)	SRRT (ENSBGRG00000018324)	UFSP1 (ENSBGRG00000018470)	TRIP6 (ENSBGRG00000018487)	SLC12A9 (ENSBGRG00000018568)	EPHB4 (ENSBGRG00000018737)	ZAN (ENSBGRG00000019021)	EPO (ENSBGRG00000019517)	POP7 (ENSBGRG00000019634)	GIGYF1 (ENSBGRG00000019659)	GNB2 (ENSBGRG00000019977)	ACTL6B (ENSBGRG00000020030)	TFR2 (ENSBGRG00000020201) ##22	MOSPD3 (ENSBGRG00000020361)	PCOLCE (ENSBGRG00000020493)	FBXO24 (ENSBGRG00000020581)	LRCH4 (ENSBGRG00000020918)	SAP25 (ENSBGRG00000021118)	ENSBGRG00000016293	AGFG2 (ENSBGRG00000016314)	NYAP1 (ENSBGRG00000016464)	TSC22D4 (ENSBGRG00000016571)	SPACDR (ENSBGRG00000016646)	PPP1R35 (ENSBGRG00000016697)	MEPCE (ENSBGRG00000016739)	ZCWPW1 (ENSBGRG00000016860)	ENSBGRG00000017335	ENSBGRG00000017711
American bison	MODERN SPECIES	3016					ACHE (ENSBBBG00000022341)	UFSP1 (ENSBBBG00000022344)	SRRT (ENSBBBG00000022394)	SLC12A9 (ENSBBBG00000022498)	EPHB4 (ENSBBBG00000022706)	ZAN (ENSBBBG00000022771)	EPO (ENSBBBG00000008677)	POP7 (ENSBBBG00000022794)	GIGYF1 (ENSBBBG00000022910)	GNB2 (ENSBBBG00000022955)	ACTL6B (ENSBBBG00000022970)	TFR2 (ENSBBBG00000022992) ##22	ENSBBBG00000022998	PCOLCE (ENSBBBG00000023061)	FBXO24 (ENSBBBG00000023094)	ENSBBBG00000023107	SAP25 (ENSBBBG00000023146)	ENSBBBG00000023155	AGFG2 (ENSBBBG00000000422)	TSC22D4 (ENSBBBG00000000396)	SPACDR (ENSBBBG00000000393)	PPP1R35 (ENSBBBG00000000385)	MEPCE (ENSBBBG00000000368)	ZCWPW1 (ENSBBBG00000000347)	ENSBBBG00000000330	STAG3 (ENSBBBG00000023339)	GPC2 (ENSBBBG00000023357)
Siberian musk deer	MODERN SPECIES	1230				ACHE (ENSMMSG00000011195)	UFSP1 (ENSMMSG00000011247)	SRRT (ENSMMSG00000011257)	TRIP6 (ENSMMSG00000011338)	SLC12A9 (ENSMMSG00000011394)	EPHB4 (ENSMMSG00000011464)	ZAN (ENSMMSG00000011569)	EPO (ENSMMSG00000011707)	ENSMMSG00000011740	GIGYF1 (ENSMMSG00000011767)	GNB2 (ENSMMSG00000011898)	ACTL6B (ENSMMSG00000011987)	TFR2 (ENSMMSG00000012054) ##22	MOSPD3 (ENSMMSG00000012226)	PCOLCE (ENSMMSG00000012258)	FBXO24 (ENSMMSG00000012320)	LRCH4 (ENSMMSG00000012445)	ENSMMSG00000012533	ENSMMSG00000012558	AGFG2 (ENSMMSG00000012579)	NYAP1 (ENSMMSG00000012616)	TSC22D4 (ENSMMSG00000012664)	SPACDR (ENSMMSG00000012707)	PPP1R35 (ENSMMSG00000012732)	MEPCE (ENSMMSG00000012759)	ZCWPW1 (ENSMMSG00000012792)	ENSMMSG00000012861	PVRIG (ENSMMSG00000012871)
Yarkand deer	MODERN SPECIES	1	AP1S1 (ENSCHYG00000014618)	SERPINE1 (ENSCHYG00000014707)	TRIM56 (ENSCHYG00000014863)	ACHE (ENSCHYG00000014884)	UFSP1 (ENSCHYG00000015010)	SRRT (ENSCHYG00000015050)	TRIP6 (ENSCHYG00000015241)	SLC12A9 (ENSCHYG00000015360)	EPHB4 (ENSCHYG00000016103)	ZAN (ENSCHYG00000016529)	EPO (ENSCHYG00000017647)	ENSCHYG00000017703	GIGYF1 (ENSCHYG00000017746)	GNB2 (ENSCHYG00000017840)	ACTL6B (ENSCHYG00000017969)	TFR2 (ENSCHYG00000018217) ##22	MOSPD3 (ENSCHYG00000018594)	PCOLCE (ENSCHYG00000018870)	LRCH4 (ENSCHYG00000019028)	FBXO24 (ENSCHYG00000019595)	SAP25 (ENSCHYG00000019887)	ENSCHYG00000019964	AGFG2 (ENSCHYG00000019997)	ENSCHYG00000020288	NYAP1 (ENSCHYG00000020318)	TSC22D4 (ENSCHYG00000020369)	SPACDR (ENSCHYG00000020444)	PPP1R35 (ENSCHYG00000020515)	MEPCE (ENSCHYG00000020573)	ZCWPW1 (ENSCHYG00000020740)	ENSCHYG00000020986
Cetacea	ANCESTRAL SPECIES	3	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00390000010283.k.a.b	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00390000010283.k.a.b	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00390000017745	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936.a	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00390000017745	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936.a	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Narwhal	MODERN SPECIES	299	VGF (ENSMMNG00015008769)	AP1S1 (ENSMMNG00015008777)	SERPINE1 (ENSMMNG00015008788)	TRIM56 (ENSMMNG00015008795)	ACHE (ENSMMNG00015008805)	ENSMMNG00015008818	SRRT (ENSMMNG00015008830)	TRIP6 (ENSMMNG00015008845)	SLC12A9 (ENSMMNG00015008861)	EPHB4 (ENSMMNG00015008898)	EPO (ENSMMNG00015008986)	POP7 (ENSMMNG00015000022)	GIGYF1 (ENSMMNG00015000080)	GNB2 (ENSMMNG00015000129)	ACTL6B (ENSMMNG00015000175)	TFR2 (ENSMMNG00015000233) ##22	MOSPD3 (ENSMMNG00015000309)	PCOLCE (ENSMMNG00015000350)	FBXO24 (ENSMMNG00015000439)	LRCH4 (ENSMMNG00015000576)	SAP25 (ENSMMNG00015000769)	ENSMMNG00015000824	AGFG2 (ENSMMNG00015000860)	NYAP1 (ENSMMNG00015000948)	TSC22D4 (ENSMMNG00015000982)	SPACDR (ENSMMNG00015001010)	PPP1R35 (ENSMMNG00015001026)	MEPCE (ENSMMNG00015001046)	ZCWPW1 (ENSMMNG00015001073)	ENSMMNG00015001137	PVRIG (ENSMMNG00015001158)
Beluga whale	MODERN SPECIES	48	VGF (ENSDLEG00000008089)	AP1S1 (ENSDLEG00000008112)	SERPINE1 (ENSDLEG00000008141)	TRIM56 (ENSDLEG00000008156)	ACHE (ENSDLEG00000008179)	UFSP1 (ENSDLEG00000008191)	SRRT (ENSDLEG00000008212)	TRIP6 (ENSDLEG00000008282)	SLC12A9 (ENSDLEG00000008367)	EPHB4 (ENSDLEG00000008456)	EPO (ENSDLEG00000008840)	POP7 (ENSDLEG00000008907)	GIGYF1 (ENSDLEG00000008935)	GNB2 (ENSDLEG00000009023)	ACTL6B (ENSDLEG00000009111)	TFR2 (ENSDLEG00000009208) ##22	MOSPD3 (ENSDLEG00000009349)	PCOLCE (ENSDLEG00000009361)	FBXO24 (ENSDLEG00000009408)	LRCH4 (ENSDLEG00000009438)	SAP25 (ENSDLEG00000009571)	ENSDLEG00000009656	AGFG2 (ENSDLEG00000009701)	NYAP1 (ENSDLEG00000010098)	TSC22D4 (ENSDLEG00000010137)	CUNH7orf61 (ENSDLEG00000010157)	PPP1R35 (ENSDLEG00000010173)	MEPCE (ENSDLEG00000010194)	ZCWPW1 (ENSDLEG00000010214)	ENSDLEG00000010231	PVRIG (ENSDLEG00000010248)
Vaquita	MODERN SPECIES	6	MOGAT3 (ENSPSNG00000007379)	VGF (ENSPSNG00000007438)	AP1S1 (ENSPSNG00000007459)	SERPINE1 (ENSPSNG00000007516)	TRIM56 (ENSPSNG00000007555)	ACHE (ENSPSNG00000007582)	ENSPSNG00000007629	SRRT (ENSPSNG00000007671)	TRIP6 (ENSPSNG00000007762)	SLC12A9 (ENSPSNG00000007807)	EPHB4 (ENSPSNG00000007900)	EPO (ENSPSNG00000008841)	POP7 (ENSPSNG00000008886)	ENSPSNG00000008910	ACTL6B (ENSPSNG00000008982)	TFR2 (ENSPSNG00000009088) ##22	MOSPD3 (ENSPSNG00000009213)	PCOLCE (ENSPSNG00000009289)	FBXO24 (ENSPSNG00000009440)	LRCH4 (ENSPSNG00000009769)	SAP25 (ENSPSNG00000009939)	ENSPSNG00000010090	AGFG2 (ENSPSNG00000010124)	NYAP1 (ENSPSNG00000010199)	TSC22D4 (ENSPSNG00000010291)	SPACDR (ENSPSNG00000010350)	PPP1R35 (ENSPSNG00000010396)	MEPCE (ENSPSNG00000010451)	ZCWPW1 (ENSPSNG00000010527)	ENSPSNG00000010610	PVRIG (ENSPSNG00000010724)
Dolphin	MODERN SPECIES	1674															ACTL6B (ENSTTRG00000008908)	TFR2 (ENSTTRG00000008905) ##22	MOSPD3 (ENSTTRG00000008904)	PCOLCE (ENSTTRG00000008901)	FBXO24 (ENSTTRG00000008896)	LRCH4 (ENSTTRG00000008894)	ENSTTRG00000008892	ENSTTRG00000008889	AGFG2 (ENSTTRG00000008885)	NYAP1 (ENSTTRG00000008883)	TSC22D4 (ENSTTRG00000008882)	SPACDR (ENSTTRG00000008880)	PPP1R35 (ENSTTRG00000008877)	MEPCE (ENSTTRG00000008873)	ZCWPW1 (ENSTTRG00000008867)	ENSTTRG00000008865	STAG3 (ENSTTRG00000008845)
Sperm whale	MODERN SPECIES	64											EPO (ENSPCTG00005022142)	POP7 (ENSPCTG00005022147)	GIGYF1 (ENSPCTG00005022150)	GNB2 (ENSPCTG00005022157)	ACTL6B (ENSPCTG00005022161)	TFR2 (ENSPCTG00005022171) ##22	ENSPCTG00005022182	PCOLCE (ENSPCTG00005022191)	FBXO24 (ENSPCTG00005022206)	LRCH4 (ENSPCTG00005022228)	ENSPCTG00005022259	SAP25 (ENSPCTG00005022265)	ENSPCTG00005022270
Blue whale	MODERN SPECIES	6	AP1S1 (ENSBMSG00010010846)	SERPINE1 (ENSBMSG00010010867)	TRIM56 (ENSBMSG00010010880)	ACHE (ENSBMSG00010010898)	UFSP1 (ENSBMSG00010010917)	SRRT (ENSBMSG00010010942)	TRIP6 (ENSBMSG00010010964)	SLC12A9 (ENSBMSG00010010981)	EPHB4 (ENSBMSG00010011026)	ZAN (ENSBMSG00010011065)	EPO (ENSBMSG00010011088)	POP7 (ENSBMSG00010011103)	GIGYF1 (ENSBMSG00010011122)	GNB2 (ENSBMSG00010011165)	ACTL6B (ENSBMSG00010011243)	TFR2 (ENSBMSG00010011270) ##22	MOSPD3 (ENSBMSG00010011308)	PCOLCE (ENSBMSG00010011326)	FBXO24 (ENSBMSG00010011373)	LRCH4 (ENSBMSG00010011442)	ENSBMSG00010011498	ENSBMSG00010011509	ENSBMSG00010011524	AGFG2 (ENSBMSG00010011534)	NYAP1 (ENSBMSG00010011557)	ENSBMSG00010011581	TSC22D4 (ENSBMSG00010011588)	PPP1R35 (ENSBMSG00010011595)	MEPCE (ENSBMSG00010011604)	ZCWPW1 (ENSBMSG00010011623)	ENSBMSG00010011668
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Caniformia	ANCESTRAL SPECIES	8	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831
Ursidae	ANCESTRAL SPECIES	3	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000017799
Ursus	ANCESTRAL SPECIES	32				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00390000008831.k	ENSGT00390000017799
American black bear	MODERN SPECIES	6848																TFR2 (ENSUAMG00000028218) ##22	MOSPD3 (ENSUAMG00000028219)	PCOLCE (ENSUAMG00000028220)	FBXO24 (ENSUAMG00000028221)	ENSUAMG00000028222	ENSUAMG00000028223	ENSUAMG00000028225	SAP25 (ENSUAMG00000028227)	ENSUAMG00000028228	AGFG2 (ENSUAMG00000028232)
Polar bear	MODERN SPECIES	212					ACHE (ENSUMAG00000011305)	SRRT (ENSUMAG00000011295)	TRIP6 (ENSUMAG00000011291)	SLC12A9 (ENSUMAG00000011204)	EPHB4 (ENSUMAG00000010929)	ZAN (ENSUMAG00000010906)	EPO (ENSUMAG00000010898)	POP7 (ENSUMAG00000010895)	ENSUMAG00000010890	GNB2 (ENSUMAG00000010850)	ACTL6B (ENSUMAG00000010798)	TFR2 (ENSUMAG00000010779) ##22	MOSPD3 (ENSUMAG00000010773)	PCOLCE (ENSUMAG00000010768)	FBXO24 (ENSUMAG00000010762)	ENSUMAG00000010759	ENSUMAG00000010756	ENSUMAG00000010752	ENSUMAG00000010747	AGFG2 (ENSUMAG00000010741)	NYAP1 (ENSUMAG00000010735)	TSC22D4 (ENSUMAG00000010731)	SPACDR (ENSUMAG00000010728)	PPP1R35 (ENSUMAG00000010726)	MEPCE (ENSUMAG00000010719)	ENSUMAG00000010710	PVRIG (ENSUMAG00000010707)
Giant Panda	MODERN SPECIES	1	AP1S1 (ENSAMEG00000002673)	SERPINE1 (ENSAMEG00000002621)	ENSAMEG00000002584	ACHE (ENSAMEG00000014489)	UFSP1 (ENSAMEG00000030951)	SRRT (ENSAMEG00000014506)	TRIP6 (ENSAMEG00000014537)	SLC12A9 (ENSAMEG00000014543)	EPHB4 (ENSAMEG00000014567)	ENSAMEG00000014680	EPO (ENSAMEG00000014713)	POP7 (ENSAMEG00000014722)	GIGYF1 (ENSAMEG00000014726)	GNB2 (ENSAMEG00000014766)	ACTL6B (ENSAMEG00000014795)	TFR2 (ENSAMEG00000014828) ##22	MOSPD3 (ENSAMEG00000014875)	PCOLCE (ENSAMEG00000014891)	FBXO24 (ENSAMEG00000014922)	LRCH4 (ENSAMEG00000014941)	SAP25 (ENSAMEG00000014992)	ENSAMEG00000014994	AGFG2 (ENSAMEG00000014995)	NYAP1 (ENSAMEG00000015016)	TSC22D4 (ENSAMEG00000024092)	ENSAMEG00000015035	ENSAMEG00000015049	ENSAMEG00000015075	STAG3 (ENSAMEG00000015079)	GPC2 (ENSAMEG00000015203)	GAL3ST4 (ENSAMEG00000015219)
Mustelinae	ANCESTRAL SPECIES	41	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b
American mink	MODERN SPECIES	102	VGF (ENSNVIG00000001794)	AP1S1 (ENSNVIG00000001768)	SERPINE1 (ENSNVIG00000001748)	TRIM56 (ENSNVIG00000001742)	ENSNVIG00000001716	ACHE (ENSNVIG00000001690)	UFSP1 (ENSNVIG00000001686)	SRRT (ENSNVIG00000001594)	TRIP6 (ENSNVIG00000001570)	ENSNVIG00000001548	ZAN (ENSNVIG00000001483)	EPO (ENSNVIG00000001465)	C9JYM0 (ENSNVIG00000001460)	GIGYF1 (ENSNVIG00000001349)	GNB2 (ENSNVIG00000001316)	TFR2 (ENSNVIG00000001228) ##22	MOSPD3 (ENSNVIG00000001204)	PCOLCE (ENSNVIG00000001171)	FBXO24 (ENSNVIG00000001085)	LRCH4 (ENSNVIG00000001043)	SAP25 (ENSNVIG00000000995)	ENSNVIG00000000980	AGFG2 (ENSNVIG00000000961)	NYAP1 (ENSNVIG00000000942)	TSC22D4 (ENSNVIG00000000933)	PPP1R35 (ENSNVIG00000000929)	MEPCE (ENSNVIG00000000913)	ZCWPW1 (ENSNVIG00000000812)	ENSNVIG00000000768	ENSNVIG00000000757	PVRIG (ENSNVIG00000000743)
Canidae	ANCESTRAL SPECIES	3	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.p	ENSGT00390000017799	ENSGT00950000182972.a.b
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.p	ENSGT00390000017799	ENSGT00950000182972.a.b
Dog	MODERN SPECIES	34	SERPINE1 (ENSCAFG00845000607)	TRIM56 (ENSCAFG00845000631)	ENSCAFG00845000644	ENSCAFG00845000663	ACHE (ENSCAFG00845000697)	SRRT (ENSCAFG00845000736)	TRIP6 (ENSCAFG00845000757)	SLC12A9 (ENSCAFG00845000776)	EPHB4 (ENSCAFG00845000816)	ZAN (ENSCAFG00845000904)	EPO (ENSCAFG00845001075)	POP7 (ENSCAFG00845001100)	GIGYF1 (ENSCAFG00845001154)	GNB2 (ENSCAFG00845001262)	ACTL6B (ENSCAFG00845001299)	TFR2 (ENSCAFG00845001347) ##22	MOSPD3 (ENSCAFG00845001385)	PCOLCE (ENSCAFG00845001417)	FBXO24 (ENSCAFG00845001486)	LRCH4 (ENSCAFG00845001581)	ENSCAFG00845001643	SAP25 (ENSCAFG00845001710)	AGFG2 (ENSCAFG00845001812)	TSC22D4 (ENSCAFG00845001911)	PPP1R35 (ENSCAFG00845001962)	MEPCE (ENSCAFG00845001979)	ZCWPW1 (ENSCAFG00845002111)	ENSCAFG00845002176	PVRIG (ENSCAFG00845002201)	STAG3 (ENSCAFG00845002250)	GPC2 (ENSCAFG00845002364)
Dingo	MODERN SPECIES	351	AP1S1 (ENSCAFG00020013311)	SERPINE1 (ENSCAFG00020013314)	TRIM56 (ENSCAFG00020013319)	ENSCAFG00020013322	ACHE (ENSCAFG00020013326)	UFSP1 (ENSCAFG00020013330)	SRRT (ENSCAFG00020013358)	TRIP6 (ENSCAFG00020013808)	SLC12A9 (ENSCAFG00020013810)	EPHB4 (ENSCAFG00020013816)	EPO (ENSCAFG00020013854)	POP7 (ENSCAFG00020013863)	GIGYF1 (ENSCAFG00020013875)	GNB2 (ENSCAFG00020013892)	ACTL6B (ENSCAFG00020013896)	TFR2 (ENSCAFG00020013942) ##22	MOSPD3 (ENSCAFG00020013956)	PCOLCE (ENSCAFG00020013959)	FBXO24 (ENSCAFG00020013963)	LRCH4 (ENSCAFG00020013974)	SAP25 (ENSCAFG00020013983)	AGFG2 (ENSCAFG00020013987)	NYAP1 (ENSCAFG00020014003)	TSC22D4 (ENSCAFG00020014009)	SPACDR (ENSCAFG00020014011)	PPP1R35 (ENSCAFG00020014015)	MEPCE (ENSCAFG00020014018)	ZCWPW1 (ENSCAFG00020014025)	ENSCAFG00020014050	PVRIG (ENSCAFG00020014054)	STAG3 (ENSCAFG00020014060)
Red fox	MODERN SPECIES	164	TRIM56 (ENSVVUG00000023601)	ENSVVUG00000023598 ##10	ENSVVUG00000023594	ACHE (ENSVVUG00000023577)	UFSP1 (ENSVVUG00000023576)	SRRT (ENSVVUG00000023572)	TRIP6 (ENSVVUG00000023541)	SLC12A9 (ENSVVUG00000023538)	EPHB4 (ENSVVUG00000023535)	ZAN (ENSVVUG00000023487)	EPO (ENSVVUG00000023476)	POP7 (ENSVVUG00000023472)	GIGYF1 (ENSVVUG00000023468)	GNB2 (ENSVVUG00000023466)	ACTL6B (ENSVVUG00000023465)	TFR2 (ENSVVUG00000023458) ##22	MOSPD3 (ENSVVUG00000023456)	PCOLCE (ENSVVUG00000023454)	FBXO24 (ENSVVUG00000023446)	LRCH4 (ENSVVUG00000023441)	ENSVVUG00000023438	ENSVVUG00000023437	AGFG2 (ENSVVUG00000023431)	NYAP1 (ENSVVUG00000023428)	TSC22D4 (ENSVVUG00000023425)	PPP1R35 (ENSVVUG00000023420)	MEPCE (ENSVVUG00000023418)	ZCWPW1 (ENSVVUG00000023416)	ENSVVUG00000023411	PVRIG (ENSVVUG00000023410)	STAG3 (ENSVVUG00000023385)
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.r	ENSGT00390000017799
Panthera	ANCESTRAL SPECIES	27	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.q	ENSGT00390000017799
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.q	ENSGT00390000017799
lion	MODERN SPECIES	16	AP1S1 (ENSPLOG00000014212)	SERPINE1 (ENSPLOG00000014320)	TRIM56 (ENSPLOG00000014365)	ENSPLOG00000014392	ACHE (ENSPLOG00000014528)	UFSP1 (ENSPLOG00000014635)	SRRT (ENSPLOG00000014684)	TRIP6 (ENSPLOG00000014782)	SLC12A9 (ENSPLOG00000014856)	EPHB4 (ENSPLOG00000015073)	EPO (ENSPLOG00000017157)	POP7 (ENSPLOG00000017212)	GIGYF1 (ENSPLOG00000017252)	GNB2 (ENSPLOG00000017453)	ACTL6B (ENSPLOG00000017604)	TFR2 (ENSPLOG00000017769) ##22	MOSPD3 (ENSPLOG00000017973)	PCOLCE (ENSPLOG00000018092)	FBXO24 (ENSPLOG00000018295)	LRCH4 (ENSPLOG00000018576)	SAP25 (ENSPLOG00000018690)	ENSPLOG00000018875	AGFG2 (ENSPLOG00000018927)	NYAP1 (ENSPLOG00000019016)	TSC22D4 (ENSPLOG00000019105)	PPP1R35 (ENSPLOG00000019170)	MEPCE (ENSPLOG00000019216)	ZCWPW1 (ENSPLOG00000019294)	ENSPLOG00000019466	LAMTOR4 (ENSPLOG00000019568)	TRAPPC14 (ENSPLOG00000019666)
leopard	MODERN SPECIES	91				ACHE (ENSPPRG00000004893)	UFSP1 (ENSPPRG00000017880)	SRRT (ENSPPRG00000009557)	TRIP6 (ENSPPRG00000011591)	SLC12A9 (ENSPPRG00000013378)	EPHB4 (ENSPPRG00000021827)	ZAN (ENSPPRG00000006749)	EPO (ENSPPRG00000007032)	POP7 (ENSPPRG00000018408)	GIGYF1 (ENSPPRG00000007671)	GNB2 (ENSPPRG00000008843)	ACTL6B (ENSPPRG00000009571)	TFR2 (ENSPPRG00000010375) ##22	MOSPD3 (ENSPPRG00000011173)	PCOLCE (ENSPPRG00000011700)	FBXO24 (ENSPPRG00000013715)	LRCH4 (ENSPPRG00000021572)	SAP25 (ENSPPRG00000022993)	ENSPPRG00000000263	AGFG2 (ENSPPRG00000000417)	NYAP1 (ENSPPRG00000001207)	TSC22D4 (ENSPPRG00000001465)	SPACDR (ENSPPRG00000001575)	PPP1R35 (ENSPPRG00000001898)	MEPCE (ENSPPRG00000002350)	ZCWPW1 (ENSPPRG00000004075)	PVRIG (ENSPPRG00000004947)	STAG3 (ENSPPRG00000011185)
Tiger	MODERN SPECIES	32	MOGAT3 (ENSPTIG00000010531)	ENSPTIG00000011687	AP1S1 (ENSPTIG00000012055)	SERPINE1 (ENSPTIG00000012367)	ACHE (ENSPTIG00000013081)	UFSP1 (ENSPTIG00000005645)	SRRT (ENSPTIG00000014355)	TRIP6 (ENSPTIG00000014845)	SLC12A9 (ENSPTIG00000015559)	EPHB4 (ENSPTIG00000017511)	EPO (ENSPTIG00000008214)	POP7 (ENSPTIG00000005807)	GIGYF1 (ENSPTIG00000008645)	GNB2 (ENSPTIG00000009832)	ACTL6B (ENSPTIG00000011607)	TFR2 (ENSPTIG00000011926) ##22	MOSPD3 (ENSPTIG00000012732)	PCOLCE (ENSPTIG00000013565)	FBXO24 (ENSPTIG00000014049)	LRCH4 (ENSPTIG00000014734)	ENSPTIG00000015108	AGFG2 (ENSPTIG00000015361)	NYAP1 (ENSPTIG00000015607)	TSC22D4 (ENSPTIG00000015782)	SPACDR (ENSPTIG00000016019)	ENSPTIG00000016100	ZCWPW1 (ENSPTIG00000016293)	PVRIG (ENSPTIG00000017352)	STAG3 (ENSPTIG00000017542)	GPC2 (ENSPTIG00000018544)	GAL3ST4 (ENSPTIG00000019146)
Cat	MODERN SPECIES	247	SERPINE1 (ENSFCAG00000005795)	TRIM56 (ENSFCAG00000018978)	ENSFCAG00000052766	ACHE (ENSFCAG00000023546)	UFSP1 (ENSFCAG00000037835)	SRRT (ENSFCAG00000006855)	TRIP6 (ENSFCAG00000006854)	SLC12A9 (ENSFCAG00000006853)	EPHB4 (ENSFCAG00000006852)	ZAN (ENSFCAG00000006851)	EPO (ENSFCAG00000006850)	POP7 (ENSFCAG00000006849)	GIGYF1 (ENSFCAG00000006848)	GNB2 (ENSFCAG00000023877)	ACTL6B (ENSFCAG00000006846)	TFR2 (ENSFCAG00000006845) ##22	MOSPD3 (ENSFCAG00000006844)	PCOLCE (ENSFCAG00000006843)	FBXO24 (ENSFCAG00000006842)	LRCH4 (ENSFCAG00000000219)	IRS3 (ENSFCAG00000026820)	AGFG2 (ENSFCAG00000006841)	NYAP1 (ENSFCAG00000010806)	TSC22D4 (ENSFCAG00000010805)	PPP1R35 (ENSFCAG00000043281)	MEPCE (ENSFCAG00000010803)	ZCWPW1 (ENSFCAG00000010802)	ENSFCAG00000038978	PVRIG (ENSFCAG00000022272)	STAG3 (ENSFCAG00000010798)	GPC2 (ENSFCAG00000010794)
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Equus	ANCESTRAL SPECIES	22	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.u.a	ENSGT00390000017799
Donkey	MODERN SPECIES	5	VGF (ENSEASG00005027802)	ENSEASG00005016926	SERPINE1 (ENSEASG00005016930)	TRIM56 (ENSEASG00005037715)	ACHE (ENSEASG00005016950)	SRRT (ENSEASG00005016956)	TRIP6 (ENSEASG00005016963)	SLC12A9 (ENSEASG00005016970)	EPHB4 (ENSEASG00005016974)	ZAN (ENSEASG00005016981)	EPO (ENSEASG00005016991)	POP7 (ENSEASG00005032763)	GIGYF1 (ENSEASG00005016996)	GNB2 (ENSEASG00005017004)	ACTL6B (ENSEASG00005017006)	TFR2 (ENSEASG00005017013) ##22	MOSPD3 (ENSEASG00005017021)	PCOLCE (ENSEASG00005017024)	FBXO24 (ENSEASG00005017028)	LRCH4 (ENSEASG00005017031)	ENSEASG00005017040	ENSEASG00005017041	AGFG2 (ENSEASG00005017044)	NYAP1 (ENSEASG00005017050)	TSC22D4 (ENSEASG00005017059)	PPP1R35 (ENSEASG00005031042)	MEPCE (ENSEASG00005017074)	ZCWPW1 (ENSEASG00005017081)	ENSEASG00005017091	ENSEASG00005017094	STAG3 (ENSEASG00005017210)
Horse	MODERN SPECIES	4	AP1S1 (ENSECAG00000010983)	SERPINE1 (ENSECAG00000019781)	TRIM56 (ENSECAG00000019517)	ACHE (ENSECAG00000006898)	ENSECAG00000006380	SRRT (ENSECAG00000012292)	TRIP6 (ENSECAG00000002142)	SLC12A9 (ENSECAG00000017955)	EPHB4 (ENSECAG00000010632)	ZAN (ENSECAG00000016429)	EPO (ENSECAG00000010733)	POP7 (ENSECAG00000010383)	GIGYF1 (ENSECAG00000017541)	GNB2 (ENSECAG00000017221)	ACTL6B (ENSECAG00000014917)	TFR2 (ENSECAG00000024726) ##22	MOSPD3 (ENSECAG00000023837)	PCOLCE (ENSECAG00000021766)	FBXO24 (ENSECAG00000015517)	LRCH4 (ENSECAG00000023227)	SAP25 (ENSECAG00000023213)	IRS3 (ENSECAG00000022553)	AGFG2 (ENSECAG00000016244)	NYAP1 (ENSECAG00000012983)	TSC22D4 (ENSECAG00000008387)	SPACDR (ENSECAG00000052769)	MEPCE (ENSECAG00000024124)	ZCWPW1 (ENSECAG00000022363)	ENSECAG00000033857	PVRIG (ENSECAG00000020068)	STAG3 (ENSECAG00000012736)
Chiroptera	ANCESTRAL SPECIES	37	ENSGT00940000160621	ENSGT00940000162489	ENSGT01090000261072	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Microchiroptera	ANCESTRAL SPECIES	39	ENSGT00940000160621	ENSGT00940000162489	ENSGT01090000261072	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Greater horseshoe bat	MODERN SPECIES	25	AP1S1 (ENSRFEG00010006234)	SERPINE1 (ENSRFEG00010006196)	TRIM56 (ENSRFEG00010006178)	ENSRFEG00010006137	ACHE (ENSRFEG00010004015)	UFSP1 (ENSRFEG00010004001)	SRRT (ENSRFEG00010003984)	TRIP6 (ENSRFEG00010003967)	SLC12A9 (ENSRFEG00010003949)	EPHB4 (ENSRFEG00010003932)	EPO (ENSRFEG00010003914)	POP7 (ENSRFEG00010003903)	GIGYF1 (ENSRFEG00010003889)	GNB2 (ENSRFEG00010003869)	ACTL6B (ENSRFEG00010003834)	TFR2 (ENSRFEG00010003787) ##22	MOSPD3 (ENSRFEG00010003767)	PCOLCE (ENSRFEG00010003758)	FBXO24 (ENSRFEG00010003722)	LRCH4 (ENSRFEG00010003648)	SAP25 (ENSRFEG00010003608)	ENSRFEG00010003589	AGFG2 (ENSRFEG00010003565)	NYAP1 (ENSRFEG00010003530)	TSC22D4 (ENSRFEG00010003495)	PPP1R35 (ENSRFEG00010003455)	MEPCE (ENSRFEG00010003432)	ZCWPW1 (ENSRFEG00010003404)	ENSRFEG00010003372	ENSRFEG00010003343	STAG3 (ENSRFEG00010003326)
Microbat	MODERN SPECIES	937					ACHE (ENSMLUG00000029214)	SRRT (ENSMLUG00000009975)	TRIP6 (ENSMLUG00000009946)	SLC12A9 (ENSMLUG00000009927)	EPHB4 (ENSMLUG00000010142)	ENSMLUG00000028156	EPO (ENSMLUG00000010118)	POP7 (ENSMLUG00000010110)	GIGYF1 (ENSMLUG00000006788)	GNB2 (ENSMLUG00000006764)	ACTL6B (ENSMLUG00000010076)	TFR2 (ENSMLUG00000010027) ##22	MOSPD3 (ENSMLUG00000010017)	PCOLCE (ENSMLUG00000009985)	FBXO24 (ENSMLUG00000009958)	LRCH4 (ENSMLUG00000009911)	ENSMLUG00000009823	AGFG2 (ENSMLUG00000009758)	NYAP1 (ENSMLUG00000009744)	TSC22D4 (ENSMLUG00000009729)	ENSMLUG00000030019	ENSMLUG00000009706	MEPCE (ENSMLUG00000009678)	ZCWPW1 (ENSMLUG00000009644)	STAG3 (ENSMLUG00000017433)	GPC2 (ENSMLUG00000017431)	GAL3ST4 (ENSMLUG00000028836)
Megabat	MODERN SPECIES	2939										EPHB4 (ENSPVAG00000012027)	ZAN (ENSPVAG00000012021)	EPO (ENSPVAG00000012020)	GIGYF1 (ENSPVAG00000012019)	GNB2 (ENSPVAG00000012018)	ACTL6B (ENSPVAG00000012016)	TFR2 (ENSPVAG00000012012) ##22	MOSPD3 (ENSPVAG00000012011)	PCOLCE (ENSPVAG00000012009)	FBXO24 (ENSPVAG00000012006)	LRCH4 (ENSPVAG00000012004)	ENSPVAG00000012003	ENSPVAG00000012002	AGFG2 (ENSPVAG00000012001)	NYAP1 (ENSPVAG00000012000)	TSC22D4 (ENSPVAG00000011999)	ENSPVAG00000011998	PPP1R35 (ENSPVAG00000011997)	MEPCE (ENSPVAG00000011996)	ZCWPW1 (ENSPVAG00000011995)	ENSPVAG00000011993	STAG3 (ENSPVAG00000011992)
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Primates	ANCESTRAL SPECIES	11	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123.a	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899.c	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00990000211684
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123.a	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899.c	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00990000211684
Pan	ANCESTRAL SPECIES	13	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123.b	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899.c	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a.a	ENSGT00940000163799.b
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	634									ENSPTRG00000046579	ENSPTRG00000052512	ENSPTRG00000050969	ENSPTRG00000047460	ENSPTRG00000044127	ENSPTRG00000052136	ENSPTRG00000046117	ENSPTRG00000049338 ##22	MOSPD3 (ENSPTRG00000046456)	ENSPTRG00000045249	ENSPTRG00000050885	ENSPTRG00000049956	ENSPTRG00000050117	ENSPTRG00000050530	ENSPTRG00000043360	ENSPTRG00000050286	ENSPTRG00000051610	ENSPTRG00000043299	ENSPTRG00000050679	ENSPTRG00000050515	ENSPTRG00000049949	ENSPTRG00000019484	ENSPTRG00000046101
Chimpanzee	MODERN SPECIES	20	AP1S1 (ENSPTRG00000019520)	SERPINE1 (ENSPTRG00000019519)	TRIM56 (ENSPTRG00000019518)	ACHE (ENSPTRG00000019514)	UFSP1 (ENSPTRG00000042577)	SRRT (ENSPTRG00000019511)	TRIP6 (ENSPTRG00000019510)	SLC12A9 (ENSPTRG00000019509)	EPHB4 (ENSPTRG00000019507)	ENSPTRG00000045801	EPO (ENSPTRG00000019505)	POP7 (ENSPTRG00000019504)	GIGYF1 (ENSPTRG00000019503)	GNB2 (ENSPTRG00000019501)	ACTL6B (ENSPTRG00000019500)	TFR2 (ENSPTRG00000019499) ##22	MOSPD3 (ENSPTRG00000019498)	PCOLCE (ENSPTRG00000019497)	FBXO24 (ENSPTRG00000019496)	LRCH4 (ENSPTRG00000028467)	SAP25 (ENSPTRG00000019495)	AGFG2 (ENSPTRG00000019493)	NYAP1 (ENSPTRG00000019491)	TSC22D4 (ENSPTRG00000019490)	SPACDR (ENSPTRG00000019489)	PPP1R35 (ENSPTRG00000019488)	MEPCE (ENSPTRG00000019487)	ZCWPW1 (ENSPTRG00000019486)	ENSPTRG00000050294	ENSPTRG00000046172	PILRA (ENSPTRG00000019485)
Bonobo	MODERN SPECIES	20	SERPINE1 (ENSPPAG00000043881)	TRIM56 (ENSPPAG00000007746)	ENSPPAG00000031642	ACHE (ENSPPAG00000034898)	UFSP1 (ENSPPAG00000001810)	SRRT (ENSPPAG00000041090)	TRIP6 (ENSPPAG00000031817)	SLC12A9 (ENSPPAG00000043841)	EPHB4 (ENSPPAG00000034203)	ENSPPAG00000038269	EPO (ENSPPAG00000042182)	POP7 (ENSPPAG00000015339)	GIGYF1 (ENSPPAG00000029734)	GNB2 (ENSPPAG00000029711)	ACTL6B (ENSPPAG00000034816)	TFR2 (ENSPPAG00000032823) ##22	ENSPPAG00000043356	PCOLCE (ENSPPAG00000040383)	FBXO24 (ENSPPAG00000039899)	LRCH4 (ENSPPAG00000025042)	ENSPPAG00000015202	SAP25 (ENSPPAG00000028852)	AGFG2 (ENSPPAG00000022303)	NYAP1 (ENSPPAG00000012593)	TSC22D4 (ENSPPAG00000043478)	SPACDR (ENSPPAG00000043014)	PPP1R35 (ENSPPAG00000042243)	MEPCE (ENSPPAG00000031579)	ZCWPW1 (ENSPPAG00000036953)	PILRA (ENSPPAG00000031626)	ENSPPAG00000029218
Human	MODERN SPECIES	19	MUC17 (ENSG00000169876)	MUC12 (ENSG00000205277)	MUC3A (ENSG00000169894)	ACHE (ENSG00000087085)	UFSP1 (ENSG00000176125)	SRRT (ENSG00000087087)	TRIP6 (ENSG00000087077)	SLC12A9 (ENSG00000146828)	EPHB4 (ENSG00000196411)	ZAN (ENSG00000146839)	EPO (ENSG00000130427)	POP7 (ENSG00000172336)	GIGYF1 (ENSG00000146830)	GNB2 (ENSG00000172354)	ACTL6B (ENSG00000077080)	TFR2 (ENSG00000106327) ##22	MOSPD3 (ENSG00000106330)	PCOLCE (ENSG00000106333)	FBXO24 (ENSG00000106336)	LRCH4 (ENSG00000077454)	SAP25 (ENSG00000205307)	AGFG2 (ENSG00000106351)	NYAP1 (ENSG00000166924)	ENSG00000289760	TSC22D4 (ENSG00000166925)	SPACDR (ENSG00000185955)	PPP1R35 (ENSG00000160813)	MEPCE (ENSG00000146834)	ZCWPW1 (ENSG00000078487)	ENSG00000289690	PILRA (ENSG00000085514)
Gorilla	MODERN SPECIES	20	TRIM56 (ENSGGOG00000000406)	ACHE (ENSGGOG00000001511)	UFSP1 (ENSGGOG00000027913)	SRRT (ENSGGOG00000001508)	TRIP6 (ENSGGOG00000001505)	SLC12A9 (ENSGGOG00000001502)	EPHB4 (ENSGGOG00000015248)	ENSGGOG00000040553	ENSGGOG00000043149	ENSGGOG00000040087	ENSGGOG00000041226	POP7 (ENSGGOG00000016492)	GIGYF1 (ENSGGOG00000005811)	GNB2 (ENSGGOG00000005805)	ACTL6B (ENSGGOG00000016502)	TFR2 (ENSGGOG00000012162) ##22	MOSPD3 (ENSGGOG00000010749)	PCOLCE (ENSGGOG00000010740)	FBXO24 (ENSGGOG00000023939)	LRCH4 (ENSGGOG00000013712)	SAP25 (ENSGGOG00000013708)	AGFG2 (ENSGGOG00000013688)	NYAP1 (ENSGGOG00000002803)	TSC22D4 (ENSGGOG00000028315)	SPACDR (ENSGGOG00000000932)	PPP1R35 (ENSGGOG00000005377)	MEPCE (ENSGGOG00000005371)	ZCWPW1 (ENSGGOG00000005363)	PILRA (ENSGGOG00000005357)	ENSGGOG00000026523	STAG3 (ENSGGOG00000016923)
Orangutan	MODERN SPECIES	20	ENSPPYG00000037390	TRIM56 (ENSPPYG00000017437)	MUC3A (ENSPPYG00000030266)	ACHE (ENSPPYG00000017434)	ENSPPYG00000037915	SRRT (ENSPPYG00000017432)	TRIP6 (ENSPPYG00000017431)	SLC12A9 (ENSPPYG00000017430)	EPHB4 (ENSPPYG00000017429)	ZAN (ENSPPYG00000017428)	EPO (ENSPPYG00000017427)	POP7 (ENSPPYG00000017426)	GIGYF1 (ENSPPYG00000017425)	ENSPPYG00000017424	ACTL6B (ENSPPYG00000017423)	TFR2 (ENSPPYG00000017422) ##22	ENSPPYG00000017421	PCOLCE (ENSPPYG00000017420)	FBXO24 (ENSPPYG00000017419)	LRCH4 (ENSPPYG00000017418)	ENSPPYG00000017415	AGFG2 (ENSPPYG00000017417)	NYAP1 (ENSPPYG00000017416)	TSC22D4 (ENSPPYG00000017414)	SPACDR (ENSPPYG00000017413)	PPP1R35 (ENSPPYG00000017412)	MEPCE (ENSPPYG00000017411)	ZCWPW1 (ENSPPYG00000017410)	PILRA (ENSPPYG00000017409)	PILRB (ENSPPYG00000017408)	ENSPPYG00000036436
Gibbon	MODERN SPECIES	7	TRIM56 (ENSNLEG00000029001)	ENSNLEG00000033728	ENSNLEG00000008166	ACHE (ENSNLEG00000012016)	UFSP1 (ENSNLEG00000018876)	SRRT (ENSNLEG00000011987)	TRIP6 (ENSNLEG00000035253)	SLC12A9 (ENSNLEG00000011983)	EPHB4 (ENSNLEG00000011945)	ZAN (ENSNLEG00000033565)	EPO (ENSNLEG00000011941)	POP7 (ENSNLEG00000011939)	GIGYF1 (ENSNLEG00000011929)	GNB2 (ENSNLEG00000011920)	ACTL6B (ENSNLEG00000011889)	TFR2 (ENSNLEG00000011885) ##22	PCOLCE (ENSNLEG00000011817)	ENSNLEG00000011802	LRCH4 (ENSNLEG00000011789)	SAP25 (ENSNLEG00000031380)	AGFG2 (ENSNLEG00000011757)	NYAP1 (ENSNLEG00000011748)	SPACDR (ENSNLEG00000011743)	PPP1R35 (ENSNLEG00000011736)	MEPCE (ENSNLEG00000011734)	ZCWPW1 (ENSNLEG00000011728)	PILRA (ENSNLEG00000011714)	ENSNLEG00000033660	ENSNLEG00000008690	STAG3 (ENSNLEG00000011569)	GAL3ST4 (ENSNLEG00000011567)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799
Vervet Monkey	MODERN SPECIES	20	MUC12 (ENSCSAG00000018005)	MUC3A (ENSCSAG00000018002)	ENSCSAG00000017999	ACHE (ENSCSAG00000017998)	SRRT (ENSCSAG00000017996)	UFSP1 (ENSCSAG00000019487)	TRIP6 (ENSCSAG00000017994)	SLC12A9 (ENSCSAG00000017990)	EPHB4 (ENSCSAG00000017988)	ZAN (ENSCSAG00000017978)	EPO (ENSCSAG00000017939)	POP7 (ENSCSAG00000017937)	GIGYF1 (ENSCSAG00000017934)	GNB2 (ENSCSAG00000017932)	ACTL6B (ENSCSAG00000017930)	TFR2 (ENSCSAG00000017928) ##22	MOSPD3 (ENSCSAG00000017925)	PCOLCE (ENSCSAG00000017924)	FBXO24 (ENSCSAG00000017922)	LRCH4 (ENSCSAG00000017918)	SAP25 (ENSCSAG00000017917)	AGFG2 (ENSCSAG00000017914)	NYAP1 (ENSCSAG00000017905)	TSC22D4 (ENSCSAG00000017902)	SPACDR (ENSCSAG00000017898)	PPP1R35 (ENSCSAG00000017896)	MEPCE (ENSCSAG00000017894)	ZCWPW1 (ENSCSAG00000017892)	PILRA (ENSCSAG00000017890)	PVRIG (ENSCSAG00000017887)	STAG3 (ENSCSAG00000017886)
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00390000008783.k.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799
Cercopithecinae_d	ANCESTRAL SPECIES	75	ENSGT00940000165469	ENSGT00940000154419.a.b	ENSGT00390000008783.k.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799
Drill	MODERN SPECIES	930		MUC3A (ENSMLEG00000014565)	ENSMLEG00000035539	ACHE (ENSMLEG00000012390)	UFSP1 (ENSMLEG00000010638)	SRRT (ENSMLEG00000029479)	TRIP6 (ENSMLEG00000042224)	SLC12A9 (ENSMLEG00000039297)	EPHB4 (ENSMLEG00000042091)	ZAN (ENSMLEG00000025583)	EPO (ENSMLEG00000030361)	POP7 (ENSMLEG00000027597)	GIGYF1 (ENSMLEG00000030515)	GNB2 (ENSMLEG00000036025)	ACTL6B (ENSMLEG00000031514)	TFR2 (ENSMLEG00000044255) ##22	MOSPD3 (ENSMLEG00000041217)	PCOLCE (ENSMLEG00000037592)	LRCH4 (ENSMLEG00000008121)	FBXO24 (ENSMLEG00000041985)	ENSMLEG00000039537	SAP25 (ENSMLEG00000017738)	AGFG2 (ENSMLEG00000030396)	NYAP1 (ENSMLEG00000043181)	TSC22D4 (ENSMLEG00000008489)	SPACDR (ENSMLEG00000039527)	MEPCE (ENSMLEG00000043318)	ZCWPW1 (ENSMLEG00000028696)	PILRA (ENSMLEG00000044058)	PILRB (ENSMLEG00000007163)	PVRIG (ENSMLEG00000025335)
Sooty mangabey	MODERN SPECIES	630	ENSCATG00000034376	MUC3A (ENSCATG00000043755)	ENSCATG00000041730	ACHE (ENSCATG00000044129)	UFSP1 (ENSCATG00000012501)	SRRT (ENSCATG00000036306)	TRIP6 (ENSCATG00000042684)	SLC12A9 (ENSCATG00000034871)	EPHB4 (ENSCATG00000045373)	ZAN (ENSCATG00000034805)	EPO (ENSCATG00000038115)	POP7 (ENSCATG00000010371)	GIGYF1 (ENSCATG00000032522)	GNB2 (ENSCATG00000039234)	ACTL6B (ENSCATG00000041643)	TFR2 (ENSCATG00000029552) ##22	MOSPD3 (ENSCATG00000019847)	PCOLCE (ENSCATG00000039149)	FBXO24 (ENSCATG00000039777)	LRCH4 (ENSCATG00000044123)	SAP25 (ENSCATG00000033843)	AGFG2 (ENSCATG00000009433)	NYAP1 (ENSCATG00000030172)	TSC22D4 (ENSCATG00000032301)	SPACDR (ENSCATG00000045016)	PPP1R35 (ENSCATG00000043614)	MEPCE (ENSCATG00000027605)	ZCWPW1 (ENSCATG00000040902)	PILRB (ENSCATG00000044399)	PILRA (ENSCATG00000030910)	PVRIG (ENSCATG00000034669)
Olive baboon	MODERN SPECIES	14	AP1S1 (ENSPANG00000018838)	SERPINE1 (ENSPANG00000021648)	TRIM56 (ENSPANG00000022402)	ENSPANG00000029875	ACHE (ENSPANG00000010756)	UFSP1 (ENSPANG00000051255)	SRRT (ENSPANG00000020763)	TRIP6 (ENSPANG00000000649)	SLC12A9 (ENSPANG00000007493)	EPHB4 (ENSPANG00000015854)	EPO (ENSPANG00000021927)	POP7 (ENSPANG00000006196)	GIGYF1 (ENSPANG00000018440)	GNB2 (ENSPANG00000018442)	ACTL6B (ENSPANG00000018332)	TFR2 (ENSPANG00000018333) ##22	MOSPD3 (ENSPANG00000031105)	PCOLCE (ENSPANG00000018315)	FBXO24 (ENSPANG00000018316)	LRCH4 (ENSPANG00000018144)	SAP25 (ENSPANG00000018109)	AGFG2 (ENSPANG00000018111)	NYAP1 (ENSPANG00000026456)	TSC22D4 (ENSPANG00000026457)	SPACDR (ENSPANG00000026465)	PPP1R35 (ENSPANG00000021926)	MEPCE (ENSPANG00000022874)	ZCWPW1 (ENSPANG00000019546)	PILRA (ENSPANG00000025452)	PILRB (ENSPANG00000031519)	PVRIG (ENSPANG00000022229)
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000154419.a.a	ENSGT00940000165469	ENSGT00390000008783.k.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b.a	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000165469	ENSGT01030000240153	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b.a	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.a.a.b.a.b.d.a.a.a	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000048383	ENSMFAG00000046140	ACHE (ENSMFAG00000037867)	SRRT (ENSMFAG00000033745)	ENSMFAG00000047956	TRIP6 (ENSMFAG00000035576)	SLC12A9 (ENSMFAG00000035511)	EPHB4 (ENSMFAG00000035528)	ZAN (ENSMFAG00000039018)	EPO (ENSMFAG00000044414)	POP7 (ENSMFAG00000027783)	GIGYF1 (ENSMFAG00000033735)	GNB2 (ENSMFAG00000039171)	ENSMFAG00000065758	ACTL6B (ENSMFAG00000038744)	TFR2 (ENSMFAG00000000760) ##22	MOSPD3 (ENSMFAG00000044802)	PCOLCE (ENSMFAG00000038601)	FBXO24 (ENSMFAG00000034514)	SAP25 (ENSMFAG00000042005)	LRCH4 (ENSMFAG00000034297)	AGFG2 (ENSMFAG00000035777)	ENSMFAG00000057144	NYAP1 (ENSMFAG00000039580)	TSC22D4 (ENSMFAG00000040847)	PPP1R35 (ENSMFAG00000040018)	MEPCE (ENSMFAG00000003007)	ZCWPW1 (ENSMFAG00000044114)	PILRA (ENSMFAG00000000650)	ENSMFAG00000041336	STAG3 (ENSMFAG00000036085)
Rhesus	MODERN SPECIES	13	ENSMMUG00000052734	ENSMMUG00000006081	ENSMMUG00000063274	MUC3A (ENSMMUG00000061514)	ACHE (ENSMMUG00000058568)	SRRT (ENSMMUG00000021255)	TRIP6 (ENSMMUG00000021252)	SLC12A9 (ENSMMUG00000021248)	EPHB4 (ENSMMUG00000007375)	EPO (ENSMMUG00000022863)	POP7 (ENSMMUG00000008581)	GIGYF1 (ENSMMUG00000004082)	GNB2 (ENSMMUG00000004080)	ENSMMUG00000063216	ACTL6B (ENSMMUG00000007461)	TFR2 (ENSMMUG00000002950) ##22	MOSPD3 (ENSMMUG00000002949)	PCOLCE (ENSMMUG00000002947)	FBXO24 (ENSMMUG00000015309)	LRCH4 (ENSMMUG00000015311)	SAP25 (ENSMMUG00000046847)	AGFG2 (ENSMMUG00000048302)	NYAP1 (ENSMMUG00000010463)	TSC22D4 (ENSMMUG00000041566)	ENSMMUG00000062357	PPP1R35 (ENSMMUG00000012728)	MEPCE (ENSMMUG00000012724)	ZCWPW1 (ENSMMUG00000012720)	PILRA (ENSMMUG00000043070)	PVRIG (ENSMMUG00000047872)	STAG3 (ENSMMUG00000018405)
