Vertebrata	ANCESTRAL SPECIES	212																ENSGT00940000154902 #22	ENSGT00950000183059.b.a	ENSGT00940000155103.a.b
Gnathostomata	ANCESTRAL SPECIES	315													ENSGT00530000063867.a.b	ENSGT00530000063867.a.a	ENSGT00940000163336	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000008848	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00940000160678.b	ENSGT00940000159934
Euteleostomi	ANCESTRAL SPECIES	164	ENSGT00940000159084	ENSGT00390000017627.a	ENSGT00390000000083.a	ENSGT00940000160910	ENSGT00950000183096.a.a.d	ENSGT00940000167863	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000008848	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00940000160678.b	ENSGT00940000159934
Sarcopterygii	ANCESTRAL SPECIES	7	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00940000159887	ENSGT00940000157501	ENSGT00390000012412	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000154045.b	ENSGT00940000160944	ENSGT00950000183136.a.b	ENSGT00530000063867.a.b	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00950000183059.b.a.a	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000155691.d	ENSGT00510000048283.d	ENSGT00940000159075.A	ENSGT00390000001610	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000153463.a	ENSGT00940000159639
Tetrapoda	ANCESTRAL SPECIES	69	ENSGT00940000160341	ENSGT00390000018173	ENSGT00940000155559.a.b	ENSGT00940000161083	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000165200
Amniota	ANCESTRAL SPECIES	112						ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Mammalia	DUPLICATION
Mammalia	DUPLICATION
Mammalia	ANCESTRAL SPECIES	9	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00950000182990.a.a.b.a.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192
Theria	ANCESTRAL SPECIES	8	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00530000063866 #29	ENSGT00390000013802.v.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Primates	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Haplorrhini	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Simiiformes	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Cercopithecidae	ANCESTRAL SPECIES		ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Rhinopithecus	ANCESTRAL SPECIES	15	ENSGT01100000263497.B.e.b #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.y.b ##21	ENSGT00390000007552.f.x.y.a #21	ENSGT00940000154902.bb.b #22	ENSGT01090000263362 #23	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00950000183014.f.b.a.a.t.g.a.b #30	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Golden snub-nosed monkey	MODERN SPECIES	2511	HNRNPUL2 (ENSRROG00000036561) #7	BSCL2 (ENSRROG00000036969) #8	GNG3 (ENSRROG00000037172) #9	UBXN1 (ENSRROG00000040915) #10	UQCC3 (ENSRROG00000007192) #11	CSKMT (ENSRROG00000027675) #12	ENSRROG00000044930 #13	INTS5 (ENSRROG00000042424) #14	GANAB (ENSRROG00000037256) #15	B3GAT3 (ENSRROG00000029771) #16	ROM1 (ENSRROG00000033061) #17	EML3 (ENSRROG00000043037) #18	MTA2 (ENSRROG00000044052) #19	TUT1 (ENSRROG00000043315) #20	ENSRROG00000042836 #21	AHNAK (ENSRROG00000044889) #22	ENSRROG00000045117 #23	ASRGL1 (ENSRROG00000031523) #24	SCGB1D4 (ENSRROG00000039995) #25	ENSRROG00000044482 #26	SCGB1D2 (ENSRROG00000031331) #27	SCGB2A1 (ENSRROG00000044015) #28	SCGB1D1 (ENSRROG00000036655) #29	ENSRROG00000036187 #30	ENSRROG00000023884 #31	INCENP (ENSRROG00000030466) #32	ENSRROG00000030005 #33	BEST1 (ENSRROG00000034577) #34	RAB3IL1 (ENSRROG00000013229) #35	FADS3 (ENSRROG00000037612) #36	ENSRROG00000020489 #37
Black snub-nosed monkey	MODERN SPECIES	600	HNRNPUL2 (ENSRBIG00000037820) #7	BSCL2 (ENSRBIG00000040625) #8	ENSRBIG00000036927 #9	UBXN1 (ENSRBIG00000028404) #10	UQCC3 (ENSRBIG00000038515) #11	CSKMT (ENSRBIG00000037785) #12	ENSRBIG00000030851 #13	INTS5 (ENSRBIG00000045006) #14	GANAB (ENSRBIG00000040636) #15	B3GAT3 (ENSRBIG00000012660) #16	ROM1 (ENSRBIG00000033282) #17	EML3 (ENSRBIG00000029464) #18	MTA2 (ENSRBIG00000038336) #19	TUT1 (ENSRBIG00000021240) #20	ENSRBIG00000042208 ##21	ENSRBIG00000032801 #22	ENSRBIG00000037491 #23	ASRGL1 (ENSRBIG00000008615) #24	ENSRBIG00000027474	ENSRBIG00000026802	SCGB1D4 (ENSRBIG00000044615) #25	ENSRBIG00000039690 #26	SCGB1D2 (ENSRBIG00000032475) #27	SCGB2A1 (ENSRBIG00000041379) #28	SCGB1D1 (ENSRBIG00000034273) #29	ENSRBIG00000038214 #30	INCENP (ENSRBIG00000040656) #32	FTH1 (ENSRBIG00000044604) ##33	BEST1 (ENSRBIG00000027850) #34	RAB3IL1 (ENSRBIG00000013414) #35	FADS3 (ENSRBIG00000035575) #36
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35
Vervet Monkey	MODERN SPECIES		HNRNPUL2 (ENSCSAG00000006701) #7	GNG3 (ENSCSAG00000006696) #9	BSCL2 (ENSCSAG00000006684) #8	LRRN4CL (ENSCSAG00000019176)	UBXN1 (ENSCSAG00000006659) #10	UQCC3 (ENSCSAG00000006653) #11	CSKMT (ENSCSAG00000006647) #12	INTS5 (ENSCSAG00000006644) #14	GANAB (ENSCSAG00000006636) #15	B3GAT3 (ENSCSAG00000006625) #16	ROM1 (ENSCSAG00000006620) #17	EML3 (ENSCSAG00000006615) #18	MTA2 (ENSCSAG00000006593) #19	TUT1 (ENSCSAG00000006566) #20	EEF1G (ENSCSAG00000006560) #21	AHNAK (ENSCSAG00000006556) #22	SCGB1A1 (ENSCSAG00000006546)	ASRGL1 (ENSCSAG00000006542) #24	SCGB1D4 (ENSCSAG00000006534) #25	ENSCSAG00000006528 #26	SCGB1D2 (ENSCSAG00000006525) #27	SCGB2A1 (ENSCSAG00000006522) #28	SCGB1D1 (ENSCSAG00000006515) #29	INCENP (ENSCSAG00000006508) #32	BEST1 (ENSCSAG00000006498) #34	ENSCSAG00000006491 ##33	RAB3IL1 (ENSCSAG00000006483) #35	FADS3 (ENSCSAG00000006479) #36	FADS2 (ENSCSAG00000006475) ##36	FADS1 (ENSCSAG00000006469) ##36	FEN1 (ENSCSAG00000006461)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.b #22
Cercopithecinae_d	ANCESTRAL SPECIES	6	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00910000147498 #37
Sooty mangabey	MODERN SPECIES	518	BSCL2 (ENSCATG00000037983) #8	GNG3 (ENSCATG00000038843) #9	LRRN4CL (ENSCATG00000003551)	UBXN1 (ENSCATG00000036706) #10	UQCC3 (ENSCATG00000015726) #11	LBHD1 (ENSCATG00000037717)	CSKMT (ENSCATG00000035188) #12	INTS5 (ENSCATG00000032127) #14	GANAB (ENSCATG00000037474) #15	B3GAT3 (ENSCATG00000043834) #16	ROM1 (ENSCATG00000043968) #17	EML3 (ENSCATG00000043181) #18	MTA2 (ENSCATG00000037060) #19	TUT1 (ENSCATG00000036770) #20	EEF1G (ENSCATG00000038495) #21	AHNAK (ENSCATG00000038864) #22	SCGB1A1 (ENSCATG00000038223)	ASRGL1 (ENSCATG00000038215) #24	ENSCATG00000036822	SCGB1D4 (ENSCATG00000037621) #25	ENSCATG00000043571 #26	SCGB1D2 (ENSCATG00000037575) #27	SCGB2A1 (ENSCATG00000043661) #28	SCGB1D1 (ENSCATG00000037601) #29	INCENP (ENSCATG00000037082) #32	ENSCATG00000037944	FTH1 (ENSCATG00000043595) ##33	BEST1 (ENSCATG00000037568) #34	RAB3IL1 (ENSCATG00000038420) #35	FADS3 (ENSCATG00000042722) #36	ENSCATG00000002961 #37
Macaca	ANCESTRAL SPECIES	2	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Macaca_a	ANCESTRAL SPECIES	3	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.a.b.b	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.c.b #25	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.a.b.b.a.b.b.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000183316	ENSGT00950000182990.a.a.b.b ##36
Rhesus	MODERN SPECIES	5	HNRNPUL2 (ENSMMUG00000051635) #7	BSCL2 (ENSMMUG00000014363) #8	GNG3 (ENSMMUG00000042036) #9	LRRN4CL (ENSMMUG00000031129)	UBXN1 (ENSMMUG00000005761) #10	ENSMMUG00000059843	CSKMT (ENSMMUG00000046328) #12	INTS5 (ENSMMUG00000013949) #14	GANAB (ENSMMUG00000018117) #15	B3GAT3 (ENSMMUG00000031126) #16	ROM1 (ENSMMUG00000059876) #17	EML3 (ENSMMUG00000018112) #18	MTA2 (ENSMMUG00000018110) #19	TUT1 (ENSMMUG00000006595) #20	EEF1G (ENSMMUG00000006598) #21	AHNAK (ENSMMUG00000022301) #22	SCGB1A1 (ENSMMUG00000031123)	ASRGL1 (ENSMMUG00000013831) #24	SCGB1D4 (ENSMMUG00000058338) #25	SCGB1D2 (ENSMMUG00000004424) #27	SCGB2A1 (ENSMMUG00000054866) #28	SCGB1D1 (ENSMMUG00000062870) #29	INCENP (ENSMMUG00000004420) #32	ENSMMUG00000062874	FTH1 (ENSMMUG00000015146) ##33	BEST1 (ENSMMUG00000015147) #34	RAB3IL1 (ENSMMUG00000015148) #35	FADS3 (ENSMMUG00000000328) #36	FADS2 (ENSMMUG00000000327) ##36	FADS1 (ENSMMUG00000013798) ##36	FEN1 (ENSMMUG00000006657)
Pig-tailed macaque	MODERN SPECIES	433	GNG3 (ENSMNEG00000041074) #9	BSCL2 (ENSMNEG00000027955) #8	LRRN4CL (ENSMNEG00000008801)	UBXN1 (ENSMNEG00000023355) #10	UQCC3 (ENSMNEG00000009079) #11	CSKMT (ENSMNEG00000032750) #12	ENSMNEG00000031419 #13	INTS5 (ENSMNEG00000009187) #14	GANAB (ENSMNEG00000044710) #15	B3GAT3 (ENSMNEG00000018264) #16	ROM1 (ENSMNEG00000040388) #17	EML3 (ENSMNEG00000035836) #18	MTA2 (ENSMNEG00000041381) #19	TUT1 (ENSMNEG00000029841) #20	ENSMNEG00000044626 #21	ENSMNEG00000039903 #22	ENSMNEG00000043224 ##22	SCGB1A1 (ENSMNEG00000030793)	ASRGL1 (ENSMNEG00000044187) #24	ENSMNEG00000017421	SCGB1D4 (ENSMNEG00000029024) #25	ENSMNEG00000039066 #26	SCGB1D2 (ENSMNEG00000038358) #27	SCGB2A1 (ENSMNEG00000036574) #28	SCGB1D1 (ENSMNEG00000031707) #29	INCENP (ENSMNEG00000034022) #32	ENSMNEG00000034175	ENSMNEG00000035801 ##33	BEST1 (ENSMNEG00000032288) #34	RAB3IL1 (ENSMNEG00000041630) #35	FADS3 (ENSMNEG00000045543) #36
Hominoidea	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954.k.a #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.c	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36
Hominidae	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954.k.a #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.c	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139.e #15	ENSGT00940000156954.k.a #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.h.a #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.c	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT01030000235462	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316
Gorilla	MODERN SPECIES	2	TTC9C (ENSGGOG00000011733)	HNRNPUL2 (ENSGGOG00000011722) #7	GNG3 (ENSGGOG00000003199) #9	BSCL2 (ENSGGOG00000003195) #8	UBXN1 (ENSGGOG00000005047) #10	ENSGGOG00000027467 #11	CSKMT (ENSGGOG00000027342) #12	LBHD1 (ENSGGOG00000005043)	INTS5 (ENSGGOG00000026126) #14	GANAB (ENSGGOG00000013611) #15	EML3 (ENSGGOG00000013581) #18	ROM1 (ENSGGOG00000013599) #17	MTA2 (ENSGGOG00000013570) #19	TUT1 (ENSGGOG00000013564) #20	ENSGGOG00000013557 #21	ENSGGOG00000026177 #22	SCGB1A1 (ENSGGOG00000001795)	ENSGGOG00000023746	SCGB1D4 (ENSGGOG00000000819) #25	SCGB2A2 (ENSGGOG00000006347) ##28	SCGB1D2 (ENSGGOG00000026258) #27	SCGB2A1 (ENSGGOG00000022202) #28	SCGB1D1 (ENSGGOG00000015681) #29	ENSGGOG00000041256	INCENP (ENSGGOG00000014193) #32	ENSGGOG00000027722 ##33	BEST1 (ENSGGOG00000011404) #34	ENSGGOG00000012399 #35	FADS3 (ENSGGOG00000012388) #36	ENSGGOG00000037580	ENSGGOG00000043363
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139.e #15	ENSGT00940000156954.k.a #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.h.a #21	ENSGT00390000007552.f.x.i #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.c	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36
Pan	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139.e #15	ENSGT00940000156954.k.a #16	ENSGT00940000159139.f #15	ENSGT00940000156954.l #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.h.a #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.c	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36
Chimpanzee	MODERN SPECIES	2	HNRNPUL2 (ENSPTRG00000034359) #7	GNG3 (ENSPTRG00000003783) #9	BSCL2 (ENSPTRG00000003784) #8	UBXN1 (ENSPTRG00000003780) #10	UQCC3 (ENSPTRG00000028607) #11	CSKMT (ENSPTRG00000034411) #12	LBHD1 (ENSPTRG00000049492)	INTS5 (ENSPTRG00000003777) #14	GANAB (ENSPTRG00000003776) #15	B3GAT3 (ENSPTRG00000039665) #16	ROM1 (ENSPTRG00000003773) #17	ENSPTRG00000003772 #18	MTA2 (ENSPTRG00000003771) #19	TUT1 (ENSPTRG00000003770) #20	EEF1G (ENSPTRG00000003768) #21	AHNAK (ENSPTRG00000003766) #22	SCGB1A1 (ENSPTRG00000003765)	ASRGL1 (ENSPTRG00000003764) #24	ENSPTRG00000047416	SCGB1D4 (ENSPTRG00000050005) #25	SCGB2A2 (ENSPTRG00000003763) ##28	SCGB1D2 (ENSPTRG00000023215) #27	SCGB2A1 (ENSPTRG00000003762) #28	SCGB1D1 (ENSPTRG00000003761) #29	ENSPTRG00000046039	INCENP (ENSPTRG00000003760) #32	ENSPTRG00000050975 ##33	BEST1 (ENSPTRG00000003756) #34	RAB3IL1 (ENSPTRG00000003755) #35	FADS3 (ENSPTRG00000003754) #36	ENSPTRG00000052244
Bonobo	MODERN SPECIES	2	TTC9C (ENSPPAG00000030010)	ENSPPAG00000041471	GNG3 (ENSPPAG00000032105) #9	BSCL2 (ENSPPAG00000042902) #8	UBXN1 (ENSPPAG00000036691) #10	ENSPPAG00000012147 #11	CSKMT (ENSPPAG00000029192) #12	LBHD1 (ENSPPAG00000031864)	INTS5 (ENSPPAG00000028305) #14	GANAB (ENSPPAG00000043210) #15	B3GAT3 (ENSPPAG00000016802) #16	ROM1 (ENSPPAG00000035434) #17	EML3 (ENSPPAG00000031717) #18	TUT1 (ENSPPAG00000037200) #20	ENSPPAG00000043560 #21	ENSPPAG00000044021 #22	SCGB1A1 (ENSPPAG00000037115)	ASRGL1 (ENSPPAG00000037527) #24	ENSPPAG00000043065	SCGB1D4 (ENSPPAG00000020935) #25	SCGB2A2 (ENSPPAG00000039013) ##28	SCGB1D2 (ENSPPAG00000011860) #27	SCGB2A1 (ENSPPAG00000040636) #28	SCGB1D1 (ENSPPAG00000038178) #29	INCENP (ENSPPAG00000020765) #32	ENSPPAG00000029826 ##33	BEST1 (ENSPPAG00000028859) #34	RAB3IL1 (ENSPPAG00000042430) #35	FADS3 (ENSPPAG00000027798) #36	ENSPPAG00000041561	FADS2 (ENSPPAG00000038024) ##36
Human	MODERN SPECIES	2	LRRN4CL (ENSG00000177363)	UBXN1 (ENSG00000162191) #10	UQCC3 (ENSG00000204922) #11	CSKMT (ENSG00000214756) #12	LBHD1 (ENSG00000162194)	C11orf98 (ENSG00000278615) #13	ENSG00000255432	INTS5 (ENSG00000185085) #14	GANAB (ENSG00000089597) #15	B3GAT3 (ENSG00000149541) #16	ROM1 (ENSG00000149489) #17	EML3 (ENSG00000149499) #18	MTA2 (ENSG00000149480) #19	TUT1 (ENSG00000149016) #20	EEF1G (ENSG00000254772) #21	AHNAK (ENSG00000124942) #22	SCGB1A1 (ENSG00000149021)	ASRGL1 (ENSG00000162174) #24	SCGB1D4 (ENSG00000197745) #25	SCGB2A2 (ENSG00000110484) ##28	SCGB1D2 (ENSG00000124935) #27	SCGB2A1 (ENSG00000124939) #28	SCGB1D1 (ENSG00000168515) #29	INCENP (ENSG00000149503) #32	FTH1 (ENSG00000167996) ##33	BEST1 (ENSG00000167995) #34	RAB3IL1 (ENSG00000167994) #35	FADS3 (ENSG00000221968) #36	FADS1 (ENSG00000149485) ##36	FADS2 (ENSG00000134824) ##36	FEN1 (ENSG00000168496)
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a.i #24	ENSGT00950000183045.A.a.a.j #24	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Cebidae	ANCESTRAL SPECIES		ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.c.b #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a.i #24	ENSGT00950000183045.A.a.a.j #24	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.c.b #21	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a.i #24	ENSGT00390000007552.f.x.c.a #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316
Capuchin	MODERN SPECIES	316	HNRNPUL2 (ENSCCAG00000037674) #7	BSCL2 (ENSCCAG00000026340) #8	GNG3 (ENSCCAG00000030017) #9	UBXN1 (ENSCCAG00000020847) #10	UQCC3 (ENSCCAG00000030092) #11	LBHD1 (ENSCCAG00000025856)	ENSCCAG00000037825 #12	INTS5 (ENSCCAG00000030851) #14	GANAB (ENSCCAG00000001747) #15	ENSCCAG00000037727 #16	ROM1 (ENSCCAG00000023216) #17	EML3 (ENSCCAG00000029421) #18	MTA2 (ENSCCAG00000026631) #19	TUT1 (ENSCCAG00000018819) #20	ENSCCAG00000033526 #21	AHNAK (ENSCCAG00000025745) #22	ASRGL1 (ENSCCAG00000024611) #24	ENSCCAG00000022311 #26	SCGB1D2 (ENSCCAG00000033799) #27	SCGB2A1 (ENSCCAG00000030614) #28	SCGB1D1 (ENSCCAG00000032346) #29	INCENP (ENSCCAG00000018638) #32	ENSCCAG00000027979 ##33	BEST1 (ENSCCAG00000022350) #34	RAB3IL1 (ENSCCAG00000023993) #35	FADS3 (ENSCCAG00000036626) #36	FADS2 (ENSCCAG00000020221) ##36	ENSCCAG00000036895	FADS1 (ENSCCAG00000034736) ##36	FEN1 (ENSCCAG00000024050)	TMEM258 (ENSCCAG00000022859)
Mas night monkey	MODERN SPECIES	336	HNRNPUL2 (ENSANAG00000027153) #7	GNG3 (ENSANAG00000028934) #9	ENSANAG00000037042 #8	UBXN1 (ENSANAG00000027543) #10	UQCC3 (ENSANAG00000035176) #11	CSKMT (ENSANAG00000028032) #12	LBHD1 (ENSANAG00000036011)	INTS5 (ENSANAG00000028879) #14	GANAB (ENSANAG00000007532) #15	B3GAT3 (ENSANAG00000035998) #16	ROM1 (ENSANAG00000035173) #17	EML3 (ENSANAG00000024070) #18	MTA2 (ENSANAG00000021803) #19	TUT1 (ENSANAG00000029063) #20	ENSANAG00000024873 #21	ENSANAG00000034540 #22	SCGB1A1 (ENSANAG00000027981)	ENSANAG00000036672 #24	ENSANAG00000033173 #24	SCGB1D4 (ENSANAG00000035813) #25	ENSANAG00000032810	SCGB2A2 (ENSANAG00000030356) ##28	SCGB1D2 (ENSANAG00000023403) #27	SCGB2A1 (ENSANAG00000023243) #28	SCGB1D1 (ENSANAG00000037619) #29	INCENP (ENSANAG00000035094) #32	ENSANAG00000032960 ##33	BEST1 (ENSANAG00000037419) #34	RAB3IL1 (ENSANAG00000035875) #35	FADS3 (ENSANAG00000022958) #36	ENSANAG00000038346
Tarsier	MODERN SPECIES	5284															ENSTSYG00000031722 ##22	AHNAK (ENSTSYG00000032384) #22	SCGB1A1 (ENSTSYG00000013070)	ASRGL1 (ENSTSYG00000026138) #24
Strepsirrhini	ANCESTRAL SPECIES	20	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Bushbaby	MODERN SPECIES	255	BSCL2 (ENSOGAG00000025056) #8	LRRN4CL (ENSOGAG00000031003)	UBXN1 (ENSOGAG00000011411) #10	UQCC3 (ENSOGAG00000028729) #11	LBHD1 (ENSOGAG00000025205)	CSKMT (ENSOGAG00000024258) #12	C11orf98 (ENSOGAG00000033103) #13	INTS5 (ENSOGAG00000032704) #14	GANAB (ENSOGAG00000011407) #15	B3GAT3 (ENSOGAG00000011405) #16	ROM1 (ENSOGAG00000032235) #17	EML3 (ENSOGAG00000000836) #18	MTA2 (ENSOGAG00000000833) #19	TUT1 (ENSOGAG00000000828) #20	EEF1G (ENSOGAG00000000827) #21	ENSOGAG00000031813 #22	ASRGL1 (ENSOGAG00000000405) #24	SCGB2A1 (ENSOGAG00000013831) #28	ENSOGAG00000030358	INCENP (ENSOGAG00000012974) #32	ENSOGAG00000025354 ##33	BEST1 (ENSOGAG00000026226) #34	RAB3IL1 (ENSOGAG00000004501) #35	FADS3 (ENSOGAG00000028613) #36	FADS2 (ENSOGAG00000004500) ##36	FADS1 (ENSOGAG00000010794) ##36	FEN1 (ENSOGAG00000024238)	TMEM258 (ENSOGAG00000010793)	MYRF (ENSOGAG00000010786)	DAGLA (ENSOGAG00000012574)	SYT7 (ENSOGAG00000033441)
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Mouse lemur	MODERN SPECIES	27	HNRNPUL2 (ENSMICG00000009943) #7	GNG3 (ENSMICG00000028299) #9	ENSMICG00000033250 #8	UBXN1 (ENSMICG00000009925) #10	UQCC3 (ENSMICG00000026609) #11	CSKMT (ENSMICG00000038782) #12	LBHD1 (ENSMICG00000042954)	INTS5 (ENSMICG00000009907) #14	GANAB (ENSMICG00000009890) #15	B3GAT3 (ENSMICG00000009885) #16	ROM1 (ENSMICG00000041920) #17	EML3 (ENSMICG00000009866) #18	MTA2 (ENSMICG00000044141) #19	TUT1 (ENSMICG00000009841) #20	EEF1G (ENSMICG00000009834) #21	ENSMICG00000031530 #22	SCGB1A1 (ENSMICG00000041999)	ASRGL1 (ENSMICG00000047676) #24	SCGB2A1 (ENSMICG00000003206) #28	ENSMICG00000047195 #29	INCENP (ENSMICG00000005864) #32	ENSMICG00000044535	ENSMICG00000031901	ENSMICG00000035165 ##33	BEST1 (ENSMICG00000005843) #34	RAB3IL1 (ENSMICG00000005824) #35	FADS3 (ENSMICG00000032887) #36	FADS2 (ENSMICG00000004145) ##36	FADS1 (ENSMICG00000013915) ##36	ENSMICG00000029413	TMEM258 (ENSMICG00000013894)
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Coquerels sifaka	MODERN SPECIES	124	HNRNPUL2 (ENSPCOG00000013502) #7	GNG3 (ENSPCOG00000017973) #9	BSCL2 (ENSPCOG00000015043) #8	UBXN1 (ENSPCOG00000019984) #10	UQCC3 (ENSPCOG00000019522) #11	CSKMT (ENSPCOG00000016342) #12	ENSPCOG00000014134 #13	INTS5 (ENSPCOG00000023497) #14	GANAB (ENSPCOG00000014717) #15	B3GAT3 (ENSPCOG00000008969) #16	ROM1 (ENSPCOG00000027824) #17	EML3 (ENSPCOG00000015725) #18	MTA2 (ENSPCOG00000022200) #19	TUT1 (ENSPCOG00000017464) #20	EEF1G (ENSPCOG00000015966) #21	ENSPCOG00000028630 #22	ENSPCOG00000028633 ##22	SCGB1A1 (ENSPCOG00000028635)	ASRGL1 (ENSPCOG00000028628) #24	SCGB2A1 (ENSPCOG00000028625) #28
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
Glires	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Lagomorpha	ANCESTRAL SPECIES	491															ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	450	HNRNPUL2 (ENSOCUG00000009474) #7	GNG3 (ENSOCUG00000009468) #9	BSCL2 (ENSOCUG00000026008) #8	UBXN1 (ENSOCUG00000017278) #10	UQCC3 (ENSOCUG00000017252) #11	LBHD1 (ENSOCUG00000017260)	CSKMT (ENSOCUG00000024025) #12	INTS5 (ENSOCUG00000017276) #14	ENSOCUG00000017259 #15	B3GAT3 (ENSOCUG00000017246) #16	ROM1 (ENSOCUG00000022258) #17	EML3 (ENSOCUG00000017228) #18	MTA2 (ENSOCUG00000008849) #19	TUT1 (ENSOCUG00000017215) #20	ENSOCUG00000033730 ##22	ENSOCUG00000025901 #22	ENSOCUG00000035541 #22	ASRGL1 (ENSOCUG00000005922) #24	ENSOCUG00000003577 #29	ENSOCUG00000023556 ##28	ENSOCUG00000026803 ##28	ENSOCUG00000030850 #29	ENSOCUG00000023781	ENSOCUG00000022609 #29	ENSOCUG00000032972	ENSOCUG00000000457 #29	ENSOCUG00000005200 ##28	ENSOCUG00000015682 #29	INCENP (ENSOCUG00000011258) #32	ENSOCUG00000014108 ##33	ENSOCUG00000037189
Rabbit	MODERN SPECIES	450	GNG3 (ENSOCUG00000009468) #9	BSCL2 (ENSOCUG00000026008) #8	UBXN1 (ENSOCUG00000017278) #10	UQCC3 (ENSOCUG00000017252) #11	LBHD1 (ENSOCUG00000017260)	CSKMT (ENSOCUG00000024025) #12	INTS5 (ENSOCUG00000017276) #14	ENSOCUG00000017259 #15	B3GAT3 (ENSOCUG00000017246) #16	ROM1 (ENSOCUG00000022258) #17	EML3 (ENSOCUG00000017228) #18	MTA2 (ENSOCUG00000008849) #19	TUT1 (ENSOCUG00000017215) #20	ENSOCUG00000033730 ##22	ENSOCUG00000025901 #22	ENSOCUG00000035541 #22	ASRGL1 (ENSOCUG00000005922) #24	ENSOCUG00000003577 #29	ENSOCUG00000023556 ##28	ENSOCUG00000026803 ##28	ENSOCUG00000030850 #29	ENSOCUG00000023781	ENSOCUG00000022609 #29	ENSOCUG00000032972	ENSOCUG00000000457 #29	ENSOCUG00000005200 ##28	ENSOCUG00000015682 #29	INCENP (ENSOCUG00000011258) #32	ENSOCUG00000014108 ##33	ENSOCUG00000037189	BEST1 (ENSOCUG00000014092) #34
Rodentia	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.p ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Lesser Egyptian jerboa	MODERN SPECIES	60	Hnrnpul2 (ENSJJAG00000011206) #7	Gng3 (ENSJJAG00000015400) #9	ENSJJAG00000019301 #8	Ubxn1 (ENSJJAG00000012631) #10	Uqcc3 (ENSJJAG00000022865) #11	ENSJJAG00000011273	1810009A15Rik (ENSJJAG00000010598) #13	Ints5 (ENSJJAG00000013000) #14	Ganab (ENSJJAG00000024016) #15	B3gat3 (ENSJJAG00000023873) #16	Rom1 (ENSJJAG00000016209) #17	Eml3 (ENSJJAG00000001007) #18	Mta2 (ENSJJAG00000001163) #19	Tut1 (ENSJJAG00000022329) #20	Eef1g (ENSJJAG00000019511) #21	ENSJJAG00000015059 #22	Scgb1a1 (ENSJJAG00000013224)	Asrgl1 (ENSJJAG00000021275) #24
Muroidea	ANCESTRAL SPECIES	2	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Upper Galilee mountains blind mole rat	MODERN SPECIES	993	Gng3 (ENSNGAG00000017324) #9	Bscl2 (ENSNGAG00000001576) #8	Lrrn4cl (ENSNGAG00000019480)	Ubxn1 (ENSNGAG00000019771) #10	Uqcc3 (ENSNGAG00000012681) #11	ENSNGAG00000013023 #12	1810009A15Rik (ENSNGAG00000016918) #13	Ints5 (ENSNGAG00000020876) #14	Ganab (ENSNGAG00000001471) #15	B3gat3 (ENSNGAG00000011046) #16	Rom1 (ENSNGAG00000011407) #17	Eml3 (ENSNGAG00000020054) #18	Mta2 (ENSNGAG00000001070) #19	Tut1 (ENSNGAG00000002988) #20	ENSNGAG00000019856 #21	Ahnak (ENSNGAG00000010664) #22	Scgb1a1 (ENSNGAG00000015223)	Asrgl1 (ENSNGAG00000017941) #24
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00520000061410	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Northern American deer mouse	MODERN SPECIES		Gng3 (ENSPEMG00000028724) #9	Bscl2 (ENSPEMG00000031381) #8	Lrrn4cl (ENSPEMG00000016106)	Ubxn1 (ENSPEMG00000015778) #10	Uqcc3 (ENSPEMG00000030804) #11	1810009A15Rik (ENSPEMG00000031275) #13	Ints5 (ENSPEMG00000004838) #14	Ganab (ENSPEMG00000003185) #15	B3gat3 (ENSPEMG00000009881) #16	Rom1 (ENSPEMG00000003110) #17	Eml3 (ENSPEMG00000008367) #18	Mta2 (ENSPEMG00000007490) #19	Tut1 (ENSPEMG00000018332) #20	Eef1g (ENSPEMG00000004247) #21	ENSPEMG00000019243 ##22	ENSPEMG00000026154 #22	ENSPEMG00000024701	Scgb1a1 (ENSPEMG00000009557)	Asrgl1 (ENSPEMG00000018019) #24	ENSPEMG00000028067	Incenp (ENSPEMG00000008252) #32	ENSPEMG00000020638	Fth1 (ENSPEMG00000017564) ##33	ENSPEMG00000012703 #34	Rab3il1 (ENSPEMG00000011822) #35	Fads3 (ENSPEMG00000012107) #36	Fads2 (ENSPEMG00000015890) ##36	Fads1 (ENSPEMG00000008265) ##36	Fen1 (ENSPEMG00000009788)	ENSPEMG00000011273	Myrf (ENSPEMG00000009821)
Cricetinae	ANCESTRAL SPECIES	2	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Chinese hamster chok1gshd	MODERN SPECIES	401	Bscl2 (ENSCGRG00001015829) #8	Lrrn4cl (ENSCGRG00001009869)	Ubxn1 (ENSCGRG00001006327) #10	Uqcc3 (ENSCGRG00001016702) #11	ENSCGRG00001017126	1810009A15Rik (ENSCGRG00001020427) #13	Ints5 (ENSCGRG00001020963) #14	Ganab (ENSCGRG00001021832) #15	B3GAT3 (ENSCGRG00001023184) #16	Rom1 (ENSCGRG00001013656) #17	Eml3 (ENSCGRG00001015050) #18	Mta2 (ENSCGRG00001005728) #19	Tut1 (ENSCGRG00001017583) #20	ENSCGRG00001010100	ENSCGRG00001013631 #21	Ahnak (ENSCGRG00001009772) #22	Scgb1a1 (ENSCGRG00001017835)	Asrgl1 (ENSCGRG00001019390) #24	Scgb2a2 (ENSCGRG00001015765) ##28	Incenp (ENSCGRG00001019028) #32	FTH1 (ENSCGRG00001020220) ##33	ENSCGRG00001014139 #34	Rab3il1 (ENSCGRG00001015063) #35	Fads3 (ENSCGRG00001017095) #36	Fads2 (ENSCGRG00001013858) ##36	Fads1 (ENSCGRG00001018831) ##36	Fen1 (ENSCGRG00001009889)	ENSCGRG00001013240	Myrf (ENSCGRG00001021116)	Dagla (ENSCGRG00001004102)	Syt7 (ENSCGRG00001022753)
Murinae	ANCESTRAL SPECIES		ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a.a.a #29	ENSGT00530000063866.f.a.b #29	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f