Pig-tailed macaque	MODERN SPECIES	80		ENSMNEG00000041983	ENSMNEG00000037162	ENSMNEG00000032631	ACHE (ENSMNEG00000040326)	SRRT (ENSMNEG00000041864)	UFSP1 (ENSMNEG00000023371)	TRIP6 (ENSMNEG00000039884)	SLC12A9 (ENSMNEG00000035601)	EPHB4 (ENSMNEG00000029951)	ZAN (ENSMNEG00000033779)	EPO (ENSMNEG00000040212)	GIGYF1 (ENSMNEG00000042728)	GNB2 (ENSMNEG00000028982)	ACTL6B (ENSMNEG00000035680)	TFR2 (ENSMNEG00000040655) ##22	MOSPD3 (ENSMNEG00000027355)	PCOLCE (ENSMNEG00000041119)	FBXO24 (ENSMNEG00000032852)	LRCH4 (ENSMNEG00000029829)	SAP25 (ENSMNEG00000032763)	AGFG2 (ENSMNEG00000033441)	NYAP1 (ENSMNEG00000031829)	TSC22D4 (ENSMNEG00000038789)	SPACDR (ENSMNEG00000027949)	PPP1R35 (ENSMNEG00000028097)	MEPCE (ENSMNEG00000038460)	ZCWPW1 (ENSMNEG00000040539)	PILRA (ENSMNEG00000033169)	PILRB (ENSMNEG00000041668)	PVRIG (ENSMNEG00000033100)
Rhinopithecus	ANCESTRAL SPECIES	46				ENSGT00390000008783.k.b	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00910000148156	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.l	ENSGT00940000161400.k	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A.c	ENSGT00560000077278.a	ENSGT00940000163799.a
Golden snub-nosed monkey	MODERN SPECIES	2033				ENSRROG00000033097	ACHE (ENSRROG00000011945)	SRRT (ENSRROG00000030622)	TRIP6 (ENSRROG00000031454)	SLC12A9 (ENSRROG00000029189)	EPHB4 (ENSRROG00000044335)	ZAN (ENSRROG00000044176)	EPO (ENSRROG00000045285)	POP7 (ENSRROG00000028543)	GIGYF1 (ENSRROG00000037892)	GNB2 (ENSRROG00000043585)	ACTL6B (ENSRROG00000036394)	TFR2 (ENSRROG00000000044) ##22	MOSPD3 (ENSRROG00000041508)	PCOLCE (ENSRROG00000038027)	FBXO24 (ENSRROG00000034369)	LRCH4 (ENSRROG00000043300)	SAP25 (ENSRROG00000032342)	AGFG2 (ENSRROG00000042095)	NYAP1 (ENSRROG00000036831)	TSC22D4 (ENSRROG00000043001)	SPACDR (ENSRROG00000031497)	PPP1R35 (ENSRROG00000029973)	MEPCE (ENSRROG00000031225)	ZCWPW1 (ENSRROG00000028354)	PILRA (ENSRROG00000045175)	PILRB (ENSRROG00000037504)	PVRIG (ENSRROG00000037613)
Black snub-nosed monkey	MODERN SPECIES	814					ACHE (ENSRBIG00000042452)	SRRT (ENSRBIG00000035718)	TRIP6 (ENSRBIG00000028350)	SLC12A9 (ENSRBIG00000032830)	EPHB4 (ENSRBIG00000010766)	ZAN (ENSRBIG00000031435)	EPO (ENSRBIG00000044276)	POP7 (ENSRBIG00000002671)	GIGYF1 (ENSRBIG00000035889)	GNB2 (ENSRBIG00000032468)	ACTL6B (ENSRBIG00000030446)	TFR2 (ENSRBIG00000039815) ##22	MOSPD3 (ENSRBIG00000028825)	PCOLCE (ENSRBIG00000031146)	FBXO24 (ENSRBIG00000042257)	LRCH4 (ENSRBIG00000041522)	ENSRBIG00000033067	SAP25 (ENSRBIG00000024532)	AGFG2 (ENSRBIG00000041108)	NYAP1 (ENSRBIG00000013787)	ENSRBIG00000035188	SPACDR (ENSRBIG00000024588)	PPP1R35 (ENSRBIG00000024622)	MEPCE (ENSRBIG00000027050)	ZCWPW1 (ENSRBIG00000034150)	PILRA (ENSRBIG00000012235)	PILRB (ENSRBIG00000034130)
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b
Cebidae	ANCESTRAL SPECIES	24	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00390000017745	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b
Capuchin	MODERN SPECIES	82	AP1S1 (ENSCCAG00000000838)	SERPINE1 (ENSCCAG00000027891)	ENSCCAG00000007480	ACHE (ENSCCAG00000009910)	SRRT (ENSCCAG00000015877)	TRIP6 (ENSCCAG00000036886)	SLC12A9 (ENSCCAG00000026691)	EPHB4 (ENSCCAG00000027801)	ZAN (ENSCCAG00000012876)	ENSCCAG00000035173	EPO (ENSCCAG00000033333)	POP7 (ENSCCAG00000008898)	GIGYF1 (ENSCCAG00000014412)	GNB2 (ENSCCAG00000029891)	ACTL6B (ENSCCAG00000024049)	TFR2 (ENSCCAG00000025180) ##22	MOSPD3 (ENSCCAG00000034234)	PCOLCE (ENSCCAG00000037186)	FBXO24 (ENSCCAG00000034715)	LRCH4 (ENSCCAG00000034659)	ENSCCAG00000014355	ENSCCAG00000010146	AGFG2 (ENSCCAG00000029704)	NYAP1 (ENSCCAG00000022801)	TSC22D4 (ENSCCAG00000037737)	C7orf61 (ENSCCAG00000033696)	ENSCCAG00000012964	MEPCE (ENSCCAG00000028766)	ZCWPW1 (ENSCCAG00000037503)	ENSCCAG00000021027	PVRIG (ENSCCAG00000026096)
Bolivian squirrel monkey	MODERN SPECIES	104	VGF (ENSSBOG00000030983)	AP1S1 (ENSSBOG00000033608)	SERPINE1 (ENSSBOG00000027844)	TRIM56 (ENSSBOG00000022470)	ACHE (ENSSBOG00000030837)	SRRT (ENSSBOG00000033570)	TRIP6 (ENSSBOG00000035870)	SLC12A9 (ENSSBOG00000031244)	EPHB4 (ENSSBOG00000033071)	ZAN (ENSSBOG00000032041)	EPO (ENSSBOG00000021864)	POP7 (ENSSBOG00000005173)	GIGYF1 (ENSSBOG00000031114)	GNB2 (ENSSBOG00000026191)	ACTL6B (ENSSBOG00000003118)	TFR2 (ENSSBOG00000032774) ##22	MOSPD3 (ENSSBOG00000025292)	PCOLCE (ENSSBOG00000025920)	FBXO24 (ENSSBOG00000029465)	LRCH4 (ENSSBOG00000012173)	SAP25 (ENSSBOG00000035430)	AGFG2 (ENSSBOG00000035315)	NYAP1 (ENSSBOG00000011911)	TSC22D4 (ENSSBOG00000028981)	SPACDR (ENSSBOG00000030037)	PPP1R35 (ENSSBOG00000036036)	MEPCE (ENSSBOG00000011382)	ZCWPW1 (ENSSBOG00000030772)	ENSSBOG00000036253	PVRIG (ENSSBOG00000034075)	STAG3 (ENSSBOG00000027085)
Marmoset	MODERN SPECIES	11	VGF (ENSCJAG00000074993)	AP1S1 (ENSCJAG00000015968)	SERPINE1 (ENSCJAG00000015954)	TRIM56 (ENSCJAG00000015951)	ACHE (ENSCJAG00000014906)	UFSP1 (ENSCJAG00000054818)	SRRT (ENSCJAG00000014917)	TRIP6 (ENSCJAG00000014944)	SLC12A9 (ENSCJAG00000014963)	EPHB4 (ENSCJAG00000014974)	EPO (ENSCJAG00000015048)	POP7 (ENSCJAG00000015056)	GIGYF1 (ENSCJAG00000015057)	GNB2 (ENSCJAG00000015074)	ACTL6B (ENSCJAG00000015106)	TFR2 (ENSCJAG00000015136) ##22	MOSPD3 (ENSCJAG00000041075)	PCOLCE (ENSCJAG00000015201)	FBXO24 (ENSCJAG00000015213)	ENSCJAG00000083711	SAP25 (ENSCJAG00000015273)	AGFG2 (ENSCJAG00000015278)	NYAP1 (ENSCJAG00000015307)	TSC22D4 (ENSCJAG00000015328)	PPP1R35 (ENSCJAG00000015345)	MEPCE (ENSCJAG00000015348)	ZCWPW1 (ENSCJAG00000015363)	ENSCJAG00000015373	PVRIG (ENSCJAG00000015383)	STAG3 (ENSCJAG00000015392)	GPC2 (ENSCJAG00000015439)
Mas night monkey	MODERN SPECIES	551						ACHE (ENSANAG00000035123)	SRRT (ENSANAG00000031718)	TRIP6 (ENSANAG00000032917)	SLC12A9 (ENSANAG00000030651)	EPHB4 (ENSANAG00000028005)	EPO (ENSANAG00000031142)	POP7 (ENSANAG00000019054)	GIGYF1 (ENSANAG00000033343)	GNB2 (ENSANAG00000024187)	ACTL6B (ENSANAG00000032333)	TFR2 (ENSANAG00000030010) ##22	MOSPD3 (ENSANAG00000027443)	PCOLCE (ENSANAG00000037132)	FBXO24 (ENSANAG00000034628)	LRCH4 (ENSANAG00000036001)	SAP25 (ENSANAG00000026948)	AGFG2 (ENSANAG00000036276)	NYAP1 (ENSANAG00000028466)	TSC22D4 (ENSANAG00000029644)	SPACDR (ENSANAG00000021058)	PPP1R35 (ENSANAG00000026372)	MEPCE (ENSANAG00000035127)	ZCWPW1 (ENSANAG00000030162)	ENSANAG00000029010	PVRIG (ENSANAG00000035281)	STAG3 (ENSANAG00000027937)
Tarsier	MODERN SPECIES	1976															ACTL6B (ENSTSYG00000006134)	TFR2 (ENSTSYG00000026867) ##22	MOSPD3 (ENSTSYG00000036744)	PCOLCE (ENSTSYG00000029146)	FBXO24 (ENSTSYG00000014633)	LRCH4 (ENSTSYG00000029845)
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Mouse lemur	MODERN SPECIES	8	AP1S1 (ENSMICG00000005406)	SERPINE1 (ENSMICG00000046603)	TRIM56 (ENSMICG00000037286)	ENSMICG00000045596	ACHE (ENSMICG00000034304)	SRRT (ENSMICG00000009471)	TRIP6 (ENSMICG00000009465)	SLC12A9 (ENSMICG00000009453)	EPHB4 (ENSMICG00000009440)	ZAN (ENSMICG00000009407)	EPO (ENSMICG00000009402)	POP7 (ENSMICG00000009398)	GIGYF1 (ENSMICG00000009384)	GNB2 (ENSMICG00000009371)	ACTL6B (ENSMICG00000009362)	TFR2 (ENSMICG00000009350) ##22	MOSPD3 (ENSMICG00000009344)	PCOLCE (ENSMICG00000009333)	FBXO24 (ENSMICG00000009325)	LRCH4 (ENSMICG00000012568)	SAP25 (ENSMICG00000012542)	AGFG2 (ENSMICG00000042437)	NYAP1 (ENSMICG00000012488)	TSC22D4 (ENSMICG00000037589)	PPP1R35 (ENSMICG00000006438)	MEPCE (ENSMICG00000030166)	ZCWPW1 (ENSMICG00000003360)	ENSMICG00000034845	ENSMICG00000042823	ENSMICG00000028493	PVRIG (ENSMICG00000041865)
Lemuriformes_a	ANCESTRAL SPECIES	16				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Coquerels sifaka	MODERN SPECIES	155					ACHE (ENSPCOG00000020101)	SRRT (ENSPCOG00000025751)	TRIP6 (ENSPCOG00000009196)	SLC12A9 (ENSPCOG00000028375)	EPHB4 (ENSPCOG00000022099)	ZAN (ENSPCOG00000014097)	EPO (ENSPCOG00000008063)	POP7 (ENSPCOG00000009302)	GIGYF1 (ENSPCOG00000022650)	GNB2 (ENSPCOG00000013524)	ACTL6B (ENSPCOG00000019888)	TFR2 (ENSPCOG00000024219) ##22	MOSPD3 (ENSPCOG00000027444)	PCOLCE (ENSPCOG00000026063)	FBXO24 (ENSPCOG00000019946)	LRCH4 (ENSPCOG00000001960)	SAP25 (ENSPCOG00000027656)	AGFG2 (ENSPCOG00000007663)	NYAP1 (ENSPCOG00000018803)	TSC22D4 (ENSPCOG00000025299)	SPACDR (ENSPCOG00000028301)	PPP1R35 (ENSPCOG00000012554)	MEPCE (ENSPCOG00000020884)	ENSPCOG00000016495	ENSPCOG00000023657	PVRIG (ENSPCOG00000028251)	STAG3 (ENSPCOG00000023625)
Greater bamboo lemur	MODERN SPECIES	2643																TFR2 (ENSPSMG00000004571) ##22	MOSPD3 (ENSPSMG00000004597)
Bushbaby	MODERN SPECIES	257		ENSOGAG00000003627	ENSOGAG00000027904	ACHE (ENSOGAG00000017244)	UFSP1 (ENSOGAG00000017243)	SRRT (ENSOGAG00000017242)	TRIP6 (ENSOGAG00000013688)	SLC12A9 (ENSOGAG00000013681)	EPHB4 (ENSOGAG00000009355)	ENSOGAG00000009344	EPO (ENSOGAG00000024564)	POP7 (ENSOGAG00000009340)	GIGYF1 (ENSOGAG00000026678)	GNB2 (ENSOGAG00000015133)	ACTL6B (ENSOGAG00000005639)	TFR2 (ENSOGAG00000003381) ##22	MOSPD3 (ENSOGAG00000029348)	PCOLCE (ENSOGAG00000031809)	FBXO24 (ENSOGAG00000030485)	LRCH4 (ENSOGAG00000010670)	ENSOGAG00000010677	AGFG2 (ENSOGAG00000010688)	NYAP1 (ENSOGAG00000027476)	TSC22D4 (ENSOGAG00000011020)	SPACDR (ENSOGAG00000011019)	PPP1R35 (ENSOGAG00000030437)	MEPCE (ENSOGAG00000034770)	ZCWPW1 (ENSOGAG00000011012)	ENSOGAG00000011009	ENSOGAG00000026054	PVRIG (ENSOGAG00000026172)
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Glires	ANCESTRAL SPECIES	11	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000166113	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a
Rodentia	ANCESTRAL SPECIES	11	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT01030000235136	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b
Naked mole-rat female	MODERN SPECIES		FIS1 (ENSHGLG00000018382)	CLDN15 (ENSHGLG00000015207)	ZNHIT1 (ENSHGLG00000017595)	PLOD3 (ENSHGLG00000016800)	ENSHGLG00000016287	ENSHGLG00000014847	VGF (ENSHGLG00000045649)	SERPINE1 (ENSHGLG00000015425)	ENSHGLG00000048870	TRIP6 (ENSHGLG00000038737)	SLC12A9 (ENSHGLG00000008895)	EPHB4 (ENSHGLG00000007813)	POP7 (ENSHGLG00000035336)	GNB2 (ENSHGLG00000015675)	ACTL6B (ENSHGLG00000014925)	ENSHGLG00000011682 ##22	MOSPD3 (ENSHGLG00000012604)	ENSHGLG00000035720	ENSHGLG00000008144	ENSHGLG00000044649	ENSHGLG00000044122	AGFG2 (ENSHGLG00000006498)	ENSHGLG00000039586	ENSHGLG00000037584	ENSHGLG00000046857	ENSHGLG00000034570	MEPCE (ENSHGLG00000011263)	ZCWPW1 (ENSHGLG00000017181)	ENSHGLG00000014766	ENSHGLG00000005648	GPC2 (ENSHGLG00000006382)
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725
Long-tailed chinchilla	MODERN SPECIES	280				ENSCLAG00000003043	ACHE (ENSCLAG00000003264)	SRRT (ENSCLAG00000007568)	TRIP6 (ENSCLAG00000001804)	SLC12A9 (ENSCLAG00000001948)	EPHB4 (ENSCLAG00000002064)	ZAN (ENSCLAG00000001299)	EPO (ENSCLAG00000001391)	POP7 (ENSCLAG00000001541)	GIGYF1 (ENSCLAG00000001568)	GNB2 (ENSCLAG00000001809)	ACTL6B (ENSCLAG00000001889)	TFR2 (ENSCLAG00000001976) ##22	MOSPD3 (ENSCLAG00000001074)	PCOLCE (ENSCLAG00000001234)	FBXO24 (ENSCLAG00000001324)	LRCH4 (ENSCLAG00000001389)	SAP25 (ENSCLAG00000001506)	AGFG2 (ENSCLAG00000001587)	NYAP1 (ENSCLAG00000002252)	ENSCLAG00000002429	ENSCLAG00000002826	ENSCLAG00000003036	ENSCLAG00000003445	MEPCE (ENSCLAG00000003470)	ZCWPW1 (ENSCLAG00000003676)	STAG3 (ENSCLAG00000004018)	GPC2 (ENSCLAG00000001241)
Degu	MODERN SPECIES	76	SERPINE1 (ENSODEG00000016414)	TRIM56 (ENSODEG00000016293)	ENSODEG00000015770	ENSODEG00000015878	ENSODEG00000020377	ACHE (ENSODEG00000016532)	SRRT (ENSODEG00000016856)	TRIP6 (ENSODEG00000016732)	SLC12A9 (ENSODEG00000016182)	EPHB4 (ENSODEG00000016238)	EPO (ENSODEG00000016349)	POP7 (ENSODEG00000020363)	GIGYF1 (ENSODEG00000016368)	GNB2 (ENSODEG00000016384)	ACTL6B (ENSODEG00000016158)	TFR2 (ENSODEG00000016854) ##22	PCOLCE (ENSODEG00000016650)	FBXO24 (ENSODEG00000016232)	LRCH4 (ENSODEG00000017054)	AGFG2 (ENSODEG00000016582)	NYAP1 (ENSODEG00000016669)	TSC22D4 (ENSODEG00000016398)	PPP1R35 (ENSODEG00000017251)	MEPCE (ENSODEG00000016662)	ENSODEG00000016818	STAG3 (ENSODEG00000017407)	GPC2 (ENSODEG00000016920)	GAL3ST4 (ENSODEG00000017731)	TRAPPC14 (ENSODEG00000016953)	ENSODEG00000016725	ENSODEG00000016889
Guinea pig	MODERN SPECIES	30	SERPINE1 (ENSCPOG00000000174)	TRIM56 (ENSCPOG00000034485)	ENSCPOG00000030234	ENSCPOG00000038634	ACHE (ENSCPOG00000001746)	SRRT (ENSCPOG00000001739)	UFSP1 (ENSCPOG00000001745)	TRIP6 (ENSCPOG00000001737)	SLC12A9 (ENSCPOG00000001735)	EPHB4 (ENSCPOG00000014491)	EPO (ENSCPOG00000021586)	POP7 (ENSCPOG00000005767)	GIGYF1 (ENSCPOG00000013604)	GNB2 (ENSCPOG00000019845)	ACTL6B (ENSCPOG00000005145)	TFR2 (ENSCPOG00000011162) ##22	MOSPD3 (ENSCPOG00000006113)	PCOLCE (ENSCPOG00000025385)	FBXO24 (ENSCPOG00000006109)	LRCH4 (ENSCPOG00000006102)	AGFG2 (ENSCPOG00000006298)	NYAP1 (ENSCPOG00000009913)	TSC22D4 (ENSCPOG00000033476)	MEPCE (ENSCPOG00000015225)	PPP1R35 (ENSCPOG00000032452)	ENSCPOG00000015149	PVRIG (ENSCPOG00000023204)	STAG3 (ENSCPOG00000013372)	GPC2 (ENSCPOG00000025274)	ENSCPOG00000025128	TRAPPC14 (ENSCPOG00000023747)
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Marmotini	ANCESTRAL SPECIES	3	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000168691	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Alpin marmot	MODERN SPECIES	28	ENSMMMG00000011720	ENSMMMG00000011723	ENSMMMG00000011737	ENSMMMG00000011748	ACHE (ENSMMMG00000011756)	UFSP1 (ENSMMMG00000011777)	SRRT (ENSMMMG00000011778)	TRIP6 (ENSMMMG00000011815)	SLC12A9 (ENSMMMG00000011827)	EPHB4 (ENSMMMG00000011848)	EPO (ENSMMMG00000012087)	POP7 (ENSMMMG00000012091)	GIGYF1 (ENSMMMG00000012096)	GNB2 (ENSMMMG00000012132)	ACTL6B (ENSMMMG00000012165)	TFR2 (ENSMMMG00000012187) ##22	MOSPD3 (ENSMMMG00000012218)	PCOLCE (ENSMMMG00000012236)	FBXO24 (ENSMMMG00000012254)	LRCH4 (ENSMMMG00000012293)	SAP25 (ENSMMMG00000012306)	ENSMMMG00000012323	AGFG2 (ENSMMMG00000012331)	NYAP1 (ENSMMMG00000012342)	TSC22D4 (ENSMMMG00000012366)	SPACDR (ENSMMMG00000012379)	PPP1R35 (ENSMMMG00000012381)	MEPCE (ENSMMMG00000012390)	ZCWPW1 (ENSMMMG00000012393)	ENSMMMG00000012423	PVRIG (ENSMMMG00000012426)
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000168691	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Squirrel	MODERN SPECIES	143	TRIM56 (ENSSTOG00000019886)	ENSSTOG00000031943	ENSSTOG00000019617	ENSSTOG00000031100	ACHE (ENSSTOG00000026914)	UFSP1 (ENSSTOG00000028717)	SRRT (ENSSTOG00000013776)	TRIP6 (ENSSTOG00000028136)	SLC12A9 (ENSSTOG00000013755)	EPHB4 (ENSSTOG00000013737)	EPO (ENSSTOG00000013659)	POP7 (ENSSTOG00000030883)	GIGYF1 (ENSSTOG00000024993)	GNB2 (ENSSTOG00000019633)	ACTL6B (ENSSTOG00000013646)	TFR2 (ENSSTOG00000013621) ##22	MOSPD3 (ENSSTOG00000013615)	PCOLCE (ENSSTOG00000019417)	FBXO24 (ENSSTOG00000007715)	LRCH4 (ENSSTOG00000007678)	SAP25 (ENSSTOG00000007653)	ENSSTOG00000024947	AGFG2 (ENSSTOG00000007605)	NYAP1 (ENSSTOG00000024074)	TSC22D4 (ENSSTOG00000030762)	SPACDR (ENSSTOG00000007599)	PPP1R35 (ENSSTOG00000007584)	MEPCE (ENSSTOG00000007568)	ZCWPW1 (ENSSTOG00000007532)	ENSSTOG00000028480	STAG3 (ENSSTOG00000011571)
Arctic ground squirrel	MODERN SPECIES	574		ENSUPAG00010017467	ENSUPAG00010017472	ACHE (ENSUPAG00010017479)	UFSP1 (ENSUPAG00010017487)	SRRT (ENSUPAG00010017492)	TRIP6 (ENSUPAG00010017526)	SLC12A9 (ENSUPAG00010017536)	EPHB4 (ENSUPAG00010017548)	ENSUPAG00010017584	EPO (ENSUPAG00010017614)	POP7 (ENSUPAG00010017628)	GIGYF1 (ENSUPAG00010017634)	GNB2 (ENSUPAG00010017668)	ACTL6B (ENSUPAG00010017680)	TFR2 (ENSUPAG00010017699) ##22	MOSPD3 (ENSUPAG00010017720)	PCOLCE (ENSUPAG00010017727)	FBXO24 (ENSUPAG00010017761)	LRCH4 (ENSUPAG00010017780)	ENSUPAG00010017824	SAP25 (ENSUPAG00010017831)	AGFG2 (ENSUPAG00010017842)	NYAP1 (ENSUPAG00010017895)	TSC22D4 (ENSUPAG00010017932)	SPACDR (ENSUPAG00010017949)	PPP1R35 (ENSUPAG00010017954)	MEPCE (ENSUPAG00010017962)	ZCWPW1 (ENSUPAG00010017970)	ENSUPAG00010018022	PVRIG (ENSUPAG00010018032)
Eurasian red squirrel	MODERN SPECIES	9	SERPINE1 (ENSSVLG00005017728)	TRIM56 (ENSSVLG00005017696)	ENSSVLG00005017593	ACHE (ENSSVLG00005017422)	UFSP1 (ENSSVLG00005017391)	SRRT (ENSSVLG00005017306)	TRIP6 (ENSSVLG00005017267)	SLC12A9 (ENSSVLG00005017109)	EPHB4 (ENSSVLG00005025419)	ZAN (ENSSVLG00005025350)	EPO (ENSSVLG00005025319)	POP7 (ENSSVLG00005025314)	GIGYF1 (ENSSVLG00005025302)	GNB2 (ENSSVLG00005025281)	ACTL6B (ENSSVLG00005025256)	TFR2 (ENSSVLG00005025213) ##22	MOSPD3 (ENSSVLG00005025176)	PCOLCE (ENSSVLG00005025143)	FBXO24 (ENSSVLG00005025042)	LRCH4 (ENSSVLG00005024921)	SAP25 (ENSSVLG00005024872)	ENSSVLG00005024847	AGFG2 (ENSSVLG00005024825)	NYAP1 (ENSSVLG00005024787)	TSC22D4 (ENSSVLG00005024761)	SPACDR (ENSSVLG00005024747)	PPP1R35 (ENSSVLG00005024735)	MEPCE (ENSSVLG00005024712)	ZCWPW1 (ENSSVLG00005024608)	ENSSVLG00005024546	PVRIG (ENSSVLG00005024504)
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Kangaroo rat	MODERN SPECIES	462	Vgf (ENSDORG00000011809)	Ap1s1 (ENSDORG00000011811)	Serpine1 (ENSDORG00000010755)	Trim56 (ENSDORG00000016641)	ENSDORG00000024204	Ache (ENSDORG00000005591)	Srrt (ENSDORG00000005584)	Trip6 (ENSDORG00000005582)	Slc12a9 (ENSDORG00000005580)	Ephb4 (ENSDORG00000007887)	Epo (ENSDORG00000014792)	Pop7 (ENSDORG00000012512)	Gigyf1 (ENSDORG00000016513)	Gnb2 (ENSDORG00000028163)	Actl6b (ENSDORG00000002281)	Tfr2 (ENSDORG00000002261) ##22	ENSDORG00000029885	Pcolce (ENSDORG00000000850)	Fbxo24 (ENSDORG00000000848)	Lrch4 (ENSDORG00000000846)	Agfg2 (ENSDORG00000000836)	Nyap1 (ENSDORG00000023955)	Spacdr (ENSDORG00000012171)	Ppp1r35 (ENSDORG00000005314)	Mepce (ENSDORG00000005311)
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Muroidea	ANCESTRAL SPECIES	40	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x
Prairie vole	MODERN SPECIES	192				Ache (ENSMOCG00000013374)	Ufsp1 (ENSMOCG00000019956)	Srrt (ENSMOCG00000001971)	Trip6 (ENSMOCG00000003473)	Slc12a9 (ENSMOCG00000014835)	Ephb4 (ENSMOCG00000009224)	Zan (ENSMOCG00000018444)	Epo (ENSMOCG00000011118)	Pop7 (ENSMOCG00000013694)	Gigyf1 (ENSMOCG00000002516)	Gnb2 (ENSMOCG00000018267)	Actl6b (ENSMOCG00000007386)	Tfr2 (ENSMOCG00000002423) ##22	Mospd3 (ENSMOCG00000002893)	ENSMOCG00000017218	Fbxo24 (ENSMOCG00000015611)	Lrch4 (ENSMOCG00000005460)	Sap25 (ENSMOCG00000018509)	Irs3 (ENSMOCG00000020293)	Agfg2 (ENSMOCG00000018822)	Nyap1 (ENSMOCG00000016828)	Spacdr (ENSMOCG00000009082)	ENSMOCG00000011038	Ppp1r35 (ENSMOCG00000011197)	Mepce (ENSMOCG00000015013)	Zcwpw1 (ENSMOCG00000007800)	ENSMOCG00000011548	ENSMOCG00000021703
Northern American deer mouse	MODERN SPECIES	15	Trim56 (ENSPEMG00000027942)	ENSPEMG00000014470	Muc3a (ENSPEMG00000012889)	Ache (ENSPEMG00000012349)	Ufsp1 (ENSPEMG00000014023)	Srrt (ENSPEMG00000010834)	Trip6 (ENSPEMG00000009489)	Slc12a9 (ENSPEMG00000008133)	Ephb4 (ENSPEMG00000003881)	Zan (ENSPEMG00000016734)	Epo (ENSPEMG00000011939)	Pop7 (ENSPEMG00000011583)	Gigyf1 (ENSPEMG00000008611)	Gnb2 (ENSPEMG00000007981)	Actl6b (ENSPEMG00000006769)	Tfr2 (ENSPEMG00000001392) ##22	Mospd3 (ENSPEMG00000000348)	Pcolce (ENSPEMG00000000057)	Fbxo24 (ENSPEMG00000017456)	Lrch4 (ENSPEMG00000014965)	Sap25 (ENSPEMG00000012433)	Irs3 (ENSPEMG00000011548)	Agfg2 (ENSPEMG00000010198)	Nyap1 (ENSPEMG00000008104)	Spacdr (ENSPEMG00000005543)	Ppp1r35 (ENSPEMG00000004549)	Mepce (ENSPEMG00000003157)	Zcwpw1 (ENSPEMG00000000504)	ENSPEMG00000019066	ENSPEMG00000025551	ENSPEMG00000027201
Cricetinae	ANCESTRAL SPECIES	27	ENSGT00940000160621	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x
Chinese hamster chok1gshd	MODERN SPECIES	202	Ap1s1 (ENSCGRG00001015982)	Serpine1 (ENSCGRG00001012996)	ENSCGRG00001023911	Ache (ENSCGRG00001000791)	Srrt (ENSCGRG00001001594)	Ufsp1 (ENSCGRG00001008098)	Trip6 (ENSCGRG00001019048)	Slc12a9 (ENSCGRG00001004531)	Ephb4 (ENSCGRG00001021237)	Zan (ENSCGRG00001000780)	Epo (ENSCGRG00001019638)	Pop7 (ENSCGRG00001010593)	Gigyf1 (ENSCGRG00001004356)	Gnb2 (ENSCGRG00001017627)	Actl6b (ENSCGRG00001023904)	Tfr2 (ENSCGRG00001018636) ##22	Mospd3 (ENSCGRG00001015885)	Pcolce (ENSCGRG00001023242)	Fbxo24 (ENSCGRG00001013663)	Lrch4 (ENSCGRG00001022329)	Sap25 (ENSCGRG00001010999)	Irs3 (ENSCGRG00001014601)	Agfg2 (ENSCGRG00001019543)	ENSCGRG00001003398	Nyap1 (ENSCGRG00001019510)	Spacdr (ENSCGRG00001013054)	Ppp1r35 (ENSCGRG00001017270)	Mepce (ENSCGRG00001008844)	Zcwpw1 (ENSCGRG00001015211)	ENSCGRG00001009717	ENSCGRG00001014484
Golden Hamster	MODERN SPECIES	715	Vgf (ENSMAUG00000016152)	Serpine1 (ENSMAUG00000002717)	Trim56 (ENSMAUG00000012814)	ENSMAUG00000018255	Ache (ENSMAUG00000021581)	Srrt (ENSMAUG00000011386)	Trip6 (ENSMAUG00000014707)	Slc12a9 (ENSMAUG00000021467)	Ephb4 (ENSMAUG00000001045)	Zan (ENSMAUG00000003221)	Epo (ENSMAUG00000021556)	Pop7 (ENSMAUG00000015820)	Gigyf1 (ENSMAUG00000017322)	Gnb2 (ENSMAUG00000010760)	Actl6b (ENSMAUG00000008451)	Tfr2 (ENSMAUG00000007323) ##22	Mospd3 (ENSMAUG00000003865)	ENSMAUG00000013870	Fbxo24 (ENSMAUG00000013892)	Lrch4 (ENSMAUG00000011620)	Sap25 (ENSMAUG00000009553)	Irs3 (ENSMAUG00000020870)	Agfg2 (ENSMAUG00000007986)	Nyap1 (ENSMAUG00000002982)	ENSMAUG00000020535	ENSMAUG00000017736	ENSMAUG00000001031	Ppp1r35 (ENSMAUG00000022180)	Mepce (ENSMAUG00000001456)	Zcwpw1 (ENSMAUG00000018839)	ENSMAUG00000018811
Murinae	ANCESTRAL SPECIES	20	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00390000008831.y	ENSGT00390000017799
Mus	ANCESTRAL SPECIES	17	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT01090000260005.a.a.a.a
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00390000008831.y	ENSGT00950000182958.a.b.b.j.a.b.a
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00390000008831.y	ENSGT00950000182958.a.b.b.j.a.b.a
Mouse	MODERN SPECIES	14	Muc3 (ENSMUSG00000037390)	Gm31160 (ENSMUSG00000118522)	Muc3a (ENSMUSG00000094840)	Ache (ENSMUSG00000023328)	Ufsp1 (ENSMUSG00000051502)	Srrt (ENSMUSG00000037364)	Trip6 (ENSMUSG00000023348)	Slc12a9 (ENSMUSG00000037344)	Ephb4 (ENSMUSG00000029710)	Zan (ENSMUSG00000079173)	Epo (ENSMUSG00000029711)	Pop7 (ENSMUSG00000029715)	Gigyf1 (ENSMUSG00000029714)	Gnb2 (ENSMUSG00000029713)	Actl6b (ENSMUSG00000029712)	Tfr2 (ENSMUSG00000029716) ##22	Mospd3 (ENSMUSG00000037221)	Pcolce (ENSMUSG00000029718)	Fbxo24 (ENSMUSG00000089984)	Lrch4 (ENSMUSG00000093445)	Sap25 (ENSMUSG00000079165)	Irs3 (ENSMUSG00000047182)	Agfg2 (ENSMUSG00000029722)	Nyap1 (ENSMUSG00000045348)	Spacdr (ENSMUSG00000029723)	ENSMUSG00000121581	Ppp1r35 (ENSMUSG00000029725)	Mepce (ENSMUSG00000029726)	Zcwpw1 (ENSMUSG00000037108)	Pilra (ENSMUSG00000046245)	Pilrb1 (ENSMUSG00000066684)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000162489	ENSGT00940000154419.a.a	ENSGT00940000154419.a.b	ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT01090000260005.a.a.a.a
spretus	MODERN SPECIES	14	Trim56 (MGP_SPRETEiJ_G0028870)	MGP_SPRETEiJ_G0028871	Muc3a (MGP_SPRETEiJ_G0028872)	Ache (MGP_SPRETEiJ_G0028873)	Ufsp1 (MGP_SPRETEiJ_G0028874)	Srrt (MGP_SPRETEiJ_G0028875)	Trip6 (MGP_SPRETEiJ_G0028876)	Slc12a9 (MGP_SPRETEiJ_G0028877)	Ephb4 (MGP_SPRETEiJ_G0028878)	Zan (MGP_SPRETEiJ_G0028879)	Epo (MGP_SPRETEiJ_G0028880)	Pop7 (MGP_SPRETEiJ_G0028881)	MGP_SPRETEiJ_G0028882	Gnb2 (MGP_SPRETEiJ_G0028883)	Actl6b (MGP_SPRETEiJ_G0028884)	Tfr2 (MGP_SPRETEiJ_G0028885) ##22	Mospd3 (MGP_SPRETEiJ_G0028886)	Pcolce (MGP_SPRETEiJ_G0028887)	Fbxo24 (MGP_SPRETEiJ_G0028888)	MGP_SPRETEiJ_G0028889	MGP_SPRETEiJ_G0028890	Sap25 (MGP_SPRETEiJ_G0028891)	Irs3 (MGP_SPRETEiJ_G0028892)	Agfg2 (MGP_SPRETEiJ_G0028893)	Nyap1 (MGP_SPRETEiJ_G0028894)	Spacdr (MGP_SPRETEiJ_G0028895)	Ppp1r35 (MGP_SPRETEiJ_G0028896)	Mepce (MGP_SPRETEiJ_G0028897)	MGP_SPRETEiJ_G0028898	MGP_SPRETEiJ_G0028899	Cyp3a13 (MGP_SPRETEiJ_G0028901)
Steppe mouse	MODERN SPECIES	149	ENSMSIG00000010208	ENSMSIG00000010154	ENSMSIG00000010135	Ache (ENSMSIG00000010105)	Ufsp1 (ENSMSIG00000010096)	Srrt (ENSMSIG00000010003)	Trip6 (ENSMSIG00000009968)	Slc12a9 (ENSMSIG00000009900)	Ephb4 (ENSMSIG00000009713)	Zan (ENSMSIG00000008617)	Epo (ENSMSIG00000008562)	Pop7 (ENSMSIG00000008543)	Gigyf1 (ENSMSIG00000008422)	Gnb2 (ENSMSIG00000008390)	Actl6b (ENSMSIG00000008340)	Tfr2 (ENSMSIG00000008240) ##22	ENSMSIG00000008208	ENSMSIG00000008182	Pcolce (ENSMSIG00000008123)	ENSMSIG00000008104	Fbxo24 (ENSMSIG00000008054)	Lrch4 (ENSMSIG00000007869)	Sap25 (ENSMSIG00000007819)	Irs3 (ENSMSIG00000007795)	Agfg2 (ENSMSIG00000007745)	Spacdr (ENSMSIG00000007669)	Ppp1r35 (ENSMSIG00000007659)	Mepce (ENSMSIG00000007627)	Zcwpw1 (ENSMSIG00000007568)
Ryukyu mouse	MODERN SPECIES	14	MGP_CAROLIEiJ_G0027865	Trim56 (MGP_CAROLIEiJ_G0027866)	MGP_CAROLIEiJ_G0027867	Ache (MGP_CAROLIEiJ_G0027868)	Ufsp1 (MGP_CAROLIEiJ_G0027869)	Srrt (MGP_CAROLIEiJ_G0027870)	Trip6 (MGP_CAROLIEiJ_G0027871)	Slc12a9 (MGP_CAROLIEiJ_G0027872)	Ephb4 (MGP_CAROLIEiJ_G0027873)	Zan (MGP_CAROLIEiJ_G0027874)	Epo (MGP_CAROLIEiJ_G0027875)	Pop7 (MGP_CAROLIEiJ_G0027876)	MGP_CAROLIEiJ_G0027877	Gnb2 (MGP_CAROLIEiJ_G0027878)	Actl6b (MGP_CAROLIEiJ_G0027879)	Tfr2 (MGP_CAROLIEiJ_G0027880) ##22	Mospd3 (MGP_CAROLIEiJ_G0027881)	Pcolce (MGP_CAROLIEiJ_G0027882)	Fbxo24 (MGP_CAROLIEiJ_G0027883)	MGP_CAROLIEiJ_G0027884	MGP_CAROLIEiJ_G0027885	Sap25 (MGP_CAROLIEiJ_G0027886)	Irs3 (MGP_CAROLIEiJ_G0027887)	Agfg2 (MGP_CAROLIEiJ_G0027888)	Nyap1 (MGP_CAROLIEiJ_G0027889)	Spacdr (MGP_CAROLIEiJ_G0027890)	Ppp1r35 (MGP_CAROLIEiJ_G0027891)	Mepce (MGP_CAROLIEiJ_G0027892)	Zcwpw1 (MGP_CAROLIEiJ_G0027893)	Pilra (MGP_CAROLIEiJ_G0027894)	MGP_CAROLIEiJ_G0027895
Rat	MODERN SPECIES	3	Serpine1 (ENSRNOG00000001414)	Trim56 (ENSRNOG00000071001)	ENSRNOG00000070500	Muc3a (ENSRNOG00000068186)	Ache (ENSRNOG00000050841)	Srrt (ENSRNOG00000048277)	Trip6 (ENSRNOG00000048580)	Slc12a9 (ENSRNOG00000048487)	Ephb4 (ENSRNOG00000045952)	Zan (ENSRNOG00000067638)	Epo (ENSRNOG00000001412)	Pop7 (ENSRNOG00000025310)	Gigyf1 (ENSRNOG00000001410)	Gnb2 (ENSRNOG00000001409)	Actl6b (ENSRNOG00000001408)	Tfr2 (ENSRNOG00000001407) ##22	Mospd3 (ENSRNOG00000001396)	Pcolce (ENSRNOG00000025001)	Fbxo24 (ENSRNOG00000024922)	Lrch4 (ENSRNOG00000001402)	Sap25 (ENSRNOG00000066351)	Irs3 (ENSRNOG00000001389)	Agfg2 (ENSRNOG00000001404)	Nyap1 (ENSRNOG00000024641)	Tsc22d4 (ENSRNOG00000050805)	Mepce (ENSRNOG00000001387)	Zcwpw1 (ENSRNOG00000052199)	LOC100910497 (ENSRNOG00000050059)	LOC120095906 (ENSRNOG00000063533)	RGD1561730 (ENSRNOG00000069357)	ENSRNOG00000066432
Upper Galilee mountains blind mole rat	MODERN SPECIES	779	Serpine1 (ENSNGAG00000013020)	Trim56 (ENSNGAG00000013564)	ENSNGAG00000003056	ENSNGAG00000011323	Ache (ENSNGAG00000007886)	Srrt (ENSNGAG00000023715)	Trip6 (ENSNGAG00000021180)	Slc12a9 (ENSNGAG00000010253)	Ephb4 (ENSNGAG00000018259)	ENSNGAG00000010261	Epo (ENSNGAG00000019436)	Pop7 (ENSNGAG00000021630)	Gigyf1 (ENSNGAG00000015108)	Gnb2 (ENSNGAG00000021433)	Actl6b (ENSNGAG00000022489)	Tfr2 (ENSNGAG00000011356) ##22	ENSNGAG00000014033	ENSNGAG00000015360	Fbxo24 (ENSNGAG00000023515)	Lrch4 (ENSNGAG00000002133)	Sap25 (ENSNGAG00000016739)	Irs3 (ENSNGAG00000024122)	Agfg2 (ENSNGAG00000022134)	Nyap1 (ENSNGAG00000020824)	Spacdr (ENSNGAG00000022367)	ENSNGAG00000010352	ENSNGAG00000019954	Ppp1r35 (ENSNGAG00000021631)	Mepce (ENSNGAG00000007098)	Zcwpw1 (ENSNGAG00000023314)	ENSNGAG00000024168
Lagomorpha	ANCESTRAL SPECIES	54									ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000166113	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831
Pika	MODERN SPECIES	2003									EPHB4 (ENSOPRG00000015286)	ENSOPRG00000015204	EPO (ENSOPRG00000015189)	POP7 (ENSOPRG00000015185)	GIGYF1 (ENSOPRG00000015150)	GNB2 (ENSOPRG00000015131)	ACTL6B (ENSOPRG00000015108)	TFR2 (ENSOPRG00000015081) ##22	MOSPD3 (ENSOPRG00000015075)	PCOLCE (ENSOPRG00000015052)	FBXO24 (ENSOPRG00000015011)	LRCH4 (ENSOPRG00000014973)	ENSOPRG00000014920	ENSOPRG00000014898	AGFG2 (ENSOPRG00000014876)	TSC22D4 (ENSOPRG00000014852)	SPACDR (ENSOPRG00000014838)	ENSOPRG00000014828	MEPCE (ENSOPRG00000014811)	ZCWPW1 (ENSOPRG00000014795)	ENSOPRG00000014777
Atlantogenata	ANCESTRAL SPECIES	21				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a
Afrotheria	ANCESTRAL SPECIES	103				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a
Afrotheria_a	ANCESTRAL SPECIES	103				ENSGT00940000157637.b	ENSGT00940000162936	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Elephant	MODERN SPECIES	111					ACHE (ENSLAFG00000007735)	SRRT (ENSLAFG00000007725)	TRIP6 (ENSLAFG00000029512)	SLC12A9 (ENSLAFG00000013210)	EPHB4 (ENSLAFG00000022144)	ZAN (ENSLAFG00000011248)	EPO (ENSLAFG00000027108)	POP7 (ENSLAFG00000030032)	GIGYF1 (ENSLAFG00000017009)	GNB2 (ENSLAFG00000017004)	ACTL6B (ENSLAFG00000031032)	TFR2 (ENSLAFG00000016993) ##22	MOSPD3 (ENSLAFG00000016990)	PCOLCE (ENSLAFG00000016981)	FBXO24 (ENSLAFG00000028748)	LRCH4 (ENSLAFG00000028782)	ENSLAFG00000030856	ENSLAFG00000029940	AGFG2 (ENSLAFG00000016974)	NYAP1 (ENSLAFG00000021541)	TSC22D4 (ENSLAFG00000022080)	PPP1R35 (ENSLAFG00000026540)	MEPCE (ENSLAFG00000012347)	ZCWPW1 (ENSLAFG00000026355)	ENSLAFG00000028176	PVRIG (ENSLAFG00000031886)	STAG3 (ENSLAFG00000014010)
Hyrax	MODERN SPECIES	688													GIGYF1 (ENSPCAG00000006576)	GNB2 (ENSPCAG00000006526)	ACTL6B (ENSPCAG00000006466)	TFR2 (ENSPCAG00000006362) ##22
Tenrec	MODERN SPECIES	946																TFR2 (ENSETEG00000010558) ##22	MOSPD3 (ENSETEG00000010557)
Xenarthra	ANCESTRAL SPECIES	72									ENSGT00940000160057	ENSGT00940000156850.a.a	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000162123	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00390000007899	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799
Armadillo	MODERN SPECIES	1447									EPHB4 (ENSDNOG00000024461)	ZAN (ENSDNOG00000032028)	EPO (ENSDNOG00000010249)	POP7 (ENSDNOG00000031207)	GIGYF1 (ENSDNOG00000002606)	GNB2 (ENSDNOG00000002207)	ACTL6B (ENSDNOG00000035063)	TFR2 (ENSDNOG00000037338) ##22	MOSPD3 (ENSDNOG00000046202)	PCOLCE (ENSDNOG00000015060)	FBXO24 (ENSDNOG00000031108)	LRCH4 (ENSDNOG00000000096)	ENSDNOG00000000095	ENSDNOG00000036281	AGFG2 (ENSDNOG00000039748)	NYAP1 (ENSDNOG00000049504)	TSC22D4 (ENSDNOG00000010944)	ENSDNOG00000040221	PPP1R35 (ENSDNOG00000002599)	ENSDNOG00000002596	ZCWPW1 (ENSDNOG00000002593)	ENSDNOG00000031608	ENSDNOG00000041837
Marsupialia	ANCESTRAL SPECIES	22	ENSGT00390000017745	ENSGT00970000193372.a.b.a.a	ENSGT00970000193372.a.b.a.b	ENSGT00970000193372.a.b.b	ENSGT00940000160621	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053
Marsupialia_b	ANCESTRAL SPECIES	25	ENSGT01030000234582.f.b.g	ENSGT00970000193372.a.b.b	ENSGT00390000017745	ENSGT00970000193372.a.b.a.a	ENSGT00940000160621	ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053
Diprotodontia	ANCESTRAL SPECIES	78						ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053
Diprotodontia_a	ANCESTRAL SPECIES	73						ENSGT00940000157637.b	ENSGT00390000005492	ENSGT00940000154273.b	ENSGT00940000159400	ENSGT00940000160057	ENSGT00390000017226	ENSGT00510000048483	ENSGT00940000159845	ENSGT01000000214413.b.b	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00940000159264	ENSGT00390000017455	ENSGT00940000161668	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053
koala	MODERN SPECIES	366					ENSPCIG00000005376	ACHE (ENSPCIG00000000827)	SRRT (ENSPCIG00000000816)	TRIP6 (ENSPCIG00000000802)	SLC12A9 (ENSPCIG00000000789)	EPHB4 (ENSPCIG00000000760)	EPO (ENSPCIG00000000534)	POP7 (ENSPCIG00000000517)	GIGYF1 (ENSPCIG00000000501)	GNB2 (ENSPCIG00000000484)	ACTL6B (ENSPCIG00000000450)	TFR2 (ENSPCIG00000000430) ##22	PCOLCE (ENSPCIG00000000406)	FBXO24 (ENSPCIG00000000390)	LRCH4 (ENSPCIG00000000332)	ENSPCIG00000000301	AGFG2 (ENSPCIG00000000212)	NYAP1 (ENSPCIG00000000186)	TSC22D4 (ENSPCIG00000000142)	ENSPCIG00000012287	MEPCE (ENSPCIG00000012285)	ENSPCIG00000012277	STAG3 (ENSPCIG00000031260)	GPC2 (ENSPCIG00000012268)	GAL3ST4 (ENSPCIG00000012267)	TRAPPC14 (ENSPCIG00000012266)	LAMTOR4 (ENSPCIG00000012264)
Common wonbat	MODERN SPECIES	301					ACHE (ENSVURG00010001246)	SRRT (ENSVURG00010001135)	TRIP6 (ENSVURG00010001101)	SLC12A9 (ENSVURG00010001072)	EPHB4 (ENSVURG00010000827)	EPO (ENSVURG00010000767)	ENSVURG00010000736	POP7 (ENSVURG00010000728)	GIGYF1 (ENSVURG00010000702)	GNB2 (ENSVURG00010000668)	ACTL6B (ENSVURG00010000628)	TFR2 (ENSVURG00010000607) ##22	PCOLCE (ENSVURG00010000578)	FBXO24 (ENSVURG00010000469)	LRCH4 (ENSVURG00010000378)	ENSVURG00010000361	ENSVURG00010000348	AGFG2 (ENSVURG00010000332)	ENSVURG00010000323	ENSVURG00010000305	ENSVURG00010000288	ENSVURG00010000267	CNPY4 (ENSVURG00010000253)	TAF6 (ENSVURG00010000237)	AP4M1 (ENSVURG00010000165)	MCM7 (ENSVURG00010000088)	COPS6 (ENSVURG00010019994)
Wallaby	MODERN SPECIES	3															ACTL6B (ENSMEUG00000016393)	TFR2 (ENSMEUG00000016373) ##22	PCOLCE (ENSMEUG00000016355)	FBXO24 (ENSMEUG00000016346)	LRCH4 (ENSMEUG00000016317)
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000024969	ZNHIT1 (ENSSHAG00000001394)	PLOD3 (ENSSHAG00000001739)	MOGAT3 (ENSSHAG00000002445)	AP1S1 (ENSSHAG00000031211)	SERPINE1 (ENSSHAG00000005182)	ACHE (ENSSHAG00000007328)	TRIP6 (ENSSHAG00000021455)	SRRT (ENSSHAG00000027991)	SLC12A9 (ENSSHAG00000007555)	EPHB4 (ENSSHAG00000007881)	EPO (ENSSHAG00000008258)	POP7 (ENSSHAG00000029232)	GIGYF1 (ENSSHAG00000008674)	GNB2 (ENSSHAG00000008760)	TFR2 (ENSSHAG00000008864) ##22	FBXO24 (ENSSHAG00000009205)	PCOLCE (ENSSHAG00000009152)	ENSSHAG00000009335	LRCH4 (ENSSHAG00000029259)	ENSSHAG00000027994	AGFG2 (ENSSHAG00000000700)	NYAP1 (ENSSHAG00000009909)	TSC22D4 (ENSSHAG00000010016)	ENSSHAG00000010603	MEPCE (ENSSHAG00000030403)	ENSSHAG00000031293	STAG3 (ENSSHAG00000010619)	TRAPPC14 (ENSSHAG00000011235)	LAMTOR4 (ENSSHAG00000025304)	CNPY4 (ENSSHAG00000023094)
Opossum	MODERN SPECIES	1	MOGAT3 (ENSMODG00000004977)	VGF (ENSMODG00000004952)	ENSMODG00000004946	ENSMODG00000041363	SERPINE1 (ENSMODG00000004913)	ACHE (ENSMODG00000004882)	SRRT (ENSMODG00000004862)	TRIP6 (ENSMODG00000004834)	SLC12A9 (ENSMODG00000004813)	EPHB4 (ENSMODG00000004739)	EPO (ENSMODG00000004668)	POP7 (ENSMODG00000023662)	GIGYF1 (ENSMODG00000004660)	GNB2 (ENSMODG00000004610)	ACTL6B (ENSMODG00000004598)	TFR2 (ENSMODG00000004581) ##22	FBXO24 (ENSMODG00000004565)	LRCH4 (ENSMODG00000004547)	ENSMODG00000046871	AGFG2 (ENSMODG00000004515)	NYAP1 (ENSMODG00000004503)	TSC22D4 (ENSMODG00000004468)	ENSMODG00000025680	MEPCE (ENSMODG00000004457)	ENSMODG00000046013	STAG3 (ENSMODG00000004440)	GPC2 (ENSMODG00000004412)	GAL3ST4 (ENSMODG00000004375)	TRAPPC14 (ENSMODG00000004355)	LAMTOR4 (ENSMODG00000004302)	CNPY4 (ENSMODG00000004296)
Platypus	MODERN SPECIES	88	MOGAT3 (ENSOANG00000013413)	AP1S1 (ENSOANG00000042622)	SERPINE1 (ENSOANG00000031960)	ACHE (ENSOANG00000050305)	ENSOANG00000037346	ENSOANG00000049684	ENSOANG00000038967	TRIP6 (ENSOANG00000011843)	SLC12A9 (ENSOANG00000046393)	EPHB4 (ENSOANG00000014567)	EPO (ENSOANG00000048808)	POP7 (ENSOANG00000040132)	GIGYF1 (ENSOANG00000047246)	GNB2 (ENSOANG00000046274)	ACTL6B (ENSOANG00000009988)	TFR2 (ENSOANG00000049917) ##22	MOSPD3 (ENSOANG00000040790)	LRCH4 (ENSOANG00000047214)	FBXO24 (ENSOANG00000042029)	ENSOANG00000049460	ENSOANG00000042966	ENSOANG00000047310	ENSOANG00000044015	NYAP1 (ENSOANG00000046922)	ENSOANG00000049692	ENSOANG00000039968	MEPCE (ENSOANG00000043331)	ENSOANG00000030990	ENSOANG00000046104	ENSOANG00000045698	STAG3 (ENSOANG00000007542)
Anura	ANCESTRAL SPECIES	256													ENSGT00940000159400	ENSGT00390000017226	ENSGT00940000160860	ENSGT01030000234598.a.a.b ##22	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00940000163250.A	ENSGT00950000182899.C.b	ENSGT00940000153889	ENSGT00940000156309.A	ENSGT00940000160598
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000003114	ENSLLEG00000003074	ENSLLEG00000003044	ENSLLEG00000002979	ENSLLEG00000002946	ENSLLEG00000002928	ENSLLEG00000002916	EPHB4 (ENSLLEG00000002871)	GIGYF1 (ENSLLEG00000002482)	POP7 (ENSLLEG00000002377)	ENSLLEG00000002367	ENSLLEG00000002262	ENSLLEG00000002181	ENSLLEG00000002155	ENSLLEG00000002093	TFR2 (ENSLLEG00000002056) ##22	MEPCE (ENSLLEG00000002007)	ENSLLEG00000001970	ENSLLEG00000001780	SENP3 (ENSLLEG00000001689)	ENSLLEG00000001678	ENSLLEG00000001656	ENSLLEG00000001641	ENSLLEG00000001633	ENSLLEG00000001620	ENSLLEG00000001610	ENSLLEG00000001563	ENSLLEG00000001545	ENSLLEG00000001533	ENSLLEG00000001490	ENSLLEG00000001471
Frog	MODERN SPECIES	3	ENSXETG00000001175 #23	plscr4 (ENSXETG00000036283)	ENSXETG00000047151	ENSXETG00000033173	ENSXETG00000043194	plscr3 (ENSXETG00000047795)	ENSXETG00000042331	slc12a9 (ENSXETG00000018392)	epo (ENSXETG00000032905)	clcnkb (ENSXETG00000046577)	ENSXETG00000047438	gigyf1 (ENSXETG00000018415)	ENSXETG00000043682	ENSXETG00000031612	actl6b (ENSXETG00000046681)	tfr2 (ENSXETG00000043275) ##22	ENSXETG00000046725	zcwpw1 (ENSXETG00000046833)	mepce (ENSXETG00000044495)	ENSXETG00000047516	ENSXETG00000047355	ephb4 (ENSXETG00000011170)	sox15 (ENSXETG00000049010)	ENSXETG00000044372	mpdu1 (ENSXETG00000049310)	ENSXETG00000042560	ENSXETG00000038530	omp (ENSXETG00000020127)	eif4a1 (ENSXETG00000020123)	senp3 (ENSXETG00000043732)	ENSXETG00000042866
Coelacanth	MODERN SPECIES	772	TNFSF12 (ENSLACG00000022684)	ENSLACG00000006430	ENSLACG00000006540	RANGRF (ENSLACG00000006921)	SLC25A35 (ENSLACG00000007064)	ENSLACG00000007248	ENSLACG00000007661	ENSLACG00000008659	UFSP1 (ENSLACG00000008957)	GIGYF1 (ENSLACG00000009186)	ENSLACG00000009716	POP7 (ENSLACG00000010203)	EPO (ENSLACG00000022589)	SLC12A9 (ENSLACG00000010666)	ZAN (ENSLACG00000011022)	TFR2 (ENSLACG00000011697) ##22	zgc:158659 (ENSLACG00000011888)	ENSLACG00000022422	MEPCE (ENSLACG00000012355)	ENSLACG00000012564	ENSLACG00000012925	SLC16A13 (ENSLACG00000013270)	ENSLACG00000013447	ENSLACG00000013693	DDX47 (ENSLACG00000013814)	TP53 (ENSLACG00000014014)	ENSLACG00000014265	ENSLACG00000014390	ENSLACG00000014422	CAMTA2 (ENSLACG00000014574)	SPAG7 (ENSLACG00000014922)
Actinopterygii	ANCESTRAL SPECIES	425															ENSGT00940000156850.a.a	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000159144.C	ENSGT01030000235000
Neopterygii	ANCESTRAL SPECIES	461															ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A
Osteoglossocephalai	ANCESTRAL SPECIES	90	ENSGT00940000160409	ENSGT00940000156846	ENSGT00390000012992	ENSGT00530000063435.b	ENSGT01030000234629.B ##11	ENSGT00940000158954	ENSGT00940000164281	ENSGT00940000159079	ENSGT00940000161133	ENSGT00950000183086.a.a.a	ENSGT00940000159001	ENSGT00950000183179.b.a	ENSGT00940000162218	ENSGT00390000009300.a	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A.i	ENSGT00900000142261	ENSGT00940000157956.o.a	ENSGT00940000166305.A	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000158465	ENSGT00940000157445	ENSGT00390000009023	ENSGT00940000154343.gb
Osteoglossiformes	ANCESTRAL SPECIES	320															ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A.i	ENSGT00900000142261	ENSGT00940000157956.p	ENSGT00940000157956.o.a	ENSGT00940000166305.A	ENSGT00940000160105.rb	ENSGT00940000153761.A	ENSGT00940000159306.a	ENSGT00990000204670	ENSGT00940000162467.a.b	ENSGT00390000005094.h	ENSGT00940000162799	ENSGT00940000165297
P. kingsleyae	MODERN SPECIES	56	hprt1 (ENSPKIG00000021228)	pabir2 (ENSPKIG00000021246)	mospd1 (ENSPKIG00000021269)	ints6l (ENSPKIG00000021289)	mmgt1 (ENSPKIG00000021318)	slc9a6a (ENSPKIG00000021341)	fhl1a (ENSPKIG00000021378)	MAP7D3 (ENSPKIG00000021403)	ENSPKIG00000021454	epdl1 (ENSPKIG00000021470)	cskmt (ENSPKIG00000021487)	otub1b (ENSPKIG00000021494)	pygmb (ENSPKIG00000021524)	her5 (ENSPKIG00000021552)	ENSPKIG00000021575	tfr2 (ENSPKIG00000021639) ##22	zgc:158659 (ENSPKIG00000021676)	ENSPKIG00000021728	MEPCE (ENSPKIG00000021740)	ENSPKIG00000021748	DLG4 (ENSPKIG00000021770)	ENSPKIG00000021805	ENSPKIG00000021878	CAMTA2 (ENSPKIG00000021954)	ENSPKIG00000022009	trappc1 (ENSPKIG00000022018)	KCNAB3 (ENSPKIG00000022043)	ENSPKIG00000022089	pfn1 (ENSPKIG00000022119)	eno3 (ENSPKIG00000022150)	ENSPKIG00000022179
Asian bonytongue	MODERN SPECIES	4														otub1b (ENSSFOG00015022012)	ENSSFOG00015022022	tfr2 (ENSSFOG00015022043) ##22	zgc:158659 (ENSSFOG00015022067)	DLG4 (ENSSFOG00015022120)	ENSSFOG00015022203	CAMTA2 (ENSSFOG00015025483)	ENSSFOG00015025262	trappc1 (ENSSFOG00015028626)	KCNAB3 (ENSSFOG00015022321)	pfn1 (ENSSFOG00015022334)	eno3 (ENSSFOG00015022348)	ENSSFOG00015025868	zgc:85858 (ENSSFOG00015022388)	ENSSFOG00015022396	KCTD21 (ENSSFOG00015022401)	ENSSFOG00015022440	plod3 (ENSSFOG00015022468)
Clupeocephala	ANCESTRAL SPECIES	137	ENSGT00390000001520	ENSGT00940000163061	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00990000204670	ENSGT00940000162467.a.b	ENSGT00940000160105	ENSGT00940000166305.A	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES	184					ENSGT01100000263484.C.b.b	ENSGT00940000167671	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00900000142261	ENSGT00940000157956.o.a	ENSGT00940000166305.A	ENSGT00940000160105	ENSGT00940000162467.a.b	ENSGT00950000182805.a.a.b.b	ENSGT00940000153664.A.a	ENSGT00940000158465	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000159295	ENSGT01030000235249.b	ENSGT00390000005094.h	ENSGT00940000165297
Protacanthopterygii	ANCESTRAL SPECIES	236											ENSGT00940000153993.A.i.n	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22
Salmoninae	ANCESTRAL SPECIES	521	ENSGT00950000182805.a.a.b.b.cb	ENSGT00940000158465	ENSGT00940000153761.A	ENSGT00940000155114.p	ENSGT00940000159295	ENSGT01030000234558.A.a.a.a	ENSGT01030000234579.A.a.e	ENSGT01030000234582.e.a.vc.a	ENSGT01030000235000	ENSGT00940000159144.C.bb	ENSGT00940000153993.A.i.n	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES	157								ENSGT01030000234582.e.a.vc.a.b	ENSGT01030000235000.e	ENSGT00940000159144.C.bb	ENSGT00940000153993.A.i.n	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b.d	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00390000013285.h.f.b	ENSGT00940000155512.q.b	ENSGT00940000157103.h	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h	ENSGT00930000150973.B.e.a
Salmo	ANCESTRAL SPECIES	233									ENSGT00950000182805.a.a.b.b.bb.b	ENSGT00940000160105	ENSGT00940000153993.A.i.n	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b.d	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT01030000234582.e.a.vc.a.b	ENSGT01030000235000.e	ENSGT00940000159144.C.bb
Atlantic salmon	MODERN SPECIES	26	ENSSSAG00000087945	ENSSSAG00000002776	ENSSSAG00000120626	ENSSSAG00000108058	ENSSSAG00000112124	ENSSSAG00000086271	ENSSSAG00000087722	ENSSSAG00000116144	ENSSSAG00000093503	ENSSSAG00000076218	ENSSSAG00000113632	ENSSSAG00000099797	ENSSSAG00000081792	hmgb2b (ENSSSAG00000090592)	ENSSSAG00000098339	tfr2 (ENSSSAG00000102283) ##22	ENSSSAG00000115610	ENSSSAG00000098288	CORIN (ENSSSAG00000002918)	ENSSSAG00000093856	CNGA1 (ENSSSAG00000003250)	ENSSSAG00000073273
River trout	MODERN SPECIES	515																ENSSTUG00000029564 ##22	ENSSTUG00000029579
Oncorhynchus	ANCESTRAL SPECIES	110						ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b.bb.b.b	ENSGT00990000204670	ENSGT01060000253418	ENSGT00940000160105	ENSGT00940000153993.A.i.m	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b.c	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00390000013285.h.f.a.b	ENSGT00940000155512.q.b	ENSGT00940000157103.h	ENSGT00940000157059	ENSGT00940000156074.a.a	ENSGT00390000013285.h.e.b	ENSGT00530000063713.b.b	ENSGT00940000155588.a	ENSGT00950000183109.d.e.a	ENSGT00530000064170.d	ENSGT00940000154108.b.a.b.h	ENSGT00930000150973.B.e.a	ENSGT00940000154986.a.e.a	ENSGT00950000182936.a.a.b.b
Rainbow trout	MODERN SPECIES	13	ENSOMYG00000074974	ENSOMYG00000065552	pfn1 (ENSOMYG00000062836)	ENSOMYG00000024579	ENSOMYG00000073821	ENSOMYG00000073648	ENSOMYG00000067814	ENSOMYG00000076277	ENSOMYG00000075991	ENSOMYG00000053207	ENSOMYG00000036579	ENSOMYG00000057163	ENSOMYG00000067405	hmgb2b (ENSOMYG00000057927)	ENSOMYG00000049310	tfr2 (ENSOMYG00000051202) ##22	ENSOMYG00000050343	ENSOMYG00000053678	ENSOMYG00000017233	ENSOMYG00000063792	CORIN (ENSOMYG00000057541)	ENSOMYG00000054021	CNGA1 (ENSOMYG00000070724)	ENSOMYG00000045063	ENSOMYG00000045055	ENSOMYG00000052410	ENSOMYG00000063122	ENSOMYG00000073791	ENSOMYG00000062691	ENSOMYG00000063897	ENSOMYG00000054073
Oncorhynchus_a	ANCESTRAL SPECIES	281										ENSGT00940000160105	ENSGT00940000153993.A.i.m	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b.c	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22
Coho salmon	MODERN SPECIES	29	ENSOKIG00005034832	ENSOKIG00005034856	CNGA1 (ENSOKIG00005034930)	NFXL1 (ENSOKIG00005035546)	ENSOKIG00005035929	ENSOKIG00005035941	ENSOKIG00005035950	CORIN (ENSOKIG00005035984)	ENSOKIG00005036682	ENSOKIG00005037627	ENSOKIG00005037638	ENSOKIG00005037677	ENSOKIG00005037737	hmgb2b (ENSOKIG00005037789)	ENSOKIG00005037803	tfr2 (ENSOKIG00005037846) ##22	ENSOKIG00005038154	ENSOKIG00005038171	ENSOKIG00005038198	ENSOKIG00005038366	ENSOKIG00005038378	ENSOKIG00005038399	ENSOKIG00005038411	ENSOKIG00005013109	ENSOKIG00005013112	ENSOKIG00005013125	ENSOKIG00005013176	ENSOKIG00005013182	ENSOKIG00005013186	ENSOKIG00005013189	ENSOKIG00005013198
Chinook salmon	MODERN SPECIES	20	opn7a (ENSOTSG00005044461)	PHLPP1 (ENSOTSG00005044502)	ENSOTSG00005044518	SIRT5 (ENSOTSG00005044520)	adcy1b (ENSOTSG00005044529)	igfbp1b (ENSOTSG00005044829)	IGFBP3 (ENSOTSG00005044830)	TNS3 (ENSOTSG00005044832)	DSP (ENSOTSG00005044853)	slc22a23 (ENSOTSG00005045613)	ENSOTSG00005045615	ENSOTSG00005045618	ENSOTSG00005045620	CDH2 (ENSOTSG00005045646)	ENSOTSG00005046832	tfr2 (ENSOTSG00005046833) ##22	AQP4 (ENSOTSG00005046834)	KCTD1 (ENSOTSG00005046835)	PSMA8 (ENSOTSG00005046837)	ss18 (ENSOTSG00005046838)	ZNF521 (ENSOTSG00005046839)	OSBPL1A (ENSOTSG00005046841)	ENSOTSG00005046883	ENSOTSG00005002612	TTC39C (ENSOTSG00005002810)	vps4b (ENSOTSG00005003893)	kdsr (ENSOTSG00005003943)	BCL2 (ENSOTSG00005003950)	ENSOTSG00005004027	ENSOTSG00005012567	dpp6b (ENSOTSG00005012574)
Huchen	MODERN SPECIES	6881																ENSHHUG00000008623 ##22
Northern pike	MODERN SPECIES	23	ENSELUG00000010233	ENSELUG00000026413	ENSELUG00000015304	ENSELUG00000028878	MEPCE (ENSELUG00000030895)	ENSELUG00000028819	ENSELUG00000001686	ENSELUG00000009462	ENSELUG00000028030	ENSELUG00000005661	MEPCE (ENSELUG00000030332)	ENSELUG00000034084	zgc:158659 (ENSELUG00000033704)	hmgb2b (ENSELUG00000004942)	ctc1 (ENSELUG00000028047)	tfr2 (ENSELUG00000004918) ##22	ENSELUG00000031717	ENSELUG00000026922	ENSELUG00000027008	ENSELUG00000009043	ENSELUG00000034393	DLG4 (ENSELUG00000009025)	ENSELUG00000008961	ENSELUG00000031745	ENSELUG00000033204	ENSELUG00000030386	ENSELUG00000027581	ENSELUG00000022355	zgc:85858 (ENSELUG00000026743)	ENSELUG00000027570	eno3 (ENSELUG00000022290)
Acanthomorphata	ANCESTRAL SPECIES	161											ENSGT00940000160057	ENSGT00940000153993.A.i	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000167331.b	ENSGT00940000164853.a.b	ENSGT00390000005544	ENSGT00390000005492.c	ENSGT01030000235249.b	ENSGT00940000159295	ENSGT00940000165601	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000158465
Euacanthomorphacea	ANCESTRAL SPECIES	70	ENSGT00940000160105	ENSGT00940000162467.a.b	ENSGT00500000046195	ENSGT00950000182805.a.a.b.b	ENSGT00940000153664.A.a	ENSGT00940000158465	ENSGT00940000168264	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057	ENSGT00940000153993.A.i	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT01030000234579.A.a.e	ENSGT01030000234582.e.a	ENSGT01030000235000	ENSGT00940000175263
Percomorphaceae	ANCESTRAL SPECIES	65													ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000167331.b	ENSGT00940000164853.a.b	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000158465	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000157059.x	ENSGT00940000157103	ENSGT00390000013285.h	ENSGT00940000175251	ENSGT00390000005544	ENSGT00940000165297.b	ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105
Ovalentaria	ANCESTRAL SPECIES	38							ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057
Atherinomorphae	ANCESTRAL SPECIES	80													ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057
Cyprinodontiformes	ANCESTRAL SPECIES	75										ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.a	ENSGT00940000161847.b.a.e.b.pb.a	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000159306.b.b	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057
Cyprinodontoidei	ANCESTRAL SPECIES	224																ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a.t.b
Poeciliinae	ANCESTRAL SPECIES	47											ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.a.c	ENSGT00940000161847.b.a.e.b.pb.a.e	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a.t.a	ENSGT00670000099314.A	ENSGT01100000265904	ENSGT00940000153993.A.i	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.b.a	ENSGT00940000161847.b.a.e.b.pb.b.a	ENSGT00940000158465	ENSGT00940000172390	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b
Poecilia	ANCESTRAL SPECIES	116														ENSGT00950000183127.c.b.d.a.b.a.a.a.a.a.c	ENSGT00940000161847.b.a.e.b.pb.a.e	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a.t.a	ENSGT00670000099314.A	ENSGT01100000265904	ENSGT00940000153993.A.i	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057
NAME_6	ANCESTRAL SPECIES	396														ENSGT00950000183127.c.b.d.a.b.a.a.a.a.a.c	ENSGT00940000161847.b.a.e.b.pb.a.e	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a.t.a	ENSGT01100000265904	ENSGT00940000153993.A.i	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057
Amazon molly	MODERN SPECIES	809															ENSPFOG00000023122	tfr2 (ENSPFOG00000015833) ##22	DLG4 (ENSPFOG00000015927)	ENSPFOG00000023613	MEPCE (ENSPFOG00000016062)	ENSPFOG00000016082	ENSPFOG00000016118	slc25a11 (ENSPFOG00000016131)	pfn1 (ENSPFOG00000023924)	eno3 (ENSPFOG00000016136)	ENSPFOG00000022484	zgc:85858 (ENSPFOG00000016228)	CAMTA2 (ENSPFOG00000016244)	ENSPFOG00000016365	ENSPFOG00000024484	cyb5d1 (ENSPFOG00000016377)	plod3 (ENSPFOG00000016402)
Sailfin molly	MODERN SPECIES	2725														ENSPLAG00000017320	ENSPLAG00000013960	tfr2 (ENSPLAG00000013926) ##22
Guppy	MODERN SPECIES	87																ENSPREG00000009997 ##22
Platyfish	MODERN SPECIES	5	ENSXMAG00000030024	ENSXMAG00000023546	ENSXMAG00000024304	ENSXMAG00000028937	ENSXMAG00000026163	ENSXMAG00000028506	ENSXMAG00000021190	ENSXMAG00000008535	ENSXMAG00000025588	ATP1B2 (ENSXMAG00000011085)	ENSXMAG00000011106	ENSXMAG00000006286	ENSXMAG00000023232	ENSXMAG00000024252	ENSXMAG00000026182	tfr2 (ENSXMAG00000028985) ##22	ENSXMAG00000022795	DLG4 (ENSXMAG00000002751)	ENSXMAG00000028887	ENSXMAG00000022263	ENSXMAG00000026962	MEPCE (ENSXMAG00000016250)	ENSXMAG00000025819	ENSXMAG00000022175	ENSXMAG00000021077	trappc1 (ENSXMAG00000007372)	psmb6 (ENSXMAG00000026337)	ephb4b (ENSXMAG00000007385)	ENSXMAG00000022353	ENSXMAG00000026297	ENSXMAG00000013354
NAME_4	ANCESTRAL SPECIES	629																ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a.t.b
Mummichog	MODERN SPECIES	25																tfr2 (ENSFHEG00000022026) ##22
Sheepshead minnow	MODERN SPECIES	1867															ENSCVAG00000009376	tfr2 (ENSCVAG00000009438) ##22	ENSCVAG00000009453
Aplocheiloidei	ANCESTRAL SPECIES	87	ENSGT01040000240400.c.b.b.a.a.a	ENSGT01040000240400.c.b.b.b	ENSGT01040000240385.A.a.b.b	ENSGT00940000167415	ENSGT01030000234754	ENSGT00940000156397.a.b	ENSGT00940000166741	ENSGT01030000234599.a.b.d.a.b.a	ENSGT01030000234599.a.b.d.b.a.b	ENSGT00950000182872.f.b.b	ENSGT00940000156907.p.b.b.a.a	ENSGT00940000154807.a.b.a.a.f	ENSGT00650000094959	ENSGT00940000164143.a.b	ENSGT00940000164143.a.a	ENSGT01030000234598.a.a.b ##22	ENSGT00950000183116.b.a.a.b.a.a.a	ENSGT00940000154311.a.a.a.b.d	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.b.b.m.a.b	ENSGT00940000155044.A	ENSGT00950000182966.C.a	ENSGT00950000182966.C.b.b	ENSGT01100000263538.A.a.a.a.j.a.a.a.b.a.b	ENSGT01100000263538.A.a.a.a.j.a.a.a.b.b	ENSGT01100000263538.A.a.a.a.j.b.a	ENSGT01100000263538.A.a.a.a.j.a.a.b	ENSGT01100000263538.A.a.a.a.j.a.a.a.b.a.a	ENSGT00950000182933.C.j	ENSGT00940000158350	ENSGT00390000012496.b.h	ENSGT00940000172777
Turquoise killifish	MODERN SPECIES	1613	b3gat3 (ENSNFUG00015012299)	NAA40 (ENSNFUG00015012308)	RCOR2 (ENSNFUG00015012341)	MARK2 (ENSNFUG00015012450)	KRCP (ENSNFUG00015012774)	CCT7 (ENSNFUG00015012799)	hspa12b (ENSNFUG00015013048)	PAIP2B (ENSNFUG00015013165)	ndrg2 (ENSNFUG00015013181)	ENSNFUG00015013229	ENSNFUG00015013238	ENSNFUG00015013242	ENSNFUG00015013247	ENSNFUG00015013272	ENSNFUG00015013282	tfr2 (ENSNFUG00015013286) ##22	slc12a10.1 (ENSNFUG00015013583)	ltb4r (ENSNFUG00015018877)	ltb4r2a (ENSNFUG00015018881)	ENSNFUG00015018882	ENSNFUG00015018885	ENSNFUG00015018891	ENSNFUG00015018900	MYADM (ENSNFUG00015018904)	vangl2 (ENSNFUG00015019132)	ENSNFUG00015019134	usp36 (ENSNFUG00015019140)	GABRB3 (ENSNFUG00015000059)	MPP4 (ENSNFUG00015000074)	zgc:113142 (ENSNFUG00015000121)	tmem237b (ENSNFUG00015000151)
Mangrove rivulus	MODERN SPECIES	166	mrpl48 (ENSKMAG00000010818)	ENSKMAG00000010838	ENSKMAG00000010868	ENSKMAG00000010976	ENSKMAG00000011045	ndrg2 (ENSKMAG00000011089)	ENSKMAG00000011127	ENSKMAG00000011137	hnrnpc (ENSKMAG00000011170)	ENSKMAG00000011225	ENSKMAG00000011250	ENSKMAG00000011269	ENSKMAG00000011287	ENSKMAG00000011306	ENSKMAG00000011339	tfr2 (ENSKMAG00000011376) ##22	ENSKMAG00000011406
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Cichlidae	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Pseudocrenilabrinae	ANCESTRAL SPECIES	58						ENSGT01060000248668.c.a.b	ENSGT00990000203878.A.m.a	ENSGT01060000248668.d	ENSGT00940000153993.A.i	ENSGT00940000161847.b.a.e.b.kb.a.a	ENSGT00950000183127.c.b.d.a.b.a.b.c	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.d.b	ENSGT00950000183127.c.b.d.a.a.a.a.g	ENSGT00940000161847.b.a.e.b.kb.b	ENSGT00950000183127.c.b.d.a.b.a.b.d	ENSGT01030000234598.a.a.b ##22	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.e.b.b.b	ENSGT00940000161847.b.a.e.b.jb.a.b	ENSGT00390000011553
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	79											ENSGT00940000176853.C	ENSGT00940000168804.b.b.a.a.a	ENSGT00390000010830.a	ENSGT00940000161847.b.a.e.b.kb.b	ENSGT00950000183127.c.b.d.a.b.a.b.d	ENSGT01030000234598.a.a.b ##22	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.e.b.b.b	ENSGT00940000161847.b.a.e.b.jb.a.b	ENSGT00390000011553
Haplochromini	ANCESTRAL SPECIES	95							ENSGT00940000153993.A.i	ENSGT00940000161847.b.a.e.b.kb.a.a	ENSGT00950000183127.c.b.d.a.b.a.b.c.a	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.d.b	ENSGT00940000176853.C	ENSGT00940000168804.b.b.a.a.a	ENSGT00390000010830.a	ENSGT00940000161847.b.a.e.b.kb.b	ENSGT00950000183127.c.b.d.a.b.a.b.d	ENSGT01030000234598.a.a.b ##22
Haplochromini_A	ANCESTRAL SPECIES	93							ENSGT00940000153993.A.i	ENSGT00940000161847.b.a.e.b.kb.a.a	ENSGT00950000183127.c.b.d.a.b.a.b.c.a	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.d.b	ENSGT00940000176853.C.a.b	ENSGT00940000168804.b.b.a.a.a	ENSGT00390000010830.a	ENSGT00940000161847.b.a.e.b.kb.b	ENSGT00950000183127.c.b.d.a.b.a.b.d	ENSGT01030000234598.a.a.b ##22	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.c	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.e.b.b.b	ENSGT00940000161847.b.a.e.b.jb.a.b	ENSGT00390000011553.k
Haplochromini_B	ANCESTRAL SPECIES	112							ENSGT00940000153993.A.i	ENSGT00940000161847.b.a.e.b.kb.a.a	ENSGT00950000183127.c.b.d.a.b.a.b.c.a	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.d.b	ENSGT00940000176853.C.a.b	ENSGT00940000168804.b.b.a.a.a	ENSGT00390000010830.a	ENSGT00940000161847.b.a.e.b.kb.b	ENSGT00950000183127.c.b.d.a.b.a.b.d	ENSGT01030000234598.a.a.b ##22	ENSGT01100000263473.a.b.g.a.a.b.a.a.a.a.a.q.b.c	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.e.b.b.b	ENSGT00940000161847.b.a.e.b.jb.a.b	ENSGT00390000011553.k.a
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	15	ENSACLG00000023384	ENSACLG00000023412	ENSACLG00000023435	ENSACLG00000023452	ENSACLG00000023465	ENSACLG00000023514	ENSACLG00000023524	ENSACLG00000023533	ENSACLG00000023554	hspa5 (ENSACLG00000023833)	ENSACLG00000027127	ENSACLG00000027130	ENSACLG00000027137	ENSACLG00000027144	ENSACLG00000027151	tfr2 (ENSACLG00000027157) ##22	ENSACLG00000027188	tfr2 (ENSACLG00000027194) ##22	ENSACLG00000027204	ENSACLG00000027221	ENSACLG00000027226	ENSACLG00000027258	ENSACLG00000027318	ENSACLG00000027843	ENSACLG00000027844	ENSACLG00000027846	ENSACLG00000027861	ENSACLG00000027983	ENSACLG00000027984	ENSACLG00000027985	ENSACLG00000027986
Eastern happy	MODERN SPECIES	15	ENSACLG00000023435	ENSACLG00000023452	ENSACLG00000023465	ENSACLG00000023514	ENSACLG00000023524	ENSACLG00000023533	ENSACLG00000023554	hspa5 (ENSACLG00000023833)	ENSACLG00000027127	ENSACLG00000027130	ENSACLG00000027137	ENSACLG00000027144	ENSACLG00000027151	tfr2 (ENSACLG00000027157) ##22	ENSACLG00000027188	tfr2 (ENSACLG00000027194) ##22	ENSACLG00000027204	ENSACLG00000027221	ENSACLG00000027226	ENSACLG00000027258	ENSACLG00000027318	ENSACLG00000027843	ENSACLG00000027844	ENSACLG00000027846	ENSACLG00000027861	ENSACLG00000027983	ENSACLG00000027984	ENSACLG00000027985	ENSACLG00000027986	ENSACLG00000027987	ENSACLG00000027988
Zebra mbuna	MODERN SPECIES	196										hspa5 (ENSMZEG00005025386)	ENSMZEG00005026142	ENSMZEG00005026143	hspa5 (ENSMZEG00005026154)	ENSMZEG00005026567	ENSMZEG00005026568	tfr2 (ENSMZEG00005026570) ##22
P. nyererei	MODERN SPECIES	715											ENSPNYG00000007292	ENSPNYG00000007272	ENSPNYG00000007258	ENSPNYG00000007235	ENSPNYG00000007208	tfr2 (ENSPNYG00000007180) ##22	ENSPNYG00000007162	ENSPNYG00000007127	ENSPNYG00000007108	ENSPNYG00000007100	ENSPNYG00000007088	ENSPNYG00000007052	ENSPNYG00000007034	ENSPNYG00000007022	ENSPNYG00000006981
Lyretail cichlid	MODERN SPECIES	459	ENSNBRG00000006319	ENSNBRG00000006274	ENSNBRG00000006250	ENSNBRG00000006216	ENSNBRG00000006196	ENSNBRG00000006118	ENSNBRG00000006087	cmah (ENSNBRG00000006051)	ENSNBRG00000006036	ENSNBRG00000006003	ENSNBRG00000005994	ENSNBRG00000005986	ENSNBRG00000005970	ENSNBRG00000005960	ENSNBRG00000005933	tfr2 (ENSNBRG00000005655) ##22	ENSNBRG00000005607
Nile tilapia	MODERN SPECIES	15	ENSONIG00000030652	ENSONIG00000039059	hspa5 (ENSONIG00000030303)	ENSONIG00000032731	hspa5 (ENSONIG00000042812)	ENSONIG00000037969	ENSONIG00000040574	ENSONIG00000008338	ENSONIG00000036365	ENSONIG00000028371	ENSONIG00000032985	ENSONIG00000007445	ENSONIG00000036285	ENSONIG00000019001	ENSONIG00000028226	tfr2 (ENSONIG00000019005) ##22	ENSONIG00000032960	ENSONIG00000003614	ENSONIG00000028695	ENSONIG00000037234	ENSONIG00000027366	ENSONIG00000036807	ENSONIG00000033967	ENSONIG00000034078	ENSONIG00000007917	ENSONIG00000028631	ENSONIG00000035606	ENSONIG00000040571	ENSONIG00000005905	ENSONIG00000040458	ENSONIG00000018452
Pomacentridae	ANCESTRAL SPECIES	252																ENSGT01030000234598.a.a.b ##22	ENSGT00990000204085	ENSGT01050000244843.c.b.a.a	ENSGT01050000244843.c.a.b.a.a.a.a.a.a	ENSGT01050000244843.c.a.b.a.b.a.a
Bicolor damselfish	MODERN SPECIES	2527																tfr2 (ENSSPAG00000018604) ##22	ENSSPAG00000018592	ENSSPAG00000018573	ENSSPAG00000018548	ENSSPAG00000018534	ENSSPAG00000018527	ENSSPAG00000018510	ENSSPAG00000018478
Pomacentridae_A	ANCESTRAL SPECIES	304																ENSGT01030000234598.a.a.b ##22	ENSGT00990000204085	ENSGT01050000244843.c.b.a.a
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4087																ENSAPOG00000020107 ##22
Spiny chromis	MODERN SPECIES	4092																ENSAPOG00000019767 ##22
Spiny chromis	MODERN SPECIES	3413																tfr2 (ENSAPOG00000015396) ##22	ENSAPOG00000015380
Amphiprion	ANCESTRAL SPECIES	96	ENSGT01070000253822.D.b	ENSGT01090000260059.a.b.b.b.a.d.a.b	ENSGT00940000166038	ENSGT00940000166707	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT01030000234592.A.a.b.i.a	ENSGT01030000234592.A.a.b.j.n	ENSGT00940000155598.b.k.a	ENSGT00950000182907.a.b.a	ENSGT00940000154737.d	ENSGT01050000244843.c.a.b.a.a.b.a.a	ENSGT00940000163711.b.e.b.a.b	ENSGT00940000161847.b.a.e.b.mb.b	ENSGT00950000183127.c.b.d.a.b.a.a.a.a.h.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00990000204085	ENSGT01050000244843.c.b.a.a	ENSGT01050000244843.c.a.b.a.a.a.a.a.a	ENSGT00940000161814.g.b.d.b.a	ENSGT00940000161814.g.b.d.a.c	ENSGT00940000161814.g.b.d.a.d
Orange clownfish	MODERN SPECIES	15	mfsd8 (ENSAPEG00000023620)	ENSAPEG00000023637	abcg2a (ENSAPEG00000023653)	ENSAPEG00000023676	ENSAPEG00000023702	ENSAPEG00000023733	tec (ENSAPEG00000023770)	ENSAPEG00000023828	ENSAPEG00000023844	CORO2A (ENSAPEG00000023850)	ENSAPEG00000023860	ENSAPEG00000023872	ENSAPEG00000023892	ENSAPEG00000023898	ENSAPEG00000023913	tfr2 (ENSAPEG00000023927) ##22	ENSAPEG00000023936	ENSAPEG00000023946	ENSAPEG00000023950	ENSAPEG00000023955	ENSAPEG00000023964	ENSAPEG00000023971	ENSAPEG00000023977	ENSAPEG00000023984	ENSAPEG00000023998	ENSAPEG00000024007	ENSAPEG00000024016	mrpl48 (ENSAPEG00000024029)	ENSAPEG00000024042	PEA15 (ENSAPEG00000000320)	casq1b (ENSAPEG00000000348)
Clown anemonefish	MODERN SPECIES	1503									CORO2A (ENSAOCG00000020860)	ENSAOCG00000020870	ENSAOCG00000020933	ENSAOCG00000020963	ENSAOCG00000020976	ENSAOCG00000020983	ENSAOCG00000020996	tfr2 (ENSAOCG00000021089) ##22	ENSAOCG00000021098	ENSAOCG00000021113	ENSAOCG00000021125	ENSAOCG00000021134	ENSAOCG00000002363	ENSAOCG00000021152	ENSAOCG00000021164	ENSAOCG00000021214	ENSAOCG00000021224	ENSAOCG00000021232	ENSAOCG00000021245
Percomorphaceae_C	ANCESTRAL SPECIES	20					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390	ENSGT00940000165297.b	ENSGT00390000005544	ENSGT00940000160105	ENSGT00940000162467.a.b	ENSGT00500000046195
Eupercaria	ANCESTRAL SPECIES	38					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105	ENSGT00390000005544	ENSGT00940000165297.b
Tetraodontidae	ANCESTRAL SPECIES	78								ENSGT00940000167331.b	ENSGT00940000164913	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000155114	ENSGT00940000160057	ENSGT00940000158465	ENSGT00940000172390	ENSGT00950000182805.a.a.b.b	ENSGT00940000153761.A	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000165359.b	ENSGT00940000160105	ENSGT00390000005544	ENSGT00390000005094.h	ENSGT00940000165297.b
Fugu	MODERN SPECIES	20	ENSTRUG00000030254	ENSTRUG00000032148	ENSTRUG00000008117	ENSTRUG00000033226	ENSTRUG00000031418	ENSTRUG00000027752	eif4e2rs1 (ENSTRUG00000006874)	zgc:158659 (ENSTRUG00000029194)	ENSTRUG00000021980	ENSTRUG00000005538	ATP1B2 (ENSTRUG00000027679)	ENSTRUG00000026651	ENSTRUG00000004570	ENSTRUG00000017444	ENSTRUG00000026157	tfr2 (ENSTRUG00000003683) ##22	ENSTRUG00000031916	ENSTRUG00000033354	psmb6 (ENSTRUG00000001595)	ephb4b (ENSTRUG00000028576)	ENSTRUG00000028182	KCNAB3 (ENSTRUG00000029820)	ENSTRUG00000022288	ENSTRUG00000030197	ENSTRUG00000026708	slc25a11 (ENSTRUG00000001063)	ENSTRUG00000033334	eno3 (ENSTRUG00000000959)	trappc1 (ENSTRUG00000032780)	cnp-2 (ENSTRUG00000033063)	zgc:85858 (ENSTRUG00000029414)
Tetraodon	MODERN SPECIES	26	serpina7 (ENSTNIG00000004551)	carnmt1 (ENSTNIG00000004552)	trpm6 (ENSTNIG00000004554)	ENSTNIG00000004556	nucks1a (ENSTNIG00000004557)	ENSTNIG00000004571	ENSTNIG00000000621	snx7 (ENSTNIG00000004575)	plag1 (ENSTNIG00000004576)	mos (ENSTNIG00000004577)	alg14 (ENSTNIG00000004578)	f3a (ENSTNIG00000004579)	ENSTNIG00000000773	ENSTNIG00000004580	ENSTNIG00000004611	tfr2 (ENSTNIG00000004612) ##22	DLG4 (ENSTNIG00000004613)	ENSTNIG00000000388	ENSTNIG00000000242	ENSTNIG00000004614	ephb4b (ENSTNIG00000004615)	ENSTNIG00000019764	ENSTNIG00000004628	anapc10 (ENSTNIG00000004629)	abce1 (ENSTNIG00000004630)	ENSTNIG00000004631	ENSTNIG00000004632	si:dkeyp-104h9.5 (ENSTNIG00000004635)	icmt (ENSTNIG00000004636)	ENSTNIG00000004650	exoc6 (ENSTNIG00000004667)
Eupecaria_A	ANCESTRAL SPECIES	35					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT00390000005544	ENSGT00940000165297.b	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000160057	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105
Ballan wrasse	MODERN SPECIES	1757															ENSLBEG00000019357	tfr2 (ENSLBEG00000019339) ##22
Eupecaria_B	ANCESTRAL SPECIES	39					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000159144.C	ENSGT00940000153664.B.q.a	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00950000183127.c.b.d.a.b.b	ENSGT00940000161847.b.a.e.b
Perciformes	ANCESTRAL SPECIES	31					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000165297.b	ENSGT00390000005544	ENSGT01050000244843.c.a.b.a.a.a.b.a.b.b.b.a.a.b	ENSGT01050000244843.c.a.b.a.a.a.b.a.a.b.b.a	ENSGT01050000244843.c.a.b.a.a.a.b.a.b.b.b.a.b.a.b	ENSGT01050000244843.c.a.b.a.a.a.b.a.b.b.b.a.a.a	ENSGT01030000235021
Cottioidei	ANCESTRAL SPECIES	79							ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000165297.b	ENSGT00390000005544	ENSGT00940000158465	ENSGT00940000172390	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105
Stickleback	MODERN SPECIES	106								zgc:158659 (ENSGACG00000001192)	eif4e2rs1 (ENSGACG00000001189)	ENSGACG00000001181	ENSGACG00000001180	ENSGACG00000001177	ATP1B2 (ENSGACG00000001175)	hmgb2b (ENSGACG00000001173)	ENSGACG00000001169	tfr2 (ENSGACG00000001165) ##22	DLG4 (ENSGACG00000001161)	ENSGACG00000001158	ephb4b (ENSGACG00000001154)	psmb6 (ENSGACG00000001147)	trappc1 (ENSGACG00000001144)	KCNAB3 (ENSGACG00000001141)	cyb5d1 (ENSGACG00000001135)	ENSGACG00000001133	ENSGACG00000001132	ift46 (ENSGACG00000001131)	slc25a11 (ENSGACG00000001125)	ENSGACG00000001123	eno3 (ENSGACG00000001113)	zgc:85858 (ENSGACG00000001111)	CAMTA2 (ENSGACG00000001106)
Perciformes_a	ANCESTRAL SPECIES	85					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a
Channel bull blenny	MODERN SPECIES	126							eif4e2rs1 (ENSCGOG00000016767)	zgc:158659 (ENSCGOG00000016639)	ENSCGOG00000016634	zgc:153012 (ENSCGOG00000016631)	ENSCGOG00000016590	ATP1B2 (ENSCGOG00000016554)	hmgb2b (ENSCGOG00000016412)	zgc:123107 (ENSCGOG00000016403)	ENSCGOG00000016402	tfr2 (ENSCGOG00000016399) ##22	DLG4 (ENSCGOG00000013702)
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	429																tfr2 (ENSSLUG00000019251) ##22	sucla2 (ENSSLUG00000019261)	med4 (ENSSLUG00000019285)	itm2bb (ENSSLUG00000019292)	ENSSLUG00000019310
Pike perch	MODERN SPECIES	612																ENSSLUG00000017777 ##22	sucla2 (ENSSLUG00000017776)
Eupecaria_C	ANCESTRAL SPECIES	81																ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00950000183127.c.b.d.a.b.b	ENSGT00940000161847.b.a.e.b	ENSGT00390000011553
Gilthead seabream	MODERN SPECIES	28						eno3 (ENSSAUG00010002901)	psmb6 (ENSSAUG00010002994)	ephb4b (ENSSAUG00010003059)	ENSSAUG00010003364	ENSSAUG00010003366	ENSSAUG00010003367	ENSSAUG00010003368	ENSSAUG00010003370	ENSSAUG00010003376	ENSSAUG00010003378	tfr2 (ENSSAUG00010003379) ##22	DLG4 (ENSSAUG00010003392)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	75																ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000153761.A	ENSGT00940000155114	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000180422	ENSGT00390000005492.c	ENSGT00390000018426	ENSGT01030000234558.A.a.a.a	ENSGT00440000037582
Large yellow croaker	MODERN SPECIES	42																tfr2 (ENSLCRG00005019011) ##22	DLG4 (ENSLCRG00005019029)	MEPCE (ENSLCRG00005019301)	trappc1 (ENSLCRG00005019302)	ENSLCRG00005019303	eno3 (ENSLCRG00005019311)	ephb4b (ENSLCRG00005019756)	ENSLCRG00005019921	slc25a11 (ENSLCRG00005014893)	ENSLCRG00005014896	ENSLCRG00005014897	ENSLCRG00005014900	ENSLCRG00005014901
European seabass	MODERN SPECIES	40												ENSDLAG00005011662	ENSDLAG00005020216	ENSDLAG00005020215	ENSDLAG00005034907	ENSDLAG00005031112 ##22	ENSDLAG00005027282
Percomorphaceae_D	ANCESTRAL SPECIES	30			ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000159144.C	ENSGT00940000153664.B.q.a	ENSGT00940000175263	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390
Carangaria	ANCESTRAL SPECIES	35						ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000159144.C	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00950000183127.c.b.d.a.b.b	ENSGT00940000161847.b.a.e.b	ENSGT00390000011553	ENSGT00940000153299.b.a.a	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000159306.b.b	ENSGT00940000168264	ENSGT00940000158465	ENSGT00940000172390	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105