Rat	MODERN SPECIES		Ttc9c (ENSRNOG00000019464)	Hnrnpul2 (ENSRNOG00000019507)	Gng3 (ENSRNOG00000019570) #9	Bscl2 (ENSRNOG00000052393) #8	Ubxn1 (ENSRNOG00000019666) #10	Uqcc3 (ENSRNOG00000045561) #11	Gm49403 (ENSRNOG00000064559)	C1h11orf98 (ENSRNOG00000019701) #13	Ints5 (ENSRNOG00000026005) #14	Ganab (ENSRNOG00000019724) #15	B3gat3 (ENSRNOG00000019873) #18	Rom1 (ENSRNOG00000019858) #17	Mta2 (ENSRNOG00000019913) #19	Tut1 (ENSRNOG00000020047) #20	Eef1g (ENSRNOG00000020075) #21	Ahnak (ENSRNOG00000057569) #22	Scgb1a1 (ENSRNOG00000020196)	Asrgl1 (ENSRNOG00000020202) #24	Scgb1d2 (ENSRNOG00000020294) #29	Scgb1d4 (ENSRNOG00000020301) #29	Scgb2a1 (ENSRNOG00000020305) ##28	AABR07006242.1 (ENSRNOG00000028909) #29	Scgb2a1 (ENSRNOG00000023151) ##28	ENSRNOG00000062718	Incenp (ENSRNOG00000032929) #32	Fth1 (ENSRNOG00000022619) ##33	Best1 (ENSRNOG00000020346) #34	AABR07006255.1 (ENSRNOG00000036633)	Rab3il1 (ENSRNOG00000020349) #35	Fads3 (ENSRNOG00000020385) #36	Fads2 (ENSRNOG00000020440) ##36
Mus	ANCESTRAL SPECIES		ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Shrew mouse	MODERN SPECIES		Ttc9c (MGP_PahariEiJ_G0014150)	Hnrnpul2 (MGP_PahariEiJ_G0014151) #7	Gng3 (MGP_PahariEiJ_G0014152) #9	Bscl2 (MGP_PahariEiJ_G0014153) #8	Lrrn4cl (MGP_PahariEiJ_G0014154)	Ubxn1 (MGP_PahariEiJ_G0014155) #10	Uqcc3 (MGP_PahariEiJ_G0014156) #11	Ints5 (MGP_PahariEiJ_G0014158) #14	Ganab (MGP_PahariEiJ_G0014159) #15	B3gat3 (MGP_PahariEiJ_G0014160) #16	Rom1 (MGP_PahariEiJ_G0014161) #17	Eml3 (MGP_PahariEiJ_G0014162) #18	Mta2 (MGP_PahariEiJ_G0014163) #19	Tut1 (MGP_PahariEiJ_G0014164) #20	Eef1g (MGP_PahariEiJ_G0014165) #21	MGP_PahariEiJ_G0014166 #22	Scgb1a1 (MGP_PahariEiJ_G0014167)	Asrgl1 (MGP_PahariEiJ_G0014168) #24	Incenp (MGP_PahariEiJ_G0014169) #32	Fth1 (MGP_PahariEiJ_G0014170) ##33	Best1 (MGP_PahariEiJ_G0014171) #34	Rab3il1 (MGP_PahariEiJ_G0014172) #35	Fads3 (MGP_PahariEiJ_G0014173) #36	Fads2 (MGP_PahariEiJ_G0014174) ##36	Fads1 (MGP_PahariEiJ_G0014175) ##36	Fen1 (MGP_PahariEiJ_G0014176)	Tmem258 (MGP_PahariEiJ_G0014177)	Myrf (MGP_PahariEiJ_G0014178)	MGP_PahariEiJ_G0014179	Syt7 (MGP_PahariEiJ_G0014180)	Lrrc10b (MGP_PahariEiJ_G0014181)
Mus_A	ANCESTRAL SPECIES	16	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Mus_B	ANCESTRAL SPECIES	16	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Mus_C	ANCESTRAL SPECIES	25	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
spretus	MODERN SPECIES	10	Gng3 (MGP_SPRETEiJ_G0023570) #9	Bscl2 (MGP_SPRETEiJ_G0023571) #8	Lrrn4cl (MGP_SPRETEiJ_G0023572)	Ubxn1 (MGP_SPRETEiJ_G0023573) #10	Uqcc3 (MGP_SPRETEiJ_G0023574) #11	MGP_SPRETEiJ_G0023575	1810009A15Rik (MGP_SPRETEiJ_G0023576) #13	Ints5 (MGP_SPRETEiJ_G0023577) #14	Ganab (MGP_SPRETEiJ_G0023578) #15	B3gat3 (MGP_SPRETEiJ_G0023579) #16	Rom1 (MGP_SPRETEiJ_G0023580) #17	Eml3 (MGP_SPRETEiJ_G0023581) #18	Mta2 (MGP_SPRETEiJ_G0023582) #19	Tut1 (MGP_SPRETEiJ_G0023583) #20	Eef1g (MGP_SPRETEiJ_G0023584) #21	Ahnak (MGP_SPRETEiJ_G0023585) #22	Scgb1a1 (MGP_SPRETEiJ_G0023586)	Asrgl1 (MGP_SPRETEiJ_G0023587) #24	Scgb2a2 (MGP_SPRETEiJ_G0023588) ##28	Incenp (MGP_SPRETEiJ_G0023589) #32	Fth1 (MGP_SPRETEiJ_G0023590) ##33	Best1 (MGP_SPRETEiJ_G0023591) #34	Rab3il1 (MGP_SPRETEiJ_G0023592) #35	Fads3 (MGP_SPRETEiJ_G0023593) #36	Fads2 (MGP_SPRETEiJ_G0023594) ##36	Fads1 (MGP_SPRETEiJ_G0023595) ##36	Fen1 (MGP_SPRETEiJ_G0023596)	Tmem258 (MGP_SPRETEiJ_G0023597)	Myrf (MGP_SPRETEiJ_G0023598)	Dagla (MGP_SPRETEiJ_G0023599)	Syt7 (MGP_SPRETEiJ_G0023600)
Steppe mouse	MODERN SPECIES	2399					Uqcc3 (ENSMSIG00000030087) #11	ENSMSIG00000030086	1810009A15Rik (ENSMSIG00000030082) #13	Ints5 (ENSMSIG00000030081) #14	Ganab (ENSMSIG00000030073) #15	B3gat3 (ENSMSIG00000030069) #16	Rom1 (ENSMSIG00000030067) #17	Eml3 (ENSMSIG00000030059) #18	Mta2 (ENSMSIG00000030052) #19	Tut1 (ENSMSIG00000030047) #20	ENSMSIG00000030044 #21	ENSMSIG00000030038 #22	ENSMSIG00000030024 ##22	Scgb1a1 (ENSMSIG00000030022)	Asrgl1 (ENSMSIG00000030021) #24
Mouse	MODERN SPECIES	10	Bscl2 (ENSMUSG00000071657) #8	Lrrn4cl (ENSMUSG00000071656)	Ubxn1 (ENSMUSG00000071655) #10	Uqcc3 (ENSMUSG00000071654) #11	Lbhd1 (ENSMUSG00000096740)	1810009A15Rik (ENSMUSG00000071653) #13	Gm49416 (ENSMUSG00000116347)	Ints5 (ENSMUSG00000071652) #14	Ganab (ENSMUSG00000071650) #15	B3gat3 (ENSMUSG00000071649) #16	Rom1 (ENSMUSG00000071648) #17	Eml3 (ENSMUSG00000071647) #18	Mta2 (ENSMUSG00000071646) #19	Tut1 (ENSMUSG00000071645) #20	Eef1g (ENSMUSG00000071644) #21	Ahnak (ENSMUSG00000069833) #22	Scgb1a1 (ENSMUSG00000024653)	Asrgl1 (ENSMUSG00000024654) #24	Scgb2a2 (ENSMUSG00000096872) ##28	Incenp (ENSMUSG00000024660) #32	Fth1 (ENSMUSG00000024661) ##33	Best1 (ENSMUSG00000037418) #34	Rab3il1 (ENSMUSG00000024663) #35	Fads3 (ENSMUSG00000024664) #36	Fads2 (ENSMUSG00000024665) ##36	Fads1 (ENSMUSG00000010663) ##36	Fen1 (ENSMUSG00000024742)	Tmem258 (ENSMUSG00000036372)	Myrf (ENSMUSG00000036098)	Dagla (ENSMUSG00000035735)	Syt7 (ENSMUSG00000024743)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.p ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Hystricomorpha	ANCESTRAL SPECIES	37	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.e #29	ENSGT00940000161089	ENSGT00950000183151.a.a.a	ENSGT00390000015415	ENSGT00950000183197.b.a	ENSGT00390000018587	ENSGT00940000153899.a.a	ENSGT00730000110905.a	ENSGT00390000001149	ENSGT00390000003127	ENSGT00940000155040.a	ENSGT00940000157180	ENSGT00940000161192	ENSGT00530000063626.a
Naked mole-rat female	MODERN SPECIES	14	GNG3 (ENSHGLG00000038630) #9	BSCL2 (ENSHGLG00000002887) #8	ENSHGLG00000038756	UBXN1 (ENSHGLG00000002960) #10	METTL12 (ENSHGLG00000044833) #12	ENSHGLG00000002601 #13	INTS5 (ENSHGLG00000039217) #14	ENSHGLG00000045807 #15	ENSHGLG00000045092 #15	B3GAT3 (ENSHGLG00000004546) #16	ROM1 (ENSHGLG00000003990) #17	MTA2 (ENSHGLG00000002877) #19	ENSHGLG00000037053 #20	EEF1G (ENSHGLG00000046941) #21	ENSHGLG00000034389 ##22	ENSHGLG00000037481 #22	ENSHGLG00000035437	ENSHGLG00000038948 #24	ENSHGLG00000029155	ENSHGLG00000046269 #29	ENSHGLG00000033722	ENSHGLG00000002837	ENSHGLG00000046341	TKFC (ENSHGLG00000018883)	CYB561A3 (ENSHGLG00000013997)	ENSHGLG00000034372	ENSHGLG00000038968	ENSHGLG00000019090	ENSHGLG00000032097	LRRC10B (ENSHGLG00000020706)	SYT7 (ENSHGLG00000004485)
Sciuridae	ANCESTRAL SPECIES	40	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Eurasian red squirrel	MODERN SPECIES	2	GNG3 (ENSSVLG00005005306) #9	LRRN4CL (ENSSVLG00005005319)	UBXN1 (ENSSVLG00005005341) #10	UQCC3 (ENSSVLG00005005402) #11	CSKMT (ENSSVLG00005005417) #12	ENSSVLG00005005456 #13	ENSSVLG00005005515	INTS5 (ENSSVLG00005005530) #14	GANAB (ENSSVLG00005005602) #15	B3GAT3 (ENSSVLG00005005875) #16	ROM1 (ENSSVLG00005005903) #17	EML3 (ENSSVLG00005005947) #18	MTA2 (ENSSVLG00005006257) #19	TUT1 (ENSSVLG00005006406) #20	EEF1G (ENSSVLG00005006436) #21	AHNAK (ENSSVLG00005006485) #22	SCGB1A1 (ENSSVLG00005006566)	ASRGL1 (ENSSVLG00005006616) #24	ENSSVLG00005006645	ENSSVLG00005006675	ENSSVLG00005006740 ##33	BEST1 (ENSSVLG00005006784) #34	RAB3IL1 (ENSSVLG00005006928) #35	FADS3 (ENSSVLG00005007116) #36	FADS2 (ENSSVLG00005007178) ##36	FADS1 (ENSSVLG00005007252) ##36	ENSSVLG00005007308	FEN1 (ENSSVLG00005007324)	TMEM258 (ENSSVLG00005007336)	MYRF (ENSSVLG00005007408)	DAGLA (ENSSVLG00005007644)
Marmotini	ANCESTRAL SPECIES	6	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b.a #28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
Alpin marmot	MODERN SPECIES	3	HNRNPUL2 (ENSMMMG00000002784) #7	GNG3 (ENSMMMG00000002755) #9	BSCL2 (ENSMMMG00000002687) #8	LRRN4CL (ENSMMMG00000002684)	UBXN1 (ENSMMMG00000002665) #10	UQCC3 (ENSMMMG00000002655) #11	CSKMT (ENSMMMG00000002643) #12	INTS5 (ENSMMMG00000002623) #14	GANAB (ENSMMMG00000002585) #15	B3GAT3 (ENSMMMG00000002571) #16	ROM1 (ENSMMMG00000002567) #17	EML3 (ENSMMMG00000002484) #18	MTA2 (ENSMMMG00000002461) #19	TUT1 (ENSMMMG00000002433) #20	ENSMMMG00000002424 #21	ENSMMMG00000002408 #22	ENSMMMG00000002397 ##22	SCGB1A1 (ENSMMMG00000002393)	ASRGL1 (ENSMMMG00000002386) #24	ENSMMMG00000002372 #29	ENSMMMG00000002360 #28	ENSMMMG00000002256 ##33	BEST1 (ENSMMMG00000002191) #34	FADS3 (ENSMMMG00000002106) #36	FADS2 (ENSMMMG00000002075) ##36	FADS1 (ENSMMMG00000002044) ##36	ENSMMMG00000002036	FEN1 (ENSMMMG00000002027)	TMEM258 (ENSMMMG00000002020)	MYRF (ENSMMMG00000001773)	DAGLA (ENSMMMG00000001711)
Marmotini_b	ANCESTRAL SPECIES	21	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b.a #28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
Arctic ground squirrel	MODERN SPECIES	366	GNG3 (ENSUPAG00010005209) #9	BSCL2 (ENSUPAG00010005172) #8	LRRN4CL (ENSUPAG00010005167)	UBXN1 (ENSUPAG00010005156) #10	UQCC3 (ENSUPAG00010005149) #11	CSKMT (ENSUPAG00010005145) #12	C11orf98 (ENSUPAG00010005135) #13	INTS5 (ENSUPAG00010005127) #14	GANAB (ENSUPAG00010005106) #15	B3GAT3 (ENSUPAG00010005100) #16	ROM1 (ENSUPAG00010005099) #17	EML3 (ENSUPAG00010005056) #18	MTA2 (ENSUPAG00010005038) #19	TUT1 (ENSUPAG00010005020) #20	EEF1G (ENSUPAG00010005012) #21	ENSUPAG00010004999 #22	ENSUPAG00010004996	ENSUPAG00010004986 ##22	ASRGL1 (ENSUPAG00010004983) #24	ENSUPAG00010004973 #29	ENSUPAG00010004955 #28	ENSUPAG00010004946 #29	ENSUPAG00010004941 #28	INCENP (ENSUPAG00010004917) #32	ENSUPAG00010004905 ##33	BEST1 (ENSUPAG00010004888) #34	ENSUPAG00010004814 #35	FADS2 (ENSUPAG00010004799) ##36	FADS1 (ENSUPAG00010004789) ##36	ENSUPAG00010004784	FEN1 (ENSUPAG00010004780)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Camelidae	ANCESTRAL SPECIES	55	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	1	DAGLA (ENSCDRG00005007887)	MYRF (ENSCDRG00005007517)	ENSCDRG00005007463	FEN1 (ENSCDRG00005007453)	ENSCDRG00005007415	FADS1 (ENSCDRG00005007329) ##36	FADS2 (ENSCDRG00005007121) ##36	RAB3IL1 (ENSCDRG00005006782) #35	BEST1 (ENSCDRG00005006707) #34	ENSCDRG00005006575 ##33	INCENP (ENSCDRG00005006531) #32	ENSCDRG00005006491 #29	ENSCDRG00005006462 #28	ENSCDRG00005006418 #28	ENSCDRG00005006356 #28	ENSCDRG00005006269 #22	ENSCDRG00005006247 #28	ASRGL1 (ENSCDRG00005006211) #24	SCGB1A1 (ENSCDRG00005006201)	ENSCDRG00005006152 #22	ENSCDRG00005006109 ##22	EEF1G (ENSCDRG00005006080) #21	TUT1 (ENSCDRG00005006030) #20	MTA2 (ENSCDRG00005005973) #19	EML3 (ENSCDRG00005005818) #18	ROM1 (ENSCDRG00005005805) #17	B3GAT3 (ENSCDRG00005005790) #16	GANAB (ENSCDRG00005005585) #15	INTS5 (ENSCDRG00005005552) #14	CSKMT (ENSCDRG00005005533) #12	LBHD1 (ENSCDRG00005005473)
Arabian camel	MODERN SPECIES	1	BSCL2 (ENSCDRG00005005265) #8	LRRN4CL (ENSCDRG00005005348)	UBXN1 (ENSCDRG00005005366) #10	UQCC3 (ENSCDRG00005005440) #11	LBHD1 (ENSCDRG00005005473)	CSKMT (ENSCDRG00005005533) #12	INTS5 (ENSCDRG00005005552) #14	GANAB (ENSCDRG00005005585) #15	B3GAT3 (ENSCDRG00005005790) #16	ROM1 (ENSCDRG00005005805) #17	EML3 (ENSCDRG00005005818) #18	MTA2 (ENSCDRG00005005973) #19	TUT1 (ENSCDRG00005006030) #20	EEF1G (ENSCDRG00005006080) #21	ENSCDRG00005006109 ##22	ENSCDRG00005006152 #22	SCGB1A1 (ENSCDRG00005006201)	ASRGL1 (ENSCDRG00005006211) #24	ENSCDRG00005006247 #28	ENSCDRG00005006269 #22	ENSCDRG00005006356 #28	ENSCDRG00005006418 #28	ENSCDRG00005006462 #28	ENSCDRG00005006491 #29	INCENP (ENSCDRG00005006531) #32	ENSCDRG00005006575 ##33	BEST1 (ENSCDRG00005006707) #34	RAB3IL1 (ENSCDRG00005006782) #35	FADS2 (ENSCDRG00005007121) ##36	FADS1 (ENSCDRG00005007329) ##36	ENSCDRG00005007415
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.b.n.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Blue whale	MODERN SPECIES	19	GNG3 (ENSBMSG00010008393) #9	BSCL2 (ENSBMSG00010008336) #8	LRRN4CL (ENSBMSG00010008324)	UBXN1 (ENSBMSG00010008293) #10	UQCC3 (ENSBMSG00010008263) #11	CSKMT (ENSBMSG00010008233) #12	LBHD1 (ENSBMSG00010008202)	INTS5 (ENSBMSG00010008179) #14	GANAB (ENSBMSG00010008146) #15	B3GAT3 (ENSBMSG00010008115) #16	ROM1 (ENSBMSG00010008104) #17	EML3 (ENSBMSG00010008039) #18	MTA2 (ENSBMSG00010007990) #19	TUT1 (ENSBMSG00010007969) #20	EEF1G (ENSBMSG00010007952) #21	AHNAK (ENSBMSG00010007921) #22	SCGB1A1 (ENSBMSG00010007899)	ASRGL1 (ENSBMSG00010007885) #24	ENSBMSG00010007872 #28	ENSBMSG00010007862 #29	ENSBMSG00010007851	INCENP (ENSBMSG00010007722) #32	ENSBMSG00010007674	ENSBMSG00010007637 ##33	BEST1 (ENSBMSG00010007587) #34	RAB3IL1 (ENSBMSG00010007458) #35	ENSBMSG00010007377 #36	FADS2 (ENSBMSG00010007330) ##36	FADS1 (ENSBMSG00010007282) ##36	ENSBMSG00010007270	FEN1 (ENSBMSG00010007261)
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.a.b ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Narwhal	MODERN SPECIES	314	GNG3 (ENSMMNG00015019682) #9	BSCL2 (ENSMMNG00015019637) #8	ENSMMNG00015019615	UBXN1 (ENSMMNG00015019592) #10	UQCC3 (ENSMMNG00015019569) #11	CSKMT (ENSMMNG00015019549) #12	LBHD1 (ENSMMNG00015019506)	INTS5 (ENSMMNG00015019476) #14	GANAB (ENSMMNG00015019271) #15	B3GAT3 (ENSMMNG00015019182) #16	ROM1 (ENSMMNG00015019160) #17	EML3 (ENSMMNG00015019097) #18	MTA2 (ENSMMNG00015019012) #19	TUT1 (ENSMMNG00015018972) #20	EEF1G (ENSMMNG00015018940) #21	ENSMMNG00015018882 #22	ENSMMNG00015018842	ASRGL1 (ENSMMNG00015018816) #24	INCENP (ENSMMNG00015018796) #32	ENSMMNG00015018773	ENSMMNG00015018730 ##33	BEST1 (ENSMMNG00015018677) #34	RAB3IL1 (ENSMMNG00015018609) #35	FADS3 (ENSMMNG00015018534) #36	FADS2 (ENSMMNG00015018459) ##36	FADS1 (ENSMMNG00015018422) ##36	ENSMMNG00015018407	FEN1 (ENSMMNG00015018398)	ENSMMNG00015018376	MYRF (ENSMMNG00015018267)	DAGLA (ENSMMNG00015018165)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	185																ENSDLEG00000018495 #22