Carangaria_A	ANCESTRAL SPECIES	100													ENSGT00390000011553	ENSGT00940000153299.b.a.a	ENSGT00670000099314.C	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234579.A.a.e	ENSGT01030000234582.e.a	ENSGT01030000235000	ENSGT00940000175263	ENSGT00940000164913	ENSGT00940000167331.b	ENSGT00940000164853.a.b
Seriola	ANCESTRAL SPECIES	156					ENSGT00940000164853.a.b	ENSGT00940000167331.b	ENSGT00940000164913	ENSGT00940000159144.C	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00950000183127.c.b.d.a.b.b	ENSGT00940000161847.b.a.e.b	ENSGT00390000011553	ENSGT00940000153299.b.a.a	ENSGT00670000099314.C	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i
Yellowtail amberjack	MODERN SPECIES	3210						ENSSLDG00000020149	eif4e2rs1 (ENSSLDG00000020102)	ENSSLDG00000020065	zgc:158659 (ENSSLDG00000019936)	ENSSLDG00000019906	ENSSLDG00000019874	ATP1B2 (ENSSLDG00000019852)	ENSSLDG00000019813	ENSSLDG00000019794	ENSSLDG00000019777	tfr2 (ENSSLDG00000019749) ##22	DLG4 (ENSSLDG00000019707)	ENSSLDG00000019699	ENSSLDG00000019673
Greater amberjack	MODERN SPECIES	182	ENSSDUG00000007842	ENSSDUG00000007896	eif4e2rs1 (ENSSDUG00000007905)	ENSSDUG00000007916	zgc:158659 (ENSSDUG00000007928)	ENSSDUG00000008038	ENSSDUG00000008057	ENSSDUG00000008076	ATP1B2 (ENSSDUG00000008103)	ENSSDUG00000008152	ENSSDUG00000008701	ENSSDUG00000008714	ENSSDUG00000008752	ENSSDUG00000008757	ENSSDUG00000008767	tfr2 (ENSSDUG00000008781) ##22
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	694														ENSLCAG00010003004	ENSLCAG00010003006	tfr2 (ENSLCAG00010003014) ##22	ENSLCAG00010003029	ENSLCAG00010003033
Barramundi perch	MODERN SPECIES	1681																tfr2 (ENSLCAG00010021794) ##22
Anabantaria	ANCESTRAL SPECIES	42								ENSGT00940000164913	ENSGT01030000235000	ENSGT01030000234582.e.a	ENSGT01030000234579.A.a.e	ENSGT00940000153299.b.b	ENSGT00390000011553	ENSGT00940000161847.b.a.e.b	ENSGT00950000183127.c.b.d.a.b.b	ENSGT01030000234598.a.a.b ##22	ENSGT00940000157956.o.a	ENSGT00940000153993.A.i	ENSGT00940000160057	ENSGT00940000155114	ENSGT00940000153761.A	ENSGT00940000169513	ENSGT00940000158465	ENSGT00940000172390	ENSGT00940000153664.A.a	ENSGT00950000182805.a.a.b.b	ENSGT00500000046195	ENSGT00940000162467.a.b	ENSGT00940000160105	ENSGT00940000159306.b.b	ENSGT00390000005544
Zig-zag eel	MODERN SPECIES	9				ENSMAMG00000011571	ENSMAMG00000011531	ENSMAMG00000011518	ENSMAMG00000011506	ENSMAMG00000011473	ENSMAMG00000011434	ENSMAMG00000011407	ENSMAMG00000011466	ENSMAMG00000026632	ENSMAMG00000011301	ENSMAMG00000025217	ENSMAMG00000011289	ENSMAMG00000011209 ##22	ENSMAMG00000011155	ENSMAMG00000025681	ENSMAMG00000011139	ENSMAMG00000011118	ENSMAMG00000011060	ENSMAMG00000011039	ENSMAMG00000011029	ENSMAMG00000010997	ENSMAMG00000028546	ENSMAMG00000026308	ENSMAMG00000025068	ENSMAMG00000028320	ENSMAMG00000010922	ENSMAMG00000010906	ENSMAMG00000010889
Anabantoidei	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000005688	ENSBSLG00000005677	ENSBSLG00000005643	ENSBSLG00000005617	ENSBSLG00000005585	ENSBSLG00000005577	ENSBSLG00000005548	ENSBSLG00000005454	ENSBSLG00000005426	ENSBSLG00000005356	ENSBSLG00000005322	ENSBSLG00000005302	ENSBSLG00000005282	ENSBSLG00000001444	ENSBSLG00000001442	tfr2 (ENSBSLG00000001424) ##22	ENSBSLG00000001379	ENSBSLG00000001352	ENSBSLG00000001321	ENSBSLG00000001291	ENSBSLG00000001279	ENSBSLG00000001251	ENSBSLG00000001236	ENSBSLG00000001220	ENSBSLG00000001193	ENSBSLG00000001070	ENSBSLG00000001068	ENSBSLG00000001067	ENSBSLG00000001066	ENSBSLG00000001061	CORO2A (ENSBSLG00000001056)
Climbing perch	MODERN SPECIES	9	ENSATEG00000025826	ENSATEG00000006014	ENSATEG00000018420	ENSATEG00000001739	ENSATEG00000001754	ENSATEG00000025282	ENSATEG00000029394	ENSATEG00000001815	ENSATEG00000001876	ENSATEG00000029649	ENSATEG00000029551	ENSATEG00000017530	ENSATEG00000002293	ENSATEG00000002338	ENSATEG00000002707	ENSATEG00000002716 ##22	ENSATEG00000002757	ENSATEG00000016995	ENSATEG00000002820	ENSATEG00000028015	ENSATEG00000002889	ENSATEG00000002899	ENSATEG00000027554	ENSATEG00000028255	ENSATEG00000016448	ENSATEG00000003049	ENSATEG00000030063	ENSATEG00000003329	ENSATEG00000003344	ENSATEG00000003350	ENSATEG00000003382
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005018077	ENSMMDG00005018058	ENSMMDG00005017976	ENSMMDG00005017922	ENSMMDG00005017910	ENSMMDG00005017784	ENSMMDG00005017777	KCNAB3 (ENSMMDG00005017760)	trappc1 (ENSMMDG00005017757)	psmb6 (ENSMMDG00005017756)	ephb4b (ENSMMDG00005017692)	ENSMMDG00005017683	ENSMMDG00005017682	hmgb2b (ENSMMDG00005017680)	ENSMMDG00005017678	tfr2 (ENSMMDG00005017676) ##22	ENSMMDG00005017673	DLG4 (ENSMMDG00005017589)	ENSMMDG00005017576	ENSMMDG00005017569	eif4e2rs1 (ENSMMDG00005017564)	atp1b2a (ENSMMDG00005017563)	ENSMMDG00005017562	ENSMMDG00005015919	ENSMMDG00005015238	ENSMMDG00005015228	ENSMMDG00005014116	ENSMMDG00005014062	ENSMMDG00005014035	ENSMMDG00005014032	ENSMMDG00005013201
Otomorpha	ANCESTRAL SPECIES	149								ENSGT00940000160057	ENSGT00940000157956.o.a	ENSGT00900000142261	ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000156074.a.a	ENSGT00940000157059	ENSGT00940000157103	ENSGT00390000013285.h	ENSGT00940000160368	ENSGT00390000011365.b.w.b	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT00940000155598.b.m.b	ENSGT01060000248998	ENSGT01030000235336	ENSGT01030000235123	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042
Otophysi	ANCESTRAL SPECIES	164												ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000156074.a.a	ENSGT00940000157059	ENSGT00940000157103	ENSGT00390000013285.h	ENSGT00940000160368	ENSGT00390000011365.b.w.b	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT00940000155598.b.m.b	ENSGT00940000153942.b	ENSGT00390000005844.a.a	ENSGT00940000167699	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042.w
Characiphysae	ANCESTRAL SPECIES	160												ENSGT00940000154737.d.i	ENSGT00950000182907.a.b.a	ENSGT00940000154466.bc	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000156074.a.a	ENSGT00940000157059	ENSGT00940000157103	ENSGT00390000013285.h	ENSGT00940000160368	ENSGT00390000011365.b.w.b	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT00940000155598.b.n	ENSGT00940000164913	ENSGT00560000077278.a	ENSGT00940000153993.A.i	ENSGT00980000199088	ENSGT00940000157956.o.a	ENSGT00940000160057
Characiphysae_b	ANCESTRAL SPECIES	268												ENSGT00940000154737.d.i	ENSGT00950000182907.a.b.a	ENSGT00940000154466.bc	ENSGT00390000011553.c	ENSGT01030000234598.a.a.b ##22	ENSGT00940000156074.a.a	ENSGT00940000157059
Characoidei	ANCESTRAL SPECIES	407												ENSGT00940000154737.d.i	ENSGT00950000182907.a.b.a	ENSGT00940000154466.bc	ENSGT00390000011553.c	ENSGT01030000234598.a.a.b ##22
Red-bellied piranha	MODERN SPECIES	978												ENSPNAG00000007447	ENSPNAG00000007448	HMGB2 (ENSPNAG00000007450)	ENSPNAG00000000206	tfr2 (ENSPNAG00000000210) ##22
Mexicana tetra	MODERN SPECIES	764													ENSAMXG00000039073	ENSAMXG00000014218	ctc1 (ENSAMXG00000014176)	tfr2 (ENSAMXG00000014119) ##22	ENSAMXG00000038283	ENSAMXG00000041311	HMGB2 (ENSAMXG00000038355)	ENSAMXG00000037405	ENSAMXG00000036457
Electric eel	MODERN SPECIES	1124															ctc1 (ENSEEEG00000006679)	tfr2 (ENSEEEG00000006682) ##22	CNGA1 (ENSEEEG00000006691)	NFXL1 (ENSEEEG00000006699)	ENSEEEG00000006714
Channel catfish	MODERN SPECIES	6	ENSIPUG00000004247	ENSIPUG00000004229	DLG4 (ENSIPUG00000004144)	ephb4b (ENSIPUG00000004113)	ENSIPUG00000004107	ENSIPUG00000004097	ENSIPUG00000004090	ENSIPUG00000004080	itchb (ENSIPUG00000003949)	eif4e2rs1 (ENSIPUG00000003906)	ENSIPUG00000003853	ENSIPUG00000003836	ENSIPUG00000003824	HMGB2 (ENSIPUG00000003812)	ctc1 (ENSIPUG00000003776)	tfr2 (ENSIPUG00000003730) ##22	ENSIPUG00000003719	ENSIPUG00000003703	CNGA1 (ENSIPUG00000003687)	ENSIPUG00000003676	CORIN (ENSIPUG00000003632)	ENSIPUG00000003611	ENSIPUG00000003594	g3bp2 (ENSIPUG00000003561)	ENSIPUG00000003538	tec (ENSIPUG00000003515)	ENSIPUG00000003441	zgc:158659 (ENSIPUG00000003405)	MEPCE (ENSIPUG00000003387)	ENSIPUG00000003374	ENSIPUG00000003363
Cyprinoidei	ANCESTRAL SPECIES	154														ENSGT00940000153299.b	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT01060000253730	ENSGT00940000155128.a.b.a.a	ENSGT00940000165297.l	ENSGT01030000234558.A.a.a.a	ENSGT00940000165048.a	ENSGT01030000234579.A.a.e.a	ENSGT01030000234582.e.a	ENSGT01030000235000	ENSGT00940000175263	ENSGT00940000161400	ENSGT00940000167671	ENSGT01100000263484.C.b.b	ENSGT00940000160105	ENSGT00940000162467.a.b	ENSGT00990000204670
Cyprininae	ANCESTRAL SPECIES	433	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d.e	ENSGT00940000153173.a.e	ENSGT00940000154108.b.a.b.i.a	ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00940000157370.a.a	ENSGT00930000151042.w.c	ENSGT00950000182917.a.a.a.a.i	ENSGT00940000154706.rb.a.b.a.a	ENSGT00940000153942.b.k	ENSGT00390000005844.a.a	ENSGT00940000154737.d.g.b	ENSGT00940000154466.bc.a	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT01060000253730	ENSGT00940000155128.a.b.a.a	ENSGT00940000161400.o	ENSGT00940000167671.b	ENSGT01100000263484.C.b.b	ENSGT00940000160105.k.b	ENSGT00940000162467.a.b	ENSGT00950000182805.a.a.b.b.db.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	42								ENSCARG00000027132	PEX14 (ENSCARG00000027167)	ENSCARG00000027189	ENSCARG00000027204	ENSCARG00000027208	HMGB2 (ENSCARG00000027213)	ctc1 (ENSCARG00000027223)	ENSCARG00000027261	tfr2 (ENSCARG00000027273) ##22	ENSCARG00000027333	ENSCARG00000027323	ENSCARG00000027342	ENSCARG00000027348	ephb4b (ENSCARG00000027379)	SHISAL2A (ENSCARG00000027658)	gpx7 (ENSCARG00000027685)	ENSCARG00000027828	ENSCARG00000027878	NFATC2 (ENSCARG00000027944)	ATP9A (ENSCARG00000028035)	sall4 (ENSCARG00000029527)	ENSCARG00000029539	ENSCARG00000029550	AP1S2 (ENSCARG00000029579)
Goldfish	MODERN SPECIES	42	tec (ENSCARG00000046631)	ENSCARG00000047154	g3bp2b (ENSCARG00000047407)	ENSCARG00000047510	CORIN (ENSCARG00000047657)	aimp1b (ENSCARG00000047730)	sgms2b (ENSCARG00000018166)	ENSCARG00000018179	ENSCARG00000018208	ENSCARG00000018231	ENSCARG00000018517	ENSCARG00000018527	ENSCARG00000018538	ENSCARG00000018568	ctc1 (ENSCARG00000018571)	tfr2 (ENSCARG00000018584) ##22	ENSCARG00000018601	ENSCARG00000018621	ENSCARG00000018632	ENSCARG00000018639	ENSCARG00000018645	ENSCARG00000018678	prelid1b (ENSCARG00000018687)	ENSCARG00000018694	egr4 (ENSCARG00000018703)	VSTM2L (ENSCARG00000018716)	rprd1b (ENSCARG00000018721)	ENSCARG00000018746	ENSCARG00000018756	znf341 (ENSCARG00000018768)	itchb (ENSCARG00000018905)
Cyprininae_a	ANCESTRAL SPECIES	235	ENSGT00940000163785.a.a.a	ENSGT00530000064170.d.e	ENSGT00940000153173.a.e	ENSGT00940000154108.b.a.b.i.a	ENSGT00930000150973.B.e.a	ENSGT00940000154950.y.b	ENSGT00940000157370.a.a	ENSGT00930000151042.w.c	ENSGT00950000182917.a.a.a.a.i	ENSGT00940000154706.rb.a.b.a.a	ENSGT00390000005844.a.a.gd	ENSGT00940000154737.d.h	ENSGT00940000154737.d.g.b	ENSGT00940000154466.bc.a	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT01060000253730	ENSGT00940000155128.a.b.a.a	ENSGT00940000165297.l	ENSGT01030000234558.A.a.a.a	ENSGT01030000234535.A.h.a.a.b	ENSGT00940000165048.a	ENSGT01030000234579.A.a.e.a.b	ENSGT01030000234582.e.a	ENSGT01030000235000	ENSGT00940000175263	ENSGT00940000167671.a	ENSGT00940000160105.k.a	ENSGT00940000162467.a.b	ENSGT00950000182805.a.a.b.b.db.a
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1293					ENSSGRG00000007897	aimp1b (ENSSGRG00000007898)	sgms2b (ENSSGRG00000007915)	sgms2b (ENSSGRG00000007918)	sgms2b (ENSSGRG00000007922)	ENSSGRG00000007934	ENSSGRG00000007939	ENSSGRG00000007941	ENSSGRG00000007948	ENSSGRG00000007949	ENSSGRG00000007950	tfr2 (ENSSGRG00000007951) ##22	ENSSGRG00000007953	ENSSGRG00000007954	ENSSGRG00000007955
Golden-line barbel	MODERN SPECIES	1126													sh3gl2b (ENSSGRG00000035115)	ENSSGRG00000035113	ctc1 (ENSSGRG00000035112)	tfr2 (ENSSGRG00000035108) ##22	ENSSGRG00000035105	ENSSGRG00000035102	ENSSGRG00000035098	plod3 (ENSSGRG00000034944)	st8sia7.1 (ENSSGRG00000034922)	st8sia7.1 (ENSSGRG00000034921)	ENSSGRG00000034918	ENSSGRG00000034917	ENSSGRG00000034916
Common carp reference	MODERN SPECIES	11	ENSCCRG00000048551	ENSCCRG00000055026	ENSCCRG00000057075	ENSCCRG00000048558	ENSCCRG00000077092	ENSCCRG00000068672	sgms2b (ENSCCRG00000065287)	ENSCCRG00000012458	ENSCCRG00000026837	ENSCCRG00000027082	ENSCCRG00000042099	ENSCCRG00000082613	ENSCCRG00000070714	ENSCCRG00000061779	ctc1 (ENSCCRG00000037425)	tfr2 (ENSCCRG00000034466) ##22	ENSCCRG00000067082	ENSCCRG00000063167	ENSCCRG00000074434	ENSCCRG00000053142	plod3 (ENSCCRG00000082436)	st8sia7.1 (ENSCCRG00000068235)	st8sia7.1 (ENSCCRG00000059880)	st8sia7.1 (ENSCCRG00000065196)	atp1b2a (ENSCCRG00000073597)	ENSCCRG00000071226	ENSCCRG00000071092	ENSCCRG00000064303	ENSCCRG00000073172	ENSCCRG00000073689	ENSCCRG00000000693
Zebrafish	MODERN SPECIES	15	prelid1b (ENSDARG00000044169)	ENSDARG00000095843	ENSDARG00000095817	ccn1 (ENSDARG00000023062)	ENSDARG00000100797	aimp1b (ENSDARG00000036894)	sgms2b (ENSDARG00000036897)	ENSDARG00000099425	ENSDARG00000100962	ENSDARG00000077405	ENSDARG00000027381	ENSDARG00000039900	sh3gl2b (ENSDARG00000039901)	hmgb2b (ENSDARG00000053990)	ctc1 (ENSDARG00000070119)	tfr2 (ENSDARG00000103727) ##22	ENSDARG00000095861	ENSDARG00000095962	ENSDARG00000095963	plod3 (ENSDARG00000076317)	st8sia7.1 (ENSDARG00000054211)	ENSDARG00000054218	atp1b2a (ENSDARG00000099203)	MOGAT1 (ENSDARG00000086481)	ENSDARG00000054448	ENSDARG00000092799	zgc:85858 (ENSDARG00000039008)	ENSDARG00000116713	eno3 (ENSDARG00000039007)	pfn1 (ENSDARG00000088091)	ENSDARG00000099607
Clupeiformes	ANCESTRAL SPECIES	267											ENSGT00940000153993.A.i	ENSGT00560000077278.a	ENSGT00940000164913	ENSGT00940000154466.bc	ENSGT00390000011553	ENSGT01030000234598.a.a.b ##22	ENSGT00940000156074.a.a	ENSGT00940000157059	ENSGT00940000157103	ENSGT00390000013285.h	ENSGT00940000160368	ENSGT00390000011365.b.w.b	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT00940000155598.b.m.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042	ENSGT00940000158059.h	ENSGT00940000157370.a	ENSGT00990000205111	ENSGT00940000154950.y.b
Denticle herring	MODERN SPECIES		ino80b (ENSDCDG00000017257)	intu (ENSDCDG00000017259)	ENSDCDG00000017261	slc12a9 (ENSDCDG00000017263)	eif4e2rs1 (ENSDCDG00000017269)	ENSDCDG00000017274	actl6b (ENSDCDG00000017283)	KIF1C (ENSDCDG00000017321)	psmb6 (ENSDCDG00000019417)	trappc1 (ENSDCDG00000019420)	KCNAB3 (ENSDCDG00000019435)	MEPCE (ENSDCDG00000019529)	zgc:158659 (ENSDCDG00000019538)	HMGB2 (ENSDCDG00000019550)	ctc1 (ENSDCDG00000019558)	tfr2 (ENSDCDG00000019567) ##22	ENSDCDG00000019595	ENSDCDG00000019872	tec (ENSDCDG00000019913)	ENSDCDG00000020010	ENSDCDG00000020014	ENSDCDG00000020017	ENSDCDG00000000145	ENSDCDG00000000152	ENSDCDG00000000161	ENSDCDG00000000386	ENSDCDG00000000608	sgms2b (ENSDCDG00000000613)	ENSDCDG00000000617	ENSDCDG00000000622	zgc:172075 (ENSDCDG00000000628)
Atlantic herring	MODERN SPECIES	9	ppp1r35 (ENSCHAG00000017734)	ENSCHAG00000017728	ENSCHAG00000017675	atp1b2a (ENSCHAG00000017661)	ENSCHAG00000017654	plod3 (ENSCHAG00000014570)	ENSCHAG00000014508	KCTD11 (ENSCHAG00000014494)	ENSCHAG00000014488	ENSCHAG00000014360	MEPCE (ENSCHAG00000014353)	ENSCHAG00000014343	zgc:158659 (ENSCHAG00000014231)	HMGB2 (ENSCHAG00000014204)	ctc1 (ENSCHAG00000014178)	tfr2 (ENSCHAG00000014039) ##22	CNGA1 (ENSCHAG00000014018)	ENSCHAG00000013139	CORIN (ENSCHAG00000011548)	ENSCHAG00000011038	ENSCHAG00000009896	ENSCHAG00000009658	g3bp2b (ENSCHAG00000009636)	ENSCHAG00000009348	ENSCHAG00000008610	ENSCHAG00000008509	ENSCHAG00000008321	ENSCHAG00000008302	ENSCHAG00000008237	ENSCHAG00000008280	ENSCHAG00000008284
Spotted gar	MODERN SPECIES	658	PLD2 (ENSLOCG00000013467)	mink1 (ENSLOCG00000013479)	ENSLOCG00000013498	gnb2 (ENSLOCG00000013499)	actl6b (ENSLOCG00000013501)	ENSLOCG00000013513 ##11	ENSLOCG00000013521	ENSLOCG00000013524	ENSLOCG00000013526	ENSLOCG00000013530	atp1b2a (ENSLOCG00000013536)	gltpd2b (ENSLOCG00000013543)	chrne (ENSLOCG00000013546)	ENSLOCG00000013553	ENSLOCG00000013558	tfr2 (ENSLOCG00000013561) ##22	zgc:158659 (ENSLOCG00000013570)	ENSLOCG00000013580	mepcea (ENSLOCG00000013586)	mogat3b (ENSLOCG00000013592)	ENSLOCG00000013600	her5 (ENSLOCG00000013605)	ENSLOCG00000013610	ENSLOCG00000013611	ENSLOCG00000013630	eno3 (ENSLOCG00000013637)	znhit1 (ENSLOCG00000013646)	st8sia7.1 (ENSLOCG00000013650)	ENSLOCG00000013654	srrt (ENSLOCG00000013658)	zgc:85858 (ENSLOCG00000013662)
Reedfish	MODERN SPECIES	11	ENSECRG00000008318	TMEM107 (ENSECRG00000008289)	aurkb (ENSECRG00000008269)	VAMP2 (ENSECRG00000008250)	per1a (ENSECRG00000008214)	ENSECRG00000008141	ENSECRG00000008113	mogat3b (ENSECRG00000008097)	ENSECRG00000008088	ENSECRG00000008071	ENSECRG00000007893	ENSECRG00000007800	ENSECRG00000007785	ENSECRG00000007764	ENSECRG00000007707	tfr2 (ENSECRG00000007669) ##22	zgc:158659 (ENSECRG00000007639)	mepcea (ENSECRG00000007627)	ENSECRG00000007621	ENSECRG00000007568	ENSECRG00000007547	ENSECRG00000007537	ENSECRG00000007534	NYAP1 (ENSECRG00000007527)	ATP1B2 (ENSECRG00000007514)	gltpd2b (ENSECRG00000007506)	chrne (ENSECRG00000007476)	ENSECRG00000007452	ENSECRG00000007429	ENSECRG00000007408	ENSECRG00000007390
Elephant shark	MODERN SPECIES	2176														ENSCMIG00000014518	ENSCMIG00000014510	tfr2 (ENSCMIG00000014497) ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.a.b ##22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	1400																ENSEBUG00000014714 ##22	ENSEBUG00000015022	ENSEBUG00000000469
Hagfish	MODERN SPECIES	367							ENSEBUG00000009834	ENSEBUG00000009329	dldh (ENSEBUG00000001060)	cdc123 (ENSEBUG00000006430)	ENSEBUG00000014860	qrich1 (ENSEBUG00000010518)	ENSEBUG00000015889	ENSEBUG00000000539	cxxc1a (ENSEBUG00000009187)	ENSEBUG00000011617 ##22	gabarapa (ENSEBUG00000015205)	ccnl1a (ENSEBUG00000013214)	CHD3 (ENSEBUG00000008310)	cdk11b (ENSEBUG00000014440)	ENSEBUG00000009113	ENSEBUG00000016800	emg1 (ENSEBUG00000008287)	ENSEBUG00000007707	ddx19a (ENSEBUG00000001119)	ENSEBUG00000015498	ENSEBUG00000010165	gapdh (ENSEBUG00000006892)	ENSEBUG00000010741	ENSEBUG00000002976	ENSEBUG00000009530
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.b ##22
Gnathostomata	ANCESTRAL SPECIES	133												ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000000263	ENSGT00950000183070.a.a
Euteleostomi	ANCESTRAL SPECIES	66	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01080000257342.H	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000000263	ENSGT00950000183070.a.a
Actinopterygii	ANCESTRAL SPECIES	10	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.b	ENSGT00940000164867
Neopterygii	ANCESTRAL SPECIES	17	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000000263	ENSGT00950000183070.a.a.mb.a	ENSGT00980000198724
Osteoglossocephalai	ANCESTRAL SPECIES	234	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000154552	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.b
Clupeocephala	ANCESTRAL SPECIES	164	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a
Otomorpha	ANCESTRAL SPECIES	134	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00940000169190	ENSGT00940000153783.b.b.c.b	ENSGT00550000074917	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a
Otophysi	ANCESTRAL SPECIES	305											ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000158154	ENSGT00940000161593.b	ENSGT01030000234960	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00940000162889
Characiphysae	ANCESTRAL SPECIES	117	ENSGT01030000234590.A.b.a.a ##17	ENSGT00940000155866	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.C.f	ENSGT00950000182930.D	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00390000003197	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789.h	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000158154	ENSGT00940000161593.b	ENSGT01030000234960	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000157465.y	ENSGT01050000244840.A.b.a	ENSGT00390000015484.i
Channel catfish	MODERN SPECIES	1	hps3 (ENSIPUG00000002493)	FETUB (ENSIPUG00000002515)	si:ch211-284e20.8 (ENSIPUG00000002525)	ENSIPUG00000002538	ENSIPUG00000002551	si:ch211-262h13.5 (ENSIPUG00000002560)	KAL1 (ENSIPUG00000002572)	senp5 (ENSIPUG00000002594)	ENSIPUG00000002606	MCF2L2 (ENSIPUG00000002639)	ENSIPUG00000002731	b3gnt5a (ENSIPUG00000002742)	ect2 (ENSIPUG00000002773)	SPATA16 (ENSIPUG00000002870)	nlgn1 (ENSIPUG00000002896)	NAALADL2 (ENSIPUG00000002923) ##22	tbl1xr1 (ENSIPUG00000002968)	kcnmb2 (ENSIPUG00000003023)	zmat3 (ENSIPUG00000003043)	pik3ca (ENSIPUG00000003075)	ENSIPUG00000003137	ENSIPUG00000003155	CTBS (ENSIPUG00000003164)	rpf1 (ENSIPUG00000003197)	DNASE2B (ENSIPUG00000003238)	uox (ENSIPUG00000003262)	SAMD13 (ENSIPUG00000003300)	prkacb (ENSIPUG00000003317)	ttll7 (ENSIPUG00000003411)	adgrl2 (ENSIPUG00000003548)	Eltd1 (ENSIPUG00000003708)
Characiphysae_b	ANCESTRAL SPECIES	125	ENSGT00940000155866	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.C.f	ENSGT00950000182930.D	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00390000003197	ENSGT00950000183118.A.c.a	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789.h	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000158154	ENSGT00940000161593.b	ENSGT01030000234960	ENSGT00940000156442	ENSGT00390000018718	ENSGT00940000155941.A	ENSGT00390000008593.a	ENSGT00940000159253	ENSGT00940000157465.y	ENSGT01050000244840.A.b.a	ENSGT00390000015484.i
Characoidei	ANCESTRAL SPECIES	176	ENSGT00940000155866	ENSGT00390000015458	ENSGT00950000182930.A.b.k.b	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.C.f	ENSGT00950000182930.D	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00390000003197	ENSGT00950000183118.A.c.a	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789.g	ENSGT01030000234598.a.b ##22
Red-bellied piranha	MODERN SPECIES	479																ENSPNAG00000002334 ##22	ENSPNAG00000005873
Mexicana tetra	MODERN SPECIES	20	MINAR1 (ENSAMXG00000014109)	mthfs (ENSAMXG00000039756)	zfand6 (ENSAMXG00000037308)	fah (ENSAMXG00000020041)	ENSAMXG00000034421	arnt2 (ENSAMXG00000019978)	ABHD17C (ENSAMXG00000036243)	CEMIP (ENSAMXG00000019906)	mesd (ENSAMXG00000019872)	TLNRD1 (ENSAMXG00000024956)	IL16 (ENSAMXG00000019844)	STARD5 (ENSAMXG00000030373)	TMC3 (ENSAMXG00000019762)	ENSAMXG00000030346	nlgn1 (ENSAMXG00000016615)	ENSAMXG00000029328 ##22	ENSAMXG00000038812	ENSAMXG00000039859	sh3gl3a (ENSAMXG00000019716)	gjd6 (ENSAMXG00000040125)	ENSAMXG00000030980	lmnl3 (ENSAMXG00000019658)	ENSAMXG00000019613	saxo2 (ENSAMXG00000019583)	EFL1 (ENSAMXG00000019529)	mex3b (ENSAMXG00000033615)	ENSAMXG00000037496	ENSAMXG00000034494	snrpa1 (ENSAMXG00000038943)	selenos (ENSAMXG00000041122)	chsy1 (ENSAMXG00000002763)
Electric eel	MODERN SPECIES	23	hps3 (ENSEEEG00000023891)	si:ch211-284e20.8 (ENSEEEG00000023884)	ENSEEEG00000023879	ahsg1 (ENSEEEG00000023876)	si:ch211-262h13.5 (ENSEEEG00000023872)	anos1b (ENSEEEG00000023869)	senp5 (ENSEEEG00000023867)	ncbp2 (ENSEEEG00000023866)	PHKA2 (ENSEEEG00000023834)	b3gnt5a (ENSEEEG00000023826)	ENSEEEG00000023824	ect2 (ENSEEEG00000023822)	ENSEEEG00000023821	SPATA16 (ENSEEEG00000023820)	nlgn1 (ENSEEEG00000023818)	NAALADL2 (ENSEEEG00000023816) ##22	ENSEEEG00000023815	tbl1xr1a (ENSEEEG00000023798)	KCNMB1 (ENSEEEG00000023794)	ZMAT3 (ENSEEEG00000023792)	PIK3CA (ENSEEEG00000023753)	XXYLT1 (ENSEEEG00000023742)
Cyprinoidei	ANCESTRAL SPECIES	68	ENSGT00940000154406	ENSGT00390000013639	ENSGT00940000157057.e	ENSGT01050000244842.a.b.b.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a	ENSGT00940000156082.a.b	ENSGT00730000111116	ENSGT00940000156994	ENSGT00940000156972.d	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	125	ENSGT00390000013639.b	ENSGT00940000157057.e.b	ENSGT01050000244842.a.b.b.a.a.a.j	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a.h	ENSGT01100000263555.a.a.a.g	ENSGT00940000156082.a.b.d	ENSGT00730000111116.d	ENSGT00940000156994.i.a	ENSGT00940000156972.d.c	ENSGT00940000159676.a.b	ENSGT00940000161734.m.a	ENSGT00940000156299.`b	ENSGT00390000015332.a	ENSGT00940000155789.j	ENSGT01030000234598.a.b.a ##22	ENSGT01030000234812.c.b	ENSGT00940000153421.a.a.b.b	ENSGT00950000183039.B.b.c.a
Goldfish	MODERN SPECIES	29	ptp4a1 (ENSCARG00000030506)	lgsn (ENSCARG00000030482)	myom2a (ENSCARG00000029663)	ENSCARG00000027017	ITGB6 (ENSCARG00000026566)	ENSCARG00000026501	RBMS1 (ENSCARG00000026458)	psmd14 (ENSCARG00000026441)	TBR1 (ENSCARG00000026424)	SLC4A10 (ENSCARG00000019217)	b3gnt5a (ENSCARG00000019049)	ENSCARG00000017797	ect2 (ENSCARG00000017311)	nlgn1 (ENSCARG00000017156)	ENSCARG00000017136	NAALADL2 (ENSCARG00000017099) ##22	tbl1xr1a (ENSCARG00000016992)	ENSCARG00000016971	ENSCARG00000016963	ENSCARG00000016956	ENSCARG00000016948	tmcc1b (ENSCARG00000016940)	ENSCARG00000016899	ENSCARG00000016891	qrich1 (ENSCARG00000016859)	ENSCARG00000016854	twf2b (ENSCARG00000016840)	uba3 (ENSCARG00000016621)	tmf1 (ENSCARG00000016470)	EOGT (ENSCARG00000015985)	tafa4b (ENSCARG00000015954)
Cyprininae_a	ANCESTRAL SPECIES	85	ENSGT00390000013639.a	ENSGT00940000157057.e.a	ENSGT01050000244842.a.b.b.a.a.a.i	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a.g	ENSGT00940000156082.a.b.d	ENSGT00730000111116.d	ENSGT00940000156994.i.a	ENSGT00940000156972.d.c	ENSGT00940000161734.m.a	ENSGT00940000159676.a.b	ENSGT00940000156299.`b	ENSGT00390000015332.a	ENSGT00940000155789.j	ENSGT00940000160807	ENSGT01030000234598.a.b.a ##22	ENSGT01030000234812.c.b	ENSGT00940000153421.a.a.b.b	ENSGT00940000179131	ENSGT00390000016233.f.a.a	ENSGT00390000008947.c	ENSGT00390000018439.a	ENSGT00940000155864.a.b.h	ENSGT00550000074950.d	ENSGT00940000158502.c	ENSGT00940000158653.r	ENSGT00390000010170.a.a.d	ENSGT00940000162607.b.a	ENSGT00940000155644.b.a.a.b	ENSGT00940000156493.c	ENSGT00390000010697.c
Common carp reference	MODERN SPECIES	42	ITGB6 (ENSCCRG00000042073)	RBMS1 (ENSCCRG00000018544)	psmd14 (ENSCCRG00000016952)	TBR1 (ENSCCRG00000016945)	SLC4A10 (ENSCCRG00000001429)	ENSCCRG00000053804	ENSCCRG00000057772	b3gnt5a (ENSCCRG00000028797)	b3gnt5a (ENSCCRG00000075790)	ENSCCRG00000023746	ect2 (ENSCCRG00000016506)	SPATA16 (ENSCCRG00000068267)	ENSCCRG00000074320	nlgn1 (ENSCCRG00000065438)	ENSCCRG00000065771	NAALADL2 (ENSCCRG00000072267) ##22	ENSCCRG00000026908	tbl1xr1a (ENSCCRG00000022725)	ENSCCRG00000027328	arpc4l (ENSCCRG00000027321)	tada3l (ENSCCRG00000027317)	hmces (ENSCCRG00000074021)	rab7a (ENSCCRG00000027229)	slc25a26 (ENSCCRG00000034778)	LRIG1 (ENSCCRG00000020318)	ENSCCRG00000058315	kbtbd8 (ENSCCRG00000036688)	suclg2 (ENSCCRG00000061561)	TAFA1 (ENSCCRG00000063403)	tafa4b (ENSCCRG00000042785)	EOGT (ENSCCRG00000042858)
Golden-line barbel	MODERN SPECIES	1263																ENSSGRG00000029995 ##22
Cyprininae	ANCESTRAL SPECIES	374											ENSGT00940000161734.m.b	ENSGT00940000159676.a.a	ENSGT00940000156299.ab	ENSGT00390000015332.b	ENSGT00940000155789.i	ENSGT01030000234598.a.b.b ##22	ENSGT00940000153421.a.a.b.a	ENSGT00950000183039.B.b.c.b	ENSGT00390000016233.f.a.b	ENSGT00390000008947.d	ENSGT00390000018439.b	ENSGT00940000155864.a.b.g	ENSGT00550000074950.c	ENSGT00940000158502.d	ENSGT00940000158653.q	ENSGT00390000010170.a.a.c	ENSGT00940000162607.b.b	ENSGT00940000155644.b.a.a.a	ENSGT00940000156493.d	ENSGT00390000010697.d	ENSGT00550000074831.k.b
Goldfish	MODERN SPECIES	2	rab7a (ENSCARG00000067216)	hmces (ENSCARG00000067270)	tada3l (ENSCARG00000067281)	arpc4l (ENSCARG00000067293)	ENSCARG00000067305	tbl1xr1a (ENSCARG00000067314)	tada3l (ENSCARG00000067338)	arpc4l (ENSCARG00000067348)	ENSCARG00000067366	lgsn (ENSCARG00000067372)	myom2a (ENSCARG00000067424)	LY75 (ENSCARG00000067714)	ENSCARG00000068225	ITGB6 (ENSCARG00000068311)	nlgn1 (ENSCARG00000068331)	ENSCARG00000068341 ##22	kbtbd8 (ENSCARG00000068362)	suclg2 (ENSCARG00000068395)	TAFA1 (ENSCARG00000068763)	tafa4b (ENSCARG00000068766)	EOGT (ENSCARG00000001980)	tmf1 (ENSCARG00000002265)	uba3 (ENSCARG00000002838)	cishb (ENSCARG00000003156)	twf2b (ENSCARG00000003166)	rpusd4 (ENSCARG00000003191)	qrich1 (ENSCARG00000003204)	ENSCARG00000003209	ENSCARG00000003275	fezf2 (ENSCARG00000004002)	ENSCARG00000004023
Cyprininae_a	ANCESTRAL SPECIES	3	ENSGT00940000165071.a	ENSGT00940000155528.s.a.b	ENSGT00940000166036.b	ENSGT00940000160231.h	ENSGT00940000159037.n.a	ENSGT01030000234555.a.a.b.a.a.a.b.a	ENSGT00940000156082.a.b.c	ENSGT00730000111116.c	ENSGT00940000156994.i.b	ENSGT00940000156972.d.d	ENSGT00940000161734.m.b	ENSGT00940000159676.a.a	ENSGT00940000156299.ab	ENSGT00390000015332.b	ENSGT00940000155789.i	ENSGT01030000234598.a.b.b ##22	ENSGT00940000153421.a.a.b.a	ENSGT00950000183039.B.b.c.b	ENSGT00390000016233.f.a.b	ENSGT00390000008947.d	ENSGT00390000018439.b	ENSGT00940000155864.a.b.g	ENSGT00550000074950.c	ENSGT00940000158502.d	ENSGT00940000158653.q	ENSGT00390000010170.a.a.c	ENSGT00940000162607.b.b	ENSGT00940000155644.b.a.a.a	ENSGT00940000156493.d	ENSGT00390000010697.d	ENSGT00550000074831.k.b
Golden-line barbel	MODERN SPECIES	280																ENSSGRG00000052091 ##22	tbl1xr1a (ENSSGRG00000052100)	ENSSGRG00000052530	arpc4l (ENSSGRG00000052535)	tada3l (ENSSGRG00000052536)	ENSSGRG00000052537	hmces (ENSSGRG00000052539)	rab7a (ENSSGRG00000052540)	slc25a26 (ENSSGRG00000052541)	LRIG1 (ENSSGRG00000052543)	kbtbd8 (ENSSGRG00000052682)	suclg2 (ENSSGRG00000052684)	TAFA1 (ENSSGRG00000052686)	tafa4b (ENSSGRG00000052687)	EOGT (ENSSGRG00000052689)	tmf1 (ENSSGRG00000052691)
Common carp reference	MODERN SPECIES	13	ENSCCRG00000052359	ENSCCRG00000061898	ENSCCRG00000052347	ENSCCRG00000055514	ENSCCRG00000052338	ENSCCRG00000020060	ENSCCRG00000058881	ENSCCRG00000059900	psmd14 (ENSCCRG00000018488)	ENSCCRG00000032271	ENSCCRG00000058392	b3gnt5a (ENSCCRG00000023764)	ect2 (ENSCCRG00000023632)	SPATA16 (ENSCCRG00000044546)	nlgn1 (ENSCCRG00000071343)	NAALADL2 (ENSCCRG00000014762) ##22	ENSCCRG00000060333	tbl1xr1a (ENSCCRG00000015707)	ENSCCRG00000027217	arpc4l (ENSCCRG00000027232)	tada3l (ENSCCRG00000027248)	hmces (ENSCCRG00000027256)	rab7a (ENSCCRG00000034789)	slc25a26 (ENSCCRG00000081486)	LRIG1 (ENSCCRG00000031338)	kbtbd8 (ENSCCRG00000036400)	suclg2 (ENSCCRG00000064595)	TAFA1 (ENSCCRG00000055523)	tafa4b (ENSCCRG00000038567)	EOGT (ENSCCRG00000038591)	tmf1 (ENSCCRG00000040682)
Clupeiformes	ANCESTRAL SPECIES	13	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d	ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00940000156209	ENSGT00940000174981	ENSGT00940000156301.a.a	ENSGT00940000155190.bb.a	ENSGT00730000111209	ENSGT00940000158755	ENSGT00940000154568	ENSGT00940000157092	ENSGT00940000158648	ENSGT00940000157568	ENSGT00940000153947.B
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	71																ENSDCDG00000007176 ##22
Denticle herring	MODERN SPECIES	4	psmd1 (ENSDCDG00000035814)	ENSDCDG00000035811	ttc14 (ENSDCDG00000035805)	fxr1 (ENSDCDG00000035796)	dnajc19 (ENSDCDG00000035794)	ATP11B (ENSDCDG00000035773)	mccc1 (ENSDCDG00000035532)	ENSDCDG00000035446	ENSDCDG00000035443	eif4a2 (ENSDCDG00000035345)	rfc4 (ENSDCDG00000035307)	b3gnt5a (ENSDCDG00000035305)	ENSDCDG00000035290	ect2 (ENSDCDG00000035162)	nlgn1 (ENSDCDG00000035089)	NAALADL2 (ENSDCDG00000035081) ##22	tbl1xr1a (ENSDCDG00000035070)	ENSDCDG00000035062	ZMAT3 (ENSDCDG00000035057)	PIK3CA (ENSDCDG00000035054)	dnai4 (ENSDCDG00000035050)	SGIP1 (ENSDCDG00000035047)	PDE4B (ENSDCDG00000034434)	lepr (ENSDCDG00000034343)	DNAJC6 (ENSDCDG00000034333)	ak4 (ENSDCDG00000034327)	jak1 (ENSDCDG00000033348)	RAVER2 (ENSDCDG00000033278)	CACHD1 (ENSDCDG00000033270)	ROR1 (ENSDCDG00000033263)	pgm1 (ENSDCDG00000033253)
Atlantic herring	MODERN SPECIES	1	psmd1 (ENSCHAG00000020333)	ttc14 (ENSCHAG00000020170)	fxr1 (ENSCHAG00000019921)	dnajc19 (ENSCHAG00000019857)	ATP11B (ENSCHAG00000017464)	mccc1 (ENSCHAG00000014442)	ENSCHAG00000014326	ENSCHAG00000014316	eif4a2 (ENSCHAG00000013854)	rfc4 (ENSCHAG00000013734)	b3gnt5a (ENSCHAG00000013728)	MCF2L2 (ENSCHAG00000011010)	ect2 (ENSCHAG00000009113)	SPATA16 (ENSCHAG00000009031)	nlgn1 (ENSCHAG00000008823)	NAALADL2 (ENSCHAG00000008777) ##22	tbl1xr1a (ENSCHAG00000008316)	ENSCHAG00000008270	ZMAT3 (ENSCHAG00000008238)	PIK3CA (ENSCHAG00000008193)	dnai4 (ENSCHAG00000008129)	ENSCHAG00000008117	SGIP1 (ENSCHAG00000008030)	ENSCHAG00000008011	PDE4B (ENSCHAG00000007355)	lepr (ENSCHAG00000006835)	DNAJC6 (ENSCHAG00000006306)	ak4 (ENSCHAG00000006259)	jak1 (ENSCHAG00000001469)	ENSCHAG00000025843	CACHD1 (ENSCHAG00000025608)
Euteleosteomorpha	ANCESTRAL SPECIES	244										ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000156162.C	ENSGT00940000160614	ENSGT00940000154384	ENSGT00950000183189.a.b.a	ENSGT00390000013701	ENSGT00950000182865.b.a.b.b.a.a.a
Protacanthopterygii	ANCESTRAL SPECIES	144										ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00950000182899.C.a	ENSGT00940000156941	ENSGT00940000156162.C	ENSGT00390000017571	ENSGT00940000163206.b.a.a	ENSGT00950000182977.B.b.a.c.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT01050000244939.a.a.b.a.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	115	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000158681.b.d	ENSGT00530000064359.c.b	ENSGT00390000017913.`b.b.c.a	ENSGT00390000018395.c.b.b	ENSGT00940000163250.C	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.e.a ##22	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000155130.c	ENSGT00940000159504.r	ENSGT00940000157906.b	ENSGT00940000157458.k	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000163250.C.r	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.e.a ##22	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000155130.c	ENSGT00940000159504.r	ENSGT00940000157906.b	ENSGT00940000157458.k	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000163250.C.r	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.e.a ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g
Atlantic salmon	MODERN SPECIES	1	CEP350 (ENSSSAG00000070199)	qsox1 (ENSSSAG00000118746)	lhx4 (ENSSSAG00000070226)	acbd6 (ENSSSAG00000070228)	xpr1a (ENSSSAG00000070234)	ENSSSAG00000070482	k0841 (ENSSSAG00000070588)	ENSSSAG00000070601	ENSSSAG00000070655	ENSSSAG00000070659	ENSSSAG00000070452	b3gnt5a (ENSSSAG00000070761)	ect2 (ENSSSAG00000070771)	spata16 (ENSSSAG00000071025)	nlgn1 (ENSSSAG00000116812)	naaladl2 (ENSSSAG00000071148) ##22	tbl1xr1 (ENSSSAG00000071183)	ENSSSAG00000071241	ZMAT3 (ENSSSAG00000071245)	PIK3CA (ENSSSAG00000071257)	ENSSSAG00000071297	ENSSSAG00000038552	ENSSSAG00000094838	impact (ENSSSAG00000041439)	ENSSSAG00000103213	ENSSSAG00000121279	ENSSSAG00000108327	ENSSSAG00000097816	ENSSSAG00000041684	ENSSSAG00000041726	ENSSSAG00000042261
River trout	MODERN SPECIES	14	ENSSTUG00000047365	CEP350 (ENSSTUG00000047376)	qsox1 (ENSSTUG00000047496)	lhx4 (ENSSTUG00000047503)	acbd6 (ENSSTUG00000047508)	xpr1a (ENSSTUG00000047533)	sin3b (ENSSTUG00000047836)	haus5 (ENSSTUG00000047993)	ENSSTUG00000048049	ENSSTUG00000048079	rfc4 (ENSSTUG00000048085)	ENSSTUG00000048135	ect2 (ENSSTUG00000048325)	SPATA16 (ENSSTUG00000048820)	nlgn1 (ENSSTUG00000048855)	NAALADL2 (ENSSTUG00000048867) ##22	tbl1xr1a (ENSSTUG00000048955)	ENSSTUG00000048984	ZMAT3 (ENSSTUG00000048987)	PIK3CA (ENSSTUG00000048994)	ENSSTUG00000049010	ENSSTUG00000049015	mccc1 (ENSSTUG00000049028)	ATP11B (ENSSTUG00000049211)	impact (ENSSTUG00000049285)	ENSSTUG00000049291	ENSSTUG00000049298	dad1 (ENSSTUG00000049311)	TGM1 (ENSSTUG00000049328)	ENSSTUG00000049399	ENSSTUG00000049402
Huchen	MODERN SPECIES	2710																ENSHHUG00000047769 ##22
Salmoninae	ANCESTRAL SPECIES	491																ENSGT01030000234598.a.b.e.b ##22	ENSGT00940000153421.a.a.b.d	ENSGT00950000183039.B.b.c.d	ENSGT00730000111202.f	ENSGT00940000155531.a.a.m.b	ENSGT00950000182930.B.d	ENSGT00950000182899.C.a.d	ENSGT00940000156941.d	ENSGT00940000156162.C.c	ENSGT00390000017571.n	ENSGT00940000163206.b.a.a.e	ENSGT00950000182977.B.b.a.c.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00390000003324.db.a	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00550000075121
Huchen	MODERN SPECIES	1004													ENSHHUG00000047669	ENSHHUG00000047690	nlgn1 (ENSHHUG00000047691)	ENSHHUG00000047693 ##22
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00940000154690.d.b	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l	ENSGT00500000044895.q	ENSGT00940000159560.d	ENSGT00940000165447.d	ENSGT00550000074917.c	ENSGT00940000161734.o.a	ENSGT00940000159676.a.c	ENSGT00940000156299.cb	ENSGT00940000155789.gb.b	ENSGT01030000234598.a.b.e.b ##22	ENSGT00940000153421.a.a.b.d	ENSGT00950000183039.B.b.c.d	ENSGT00730000111202.f	ENSGT00940000155531.a.a.m.b	ENSGT00950000182930.B.d	ENSGT00950000182899.C.a.d	ENSGT00940000156941.d	ENSGT00940000156162.C.c	ENSGT00390000017571.n	ENSGT00940000163206.b.a.a.e	ENSGT00950000182977.B.b.a.c.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00390000003324.db.a	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00550000075121
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000154690.d.b	ENSGT00940000153838.b.f	ENSGT00940000155601.g.a	ENSGT00940000155130.d	ENSGT00940000159504.q	ENSGT00940000157906.a	ENSGT00940000157458.l	ENSGT00500000044895.q	ENSGT00940000159560.d	ENSGT00940000165447.d	ENSGT00550000074917.c	ENSGT00940000159676.a.c	ENSGT00940000161734.o.a	ENSGT00940000156299.cb	ENSGT00940000155789.gb.b	ENSGT01030000234598.a.b.e.b ##22	ENSGT00940000153421.a.a.b.d	ENSGT00950000183039.B.b.c.d	ENSGT00730000111202.f	ENSGT00950000182930.B.d	ENSGT00950000182899.C.a.d	ENSGT00940000156941.d	ENSGT00940000156162.C.c	ENSGT00390000017571.n	ENSGT00940000163206.b.a.a.e	ENSGT00950000182977.B.b.a.c.a	ENSGT01100000263533.b.b.a.b.a.b.a.b.b	ENSGT00390000003324.db.a	ENSGT01050000244939.a.a.b.a.b.h	ENSGT00550000075121	ENSGT00950000182879.a.b.a.a.b.b.b.b
Atlantic salmon	MODERN SPECIES	15	qsox1 (ENSSSAG00000071434)	lhx4 (ENSSSAG00000087689)	acbd6 (ENSSSAG00000071407)	xpr1a (ENSSSAG00000119365)	ENSSSAG00000071132	ENSSSAG00000092327	ENSSSAG00000087703	ENSSSAG00000083355	b3gnt5a (ENSSSAG00000071105)	ENSSSAG00000070692	ect2 (ENSSSAG00000068867)	ENSSSAG00000068835	ENSSSAG00000105961	nlgn1 (ENSSSAG00000071052)	ENSSSAG00000101389	NAALADL2 (ENSSSAG00000068817) ##22	tbl1xr1a (ENSSSAG00000068792)	ZMAT3 (ENSSSAG00000105821)	ENSSSAG00000082331	ENSSSAG00000068757	MCCA (ENSSSAG00000068531)	ENSSSAG00000068425	ENSSSAG00000068412	ENSSSAG00000089031	ENSSSAG00000068393	ENSSSAG00000107583	dad1 (ENSSSAG00000068386)	ENSSSAG00000067898	rabggta (ENSSSAG00000067852)	cyp2ad2 (ENSSSAG00000067784)	ENSSSAG00000084133
Salmoninae	ANCESTRAL SPECIES	115	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000158681.b.d	ENSGT00530000064359.c.b	ENSGT00390000017913.`b.b.c.a	ENSGT00390000018395.c.b.b	ENSGT00940000163250.C	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.e.a ##22	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00940000177341
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000159504.r	ENSGT00940000157906.b	ENSGT00940000157458.k	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000163250.C.r	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.e.a ##22	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00940000177341
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000155130.c	ENSGT00940000159504.r	ENSGT00940000157906.b	ENSGT00940000157458.k	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000163250.C.r	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00940000177341
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000155130.c	ENSGT00940000159504.r	ENSGT00940000157906.b	ENSGT00940000157458.k	ENSGT00500000044895.p	ENSGT00940000159560.c	ENSGT00940000165447.c	ENSGT00950000183104.B.a.b.a.b	ENSGT00940000163250.C.r	ENSGT00550000074917.d	ENSGT00940000161734.o.b	ENSGT00940000159676.a.d	ENSGT00940000156299.bb	ENSGT00390000015332	ENSGT00940000155789.gb.a	ENSGT01030000234598.a.b.f ##22	ENSGT00940000153421.a.a.b.c	ENSGT00950000183039.B.b.c.c	ENSGT00730000111202.e	ENSGT00940000155531.a.a.m.a	ENSGT00950000182930.B.c	ENSGT00950000182899.C.a.c	ENSGT00940000156941.c	ENSGT00940000156162.C.d	ENSGT00390000017571.m	ENSGT00940000163206.b.a.a.f	ENSGT01100000263533.b.b.a.b.a.b.a.b.a.b	ENSGT00940000165893	ENSGT00390000003324.db.b	ENSGT01050000244939.a.a.b.a.b.g	ENSGT00940000177341
Chinook salmon	MODERN SPECIES	29	qsox1 (ENSOTSG00005023513)	lhx4 (ENSOTSG00005023514)	acbd6 (ENSOTSG00005023515)	xpr1a (ENSOTSG00005023517)	sin3b (ENSOTSG00005023619)	haus5 (ENSOTSG00005024079)	ENSOTSG00005024080	ENSOTSG00005024155	rfc4 (ENSOTSG00005024159)	ENSOTSG00005024231	b3gnt5a (ENSOTSG00005024264)	ect2 (ENSOTSG00005024275)	ENSOTSG00005024464	SPATA16 (ENSOTSG00005024467)	nlgn1 (ENSOTSG00005024476)	NAALADL2 (ENSOTSG00005024491) ##22	tbl1xr1a (ENSOTSG00005024529)	ENSOTSG00005024530	ZMAT3 (ENSOTSG00005024531)	PIK3CA (ENSOTSG00005024533)	ENSOTSG00005024535	ENSOTSG00005024538	mccc1 (ENSOTSG00005024548)	ATP11B (ENSOTSG00005030961)	impact (ENSOTSG00005031054)	ENSOTSG00005031063	ENSOTSG00005031333	ENSOTSG00005031334	dad1 (ENSOTSG00005031335)	TGM1 (ENSOTSG00005031337)	ENSOTSG00005031477
Coho salmon	MODERN SPECIES	4	lhx4 (ENSOKIG00005020752)	qsox1 (ENSOKIG00005020707)	ACBD6 (ENSOKIG00005020682)	xpr1a (ENSOKIG00005020608)	sin3b (ENSOKIG00005019005)	ENSOKIG00005018807	ENSOKIG00005018698	ENSOKIG00005018690	RFC4 (ENSOKIG00005018589)	b3gnt5a (ENSOKIG00005018571)	ENSOKIG00005016005	ect2 (ENSOKIG00005015498)	SPATA16 (ENSOKIG00005015434)	nlgn1 (ENSOKIG00005015390)	ENSOKIG00005015372	NAALADL2 (ENSOKIG00005015359) ##22	tbl1xr1a (ENSOKIG00005015320)	ENSOKIG00005024232	ZMAT3 (ENSOKIG00005024220)	PIK3CA (ENSOKIG00005024126)	ENSOKIG00005024104	ENSOKIG00005024080	mccc1 (ENSOKIG00005022948)	ATP11B (ENSOKIG00005022159)	impact (ENSOKIG00005022072)	ENSOKIG00005022056	ENSOKIG00005022026	ENSOKIG00005021993	DAD1 (ENSOKIG00005021983)	TGM1 (ENSOKIG00005021912)	ENSOKIG00005021879
Rainbow trout	MODERN SPECIES	26	acbd6 (ENSOMYG00000021662)	xpr1a (ENSOMYG00000021697)	ENSOMYG00000021860	ENSOMYG00000023069	ENSOMYG00000023154	ENSOMYG00000023194	ENSOMYG00000023247	ENSOMYG00000023431	b3gnt5a (ENSOMYG00000023705)	ect2 (ENSOMYG00000023845)	SPATA16 (ENSOMYG00000023988)	ENSOMYG00000056083	nlgn1 (ENSOMYG00000024031)	ENSOMYG00000057319	ENSOMYG00000064559	NAALADL2 (ENSOMYG00000024109) ##22	tbl1xr1a (ENSOMYG00000024336)	ENSOMYG00000024518	ZMAT3 (ENSOMYG00000024536)	PIK3CA (ENSOMYG00000024649)	ENSOMYG00000024498	ENSOMYG00000025718	ENSOMYG00000030009	impact (ENSOMYG00000030139)	ENSOMYG00000030164	ENSOMYG00000030235	ENSOMYG00000030255	ENSOMYG00000030269	ENSOMYG00000030462	ENSOMYG00000075429	ENSOMYG00000030908
Northern pike	MODERN SPECIES	7	CEP350 (ENSELUG00000001632)	qsox1 (ENSELUG00000008878)	lhx4 (ENSELUG00000008898)	acbd6 (ENSELUG00000008918)	xpr1a (ENSELUG00000000341)	sin3b (ENSELUG00000009027)	haus5 (ENSELUG00000009076)	ENSELUG00000009129	ENSELUG00000009146	rfc4 (ENSELUG00000009193)	b3gnt5a (ENSELUG00000009219)	ENSELUG00000009544	ect2 (ENSELUG00000009790)	SPATA16 (ENSELUG00000009906)	nlgn1 (ENSELUG00000009996)	NAALADL2 (ENSELUG00000010049) ##22	tbl1xr1a (ENSELUG00000010098)	ENSELUG00000010113	ZMAT3 (ENSELUG00000010132)	PIK3CA (ENSELUG00000010177)	kng1 (ENSELUG00000010213)	ENSELUG00000010234	mccc1 (ENSELUG00000010299)	ATP11B (ENSELUG00000010730)	impact (ENSELUG00000010893)	ENSELUG00000010930	ENSELUG00000010941	ENSELUG00000025953	ENSELUG00000010973	ENSELUG00000010986	ENSELUG00000034277
Acanthomorphata	ANCESTRAL SPECIES	245			ENSGT00940000156539	ENSGT00390000002505	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000012078.a.a	ENSGT00940000155438.b	ENSGT00940000164495.c.b	ENSGT00730000111147	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00940000164616	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00950000182915.b.b.a.b.c.a	ENSGT00390000012078.a.a	ENSGT00940000155438.b	ENSGT00940000164495.c.b	ENSGT00730000111147	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b
Pinecone sodierfish	MODERN SPECIES	18	ENSMMDG00005019630	ENSMMDG00005019631	ENSMMDG00005019633	rad23ab (ENSMMDG00005019636)	EPS15L1 (ENSMMDG00005019641)	klf2a (ENSMMDG00005019644)	AP1M1 (ENSMMDG00005019655)	cherp (ENSMMDG00005019968)	ENSMMDG00005020329	rfc4 (ENSMMDG00005020333)	MCF2L2 (ENSMMDG00005020421)	b3gnt5a (ENSMMDG00005021189)	ect2 (ENSMMDG00005021208)	SPATA16 (ENSMMDG00005021273)	nlgn1 (ENSMMDG00005021277)	NAALADL2 (ENSMMDG00005021284) ##22	ENSMMDG00005021291	ENSMMDG00005021297	ENSMMDG00005021332	MEP1B (ENSMMDG00005021333)	mep1ba (ENSMMDG00005021337)	MEP1B (ENSMMDG00005021343)	ARHGAP39 (ENSMMDG00005021351)	ENSMMDG00005021356	rad54l (ENSMMDG00005021382)	st3gal3a (ENSMMDG00005021615)	ENSMMDG00005021620	ptprfa (ENSMMDG00005021676)	hyi (ENSMMDG00005021718)	ENSMMDG00005021727	DDX10 (ENSMMDG00005021736)
Percomorphaceae	ANCESTRAL SPECIES	128										ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.b.c.b	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000000263	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000008489	ENSGT00390000000568	ENSGT00390000005338	ENSGT00940000165232	ENSGT00390000012434	ENSGT00940000157546	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Pleuronectoidei	ANCESTRAL SPECIES	40										ENSGT00940000157546	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Turbot	MODERN SPECIES	3	ENSSMAG00000023931	ENSSMAG00000029753	ENSSMAG00000004158	ENSSMAG00000004170	ENSSMAG00000004187	ENSSMAG00000004205	ENSSMAG00000004230	ENSSMAG00000004293	ENSSMAG00000004336	ENSSMAG00000004476	ENSSMAG00000004533	ect2 (ENSSMAG00000004933)	ENSSMAG00000035003	ENSSMAG00000004148	nlgn1 (ENSSMAG00000004105)	NAALADL2 (ENSSMAG00000004025) ##22	ENSSMAG00000003967	ENSSMAG00000023002	ENSSMAG00000003915	ENSSMAG00000003891	ENSSMAG00000003868	ENSSMAG00000003829	ENSSMAG00000037404	slc1a7b (ENSSMAG00000003772)	ENSSMAG00000003752	scp2b (ENSSMAG00000003734)	cpt2 (ENSSMAG00000003691)	magoh (ENSSMAG00000003712)	ENSSMAG00000003681	uck2a (ENSSMAG00000028536)	tmco1 (ENSSMAG00000003525)
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000000263	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000008489	ENSGT00390000000568	ENSGT00390000005338	ENSGT00940000165232	ENSGT00390000012434	ENSGT00940000157546	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00940000178376	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Barramundi perch	MODERN SPECIES	295																ENSLCAG00010020150 ##22	ENSLCAG00010020155	ENSLCAG00010020164	mep1ba (ENSLCAG00010020166)	uhmk1 (ENSLCAG00010020168)	akr1a1b (ENSLCAG00010020171)	ENSLCAG00010020191	ENSLCAG00010020192
Seriola	ANCESTRAL SPECIES	21	ENSGT00940000163676	ENSGT00390000010047.g.a	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659	ENSGT00940000165232	ENSGT00390000012434	ENSGT00940000157546	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000005338
Greater amberjack	MODERN SPECIES	110	ENSSDUG00000022497	glulb (ENSSDUG00000022512)	pbx1b (ENSSDUG00000022517)	med8 (ENSSDUG00000022527)	aldh9a1a.1 (ENSSDUG00000022536)	tmco1 (ENSSDUG00000022551)	zgc:171480 (ENSSDUG00000022556)	ndufa11 (ENSSDUG00000022559)	slc5a9 (ENSSDUG00000022566)	rfc4 (ENSSDUG00000022576)	MCF2L2 (ENSSDUG00000022590)	b3gnt5a (ENSSDUG00000022604)	ect2 (ENSSDUG00000022620)	SPATA16 (ENSSDUG00000022669)	nlgn1 (ENSSDUG00000022680)	NAALADL2 (ENSSDUG00000022683) ##22	ENSSDUG00000022696	ENSSDUG00000022711	ENSSDUG00000000079	mep1ba (ENSSDUG00000000096)	MEP1B (ENSSDUG00000000179)	uhmk1 (ENSSDUG00000000226)	akr1a1b (ENSSDUG00000000280)	ENSSDUG00000000323	SHISAL2A (ENSSDUG00000000338)	slc1a7b (ENSSDUG00000000346)	PODN (ENSSDUG00000000409)	scp2b (ENSSDUG00000000422)	cpt2 (ENSSDUG00000000458)	magoh (ENSSDUG00000000474)	aatf (ENSSDUG00000000520)
Yellowtail amberjack	MODERN SPECIES	3180														SPATA16 (ENSSLDG00000001200)	nlgn1 (ENSSLDG00000001150)	NAALADL2 (ENSSLDG00000001094) ##22	ENSSLDG00000001060	ENSSLDG00000001053	mep1ba (ENSSLDG00000000921)	ENSSLDG00000000892	uhmk1 (ENSSLDG00000000833)	akr1a1b (ENSSLDG00000000788)	ENSSLDG00000000779	SHISAL2A (ENSSLDG00000000763)	slc1a7b (ENSSLDG00000000710)	PODN (ENSSLDG00000000637)	scp2b (ENSSLDG00000000629)	cpt2 (ENSSLDG00000000586)	magoh (ENSSLDG00000000574)	ENSSLDG00000000553	uck2a (ENSSLDG00000000517)
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Anabantoidei	ANCESTRAL SPECIES	33	ENSGT00940000154930.eb	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b
Climbing perch	MODERN SPECIES	17	ENSATEG00000027172	ENSATEG00000027909	ENSATEG00000007286	ENSATEG00000029607	CDH2 (ENSATEG00000007302)	ENSATEG00000028170	ENSATEG00000029321	ENSATEG00000007537	ENSATEG00000007575	b3gnt5a (ENSATEG00000007604)	ect2 (ENSATEG00000007614)	ENSATEG00000007727	SPATA16 (ENSATEG00000007733)	ENSATEG00000030109	NLGN1 (ENSATEG00000007830)	NAALADL2 (ENSATEG00000007892) ##22	ENSATEG00000025799	ENSATEG00000029088	ENSATEG00000007996	ENSATEG00000008046	ENSATEG00000019982	ENSATEG00000027368	ENSATEG00000008141	ENSATEG00000027763	ENSATEG00000026829	ENSATEG00000029623	ENSATEG00000008282	ENSATEG00000008313	ENSATEG00000008361	ENSATEG00000029931	slc1a7b (ENSATEG00000008396)
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000004121	ENSBSLG00000004115	ENSBSLG00000004112	ENSBSLG00000004054	ENSBSLG00000004021	b3gnt5a (ENSBSLG00000004013)	ENSBSLG00000004006	ENSBSLG00000003788	ect2 (ENSBSLG00000003210)	ENSBSLG00000003202	ect2 (ENSBSLG00000002935)	nlgn1 (ENSBSLG00000002625)	nlgn1 (ENSBSLG00000002576)	ENSBSLG00000002574	ENSBSLG00000002565	NAALADL2 (ENSBSLG00000002532) ##22	ENSBSLG00000002522	ENSBSLG00000002426	ENSBSLG00000002401	ENSBSLG00000002329	ENSBSLG00000002305	ctns (ENSBSLG00000002214)	TRAPPC8 (ENSBSLG00000001873)	lmnb2 (ENSBSLG00000001546)	commd2 (ENSBSLG00000001494)	ENSBSLG00000001492	lrrc40 (ENSBSLG00000001485)	ENSBSLG00000001477	phb2b (ENSBSLG00000001342)	pde6d (ENSBSLG00000001245)	rpl36 (ENSBSLG00000000854)
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000024310	ENSMAMG00000022106	cdh2 (ENSMAMG00000006737)	ENSMAMG00000006788	ENSMAMG00000006823	ENSMAMG00000006841	TTR (ENSMAMG00000006873)	ENSMAMG00000006918	ENSMAMG00000006970	ENSMAMG00000007016	b3gnt5a (ENSMAMG00000007064)	ect2 (ENSMAMG00000007079)	nlgn1 (ENSMAMG00000007147)	ENSMAMG00000025926	ENSMAMG00000024981	NAALADL2 (ENSMAMG00000007242) ##22	ENSMAMG00000007289	ENSMAMG00000024992	ENSMAMG00000007339	ENSMAMG00000007396	ENSMAMG00000007457	ENSMAMG00000007506	ENSMAMG00000007518	slc1a7b (ENSMAMG00000007534)	ENSMAMG00000007549	scp2b (ENSMAMG00000028717)	cpt2 (ENSMAMG00000007578)	magoh (ENSMAMG00000027700)	ENSMAMG00000007614	uck2a (ENSMAMG00000007620)	tmco1 (ENSMAMG00000007636)
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Tetraodontidae	ANCESTRAL SPECIES	93								ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019.i	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT01060000248556.B.l	ENSGT00390000003156.b	ENSGT00390000002659	ENSGT00390000011838	ENSGT00550000075010	ENSGT00940000155412.a.b
Fugu	MODERN SPECIES	12				ENSTRUG00000032083	cdh2 (ENSTRUG00000001621)	PLCD3 (ENSTRUG00000003439)	ENSTRUG00000032927	ttr (ENSTRUG00000021323)	b4galt6 (ENSTRUG00000005726)	rfc4 (ENSTRUG00000005511)	ENSTRUG00000003813	b3gnt5a (ENSTRUG00000005478)	ENSTRUG00000030222	ect2 (ENSTRUG00000002668)	nlgn1 (ENSTRUG00000001272)	NAALADL2 (ENSTRUG00000020432) ##22	ENSTRUG00000013251	mep1ba (ENSTRUG00000016750)	uhmk1 (ENSTRUG00000029224)	akr1a1b (ENSTRUG00000016722)	scly (ENSTRUG00000016717)	ndufa11 (ENSTRUG00000025577)	cpt2 (ENSTRUG00000016665)	cpt2 (ENSTRUG00000016647)	magoh (ENSTRUG00000019974)	tmco1 (ENSTRUG00000026552)	med8 (ENSTRUG00000016630)	dr1 (ENSTRUG00000016627)	zgc:109982 (ENSTRUG00000016623)	ENSTRUG00000026279	SLCO2A1 (ENSTRUG00000016587)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Ballan wrasse	MODERN SPECIES	2															ENSLBEG00000001638	ENSLBEG00000001545 ##22	ENSLBEG00000001488	ENSLBEG00000001449	mep1ba (ENSLBEG00000001386)	uhmk1 (ENSLBEG00000001341)	ENSLBEG00000001327	akr1a1b (ENSLBEG00000001298)	ENSLBEG00000001269	ENSLBEG00000001236	slc1a7b (ENSLBEG00000001170)	PODN (ENSLBEG00000001150)	scp2b (ENSLBEG00000001136)	magoh (ENSLBEG00000001113)	cpt2 (ENSLBEG00000001085)	aatf (ENSLBEG00000001051)	uck2a (ENSLBEG00000001017)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT01030000234624.b.b.c.a.b.d	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000153229.A.a.b	ENSGT00940000158019	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
European seabass	MODERN SPECIES	17	cdh2 (ENSDLAG00005008669)	ENSDLAG00005008504	ENSDLAG00005030275	ENSDLAG00005008474	TTR (ENSDLAG00005031018)	ENSDLAG00005008401	ENSDLAG00005034981	b3gnt5a (ENSDLAG00005032048)	ENSDLAG00005007937	ect2 (ENSDLAG00005007777)	SPATA16 (ENSDLAG00005007751)	nlgn1 (ENSDLAG00005006976)	ENSDLAG00005006946	ENSDLAG00005030076	ENSDLAG00005006928	NAALADL2 (ENSDLAG00005006909) ##22	ENSDLAG00005006879	ENSDLAG00005031380	ENSDLAG00005006865	ENSDLAG00005031597	ENSDLAG00005006741	ENSDLAG00005006676	ENSDLAG00005006509	ENSDLAG00005006475	ENSDLAG00005006471	slc1a7b (ENSDLAG00005006369)	ENSDLAG00005006348	scp2b (ENSDLAG00005006311)	cpt2 (ENSDLAG00005006297)	ENSDLAG00005006259	uck2a (ENSDLAG00005030874)
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005015772	ENSLCRG00005015775	ENSLCRG00005015778	ENSLCRG00005015779	ENSLCRG00005015780	ENSLCRG00005015781	ENSLCRG00005015782	ttr (ENSLCRG00005015784)	b4galt6 (ENSLCRG00005015788)	rfc4 (ENSLCRG00005015835)	MCF2L2 (ENSLCRG00005015840)	b3gnt5a (ENSLCRG00005015904)	ect2 (ENSLCRG00005015912)	ENSLCRG00005017524	nlgn1 (ENSLCRG00005017529)	NAALADL2 (ENSLCRG00005017588) ##22	ENSLCRG00005017591	ENSLCRG00005017594	ENSLCRG00005017620	ENSLCRG00005017625	ENSLCRG00005017626	HYKK (ENSLCRG00005017627)	ENSLCRG00005017628	kdm4b (ENSLCRG00005017631)	uhrf1 (ENSLCRG00005017717)	ENSLCRG00005018095	cluap1 (ENSLCRG00005018128)	slc5a5 (ENSLCRG00005018131)	ENSLCRG00005018183	B3GNT3 (ENSLCRG00005018980)	B3GNT3 (ENSLCRG00005018981)
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010007843	ENSSAUG00010007846	ENSSAUG00010007848	TUT4 (ENSSAUG00010007861)	gpx7 (ENSSAUG00010007871)	TUT4 (ENSSAUG00010007879)	ENSSAUG00010007893	ENSSAUG00010007898	ttr (ENSSAUG00010007903)	b4galt6 (ENSSAUG00010007906)	rfc4 (ENSSAUG00010007946)	ENSSAUG00010007959	b3gnt5a (ENSSAUG00010007972)	ect2 (ENSSAUG00010007978)	nlgn1 (ENSSAUG00010008013)	NAALADL2 (ENSSAUG00010008019) ##22	ENSSAUG00010008025	ENSSAUG00010008028	ENSSAUG00010008036	mep1ba (ENSSAUG00010008037)	uhmk1 (ENSSAUG00010008038)	akr1a1b (ENSSAUG00010008040)	ENSSAUG00010008385	ENSSAUG00010008389	SHISAL2A (ENSSAUG00010008392)	slc1a7b (ENSSAUG00010008398)	PODN (ENSSAUG00010008442)	ENSSAUG00010008445	cpt2 (ENSSAUG00010008447)	magoh (ENSSAUG00010008450)	ENSSAUG00010008451
Perciformes	ANCESTRAL SPECIES	8											ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Cottioidei	ANCESTRAL SPECIES	61	ENSGT00940000158019	ENSGT00940000157546	ENSGT00940000165232	ENSGT00390000012434	ENSGT00390000005338	ENSGT00390000000568	ENSGT00390000008489	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT01030000234624.b.b.c.a.b.d	ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00730000111147	ENSGT00390000000263	ENSGT00940000156968	ENSGT00940000175684	ENSGT00950000182916.b	ENSGT00390000006932	ENSGT00940000160141.e.b	ENSGT00530000063553.b.a	ENSGT00500000044869.a.b	ENSGT00940000165304
Lumpfish	MODERN SPECIES	19	zgc:171480 (ENSCLMG00005020087)	ndufa11 (ENSCLMG00005020083)	ctns (ENSCLMG00005020082)	TRAPPC8 (ENSCLMG00005020031)	commd2 (ENSCLMG00005020022)	lmnb2 (ENSCLMG00005019742)	rpl36 (ENSCLMG00005019733)	ENSCLMG00005019732	ENSCLMG00005019731	rfc4 (ENSCLMG00005019729)	b3gnt5a (ENSCLMG00005019725)	MCF2L2 (ENSCLMG00005019706)	ect2 (ENSCLMG00005019102)	ENSCLMG00005019099	nlgn1 (ENSCLMG00005019089)	NAALADL2 (ENSCLMG00005019084) ##22	cherp (ENSCLMG00005018806)	pde6d (ENSCLMG00005018785)	TTC39C (ENSCLMG00005018776)	zgc:103559 (ENSCLMG00005018775)	agxta (ENSCLMG00005018773)	dtymk (ENSCLMG00005018772)	atg4b (ENSCLMG00005018525)	boka (ENSCLMG00005018518)	FARP2 (ENSCLMG00005017175)	hdlbpa (ENSCLMG00005011652)	KIF1A (ENSCLMG00005008602)	scly (ENSCLMG00005008216)	ESPNL (ENSCLMG00005008214)	KLHL30 (ENSCLMG00005008189)	ENSCLMG00005008188
Perciformes_a	ANCESTRAL SPECIES	6											ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Pike perch	MODERN SPECIES	26											ENSSLUG00000000371	ENSSLUG00000000374	ENSSLUG00000000379	nlgn1 (ENSSLUG00000000387)	ENSSLUG00000000391	NAALADL2 (ENSSLUG00000000397) ##22	ENSSLUG00000000402	ENSSLUG00000000413	ENSSLUG00000000441	cherp (ENSSLUG00000000467)	klf2a (ENSSLUG00000000552)	EPS15L1 (ENSSLUG00000000648)	NQO1 (ENSSLUG00000000876)	rad23ab (ENSSLUG00000000882)	ENSSLUG00000000888	ARHGAP39 (ENSSLUG00000000897)	ENSSLUG00000000909	rad54l (ENSSLUG00000000942)	ENSSLUG00000000974	st3gal3a (ENSSLUG00000000977)	ENSSLUG00000000985
Channel bull blenny	MODERN SPECIES	18	ENSCGOG00000018032	ENSCGOG00000018038	ENSCGOG00000018085	LRRC24 (ENSCGOG00000018087)	dohh (ENSCGOG00000018088)	RSPH6A (ENSCGOG00000018090)	LONP1 (ENSCGOG00000018110)	ENSCGOG00000018461	rfc4 (ENSCGOG00000018469)	MCF2L2 (ENSCGOG00000018624)	b3gnt5a (ENSCGOG00000018754)	ect2 (ENSCGOG00000018779)	nlgn1 (ENSCGOG00000019532)	ENSCGOG00000019578	ENSCGOG00000019608	NAALADL2 (ENSCGOG00000019610) ##22	ENSCGOG00000019624	ENSCGOG00000020131	mep1ba (ENSCGOG00000020154)	uhmk1 (ENSCGOG00000020172)	akr1a1b (ENSCGOG00000020183)	ENSCGOG00000002626	ENSCGOG00000002652	ENSCGOG00000002677	PODN (ENSCGOG00000002771)	cpt2 (ENSCGOG00000002874)	magoh (ENSCGOG00000002885)	uck2a (ENSCGOG00000002942)	aldh9a1a.1 (ENSCGOG00000003054)	med8 (ENSCGOG00000003229)	pbx1b (ENSCGOG00000003298)
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Cichlidae	ANCESTRAL SPECIES	36											ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Midas cichlid	MODERN SPECIES	134																ENSACIG00000009974 ##22	ENSACIG00000010022	ENSACIG00000010061	mep1ba (ENSACIG00000010102)	uhmk1 (ENSACIG00000010132)	akr1a1b (ENSACIG00000010155)	ENSACIG00000010174	slc1a7b (ENSACIG00000010191)	PODN (ENSACIG00000010219)	scp2b (ENSACIG00000010251)
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00530000063558.A.c.b	ENSGT00940000159169.o	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b.a	ENSGT00390000007225	ENSGT00390000001663.m.a.b	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Nile tilapia	MODERN SPECIES	14	ENSONIG00000033887	ENSONIG00000028604	ENSONIG00000036367	ENSONIG00000019189	ENSONIG00000028785	ENSONIG00000019190	ENSONIG00000033562	ENSONIG00000038697	ENSONIG00000042553	ENSONIG00000037060	rfc4 (ENSONIG00000019192)	ENSONIG00000019195	b3gnt5a (ENSONIG00000021188)	ect2 (ENSONIG00000019196)	nlgn1 (ENSONIG00000029648)	NAALADL2 (ENSONIG00000019204) ##22	ENSONIG00000019205	ENSONIG00000030541	mep1ba (ENSONIG00000019207)	uhmk1 (ENSONIG00000019209)	akr1a1b (ENSONIG00000019210)	ENSONIG00000019213	SHISAL2A (ENSONIG00000028137)	slc1a7b (ENSONIG00000019216)	PODN (ENSONIG00000019220)	scp2b (ENSONIG00000032097)	cpt2 (ENSONIG00000019221)	magoh (ENSONIG00000019224)	aatf (ENSONIG00000021189)	uck2a (ENSONIG00000019225)	tmco1 (ENSONIG00000041289)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00530000063558.A.c.b	ENSGT00940000159169.o	ENSGT00390000005581.a	ENSGT00940000159606	ENSGT00940000158239.a.b	ENSGT00940000164897.a.b.a	ENSGT00390000007225	ENSGT00390000001663.m.a.b	ENSGT01100000263502.A.a.a.a.b.a.b	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.b	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539.y	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Lyretail cichlid	MODERN SPECIES	376	ENSNBRG00000012124	ENSNBRG00000012090	ENSNBRG00000012084	ENSNBRG00000012040	ENSNBRG00000012019	ENSNBRG00000012010	ENSNBRG00000011989	ENSNBRG00000011949	rfc4 (ENSNBRG00000011864)	ENSNBRG00000011833	b3gnt5a (ENSNBRG00000011825)	ENSNBRG00000011659	ect2 (ENSNBRG00000011603)	nlgn1 (ENSNBRG00000011573)	ENSNBRG00000011508	NAALADL2 (ENSNBRG00000011456) ##22	ENSNBRG00000011440	ENSNBRG00000011412	ENSNBRG00000011360	ENSNBRG00000011343	ENSNBRG00000011334
Haplochromini	ANCESTRAL SPECIES	16									ENSGT00950000183126.a.p.a.p.a.a.a	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00390000014380.h.b.b.i.b.a.a.a.b	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539.y	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000176997.a.a.b.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b
Burton s mouthbrooder	MODERN SPECIES	520															nlgn1 (ENSHBUG00000003467)	NAALADL2 (ENSHBUG00000003487) ##22	ENSHBUG00000003525	ENSHBUG00000003546	ENSHBUG00000003709
Haplochromini_A	ANCESTRAL SPECIES	15					ENSGT00940000176853.B.c.b	ENSGT00940000176853.B.d.b	ENSGT00950000183126.a.p.a.p.a.a.a	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00940000176853.B.d.a	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000170955.c	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00390000014380.h.b.b.i.b.a.a.a.b	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539.y	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000176997.a.a.b.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288
P. nyererei	MODERN SPECIES	318															nlgn1 (ENSPNYG00000022138)	ENSPNYG00000022121 ##22	ENSPNYG00000022107	ENSPNYG00000022077	ENSPNYG00000021978	mep1ba (ENSPNYG00000021927)	uhmk1 (ENSPNYG00000021906)	akr1a1b (ENSPNYG00000021893)	SHISAL2A (ENSPNYG00000021886)	slc1a7b (ENSPNYG00000021878)	PODN (ENSPNYG00000021860)	scp2b (ENSPNYG00000021843)	cpt2 (ENSPNYG00000021819)	magoh (ENSPNYG00000021829)	aatf (ENSPNYG00000021809)	uck2a (ENSPNYG00000021798)	tmco1 (ENSPNYG00000021786)
Haplochromini_B	ANCESTRAL SPECIES	10					ENSGT00940000176853.B.c.b	ENSGT00940000176853.B.d.b	ENSGT00950000183126.a.p.a.p.a.a.a	ENSGT00950000183126.a.p.a.p.a.b	ENSGT00940000176853.B.d.a	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000170955.c	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539.y	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000176997.a.a.b.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Eastern happy	MODERN SPECIES	14	ENSACLG00000001546	ENSACLG00000001533	ENSACLG00000001494	ENSACLG00000001432	ENSACLG00000001417	ENSACLG00000001397	rfc4 (ENSACLG00000001349)	b3gnt5a (ENSACLG00000001344)	ENSACLG00000001304	ect2 (ENSACLG00000001221)	ENSACLG00000001206	ENSACLG00000001096	nlgn1 (ENSACLG00000000999)	ENSACLG00000027252	ENSACLG00000027197	NAALADL2 (ENSACLG00000027187) ##22	ENSACLG00000027141	ENSACLG00000027119	MEP1B (ENSACLG00000027103)	uhmk1 (ENSACLG00000027096)	akr1a1b (ENSACLG00000027078)	ENSACLG00000027071	SHISAL2A (ENSACLG00000027060)	ENSACLG00000027056	slc1a7b (ENSACLG00000027035)	ENSACLG00000027026	PODN (ENSACLG00000027000)	scp2b (ENSACLG00000026985)	magoh (ENSACLG00000026978)	cpt2 (ENSACLG00000026971)	aatf (ENSACLG00000026969)
Zebra mbuna	MODERN SPECIES	1105	uhmk1 (ENSMZEG00005011160)	ENSMZEG00005011174	ENSMZEG00005011187	ENSMZEG00005011195	ENSMZEG00005011201	rfc4 (ENSMZEG00005011212)	ENSMZEG00005011257	b3gnt5a (ENSMZEG00005011363)	ect2 (ENSMZEG00005011398)	ENSMZEG00005011520	ENSMZEG00005011529	ENSMZEG00005011539	nlgn1 (ENSMZEG00005011548)	ENSMZEG00005011562	ENSMZEG00005011569	NAALADL2 (ENSMZEG00005011591) ##22	ENSMZEG00005011607	ENSMZEG00005011610	ENSMZEG00005011636	ENSMZEG00005011644	ENSMZEG00005011665	ENSMZEG00005011819	ENSMZEG00005011839	ENSMZEG00005011870	ENSMZEG00005011876	ENSMZEG00005011892	ENSMZEG00005011900	ENSMZEG00005011919	ENSMZEG00005011924	gli2b (ENSMZEG00005011934)	INHBB (ENSMZEG00005011953)
Pomacentridae	ANCESTRAL SPECIES	16									ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Bicolor damselfish	MODERN SPECIES	312														nlgn1 (ENSSPAG00000009524)	ENSSPAG00000009415	ENSSPAG00000009374 ##22
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000158512.a.k	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Spiny chromis	MODERN SPECIES	4																ENSAPOG00000016668 ##22	ENSAPOG00000016650	ENSAPOG00000016485	ENSAPOG00000016466	ENSAPOG00000016386	mep1ba (ENSAPOG00000016378)	uhmk1 (ENSAPOG00000016327)	akr1a1b (ENSAPOG00000016274)	ENSAPOG00000016262	SHISAL2A (ENSAPOG00000016256)	slc1a7b (ENSAPOG00000016232)	PODN (ENSAPOG00000016186)	scp2b (ENSAPOG00000016166)	cpt2 (ENSAPOG00000016151)	magoh (ENSAPOG00000016124)	uck2a (ENSAPOG00000016090)
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00940000155060.C.a.b	ENSGT00390000005462	ENSGT00390000018402	ENSGT00550000074980	ENSGT00390000011620.a.a.a	ENSGT00940000156453.b	ENSGT00510000049120	ENSGT00940000156037.a.e	ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000158512.a.k	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Clown anemonefish	MODERN SPECIES	3458															nlgn1 (ENSAOCG00000003344)	ENSAOCG00000003364 ##22	ENSAOCG00000003385
Orange clownfish	MODERN SPECIES	11	SZT2 (ENSAPEG00000022110)	ENSAPEG00000022211	ENSAPEG00000022230	ENSAPEG00000022236	ENSAPEG00000022261	aqp4 (ENSAPEG00000022269)	cdh2 (ENSAPEG00000022295)	rfc4 (ENSAPEG00000022344)	ENSAPEG00000022377	MCF2L2 (ENSAPEG00000022398)	b3gnt5a (ENSAPEG00000022611)	ENSAPEG00000022621	ect2 (ENSAPEG00000022667)	ENSAPEG00000022902	nlgn1 (ENSAPEG00000022920)	NAALADL2 (ENSAPEG00000022988) ##22	ENSAPEG00000023012	ENSAPEG00000023019	ENSAPEG00000023086	ENSAPEG00000023132	ENSAPEG00000023164	uhmk1 (ENSAPEG00000023193)	akr1a1b (ENSAPEG00000023243)	ENSAPEG00000023268	SHISAL2A (ENSAPEG00000023276)	slc1a7b (ENSAPEG00000023281)	PODN (ENSAPEG00000023307)	scp2b (ENSAPEG00000023367)	cpt2 (ENSAPEG00000023387)	magoh (ENSAPEG00000023401)	aatf (ENSAPEG00000023422)
Atherinomorphae	ANCESTRAL SPECIES	7										ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Oryzias	ANCESTRAL SPECIES	5	ENSGT00530000063187.B.c	ENSGT00390000004835	ENSGT00940000155091.eb.a	ENSGT00940000154079.a	ENSGT00950000182951.B	ENSGT01060000248544.a.a.b.a.b	ENSGT00410000029447	ENSGT00940000162061.a.a	ENSGT00940000164279.b	ENSGT00940000160907.k	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.a	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659
Oryzias_b	ANCESTRAL SPECIES	26	ENSGT00390000004835	ENSGT00940000154079.a	ENSGT00940000155091.eb.a	ENSGT00950000182951.B	ENSGT01060000248544.a.a.b.a.b	ENSGT00410000029447	ENSGT00940000162061.a.a	ENSGT00940000164279.b	ENSGT00940000160907.k	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.a	ENSGT00940000155789	ENSGT00940000178259	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01100000263552.f.b.f.b	ENSGT00940000163762.a.b	ENSGT00390000011838	ENSGT00940000163309	ENSGT00390000002659
Indian medaka	MODERN SPECIES	13	ralgps2 (ENSOMEG00000001815)	angptl1a (ENSOMEG00000001794)	fam20b (ENSOMEG00000001788)	faslg (ENSOMEG00000001780)	si:dkey-86e18.1 (ENSOMEG00000001778)	jun (ENSOMEG00000001040)	prdx6 (ENSOMEG00000001764)	plpp6 (ENSOMEG00000001761)	ENSOMEG00000001757	si:dkey-239i20.4 (ENSOMEG00000001750)	ENSOMEG00000001744	si:dkey-239i20.2 (ENSOMEG00000001737)	ENSOMEG00000001731	nlgn1 (ENSOMEG00000001727)	ENSOMEG00000001724	ENSOMEG00000001719 ##22	ENSOMEG00000001708	ENSOMEG00000001699	uhmk1 (ENSOMEG00000001693)	mep1ba (ENSOMEG00000001686)	akr1a1b (ENSOMEG00000001676)	ENSOMEG00000001666	SHISAL2A (ENSOMEG00000001651)	slc1a7b (ENSOMEG00000001647)	PODN (ENSOMEG00000001636)	scp2b (ENSOMEG00000001629)	ENSOMEG00000001622	ENSOMEG00000001618	pbx1b (ENSOMEG00000001614)	med8 (ENSOMEG00000001606)	aldh9a1a.1 (ENSOMEG00000001600)