Beluga whale	MODERN SPECIES	7	BSCL2 (ENSDLEG00000018487) #8	LRRN4CL (ENSDLEG00000018503)	UBXN1 (ENSDLEG00000018521) #10	UQCC3 (ENSDLEG00000018687) #11	METTL12 (ENSDLEG00000018693) #12	CUNH11orf98 (ENSDLEG00000018700) #13	INTS5 (ENSDLEG00000018703) #14	GANAB (ENSDLEG00000018708) #15	B3GAT3 (ENSDLEG00000018722) #16	ROM1 (ENSDLEG00000018727) #17	EML3 (ENSDLEG00000018806) #18	MTA2 (ENSDLEG00000019734) #19	TUT1 (ENSDLEG00000019807) #20	EEF1G (ENSDLEG00000019824) #21	ENSDLEG00000019831 ##22	ENSDLEG00000000042 #22	ENSDLEG00000000054	ASRGL1 (ENSDLEG00000000069) #24	INCENP (ENSDLEG00000000094) #32	ENSDLEG00000000149	FTH1 (ENSDLEG00000000166) ##33	ENSDLEG00000000215 #34	RAB3IL1 (ENSDLEG00000000259) #35	FADS3 (ENSDLEG00000000318) #36	FADS2 (ENSDLEG00000000450) ##36	ENSDLEG00000000465 ##36	ENSDLEG00000000478	FEN1 (ENSDLEG00000000484)	ENSDLEG00000000496	MYRF (ENSDLEG00000000555)	DAGLA (ENSDLEG00000000737)
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	506																ENSPCTG00005021522 #22
Sperm whale	MODERN SPECIES	7	SDHAF2 (ENSPCTG00005006914)	PPP1R32 (ENSPCTG00005006983)	LRRC10B (ENSPCTG00005007103)	SYT7 (ENSPCTG00005007241)	FADS2 (ENSPCTG00005008356) ##36	FADS1 (ENSPCTG00005008419) ##36	ENSPCTG00005008459	FEN1 (ENSPCTG00005008477)	TMEM258 (ENSPCTG00005008491)	MYRF (ENSPCTG00005008529)	ENSPCTG00005008871 #34	RAB3IL1 (ENSPCTG00005008916) #35	ENSPCTG00005009299	INCENP (ENSPCTG00005009388) #32	ENSPCTG00005009578 #22	ENSPCTG00005009626 #22	SLC3A2 (ENSPCTG00005009673)	ENSPCTG00005009866	SLC22A6 (ENSPCTG00005009975)	SLC22A8 (ENSPCTG00005010325)	ENSPCTG00005010706	ENSPCTG00005010850	SLC22A9 (ENSPCTG00005010871)	ENSPCTG00005010978	LGALS12 (ENSPCTG00005011050)	ATL3 (ENSPCTG00005011358)	RTN3 (ENSPCTG00005011595)	ZFTA (ENSPCTG00005011961)	SPINDOC (ENSPCTG00005012035)	RCOR2 (ENSPCTG00005012073)	NAA40 (ENSPCTG00005012111)
Sperm whale	MODERN SPECIES	7	CPSF7 (ENSPCTG00005006786)	SDHAF2 (ENSPCTG00005006914)	PPP1R32 (ENSPCTG00005006983)	LRRC10B (ENSPCTG00005007103)	SYT7 (ENSPCTG00005007241)	FADS2 (ENSPCTG00005008356) ##36	FADS1 (ENSPCTG00005008419) ##36	ENSPCTG00005008459	FEN1 (ENSPCTG00005008477)	TMEM258 (ENSPCTG00005008491)	MYRF (ENSPCTG00005008529)	ENSPCTG00005008871 #34	RAB3IL1 (ENSPCTG00005008916) #35	ENSPCTG00005009299	INCENP (ENSPCTG00005009388) #32	ENSPCTG00005009578 #22	ENSPCTG00005009626 #22	SLC3A2 (ENSPCTG00005009673)	ENSPCTG00005009866	SLC22A6 (ENSPCTG00005009975)	SLC22A8 (ENSPCTG00005010325)	ENSPCTG00005010706	ENSPCTG00005010850	SLC22A9 (ENSPCTG00005010871)	ENSPCTG00005010978	LGALS12 (ENSPCTG00005011050)	ATL3 (ENSPCTG00005011358)	RTN3 (ENSPCTG00005011595)	ZFTA (ENSPCTG00005011961)	SPINDOC (ENSPCTG00005012035)	RCOR2 (ENSPCTG00005012073)
Pecora	ANCESTRAL SPECIES	13	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Yarkand deer	MODERN SPECIES	11	GNG3 (ENSCHYG00000017765) #9	BSCL2 (ENSCHYG00000017544) #8	LRRN4CL (ENSCHYG00000017512)	UBXN1 (ENSCHYG00000017331) #10	UQCC3 (ENSCHYG00000017276) #11	LBHD1 (ENSCHYG00000017004)	CSKMT (ENSCHYG00000016962) #12	INTS5 (ENSCHYG00000016919) #14	GANAB (ENSCHYG00000016139) #15	B3GAT3 (ENSCHYG00000015841) #16	ROM1 (ENSCHYG00000015732) #17	EML3 (ENSCHYG00000015378) #18	MTA2 (ENSCHYG00000015186) #19	TUT1 (ENSCHYG00000015098) #20	EEF1G (ENSCHYG00000014986) #21	ENSCHYG00000014832 #22	ENSCHYG00000014697 ##22	ENSCHYG00000014657	ASRGL1 (ENSCHYG00000014526) #24	ENSCHYG00000014496 #28	ENSCHYG00000014447 #29	INCENP (ENSCHYG00000014341) #32	ENSCHYG00000014297	ENSCHYG00000014166 ##33	BEST1 (ENSCHYG00000014024) #34	RAB3IL1 (ENSCHYG00000013498) #35	FADS3 (ENSCHYG00000013278) #36	ENSCHYG00000012672 ##36	FADS1 (ENSCHYG00000012487) ##36	ENSCHYG00000012454	FEN1 (ENSCHYG00000012431)
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b
Siberian musk deer	MODERN SPECIES	1224	ENSMMSG00000012801 #9	LRRN4CL (ENSMMSG00000012817)	UBXN1 (ENSMMSG00000012852) #10	UQCC3 (ENSMMSG00000012897) #11	LBHD1 (ENSMMSG00000012923)	CSKMT (ENSMMSG00000012987) #12	INTS5 (ENSMMSG00000013012) #14	GANAB (ENSMMSG00000013077) #15	B3GAT3 (ENSMMSG00000013309) #16	ENSMMSG00000013341 #17	EML3 (ENSMMSG00000013365) #18	MTA2 (ENSMMSG00000013445) #19	TUT1 (ENSMMSG00000013495) #20	EEF1G (ENSMMSG00000013530) #21	ENSMMSG00000013555 ##22	ENSMMSG00000013596 #22	SCGB1A1 (ENSMMSG00000013623)	ENSMMSG00000013643 #24	ENSMMSG00000013664 #28	ENSMMSG00000013681 #29	INCENP (ENSMMSG00000013713) #32	ENSMMSG00000013740 ##33	BEST1 (ENSMMSG00000013766) #34	RAB3IL1 (ENSMMSG00000013829) #35	FADS3 (ENSMMSG00000013946) #36	ENSMMSG00000014017 ##36	FADS1 (ENSMMSG00000014104) ##36	ENSMMSG00000014149	FEN1 (ENSMMSG00000014163)	ENSMMSG00000014177	MYRF (ENSMMSG00000014220)
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Caprinae	ANCESTRAL SPECIES	20	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b
Goat	MODERN SPECIES	21	GNG3 (ENSCHIG00000015824) #9	BSCL2 (ENSCHIG00000026480) #8	LRRN4CL (ENSCHIG00000009031)	UBXN1 (ENSCHIG00000006820) #10	UQCC3 (ENSCHIG00000018953) #11	CSKMT (ENSCHIG00000011409) #12	C11orf98 (ENSCHIG00000022514) #13	INTS5 (ENSCHIG00000013982) #14	GANAB (ENSCHIG00000022447) #15	ENSCHIG00000016332 #16	ROM1 (ENSCHIG00000010262) #17	EML3 (ENSCHIG00000021585) #18	MTA2 (ENSCHIG00000015501) #19	TUT1 (ENSCHIG00000006765) #20	ENSCHIG00000022487 #21	AHNAK (ENSCHIG00000015249) #22	ASRGL1 (ENSCHIG00000024873) #24	ENSCHIG00000018172 #28	ENSCHIG00000013354 #29	INCENP (ENSCHIG00000023449) #32	FTH1 (ENSCHIG00000018949) ##33	BEST1 (ENSCHIG00000005599) #34	RAB3IL1 (ENSCHIG00000018161) #35	FADS3 (ENSCHIG00000026956) #36	ENSCHIG00000015460 ##36	FADS1 (ENSCHIG00000022314) ##36	ENSCHIG00000013437	FEN1 (ENSCHIG00000009155)	ENSCHIG00000018241	MYRF (ENSCHIG00000003036)	DAGLA (ENSCHIG00000020106)
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
American bison	MODERN SPECIES	3248	BSCL2 (ENSBBBG00000005208) #8	LRRN4CL (ENSBBBG00000019428)	UBXN1 (ENSBBBG00000009187) #10	UQCC3 (ENSBBBG00000019369) #11	LBHD1 (ENSBBBG00000019358)	CSKMT (ENSBBBG00000007511) #12	INTS5 (ENSBBBG00000005016) #14	GANAB (ENSBBBG00000019296) #15	B3GAT3 (ENSBBBG00000004913) #16	ROM1 (ENSBBBG00000019099) #17	EML3 (ENSBBBG00000019090) #18	MTA2 (ENSBBBG00000019072) #19	TUT1 (ENSBBBG00000019032) #20	EEF1G (ENSBBBG00000019015) #21	ENSBBBG00000018998 ##22	ENSBBBG00000004835 #22	ENSBBBG00000018961	ASRGL1 (ENSBBBG00000004812) #24	ENSBBBG00000018946 #28	ENSBBBG00000004805 #29	INCENP (ENSBBBG00000018936) #32	ENSBBBG00000018919 ##33	BEST1 (ENSBBBG00000004787) #34	RAB3IL1 (ENSBBBG00000018902) #35	FADS3 (ENSBBBG00000018899) #36	ENSBBBG00000004767 ##36	FADS1 (ENSBBBG00000018803) ##36	FEN1 (ENSBBBG00000008945)	ENSBBBG00000004696	ENSBBBG00000009148	DAGLA (ENSBBBG00000004679)
Bos	ANCESTRAL SPECIES	11	ENSGT00940000161486	ENSGT00940000161805.p.b	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.m #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.m #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Cow	MODERN SPECIES	21	GNG3 (ENSBTAG00000002508) #9	BSCL2 (ENSBTAG00000002503) #8	LRRN4CL (ENSBTAG00000010484)	UBXN1 (ENSBTAG00000010481) #10	UQCC3 (ENSBTAG00000010470) #11	CSKMT (ENSBTAG00000022293) #12	C29H11orf98 (ENSBTAG00000010465) #13	INTS5 (ENSBTAG00000010455) #14	GANAB (ENSBTAG00000016956) #15	B3GAT3 (ENSBTAG00000016950) #16	ROM1 (ENSBTAG00000001188) #17	EML3 (ENSBTAG00000011872) #18	MTA2 (ENSBTAG00000011865) #19	TUT1 (ENSBTAG00000011846) #20	EEF1G (ENSBTAG00000011843) #21	AHNAK (ENSBTAG00000013468) #22	SCGB1A1 (ENSBTAG00000032918)	ASRGL1 (ENSBTAG00000006910) #24	SCGB2A2 (ENSBTAG00000015940) #28	SCGB1D (ENSBTAG00000040070) #29	INCENP (ENSBTAG00000050061) #32	FTH1 (ENSBTAG00000011184) ##33	BEST1 (ENSBTAG00000011186) #34	RAB3IL1 (ENSBTAG00000015745) #35	FADS3 (ENSBTAG00000015511) #36	FADS2 (ENSBTAG00000015505) ##36	FADS1 (ENSBTAG00000022294) ##36	ENSBTAG00000053898	FEN1 (ENSBTAG00000000064)	TMEM258 (ENSBTAG00000032557)	MYRF (ENSBTAG00000006990)
Hybrid Bos Indicus	MODERN SPECIES	21	HNRNPUL2 (ENSBIXG00005006206) #7	BSCL2 (ENSBIXG00005011232) #8	GNG3 (ENSBIXG00005011192) #9	LRRN4CL (ENSBIXG00005011174)	UBXN1 (ENSBIXG00005011165) #10	UQCC3 (ENSBIXG00005011106) #11	LBHD1 (ENSBIXG00005011086)	CSKMT (ENSBIXG00005010973) #12	INTS5 (ENSBIXG00005000974) #14	GANAB (ENSBIXG00005010906) #15	B3GAT3 (ENSBIXG00005000941) #16	ROM1 (ENSBIXG00005010720) #17	EML3 (ENSBIXG00005010701) #18	MTA2 (ENSBIXG00005000637) #19	TUT1 (ENSBIXG00005000659) #20	AHNAK (ENSBIXG00005000904) #22	ENSBIXG00005000712	ASRGL1 (ENSBIXG00005000896) #24	ENSBIXG00005010523 #28	ENSBIXG00005010508 #29	INCENP (ENSBIXG00005010485) #32	ENSBIXG00005000888 ##33	BEST1 (ENSBIXG00005010422) #34	ENSBIXG00005010391 #35	FADS3 (ENSBIXG00005000842) #36	ENSBIXG00005010140 ##36	FADS1 (ENSBIXG00005010078) ##36	FEN1 (ENSBIXG00005010025)	TMEM258 (ENSBIXG00005010011)	MYRF (ENSBIXG00005000732)	DAGLA (ENSBIXG00005009918)
Bos_a	ANCESTRAL SPECIES	50	ENSGT00390000005644	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00940000161278	ENSGT00390000007109	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000162423	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a
Wild yak	MODERN SPECIES	1714	GNG3 (ENSBMUG00000023415) #9	BSCL2 (ENSBMUG00000023406) #8	UBXN1 (ENSBMUG00000023388) #10	UQCC3 (ENSBMUG00000023373) #11	CSKMT (ENSBMUG00000023360) #12	ENSBMUG00000023348 #13	INTS5 (ENSBMUG00000023343) #14	GANAB (ENSBMUG00000023315) #15	B3GAT3 (ENSBMUG00000023252) #16	ROM1 (ENSBMUG00000023222) #17	EML3 (ENSBMUG00000023212) #18	ENSBMUG00000023148 #19	ENSBMUG00000023138 #19	TUT1 (ENSBMUG00000023128) #20	EEF1G (ENSBMUG00000023113) #21	ENSBMUG00000023096 #22	ENSBMUG00000023076 ##22
Suina	ANCESTRAL SPECIES	14	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.a.c.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Chacoan peccary	MODERN SPECIES	920	GNG3 (ENSCWAG00000018653) #9	LRRN4CL (ENSCWAG00000018681)	UBXN1 (ENSCWAG00000018701) #10	UQCC3 (ENSCWAG00000018794) #11	CSKMT (ENSCWAG00000018813) #12	C11orf98 (ENSCWAG00000018837) #13	INTS5 (ENSCWAG00000018861) #14	GANAB (ENSCWAG00000018894) #15	B3GAT3 (ENSCWAG00000019113) #16	ROM1 (ENSCWAG00000019159) #17	EML3 (ENSCWAG00000019185) #18	MTA2 (ENSCWAG00000019233) #19	TUT1 (ENSCWAG00000019273) #20	EEF1G (ENSCWAG00000019299) #21	ENSCWAG00000019329 ##22	ENSCWAG00000019398 #22	SCGB1A1 (ENSCWAG00000019506)	ASRGL1 (ENSCWAG00000019530) #24	ENSCWAG00000019557 #28	ENSCWAG00000019575 ##33	BEST1 (ENSCWAG00000019634) #34	RAB3IL1 (ENSCWAG00000019675) #35	FADS3 (ENSCWAG00000019817) #36	FADS2 (ENSCWAG00000019902) ##36	ENSCWAG00000019984 ##36	ENSCWAG00000020002	FEN1 (ENSCWAG00000020017)	ENSCWAG00000020024	MYRF (ENSCWAG00000004266)
Pig	DUPLICATION
Pig	MODERN SPECIES	10	ENSSSCG00000032197 #9	UBXN1 (ENSSSCG00000023110) #10	UQCC3 (ENSSSCG00000038370) #11	CSKMT (ENSSSCG00000027847) #12	C11orf98 (ENSSSCG00000058339) #13	INTS5 (ENSSSCG00000028275) #14	GANAB (ENSSSCG00000030653) #15	B3GAT3 (ENSSSCG00000020809) #16	ROM1 (ENSSSCG00000033054) #17	EML3 (ENSSSCG00000013061) #18	MTA2 (ENSSSCG00000013062) #19	TUT1 (ENSSSCG00000013063) #20	ENSSSCG00000013064 #21	ENSSSCG00000036669 ##22	ENSSSCG00000033010 #22	ENSSSCG00000055375 #22	SCGB1A1 (ENSSSCG00000013060)	ASRGL1 (ENSSSCG00000013065) #24	PHEROC (ENSSSCG00000013067) #28	SCGB1D1 (ENSSSCG00000013068) #29	INCENP (ENSSSCG00000013066) #32	ENSSSCG00000014540 ##33	BEST1 (ENSSSCG00000023090) #34	RAB3IL1 (ENSSSCG00000013074) #35	FADS3 (ENSSSCG00000013073) #36	FADS2 (ENSSSCG00000013072) ##36	FADS1 (ENSSSCG00000024015) ##36	FEN1 (ENSSSCG00000063433)	TMEM258 (ENSSSCG00000027538)	ENSSSCG00000013078	DAGLA (ENSSSCG00000013079)
Pig	MODERN SPECIES	10	BSCL2 (ENSSSCG00000020823) #8	ENSSSCG00000032197 #9	UBXN1 (ENSSSCG00000023110) #10	UQCC3 (ENSSSCG00000038370) #11	CSKMT (ENSSSCG00000027847) #12	C11orf98 (ENSSSCG00000058339) #13	INTS5 (ENSSSCG00000028275) #14	GANAB (ENSSSCG00000030653) #15	B3GAT3 (ENSSSCG00000020809) #16	ROM1 (ENSSSCG00000033054) #17	EML3 (ENSSSCG00000013061) #18	MTA2 (ENSSSCG00000013062) #19	TUT1 (ENSSSCG00000013063) #20	ENSSSCG00000013064 #21	ENSSSCG00000036669 ##22	ENSSSCG00000033010 #22	ENSSSCG00000055375 #22	SCGB1A1 (ENSSSCG00000013060)	ASRGL1 (ENSSSCG00000013065) #24	PHEROC (ENSSSCG00000013067) #28	SCGB1D1 (ENSSSCG00000013068) #29	INCENP (ENSSSCG00000013066) #32	ENSSSCG00000014540 ##33	BEST1 (ENSSSCG00000023090) #34	RAB3IL1 (ENSSSCG00000013074) #35	FADS3 (ENSSSCG00000013073) #36	FADS2 (ENSSSCG00000013072) ##36	FADS1 (ENSSSCG00000024015) ##36	FEN1 (ENSSSCG00000063433)	TMEM258 (ENSSSCG00000027538)	ENSSSCG00000013078
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Carnivora	ANCESTRAL SPECIES	7	ENSGT00390000011639 #8	ENSGT01100000263497.B.c.a #9	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Felidae	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Cat	DUPLICATION
Cat	MODERN SPECIES	241	BSCL2 (ENSFCAG00000018428) #8	LRRN4CL (ENSFCAG00000044682)	UBXN1 (ENSFCAG00000008866) #10	UQCC3 (ENSFCAG00000026508) #11	CSKMT (ENSFCAG00000019062) #12	LBHD1 (ENSFCAG00000038803)	INTS5 (ENSFCAG00000022488) #14	GANAB (ENSFCAG00000008865) #15	B3GAT3 (ENSFCAG00000008864) #16	ROM1 (ENSFCAG00000008863) #17	EML3 (ENSFCAG00000008862) #18	MTA2 (ENSFCAG00000008861) #19	TUT1 (ENSFCAG00000008859) #20	EEF1G (ENSFCAG00000008858) #21	ENSFCAG00000047570 #22	ENSFCAG00000045898 #22	ENSFCAG00000050660 ##22	SCGB1A1 (ENSFCAG00000008856)	ASRGL1 (ENSFCAG00000008855) #24	ENSFCAG00000024754 #28	ENSFCAG00000034757 #29	INCENP (ENSFCAG00000002264) #32	FTH1 (ENSFCAG00000007382) ##33	BEST1 (ENSFCAG00000050693) #34	RAB3IL1 (ENSFCAG00000007376) #35	FADS3 (ENSFCAG00000027535) #36	FADS2 (ENSFCAG00000024030) ##36	FADS1 (ENSFCAG00000013686) ##36	ENSFCAG00000035555	FEN1 (ENSFCAG00000013685)	TMEM258 (ENSFCAG00000013684)
Cat	MODERN SPECIES	241	ENSFCAG00000035265 #9	BSCL2 (ENSFCAG00000018428) #8	LRRN4CL (ENSFCAG00000044682)	UBXN1 (ENSFCAG00000008866) #10	UQCC3 (ENSFCAG00000026508) #11	CSKMT (ENSFCAG00000019062) #12	LBHD1 (ENSFCAG00000038803)	INTS5 (ENSFCAG00000022488) #14	GANAB (ENSFCAG00000008865) #15	B3GAT3 (ENSFCAG00000008864) #16	ROM1 (ENSFCAG00000008863) #17	EML3 (ENSFCAG00000008862) #18	MTA2 (ENSFCAG00000008861) #19	TUT1 (ENSFCAG00000008859) #20	EEF1G (ENSFCAG00000008858) #21	ENSFCAG00000047570 #22	ENSFCAG00000045898 #22	ENSFCAG00000050660 ##22	SCGB1A1 (ENSFCAG00000008856)	ASRGL1 (ENSFCAG00000008855) #24	ENSFCAG00000024754 #28	ENSFCAG00000034757 #29	INCENP (ENSFCAG00000002264) #32	FTH1 (ENSFCAG00000007382) ##33	BEST1 (ENSFCAG00000050693) #34	RAB3IL1 (ENSFCAG00000007376) #35	FADS3 (ENSFCAG00000027535) #36	FADS2 (ENSFCAG00000024030) ##36	FADS1 (ENSFCAG00000013686) ##36	ENSFCAG00000035555	FEN1 (ENSFCAG00000013685)
Panthera	ANCESTRAL SPECIES	18	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650.a.a #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650.a.a #34	ENSGT00940000158650.b #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
leopard	MODERN SPECIES	64	HNRNPUL2 (ENSPPRG00000006380) #7	ENSPPRG00000006909 #9	BSCL2 (ENSPPRG00000008935) #8	LRRN4CL (ENSPPRG00000015844)	UBXN1 (ENSPPRG00000010233) #10	UQCC3 (ENSPPRG00000010596) #11	C11orf98 (ENSPPRG00000010833) #13	INTS5 (ENSPPRG00000011031) #14	GANAB (ENSPPRG00000013482) #15	B3GAT3 (ENSPPRG00000013948) #16	ROM1 (ENSPPRG00000014079) #17	EML3 (ENSPPRG00000023815) #18	MTA2 (ENSPPRG00000022897) #19	TUT1 (ENSPPRG00000000257) #20	EEF1G (ENSPPRG00000000804) #21	ENSPPRG00000001160 #22	ENSPPRG00000001704	ASRGL1 (ENSPPRG00000002052) #24	ENSPPRG00000002262 #28	INCENP (ENSPPRG00000006209) #32	ENSPPRG00000006764 ##33	ENSPPRG00000007445 #34	ENSPPRG00000007627 #34	RAB3IL1 (ENSPPRG00000008696) #35	FADS3 (ENSPPRG00000009918) #36	FADS2 (ENSPPRG00000011694) ##36	FADS1 (ENSPPRG00000012671) ##36	ENSPPRG00000012890	FEN1 (ENSPPRG00000016819)	ENSPPRG00000013362	MYRF (ENSPPRG00000024144)
lion	MODERN SPECIES	10	ENSPLOG00000007595 #9	BSCL2 (ENSPLOG00000007556) #8	LRRN4CL (ENSPLOG00000009871)	UBXN1 (ENSPLOG00000009769) #10	UQCC3 (ENSPLOG00000009743) #11	CSKMT (ENSPLOG00000009731) #12	LBHD1 (ENSPLOG00000009643)	INTS5 (ENSPLOG00000009619) #14	GANAB (ENSPLOG00000009125) #15	B3GAT3 (ENSPLOG00000008977) #16	ROM1 (ENSPLOG00000008948) #17	EML3 (ENSPLOG00000008783) #18	MTA2 (ENSPLOG00000008641) #19	TUT1 (ENSPLOG00000008550) #20	EEF1G (ENSPLOG00000008495) #21	ENSPLOG00000008461 #22	ENSPLOG00000008404 ##22	ENSPLOG00000008372	ASRGL1 (ENSPLOG00000008346) #24	ENSPLOG00000008312 #28	ENSPLOG00000008289	ENSPLOG00000008201 #29	INCENP (ENSPLOG00000008155) #32	ENSPLOG00000008095 ##33	BEST1 (ENSPLOG00000007969) #34	RAB3IL1 (ENSPLOG00000007741) #35	FADS3 (ENSPLOG00000007672) #36	FADS2 (ENSPLOG00000007565) ##36	FADS1 (ENSPLOG00000007444) ##36	ENSPLOG00000007425	FEN1 (ENSPLOG00000007415)
Caniformia	ANCESTRAL SPECIES	21	ENSGT00390000011639 #8	ENSGT01100000263497.B.c.a #9	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802 #28	ENSGT00530000063866.j.b #29	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Canidae	ANCESTRAL SPECIES	13	ENSGT01100000263497.B.c.a #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.j.b #29	ENSGT00390000013802 #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00520000061410	ENSGT00390000010089.f
Red fox	MODERN SPECIES	49	HNRNPUL2 (ENSVVUG00000029847) #7	GNG3 (ENSVVUG00000029850) #9	BSCL2 (ENSVVUG00000029852) #8	ENSVVUG00000029854	UBXN1 (ENSVVUG00000029856) #10	UQCC3 (ENSVVUG00000029857) #11	CSKMT (ENSVVUG00000029858) #12	INTS5 (ENSVVUG00000029860) #14	GANAB (ENSVVUG00000029861) #15	B3GAT3 (ENSVVUG00000029862) #16	ROM1 (ENSVVUG00000029863) #17	EML3 (ENSVVUG00000029864) #18	MTA2 (ENSVVUG00000029872) #19	TUT1 (ENSVVUG00000029882) #20	EEF1G (ENSVVUG00000029883) #21	AHNAK (ENSVVUG00000029889) #22	SCGB1A1 (ENSVVUG00000029891)	ASRGL1 (ENSVVUG00000029892) #24	ENSVVUG00000029894 #29	ENSVVUG00000029895 #28
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.b #22
Dog	MODERN SPECIES	9	HNRNPUL2 (ENSCAFG00845008372) #7	BSCL2 (ENSCAFG00845008494) #8	GNG3 (ENSCAFG00845008569) #9	LRRN4CL (ENSCAFG00845008587)	UBXN1 (ENSCAFG00845008628) #10	UQCC3 (ENSCAFG00845008750) #11	C18H11orf98 (ENSCAFG00845008795)	CSKMT (ENSCAFG00845008870) #12	INTS5 (ENSCAFG00845008915) #14	GANAB (ENSCAFG00845008960) #15	B3GAT3 (ENSCAFG00845009269) #16	ROM1 (ENSCAFG00845009299) #17	EML3 (ENSCAFG00845009347) #18	MTA2 (ENSCAFG00845009498) #19	TUT1 (ENSCAFG00845009613) #20	AHNAK (ENSCAFG00845009750) #22	SCGB1A1 (ENSCAFG00845009877) #24	ENSCAFG00845010032 #28	ENSCAFG00845010134 #29	INCENP (ENSCAFG00845010188) #32	ENSCAFG00845010380 ##33	BEST1 (ENSCAFG00845010439) #34	RAB3IL1 (ENSCAFG00845010751) #35	FADS3 (ENSCAFG00845010971) #36	FADS2 (ENSCAFG00845011145) ##36	FADS1 (ENSCAFG00845011265) ##36	FEN1 (ENSCAFG00845011341)	ENSCAFG00845011360	TMEM258 (ENSCAFG00845011383)	MYRF (ENSCAFG00845011527)	DAGLA (ENSCAFG00845011816)
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Mustelinae	ANCESTRAL SPECIES	3	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a
Ferret	MODERN SPECIES	314	TTC9C (ENSMPUG00000013698)	HNRNPUL2 (ENSMPUG00000013707) #7	GNG3 (ENSMPUG00000013710) #9	BSCL2 (ENSMPUG00000013712) #8	UBXN1 (ENSMPUG00000013715) #10	LBHD1 (ENSMPUG00000013735)	CSKMT (ENSMPUG00000013738) #12	INTS5 (ENSMPUG00000013741) #14	GANAB (ENSMPUG00000013744) #15	ROM1 (ENSMPUG00000013858) #17	B3GAT3 (ENSMPUG00000013860) #16	EML3 (ENSMPUG00000013879) #18	MTA2 (ENSMPUG00000013883) #19	TUT1 (ENSMPUG00000013938) #20	EEF1G (ENSMPUG00000013942) #21	ENSMPUG00000013984 #22	SCGB1A1 (ENSMPUG00000013992)	ASRGL1 (ENSMPUG00000013995) #24	ENSMPUG00000013998 #29	ENSMPUG00000014001 #28	ENSMPUG00000014005 #29	ENSMPUG00000014008 #28	ENSMPUG00000014011 #29	INCENP (ENSMPUG00000014015) #32	ENSMPUG00000014017	ENSMPUG00000014030 ##33	BEST1 (ENSMPUG00000014068) #34	RAB3IL1 (ENSMPUG00000014075) #35	FADS3 (ENSMPUG00000014102) #36	FADS2 (ENSMPUG00000014108) ##36	FADS1 (ENSMPUG00000014112) ##36
American mink	MODERN SPECIES	215	BSCL2 (ENSNVIG00000020778) #8	GBG3 (ENSNVIG00000020795) #9	LRRN4CL (ENSNVIG00000020803)	UBXN1 (ENSNVIG00000020815) #10	UQCC3 (ENSNVIG00000020874) #11	MTL12 (ENSNVIG00000020886) #12	INTS5 (ENSNVIG00000020902) #14	GANAB (ENSNVIG00000020917) #15	B3GAT3 (ENSNVIG00000020996) #16	ROM1 (ENSNVIG00000021007) #17	EML3 (ENSNVIG00000021014) #18	MTA2 (ENSNVIG00000021082) #19	TUT1 (ENSNVIG00000021132) #20	EEF1G (ENSNVIG00000021149) #21	ENSNVIG00000021179 ##22	ENSNVIG00000021198 #22	SCGB1A1 (ENSNVIG00000021208)	ASRGL1 (ENSNVIG00000021214) #24	ENSNVIG00000021239 #29	ENSNVIG00000021243 #28	ENSNVIG00000021252 #29	ENSNVIG00000021260	ENSNVIG00000021274 #29	INCENP (ENSNVIG00000021280) #32	ENSNVIG00000021327 ##33	BEST1 (ENSNVIG00000021351) #34	R3GEF (ENSNVIG00000021368) #35	FADS3 (ENSNVIG00000021398) #36	FADS2 (ENSNVIG00000021440) ##36	ENSNVIG00000021464	FEN1 (ENSNVIG00000021470)
Ursidae	ANCESTRAL SPECIES	2	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457.cb #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Giant Panda	MODERN SPECIES	7	ENSAMEG00000002116 #9	GNG3 (ENSAMEG00000006462) #9	BSCL2 (ENSAMEG00000006466) #8	UBXN1 (ENSAMEG00000006490) #10	UQCC3 (ENSAMEG00000020260) #11	CSKMT (ENSAMEG00000006516) #12	LBHD1 (ENSAMEG00000006512)	INTS5 (ENSAMEG00000006517) #14	GANAB (ENSAMEG00000006520) #15	B3GAT3 (ENSAMEG00000006637) #16	ROM1 (ENSAMEG00000006650) #17	EML3 (ENSAMEG00000006659) #18	MTA2 (ENSAMEG00000006678) #19	TUT1 (ENSAMEG00000006723) #20	ENSAMEG00000006745 #21	ENSAMEG00000025702 #22	ENSAMEG00000025259 ##22	ENSAMEG00000006786	ASRGL1 (ENSAMEG00000006791) #24	ENSAMEG00000025507 #29	ENSAMEG00000030118 #28	INCENP (ENSAMEG00000016838) #32	ENSAMEG00000016831 ##33	BEST1 (ENSAMEG00000016808) #34	RAB3IL1 (ENSAMEG00000016803) #35	FADS3 (ENSAMEG00000016772) #36	ENSAMEG00000016725 ##36	FADS1 (ENSAMEG00000016696) ##36	ENSAMEG00000027333	ENSAMEG00000016694	MYRF (ENSAMEG00000016669)
Ursus	ANCESTRAL SPECIES	63	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457.cb #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00950000182841.b.a.a.b.b.c.a ##33	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
American black bear	MODERN SPECIES	1548	BSCL2 (ENSUAMG00000025972) #8	GNG3 (ENSUAMG00000025973) #9	LRRN4CL (ENSUAMG00000025974)	UBXN1 (ENSUAMG00000025975) #10	UQCC3 (ENSUAMG00000025976) #11	CSKMT (ENSUAMG00000025977) #12	C11orf98 (ENSUAMG00000025979) #13	INTS5 (ENSUAMG00000025981) #14	GANAB (ENSUAMG00000026042) #15	B3GAT3 (ENSUAMG00000027142) #16	ROM1 (ENSUAMG00000027144) #17	EML3 (ENSUAMG00000027153) #18	MTA2 (ENSUAMG00000027236) #19	TUT1 (ENSUAMG00000027237) #20	EEF1G (ENSUAMG00000027238) #21	ENSUAMG00000027239 #22	ENSUAMG00000027240	ASRGL1 (ENSUAMG00000027241) #24
Polar bear	MODERN SPECIES	303	BSCL2 (ENSUMAG00000014444) #8	LRRN4CL (ENSUMAG00000014439)	UBXN1 (ENSUMAG00000014411) #10	UQCC3 (ENSUMAG00000014404) #11	CSKMT (ENSUMAG00000014401) #12	C11orf98 (ENSUMAG00000014389) #13	INTS5 (ENSUMAG00000014386) #14	ENSUMAG00000014377 #15	ENSUMAG00000014362 #15	B3GAT3 (ENSUMAG00000014361) #16	ROM1 (ENSUMAG00000014360) #17	EML3 (ENSUMAG00000014237) #18	MTA2 (ENSUMAG00000012887) #19	TUT1 (ENSUMAG00000012710) #20	EEF1G (ENSUMAG00000012578) #21	ENSUMAG00000012558 #22	ENSUMAG00000012537 ##22	SCGB1A1 (ENSUMAG00000012532)	ASRGL1 (ENSUMAG00000012529) #24	ENSUMAG00000012527 #29	ENSUMAG00000012524 #28	ENSUMAG00000012520 #29	ENSUMAG00000012516 #28	ENSUMAG00000012499 ##33	BEST1 (ENSUMAG00000012478) #34	ENSUMAG00000012469 #36	ENSUMAG00000012456 #36	FADS2 (ENSUMAG00000012446) ##36	FADS1 (ENSUMAG00000012081) ##36	ENSUMAG00000012035	FEN1 (ENSUMAG00000012034)
Laurasiatheria_c	ANCESTRAL SPECIES	20	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Equus	ANCESTRAL SPECIES	11	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b.b	ENSGT00950000183045.A.a.a.g #24	ENSGT00530000063866.k.a.a #29	ENSGT00390000013802.t.a #28	ENSGT00530000063866.k.a.b #29	ENSGT00530000063866.l #29	ENSGT00390000013802.t.b #28	ENSGT00950000183045.A.a.a.h #24	ENSGT00940000155073.b.a.a	ENSGT00530000063866.k.b.b #29	ENSGT00390000013802.s.b #28	ENSGT00390000013802.s.a #28	ENSGT00530000063866.k.b.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.a.c.a.b.a.b ##33
Horse	MODERN SPECIES	3	HNRNPUL2 (ENSECAG00000020298) #7	GNG3 (ENSECAG00000012185) #9	BSCL2 (ENSECAG00000018657) #8	LRRN4CL (ENSECAG00000005381)	UBXN1 (ENSECAG00000017404) #10	UQCC3 (ENSECAG00000017332) #11	LBHD1 (ENSECAG00000040586)	CSKMT (ENSECAG00000017322) #12	C11orf98 (ENSECAG00000055466) #13	GANAB (ENSECAG00000014477) #15	B3GAT3 (ENSECAG00000013416) #16	ROM1 (ENSECAG00000013399) #17	MTA2 (ENSECAG00000009847) #18	TUT1 (ENSECAG00000009471) #20	EEF1G (ENSECAG00000014334) #21	AHNAK (ENSECAG00000034383) #22	ENSECAG00000044462	ASRGL1 (ENSECAG00000013093) #24	ENSECAG00000013056 #29	ENSECAG00000039162	ENSECAG00000012203 #28	ENSECAG00000012519	ENSECAG00000059472 #29	ENSECAG00000028903 #29	ENSECAG00000010565 #28	ENSECAG00000037231 #24	ENSECAG00000034235	ENSECAG00000039036	ENSECAG00000010614 #29	ENSECAG00000043238 #28	ENSECAG00000028239 #28