Javanese ricefish	MODERN SPECIES	18	coa7 (ENSOJAG00000006029)	angptl1a (ENSOJAG00000006006)	ralgps2 (ENSOJAG00000004865)	fam20b (ENSOJAG00000004758)	faslg (ENSOJAG00000004754)	si:dkey-86e18.1 (ENSOJAG00000004749)	jun (ENSOJAG00000004730)	prdx6 (ENSOJAG00000004686)	plpp6 (ENSOJAG00000004678)	ENSOJAG00000004383	si:dkey-239i20.4 (ENSOJAG00000004249)	ENSOJAG00000004185	si:dkey-239i20.2 (ENSOJAG00000004041)	nlgn1 (ENSOJAG00000002989)	ENSOJAG00000002810	ENSOJAG00000002774 ##22	ENSOJAG00000002742	ENSOJAG00000002728	mep1ba (ENSOJAG00000002689)	uhmk1 (ENSOJAG00000002650)	akr1a1b (ENSOJAG00000002555)	ENSOJAG00000002526	SHISAL2A (ENSOJAG00000002518)	slc1a7b (ENSOJAG00000002478)	PODN (ENSOJAG00000002443)	ENSOJAG00000002387	med8 (ENSOJAG00000002355)	aldh9a1a.1 (ENSOJAG00000001848)	tmco1 (ENSOJAG00000001561)	aatf (ENSOJAG00000001555)	magoh (ENSOJAG00000001552)
Oryzias_a	ANCESTRAL SPECIES	24	ENSGT00530000063187.B.c	ENSGT00390000004835	ENSGT00940000155091.eb.a	ENSGT00940000154079.a	ENSGT00950000182951.B	ENSGT01060000248544.a.a.b.a.b	ENSGT00410000029447	ENSGT00940000162061.a.a	ENSGT00940000164279.b	ENSGT00940000160907.k	ENSGT00940000160836.d.b.a.b.f.b	ENSGT00940000160836.d.b.b	ENSGT00940000160836.d.b.a.a	ENSGT00940000160836.d.a	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT00940000177801	ENSGT00940000163676	ENSGT00940000163762.a.b	ENSGT00390000011838
Chinese medaka	MODERN SPECIES	1098	zyg11 (ENSOSIG00000007950)	coa7 (ENSOSIG00000007945)	angptl1a (ENSOSIG00000007944)	ralgps2 (ENSOSIG00000006261)	fam20b (ENSOSIG00000006250)	faslg (ENSOSIG00000006247)	jun (ENSOSIG00000006246)	si:dkey-86e18.1 (ENSOSIG00000006243)	prdx6 (ENSOSIG00000006242)	plpp6 (ENSOSIG00000006241)	ENSOSIG00000006145	ENSOSIG00000005895	si:dkey-239i20.2 (ENSOSIG00000005886)	ENSOSIG00000005880	ENSOSIG00000005878	ENSOSIG00000005869 ##22	ENSOSIG00000005863	ENSOSIG00000005781	CHCHD4 (ENSOSIG00000005775)	mep1ba (ENSOSIG00000005767)	ENSOSIG00000005764	uhmk1 (ENSOSIG00000005761)	akr1a1b (ENSOSIG00000005742)	ENSOSIG00000005733	SHISAL2A (ENSOSIG00000005730)	ENSOSIG00000005729	PODN (ENSOSIG00000005724)	ENSOSIG00000005718	ZNF648 (ENSOSIG00000005716)	ENSOSIG00000005713	ENSOSIG00000005711
Japanese Medaka HdrR	MODERN SPECIES	18	faslg (ENSORLG00000024837)	si:dkey-86e18.1 (ENSORLG00000028970)	jun (ENSORLG00000027558)	prdx6 (ENSORLG00000014530)	plpp6 (ENSORLG00000027650)	ENSORLG00000014515	si:dkey-239i20.4 (ENSORLG00000014511)	ENSORLG00000024596	si:dkey-239i20.2 (ENSORLG00000014502)	ENSORLG00000023514	nlgn1 (ENSORLG00000014412)	ENSORLG00000027481	ENSORLG00000028160	ENSORLG00000030217	ENSORLG00000027251	NAALADL2 (ENSORLG00000024562) ##22	ENSORLG00000014398	ENSORLG00000014375	ENSORLG00000029775	mep1ba (ENSORLG00000014358)	uhmk1 (ENSORLG00000014340)	akr1a1b (ENSORLG00000014322)	ENSORLG00000021802	ENSORLG00000026316	slc1a7b (ENSORLG00000014274)	PODN (ENSORLG00000014255)	scp2b (ENSORLG00000029625)	ENSORLG00000022404	ENSORLG00000014225	med8 (ENSORLG00000014187)	aldh9a1a.1 (ENSORLG00000014167)
Cyprinodontiformes	ANCESTRAL SPECIES	7										ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Cyprinodontoidei	ANCESTRAL SPECIES	10										ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000159676.a	ENSGT00940000161734	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000178684	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a
Poeciliinae	ANCESTRAL SPECIES	7										ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Poecilia	ANCESTRAL SPECIES	1										ENSGT00940000155981.h	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Guppy	MODERN SPECIES	456	babam1 (ENSPREG00000012619)	ENSPREG00000012646	nr2f6b (ENSPREG00000012663)	ENSPREG00000012673	cdh2 (ENSPREG00000012689)	ENSPREG00000012720	ENSPREG00000012730	ENSPREG00000012743	ENSPREG00000012752	rfc4 (ENSPREG00000012765)	MCF2L2 (ENSPREG00000012824)	b3gnt5a (ENSPREG00000012896)	ENSPREG00000012898	ect2 (ENSPREG00000012918)	nlgn1 (ENSPREG00000013053)	NAALADL2 (ENSPREG00000013101) ##22	ENSPREG00000013129	ENSPREG00000013199	ENSPREG00000013217	mep1ba (ENSPREG00000013230)	uhmk1 (ENSPREG00000013295)	akr1a1b (ENSPREG00000013325)	ENSPREG00000013352	SHISAL2A (ENSPREG00000013373)	slc1a7b (ENSPREG00000013428)	PODN (ENSPREG00000013443)	scp2b (ENSPREG00000013465)	cpt2 (ENSPREG00000013481)	magoh (ENSPREG00000013501)	aatf (ENSPREG00000013521)	uck2a (ENSPREG00000013526)
NAME_6	ANCESTRAL SPECIES	134														ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b	ENSGT00940000160740	ENSGT00940000154327.b.f	ENSGT01060000248556.B	ENSGT00390000003156.b	ENSGT00390000000288	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000002659
Amazon molly	MODERN SPECIES	316													ect2 (ENSPFOG00000015657)	ENSPFOG00000015755	nlgn1 (ENSPFOG00000015769)	NAALADL2 (ENSPFOG00000023256) ##22	ENSPFOG00000023752	ENSPFOG00000024546	ENSPFOG00000015853	ENSPFOG00000015896	mep1ba (ENSPFOG00000015911)	uhmk1 (ENSPFOG00000015923)	akr1a1b (ENSPFOG00000015949)	ENSPFOG00000015976	SHISAL2A (ENSPFOG00000015989)	slc1a7b (ENSPFOG00000016000)	PODN (ENSPFOG00000016080)	scp2b (ENSPFOG00000023245)	cpt2 (ENSPFOG00000016121)	magoh (ENSPFOG00000016141)	aatf (ENSPFOG00000020853)
Platyfish	MODERN SPECIES	23	tmem38a (ENSXMAG00000029557)	smim7 (ENSXMAG00000022934)	ENSXMAG00000000726	ENSXMAG00000022740	ENSXMAG00000000724	ENSXMAG00000021727	cdh2 (ENSXMAG00000007020)	ENSXMAG00000012241	rfc4 (ENSXMAG00000007006)	b3gnt5a (ENSXMAG00000020362)	ENSXMAG00000021663	MCF2L2 (ENSXMAG00000024616)	ect2 (ENSXMAG00000028187)	nlgn1 (ENSXMAG00000004731)	ENSXMAG00000022892	NAALADL2 (ENSXMAG00000004767) ##22	ENSXMAG00000016105	KCNMB2 (ENSXMAG00000029640)	mep1ba (ENSXMAG00000016069)	uhmk1 (ENSXMAG00000016056)	akr1a1b (ENSXMAG00000016033)	ENSXMAG00000016024	SHISAL2A (ENSXMAG00000016021)	slc1a7b (ENSXMAG00000003122)	PODN (ENSXMAG00000003118)	scp2b (ENSXMAG00000003116)	cpt2 (ENSXMAG00000006291)	magoh (ENSXMAG00000006297)	aatf (ENSXMAG00000020205)	uck2a (ENSXMAG00000006302)	tmco1 (ENSXMAG00000006311)
NAME_4	ANCESTRAL SPECIES	598															ENSGT00940000155789	ENSGT01030000234598.a.b ##22
Sheepshead minnow	MODERN SPECIES	384															nlgn1 (ENSCVAG00000009370)	ENSCVAG00000009349 ##22	ENSCVAG00000009317
Cod	MODERN SPECIES	3	ENSGMOG00000008662	ENSGMOG00000027059	AP1M1 (ENSGMOG00000008680)	ENSGMOG00000008654	ENSGMOG00000008598	ENSGMOG00000016351	b3gnt5a (ENSGMOG00000027060)	ect2 (ENSGMOG00000012674)	nlgn1 (ENSGMOG00000006291)	ENSGMOG00000032790	ENSGMOG00000036245	ENSGMOG00000032827	ENSGMOG00000027611	ENSGMOG00000036634	ENSGMOG00000029318	NAALADL2 (ENSGMOG00000033608) ##22	ENSGMOG00000034887	ENSGMOG00000013578	ENSGMOG00000034640	ENSGMOG00000017718	ENSGMOG00000017738	ENSGMOG00000002087	ENSGMOG00000028574	ENSGMOG00000029420	ENSGMOG00000001071	ENSGMOG00000027434	mcm3l (ENSGMOG00000016488)	ENSGMOG00000004169	ENSGMOG00000003154	ENSGMOG00000016645	ENSGMOG00000016633
Osteoglossiformes	ANCESTRAL SPECIES	170	ENSGT01050000244937.a.b.b	ENSGT00940000153386.A	ENSGT00940000174617	ENSGT00390000013701	ENSGT00950000183189.a.b.a.n	ENSGT00940000154552.j	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000153783.b.b.d.g	ENSGT00550000074917	ENSGT00940000161734	ENSGT00940000159676.a	ENSGT00940000156299.gb	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000165367.a	ENSGT00940000158024.B.f
Asian bonytongue	MODERN SPECIES	23	ttc14 (ENSSFOG00015008195)	FXR1 (ENSSFOG00015008103)	ATP11B (ENSSFOG00015007895)	ENSSFOG00015007841	mccc1 (ENSSFOG00015007784)	ENSSFOG00015007762	ENSSFOG00015007642	eif4a2 (ENSSFOG00015007526)	rfc4 (ENSSFOG00015007485)	ENSSFOG00015007390	b3gnt5a (ENSSFOG00015007473)	ECT2 (ENSSFOG00015007297)	ENSSFOG00015026188	NLGN1 (ENSSFOG00015007276)	NLGN1 (ENSSFOG00015025005)	NAALADL2 (ENSSFOG00015007188) ##22	gngt2a (ENSSFOG00015028680)	ENSSFOG00015007035	ZMAT3 (ENSSFOG00015006984)	PIK3CA (ENSSFOG00015006930)	ENSSFOG00015006899	ENSSFOG00015029741	EPHB3 (ENSSFOG00015006847)	P3H2 (ENSSFOG00015006816)	tp63 (ENSSFOG00015006778)	tprg1 (ENSSFOG00015006763)	bcl6aa (ENSSFOG00015006752)	smx5 (ENSSFOG00015029476)	INPP5D (ENSSFOG00015006629)	GPR17 (ENSSFOG00015006609)	ENSSFOG00015006354
P. kingsleyae	MODERN SPECIES	40	ttll7 (ENSPKIG00000022327)	prkacbb (ENSPKIG00000022518)	samd13 (ENSPKIG00000022571)	uox (ENSPKIG00000022605)	DNASE2B (ENSPKIG00000022628)	DCUN1D1 (ENSPKIG00000022649)	mccc1 (ENSPKIG00000022682)	ENSPKIG00000022732	ENSPKIG00000022749	eif4a2 (ENSPKIG00000022776)	rfc4 (ENSPKIG00000022814)	ENSPKIG00000022874	b3gnt5a (ENSPKIG00000023024)	ECT2 (ENSPKIG00000023048)	NLGN1 (ENSPKIG00000023138)	NAALADL2 (ENSPKIG00000023179) ##22	ENSPKIG00000023255	ENSPKIG00000023347	ZMAT3 (ENSPKIG00000023370)	PIK3CA (ENSPKIG00000023411)	ENSPKIG00000023471	EPHB3 (ENSPKIG00000023681)	hykk.2 (ENSPKIG00000023907)	ENSPKIG00000023923	NMUR1 (ENSPKIG00000023945)	ENSPKIG00000023958	ENSPKIG00000023969	ENSPKIG00000023990	TSC22D2 (ENSPKIG00000024026)	pfn2a (ENSPKIG00000024034)	rnf13 (ENSPKIG00000024044)
Spotted gar	MODERN SPECIES	652	dnajc19 (ENSLOCG00000000624)	sox2 (ENSLOCG00000017346)	ATP11B (ENSLOCG00000000659)	dcun1d1 (ENSLOCG00000000735)	ENSLOCG00000000758	mccc1 (ENSLOCG00000000778)	ENSLOCG00000000806	ENSLOCG00000000828	eif4a2 (ENSLOCG00000000847)	rfc4 (ENSLOCG00000000876)	ENSLOCG00000000896	b3gnt5a (ENSLOCG00000017371)	ect2 (ENSLOCG00000000941)	SPATA16 (ENSLOCG00000000975)	nlgn1 (ENSLOCG00000000991)	NAALADL2 (ENSLOCG00000001022) ##22	ENSLOCG00000001063	kcnmb2 (ENSLOCG00000001089)	ZMAT3 (ENSLOCG00000001108)	PIK3CA (ENSLOCG00000001119)	KCNMB3 (ENSLOCG00000001177)	mfn1b (ENSLOCG00000001195)	gnb4b (ENSLOCG00000001216)	actl6a (ENSLOCG00000001256)	mrpl47 (ENSLOCG00000001289)	ndufb5 (ENSLOCG00000001304)	usp13 (ENSLOCG00000001321)	PEX5L (ENSLOCG00000001351)	pde6d (ENSLOCG00000001371)	PHB2 (ENSLOCG00000001389)	ptmaa (ENSLOCG00000001413)
Reedfish	MODERN SPECIES	10	ENSECRG00000012422	ATP11B (ENSECRG00000012239)	dcun1d1 (ENSECRG00000012170)	ENSECRG00000012146	mccc1 (ENSECRG00000012124)	ENSECRG00000012114	ENSECRG00000012094	eif4a2 (ENSECRG00000012026)	rfc4 (ENSECRG00000011992)	b3gnt5a (ENSECRG00000011979)	MCF2L2 (ENSECRG00000011952)	ect2 (ENSECRG00000011854)	SPATA16 (ENSECRG00000011817)	ENSECRG00000011785	NLGN1 (ENSECRG00000011771)	NAALADL2 (ENSECRG00000011757) ##22	ENSECRG00000011747	tbl1xr1a (ENSECRG00000011681)	kcnmb2 (ENSECRG00000011622)	ZMAT3 (ENSECRG00000011580)	PIK3CA (ENSECRG00000011540)	KCNMB3 (ENSECRG00000011514)	MFN1 (ENSECRG00000011447)	GNB4 (ENSECRG00000011379)	actl6a (ENSECRG00000011329)	mrpl47 (ENSECRG00000011293)	ndufb5 (ENSECRG00000011270)	ENSECRG00000011258	PEX5L (ENSECRG00000008160)	ENSECRG00000008135	ENSECRG00000008130
Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Amniota	ANCESTRAL SPECIES	13	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Sauria	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00390000006293.td	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b.u	ENSGT00950000183039.B.b.a	ENSGT00390000006293.td	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b.u	ENSGT00950000183039.B.b.a	ENSGT00390000006293.td	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Mainland tiger snake	MODERN SPECIES		ENSNSUG00000002603	ENSNSUG00000002609	PLD1 (ENSNSUG00000002615)	TMEM212 (ENSNSUG00000002795)	FNDC3B (ENSNSUG00000002814)	ENSNSUG00000003787	GHSR (ENSNSUG00000003794)	TNFSF10 (ENSNSUG00000003810)	NCEH1 (ENSNSUG00000003814)	ENSNSUG00000003817	ENSNSUG00000003831	SPATA16 (ENSNSUG00000003835)	ENSNSUG00000003858	ENSNSUG00000003867	NLGN1 (ENSNSUG00000003879)	NAALADL2 (ENSNSUG00000003894) ##22	TBL1XR1 (ENSNSUG00000003899)	KCNMB2 (ENSNSUG00000003916)	ENSNSUG00000003919	ZMAT3 (ENSNSUG00000003923)	PIK3CA (ENSNSUG00000003932)	ENSNSUG00000004425	ZNF639 (ENSNSUG00000004427)	MFN1 (ENSNSUG00000004432)	GNB4 (ENSNSUG00000004440)	NIFK (ENSNSUG00000004538)	ACTL6A (ENSNSUG00000004551)	MRPL47 (ENSNSUG00000004553)	NDUFB5 (ENSNSUG00000004556)	USP13 (ENSNSUG00000004559)	PEX5L (ENSNSUG00000004565)
Eastern brown snake	MODERN SPECIES	29	EIF5A2 (ENSPTXG00000013346)	SLC2A2 (ENSPTXG00000013345)	ENSPTXG00000013344	TNIK (ENSPTXG00000013343)	PLD1 (ENSPTXG00000013341)	TMEM212 (ENSPTXG00000013340)	ENSPTXG00000013339	FNDC3B (ENSPTXG00000013338)	GHSR (ENSPTXG00000013337)	TNFSF10 (ENSPTXG00000013335)	NCEH1 (ENSPTXG00000013334)	ENSPTXG00000013332	ENSPTXG00000013331	SPATA16 (ENSPTXG00000013329)	NLGN1 (ENSPTXG00000013325)	NAALADL2 (ENSPTXG00000013319) ##22	TBL1XR1 (ENSPTXG00000013314)	KCNMB2 (ENSPTXG00000017809)	ZMAT3 (ENSPTXG00000017808)	PIK3CA (ENSPTXG00000017806)	ZNF639 (ENSPTXG00000017805)	MFN1 (ENSPTXG00000017761)	GNB4 (ENSPTXG00000017756)	NIFK (ENSPTXG00000017754)	ACTL6A (ENSPTXG00000017752)	MRPL47 (ENSPTXG00000017751)	NDUFB5 (ENSPTXG00000017750)	USP13 (ENSPTXG00000017659)	PEX5L (ENSPTXG00000017655)	TTC14 (ENSPTXG00000017654)	ENSPTXG00000017653
Indian cobra	MODERN SPECIES	3	RPL22L1 (ENSNNAG00000011816)	EIF5A2 (ENSNNAG00000011836)	SLC2A2 (ENSNNAG00000011868)	TNIK (ENSNNAG00000012451)	ENSNNAG00000016239	PLD1 (ENSNNAG00000016268)	ENSNNAG00000016338	TMEM212 (ENSNNAG00000016341)	FNDC3B (ENSNNAG00000016356)	GHSR (ENSNNAG00000016421)	TNFSF10 (ENSNNAG00000016427)	NCEH1 (ENSNNAG00000016440)	ECT2 (ENSNNAG00000016490)	SPATA16 (ENSNNAG00000016632)	NLGN1 (ENSNNAG00000016645)	NAALADL2 (ENSNNAG00000016653) ##22	TBL1XR1 (ENSNNAG00000016658)	KCNMB2 (ENSNNAG00000016680)	ENSNNAG00000007595	ENSNNAG00000007631	ZMAT3 (ENSNNAG00000007645)	PIK3CA (ENSNNAG00000007680)	ZNF639 (ENSNNAG00000007836)	MFN1 (ENSNNAG00000007861)	GNB4 (ENSNNAG00000007920)	NIFK (ENSNNAG00000007941)	ACTL6A (ENSNNAG00000007971)	MRPL47 (ENSNNAG00000008025)	NDUFB5 (ENSNNAG00000008239)	USP13 (ENSNNAG00000008293)	PEX5L (ENSNNAG00000008347)
Lizard	MODERN SPECIES	2	ENSACAG00000038881	NCEH1 (ENSACAG00000016420)	ENSACAG00000044039	ECT2 (ENSACAG00000016429)	ENSACAG00000041861	ENSACAG00000040927	SPATA16 (ENSACAG00000016524)	ENSACAG00000039420	ENSACAG00000034608	ENSACAG00000038799	ENSACAG00000035896	ENSACAG00000037640	ENSACAG00000039077	NLGN1 (ENSACAG00000016546)	ENSACAG00000041682	NAALADL2 (ENSACAG00000029348) ##22	ENSACAG00000034977	ENSACAG00000037636	TBL1XR1 (ENSACAG00000013442)	ENSACAG00000041605	ENSACAG00000040731	ENSACAG00000036596	KCNMB2 (ENSACAG00000005012)	ENSACAG00000042133	ZMAT3 (ENSACAG00000005005)	PIK3CA (ENSACAG00000004872)	ZNF639 (ENSACAG00000044413)	MFN1 (ENSACAG00000004702)	GNB4 (ENSACAG00000004667)	ENSACAG00000004655	ENSACAG00000044517
Laterata	ANCESTRAL SPECIES		ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000011515	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Argentine black and white tegu	MODERN SPECIES	21	CLDN11 (ENSSMRG00000023651)	SLC7A14 (ENSSMRG00000023650)	RPL22L1 (ENSSMRG00000023649)	EIF5A2 (ENSSMRG00000023648)	SLC2A2 (ENSSMRG00000023647)	TNIK (ENSSMRG00000023646)	PLD1 (ENSSMRG00000023645)	TMEM212 (ENSSMRG00000023644)	FNDC3B (ENSSMRG00000023642)	GHSR (ENSSMRG00000023641)	TNFSF10 (ENSSMRG00000023640)	NCEH1 (ENSSMRG00000023639)	ECT2 (ENSSMRG00000023637)	SPATA16 (ENSSMRG00000023636)	NLGN1 (ENSSMRG00000023635)	NAALADL2 (ENSSMRG00000023630) ##22	TBL1XR1 (ENSSMRG00000023626)	KCNMB2 (ENSSMRG00000023624)	ZMAT3 (ENSSMRG00000023623)	PIK3CA (ENSSMRG00000023622)	ENSSMRG00000023621	ZNF639 (ENSSMRG00000023620)	MFN1 (ENSSMRG00000023619)	ENSSMRG00000023618	ENSSMRG00000023617	NIFK (ENSSMRG00000023616)	ACTL6A (ENSSMRG00000023614)	MRPL47 (ENSSMRG00000023613)	NDUFB5 (ENSSMRG00000023612)	USP13 (ENSSMRG00000023611)	PEX5L (ENSSMRG00000023610)
Common wall lizard	MODERN SPECIES	13	SLC2A2 (ENSPMRG00000007748)	TNIK (ENSPMRG00000007931)	PLD1 (ENSPMRG00000009383)	ENSPMRG00000009393	TMEM212 (ENSPMRG00000009396)	FNDC3B (ENSPMRG00000009401)	ENSPMRG00000009413	GHSR (ENSPMRG00000009415)	TNFSF10 (ENSPMRG00000009429)	NCEH1 (ENSPMRG00000009443)	ENSPMRG00000009447	ECT2 (ENSPMRG00000009462)	SPATA16 (ENSPMRG00000009535)	ENSPMRG00000009548	NLGN1 (ENSPMRG00000002947)	NAALADL2 (ENSPMRG00000002959) ##22	ENSPMRG00000002988	ENSPMRG00000002994	ENSPMRG00000003002	ENSPMRG00000003008	ENSPMRG00000003019	ENSPMRG00000003026	TBL1XR1 (ENSPMRG00000003048)	ENSPMRG00000003094	ENSPMRG00000003104	KCNMB2 (ENSPMRG00000003126)	ENSPMRG00000003152	ENSPMRG00000003165	ENSPMRG00000003168	PIK3CA (ENSPMRG00000003186)	ENSPMRG00000003204
tuatara	MODERN SPECIES	940															ENSSPUG00000010072	NAALADL2 (ENSSPUG00000009951) ##22	ENSSPUG00000009922
Archelosauria	ANCESTRAL SPECIES	11	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00960000190572	ENSGT00390000015010
Aves	ANCESTRAL SPECIES	13	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Neognathae	ANCESTRAL SPECIES	9	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Golden eagle	MODERN SPECIES	1	CLDN11 (ENSACCG00020003314)	SLC7A14 (ENSACCG00020003323)	RPL22L1 (ENSACCG00020003347)	EIF5A2 (ENSACCG00020003373)	SLC2A2 (ENSACCG00020003447)	TNIK (ENSACCG00020003590)	PLD1 (ENSACCG00020003751)	FNDC3B (ENSACCG00020004229)	GHSR (ENSACCG00020004449)	TNFSF10 (ENSACCG00020004457)	NCEH1 (ENSACCG00020004468)	ENSACCG00020004485	ENSACCG00020004492	SPATA16 (ENSACCG00020004502)	NLGN1 (ENSACCG00020004515)	NAALADL2 (ENSACCG00020004541) ##22	TBL1XR1 (ENSACCG00020004568)	KCNMB2 (ENSACCG00020004589)	ENSACCG00020004603	ZMAT3 (ENSACCG00020004611)	PIK3CA (ENSACCG00020004627)	ZNF639 (ENSACCG00020004651)	MFN1 (ENSACCG00020004658)	GNB4 (ENSACCG00020004669)	ACTL6A (ENSACCG00020004677)	MRPL47 (ENSACCG00020004710)	NDUFB5 (ENSACCG00020000356)	USP13 (ENSACCG00020000413)	PEX5L (ENSACCG00020000831)	TTC14 (ENSACCG00020000953)	CCDC39 (ENSACCG00020000987)
Kakapo	MODERN SPECIES	25	CLDN11 (ENSSHBG00005016841)	SLC7A14 (ENSSHBG00005016849)	RPL22L1 (ENSSHBG00005016856)	EIF5A2 (ENSSHBG00005016863)	SLC2A2 (ENSSHBG00005016871)	TNIK (ENSSHBG00005016893)	PLD1 (ENSSHBG00005016963)	FNDC3B (ENSSHBG00005017778)	GHSR (ENSSHBG00005017789)	TNFSF10 (ENSSHBG00005017794)	NCEH1 (ENSSHBG00005017804)	ENSSHBG00005017809	ENSSHBG00005017821	SPATA16 (ENSSHBG00005017829)	NLGN1 (ENSSHBG00005017842)	NAALADL2 (ENSSHBG00005017848) ##22	TBL1XR1 (ENSSHBG00005017856)	KCNMB2 (ENSSHBG00005017869)	ZMAT3 (ENSSHBG00005017878)	PIK3CA (ENSSHBG00005000694)	ZNF639 (ENSSHBG00005000719)	MFN1 (ENSSHBG00005010431)	GNB4 (ENSSHBG00005010477)	ACTL6A (ENSSHBG00005010515)	MRPL47 (ENSSHBG00005010546)	NDUFB5 (ENSSHBG00005010573)	USP13 (ENSSHBG00005010631)	PEX5L (ENSSHBG00005010862)	TTC14 (ENSSHBG00005012064)	CCDC39 (ENSSHBG00005012103)	FXR1 (ENSSHBG00005012156)
Passeriformes	ANCESTRAL SPECIES	9	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Medium ground finch	MODERN SPECIES	12	SKIL (ENSGFOG00000012186)	CLDN11 (ENSGFOG00000012182)	SLC7A14 (ENSGFOG00000012176)	RPL22L1 (ENSGFOG00000012171)	EIF5A2 (ENSGFOG00000012165)	SLC2A2 (ENSGFOG00000012156)	ENSGFOG00000012152	TNIK (ENSGFOG00000011417)	PLD1 (ENSGFOG00000008326)	FNDC3B (ENSGFOG00000008069)	GHSR (ENSGFOG00000008037)	TNFSF10 (ENSGFOG00000008030)	NCEH1 (ENSGFOG00000007873)	ECT2 (ENSGFOG00000007813)	NLGN1 (ENSGFOG00000007784)	NAALADL2 (ENSGFOG00000007762) ##22	TBL1XR1 (ENSGFOG00000007746)	KCNMB2 (ENSGFOG00000007709)	ZMAT3 (ENSGFOG00000007697)	PIK3CA (ENSGFOG00000007668)	ZNF639 (ENSGFOG00000007659)	MFN1 (ENSGFOG00000007632)	GNB4 (ENSGFOG00000007624)	ACTL6A (ENSGFOG00000007543)	MRPL47 (ENSGFOG00000007503)	NDUFB5 (ENSGFOG00000007487)	USP13 (ENSGFOG00000007465)	PEX5L (ENSGFOG00000007428)	ENSGFOG00000007366	CCDC39 (ENSGFOG00000007337)	FXR1 (ENSGFOG00000005246)
Passeroidea	ANCESTRAL SPECIES	13	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Zebra finch	MODERN SPECIES	31	SKIL (ENSTGUG00000010953)	SLC7A14 (ENSTGUG00000010946)	RPL22L1 (ENSTGUG00000010942)	EIF5A2 (ENSTGUG00000028575)	SLC2A2 (ENSTGUG00000010920)	ENSTGUG00000025095	TNIK (ENSTGUG00000010875)	PLD1 (ENSTGUG00000010857)	ENSTGUG00000018991	FNDC3B (ENSTGUG00000010824)	GHSR (ENSTGUG00000010823)	TNFSF10 (ENSTGUG00000010819)	NCEH1 (ENSTGUG00000025400)	ECT2 (ENSTGUG00000010794)	NLGN1 (ENSTGUG00000021670)	NAALADL2 (ENSTGUG00000010781) ##22	TBL1XR1 (ENSTGUG00000010773)	KCNMB2 (ENSTGUG00000026184)	ZMAT3 (ENSTGUG00000027964)	PIK3CA (ENSTGUG00000010736)	ZNF639 (ENSTGUG00000027191)	MFN1 (ENSTGUG00000010693)	GNB4 (ENSTGUG00000021021)	ACTL6A (ENSTGUG00000010657)	MRPL47 (ENSTGUG00000010649)	NDUFB5 (ENSTGUG00000010639)	USP13 (ENSTGUG00000010622)	PEX5L (ENSTGUG00000010602)	TTC14 (ENSTGUG00000010592)	CCDC39 (ENSTGUG00000010586)	FXR1 (ENSTGUG00000010560)
Common canary	MODERN SPECIES	10	PRKCI (ENSSCAG00000010021)	SKIL (ENSSCAG00000010028)	CLDN11 (ENSSCAG00000010031)	SLC7A14 (ENSSCAG00000010035)	RPL22L1 (ENSSCAG00000010041)	EIF5A2 (ENSSCAG00000010045)	SLC2A2 (ENSSCAG00000010050)	TNIK (ENSSCAG00000010287)	PLD1 (ENSSCAG00000012001)	FNDC3B (ENSSCAG00000012019)	GHSR (ENSSCAG00000012030)	TNFSF10 (ENSSCAG00000012032)	NCEH1 (ENSSCAG00000012047)	ECT2 (ENSSCAG00000012156)	NLGN1 (ENSSCAG00000012186)	NAALADL2 (ENSSCAG00000012244) ##22	TBL1XR1 (ENSSCAG00000012275)	KCNMB2 (ENSSCAG00000012297)	ZMAT3 (ENSSCAG00000012302)	PIK3CA (ENSSCAG00000012311)	ZNF639 (ENSSCAG00000012318)	MFN1 (ENSSCAG00000012323)	GNB4 (ENSSCAG00000012330)	ACTL6A (ENSSCAG00000012338)	MRPL47 (ENSSCAG00000012343)	NDUFB5 (ENSSCAG00000012346)	USP13 (ENSSCAG00000012352)	PEX5L (ENSSCAG00000012363)	TTC14 (ENSSCAG00000012380)	CCDC39 (ENSSCAG00000012392)	FXR1 (ENSSCAG00000012440)
Flycatcher	MODERN SPECIES	28	PHC3 (ENSFALG00000008610)	PRKCI (ENSFALG00000008601)	SKIL (ENSFALG00000008592)	CLDN11 (ENSFALG00000025881)	SLC7A14 (ENSFALG00000008583)	EIF5A2 (ENSFALG00000008571)	SLC2A2 (ENSFALG00000008548)	TNIK (ENSFALG00000008495)	PLD1 (ENSFALG00000008477)	FNDC3B (ENSFALG00000008467)	GHSR (ENSFALG00000008461)	TNFSF10 (ENSFALG00000026290)	NCEH1 (ENSFALG00000008448)	ECT2 (ENSFALG00000008443)	NLGN1 (ENSFALG00000008434)	NAALADL2 (ENSFALG00000008425) ##22	TBL1XR1 (ENSFALG00000008416)	KCNMB2 (ENSFALG00000008411)	ZMAT3 (ENSFALG00000008403)	PIK3CA (ENSFALG00000008395)	ZNF639 (ENSFALG00000027836)	MFN1 (ENSFALG00000008386)	GNB4 (ENSFALG00000008376)	ACTL6A (ENSFALG00000008369)	MRPL47 (ENSFALG00000008365)	NDUFB5 (ENSFALG00000025849)	USP13 (ENSFALG00000008348)	PEX5L (ENSFALG00000008333)	TTC14 (ENSFALG00000008319)	CCDC39 (ENSFALG00000008311)	FXR1 (ENSFALG00000008301)
Great tit	MODERN SPECIES	29	SKIL (ENSPMJG00000004794)	CLDN11 (ENSPMJG00000004790)	SLC7A14 (ENSPMJG00000004785)	RPL22L1 (ENSPMJG00000004755)	EIF5A2 (ENSPMJG00000004754)	SLC2A2 (ENSPMJG00000004751)	TNIK (ENSPMJG00000004723)	PLD1 (ENSPMJG00000004681)	ENSPMJG00000004658	FNDC3B (ENSPMJG00000003059)	GHSR (ENSPMJG00000003056)	TNFSF10 (ENSPMJG00000003047)	NCEH1 (ENSPMJG00000003040)	ECT2 (ENSPMJG00000003020)	NLGN1 (ENSPMJG00000002987)	NAALADL2 (ENSPMJG00000002940) ##22	TBL1XR1 (ENSPMJG00000002841)	KCNMB2 (ENSPMJG00000002756)	ZMAT3 (ENSPMJG00000002709)	PIK3CA (ENSPMJG00000002701)	ZNF639 (ENSPMJG00000002695)	MFN1 (ENSPMJG00000002684)	GNB4 (ENSPMJG00000002659)	ACTL6A (ENSPMJG00000002638)	MRPL47 (ENSPMJG00000002630)	NDUFB5 (ENSPMJG00000002618)	USP13 (ENSPMJG00000002592)	PEX5L (ENSPMJG00000002525)	TTC14 (ENSPMJG00000002481)	CCDC39 (ENSPMJG00000002417)	FXR1 (ENSPMJG00000002237)
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Anatidae	ANCESTRAL SPECIES	31	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Pink-footed goose	MODERN SPECIES	72	RPL22L1 (ENSABRG00000010670)	EIF5A2 (ENSABRG00000010662)	ENSABRG00000010660	SLC2A2 (ENSABRG00000010641)	ENSABRG00000010633	TNIK (ENSABRG00000002344)	PLD1 (ENSABRG00000001362)	TMEM212 (ENSABRG00000001341)	FNDC3B (ENSABRG00000001285)	GHSR (ENSABRG00000001233)	TNFSF10 (ENSABRG00000001164)	NCEH1 (ENSABRG00000001148)	ECT2 (ENSABRG00000001001)	SPATA16 (ENSABRG00000000786)	NLGN1 (ENSABRG00000022582)	NAALADL2 (ENSABRG00000022575) ##22	TBL1XR1 (ENSABRG00000022555)	KCNMB2 (ENSABRG00000022545)	ZMAT3 (ENSABRG00000022537)	PIK3CA (ENSABRG00000022535)	ZNF639 (ENSABRG00000022534)	MFN1 (ENSABRG00000022532)	GNB4 (ENSABRG00000022531)	ACTL6A (ENSABRG00000022528)	MRPL47 (ENSABRG00000022527)	NDUFB5 (ENSABRG00000022526)	USP13 (ENSABRG00000022524)	PEX5L (ENSABRG00000022519)	TTC14 (ENSABRG00000022518)	ENSABRG00000022512
Duck	MODERN SPECIES	27	RPL22L1 (ENSAPLG00000009626)	EIF5A2 (ENSAPLG00000025753)	SLC2A2 (ENSAPLG00000010156)	ENSAPLG00000019003	ENSAPLG00000010480	ENSAPLG00000026428	PLD1 (ENSAPLG00000012211)	ENSAPLG00000027837	FNDC3B (ENSAPLG00000012065)	GHSR (ENSAPLG00000012064)	TNFSF10 (ENSAPLG00000022295)	NCEH1 (ENSAPLG00000011627)	ECT2 (ENSAPLG00000010339)	SPATA16 (ENSAPLG00000010186)	NLGN1 (ENSAPLG00000010082)	NAALADL2 (ENSAPLG00000010077) ##22	TBL1XR1 (ENSAPLG00000013445)	KCNMB2 (ENSAPLG00000020595)	ZMAT3 (ENSAPLG00000013292)	PIK3CA (ENSAPLG00000012924)	ZNF639 (ENSAPLG00000012914)	MFN1 (ENSAPLG00000012500)	GNB4 (ENSAPLG00000012235)	ACTL6A (ENSAPLG00000011809)	MRPL47 (ENSAPLG00000011793)	USP13 (ENSAPLG00000011239)	PEX5L (ENSAPLG00000011193)	TTC14 (ENSAPLG00000010921)	CCDC39 (ENSAPLG00000010760)	FXR1 (ENSAPLG00000010032)	DNAJC19 (ENSAPLG00000009956)
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Japanese quail	MODERN SPECIES	27	CLDN11 (ENSCJPG00005017904)	SLC7A14 (ENSCJPG00005017902)	RPL22L1 (ENSCJPG00005017901)	EIF5A2 (ENSCJPG00005017900)	SLC2A2 (ENSCJPG00005017899)	ENSCJPG00005017898	TNIK (ENSCJPG00005014297)	PLD1 (ENSCJPG00005014277)	FNDC3B (ENSCJPG00005014275)	GHS-R (ENSCJPG00005014274)	TNFSF10 (ENSCJPG00005014273)	NCEH1 (ENSCJPG00005014272)	ECT2 (ENSCJPG00005014271)	SPATA16 (ENSCJPG00005014270)	NLGN1 (ENSCJPG00005014267)	NAALADL2 (ENSCJPG00005014265) ##22	TBL1XR1 (ENSCJPG00005014262)	KCNMB2 (ENSCJPG00005014256)	ZMAT3 (ENSCJPG00005014255)	PIK3CA (ENSCJPG00005014254)	ZNF639 (ENSCJPG00005014253)	MFN1 (ENSCJPG00005014252)	GNB4 (ENSCJPG00005014251)	ACTL6A (ENSCJPG00005014250)	MRPL47 (ENSCJPG00005014249)	NDUFB5 (ENSCJPG00005014248)	USP13 (ENSCJPG00005014247)	PEX5L (ENSCJPG00005014246)	TTC14 (ENSCJPG00005014245)	CCDC39 (ENSCJPG00005014244)	FXR1 (ENSCJPG00005014242)
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00960000189666	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010	ENSGT00950000183189.a.b.a
Chicken	MODERN SPECIES	38	CLDN11 (ENSGALG00010017612)	SLC7A14 (ENSGALG00010017602)	RPL22L1 (ENSGALG00010014031)	EIF5A2 (ENSGALG00010014010)	SLC2A2 (ENSGALG00010013965)	ENSGALG00010013947	TNIK (ENSGALG00010013911)	PLD1 (ENSGALG00010014093)	FNDC3B (ENSGALG00010018579)	GHSR (ENSGALG00010018549)	TNFSF10 (ENSGALG00010018540)	NCEH1 (ENSGALG00010018534)	ECT2 (ENSGALG00010018517)	SPATA16 (ENSGALG00010018507)	NLGN1 (ENSGALG00010018484)	NAALADL2 (ENSGALG00010018465) ##22	TBL1XR1 (ENSGALG00010018396)	KCNMB2 (ENSGALG00010018349)	ZMAT3 (ENSGALG00010018317)	PIK3CA (ENSGALG00010018296)	ZNF639 (ENSGALG00010018275)	MFN1 (ENSGALG00010018255)	GNB4 (ENSGALG00010018185)	ACTL6A (ENSGALG00010018172)	MRPL47 (ENSGALG00010018143)	NDUFB5 (ENSGALG00010018137)	USP13 (ENSGALG00010018123)	PEX5L (ENSGALG00010018055)	TTC14 (ENSGALG00010018039)	CCDC39 (ENSGALG00010018026)	FXR1 (ENSGALG00010016652)
Turkey	MODERN SPECIES	2	TNIK (ENSMGAG00000010136)	PLD1 (ENSMGAG00000010081)	FNDC3B (ENSMGAG00000010040)	ENSMGAG00000019728	ENSMGAG00000001176	ACAA2 (ENSMGAG00000001246)	LIPG (ENSMGAG00000001317)	C18orf32 (ENSMGAG00000001347)	ENSMGAG00000021574	GHSR (ENSMGAG00000010038)	TNFSF10 (ENSMGAG00000010032)	NCEH1 (ENSMGAG00000010017)	ECT2 (ENSMGAG00000009941)	SPATA16 (ENSMGAG00000009930)	NLGN1 (ENSMGAG00000009919)	NAALADL2 (ENSMGAG00000009912) ##22	TBL1XR1 (ENSMGAG00000009892)	ENSMGAG00000021926	KCNMB2 (ENSMGAG00000009882)	ZMAT3 (ENSMGAG00000009873)	PIK3CA (ENSMGAG00000009828)	ZNF639 (ENSMGAG00000009823)	MFN1 (ENSMGAG00000009801)	GNB4 (ENSMGAG00000002359)	ACTL6A (ENSMGAG00000009756)	NDUFB5 (ENSMGAG00000009730)	MRPL47 (ENSMGAG00000020958)	USP13 (ENSMGAG00000009725)	PEX5L (ENSMGAG00000009710)	TTC14 (ENSMGAG00000009680)	CCDC39 (ENSMGAG00000009659)
African ostrich	MODERN SPECIES	563	SLC7A14 (ENSSCUG00000008009)	RPL22L1 (ENSSCUG00000008010)	EIF5A2 (ENSSCUG00000008011)	SLC2A2 (ENSSCUG00000008012)	TNIK (ENSSCUG00000008019)	PLD1 (ENSSCUG00000008028)	TMEM212 (ENSSCUG00000008032)	FNDC3B (ENSSCUG00000008036)	GHSR (ENSSCUG00000008041)	TNFSF10 (ENSSCUG00000008044)	NCEH1 (ENSSCUG00000008045)	ENSSCUG00000008047	ENSSCUG00000008048	SPATA16 (ENSSCUG00000008049)	NLGN1 (ENSSCUG00000008050)	NAALADL2 (ENSSCUG00000008053) ##22	TBL1XR1 (ENSSCUG00000008069)	KCNMB2 (ENSSCUG00000008078)
Australian saltwater crocodile	MODERN SPECIES	30	SLC7A14 (ENSCPRG00005009320)	RPL22L1 (ENSCPRG00005009347)	EIF5A2 (ENSCPRG00005009352)	SLC2A2 (ENSCPRG00005009357)	TNIK (ENSCPRG00005009378)	PLD1 (ENSCPRG00005009444)	TMEM212 (ENSCPRG00005009462)	FNDC3B (ENSCPRG00005009467)	GHSR (ENSCPRG00005009499)	TNFSF10 (ENSCPRG00005009508)	NCEH1 (ENSCPRG00005009516)	ECT2 (ENSCPRG00005009519)	SPATA16 (ENSCPRG00005009547)	ENSCPRG00005009577	ENSCPRG00005009587	NAALADL2 (ENSCPRG00005009597) ##22	TBL1XR1 (ENSCPRG00005009616)	ENSCPRG00005009640	KCNMB2 (ENSCPRG00005009647)	ZMAT3 (ENSCPRG00005009651)	ENSCPRG00005009658	ZNF639 (ENSCPRG00005009780)	MFN1 (ENSCPRG00005009802)	GNB4 (ENSCPRG00005009816)	ACTL6A (ENSCPRG00005010054)	MRPL47 (ENSCPRG00005010062)	NDUFB5 (ENSCPRG00005010066)	USP13 (ENSCPRG00005010083)	PEX5L (ENSCPRG00005010104)	TTC14 (ENSCPRG00005010137)	ENSCPRG00005010293
Cryptodira	ANCESTRAL SPECIES	16	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m
Emydidae	ANCESTRAL SPECIES	3	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m
Three-toed box turtle	MODERN SPECIES	32	RPL22L1 (ENSTMTG00000008206)	EIF5A2 (ENSTMTG00000008217)	SLC2A2 (ENSTMTG00000008232)	ENSTMTG00000008259	ENSTMTG00000008303	PLD1 (ENSTMTG00000008407)	TMEM212 (ENSTMTG00000009120)	FNDC3B (ENSTMTG00000009145)	GHSR (ENSTMTG00000009177)	TNFSF10 (ENSTMTG00000009207)	NCEH1 (ENSTMTG00000009220)	ENSTMTG00000009230	ENSTMTG00000009279	SPATA16 (ENSTMTG00000009298)	NLGN1 (ENSTMTG00000009329)	NAALADL2 (ENSTMTG00000009348) ##22	TBL1XR1 (ENSTMTG00000009406)	KCNMB2 (ENSTMTG00000009434)	ZMAT3 (ENSTMTG00000009458)	PIK3CA (ENSTMTG00000009470)	ENSTMTG00000009517	ZNF639 (ENSTMTG00000009549)	MFN1 (ENSTMTG00000009563)	GNB4 (ENSTMTG00000009587)	ACTL6A (ENSTMTG00000009615)	MRPL47 (ENSTMTG00000009647)	NDUFB5 (ENSTMTG00000009666)	USP13 (ENSTMTG00000009685)	PEX5L (ENSTMTG00000009761)	TTC14 (ENSTMTG00000009812)	CCDC39 (ENSTMTG00000009881)
painted turtle	MODERN SPECIES	748																NAALADL2 (ENSCPBG00000026894) ##22	ENSCPBG00000026899	TBL1XR1 (ENSCPBG00000026909)	KCNMB2 (ENSCPBG00000026916)	ZMAT3 (ENSCPBG00000026917)	PIK3CA (ENSCPBG00000026921)	ENSCPBG00000026924	ZNF639 (ENSCPBG00000026927)	MFN1 (ENSCPBG00000026929)	GNB4 (ENSCPBG00000026930)	ACTL6A (ENSCPBG00000026932)	MRPL47 (ENSCPBG00000026934)	NDUFB5 (ENSCPBG00000026935)	USP13 (ENSCPBG00000026936)	PEX5L (ENSCPBG00000026944)	ENSCPBG00000026954
Testudinidae	ANCESTRAL SPECIES	7	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT01030000235369.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701.n	ENSGT00390000013701.m
Goode s thornscrub tortoise	MODERN SPECIES	23	RPL22L1 (ENSGEVG00005017709)	EIF5A2 (ENSGEVG00005017696)	SLC2A2 (ENSGEVG00005017654)	TNIK (ENSGEVG00005013704)	PLD1 (ENSGEVG00005012935)	TMEM212 (ENSGEVG00005012875)	FNDC3B (ENSGEVG00005009065)	GHSR (ENSGEVG00005008495)	TNFSF10 (ENSGEVG00005008453)	NCEH1 (ENSGEVG00005008435)	ENSGEVG00005008421	ENSGEVG00005008394	SPATA16 (ENSGEVG00005008353)	ENSGEVG00005008327	NLGN1 (ENSGEVG00005008306)	NAALADL2 (ENSGEVG00005008241) ##22	TBL1XR1 (ENSGEVG00005008179)	KCNMB2 (ENSGEVG00005008147)	ZMAT3 (ENSGEVG00005008132)	PIK3CA (ENSGEVG00005008110)	ENSGEVG00005008073	ZNF639 (ENSGEVG00005008054)	MFN1 (ENSGEVG00005008013)	GNB4 (ENSGEVG00005007979)	ACTL6A (ENSGEVG00005007939)	MRPL47 (ENSGEVG00005007908)	NDUFB5 (ENSGEVG00005007886)	USP13 (ENSGEVG00005007750)	PEX5L (ENSGEVG00005007677)	ENSGEVG00005007645	ENSGEVG00005007619
Abingdon island giant tortoise	MODERN SPECIES	246															NLGN1 (ENSCABG00000019917)	NAALADL2 (ENSCABG00000019915) ##22
Chinese turtle	MODERN SPECIES	2246		TMEM47 (ENSPSIG00000014892)	ENSPSIG00000000238	ENSPSIG00000014789	ENSPSIG00000014539	ENSPSIG00000014334	ENSPSIG00000014075	ENSPSIG00000014060	SLC45A3 (ENSPSIG00000013533)	ENSPSIG00000013477	ELK4 (ENSPSIG00000013052)	MFSD4A (ENSPSIG00000012058)	CDK18 (ENSPSIG00000009607)	ENSPSIG00000000233	NLGN1 (ENSPSIG00000008922)	NAALADL2 (ENSPSIG00000008237) ##22	TBL1XR1 (ENSPSIG00000017266)	ENSPSIG00000017262
Mammalia	ANCESTRAL SPECIES	7	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Theria	ANCESTRAL SPECIES	5	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Primates	ANCESTRAL SPECIES	1	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000003738.a.b.h	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000003738.a.b.h	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980
Hominidae	ANCESTRAL SPECIES	2	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699	ENSGT00550000076377	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699.d	ENSGT00550000076377	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980
Gorilla	MODERN SPECIES	16	EIF5A2 (ENSGGOG00000000434)	ENSGGOG00000038385	SLC2A2 (ENSGGOG00000010660)	TNIK (ENSGGOG00000007526)	PLD1 (ENSGGOG00000007868)	TMEM212 (ENSGGOG00000014040)	FNDC3B (ENSGGOG00000002990)	GHSR (ENSGGOG00000024411)	TNFSF10 (ENSGGOG00000014549)	ENSGGOG00000037797	NCEH1 (ENSGGOG00000012274)	ENSGGOG00000043359	ECT2 (ENSGGOG00000008685)	SPATA16 (ENSGGOG00000002411)	NLGN1 (ENSGGOG00000004187)	NAALADL2 (ENSGGOG00000043435) ##22	TBL1XR1 (ENSGGOG00000009532)	ENSGGOG00000041945	KCNMB2 (ENSGGOG00000015779)	ZMAT3 (ENSGGOG00000009975)	PIK3CA (ENSGGOG00000009365)	KCNMB3 (ENSGGOG00000003933)	ENSGGOG00000041059	ZNF639 (ENSGGOG00000025664)	MFN1 (ENSGGOG00000009357)	GNB4 (ENSGGOG00000026248)	ENSGGOG00000002247	ACTL6A (ENSGGOG00000015710)	MRPL47 (ENSGGOG00000027171)	NDUFB5 (ENSGGOG00000005222)	USP13 (ENSGGOG00000034809)
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699.d	ENSGT00550000076377	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401