Donkey	MODERN SPECIES	8	BSCL2 (ENSEASG00005011244) #8	LRRN4CL (ENSEASG00005025754)	UBXN1 (ENSEASG00005011185) #10	UQCC3 (ENSEASG00005034303) #11	CSKMT (ENSEASG00005034678) #12	LBHD1 (ENSEASG00005030712)	INTS5 (ENSEASG00005011174) #14	GANAB (ENSEASG00005009472) #15	B3GAT3 (ENSEASG00005009313) #16	ROM1 (ENSEASG00005009310) #17	EML3 (ENSEASG00005009301) #18	MTA2 (ENSEASG00005007551) #19	TUT1 (ENSEASG00005007531) #20	EEF1G (ENSEASG00005007513) #21	ENSEASG00005032006	ENSEASG00005026708 #22	ENSEASG00005030386 #24	ENSEASG00005034855 #29	ENSEASG00005033208 #28	ENSEASG00005004410 #29	ENSEASG00005025058 #29	ENSEASG00005004407 #28	ENSEASG00005007043 #24	ENSEASG00005019637	ENSEASG00005028002	ENSEASG00005009090 #29	ENSEASG00005026123 #28	ENSEASG00005009091 #28	ENSEASG00005036713 #29	INCENP (ENSEASG00005009084) #32	ENSEASG00005036587 ##33
Chiroptera	ANCESTRAL SPECIES	14	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00730000111073.k #32	ENSGT00530000063866 #29	ENSGT00730000111073.l #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Microchiroptera	ANCESTRAL SPECIES	13	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00730000111073.l #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Greater horseshoe bat	MODERN SPECIES	2	GNG3 (ENSRFEG00010012628) #9	BSCL2 (ENSRFEG00010012669) #8	LRRN4CL (ENSRFEG00010012818)	UBXN1 (ENSRFEG00010012842) #10	UQCC3 (ENSRFEG00010012979) #11	CSKMT (ENSRFEG00010013001) #12	C11orf98 (ENSRFEG00010013053) #13	INTS5 (ENSRFEG00010013105) #14	GANAB (ENSRFEG00010013176) #15	B3GAT3 (ENSRFEG00010013706) #16	ROM1 (ENSRFEG00010013764) #17	EML3 (ENSRFEG00010013823) #18	MTA2 (ENSRFEG00010013987) #19	TUT1 (ENSRFEG00010014303) #20	EEF1G (ENSRFEG00010014387) #21	AHNAK (ENSRFEG00010014569) #22	SCGB1A1 (ENSRFEG00010014646)	ASRGL1 (ENSRFEG00010014743) #24	ENSRFEG00010014886 #28	ENSRFEG00010014944 #28	ENSRFEG00010015100 #28	INCENP (ENSRFEG00010015121) #32	ENSRFEG00010015154 ##33	RAB3IL1 (ENSRFEG00010015301) #35	FADS1 (ENSRFEG00010015439) ##36	FADS2 (ENSRFEG00010000561) ##36	ENSRFEG00010000627	FEN1 (ENSRFEG00010000639)	ENSRFEG00010000644	MYRF (ENSRFEG00010000719)	DAGLA (ENSRFEG00010000953)
Microbat	MODERN SPECIES	1654	ZBTB3 (ENSMLUG00000011020)	TTC9C (ENSMLUG00000010981)	HNRNPUL2 (ENSMLUG00000000412) #7	BSCL2 (ENSMLUG00000024511) #8	UQCC3 (ENSMLUG00000024698) #11	UBXN1 (ENSMLUG00000000406) #10	CSKMT (ENSMLUG00000023559) #12	C11orf98 (ENSMLUG00000000396) #13	INTS5 (ENSMLUG00000000391) #14	GANAB (ENSMLUG00000000384) #15	B3GAT3 (ENSMLUG00000000383) #16	EML3 (ENSMLUG00000000365) #18	MTA2 (ENSMLUG00000000357) #19	TUT1 (ENSMLUG00000000349) #20	EEF1G (ENSMLUG00000000342) #21	AHNAK (ENSMLUG00000006351) #22
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00390000011639.d #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866 #29	ENSGT00390000013802 #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a
Xenarthra	ANCESTRAL SPECIES	58	ENSGT01100000263497.B #9	ENSGT00390000011639.d #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000159921 #17	ENSGT00940000156954 #16	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24
Armadillo	MODERN SPECIES	576	HNRNPUL2 (ENSDNOG00000006508) #7	GNG3 (ENSDNOG00000006502) #9	BSCL2 (ENSDNOG00000045976) #8	UBXN1 (ENSDNOG00000002776) #10	UQCC3 (ENSDNOG00000002774) #11	ENSDNOG00000002773	CSKMT (ENSDNOG00000036002) #12	C11orf98 (ENSDNOG00000035199) #13	INTS5 (ENSDNOG00000047221) #14	GANAB (ENSDNOG00000016317) #15	ROM1 (ENSDNOG00000034552) #17	B3GAT3 (ENSDNOG00000046900) #16	EML3 (ENSDNOG00000034127) #18	MTA2 (ENSDNOG00000016309) #19	TUT1 (ENSDNOG00000038908) #20	AHNAK (ENSDNOG00000045064) #22	ENSDNOG00000017286 #24
Afrotheria	ANCESTRAL SPECIES	9	ENSGT01100000263497.B #9	ENSGT00390000011639.d #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Tenrec	MODERN SPECIES	2342																ENSETEG00000019316 #22
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT01100000263497.B #9	ENSGT00390000011639.d #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192
Hyrax	MODERN SPECIES	1903														TUT1 (ENSPCAG00000002956) #20	EEF1G (ENSPCAG00000002886) #21	ENSPCAG00000002832 #22
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a ##33	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Opossum	MODERN SPECIES	4	ENSMODG00000005789	ZBTB3 (ENSMODG00000007952)	TTC9C (ENSMODG00000007947)	GNG3 (ENSMODG00000007929) #9	HNRNPUL2 (ENSMODG00000007941) #7	BSCL2 (ENSMODG00000007922) #8	LRRN4CL (ENSMODG00000007887)	INTS5 (ENSMODG00000007879) #14	GANAB (ENSMODG00000007869) #15	B3GAT3 (ENSMODG00000007801) #16	ENSMODG00000007785 #17	EML3 (ENSMODG00000007770) #18	TUT1 (ENSMODG00000007710) #20	ENSMODG00000007691 #21	ENSMODG00000043184 ##22	ENSMODG00000007627 #22	ASRGL1 (ENSMODG00000007616) #24	ENSMODG00000045936	INCENP (ENSMODG00000007601) #32	ENSMODG00000007582 ##33	FADS3 (ENSMODG00000007513) #36	ENSMODG00000007494 ##36	LRRC10B (ENSMODG00000020369)	ENSMODG00000049526	ENSMODG00000020368	ENSMODG00000020366	CPSF7 (ENSMODG00000020364)	ENSMODG00000020362	TMEM138 (ENSMODG00000020360)	CYB561A3 (ENSMODG00000020358)	TKFC (ENSMODG00000020356)
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a	ENSGT00390000003127
Tasmanian devil	MODERN SPECIES	5	POLR2G (ENSSHAG00000006006)	ENSSHAG00000005891	ZBTB3 (ENSSHAG00000029780)	HNRNPUL2 (ENSSHAG00000005445) #7	GNG3 (ENSSHAG00000031455) #9	UBXN1 (ENSSHAG00000029413) #10	ENSSHAG00000004657 #14	UQCC3 (ENSSHAG00000029400) #11	CSKMT (ENSSHAG00000026048) #12	GANAB (ENSSHAG00000004416) #15	B3GAT3 (ENSSHAG00000004158) #16	EML3 (ENSSHAG00000003927) #18	TUT1 (ENSSHAG00000032323) #20	MTA2 (ENSSHAG00000003368) #19	EEF1G (ENSSHAG00000003032) #21	AHNAK (ENSSHAG00000027365) #22	ASRGL1 (ENSSHAG00000031675) #24	INCENP (ENSSHAG00000003794) #32	FTH1 (ENSSHAG00000026937) ##33	ENSSHAG00000023427 #34	ENSSHAG00000027266 #35	FADS3 (ENSSHAG00000007319) #36	FADS2 (ENSSHAG00000020917) ##36	FADS1 (ENSSHAG00000031846) ##36	FEN1 (ENSSHAG00000003713)	ENSSHAG00000003063	ENSSHAG00000002443	DAGLA (ENSSHAG00000024828)	SYT7 (ENSSHAG00000012521)	PPP1R32 (ENSSHAG00000012268)	ENSSHAG00000012058
Diprotodontia	ANCESTRAL SPECIES	26	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a	ENSGT00390000003127
Wallaby	MODERN SPECIES	3229																ENSMEUG00000014258 #22
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a	ENSGT00390000003127
koala	MODERN SPECIES	179	ENSPCIG00000015262 #8	ENSPCIG00000015265	UBXN1 (ENSPCIG00000015272) #10	ENSPCIG00000015380 #11	ENSPCIG00000033746	ENSPCIG00000015386 #13	CSKMT (ENSPCIG00000015383) #12	INTS5 (ENSPCIG00000015391) #14	GANAB (ENSPCIG00000015399) #15	B3GAT3 (ENSPCIG00000015411) #16	ROM1 (ENSPCIG00000015429) #17	EML3 (ENSPCIG00000015431) #18	MTA2 (ENSPCIG00000015521) #19	TUT1 (ENSPCIG00000017805) #20	EEF1G (ENSPCIG00000017806) #21	ENSPCIG00000003373 #22	ENSPCIG00000003378 ##22	ASRGL1 (ENSPCIG00000017813) #24	INCENP (ENSPCIG00000017818) #32	ENSPCIG00000035145 ##33	ENSPCIG00000033063 #34	RAB3IL1 (ENSPCIG00000036371) #35	FADS3 (ENSPCIG00000017847) #36	FADS2 (ENSPCIG00000017850) ##36	FADS1 (ENSPCIG00000009947) ##36	FEN1 (ENSPCIG00000010422)	TMEM258 (ENSPCIG00000010423)	MYRF (ENSPCIG00000010426)	DAGLA (ENSPCIG00000020645)	SYT7 (ENSPCIG00000013322)	LRRC10B (ENSPCIG00000013347)
Common wonbat	MODERN SPECIES	901	ENSVURG00010001984	ENSVURG00010001988	UBXN1 (ENSVURG00010002011) #10	ENSVURG00010002083 #11	CSKMT (ENSVURG00010002090) #12	ENSVURG00010002105 #13	INTS5 (ENSVURG00010002114) #14	GANAB (ENSVURG00010002150) #15	B3GAT3 (ENSVURG00010002260) #16	ROM1 (ENSVURG00010002269) #17	EML3 (ENSVURG00010002281) #18	MTA2 (ENSVURG00010002299) #19	TUT1 (ENSVURG00010002331) #20	EEF1G (ENSVURG00010002339) #21	ENSVURG00010002356 ##22	ENSVURG00010002376 #22	ASRGL1 (ENSVURG00010002440) #24	INCENP (ENSVURG00010002477) #32	ENSVURG00010002790 ##33	ENSVURG00010002810 #34	RAB3IL1 (ENSVURG00010002828) #35	FADS3 (ENSVURG00010002868) #36	FADS2 (ENSVURG00010002917) ##36	FADS1 (ENSVURG00010002983) ##36	FEN1 (ENSVURG00010002995)	TMEM258 (ENSVURG00010003004)	MYRF (ENSVURG00010003029)	DAGLA (ENSVURG00010003069)	SYT7 (ENSVURG00010003104)	LRRC10B (ENSVURG00010003134)	PPP1R32 (ENSVURG00010003144)
Platypus	MODERN SPECIES	14	TTC9C (ENSOANG00000042865)	ENSOANG00000040832 #8	GNG3 (ENSOANG00000039522) #9	LRRN4CL (ENSOANG00000001564)	UBXN1 (ENSOANG00000001565) #10	ENSOANG00000047873	ENSOANG00000036660 #12	C11orf98 (ENSOANG00000044590) #13	INTS5 (ENSOANG00000042076) #14	GANAB (ENSOANG00000040770) #15	ENSOANG00000005564 #16	EML3 (ENSOANG00000011033) #18	MTA2 (ENSOANG00000011032) #19	TUT1 (ENSOANG00000012458) #20	EEF1G (ENSOANG00000012459) #21	ENSOANG00000051157 #22	ENSOANG00000022312	ASRGL1 (ENSOANG00000014197) #24	ENSOANG00000032225 #32	ENSOANG00000012401 ##33	ENSOANG00000037099 #34	RAB3IL1 (ENSOANG00000005198) #35	FADS3 (ENSOANG00000004111) #36	FADS2 (ENSOANG00000037735) ##36	FADS1 (ENSOANG00000046623) ##36	FEN1 (ENSOANG00000041443)	TMEM258 (ENSOANG00000022139)	MYRF (ENSOANG00000003410)	DAGLA (ENSOANG00000022487)	SYT7 (ENSOANG00000039173)	LRRC10B (ENSOANG00000001737)
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Theria	ANCESTRAL SPECIES	8	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a ##33	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Diprotodontia	ANCESTRAL SPECIES	26	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Common wonbat	MODERN SPECIES	901	GNG3 (ENSVURG00010001979) #9	ENSVURG00010001984	ENSVURG00010001988	UBXN1 (ENSVURG00010002011) #10	ENSVURG00010002083 #11	CSKMT (ENSVURG00010002090) #12	ENSVURG00010002105 #13	INTS5 (ENSVURG00010002114) #14	GANAB (ENSVURG00010002150) #15	B3GAT3 (ENSVURG00010002260) #16	ROM1 (ENSVURG00010002269) #17	EML3 (ENSVURG00010002281) #18	MTA2 (ENSVURG00010002299) #19	TUT1 (ENSVURG00010002331) #20	EEF1G (ENSVURG00010002339) #21	ENSVURG00010002356 ##22	ENSVURG00010002376 #22	ASRGL1 (ENSVURG00010002440) #24	INCENP (ENSVURG00010002477) #32	ENSVURG00010002790 ##33	ENSVURG00010002810 #34	RAB3IL1 (ENSVURG00010002828) #35	FADS3 (ENSVURG00010002868) #36	FADS2 (ENSVURG00010002917) ##36	FADS1 (ENSVURG00010002983) ##36	FEN1 (ENSVURG00010002995)	TMEM258 (ENSVURG00010003004)	MYRF (ENSVURG00010003029)	DAGLA (ENSVURG00010003069)	SYT7 (ENSVURG00010003104)	LRRC10B (ENSVURG00010003134)
koala	MODERN SPECIES	179	ENSPCIG00000015265	UBXN1 (ENSPCIG00000015272) #10	ENSPCIG00000015380 #11	ENSPCIG00000033746	ENSPCIG00000015386 #13	CSKMT (ENSPCIG00000015383) #12	INTS5 (ENSPCIG00000015391) #14	GANAB (ENSPCIG00000015399) #15	B3GAT3 (ENSPCIG00000015411) #16	ROM1 (ENSPCIG00000015429) #17	EML3 (ENSPCIG00000015431) #18	MTA2 (ENSPCIG00000015521) #19	TUT1 (ENSPCIG00000017805) #20	EEF1G (ENSPCIG00000017806) #21	ENSPCIG00000003373 #22	ENSPCIG00000003378 ##22	ASRGL1 (ENSPCIG00000017813) #24	INCENP (ENSPCIG00000017818) #32	ENSPCIG00000035145 ##33	ENSPCIG00000033063 #34	RAB3IL1 (ENSPCIG00000036371) #35	FADS3 (ENSPCIG00000017847) #36	FADS2 (ENSPCIG00000017850) ##36	FADS1 (ENSPCIG00000009947) ##36	FEN1 (ENSPCIG00000010422)	TMEM258 (ENSPCIG00000010423)	MYRF (ENSPCIG00000010426)	DAGLA (ENSPCIG00000020645)	SYT7 (ENSPCIG00000013322)	LRRC10B (ENSPCIG00000013347)	PPP1R32 (ENSPCIG00000013351)
Opossum	MODERN SPECIES	4	ENSMODG00000040142	ENSMODG00000005789	ZBTB3 (ENSMODG00000007952)	TTC9C (ENSMODG00000007947)	GNG3 (ENSMODG00000007929) #9	HNRNPUL2 (ENSMODG00000007941) #7	BSCL2 (ENSMODG00000007922) #8	LRRN4CL (ENSMODG00000007887)	INTS5 (ENSMODG00000007879) #14	GANAB (ENSMODG00000007869) #15	B3GAT3 (ENSMODG00000007801) #16	ENSMODG00000007785 #17	EML3 (ENSMODG00000007770) #18	TUT1 (ENSMODG00000007710) #20	ENSMODG00000007691 #21	ENSMODG00000043184 ##22	ENSMODG00000007627 #22	ASRGL1 (ENSMODG00000007616) #24	ENSMODG00000045936	INCENP (ENSMODG00000007601) #32	ENSMODG00000007582 ##33	FADS3 (ENSMODG00000007513) #36	ENSMODG00000007494 ##36	LRRC10B (ENSMODG00000020369)	ENSMODG00000049526	ENSMODG00000020368	ENSMODG00000020366	CPSF7 (ENSMODG00000020364)	ENSMODG00000020362	TMEM138 (ENSMODG00000020360)	CYB561A3 (ENSMODG00000020358)
Eutheria	ANCESTRAL SPECIES	3	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089
Atlantogenata	ANCESTRAL SPECIES	17	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866 #29	ENSGT00390000013802 #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192
Afrotheria	ANCESTRAL SPECIES	9	ENSGT00390000011639.d #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180	ENSGT00940000155040.a
Afrotheria_a	ANCESTRAL SPECIES	9	ENSGT00390000011639.d #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Elephant	MODERN SPECIES	532	POLR2G (ENSLAFG00000004354)	TTC9C (ENSLAFG00000011732)	HNRNPUL2 (ENSLAFG00000005377) #7	GNG3 (ENSLAFG00000005381) #9	BSCL2 (ENSLAFG00000030634) #8	UBXN1 (ENSLAFG00000021809) #10	UQCC3 (ENSLAFG00000013152) #11	C11orf98 (ENSLAFG00000013149) #13	INTS5 (ENSLAFG00000005382) #14	GANAB (ENSLAFG00000005386) #15	B3GAT3 (ENSLAFG00000009944) #16	ROM1 (ENSLAFG00000009942) #17	MTA2 (ENSLAFG00000027248) #19	TUT1 (ENSLAFG00000003340) #20	EEF1G (ENSLAFG00000003339) #21	ENSLAFG00000029676 ##22	SCGB1A1 (ENSLAFG00000027694)	ASRGL1 (ENSLAFG00000018231) #24	ENSLAFG00000016560 #29	ENSLAFG00000023098 #29	ENSLAFG00000027028 #32	ENSLAFG00000006290 #32	ENSLAFG00000004824 ##33	BEST1 (ENSLAFG00000004818) #34	RAB3IL1 (ENSLAFG00000004815) #35	FADS3 (ENSLAFG00000020716) #36	FADS2 (ENSLAFG00000004813) ##36	FADS1 (ENSLAFG00000031402) ##36	ENSLAFG00000032349	TMEM258 (ENSLAFG00000006503)	MYRF (ENSLAFG00000004162)
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Suina	ANCESTRAL SPECIES	14	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.a.c.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Chacoan peccary	MODERN SPECIES	920	BSCL2 (ENSCWAG00000018615) #8	GNG3 (ENSCWAG00000018653) #9	LRRN4CL (ENSCWAG00000018681)	UBXN1 (ENSCWAG00000018701) #10	UQCC3 (ENSCWAG00000018794) #11	CSKMT (ENSCWAG00000018813) #12	C11orf98 (ENSCWAG00000018837) #13	INTS5 (ENSCWAG00000018861) #14	GANAB (ENSCWAG00000018894) #15	B3GAT3 (ENSCWAG00000019113) #16	ROM1 (ENSCWAG00000019159) #17	EML3 (ENSCWAG00000019185) #18	MTA2 (ENSCWAG00000019233) #19	TUT1 (ENSCWAG00000019273) #20	EEF1G (ENSCWAG00000019299) #21	ENSCWAG00000019329 ##22	ENSCWAG00000019398 #22	SCGB1A1 (ENSCWAG00000019506)	ASRGL1 (ENSCWAG00000019530) #24	ENSCWAG00000019557 #28	ENSCWAG00000019575 ##33	BEST1 (ENSCWAG00000019634) #34	RAB3IL1 (ENSCWAG00000019675) #35	FADS3 (ENSCWAG00000019817) #36	FADS2 (ENSCWAG00000019902) ##36	ENSCWAG00000019984 ##36	ENSCWAG00000020002	FEN1 (ENSCWAG00000020017)	ENSCWAG00000020024	MYRF (ENSCWAG00000004266)
Pig	MODERN SPECIES	10	HNRNPUL2 (ENSSSCG00000028542) #7	BSCL2 (ENSSSCG00000020823) #8	ENSSSCG00000032197 #9	UBXN1 (ENSSSCG00000023110) #10	UQCC3 (ENSSSCG00000038370) #11	CSKMT (ENSSSCG00000027847) #12	C11orf98 (ENSSSCG00000058339) #13	INTS5 (ENSSSCG00000028275) #14	GANAB (ENSSSCG00000030653) #15	B3GAT3 (ENSSSCG00000020809) #16	ROM1 (ENSSSCG00000033054) #17	EML3 (ENSSSCG00000013061) #18	MTA2 (ENSSSCG00000013062) #19	TUT1 (ENSSSCG00000013063) #20	ENSSSCG00000013064 #21	ENSSSCG00000036669 ##22	ENSSSCG00000033010 #22	ENSSSCG00000055375 #22	SCGB1A1 (ENSSSCG00000013060)	ASRGL1 (ENSSSCG00000013065) #24	PHEROC (ENSSSCG00000013067) #28	SCGB1D1 (ENSSSCG00000013068) #29	INCENP (ENSSSCG00000013066) #32	ENSSSCG00000014540 ##33	BEST1 (ENSSSCG00000023090) #34	RAB3IL1 (ENSSSCG00000013074) #35	FADS3 (ENSSSCG00000013073) #36	FADS2 (ENSSSCG00000013072) ##36	FADS1 (ENSSSCG00000024015) ##36	FEN1 (ENSSSCG00000063433)	TMEM258 (ENSSSCG00000027538)
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Camelidae	ANCESTRAL SPECIES	55	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Arabian camel	MODERN SPECIES	1	GNG3 (ENSCDRG00005005252) #9	BSCL2 (ENSCDRG00005005265) #8	LRRN4CL (ENSCDRG00005005348)	UBXN1 (ENSCDRG00005005366) #10	UQCC3 (ENSCDRG00005005440) #11	LBHD1 (ENSCDRG00005005473)	CSKMT (ENSCDRG00005005533) #12	INTS5 (ENSCDRG00005005552) #14	GANAB (ENSCDRG00005005585) #15	B3GAT3 (ENSCDRG00005005790) #16	ROM1 (ENSCDRG00005005805) #17	EML3 (ENSCDRG00005005818) #18	MTA2 (ENSCDRG00005005973) #19	TUT1 (ENSCDRG00005006030) #20	EEF1G (ENSCDRG00005006080) #21	ENSCDRG00005006109 ##22	ENSCDRG00005006152 #22	SCGB1A1 (ENSCDRG00005006201)	ASRGL1 (ENSCDRG00005006211) #24	ENSCDRG00005006247 #28	ENSCDRG00005006269 #22	ENSCDRG00005006356 #28	ENSCDRG00005006418 #28	ENSCDRG00005006462 #28	ENSCDRG00005006491 #29	INCENP (ENSCDRG00005006531) #32	ENSCDRG00005006575 ##33	BEST1 (ENSCDRG00005006707) #34	RAB3IL1 (ENSCDRG00005006782) #35	FADS2 (ENSCDRG00005007121) ##36	FADS1 (ENSCDRG00005007329) ##36
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Pecora	ANCESTRAL SPECIES	13	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b
Percora_a	ANCESTRAL SPECIES	16	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Bovidae	ANCESTRAL SPECIES	16	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b
Bovinae	ANCESTRAL SPECIES	24	ENSGT00940000161805.p	ENSGT00940000160376 #7	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b
Bos	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Bos_a	ANCESTRAL SPECIES	50	ENSGT01000000214430.b	ENSGT01050000244898.a.a.a.b	ENSGT00940000165347	ENSGT00940000158840	ENSGT00940000161278	ENSGT00390000007109	ENSGT00550000074944	ENSGT00390000017010	ENSGT00550000074873.bb.b	ENSGT00390000013920	ENSGT00390000017601	ENSGT00940000156823.e	ENSGT00940000160640	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000162423	ENSGT00950000182991.B.y	ENSGT01000000214430.a.a.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.b.b.a.a	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.b	ENSGT01000000214430.a.a.a.a.a.a.b.l.b.b.a.a.a.b.a
Wild yak	MODERN SPECIES	1714	BSCL2 (ENSBMUG00000023406) #8	UBXN1 (ENSBMUG00000023388) #10	UQCC3 (ENSBMUG00000023373) #11	CSKMT (ENSBMUG00000023360) #12	ENSBMUG00000023348 #13	INTS5 (ENSBMUG00000023343) #14	GANAB (ENSBMUG00000023315) #15	B3GAT3 (ENSBMUG00000023252) #16	ROM1 (ENSBMUG00000023222) #17	EML3 (ENSBMUG00000023212) #18	ENSBMUG00000023148 #19	ENSBMUG00000023138 #19	TUT1 (ENSBMUG00000023128) #20	EEF1G (ENSBMUG00000023113) #21	ENSBMUG00000023096 #22	ENSBMUG00000023076 ##22
American bison	MODERN SPECIES	3248	GNG3 (ENSBBBG00000019496) #9	BSCL2 (ENSBBBG00000005208) #8	LRRN4CL (ENSBBBG00000019428)	UBXN1 (ENSBBBG00000009187) #10	UQCC3 (ENSBBBG00000019369) #11	LBHD1 (ENSBBBG00000019358)	CSKMT (ENSBBBG00000007511) #12	INTS5 (ENSBBBG00000005016) #14	GANAB (ENSBBBG00000019296) #15	B3GAT3 (ENSBBBG00000004913) #16	ROM1 (ENSBBBG00000019099) #17	EML3 (ENSBBBG00000019090) #18	MTA2 (ENSBBBG00000019072) #19	TUT1 (ENSBBBG00000019032) #20	EEF1G (ENSBBBG00000019015) #21	ENSBBBG00000018998 ##22	ENSBBBG00000004835 #22	ENSBBBG00000018961	ASRGL1 (ENSBBBG00000004812) #24	ENSBBBG00000018946 #28	ENSBBBG00000004805 #29	INCENP (ENSBBBG00000018936) #32	ENSBBBG00000018919 ##33	BEST1 (ENSBBBG00000004787) #34	RAB3IL1 (ENSBBBG00000018902) #35	FADS3 (ENSBBBG00000018899) #36	ENSBBBG00000004767 ##36	FADS1 (ENSBBBG00000018803) ##36	FEN1 (ENSBBBG00000008945)	ENSBBBG00000004696	ENSBBBG00000009148
Caprinae	ANCESTRAL SPECIES	20	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.a.b.n.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.e.b	ENSGT00530000063626.a
Rambouillet Sheep	MODERN SPECIES	13	GNG3 (ENSOARG00020021111) #9	BSCL2 (ENSOARG00020021030) #8	LRRN4CL (ENSOARG00020021003)	UBXN1 (ENSOARG00020020882) #10	UQCC3 (ENSOARG00020020837) #11	CSKMT (ENSOARG00020020799) #12	C11orf98 (ENSOARG00020020766) #13	INTS5 (ENSOARG00020020736) #14	GANAB (ENSOARG00020019614) #15	B3GAT3 (ENSOARG00020019536) #16	ROM1 (ENSOARG00020019491) #17	EML3 (ENSOARG00020019331) #18	MTA2 (ENSOARG00020019166) #19	TUT1 (ENSOARG00020019099) #20	EEF1G (ENSOARG00020019042) #21	ENSOARG00020018899 ##22	SCGB1A1 (ENSOARG00020018859)	ASRGL1 (ENSOARG00020018816) #24	ENSOARG00020018768 #28	ENSOARG00020018723 #29	INCENP (ENSOARG00020018586) #32	FTH1 (ENSOARG00020018402) ##33	BEST1 (ENSOARG00020018322) #34	RAB3IL1 (ENSOARG00020017922) #35	FADS3 (ENSOARG00020017693) #36	ENSOARG00020017431 ##36	FADS1 (ENSOARG00020017320) ##36	ENSOARG00020017287	FEN1 (ENSOARG00020017260)	ENSOARG00020017205	MYRF (ENSOARG00020016571)
Siberian musk deer	MODERN SPECIES	1224	BSCL2 (ENSMMSG00000012721) #8	ENSMMSG00000012801 #9	LRRN4CL (ENSMMSG00000012817)	UBXN1 (ENSMMSG00000012852) #10	UQCC3 (ENSMMSG00000012897) #11	LBHD1 (ENSMMSG00000012923)	CSKMT (ENSMMSG00000012987) #12	INTS5 (ENSMMSG00000013012) #14	GANAB (ENSMMSG00000013077) #15	B3GAT3 (ENSMMSG00000013309) #16	ENSMMSG00000013341 #17	EML3 (ENSMMSG00000013365) #18	MTA2 (ENSMMSG00000013445) #19	TUT1 (ENSMMSG00000013495) #20	EEF1G (ENSMMSG00000013530) #21	ENSMMSG00000013555 ##22	ENSMMSG00000013596 #22	SCGB1A1 (ENSMMSG00000013623)	ENSMMSG00000013643 #24	ENSMMSG00000013664 #28	ENSMMSG00000013681 #29	INCENP (ENSMMSG00000013713) #32	ENSMMSG00000013740 ##33	BEST1 (ENSMMSG00000013766) #34	RAB3IL1 (ENSMMSG00000013829) #35	FADS3 (ENSMMSG00000013946) #36	ENSMMSG00000014017 ##36	FADS1 (ENSMMSG00000014104) ##36	ENSMMSG00000014149	FEN1 (ENSMMSG00000014163)	ENSMMSG00000014177
Yarkand deer	MODERN SPECIES	11	BSCL2 (ENSCHYG00000017544) #8	LRRN4CL (ENSCHYG00000017512)	UBXN1 (ENSCHYG00000017331) #10	UQCC3 (ENSCHYG00000017276) #11	LBHD1 (ENSCHYG00000017004)	CSKMT (ENSCHYG00000016962) #12	INTS5 (ENSCHYG00000016919) #14	GANAB (ENSCHYG00000016139) #15	B3GAT3 (ENSCHYG00000015841) #16	ROM1 (ENSCHYG00000015732) #17	EML3 (ENSCHYG00000015378) #18	MTA2 (ENSCHYG00000015186) #19	TUT1 (ENSCHYG00000015098) #20	EEF1G (ENSCHYG00000014986) #21	ENSCHYG00000014832 #22	ENSCHYG00000014697 ##22	ENSCHYG00000014657	ASRGL1 (ENSCHYG00000014526) #24	ENSCHYG00000014496 #28	ENSCHYG00000014447 #29	INCENP (ENSCHYG00000014341) #32	ENSCHYG00000014297	ENSCHYG00000014166 ##33	BEST1 (ENSCHYG00000014024) #34	RAB3IL1 (ENSCHYG00000013498) #35	FADS3 (ENSCHYG00000013278) #36	ENSCHYG00000012672 ##36	FADS1 (ENSCHYG00000012487) ##36	ENSCHYG00000012454	FEN1 (ENSCHYG00000012431)	ENSCHYG00000012385
Cetacea	ANCESTRAL SPECIES	4	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.b.n.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Odontoceti	ANCESTRAL SPECIES	4	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.a.b ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Vaquita	MODERN SPECIES	19	GNG3 (ENSPSNG00000019000) #9	BSCL2 (ENSPSNG00000018928) #8	LRRN4CL (ENSPSNG00000018896)	UBXN1 (ENSPSNG00000018815) #10	ENSPSNG00000018693 #11	CSKMT (ENSPSNG00000018651) #12	LBHD1 (ENSPSNG00000018488)	INTS5 (ENSPSNG00000018449) #14	GANAB (ENSPSNG00000018146) #15	B3GAT3 (ENSPSNG00000018034) #16	ROM1 (ENSPSNG00000017989) #17	EML3 (ENSPSNG00000017777) #18	MTA2 (ENSPSNG00000017617) #19	TUT1 (ENSPSNG00000017538) #20	EEF1G (ENSPSNG00000017454) #21	ENSPSNG00000017355 ##22	ENSPSNG00000017310	ASRGL1 (ENSPSNG00000017251) #24	INCENP (ENSPSNG00000017213) #32	ENSPSNG00000017157	ENSPSNG00000017070 #34	RAB3IL1 (ENSPSNG00000016838) #35	FADS3 (ENSPSNG00000016702) #36	FADS2 (ENSPSNG00000016437) ##36	FADS1 (ENSPSNG00000016302) ##36	ENSPSNG00000016241	FEN1 (ENSPSNG00000016213)	TMEM258 (ENSPSNG00000016151)	MYRF (ENSPSNG00000015696)	DAGLA (ENSPSNG00000015388)	SYT7 (ENSPSNG00000014330)
Monodontidae	ANCESTRAL SPECIES	2	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00390000009588.nb	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Beluga whale	MODERN SPECIES	7	GNG3 (ENSDLEG00000018479) #9	BSCL2 (ENSDLEG00000018487) #8	LRRN4CL (ENSDLEG00000018503)	UBXN1 (ENSDLEG00000018521) #10	UQCC3 (ENSDLEG00000018687) #11	METTL12 (ENSDLEG00000018693) #12	CUNH11orf98 (ENSDLEG00000018700) #13	INTS5 (ENSDLEG00000018703) #14	GANAB (ENSDLEG00000018708) #15	B3GAT3 (ENSDLEG00000018722) #16	ROM1 (ENSDLEG00000018727) #17	EML3 (ENSDLEG00000018806) #18	MTA2 (ENSDLEG00000019734) #19	TUT1 (ENSDLEG00000019807) #20	EEF1G (ENSDLEG00000019824) #21	ENSDLEG00000019831 ##22	ENSDLEG00000000042 #22	ENSDLEG00000000054	ASRGL1 (ENSDLEG00000000069) #24	INCENP (ENSDLEG00000000094) #32	ENSDLEG00000000149	FTH1 (ENSDLEG00000000166) ##33	ENSDLEG00000000215 #34	RAB3IL1 (ENSDLEG00000000259) #35	FADS3 (ENSDLEG00000000318) #36	FADS2 (ENSDLEG00000000450) ##36	ENSDLEG00000000465 ##36	ENSDLEG00000000478	FEN1 (ENSDLEG00000000484)	ENSDLEG00000000496	MYRF (ENSDLEG00000000555)
Sperm whale	MODERN SPECIES	41	GNG3 (ENSPCTG00005016574) #9	BSCL2 (ENSPCTG00005016458) #8	LRRN4CL (ENSPCTG00005016435)	UBXN1 (ENSPCTG00005016314) #10	UQCC3 (ENSPCTG00005016275) #11	CSKMT (ENSPCTG00005016237) #12	CUNH11orf98 (ENSPCTG00005016037)	INTS5 (ENSPCTG00005016002) #14	GANAB (ENSPCTG00005015548) #15	B3GAT3 (ENSPCTG00005015447) #16	ROM1 (ENSPCTG00005015418) #17	EML3 (ENSPCTG00005014675) #18	MTA2 (ENSPCTG00005014433) #19	TUT1 (ENSPCTG00005014312) #20	EEF1G (ENSPCTG00005014278) #21	ENSPCTG00005014260 ##22