Human	MODERN SPECIES	15	ENSG00000285218	SLC7A14 (ENSG00000013293)	RPL22L1 (ENSG00000163584)	EIF5A2 (ENSG00000163577)	SLC2A2 (ENSG00000163581)	TNIK (ENSG00000154310)	PLD1 (ENSG00000075651)	TMEM212 (ENSG00000186329)	FNDC3B (ENSG00000075420)	GHSR (ENSG00000121853)	TNFSF10 (ENSG00000121858)	NCEH1 (ENSG00000144959)	ECT2 (ENSG00000114346)	SPATA16 (ENSG00000144962)	NLGN1 (ENSG00000169760)	NAALADL2 (ENSG00000177694) ##22	TBL1XR1 (ENSG00000177565)	KCNMB2 (ENSG00000197584)	ENSG00000275163	ZMAT3 (ENSG00000172667)	PIK3CA (ENSG00000121879)	KCNMB3 (ENSG00000171121)	ZNF639 (ENSG00000121864)	MFN1 (ENSG00000171109)	GNB4 (ENSG00000114450)	ACTL6A (ENSG00000136518)	MRPL47 (ENSG00000136522)	NDUFB5 (ENSG00000136521)	USP13 (ENSG00000058056)	PEX5L (ENSG00000114757)	TTC14 (ENSG00000163728)
Pan	ANCESTRAL SPECIES	2	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699.d	ENSGT00550000076377	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b ##22	ENSGT00940000158854	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980
Chimpanzee	MODERN SPECIES	16	SLC2A2 (ENSPTRG00000015623)	TNIK (ENSPTRG00000015624)	PLD1 (ENSPTRG00000015626)	ENSPTRG00000043296	TMEM212 (ENSPTRG00000015628)	FNDC3B (ENSPTRG00000015629)	GHSR (ENSPTRG00000015630)	TNFSF10 (ENSPTRG00000015631)	ENSPTRG00000048665	NCEH1 (ENSPTRG00000015632)	ENSPTRG00000050434	ECT2 (ENSPTRG00000015634)	SPATA16 (ENSPTRG00000015635)	NLGN1 (ENSPTRG00000024345)	ENSPTRG00000045205	NAALADL2 (ENSPTRG00000015638) ##22	ENSPTRG00000034248	TBL1XR1 (ENSPTRG00000015639)	KCNMB2 (ENSPTRG00000041297)	ZMAT3 (ENSPTRG00000015641)	PIK3CA (ENSPTRG00000015642)	ENSPTRG00000047696	KCNMB3 (ENSPTRG00000015643)	ENSPTRG00000051036	ZNF639 (ENSPTRG00000015644)	MFN1 (ENSPTRG00000015645)	GNB4 (ENSPTRG00000015646)	ENSPTRG00000050962	ACTL6A (ENSPTRG00000023973)	MRPL47 (ENSPTRG00000015648)	NDUFB5 (ENSPTRG00000015649)
Bonobo	MODERN SPECIES	16	SLC2A2 (ENSPPAG00000039133)	TNIK (ENSPPAG00000036343)	PLD1 (ENSPPAG00000031781)	ENSPPAG00000042519	TMEM212 (ENSPPAG00000027890)	FNDC3B (ENSPPAG00000016544)	GHSR (ENSPPAG00000029765)	TNFSF10 (ENSPPAG00000040821)	ENSPPAG00000036883	NCEH1 (ENSPPAG00000015341)	ENSPPAG00000000636	ECT2 (ENSPPAG00000040084)	SPATA16 (ENSPPAG00000026984)	NLGN1 (ENSPPAG00000030168)	ENSPPAG00000042448	NAALADL2 (ENSPPAG00000032916) ##22	ENSPPAG00000024602	TBL1XR1 (ENSPPAG00000042757)	ENSPPAG00000028436	KCNMB2 (ENSPPAG00000035742)	ZMAT3 (ENSPPAG00000035483)	PIK3CA (ENSPPAG00000028292)	KCNMB3 (ENSPPAG00000012788)	ENSPPAG00000040290	ZNF639 (ENSPPAG00000031214)	MFN1 (ENSPPAG00000043805)	GNB4 (ENSPPAG00000043825)	ENSPPAG00000031844	ACTL6A (ENSPPAG00000031814)	MRPL47 (ENSPPAG00000028033)	NDUFB5 (ENSPPAG00000032519)
Orangutan	MODERN SPECIES	16	SLC2A2 (ENSPPYG00000014295)	TNIK (ENSPPYG00000014296)	PLD1 (ENSPPYG00000014298)	ENSPPYG00000014299	TMEM212 (ENSPPYG00000014300)	FNDC3B (ENSPPYG00000014301)	GHSR (ENSPPYG00000014302)	TNFSF10 (ENSPPYG00000014303)	NCEH1 (ENSPPYG00000014304)	ENSPPYG00000014468	ECT2 (ENSPPYG00000014305)	ENSPPYG00000040416	SPATA16 (ENSPPYG00000014306)	NLGN1 (ENSPPYG00000014309)	ENSPPYG00000030345	NAALADL2 (ENSPPYG00000014311) ##22	ENSPPYG00000014312	TBL1XR1 (ENSPPYG00000033167)	KCNMB2 (ENSPPYG00000014313)	ENSPPYG00000014315	PIK3CA (ENSPPYG00000025901)	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316)	ZNF639 (ENSPPYG00000031916)	MFN1 (ENSPPYG00000014318)	GNB4 (ENSPPYG00000040073)	ENSPPYG00000040586	ACTL6A (ENSPPYG00000014320)	MRPL47 (ENSPPYG00000014321)	NDUFB5 (ENSPPYG00000037815)	USP13 (ENSPPYG00000014322)
Gibbon	MODERN SPECIES	1	EIF5A2 (ENSNLEG00000005292)	ENSNLEG00000027572	SLC2A2 (ENSNLEG00000005297)	TNIK (ENSNLEG00000005318)	PLD1 (ENSNLEG00000005457)	ENSNLEG00000031506	TMEM212 (ENSNLEG00000005473)	FNDC3B (ENSNLEG00000005477)	GHSR (ENSNLEG00000005544)	TNFSF10 (ENSNLEG00000005545)	ENSNLEG00000035870	NCEH1 (ENSNLEG00000005559)	ECT2 (ENSNLEG00000005565)	SPATA16 (ENSNLEG00000005617)	NLGN1 (ENSNLEG00000005618)	NAALADL2 (ENSNLEG00000005623) ##22	TBL1XR1 (ENSNLEG00000005631)	ENSNLEG00000029452	KCNMB2 (ENSNLEG00000005652)	ZMAT3 (ENSNLEG00000005658)	PIK3CA (ENSNLEG00000005661)	ENSNLEG00000005735	ENSNLEG00000031548	ZNF639 (ENSNLEG00000005744)	MFN1 (ENSNLEG00000005745)	GNB4 (ENSNLEG00000005751)	ENSNLEG00000035220	ACTL6A (ENSNLEG00000035913)	MRPL47 (ENSNLEG00000005831)	NDUFB5 (ENSNLEG00000034646)	USP13 (ENSNLEG00000005851)
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00950000183196.B	ENSGT00390000009310.j.a.b	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00550000076377	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00950000183196.B	ENSGT00390000009310.j.a.b	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00550000076377	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000009310.j.a.b	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00550000076377	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b ##22	ENSGT00860000135711.a	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837.m
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00950000183196.B	ENSGT00390000009310.j.a.b	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00910000147646	ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b.d	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980
Cercopithecinae_d	ANCESTRAL SPECIES	181																ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b.d	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980
Drill	MODERN SPECIES	1683																NAALADL2 (ENSMLEG00000013782) ##22
Sooty mangabey	MODERN SPECIES	245																NAALADL2 (ENSCATG00000034975) ##22	TBL1XR1 (ENSCATG00000034105)	ENSCATG00000038241
Olive baboon	MODERN SPECIES	11	FNDC3B (ENSPANG00000021486)	GHSR (ENSPANG00000047978)	TNFSF10 (ENSPANG00000008895)	NCEH1 (ENSPANG00000050053)	ENSPANG00000048830	ECT2 (ENSPANG00000018155)	ENSPANG00000039329	SPATA16 (ENSPANG00000009809)	ENSPANG00000040437	ENSPANG00000048027	NLGN1 (ENSPANG00000004617)	ENSPANG00000050272	ENSPANG00000048566	ENSPANG00000042822	ENSPANG00000048384	NAALADL2 (ENSPANG00000024430) ##22	ENSPANG00000050904	TBL1XR1 (ENSPANG00000011144)	ENSPANG00000046461	ENSPANG00000039756	ENSPANG00000037722	ENSPANG00000046346	ENSPANG00000036979	ENSPANG00000051236	ENSPANG00000036994	KCNMB2 (ENSPANG00000019971)	ZMAT3 (ENSPANG00000023167)	PIK3CA (ENSPANG00000023166)	KCNMB3 (ENSPANG00000023165)	ZNF639 (ENSPANG00000024157)	MFN1 (ENSPANG00000018156)
Macaca	ANCESTRAL SPECIES	5	ENSGT00950000183196.B	ENSGT00390000009310.j.a.b	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000155147.n	ENSGT00550000076377	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b ##22	ENSGT00860000135711.a	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT00910000147799	ENSGT01000000214413.b.a.a	ENSGT00940000154863.db.d	ENSGT00940000156000.o.b	ENSGT00940000156305	ENSGT00390000002837.m
Pig-tailed macaque	MODERN SPECIES	164													ENSMNEG00000010516	NLGN1 (ENSMNEG00000036920)	ENSMNEG00000007958	NAALADL2 (ENSMNEG00000036084) ##22	ENSMNEG00000034366	TBL1XR1 (ENSMNEG00000000982)	KCNMB2 (ENSMNEG00000037391)	ZMAT3 (ENSMNEG00000036725)	PIK3CA (ENSMNEG00000033970)	ENSMNEG00000035824	KCNMB3 (ENSMNEG00000029975)	ENSMNEG00000044183	MFN1 (ENSMNEG00000040994)	ENSMNEG00000010044	GNB4 (ENSMNEG00000028705)	ENSMNEG00000036158	ENSMNEG00000036357	ACTL6A (ENSMNEG00000031576)	ENSMNEG00000001870
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00950000183196.B	ENSGT01100000263539.b.b.b.b.b.a.a.a.b.b	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT01100000263539.b.a.a.a.b.b.b.b.a.a.a.a	ENSGT01100000263493.a.a.b.b.a.a.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.b.b.a	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335.o	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156000.o.b	ENSGT00940000156305	ENSGT00390000002837.m	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000059130	PLD1 (ENSMFAG00000002954)	TMEM212 (ENSMFAG00000001516)	FNDC3B (ENSMFAG00000033083)	GHSR (ENSMFAG00000049961)	TNFSF10 (ENSMFAG00000002428)	ENSMFAG00000057116	ENSMFAG00000059827	NCEH1 (ENSMFAG00000043084)	ECT2 (ENSMFAG00000041285)	ENSMFAG00000035377	SPATA16 (ENSMFAG00000035575)	NLGN1 (ENSMFAG00000036767)	ENSMFAG00000024380	ENSMFAG00000064647	NAALADL2 (ENSMFAG00000000195) ##22	ENSMFAG00000057081	ENSMFAG00000058101	TBL1XR1 (ENSMFAG00000007211)	ENSMFAG00000050846	ENSMFAG00000060621	KCNMB2 (ENSMFAG00000037847)	ZMAT3 (ENSMFAG00000021292)	PIK3CA (ENSMFAG00000045156)	KCNMB3 (ENSMFAG00000000185)	ZNF639 (ENSMFAG00000002403)	MFN1 (ENSMFAG00000003857)	GNB4 (ENSMFAG00000041470)	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257
Rhesus	MODERN SPECIES	11	TNIK (ENSMMUG00000022262)	ENSMMUG00000062587	PLD1 (ENSMMUG00000023289)	TMEM212 (ENSMMUG00000043637)	ENSMMUG00000060393	FNDC3B (ENSMMUG00000004189)	GHSR (ENSMMUG00000004194)	TNFSF10 (ENSMMUG00000019302)	ENSMMUG00000059599	ENSMMUG00000051288	NCEH1 (ENSMMUG00000056425)	ECT2 (ENSMMUG00000017014)	SPATA16 (ENSMMUG00000040869)	NLGN1 (ENSMMUG00000004671)	ENSMMUG00000059733	NAALADL2 (ENSMMUG00000045509) ##22	ENSMMUG00000010630	ENSMMUG00000059662	TBL1XR1 (ENSMMUG00000019597)	ENSMMUG00000055098	KCNMB2 (ENSMMUG00000014426)	ZMAT3 (ENSMMUG00000003216)	PIK3CA (ENSMMUG00000005188)	KCNMB3 (ENSMMUG00000005187)	ZNF639 (ENSMMUG00000023078)	MFN1 (ENSMMUG00000004079)	GNB4 (ENSMMUG00000004083)	ENSMMUG00000054028	ACTL6A (ENSMMUG00000009742)	MRPL47 (ENSMMUG00000009744)	NDUFB5 (ENSMMUG00000009746)
Vervet Monkey	MODERN SPECIES	6	RPL22L1 (ENSCSAG00000012716)	EIF5A2 (ENSCSAG00000012722)	SLC2A2 (ENSCSAG00000012727)	TNIK (ENSCSAG00000012748)	PLD1 (ENSCSAG00000012767)	TMEM212 (ENSCSAG00000012780)	FNDC3B (ENSCSAG00000012797)	GHSR (ENSCSAG00000012810)	TNFSF10 (ENSCSAG00000012815)	NCEH1 (ENSCSAG00000012823)	ENSCSAG00000018886	ECT2 (ENSCSAG00000012841)	SPATA16 (ENSCSAG00000012878)	NLGN1 (ENSCSAG00000012894)	ENSCSAG00000018885	NAALADL2 (ENSCSAG00000012912) ##22	TBL1XR1 (ENSCSAG00000012927)	ENSCSAG00000018884	KCNMB2 (ENSCSAG00000012931)	ZMAT3 (ENSCSAG00000012935)	PIK3CA (ENSCSAG00000012948)	KCNMB3 (ENSCSAG00000012962)	ZNF639 (ENSCSAG00000012977)	MFN1 (ENSCSAG00000012988)	GNB4 (ENSCSAG00000012993)	ACTL6A (ENSCSAG00000013017)	ENSCSAG00000013046	NDUFB5 (ENSCSAG00000013080)	USP13 (ENSCSAG00000013094)	PEX5L (ENSCSAG00000013101)	TTC14 (ENSCSAG00000013105)
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711
Cebidae	ANCESTRAL SPECIES	22	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000001813	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711
Capuchin	MODERN SPECIES	300															ENSCCAG00000026585	NAALADL2 (ENSCCAG00000024408) ##22	TBL1XR1 (ENSCCAG00000032025)	ENSCCAG00000027939
Bolivian squirrel monkey	MODERN SPECIES	54	COL6A6 (ENSSBOG00000027757)	COL6A5 (ENSSBOG00000022269)	SLC2A2 (ENSSBOG00000019413)	TNIK (ENSSBOG00000027380)	PLD1 (ENSSBOG00000024875)	ENSSBOG00000016746	TMEM212 (ENSSBOG00000021220)	FNDC3B (ENSSBOG00000024022)	GHSR (ENSSBOG00000026382)	TNFSF10 (ENSSBOG00000031527)	NCEH1 (ENSSBOG00000031890)	ECT2 (ENSSBOG00000030797)	SPATA16 (ENSSBOG00000029188)	NLGN1 (ENSSBOG00000032454)	ENSSBOG00000019640	NAALADL2 (ENSSBOG00000024409) ##22	ENSSBOG00000020649	TBL1XR1 (ENSSBOG00000026417)	ENSSBOG00000023204	ENSSBOG00000029008
Marmoset	MODERN SPECIES	8	TMEM212 (ENSCJAG00000002292)	ENSCJAG00000072107	FNDC3B (ENSCJAG00000002213)	GHSR (ENSCJAG00000002211)	TNFSF10 (ENSCJAG00000086478)	ENSCJAG00000078530	ECT2 (ENSCJAG00000002129)	NCEH1 (ENSCJAG00000074580)	ENSCJAG00000073535	SPATA16 (ENSCJAG00000002119)	ENSCJAG00000081817	NLGN1 (ENSCJAG00000002114)	ENSCJAG00000077913	ENSCJAG00000085114	ENSCJAG00000075956	NAALADL2 (ENSCJAG00000031211) ##22	ENSCJAG00000071672	ENSCJAG00000061157	ENSCJAG00000075698	TBL1XR1 (ENSCJAG00000002082)	ENSCJAG00000076151	ENSCJAG00000077575	ENSCJAG00000085240	ENSCJAG00000073848	ENSCJAG00000078471	ENSCJAG00000079479	ENSCJAG00000073628	ENSCJAG00000080906	ENSCJAG00000070364
Tarsier	MODERN SPECIES	6001																NAALADL2 (ENSTSYG00000008986) ##22	MCPH1 (ENSTSYG00000033222)	ANGPT2 (ENSTSYG00000011742)	AGPAT5 (ENSTSYG00000025960)	XKR5 (ENSTSYG00000008975)	DEFB1 (ENSTSYG00000013623)
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00860000135711	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.p	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Greater bamboo lemur	MODERN SPECIES	410					TNIK (ENSPSMG00000016825)	PLD1 (ENSPSMG00000016300)	TMEM212 (ENSPSMG00000016184)	FNDC3B (ENSPSMG00000016159)	GHSR (ENSPSMG00000016081)	TNFSF10 (ENSPSMG00000016074)	NCEH1 (ENSPSMG00000016040)	ECT2 (ENSPSMG00000015943)	SPATA16 (ENSPSMG00000015748)	ENSPSMG00000015718	NLGN1 (ENSPSMG00000015706)	NAALADL2 (ENSPSMG00000015690) ##22	TBL1XR1 (ENSPSMG00000015636)	ENSPSMG00000015530	ENSPSMG00000015513	KCNMB2 (ENSPSMG00000015503)	ENSPSMG00000015400	GPC5 (ENSPSMG00000015390)
Mouse lemur	MODERN SPECIES		RPL22L1 (ENSMICG00000049215)	EIF5A2 (ENSMICG00000049338)	SLC2A2 (ENSMICG00000049076)	ENSMICG00000049283	TNIK (ENSMICG00000049397)	ENSMICG00000049473	PLD1 (ENSMICG00000049434)	TMEM212 (ENSMICG00000048602)	FNDC3B (ENSMICG00000049279)	GHSR (ENSMICG00000049355)	TNFSF10 (ENSMICG00000049347)	NCEH1 (ENSMICG00000049131)	ECT2 (ENSMICG00000049582)	SPATA16 (ENSMICG00000049271)	NLGN1 (ENSMICG00000049574)	NAALADL2 (ENSMICG00000048670) ##22	ENSMICG00000048980	TBL1XR1 (ENSMICG00000049448)	ENSMICG00000049180	KCNMB2 (ENSMICG00000049491)	ZMAT3 (ENSMICG00000049501)	PIK3CA (ENSMICG00000049155)	KCNMB3 (ENSMICG00000048999)	ENSMICG00000048810	MFN1 (ENSMICG00000049257)	GNB4 (ENSMICG00000049251)	ACTL6A (ENSMICG00000049032)	MRPL47 (ENSMICG00000049377)	ENSMICG00000049551	USP13 (ENSMICG00000049124)	ENSMICG00000049219
Bushbaby	MODERN SPECIES	193								PLD1 (ENSOGAG00000010239)	FNDC3B (ENSOGAG00000007902)	GHSR (ENSOGAG00000033442)	TNFSF10 (ENSOGAG00000009094)	NCEH1 (ENSOGAG00000000976)	ECT2 (ENSOGAG00000003365)	SPATA16 (ENSOGAG00000001358)	NLGN1 (ENSOGAG00000012761)	NAALADL2 (ENSOGAG00000005833) ##22	TBL1XR1 (ENSOGAG00000006708)	ENSOGAG00000034666	KCNMB2 (ENSOGAG00000015737)	ZMAT3 (ENSOGAG00000003252)	ENSOGAG00000027303	PIK3CA (ENSOGAG00000006592)	KCNMB3 (ENSOGAG00000006601)	ENSOGAG00000034726	MFN1 (ENSOGAG00000000876)	GNB4 (ENSOGAG00000000877)	ACTL6A (ENSOGAG00000016951)	MRPL47 (ENSOGAG00000016957)	NDUFB5 (ENSOGAG00000016966)	USP13 (ENSOGAG00000013871)	PEX5L (ENSOGAG00000013877)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Glires	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980	ENSGT00940000157401
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01020000233244	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.k	ENSGT00940000157401
Marmotini	ANCESTRAL SPECIES	59	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b.q.a	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01020000233244	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00960000190585	ENSGT00390000009980.k	ENSGT00940000157401
Alpin marmot	MODERN SPECIES	37	SLC2A2 (ENSMMMG00000006743)	TNIK (ENSMMMG00000005292)	PLD1 (ENSMMMG00000005075)	TMEM212 (ENSMMMG00000005043)	FNDC3B (ENSMMMG00000004936)	ENSMMMG00000004926	GHSR (ENSMMMG00000004921)	TNFSF10 (ENSMMMG00000004911)	NCEH1 (ENSMMMG00000004887)	ENSMMMG00000004880	ECT2 (ENSMMMG00000004729)	SPATA16 (ENSMMMG00000004708)	NLGN1 (ENSMMMG00000004664)	ENSMMMG00000004633	ENSMMMG00000004628	NAALADL2 (ENSMMMG00000004611) ##22	ENSMMMG00000004587	ENSMMMG00000004514	KCNMB2 (ENSMMMG00000004486)	ZMAT3 (ENSMMMG00000004454)	PIK3CA (ENSMMMG00000004387)	ENSMMMG00000004373	KCNMB3 (ENSMMMG00000004362)	ENSMMMG00000004333	MFN1 (ENSMMMG00000004267)	GNB4 (ENSMMMG00000004203)	ACTL6A (ENSMMMG00000004175)	MRPL47 (ENSMMMG00000004133)	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098)	USP13 (ENSMMMG00000004025)
Marmotini_b	ANCESTRAL SPECIES	149													ENSGT00940000156299.t	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00910000147422	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00390000015224.c.b.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.k	ENSGT00940000157401
Squirrel	MODERN SPECIES	303													ENSSTOG00000006332	SPATA16 (ENSSTOG00000006368)	NLGN1 (ENSSTOG00000009631)	NAALADL2 (ENSSTOG00000031097) ##22
Arctic ground squirrel	MODERN SPECIES	22														SPATA16 (ENSUPAG00010022746)	NLGN1 (ENSUPAG00010022744)	NAALADL2 (ENSUPAG00010022740) ##22	ENSUPAG00010022737	TBL1XR1 (ENSUPAG00010022733)	KCNMB2 (ENSUPAG00010022732)	ZMAT3 (ENSUPAG00010022730)	PIK3CA (ENSUPAG00010022723)	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719)	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715)	MFN1 (ENSUPAG00010022711)	GNB4 (ENSUPAG00010022702)	ENSUPAG00010022699	ACTL6A (ENSUPAG00010022696)	MRPL47 (ENSUPAG00010022693)	NDUFB5 (ENSUPAG00010022690)
Eurasian red squirrel	MODERN SPECIES	1	SLC2A2 (ENSSVLG00005012009)	ENSSVLG00005009676	ENSSVLG00005009308	PLD1 (ENSSVLG00005009258)	TMEM212 (ENSSVLG00005009205)	FNDC3B (ENSSVLG00005009155)	GHSR (ENSSVLG00005009108)	ENSSVLG00005009074	TNFSF10 (ENSSVLG00005009030)	ENSSVLG00005009000	NCEH1 (ENSSVLG00005008940)	ECT2 (ENSSVLG00005008532)	SPATA16 (ENSSVLG00005008419)	NLGN1 (ENSSVLG00005008366)	ENSSVLG00005008340	NAALADL2 (ENSSVLG00005008257) ##22	TBL1XR1 (ENSSVLG00005008184)	ENSSVLG00005008160	KCNMB2 (ENSSVLG00005008096)	ENSSVLG00005008059	ZMAT3 (ENSSVLG00005008037)	PIK3CA (ENSSVLG00005007992)	KCNMB3 (ENSSVLG00005007870)	ENSSVLG00005007822	ENSSVLG00005007788	MFN1 (ENSSVLG00005007726)	GNB4 (ENSSVLG00005007689)	ENSSVLG00005007595	MRPL47 (ENSSVLG00005007505)	ENSSVLG00005007458	USP13 (ENSSVLG00005007303)
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b.n.a	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Long-tailed chinchilla	MODERN SPECIES	127	RPL22L1 (ENSCLAG00000012186)	ENSCLAG00000013461	SLC2A2 (ENSCLAG00000014131)	TNIK (ENSCLAG00000011229)	PLD1 (ENSCLAG00000012419)	TMEM212 (ENSCLAG00000016037)	FNDC3B (ENSCLAG00000015717)	GHSR (ENSCLAG00000012973)	TNFSF10 (ENSCLAG00000015552)	ENSCLAG00000017893	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000013454	ECT2 (ENSCLAG00000015030)	SPATA16 (ENSCLAG00000016484)	NLGN1 (ENSCLAG00000010604)	NAALADL2 (ENSCLAG00000012428) ##22	ENSCLAG00000018045	TBL1XR1 (ENSCLAG00000013893)	KCNMB2 (ENSCLAG00000014319)	ZMAT3 (ENSCLAG00000013464)	PIK3CA (ENSCLAG00000015135)	KCNMB3 (ENSCLAG00000014741)	ZNF639 (ENSCLAG00000011168)	MFN1 (ENSCLAG00000015912)	GNB4 (ENSCLAG00000015522)	ACTL6A (ENSCLAG00000012251)	ENSCLAG00000015039	ENSCLAG00000014903	USP13 (ENSCLAG00000015308)	PEX5L (ENSCLAG00000014042)	TTC14 (ENSCLAG00000013302)
Guinea pig	MODERN SPECIES	47	UTP3 (ENSCPOG00000005869)	Jchain (ENSCPOG00000031403)	ENAM (ENSCPOG00000013971)	AMBN (ENSCPOG00000001111)	AMTN (ENSCPOG00000001109)	ENSCPOG00000004871	ODAM (ENSCPOG00000008289)	ENSCPOG00000030416	SULT1E1 (ENSCPOG00000013300)	ENSCPOG00000024974	ENSCPOG00000024155	NCEH1 (ENSCPOG00000033460)	ECT2 (ENSCPOG00000004744)	SPATA16 (ENSCPOG00000006395)	NLGN1 (ENSCPOG00000005752)	NAALADL2 (ENSCPOG00000013413) ##22	TBL1XR1 (ENSCPOG00000005472)	KCNMB2 (ENSCPOG00000013955)	ZMAT3 (ENSCPOG00000003865)	PIK3CA (ENSCPOG00000006574)	KCNMB3 (ENSCPOG00000025991)	ZNF639 (ENSCPOG00000039664)	MFN1 (ENSCPOG00000033188)	GNB4 (ENSCPOG00000034790)	ACTL6A (ENSCPOG00000025370)	ENSCPOG00000002312	NDUFB5 (ENSCPOG00000036110)	USP13 (ENSCPOG00000002315)	PEX5L (ENSCPOG00000002319)	TTC14 (ENSCPOG00000015311)	CCDC39 (ENSCPOG00000015314)
Naked mole-rat female	MODERN SPECIES	27	SLC2A2 (ENSHGLG00000049404)	TNIK (ENSHGLG00000013310)	PLD1 (ENSHGLG00000014314)	TMEM212 (ENSHGLG00000014698)	FNDC3B (ENSHGLG00000014877)	GHSR (ENSHGLG00000014950)	TNFSF10 (ENSHGLG00000044629)	NCEH1 (ENSHGLG00000010683)	ECT2 (ENSHGLG00000011074)	ENSHGLG00000011562	ENSHGLG00000003841	SPATA16 (ENSHGLG00000011913)	ENSHGLG00000048748	NLGN1 (ENSHGLG00000013440)	ENSHGLG00000042892	NAALADL2 (ENSHGLG00000013839) ##22	ENSHGLG00000050637	ENSHGLG00000033259	TBL1XR1 (ENSHGLG00000044077)	ENSHGLG00000050422	ENSHGLG00000019115	ENSHGLG00000038549	ENSHGLG00000016930	KCNMB2 (ENSHGLG00000041894)	ENSHGLG00000011277	ZMAT3 (ENSHGLG00000011523)	ENSHGLG00000011894	KCNMB3 (ENSHGLG00000012132)	ZNF639 (ENSHGLG00000050776)	MFN1 (ENSHGLG00000012515)	ENSHGLG00000044219
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Myomorpha	ANCESTRAL SPECIES	38	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Muroidea	ANCESTRAL SPECIES	44	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00900000143480	ENSGT00940000155866
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00900000143480	ENSGT00940000155866
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00900000143480	ENSGT00940000155866	ENSGT00940000160763	ENSGT00940000160217	ENSGT01100000263494.a.a.a.a.a.d.b.c	ENSGT01100000263494.a.a.a.a.a.d.a	ENSGT01100000263494.a.a.a.a.a.c.a	ENSGT01100000263494.a.a.a.a.a.c.b
Chinese hamster chok1gshd	MODERN SPECIES	352	Cldn11 (ENSCGRG00001022207)	Slc7a14 (ENSCGRG00001013994)	Rpl22l1 (ENSCGRG00001019790)	Eif5a2 (ENSCGRG00001021268)	Slc2a2 (ENSCGRG00001016694)	Tnik (ENSCGRG00001021152)	Pld1 (ENSCGRG00001023076)	Tmem212 (ENSCGRG00001018197)	Fndc3b (ENSCGRG00001016574)	Ghsr (ENSCGRG00001022780)	Tnfsf10 (ENSCGRG00001006321)	Nceh1 (ENSCGRG00001007699)	Ect2 (ENSCGRG00001011775)	Spata16 (ENSCGRG00001013349)	Nlgn1 (ENSCGRG00001012016)	Naaladl2 (ENSCGRG00001014389) ##22	Tbl1xr1 (ENSCGRG00001012826)	ENSCGRG00001002531	ENSCGRG00001005511	ENSCGRG00001009352	Agtr1b (ENSCGRG00001010827)	Cpb1 (ENSCGRG00001021645)	Cpa3 (ENSCGRG00001015838)	Gyg (ENSCGRG00001022471)	Hltf (ENSCGRG00001009501)	Hps3 (ENSCGRG00001011346)	Cp (ENSCGRG00001012365)	Tespa1 (ENSCGRG00001000048)	Neurod4 (ENSCGRG00001001990)	Or9k7 (ENSCGRG00001011858)	ENSCGRG00001012166
Golden Hamster	MODERN SPECIES	911																ENSMAUG00000017877 ##22
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866
Northern American deer mouse	MODERN SPECIES	19	Slc7a14 (ENSPEMG00000007696)	ENSPEMG00000029517	Rpl22l1 (ENSPEMG00000012683)	Eif5a2 (ENSPEMG00000027640)	Slc2a2 (ENSPEMG00000014197)	Tnik (ENSPEMG00000008623)	Pld1 (ENSPEMG00000015027)	Tmem212 (ENSPEMG00000005772)	Fndc3b (ENSPEMG00000027449)	Ghsr (ENSPEMG00000012672)	Tnfsf10 (ENSPEMG00000014291)	Nceh1 (ENSPEMG00000025404)	Ect2 (ENSPEMG00000006276)	Spata16 (ENSPEMG00000010570)	Nlgn1 (ENSPEMG00000000168)	Naaladl2 (ENSPEMG00000011857) ##22	ENSPEMG00000030654	ENSPEMG00000029610	ENSPEMG00000012741	Pabpc4l (ENSPEMG00000012565)	Pcdh10 (ENSPEMG00000021689)	ENSPEMG00000023007	Sclt1 (ENSPEMG00000012760)	Jade1 (ENSPEMG00000010395)	Pgrmc2 (ENSPEMG00000027295)	ENSPEMG00000018238	ENSPEMG00000020946	Abhd18 (ENSPEMG00000014206)	Fundc2b (ENSPEMG00000030148)	Mfsd8 (ENSPEMG00000016465)	Plk4 (ENSPEMG00000018738)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000155893.b	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866	ENSGT00940000154473.a	ENSGT00940000154004.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100	ENSGT00940000153141.B.b
Mus	ANCESTRAL SPECIES	7	ENSGT00940000164694	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866	ENSGT00940000154473.a	ENSGT00940000154004.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100	ENSGT00940000153141.B.b
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000164694	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015.b	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866	ENSGT00940000154473.a	ENSGT00940000154004.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100	ENSGT00940000153141.B.b
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000164694	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015.b	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866	ENSGT00940000154473.a	ENSGT00940000154004.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100	ENSGT00940000153141.B.b
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000164694	ENSGT00940000154509.xc.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000182224	ENSGT00950000183196.B	ENSGT00940000155015.b	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT01050000244888.b.a.c.b.h	ENSGT00940000157819	ENSGT00940000161551	ENSGT00940000154674	ENSGT00910000144305	ENSGT00390000015458	ENSGT00940000155866	ENSGT00940000154473.a	ENSGT00940000154004.a	ENSGT00860000135717	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100
spretus	DUPLICATION
spretus	MODERN SPECIES	12	Egfem1 (MGP_SPRETEiJ_G0025832)	Rpl22l1 (MGP_SPRETEiJ_G0025831)	Eif5a2 (MGP_SPRETEiJ_G0025830)	Slc2a2 (MGP_SPRETEiJ_G0025828)	Tnik (MGP_SPRETEiJ_G0025827)	MGP_SPRETEiJ_G0025826	Pld1 (MGP_SPRETEiJ_G0025825)	Tmem212 (MGP_SPRETEiJ_G0025824)	Fndc3b (MGP_SPRETEiJ_G0025823)	Ghsr (MGP_SPRETEiJ_G0025822)	Tnfsf10 (MGP_SPRETEiJ_G0025821)	Nceh1 (MGP_SPRETEiJ_G0025820)	Ect2 (MGP_SPRETEiJ_G0025819)	Spata16 (MGP_SPRETEiJ_G0025818)	Nlgn1 (MGP_SPRETEiJ_G0025817)	MGP_SPRETEiJ_G0025816 ##22	MGP_SPRETEiJ_G0025815 ##22	Tbl1xr1 (MGP_SPRETEiJ_G0025814)	Agtr1b (MGP_SPRETEiJ_G0025813)	Cpa3 (MGP_SPRETEiJ_G0025812)	Cpb1 (MGP_SPRETEiJ_G0025811)	Gyg (MGP_SPRETEiJ_G0025810)	Hltf (MGP_SPRETEiJ_G0025809)	Hps3 (MGP_SPRETEiJ_G0025808)	Cp (MGP_SPRETEiJ_G0025807)	MGP_SPRETEiJ_G0025806	Crh (MGP_SPRETEiJ_G0025805)	Trim55 (MGP_SPRETEiJ_G0025804)	MGP_SPRETEiJ_G0025803	Dnajc5b (MGP_SPRETEiJ_G0025802)	Pde7a (MGP_SPRETEiJ_G0025801)
spretus	MODERN SPECIES	12	Rpl22l1 (MGP_SPRETEiJ_G0025831)	Eif5a2 (MGP_SPRETEiJ_G0025830)	Slc2a2 (MGP_SPRETEiJ_G0025828)	Tnik (MGP_SPRETEiJ_G0025827)	MGP_SPRETEiJ_G0025826	Pld1 (MGP_SPRETEiJ_G0025825)	Tmem212 (MGP_SPRETEiJ_G0025824)	Fndc3b (MGP_SPRETEiJ_G0025823)	Ghsr (MGP_SPRETEiJ_G0025822)	Tnfsf10 (MGP_SPRETEiJ_G0025821)	Nceh1 (MGP_SPRETEiJ_G0025820)	Ect2 (MGP_SPRETEiJ_G0025819)	Spata16 (MGP_SPRETEiJ_G0025818)	Nlgn1 (MGP_SPRETEiJ_G0025817)	MGP_SPRETEiJ_G0025816 ##22	MGP_SPRETEiJ_G0025815 ##22	Tbl1xr1 (MGP_SPRETEiJ_G0025814)	Agtr1b (MGP_SPRETEiJ_G0025813)	Cpa3 (MGP_SPRETEiJ_G0025812)	Cpb1 (MGP_SPRETEiJ_G0025811)	Gyg (MGP_SPRETEiJ_G0025810)	Hltf (MGP_SPRETEiJ_G0025809)	Hps3 (MGP_SPRETEiJ_G0025808)	Cp (MGP_SPRETEiJ_G0025807)	MGP_SPRETEiJ_G0025806	Crh (MGP_SPRETEiJ_G0025805)	Trim55 (MGP_SPRETEiJ_G0025804)	MGP_SPRETEiJ_G0025803	Dnajc5b (MGP_SPRETEiJ_G0025802)	Pde7a (MGP_SPRETEiJ_G0025801)	Mtfr1 (MGP_SPRETEiJ_G0025800)
Steppe mouse	MODERN SPECIES	3284															ENSMSIG00000003831	Naaladl2 (ENSMSIG00000003840) ##22	ENSMSIG00000003888	ENSMSIG00000003917	Tbl1xr1 (ENSMSIG00000003957)
Mouse	MODERN SPECIES	12	Egfem1 (ENSMUSG00000063600)	Gm1527 (ENSMUSG00000074655)	Rpl22l1 (ENSMUSG00000039221)	Eif5a2 (ENSMUSG00000050192)	Slc2a2 (ENSMUSG00000027690)	Tnik (ENSMUSG00000027692)	Pld1 (ENSMUSG00000027695)	Tmem212 (ENSMUSG00000043164)	Fndc3b (ENSMUSG00000039286)	Ghsr (ENSMUSG00000051136)	Tnfsf10 (ENSMUSG00000039304)	Nceh1 (ENSMUSG00000027698)	Ect2 (ENSMUSG00000027699)	Spata16 (ENSMUSG00000039335)	Nlgn1 (ENSMUSG00000063887)	Naaladl2 (ENSMUSG00000102758) ##22	Tbl1xr1 (ENSMUSG00000027630)	Agtr1b (ENSMUSG00000054988)	Cpb1 (ENSMUSG00000011463)	Cpa3 (ENSMUSG00000001865)	Gyg (ENSMUSG00000019528)	Hltf (ENSMUSG00000002428)	Hps3 (ENSMUSG00000027615)	Cp (ENSMUSG00000003617)	Crh (ENSMUSG00000049796)	Trim55 (ENSMUSG00000060913)	Dnajc5b (ENSMUSG00000027606)	Pde7a (ENSMUSG00000069094)	Mtfr1 (ENSMUSG00000027601)	Armc1 (ENSMUSG00000027599)	Cyp7b1 (ENSMUSG00000039519)
Ryukyu mouse	MODERN SPECIES	12	Mecom (MGP_CAROLIEiJ_G0024899)	Egfem1 (MGP_CAROLIEiJ_G0024898)	Rpl22l1 (MGP_CAROLIEiJ_G0024897)	Eif5a2 (MGP_CAROLIEiJ_G0024896)	Slc2a2 (MGP_CAROLIEiJ_G0024895)	Tnik (MGP_CAROLIEiJ_G0024894)	Pld1 (MGP_CAROLIEiJ_G0024893)	Tmem212 (MGP_CAROLIEiJ_G0024892)	Fndc3b (MGP_CAROLIEiJ_G0024891)	Ghsr (MGP_CAROLIEiJ_G0024890)	Tnfsf10 (MGP_CAROLIEiJ_G0024889)	Nceh1 (MGP_CAROLIEiJ_G0024888)	MGP_CAROLIEiJ_G0024887	Spata16 (MGP_CAROLIEiJ_G0024886)	Nlgn1 (MGP_CAROLIEiJ_G0024885)	Naaladl2 (MGP_CAROLIEiJ_G0024884) ##22	Tbl1xr1 (MGP_CAROLIEiJ_G0024883)	Agtr1b (MGP_CAROLIEiJ_G0024882)	Cpb1 (MGP_CAROLIEiJ_G0024881)	Cpa3 (MGP_CAROLIEiJ_G0024880)	Gyg (MGP_CAROLIEiJ_G0024879)	Hltf (MGP_CAROLIEiJ_G0024878)	Hps3 (MGP_CAROLIEiJ_G0024877)	Cp (MGP_CAROLIEiJ_G0024876)	Crh (MGP_CAROLIEiJ_G0024875)	Trim55 (MGP_CAROLIEiJ_G0024874)	MGP_CAROLIEiJ_G0024873	MGP_CAROLIEiJ_G0024872	Dnajc5b (MGP_CAROLIEiJ_G0024871)	Pde7a (MGP_CAROLIEiJ_G0024870)	Mtfr1 (MGP_CAROLIEiJ_G0024869)
Shrew mouse	MODERN SPECIES	17	Mecom (MGP_PahariEiJ_G0026344)	Egfem1 (MGP_PahariEiJ_G0026343)	Rpl22l1 (MGP_PahariEiJ_G0026342)	Eif5a2 (MGP_PahariEiJ_G0026341)	MGP_PahariEiJ_G0026340	Tnik (MGP_PahariEiJ_G0026339)	Pld1 (MGP_PahariEiJ_G0026338)	Tmem212 (MGP_PahariEiJ_G0026337)	Fndc3b (MGP_PahariEiJ_G0026336)	Ghsr (MGP_PahariEiJ_G0026335)	Tnfsf10 (MGP_PahariEiJ_G0026334)	Nceh1 (MGP_PahariEiJ_G0026333)	Ect2 (MGP_PahariEiJ_G0026332)	Spata16 (MGP_PahariEiJ_G0026331)	Nlgn1 (MGP_PahariEiJ_G0026330)	Naaladl2 (MGP_PahariEiJ_G0026329) ##22	Tbl1xr1 (MGP_PahariEiJ_G0026328)	Agtr1b (MGP_PahariEiJ_G0026327)	Cpb1 (MGP_PahariEiJ_G0026326)	Cpa3 (MGP_PahariEiJ_G0026325)	Gyg (MGP_PahariEiJ_G0026324)	Hltf (MGP_PahariEiJ_G0026323)	Hps3 (MGP_PahariEiJ_G0026322)	Cp (MGP_PahariEiJ_G0026321)	Crh (MGP_PahariEiJ_G0026320)	Trim55 (MGP_PahariEiJ_G0026319)	MGP_PahariEiJ_G0026318	Dnajc5b (MGP_PahariEiJ_G0026317)	Pde7a (MGP_PahariEiJ_G0026316)	Mtfr1 (MGP_PahariEiJ_G0026315)	Armc1 (MGP_PahariEiJ_G0026314)
Rat	MODERN SPECIES	11	Slc7a14 (ENSRNOG00000028097)	Rpl22l1 (ENSRNOG00000011817)	Eif5a2 (ENSRNOG00000011859)	Slc2a2 (ENSRNOG00000011875)	Tnik (ENSRNOG00000012422)	Pld1 (ENSRNOG00000028156)	Tmem212 (ENSRNOG00000012608)	Fndc3b (ENSRNOG00000024089)	Ghsr (ENSRNOG00000024119)	Tnfsf10 (ENSRNOG00000067968)	Nceh1 (ENSRNOG00000013313)	Ect2 (ENSRNOG00000024365)	Spata16 (ENSRNOG00000024521)	Nlgn1 (ENSRNOG00000032576)	ENSRNOG00000033028	Naaladl2 (ENSRNOG00000065021) ##22	Tbl1xr1 (ENSRNOG00000011216)	LOC120100784 (ENSRNOG00000031378)	ENSRNOG00000070560	Agtr1b (ENSRNOG00000010640)	Cpb1 (ENSRNOG00000030904)	Cpa3 (ENSRNOG00000011181)	Gyg1 (ENSRNOG00000011146)	Hltf (ENSRNOG00000000082)	Hps3 (ENSRNOG00000031406)	Cp (ENSRNOG00000011913)	ENSRNOG00000069706	ENSRNOG00000064644	Crh (ENSRNOG00000012703)	Trim55 (ENSRNOG00000012723)	Dnajc5b (ENSRNOG00000012851)
Upper Galilee mountains blind mole rat	MODERN SPECIES	535														Nlgn1 (ENSNGAG00000017041)	ENSNGAG00000018036	Naaladl2 (ENSNGAG00000020442) ##22
Lesser Egyptian jerboa	MODERN SPECIES	47	Cldn11 (ENSJJAG00000023284)	Slc7a14 (ENSJJAG00000000839)	ENSJJAG00000003376	Rpl22l1 (ENSJJAG00000016622)	ENSJJAG00000014550	Slc2a2 (ENSJJAG00000022990)	Tnik (ENSJJAG00000015526)	Pld1 (ENSJJAG00000017079)	Tmem212 (ENSJJAG00000019737)	ENSJJAG00000023375	Ghsr (ENSJJAG00000022390)	Nceh1 (ENSJJAG00000023562)	Ect2 (ENSJJAG00000001186)	Spata16 (ENSJJAG00000021398)	Nlgn1 (ENSJJAG00000018596)	Naaladl2 (ENSJJAG00000001804) ##22	ENSJJAG00000012112	Kcnmb2 (ENSJJAG00000021914)	Zmat3 (ENSJJAG00000004288)	Pik3ca (ENSJJAG00000021453)	Kcnmb3 (ENSJJAG00000023050)	ENSJJAG00000024013	Mfn1 (ENSJJAG00000019731)	ENSJJAG00000023681	Actl6a (ENSJJAG00000017810)	Mrpl47 (ENSJJAG00000020002)	Ndufb5 (ENSJJAG00000012502)	Usp13 (ENSJJAG00000018696)	Pex5l (ENSJJAG00000000620)	ENSJJAG00000023040	Ccdc39 (ENSJJAG00000016989)
Kangaroo rat	MODERN SPECIES	349	Skil (ENSDORG00000005119)	Cldn11 (ENSDORG00000015448)	Slc7a14 (ENSDORG00000015452)	Rpl22l1 (ENSDORG00000005926)	Eif5a2 (ENSDORG00000014800)	Slc2a2 (ENSDORG00000004280)	Tnik (ENSDORG00000004287)	Pld1 (ENSDORG00000011673)	ENSDORG00000027147	Ghsr (ENSDORG00000013291)	Tnfsf10 (ENSDORG00000025688)	Nceh1 (ENSDORG00000029369)	Ect2 (ENSDORG00000004898)	Spata16 (ENSDORG00000006630)	Nlgn1 (ENSDORG00000004771)	Naaladl2 (ENSDORG00000004371) ##22	Tbl1xr1 (ENSDORG00000016259)	Kcnmb2 (ENSDORG00000007718)
Lagomorpha	ANCESTRAL SPECIES	438														ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22
Rabbit	MODERN SPECIES	5	TNIK (ENSOCUG00000004598)	PLD1 (ENSOCUG00000014089)	TMEM212 (ENSOCUG00000014446)	FNDC3B (ENSOCUG00000004185)	GHSR (ENSOCUG00000007340)	TNLG6A (ENSOCUG00000014848)	NCEH1 (ENSOCUG00000005345)	ECT2 (ENSOCUG00000009484)	ENSOCUG00000030050	ENSOCUG00000035488	SPATA16 (ENSOCUG00000004746)	ENSOCUG00000037918	ENSOCUG00000032329	NLGN1 (ENSOCUG00000009269)	ENSOCUG00000032927	NAALADL2 (ENSOCUG00000002042) ##22	ENSOCUG00000006064	ENSOCUG00000020904	ENSOCUG00000031291	ENSOCUG00000031152	ENSOCUG00000039529	TBL1XR1 (ENSOCUG00000017078)	KCNMB2 (ENSOCUG00000005494)	ZMAT3 (ENSOCUG00000004658)	PIK3CA (ENSOCUG00000010631)	KCNMB3 (ENSOCUG00000010643)	MFN1 (ENSOCUG00000000928)	GNB4 (ENSOCUG00000000931)	ACTL6A (ENSOCUG00000017883)	MRPL47 (ENSOCUG00000017886)	NDUFB5 (ENSOCUG00000017887)
Pika	MODERN SPECIES	3683																NAALADL2 (ENSOPRG00000010376) ##22
Tree shrew	MODERN SPECIES	1576																NAALADL2 (ENSTBEG00000009053) ##22
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234598.a.b ##22
Common shrew	MODERN SPECIES	5605																NAALADL2 (ENSSARG00000003269) ##22
Hedgehog	MODERN SPECIES	7157																NAALADL2 (ENSEEUG00000003207) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Suina	ANCESTRAL SPECIES	1	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701
Pig	MODERN SPECIES	4	SLC2A2 (ENSSSCG00000020927)	TNIK (ENSSSCG00000028905)	PLD1 (ENSSSCG00000011750)	TMEM212 (ENSSSCG00000011751)	FNDC3B (ENSSSCG00000011752)	GHSR (ENSSSCG00000020906)	NCEH1 (ENSSSCG00000011755)	ECT2 (ENSSSCG00000035746)	SPATA16 (ENSSSCG00000038177)	ENSSSCG00000043958	ENSSSCG00000044967	NLGN1 (ENSSSCG00000011756)	ENSSSCG00000062281	ENSSSCG00000011758	ENSSSCG00000044757	NAALADL2 (ENSSSCG00000023871) ##22	TBL1XR1 (ENSSSCG00000011760)	ENSSSCG00000043076	ENSSSCG00000047877	KCNMB2 (ENSSSCG00000011761)	ZMAT3 (ENSSSCG00000033860)	PIK3CA (ENSSSCG00000030413)	KCNMB3 (ENSSSCG00000029240)	ENSSSCG00000031922	ZNF639 (ENSSSCG00000038443)	MFN1 (ENSSSCG00000039285)	GNB4 (ENSSSCG00000037583)	ACTL6A (ENSSSCG00000011762)	MRPL47 (ENSSSCG00000011763)	NDUFB5 (ENSSSCG00000011764)	USP13 (ENSSSCG00000011765)
Chacoan peccary	MODERN SPECIES	944	SLC7A14 (ENSCWAG00000011516)	RPL22L1 (ENSCWAG00000011588)	EIF5A2 (ENSCWAG00000011691)	SLC2A2 (ENSCWAG00000011744)	TNIK (ENSCWAG00000011893)	PLD1 (ENSCWAG00000012348)	TMEM212 (ENSCWAG00000012483)	FNDC3B (ENSCWAG00000012530)	ENSCWAG00000012660	GHSR (ENSCWAG00000012668)	TNFSF10 (ENSCWAG00000012722)	NCEH1 (ENSCWAG00000012786)	ECT2 (ENSCWAG00000012868)	SPATA16 (ENSCWAG00000013214)	NLGN1 (ENSCWAG00000013308)	NAALADL2 (ENSCWAG00000013390) ##22	TBL1XR1 (ENSCWAG00000013528)	ENSCWAG00000013558	KCNMB2 (ENSCWAG00000013602)	ZMAT3 (ENSCWAG00000013667)	PIK3CA (ENSCWAG00000013715)	KCNMB3 (ENSCWAG00000013862)	ZNF639 (ENSCWAG00000014049)	MFN1 (ENSCWAG00000014074)	GNB4 (ENSCWAG00000014110)	ACTL6A (ENSCWAG00000014148)	MRPL47 (ENSCWAG00000014208)	ENSCWAG00000014342	ENSCWAG00000014364	USP13 (ENSCWAG00000014441)	ENSCWAG00000014493
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Cetacea	ANCESTRAL SPECIES	10	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT01030000239371	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT01030000239371	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Dolphin	MODERN SPECIES	2119																NAALADL2 (ENSTTRG00000016988) ##22
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT00940000158435.i	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT00390000006503.a.l	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00960000192355	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00510000046985.h.a.jd	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Beluga whale	MODERN SPECIES	111	CLDN11 (ENSDLEG00000009618)	SLC7A14 (ENSDLEG00000009599)	EIF5A2 (ENSDLEG00000009565)	SLC2A2 (ENSDLEG00000009545)	TNIK (ENSDLEG00000009325)	PLD1 (ENSDLEG00000008664)	TMEM212 (ENSDLEG00000008541)	FNDC3B (ENSDLEG00000008225)	GHSR (ENSDLEG00000008159)	TNFSF10 (ENSDLEG00000008145)	NCEH1 (ENSDLEG00000015030)	ECT2 (ENSDLEG00000014893)	SPATA16 (ENSDLEG00000014859)	NLGN1 (ENSDLEG00000014852)	ENSDLEG00000014835	NAALADL2 (ENSDLEG00000014814) ##22	ENSDLEG00000014801	TBL1XR1 (ENSDLEG00000014786)	KCNMB2 (ENSDLEG00000014764)	ENSDLEG00000014756	ZMAT3 (ENSDLEG00000014744)	PIK3CA (ENSDLEG00000014721)	ENSDLEG00000014709	ZNF639 (ENSDLEG00000014693)	MFN1 (ENSDLEG00000014635)	GNB4 (ENSDLEG00000014597)	ENSDLEG00000014581	ACTL6A (ENSDLEG00000014465)	MRPL47 (ENSDLEG00000014407)	ENSDLEG00000014388	USP13 (ENSDLEG00000014351)
Narwhal	MODERN SPECIES	297	EIF5A2 (ENSMMNG00015002984)	SLC2A2 (ENSMMNG00015002963)	ENSMMNG00015002950	TNIK (ENSMMNG00015002861)	PLD1 (ENSMMNG00015002765)	TMEM212 (ENSMMNG00015002732)	FNDC3B (ENSMMNG00015002705)	ENSMMNG00015002696	GHSR (ENSMMNG00015002677)	TNFSF10 (ENSMMNG00015002655)	NCEH1 (ENSMMNG00015002627)	ECT2 (ENSMMNG00015002489)	SPATA16 (ENSMMNG00015002430)	NLGN1 (ENSMMNG00015002410)	ENSMMNG00015002378	NAALADL2 (ENSMMNG00015002350) ##22	ENSMMNG00015002332	TBL1XR1 (ENSMMNG00015002265)	ENSMMNG00015002145	KCNMB2 (ENSMMNG00015002126)	ENSMMNG00015002111	ZMAT3 (ENSMMNG00015002091)	PIK3CA (ENSMMNG00015002009)	ENSMMNG00015001952	ENSMMNG00015001936	MFN1 (ENSMMNG00015001899)	GNB4 (ENSMMNG00015001871)	ENSMMNG00015001853	ACTL6A (ENSMMNG00015001826)	MRPL47 (ENSMMNG00015001795)	ENSMMNG00015001756
Vaquita	MODERN SPECIES	15	ENSPSNG00000002501	ENSPSNG00000002516	EIF5A2 (ENSPSNG00000002538)	SLC2A2 (ENSPSNG00000002561)	TNIK (ENSPSNG00000002658)	PLD1 (ENSPSNG00000002783)	TMEM212 (ENSPSNG00000002815)	FNDC3B (ENSPSNG00000003283)	GHSR (ENSPSNG00000004137)	TNFSF10 (ENSPSNG00000004177)	NCEH1 (ENSPSNG00000004193)	ECT2 (ENSPSNG00000004241)	SPATA16 (ENSPSNG00000004352)	NLGN1 (ENSPSNG00000004386)	ENSPSNG00000004415	NAALADL2 (ENSPSNG00000004440) ##22	ENSPSNG00000004485	ENSPSNG00000004503	ENSPSNG00000004516	TBL1XR1 (ENSPSNG00000004528)	KCNMB2 (ENSPSNG00000000137)	ENSPSNG00000000161	ZMAT3 (ENSPSNG00000000179)	ENSPSNG00000000193	PIK3CA (ENSPSNG00000000243)	ENSPSNG00000000310	ZNF639 (ENSPSNG00000000337)	MFN1 (ENSPSNG00000000400)	GNB4 (ENSPSNG00000000439)	ACTL6A (ENSPSNG00000000482)	ENSPSNG00000000504
Sperm whale	MODERN SPECIES		SLC7A14 (ENSPCTG00005001634)	ENSPCTG00005001650	RPL22L1 (ENSPCTG00005001662)	EIF5A2 (ENSPCTG00005001682)	SLC2A2 (ENSPCTG00005001701)	TNIK (ENSPCTG00005001786)	PLD1 (ENSPCTG00005001936)	TMEM212 (ENSPCTG00005002038)	FNDC3B (ENSPCTG00005002082)	GHSR (ENSPCTG00005002161)	TNFSF10 (ENSPCTG00005002181)	NCEH1 (ENSPCTG00005002205)	ECT2 (ENSPCTG00005002261)	SPATA16 (ENSPCTG00005002355)	NLGN1 (ENSPCTG00005002376)	NAALADL2 (ENSPCTG00005002399) ##22	ENSPCTG00005002425	ENSPCTG00005002436	TBL1XR1 (ENSPCTG00005002457)	KCNMB2 (ENSPCTG00005002495)	ENSPCTG00005002512	ZMAT3 (ENSPCTG00005002527)	PIK3CA (ENSPCTG00005002544)	ZNF639 (ENSPCTG00005002565)	MFN1 (ENSPCTG00005002577)	GNB4 (ENSPCTG00005002602)	ACTL6A (ENSPCTG00005002626)	MRPL47 (ENSPCTG00005002655)	NDUFB5 (ENSPCTG00005002691)	USP13 (ENSPCTG00005002736)	PEX5L (ENSPCTG00005002908)
Blue whale	MODERN SPECIES	15	SLC7A14 (ENSBMSG00010001566)	RPL22L1 (ENSBMSG00010001581)	EIF5A2 (ENSBMSG00010001605)	SLC2A2 (ENSBMSG00010001617)	TNIK (ENSBMSG00010001841)	PLD1 (ENSBMSG00010003385)	TMEM212 (ENSBMSG00010003424)	FNDC3B (ENSBMSG00010003434)	GHSR (ENSBMSG00010003443)	TNFSF10 (ENSBMSG00010003448)	NCEH1 (ENSBMSG00010003456)	ECT2 (ENSBMSG00010003476)	SPATA16 (ENSBMSG00010003514)	NLGN1 (ENSBMSG00010003524)	ENSBMSG00010003532	NAALADL2 (ENSBMSG00010003541) ##22	ENSBMSG00010003550	ENSBMSG00010003556	ENSBMSG00010003561	TBL1XR1 (ENSBMSG00010003569)	KCNMB2 (ENSBMSG00010003583)	ENSBMSG00010003587	ZMAT3 (ENSBMSG00010003591)	FZD5 (ENSBMSG00010003645)	ENSBMSG00010003648	PLEKHM3 (ENSBMSG00010003654)	ENSBMSG00010003667	CRYGD (ENSBMSG00010003676)	CRYGC (ENSBMSG00010003687)	ENSBMSG00010003697	CRYGB (ENSBMSG00010003704)
Pecora	ANCESTRAL SPECIES	8	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.y.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Yarkand deer	MODERN SPECIES	10	EIF5A2 (ENSCHYG00000009195)	SLC2A2 (ENSCHYG00000009000)	TNIK (ENSCHYG00000006876)	PLD1 (ENSCHYG00000006194)	TMEM212 (ENSCHYG00000006094)	FNDC3B (ENSCHYG00000005907)	GHSR (ENSCHYG00000005817)	TNFSF10 (ENSCHYG00000005789)	NCEH1 (ENSCHYG00000005728)	ENSCHYG00000005713	ECT2 (ENSCHYG00000005081)	SPATA16 (ENSCHYG00000004961)	ENSCHYG00000004463	ENSCHYG00000022159	NLGN1 (ENSCHYG00000022086)	NAALADL2 (ENSCHYG00000021681) ##22	ENSCHYG00000021620	ENSCHYG00000021600	TBL1XR1 (ENSCHYG00000021350)	ENSCHYG00000021293	KCNMB2 (ENSCHYG00000021244)	ZMAT3 (ENSCHYG00000021162)	PIK3CA (ENSCHYG00000020926)	ENSCHYG00000020552	ZNF639 (ENSCHYG00000020480)	MFN1 (ENSCHYG00000020157)	GNB4 (ENSCHYG00000020053)	ACTL6A (ENSCHYG00000019950)	MRPL47 (ENSCHYG00000019750)	NDUFB5 (ENSCHYG00000019479)	USP13 (ENSCHYG00000018967)
Percora_a	ANCESTRAL SPECIES	7	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509.y.a	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Bovidae	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00940000154509.y.a	ENSGT00390000003738.a.b	ENSGT00960000189143	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Caprinae	ANCESTRAL SPECIES	8	ENSGT00940000154509.z	ENSGT00390000003738.a.b	ENSGT00960000189143	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000161884.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701
Goat	MODERN SPECIES		EIF5A2 (ENSCHIG00000017523)	ENSCHIG00000014405	SLC2A2 (ENSCHIG00000008516)	TNIK (ENSCHIG00000017624)	PLD1 (ENSCHIG00000010044)	TMEM212 (ENSCHIG00000019090)	FNDC3B (ENSCHIG00000023878)	GHSR (ENSCHIG00000009656)	TNFSF10 (ENSCHIG00000016856)	NCEH1 (ENSCHIG00000024248)	ECT2 (ENSCHIG00000025581)	ENSCHIG00000013430	SPATA16 (ENSCHIG00000023395)	ENSCHIG00000009834	NLGN1 (ENSCHIG00000026919)	NAALADL2 (ENSCHIG00000018744) ##22	TBL1XR1 (ENSCHIG00000010626)	KCNMB2 (ENSCHIG00000020065)	ZMAT3 (ENSCHIG00000025074)	PIK3CA (ENSCHIG00000016154)	KCNMB3 (ENSCHIG00000021624)	ZNF639 (ENSCHIG00000025519)	MFN1 (ENSCHIG00000021326)	GNB4 (ENSCHIG00000011036)	ACTL6A (ENSCHIG00000017016)	MRPL47 (ENSCHIG00000013922)	NDUFB5 (ENSCHIG00000024994)	USP13 (ENSCHIG00000020163)	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885)	TTC14 (ENSCHIG00000013993)
Rambouillet Sheep	MODERN SPECIES		SLC7A14 (ENSOARG00020001626)	ENSOARG00020001599	EIF5A2 (ENSOARG00020001566)	SLC2A2 (ENSOARG00020001524)	TNIK (ENSOARG00020001197)	PLD1 (ENSOARG00020001072)	TMEM212 (ENSOARG00020001050)	GHSR (ENSOARG00020001032)	TNFSF10 (ENSOARG00020001008)	FNDC3B (ENSOARG00020000887)	NCEH1 (ENSOARG00020000787)	ECT2 (ENSOARG00020000567)	SPATA16 (ENSOARG00020000484)	ENSOARG00020000457	NLGN1 (ENSOARG00020000438)	NAALADL2 (ENSOARG00020000356) ##22	ENSOARG00020000331	TBL1XR1 (ENSOARG00020000203)	ENSOARG00020000133	KCNMB2 (ENSOARG00020000078)	ZMAT3 (ENSOARG00020000075)	PIK3CA (ENSOARG00020010030)	ENSOARG00020009952	ZNF639 (ENSOARG00020009893)	MFN1 (ENSOARG00020009679)	GNB4 (ENSOARG00020009587)	ACTL6A (ENSOARG00020009394)	MRPL47 (ENSOARG00020009272)	NDUFB5 (ENSOARG00020009071)	USP13 (ENSOARG00020008860)	PEX5L (ENSOARG00020007531)
Bovinae	ANCESTRAL SPECIES	6	ENSGT00960000190743	ENSGT00940000154509.y.a	ENSGT00390000003738.a.b	ENSGT00960000189143	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Bos	ANCESTRAL SPECIES	7	ENSGT00960000189143	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931.f	ENSGT00390000013701
Bos_a	ANCESTRAL SPECIES	5	ENSGT00960000189143	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931.f	ENSGT00390000013701	ENSGT00390000015010
Domestic yak	MODERN SPECIES		PLD1 (ENSBGRG00000004430)	TMEM212 (ENSBGRG00000004399)	ENSBGRG00000004377	FNDC3B (ENSBGRG00000003929)	GHSR (ENSBGRG00000003884)	TNFSF10 (ENSBGRG00000003840)	NCEH1 (ENSBGRG00000003789)	ECT2 (ENSBGRG00000003533)	ENSBGRG00000003513	SPATA16 (ENSBGRG00000003501)	ENSBGRG00000003487	ENSBGRG00000003486	NLGN1 (ENSBGRG00000003457)	ENSBGRG00000003453	ENSBGRG00000003433	NAALADL2 (ENSBGRG00000003389) ##22	TBL1XR1 (ENSBGRG00000003307)	ENSBGRG00000003290	KCNMB2 (ENSBGRG00000003278)	ZMAT3 (ENSBGRG00000003264)	PIK3CA (ENSBGRG00000003231)	ENSBGRG00000003201	ENSBGRG00000003193	ENSBGRG00000003185	MFN1 (ENSBGRG00000003142)	GNB4 (ENSBGRG00000003113)	ACTL6A (ENSBGRG00000003086)	MRPL47 (ENSBGRG00000003051)	NDUFB5 (ENSBGRG00000003013)	USP13 (ENSBGRG00000002861)	ENSBGRG00000002451
Wild yak	MODERN SPECIES	1945															ENSBMUG00000008072	ENSBMUG00000008063 ##22
Bos_b	ANCESTRAL SPECIES	5	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00950000183087.A.b.b	ENSGT00940000161884.d	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931.f	ENSGT00390000013701
Hybrid Bos Indicus	MODERN SPECIES		PLD1 (ENSBIXG00005015980)	TMEM212 (ENSBIXG00005016059)	FNDC3B (ENSBIXG00005016325)	GHSR (ENSBIXG00005016403)	TNFSF10 (ENSBIXG00005016416)	NCEH1 (ENSBIXG00005016476)	ECT2 (ENSBIXG00005016640)	SPATA16 (ENSBIXG00005016707)	ENSBIXG00005016731	ENSBIXG00005016763	ENSBIXG00005016780	NLGN1 (ENSBIXG00005016835)	ENSBIXG00005007046	ENSBIXG00005016905	ENSBIXG00005016911	NAALADL2 (ENSBIXG00005002757) ##22	TBL1XR1 (ENSBIXG00005002780)	ENSBIXG00005006866	ENSBIXG00005002798 #14	KCNMB2 (ENSBIXG00005017216)	ZMAT3 (ENSBIXG00005017242)	ENSBIXG00005017249	PIK3CA (ENSBIXG00005017279)	KCNMB3 (ENSBIXG00005002817)	ZNF639 (ENSBIXG00005017422)	ENSBIXG00005017430	MFN1 (ENSBIXG00005007801)	GNB4 (ENSBIXG00005017563)	ACTL6A (ENSBIXG00005017648)	MRPL47 (ENSBIXG00005017737)	NDUFB5 (ENSBIXG00005017808)
Cow	MODERN SPECIES		TNIK (ENSBTAG00000011742)	TMSB4 (ENSBTAG00000051079)	ENSBTAG00000049814	PLD1 (ENSBTAG00000017490)	TMEM212 (ENSBTAG00000006174)	FNDC3B (ENSBTAG00000019376)	GHSR (ENSBTAG00000010874)	TNFSF10 (ENSBTAG00000018994)	NCEH1 (ENSBTAG00000020073)	ECT2 (ENSBTAG00000023814)	SPATA16 (ENSBTAG00000031802)	ENSBTAG00000012401	ENSBTAG00000046279	NLGN1 (ENSBTAG00000031891)	ENSBTAG00000054712	NAALADL2 (ENSBTAG00000048493) ##22	ENSBTAG00000054926	TBL1XR1 (ENSBTAG00000021910)	ENSBTAG00000048417 #14	ENSBTAG00000052803	GTPBP6 (ENSBTAG00000054315)	PLCXD1 (ENSBTAG00000035144)	ENSBTAG00000050181	KCNMB2 (ENSBTAG00000011377)	ZMAT3 (ENSBTAG00000012463)	ENSBTAG00000054655	PIK3CA (ENSBTAG00000009232)	KCNMB3 (ENSBTAG00000009235)	ZNF639 (ENSBTAG00000037393)	ENSBTAG00000050978	MFN1 (ENSBTAG00000010485)
American bison	MODERN SPECIES	3086														NLGN1 (ENSBBBG00000011941)	ENSBBBG00000011937	NAALADL2 (ENSBBBG00000011932) ##22
Siberian musk deer	MODERN SPECIES	139	SLC2A2 (ENSMMSG00000004156)	TNIK (ENSMMSG00000004049)	PLD1 (ENSMMSG00000003941)	TMEM212 (ENSMMSG00000003921)	FNDC3B (ENSMMSG00000003904)	GHSR (ENSMMSG00000003895)	TNFSF10 (ENSMMSG00000003888)	ENSMMSG00000003878	NCEH1 (ENSMMSG00000003867)	ECT2 (ENSMMSG00000003783)	SPATA16 (ENSMMSG00000003744)	ENSMMSG00000003725	ENSMMSG00000003711	NLGN1 (ENSMMSG00000003692)	ENSMMSG00000003679	NAALADL2 (ENSMMSG00000003624) ##22	TBL1XR1 (ENSMMSG00000003575)	KCNMB2 (ENSMMSG00000003557)	ENSMMSG00000003544	ZMAT3 (ENSMMSG00000003531)	PIK3CA (ENSMMSG00000003505)	KCNMB3 (ENSMMSG00000003476)	ZNF639 (ENSMMSG00000003462)	MFN1 (ENSMMSG00000003440)	GNB4 (ENSMMSG00000003419)	ACTL6A (ENSMMSG00000003389)	MRPL47 (ENSMMSG00000003361)	NDUFB5 (ENSMMSG00000003341)	USP13 (ENSMMSG00000003298)	PEX5L (ENSMMSG00000001803)	TTC14 (ENSMMSG00000001675)
Camelidae	ANCESTRAL SPECIES		ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701
Alpaca	MODERN SPECIES	2193																NAALADL2 (ENSVPAG00000010588) ##22
Arabian camel	MODERN SPECIES		SLC2A2 (ENSCDRG00005005723)	TNIK (ENSCDRG00005005860)	PLD1 (ENSCDRG00005008849)	TMEM212 (ENSCDRG00005009492)	ENSCDRG00005009531	FNDC3B (ENSCDRG00005009638)	GHSR (ENSCDRG00005011555)	TNFSF10 (ENSCDRG00005011611)	NCEH1 (ENSCDRG00005000005)	ENSCDRG00005000009	ECT2 (ENSCDRG00005000011)	ENSCDRG00005000019	SPATA16 (ENSCDRG00005000021)	NLGN1 (ENSCDRG00005000025)	ENSCDRG00005000026	NAALADL2 (ENSCDRG00005000032) ##22	ENSCDRG00005000048	TBL1XR1 (ENSCDRG00005000072)	KCNMB2 (ENSCDRG00005000101)	ENSCDRG00005000141	ZMAT3 (ENSCDRG00005000152)	PIK3CA (ENSCDRG00005000192)	ENSCDRG00005000278	ENSCDRG00005000287	ZNF639 (ENSCDRG00005000309)	MFN1 (ENSCDRG00005000323)	GNB4 (ENSCDRG00005000360)	ACTL6A (ENSCDRG00005000384)	ENSCDRG00005000409	MRPL47 (ENSCDRG00005000428)	NDUFB5 (ENSCDRG00005000451)
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Chiroptera	ANCESTRAL SPECIES	13	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Megabat	MODERN SPECIES	2510																NAALADL2 (ENSPVAG00000011740) ##22
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Greater horseshoe bat	MODERN SPECIES	11	ENSRFEG00010001102	EIF5A2 (ENSRFEG00010001071)	SLC2A2 (ENSRFEG00010001037)	TNIK (ENSRFEG00010000693)	PLD1 (ENSRFEG00010000516)	TMEM212 (ENSRFEG00010000449)	FNDC3B (ENSRFEG00010000387)	GHSR (ENSRFEG00010000370)	TNFSF10 (ENSRFEG00010000343)	NCEH1 (ENSRFEG00010000317)	ENSRFEG00010000278	SPATA16 (ENSRFEG00010000235)	ENSRFEG00010000208	NLGN1 (ENSRFEG00010000199)	ENSRFEG00010000186	NAALADL2 (ENSRFEG00010000176) ##22	ENSRFEG00010000156	TBL1XR1 (ENSRFEG00010000145)	KCNMB2 (ENSRFEG00010000136)	ZMAT3 (ENSRFEG00010000131)	ENSRFEG00010000122	PIK3CA (ENSRFEG00010021761)	ENSRFEG00010021748	ZNF639 (ENSRFEG00010021744)	MFN1 (ENSRFEG00010021730)	GNB4 (ENSRFEG00010021722)	ACTL6A (ENSRFEG00010021704)	MRPL47 (ENSRFEG00010021687)	ENSRFEG00010021670	USP13 (ENSRFEG00010021639)	ENSRFEG00010021630
Equus	ANCESTRAL SPECIES	19	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00390000012420.j	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00990000205077	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931
Horse	MODERN SPECIES	10	RPL22L1 (ENSECAG00000018894)	EIF5A2 (ENSECAG00000022755)	SLC2A2 (ENSECAG00000000414)	TNIK (ENSECAG00000018307)	PLD1 (ENSECAG00000022638)	TMEM212 (ENSECAG00000028524)	ENSECAG00000044903	FNDC3B (ENSECAG00000019423)	GHSR (ENSECAG00000017722)	TNFSF10 (ENSECAG00000019391)	ENSECAG00000008286	NCEH1 (ENSECAG00000010106)	ECT2 (ENSECAG00000014059)	SPATA16 (ENSECAG00000012480)	NLGN1 (ENSECAG00000012940)	NAALADL2 (ENSECAG00000016282) ##22	ENSECAG00000045243	ENSECAG00000052492	ENSECAG00000053463	ENSECAG00000049777	ENSECAG00000048291	ENSECAG00000049616	TBL1XR1 (ENSECAG00000008249)	KCNMB2 (ENSECAG00000009088)	ZMAT3 (ENSECAG00000012784)	PIK3CA (ENSECAG00000015019)	KCNMB3 (ENSECAG00000014580)	ZNF639 (ENSECAG00000015691)	MFN1 (ENSECAG00000018551)	GNB4 (ENSECAG00000008196)	ACTL6A (ENSECAG00000013622)
Donkey	MODERN SPECIES	25	RPL22L1 (ENSEASG00005027584)	EIF5A2 (ENSEASG00005017215)	SLC2A2 (ENSEASG00005017211)	TNIK (ENSEASG00005017205)	PLD1 (ENSEASG00005017200)	TMEM212 (ENSEASG00005017199)	FNDC3B (ENSEASG00005017198)	GHSR (ENSEASG00005026008)	TNFSF10 (ENSEASG00005032698)	ENSEASG00005024553	ENSEASG00005038780	NCEH1 (ENSEASG00005017188)	ECT2 (ENSEASG00005016949)	SPATA16 (ENSEASG00005016917)	NLGN1 (ENSEASG00005033409)	NAALADL2 (ENSEASG00005016907) ##22	ENSEASG00005016908	ENSEASG00005036049	TBL1XR1 (ENSEASG00005016897)	KCNMB2 (ENSEASG00005016891)	ZMAT3 (ENSEASG00005016887)	PIK3CA (ENSEASG00005016884)	ENSEASG00005016880	ZNF639 (ENSEASG00005016879)	MFN1 (ENSEASG00005016871)	GNB4 (ENSEASG00005016867)	ACTL6A (ENSEASG00005016862)	MRPL47 (ENSEASG00005016858)	NDUFB5 (ENSEASG00005016854)	USP13 (ENSEASG00005016850)	PEX5L (ENSEASG00005016845)
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701
Caniformia	ANCESTRAL SPECIES		ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000154509.q.a	ENSGT00390000003738.a.b.d	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401
Ursus	ANCESTRAL SPECIES	22	ENSGT00940000154509.q.a	ENSGT00390000003738.a.b.d	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT01010000223088	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401
Polar bear	MODERN SPECIES	270	EIF5A2 (ENSUMAG00000010451)	SLC2A2 (ENSUMAG00000010439)	TNIK (ENSUMAG00000010387)	ENSUMAG00000010372	PLD1 (ENSUMAG00000009364)	TMEM212 (ENSUMAG00000009254)	FNDC3B (ENSUMAG00000008283)	GHSR (ENSUMAG00000008081)	TNFSF10 (ENSUMAG00000008069)	NCEH1 (ENSUMAG00000008062)	ENSUMAG00000008030	ENSUMAG00000008026	SPATA16 (ENSUMAG00000008006)	ENSUMAG00000007969	NLGN1 (ENSUMAG00000007957)	NAALADL2 (ENSUMAG00000007923) ##22	ENSUMAG00000007910	ENSUMAG00000007898	TBL1XR1 (ENSUMAG00000007886)	ENSUMAG00000007876	KCNMB2 (ENSUMAG00000007875)	ZMAT3 (ENSUMAG00000007847)	PIK3CA (ENSUMAG00000007616)	KCNMB3 (ENSUMAG00000007593)	ZNF639 (ENSUMAG00000007588)	MFN1 (ENSUMAG00000007570)	GNB4 (ENSUMAG00000007558)	ACTL6A (ENSUMAG00000007556)	MRPL47 (ENSUMAG00000007554)	NDUFB5 (ENSUMAG00000007550)	USP13 (ENSUMAG00000007534)
Giant Panda	MODERN SPECIES		CLDN11 (ENSAMEG00000029228)	SLC7A14 (ENSAMEG00000004703)	ENSAMEG00000004730	EIF5A2 (ENSAMEG00000025642)	SLC2A2 (ENSAMEG00000004758)	TNIK (ENSAMEG00000004798)	PLD1 (ENSAMEG00000000864)	TMEM212 (ENSAMEG00000000944)	FNDC3B (ENSAMEG00000000947)	GHSR (ENSAMEG00000000992)	TNFSF10 (ENSAMEG00000000999)	NCEH1 (ENSAMEG00000026170)	ECT2 (ENSAMEG00000001035)	SPATA16 (ENSAMEG00000001100)	NLGN1 (ENSAMEG00000001461)	NAALADL2 (ENSAMEG00000010705) ##22	ENSAMEG00000029929	ENSAMEG00000031369	TBL1XR1 (ENSAMEG00000010711)	ENSAMEG00000028254	KCNMB2 (ENSAMEG00000010737)	ZMAT3 (ENSAMEG00000010742)	PIK3CA (ENSAMEG00000010753)	KCNMB3 (ENSAMEG00000010807)	ZNF639 (ENSAMEG00000010809)	MFN1 (ENSAMEG00000010816)	GNB4 (ENSAMEG00000010842)	ACTL6A (ENSAMEG00000010856)	MRPL47 (ENSAMEG00000010876)	NDUFB5 (ENSAMEG00000023963)	USP13 (ENSAMEG00000010896)
Mustelinae	ANCESTRAL SPECIES	20	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.z	ENSGT00940000157401	ENSGT00960000193213	ENSGT00940000155931	ENSGT00390000013701
American mink	MODERN SPECIES	187																NAALADL2 (ENSNVIG00000022781) ##22	ENSNVIG00000022786	TBL1R (ENSNVIG00000022787)	ENSNVIG00000022790	KCNMB2 (ENSNVIG00000022792)
Ferret	MODERN SPECIES	216	SLC2A2 (ENSMPUG00000017116)	TNIK (ENSMPUG00000017145)	ENSMPUG00000017151	PLD1 (ENSMPUG00000017152)	TMEM212 (ENSMPUG00000017156)	FNDC3B (ENSMPUG00000017158)	GHSR (ENSMPUG00000017162)	TNFSF10 (ENSMPUG00000017166)	NCEH1 (ENSMPUG00000017172)	ECT2 (ENSMPUG00000017173)	SPATA16 (ENSMPUG00000017177)	ENSMPUG00000017179	ENSMPUG00000017180	ENSMPUG00000018916	ENSMPUG00000017193	NAALADL2 (ENSMPUG00000017199) ##22	ENSMPUG00000017200	TBL1XR1 (ENSMPUG00000017202)	KCNMB2 (ENSMPUG00000017205)	ZMAT3 (ENSMPUG00000017206)	PIK3CA (ENSMPUG00000017207)	KCNMB3 (ENSMPUG00000017208)	ZNF639 (ENSMPUG00000017209)	MFN1 (ENSMPUG00000017210)	GNB4 (ENSMPUG00000017211)	ACTL6A (ENSMPUG00000017212)	MRPL47 (ENSMPUG00000017214)	NDUFB5 (ENSMPUG00000017216)	USP13 (ENSMPUG00000017217)	PEX5L (ENSMPUG00000017218)
Canidae	ANCESTRAL SPECIES	43	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00980000198999	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT01030000235502
Canis_lupus	ANCESTRAL SPECIES	41	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00980000198999	ENSGT00940000163015	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT01030000235502
Dog	MODERN SPECIES	27	ENSCAFG00845023102	ENSCAFG00845023141	EIF5A2 (ENSCAFG00845023206)	SLC2A2 (ENSCAFG00845023320)	ENSCAFG00845023386	TNIK (ENSCAFG00845023590)	PLD1 (ENSCAFG00845024801)	TMEM212 (ENSCAFG00845025495)	FNDC3B (ENSCAFG00845025535)	GHSR (ENSCAFG00845025708)	TNFSF10 (ENSCAFG00845025786)	NCEH1 (ENSCAFG00845025863)	ECT2 (ENSCAFG00845025956)	SPATA16 (ENSCAFG00845014909)	NLGN1 (ENSCAFG00845015115)	NAALADL2 (ENSCAFG00845015266) ##22	ENSCAFG00845015434	TBL1XR1 (ENSCAFG00845015474)	KCNMB2 (ENSCAFG00845015513)	ENSCAFG00845015561	ENSCAFG00845015597
Dingo	MODERN SPECIES	317	EIF5A2 (ENSCAFG00020003939)	ENSCAFG00020003946	SLC2A2 (ENSCAFG00020003949)	ENSCAFG00020003964	ENSCAFG00020003970	ENSCAFG00020004120	PLD1 (ENSCAFG00020004212)	TMEM212 (ENSCAFG00020004412)	FNDC3B (ENSCAFG00020004443)	GHSR (ENSCAFG00020004605)	TNFSF10 (ENSCAFG00020004618)	ENSCAFG00020004622	ECT2 (ENSCAFG00020004635)	SPATA16 (ENSCAFG00020004681)	NLGN1 (ENSCAFG00020004713)	NAALADL2 (ENSCAFG00020004751) ##22	ENSCAFG00020004812	TBL1XR1 (ENSCAFG00020004830)	KCNMB2 (ENSCAFG00020004843)	ENSCAFG00020004855
Red fox	MODERN SPECIES	66	EIF5A2 (ENSVVUG00000001140)	ENSVVUG00000001154	SLC2A2 (ENSVVUG00000001163)	ENSVVUG00000001177	TNIK (ENSVVUG00000001221)	PLD1 (ENSVVUG00000001416)	TMEM212 (ENSVVUG00000001592)	FNDC3B (ENSVVUG00000001630)	GHSR (ENSVVUG00000001716)	TNFSF10 (ENSVVUG00000001732)	NCEH1 (ENSVVUG00000001743)	ENSVVUG00000001754	ECT2 (ENSVVUG00000001784)	SPATA16 (ENSVVUG00000001877)	NLGN1 (ENSVVUG00000001921)	NAALADL2 (ENSVVUG00000001942) ##22	ENSVVUG00000001970
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931	ENSGT00390000013701
Panthera	ANCESTRAL SPECIES	12	ENSGT00390000005599.l.a.a	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128	ENSGT00940000155931
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT00940000158200	ENSGT01030000234598.a.b ##22	ENSGT00860000135711	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00950000182802.B.a.a.a.b.a.b	ENSGT00390000009980	ENSGT00940000157401	ENSGT00910000147128
lion	MODERN SPECIES	9	ENSPLOG00000012571	RPL22L1 (ENSPLOG00000012600)	EIF5A2 (ENSPLOG00000012678)	SLC2A2 (ENSPLOG00000012729)	TNIK (ENSPLOG00000012878)	PLD1 (ENSPLOG00000013081)	TMEM212 (ENSPLOG00000013184)	FNDC3B (ENSPLOG00000013235)	GHSR (ENSPLOG00000013263)	TNFSF10 (ENSPLOG00000013296)	NCEH1 (ENSPLOG00000013340)	ECT2 (ENSPLOG00000013475)	SPATA16 (ENSPLOG00000013657)	NLGN1 (ENSPLOG00000013747)	ENSPLOG00000013820	NAALADL2 (ENSPLOG00000013868) ##22	ENSPLOG00000014025	TBL1XR1 (ENSPLOG00000014076)	ENSPLOG00000014169	KCNMB2 (ENSPLOG00000014199)	ZMAT3 (ENSPLOG00000014350)	PIK3CA (ENSPLOG00000014416)	KCNMB3 (ENSPLOG00000014563)	ZNF639 (ENSPLOG00000014743)	MFN1 (ENSPLOG00000014785)	GNB4 (ENSPLOG00000014871)	ACTL6A (ENSPLOG00000014922)	MRPL47 (ENSPLOG00000015006)	ENSPLOG00000015221	NDUFB5 (ENSPLOG00000015246)	USP13 (ENSPLOG00000015359)
leopard	MODERN SPECIES	41	EIF5A2 (ENSPPRG00000012743)	SLC2A2 (ENSPPRG00000012219)	TNIK (ENSPPRG00000011685)	PLD1 (ENSPPRG00000023176)	TMEM212 (ENSPPRG00000023938)	FNDC3B (ENSPPRG00000024055)	GHSR (ENSPPRG00000017062)	TNFSF10 (ENSPPRG00000016479)	NCEH1 (ENSPPRG00000015653)	ECT2 (ENSPPRG00000014700)	ENSPPRG00000011572	SPATA16 (ENSPPRG00000010517)	ENSPPRG00000010020	NLGN1 (ENSPPRG00000009803)	ENSPPRG00000009449	NAALADL2 (ENSPPRG00000008765) ##22	ENSPPRG00000008440	ENSPPRG00000008283	ENSPPRG00000014311	TBL1XR1 (ENSPPRG00000007211)	KCNMB2 (ENSPPRG00000005379)	ZMAT3 (ENSPPRG00000004407)	PIK3CA (ENSPPRG00000003667)	KCNMB3 (ENSPPRG00000003525)	ZNF639 (ENSPPRG00000002569)	MFN1 (ENSPPRG00000001517)	GNB4 (ENSPPRG00000001295)	ENSPPRG00000022425	ACTL6A (ENSPPRG00000000310)	MRPL47 (ENSPPRG00000000050)	ENSPPRG00000022339
Tiger	MODERN SPECIES	258																NAALADL2 (ENSPTIG00000001644) ##22	ENSPTIG00000000891	ENSPTIG00000000073	ENSPTIG00000000036	TBL1XR1 (ENSPTIG00000020477)
Cat	MODERN SPECIES	240	SLC7A14 (ENSFCAG00000011219)	RPL22L1 (ENSFCAG00000046255)	EIF5A2 (ENSFCAG00000008098)	SLC2A2 (ENSFCAG00000011216)	TNIK (ENSFCAG00000011217)	PLD1 (ENSFCAG00000007116)	TMEM212 (ENSFCAG00000011654)	FNDC3B (ENSFCAG00000000762)	GHSR (ENSFCAG00000011266)	TNFSF10 (ENSFCAG00000045697)	NCEH1 (ENSFCAG00000028457)	ECT2 (ENSFCAG00000018600)	SPATA16 (ENSFCAG00000010284)	NLGN1 (ENSFCAG00000008779)	ENSFCAG00000038414	NAALADL2 (ENSFCAG00000041177) ##22	TBL1XR1 (ENSFCAG00000002457)	ENSFCAG00000041738	KCNMB2 (ENSFCAG00000006044)	ZMAT3 (ENSFCAG00000014578)	PIK3CA (ENSFCAG00000018737)	KCNMB3 (ENSFCAG00000041547)	ZNF639 (ENSFCAG00000012004)	MFN1 (ENSFCAG00000028181)	GNB4 (ENSFCAG00000039564)	ACTL6A (ENSFCAG00000012364)	MRPL47 (ENSFCAG00000039093)	NDUFB5 (ENSFCAG00000012365)	USP13 (ENSFCAG00000025086)	PEX5L (ENSFCAG00000012367)	TTC14 (ENSFCAG00000027763)
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Afrotheria	ANCESTRAL SPECIES																	ENSGT01030000234598.a.b ##22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT01030000234598.a.b ##22
Hyrax	MODERN SPECIES	5911																NAALADL2 (ENSPCAG00000001404) ##22
Tenrec	MODERN SPECIES	6996																NAALADL2 (ENSETEG00000017803) ##22
Xenarthra	ANCESTRAL SPECIES	1212													ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22
Sloth	MODERN SPECIES	6361																NAALADL2 (ENSCHOG00000005386) ##22
Armadillo	MODERN SPECIES	816			ENSDNOG00000039659	ASAP1 (ENSDNOG00000025715)	ENSDNOG00000045844	ENSDNOG00000033438	ENSDNOG00000048524	ENSDNOG00000033194	ENSDNOG00000043561	ENSDNOG00000035146	ECT2 (ENSDNOG00000014299)	SPATA16 (ENSDNOG00000002976)	ENSDNOG00000044292	ENSDNOG00000042657	NLGN1 (ENSDNOG00000010011)	ENSDNOG00000034175 ##22
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00940000158429.d	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980.j	ENSGT00940000157401	ENSGT00940000155931
Common wonbat	MODERN SPECIES	1046	ENSVURG00010013116	RPL22L1 (ENSVURG00010013107)	EIF5A2 (ENSVURG00010013099)	SLC2A2 (ENSVURG00010013085)	TNIK (ENSVURG00010012914)	PLD1 (ENSVURG00010012863)	ENSVURG00010012856	TMEM212 (ENSVURG00010012848)	FNDC3B (ENSVURG00010012819)	GHSR (ENSVURG00010012811)	TNFSF10 (ENSVURG00010012804)	ENSVURG00010012795	ECT2 (ENSVURG00010012760)	SPATA16 (ENSVURG00010012732)	NLGN1 (ENSVURG00010012715)	NAALADL2 (ENSVURG00010012681) ##22	ENSVURG00010012660	TBL1XR1 (ENSVURG00010012629)	KCNMB2 (ENSVURG00010012605)	PIK3CA (ENSVURG00010012578)	KCNMB3 (ENSVURG00010012570)	ZNF639 (ENSVURG00010012565)	MFN1 (ENSVURG00010012549)	GNB4 (ENSVURG00010012529)	ACTL6A (ENSVURG00010012511)	MRPL47 (ENSVURG00010012499)	NDUFB5 (ENSVURG00010012488)	USP13 (ENSVURG00010012461)	PEX5L (ENSVURG00010012070)	ENSVURG00010012046	ENSVURG00010012039
koala	MODERN SPECIES	9	ENSPCIG00000000151	EIF5A2 (ENSPCIG00000000441)	SLC2A2 (ENSPCIG00000000479)	TNIK (ENSPCIG00000005702)	PLD1 (ENSPCIG00000005485)	ENSPCIG00000033713	TMEM212 (ENSPCIG00000005387)	FNDC3B (ENSPCIG00000010317)	GHSR (ENSPCIG00000010316)	TNFSF10 (ENSPCIG00000010315)	NCEH1 (ENSPCIG00000010313)	ECT2 (ENSPCIG00000010310)	SPATA16 (ENSPCIG00000010299)	ENSPCIG00000035061	NLGN1 (ENSPCIG00000023665)	NAALADL2 (ENSPCIG00000036959) ##22	ENSPCIG00000010041	ENSPCIG00000030517	TBL1XR1 (ENSPCIG00000028583)	KCNMB2 (ENSPCIG00000006759)	ZMAT3 (ENSPCIG00000034195)	ENSPCIG00000006763	PIK3CA (ENSPCIG00000006767)	KCNMB3 (ENSPCIG00000010392)	ZNF639 (ENSPCIG00000010395)	MFN1 (ENSPCIG00000006771)	GNB4 (ENSPCIG00000006774)	ACTL6A (ENSPCIG00000006777)	ENSPCIG00000006780	ENSPCIG00000032372	USP13 (ENSPCIG00000023996)
Wallaby	MODERN SPECIES	8550																ENSMEUG00000001460 ##22
Tasmanian devil	MODERN SPECIES	2	CLDN11 (ENSSHAG00000025165)	SLC7A14 (ENSSHAG00000014326)	RPL22L1 (ENSSHAG00000012876)	EIF5A2 (ENSSHAG00000027904)	SLC2A2 (ENSSHAG00000012226)	TNIK (ENSSHAG00000011118)	PLD1 (ENSSHAG00000007384)	TMEM212 (ENSSHAG00000024508)	FNDC3B (ENSSHAG00000006632)	GHSR (ENSSHAG00000023938)	ENSSHAG00000031725	NCEH1 (ENSSHAG00000025000)	ECT2 (ENSSHAG00000010171)	SPATA16 (ENSSHAG00000010931)	NLGN1 (ENSSHAG00000016978)	NAALADL2 (ENSSHAG00000018074) ##22	ENSSHAG00000022530	TBL1XR1 (ENSSHAG00000005700)	KCNMB2 (ENSSHAG00000027317)	ZMAT3 (ENSSHAG00000016154)	PIK3CA (ENSSHAG00000016406)	KCNMB3 (ENSSHAG00000016520)	ZNF639 (ENSSHAG00000016769)	MFN1 (ENSSHAG00000016834)	GNB4 (ENSSHAG00000016950)	ACTL6A (ENSSHAG00000017237)	MRPL47 (ENSSHAG00000017273)	NDUFB5 (ENSSHAG00000021190)	USP13 (ENSSHAG00000017431)	PEX5L (ENSSHAG00000017604)	TTC14 (ENSSHAG00000018408)
Opossum	MODERN SPECIES	6	BMPR2 (ENSMODG00000016287)	ENSMODG00000040173	NOP58 (ENSMODG00000016294)	SUMO1 (ENSMODG00000045712)	ENSMODG00000025491	FZD7 (ENSMODG00000016310)	CDK15 (ENSMODG00000016326)	ALS2 (ENSMODG00000016329)	FNDC3B (ENSMODG00000021323)	GHSR (ENSMODG00000021322)	TNFSF10 (ENSMODG00000041585)	NCEH1 (ENSMODG00000051563)	ECT2 (ENSMODG00000021319)	SPATA16 (ENSMODG00000021318)	NLGN1 (ENSMODG00000021315)	NAALADL2 (ENSMODG00000021314) ##22	ENSMODG00000024795	ENSMODG00000051427	ENSMODG00000021313	ENSMODG00000027370	TBL1XR1 (ENSMODG00000021312)	KCNMB2 (ENSMODG00000021309)	ZMAT3 (ENSMODG00000021308)	PIK3CA (ENSMODG00000021305)	KCNMB3 (ENSMODG00000021307)	ZNF639 (ENSMODG00000021306)	MFN1 (ENSMODG00000021304)	GNB4 (ENSMODG00000021303)	ACTL6A (ENSMODG00000021302)	ENSMODG00000041416	NDUFB5 (ENSMODG00000021300)
Platypus	MODERN SPECIES		CLDN11 (ENSOANG00000050151)	SLC7A14 (ENSOANG00000008030)	RPL22L1 (ENSOANG00000003938)	EIF5A2 (ENSOANG00000047260)	SLC2A2 (ENSOANG00000001520)	TNIK (ENSOANG00000012684)	PLD1 (ENSOANG00000037105)	TMEM212 (ENSOANG00000050579)	FNDC3B (ENSOANG00000001087)	GHSR (ENSOANG00000045758)	TNFSF10 (ENSOANG00000009315)	NCEH1 (ENSOANG00000039720)	ECT2 (ENSOANG00000013671)	SPATA16 (ENSOANG00000022205)	NLGN1 (ENSOANG00000050589)	NAALADL2 (ENSOANG00000049145) ##22	ENSOANG00000049897	TBL1XR1 (ENSOANG00000009492)	ENSOANG00000001673	KCNMB2 (ENSOANG00000040015)	ZMAT3 (ENSOANG00000009901)	PIK3CA (ENSOANG00000013922)	KCNMB3 (ENSOANG00000013923)	ZNF639 (ENSOANG00000012679)	MFN1 (ENSOANG00000004694)	GNB4 (ENSOANG00000004695)	ACTL6A (ENSOANG00000044256)	MRPL47 (ENSOANG00000002137)	ENSOANG00000021730	USP13 (ENSOANG00000050467)	PEX5L (ENSOANG00000041655)
Anura	ANCESTRAL SPECIES	26	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00940000154509	ENSGT00390000003738.a.b	ENSGT00940000155708	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b ##22	ENSGT00940000153421.a.b	ENSGT00950000183039.B.b.a	ENSGT00730000111202	ENSGT00940000155531.b	ENSGT00950000183039.B.a	ENSGT00940000156335	ENSGT00390000013727.d	ENSGT01000000214413.b.a.a	ENSGT00940000156305	ENSGT00390000002837	ENSGT00390000009980	ENSGT00940000157401	ENSGT00940000155931	ENSGT00390000013701	ENSGT00390000015010
Frog	MODERN SPECIES	5	eif5a (ENSXETG00000034500)	slc2a2 (ENSXETG00000039156)	tnik (ENSXETG00000009142)	tmem212 (ENSXETG00000009134)	pld1 (ENSXETG00000009136)	ENSXETG00000042406	fndc3b (ENSXETG00000023615)	ghsr (ENSXETG00000023610)	ENSXETG00000047368	tnfsf10 (ENSXETG00000030595)	nceh1 (ENSXETG00000038694)	ect2 (ENSXETG00000023596)	ENSXETG00000030915	ENSXETG00000044786	nlgn1 (ENSXETG00000001525)	naaladl2 (ENSXETG00000040453) ##22	tbl1xr1 (ENSXETG00000001521)	kcnmb2 (ENSXETG00000037867)	zmat3 (ENSXETG00000007251)	pik3ca (ENSXETG00000007252)	kcnmb3 (ENSXETG00000007254)	znf639 (ENSXETG00000007256)	mfn1 (ENSXETG00000007258)	gnb4 (ENSXETG00000007259)	actl6a (ENSXETG00000007260)	mrpl47 (ENSXETG00000029930)	ndufb5 (ENSXETG00000007264)	usp13 (ENSXETG00000007265)	pex5l (ENSXETG00000032445)	ttc14 (ENSXETG00000019435)	ccdc39 (ENSXETG00000019437)
Leishan spiny toad	MODERN SPECIES	7	SLC2A2 (ENSLLEG00000021022)	TNIK (ENSLLEG00000021324)	PLD1 (ENSLLEG00000024604)	TMEM212 (ENSLLEG00000024853)	ENSLLEG00000024901	FNDC3B (ENSLLEG00000024951)	GHSR (ENSLLEG00000025112)	TNFSF10 (ENSLLEG00000025153)	ENSLLEG00000025254	ENSLLEG00000025509	ENSLLEG00000025608	ECT2 (ENSLLEG00000025676)	SPATA16 (ENSLLEG00000026330)	ENSLLEG00000026804	NLGN1 (ENSLLEG00000026838)	NAALADL2 (ENSLLEG00000026863) ##22	ENSLLEG00000026984	TBL1XR1 (ENSLLEG00000027031)	ENSLLEG00000027333	KCNMB2 (ENSLLEG00000027366)	ZMAT3 (ENSLLEG00000027411)	ENSLLEG00000027471	PIK3CA (ENSLLEG00000027506)	KCNMB3 (ENSLLEG00000027813)	ENSLLEG00000027846	ENSLLEG00000027869	MFN1 (ENSLLEG00000027892)	GNB4 (ENSLLEG00000027982)	ENSLLEG00000028077	ENSLLEG00000028118	ENSLLEG00000028299
Elephant shark	MODERN SPECIES	1486	kcnab1a (ENSCMIG00000000504)	ENSCMIG00000000520	ENSCMIG00000000536	gmps (ENSCMIG00000000610)	slc33a1 (ENSCMIG00000000865)	C3orf33 (ENSCMIG00000000870)	PLCH1 (ENSCMIG00000000888)	ENSCMIG00000001004	ENSCMIG00000001178	ENSCMIG00000001393	CCDC150 (ENSCMIG00000001447)	nceh1b.1 (ENSCMIG00000001486)	ect2 (ENSCMIG00000001575)	SPATA16 (ENSCMIG00000001766)	nlgn1 (ENSCMIG00000001796)	NAALADL2 (ENSCMIG00000001850) ##22	TBL1XR1 (ENSCMIG00000002022)	kcnmb2 (ENSCMIG00000002407)	ZMAT3 (ENSCMIG00000002413)	PIK3CA (ENSCMIG00000002435)	MFN1 (ENSCMIG00000002484)	gnb4b (ENSCMIG00000002549)	actl6a (ENSCMIG00000002701)	mrpl47 (ENSCMIG00000003057)	ndufb5 (ENSCMIG00000003066)	usp13 (ENSCMIG00000003077)	PEX5L (ENSCMIG00000003135)	ENSCMIG00000003168	pde6d (ENSCMIG00000003180)	phb2 (ENSCMIG00000003203)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01030000234598.a.b ##22
Hagfish	MODERN SPECIES	1015													ENSEBUG00000005009	ENSEBUG00000005185	ENSEBUG00000005882	ENSEBUG00000009107 ##22	ENSEBUG00000001933