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Carnivora	ANCESTRAL SPECIES	7	ENSGT01100000263497.B.c.a #9	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Caniformia	ANCESTRAL SPECIES	21	ENSGT01100000263497.B.c.a #9	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802 #28	ENSGT00530000063866.j.b #29	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Canidae	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Canis_lupus	ANCESTRAL SPECIES	7	ENSGT01100000263497.B.c.a #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.j.b #29	ENSGT00390000013802.m #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00520000061410	ENSGT00390000010089.f
Dingo	MODERN SPECIES	36	GNG3 (ENSCAFG00020013115) #9	BSCL2 (ENSCAFG00020013107) #8	LRRN4CL (ENSCAFG00020013104)	UBXN1 (ENSCAFG00020013102) #10	UQCC3 (ENSCAFG00020013100) #11	CSKMT (ENSCAFG00020013099) #12	C11orf98 (ENSCAFG00020013094) #13	INTS5 (ENSCAFG00020013093) #14	GANAB (ENSCAFG00020013079) #15	B3GAT3 (ENSCAFG00020013076) #16	ROM1 (ENSCAFG00020013070) #17	EML3 (ENSCAFG00020013050) #18	MTA2 (ENSCAFG00020013043) #19	TUT1 (ENSCAFG00020013039) #20	EEF1G (ENSCAFG00020013031) #21	ENSCAFG00020013019 ##22	ENSCAFG00020013011	ASRGL1 (ENSCAFG00020013005) #24	ENSCAFG00020012998 #29	ENSCAFG00020012996 #28	ENSCAFG00020012994 #28	ENSCAFG00020012987 #29	INCENP (ENSCAFG00020012970) #32	ENSCAFG00020012965 ##33	BEST1 (ENSCAFG00020012953) #34	RAB3IL1 (ENSCAFG00020012943) #35	FADS3 (ENSCAFG00020012916) #36	FADS2 (ENSCAFG00020012907) ##36	FADS1 (ENSCAFG00020012860) ##36	ENSCAFG00020012857	ENSCAFG00020012853
Caniformia_b	ANCESTRAL SPECIES	19	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
Ursidae	ANCESTRAL SPECIES	2	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457.cb #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Giant Panda	MODERN SPECIES	7	GNG3 (ENSAMEG00000006462) #9	BSCL2 (ENSAMEG00000006466) #8	UBXN1 (ENSAMEG00000006490) #10	UQCC3 (ENSAMEG00000020260) #11	CSKMT (ENSAMEG00000006516) #12	LBHD1 (ENSAMEG00000006512)	INTS5 (ENSAMEG00000006517) #14	GANAB (ENSAMEG00000006520) #15	B3GAT3 (ENSAMEG00000006637) #16	ROM1 (ENSAMEG00000006650) #17	EML3 (ENSAMEG00000006659) #18	MTA2 (ENSAMEG00000006678) #19	TUT1 (ENSAMEG00000006723) #20	ENSAMEG00000006745 #21	ENSAMEG00000025702 #22	ENSAMEG00000025259 ##22	ENSAMEG00000006786	ASRGL1 (ENSAMEG00000006791) #24	ENSAMEG00000025507 #29	ENSAMEG00000030118 #28	INCENP (ENSAMEG00000016838) #32	ENSAMEG00000016831 ##33	BEST1 (ENSAMEG00000016808) #34	RAB3IL1 (ENSAMEG00000016803) #35	FADS3 (ENSAMEG00000016772) #36	ENSAMEG00000016725 ##36	FADS1 (ENSAMEG00000016696) ##36	ENSAMEG00000027333	ENSAMEG00000016694	MYRF (ENSAMEG00000016669)	DAGLA (ENSAMEG00000016637)
Mustelinae	ANCESTRAL SPECIES	3	ENSGT00940000160376 #7	ENSGT01100000263497.B.c.b #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.i #29	ENSGT00390000013802.k #28	ENSGT00530000063866.j.b #29	ENSGT00390000013802.l #28	ENSGT00530000063866.j.a #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.d ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
American mink	MODERN SPECIES	215	HNRNPUL2 (ENSNVIG00000020754) #7	BSCL2 (ENSNVIG00000020778) #8	GBG3 (ENSNVIG00000020795) #9	LRRN4CL (ENSNVIG00000020803)	UBXN1 (ENSNVIG00000020815) #10	UQCC3 (ENSNVIG00000020874) #11	MTL12 (ENSNVIG00000020886) #12	INTS5 (ENSNVIG00000020902) #14	GANAB (ENSNVIG00000020917) #15	B3GAT3 (ENSNVIG00000020996) #16	ROM1 (ENSNVIG00000021007) #17	EML3 (ENSNVIG00000021014) #18	MTA2 (ENSNVIG00000021082) #19	TUT1 (ENSNVIG00000021132) #20	EEF1G (ENSNVIG00000021149) #21	ENSNVIG00000021179 ##22	ENSNVIG00000021198 #22	SCGB1A1 (ENSNVIG00000021208)	ASRGL1 (ENSNVIG00000021214) #24	ENSNVIG00000021239 #29	ENSNVIG00000021243 #28	ENSNVIG00000021252 #29	ENSNVIG00000021260	ENSNVIG00000021274 #29	INCENP (ENSNVIG00000021280) #32	ENSNVIG00000021327 ##33	BEST1 (ENSNVIG00000021351) #34	R3GEF (ENSNVIG00000021368) #35	FADS3 (ENSNVIG00000021398) #36	FADS2 (ENSNVIG00000021440) ##36	ENSNVIG00000021464
Felidae	ANCESTRAL SPECIES		ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Cat	MODERN SPECIES	241	LRRN4CL (ENSFCAG00000044682)	UBXN1 (ENSFCAG00000008866) #10	UQCC3 (ENSFCAG00000026508) #11	CSKMT (ENSFCAG00000019062) #12	LBHD1 (ENSFCAG00000038803)	INTS5 (ENSFCAG00000022488) #14	GANAB (ENSFCAG00000008865) #15	B3GAT3 (ENSFCAG00000008864) #16	ROM1 (ENSFCAG00000008863) #17	EML3 (ENSFCAG00000008862) #18	MTA2 (ENSFCAG00000008861) #19	TUT1 (ENSFCAG00000008859) #20	EEF1G (ENSFCAG00000008858) #21	ENSFCAG00000047570 #22	ENSFCAG00000045898 #22	ENSFCAG00000050660 ##22	SCGB1A1 (ENSFCAG00000008856)	ASRGL1 (ENSFCAG00000008855) #24	ENSFCAG00000024754 #28	ENSFCAG00000034757 #29	INCENP (ENSFCAG00000002264) #32	FTH1 (ENSFCAG00000007382) ##33	BEST1 (ENSFCAG00000050693) #34	RAB3IL1 (ENSFCAG00000007376) #35	FADS3 (ENSFCAG00000027535) #36	FADS2 (ENSFCAG00000024030) ##36	FADS1 (ENSFCAG00000013686) ##36	ENSFCAG00000035555	FEN1 (ENSFCAG00000013685)	TMEM258 (ENSFCAG00000013684)	MYRF (ENSFCAG00000013683)
Panthera	ANCESTRAL SPECIES	18	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650.a.a #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Tiger	MODERN SPECIES	369	ENSPTIG00000019130 #9	BSCL2 (ENSPTIG00000019239) #8	LRRN4CL (ENSPTIG00000000217)	UBXN1 (ENSPTIG00000008345) #10	UQCC3 (ENSPTIG00000012993) #11	CSKMT (ENSPTIG00000013521) #12	C11orf98 (ENSPTIG00000013699) #13	INTS5 (ENSPTIG00000014269) #14	GANAB (ENSPTIG00000014913) #15	B3GAT3 (ENSPTIG00000017991) #16	ROM1 (ENSPTIG00000019100) #17	EML3 (ENSPTIG00000019503) #18	MTA2 (ENSPTIG00000013509) #19	TUT1 (ENSPTIG00000017573) #20	EEF1G (ENSPTIG00000018752) #21	ENSPTIG00000019468 ##22	ENSPTIG00000002472	ASRGL1 (ENSPTIG00000005323) #24	ENSPTIG00000006814 #28	ENSPTIG00000011535 ##33	ENSPTIG00000012608 #34	RAB3IL1 (ENSPTIG00000012918) #35	FADS3 (ENSPTIG00000014191) #36	FADS2 (ENSPTIG00000015140) ##36	FADS1 (ENSPTIG00000017932) ##36	ENSPTIG00000019542	FEN1 (ENSPTIG00000001610)	TMEM258 (ENSPTIG00000020759)	ENSPTIG00000000743	DAGLA (ENSPTIG00000006114)	SYT7 (ENSPTIG00000008244)
Panthera_a	ANCESTRAL SPECIES	18	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000167720	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802 #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650.a.a #34	ENSGT00940000158650.b #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
lion	MODERN SPECIES	10	BSCL2 (ENSPLOG00000007556) #8	LRRN4CL (ENSPLOG00000009871)	UBXN1 (ENSPLOG00000009769) #10	UQCC3 (ENSPLOG00000009743) #11	CSKMT (ENSPLOG00000009731) #12	LBHD1 (ENSPLOG00000009643)	INTS5 (ENSPLOG00000009619) #14	GANAB (ENSPLOG00000009125) #15	B3GAT3 (ENSPLOG00000008977) #16	ROM1 (ENSPLOG00000008948) #17	EML3 (ENSPLOG00000008783) #18	MTA2 (ENSPLOG00000008641) #19	TUT1 (ENSPLOG00000008550) #20	EEF1G (ENSPLOG00000008495) #21	ENSPLOG00000008461 #22	ENSPLOG00000008404 ##22	ENSPLOG00000008372	ASRGL1 (ENSPLOG00000008346) #24	ENSPLOG00000008312 #28	ENSPLOG00000008289	ENSPLOG00000008201 #29	INCENP (ENSPLOG00000008155) #32	ENSPLOG00000008095 ##33	BEST1 (ENSPLOG00000007969) #34	RAB3IL1 (ENSPLOG00000007741) #35	FADS3 (ENSPLOG00000007672) #36	FADS2 (ENSPLOG00000007565) ##36	FADS1 (ENSPLOG00000007444) ##36	ENSPLOG00000007425	FEN1 (ENSPLOG00000007415)	ENSPLOG00000007399
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00530000063866 #29	ENSGT00390000013802.v.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Primates	ANCESTRAL SPECIES		ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Strepsirrhini	ANCESTRAL SPECIES	20	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Lemuriformes	ANCESTRAL SPECIES	14	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Lemuriformes_a	ANCESTRAL SPECIES	3	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Greater bamboo lemur	MODERN SPECIES	101	GNG3 (ENSPSMG00000022948) #9	BSCL2 (ENSPSMG00000022881) #8	LRRN4CL (ENSPSMG00000022803)	UBXN1 (ENSPSMG00000022794) #10	UQCC3 (ENSPSMG00000022737) #11	CSKMT (ENSPSMG00000022734) #12	LBHD1 (ENSPSMG00000022723)	INTS5 (ENSPSMG00000022709) #14	GANAB (ENSPSMG00000022613) #15	B3GAT3 (ENSPSMG00000022369) #16	ROM1 (ENSPSMG00000022362) #17	EML3 (ENSPSMG00000022351) #18	MTA2 (ENSPSMG00000022318) #19	TUT1 (ENSPSMG00000022289) #20	EEF1G (ENSPSMG00000022280) #21	ENSPSMG00000022263 ##22	SCGB1A1 (ENSPSMG00000022253)	ASRGL1 (ENSPSMG00000022249) #24	ENSPSMG00000022241 #28	ENSPSMG00000022239 #29	INCENP (ENSPSMG00000022199) #32	ENSPSMG00000022147 ##33	BEST1 (ENSPSMG00000022118) #34	RAB3IL1 (ENSPSMG00000022098) #35	FADS3 (ENSPSMG00000021967) #36	FADS2 (ENSPSMG00000021745) ##36	FADS1 (ENSPSMG00000021668) ##36	ENSPSMG00000021638	ENSPSMG00000021632	FEN1 (ENSPSMG00000021625)	TMEM258 (ENSPSMG00000021620)
Coquerels sifaka	MODERN SPECIES	124	GNG3 (ENSPCOG00000017973) #9	BSCL2 (ENSPCOG00000015043) #8	UBXN1 (ENSPCOG00000019984) #10	UQCC3 (ENSPCOG00000019522) #11	CSKMT (ENSPCOG00000016342) #12	ENSPCOG00000014134 #13	INTS5 (ENSPCOG00000023497) #14	GANAB (ENSPCOG00000014717) #15	B3GAT3 (ENSPCOG00000008969) #16	ROM1 (ENSPCOG00000027824) #17	EML3 (ENSPCOG00000015725) #18	MTA2 (ENSPCOG00000022200) #19	TUT1 (ENSPCOG00000017464) #20	EEF1G (ENSPCOG00000015966) #21	ENSPCOG00000028630 #22	ENSPCOG00000028633 ##22	SCGB1A1 (ENSPCOG00000028635)	ASRGL1 (ENSPCOG00000028628) #24	SCGB2A1 (ENSPCOG00000028625) #28
Haplorrhini	ANCESTRAL SPECIES		ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00390000013802.v.b #28	ENSGT00530000063866 #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Tarsier	MODERN SPECIES	5284																ENSTSYG00000031722 ##22	AHNAK (ENSTSYG00000032384) #22	SCGB1A1 (ENSTSYG00000013070)	ASRGL1 (ENSTSYG00000026138) #24
Simiiformes	ANCESTRAL SPECIES		ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36
Platyrrhini	ANCESTRAL SPECIES	15	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a.i #24	ENSGT00950000183045.A.a.a.j #24	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36
Cebidae	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.c.b #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a.i #24	ENSGT00950000183045.A.a.a.j #24	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36
Cebidae_a	ANCESTRAL SPECIES	18	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x.c.b #21	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a.i #24	ENSGT00390000007552.f.x.c.a #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.a.a.a.b.a.a.a.b ##33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a
Bolivian squirrel monkey	MODERN SPECIES	42	HNRNPUL2 (ENSSBOG00000026780) #7	GNG3 (ENSSBOG00000015839) #9	BSCL2 (ENSSBOG00000017621) #8	ENSSBOG00000035227 #10	UQCC3 (ENSSBOG00000032621) #11	CSKMT (ENSSBOG00000030424) #12	LBHD1 (ENSSBOG00000022501)	INTS5 (ENSSBOG00000033783) #14	GANAB (ENSSBOG00000031512) #15	B3GAT3 (ENSSBOG00000034134) #16	ROM1 (ENSSBOG00000021679) #17	EML3 (ENSSBOG00000028020) #18	MTA2 (ENSSBOG00000020111) #19	TUT1 (ENSSBOG00000003827) #20	ENSSBOG00000029342 #21	ENSSBOG00000014296 ##22	SCGB1A1 (ENSSBOG00000018756)	ASRGL1 (ENSSBOG00000014673) #24	ENSSBOG00000029423	SCGB1D4 (ENSSBOG00000025179) #25	ENSSBOG00000017764	SCGB2A2 (ENSSBOG00000028742) ##28	SCGB1D2 (ENSSBOG00000010503) #27	SCGB2A1 (ENSSBOG00000013372) #28	SCGB1D1 (ENSSBOG00000029702) #29	INCENP (ENSSBOG00000013254) #32	ENSSBOG00000015673	FTH1 (ENSSBOG00000027832) #33	BEST1 (ENSSBOG00000027813) #34	RAB3IL1 (ENSSBOG00000030643) #35	FADS3 (ENSSBOG00000014840) #36
Marmoset	MODERN SPECIES	2	BSCL2 (ENSCJAG00000018730) #8	LRRN4CL (ENSCJAG00000047970)	UBXN1 (ENSCJAG00000018751) #10	UQCC3 (ENSCJAG00000082326) #11	CSKMT (ENSCJAG00000018816) #12	LBHD1 (ENSCJAG00000018789)	ENSCJAG00000075366	INTS5 (ENSCJAG00000018821) #14	GANAB (ENSCJAG00000018826) #15	B3GAT3 (ENSCJAG00000018860) #16	ROM1 (ENSCJAG00000044995) #17	EML3 (ENSCJAG00000018884) #18	MTA2 (ENSCJAG00000018928) #19	TUT1 (ENSCJAG00000033294) #20	ENSCJAG00000018949 #21	ENSCJAG00000072475 ##22	SCGB1A1 (ENSCJAG00000019012)	ENSCJAG00000078407 #24	ENSCJAG00000055515 #24	SCGB1D4 (ENSCJAG00000019054) #25	SCGB2A2 (ENSCJAG00000019059) ##28	SCGB1D2 (ENSCJAG00000058578) #27	SCGB2A1 (ENSCJAG00000019050) #28	SCGB1D1 (ENSCJAG00000019048) #29	INCENP (ENSCJAG00000019069) #32	ENSCJAG00000047003 ##33	BEST1 (ENSCJAG00000019095) #34	RAB3IL1 (ENSCJAG00000019137) #35	ENSCJAG00000046538	FADS2 (ENSCJAG00000019168) ##36	FADS1 (ENSCJAG00000047481) ##36
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000183316
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00910000147498 #37
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.v.a ##28	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b #33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00910000147498 #37
Macaca_a	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Crab-eating macaque	MODERN SPECIES	5	BSCL2 (ENSMFAG00000031001) #8	LRRN4CL (ENSMFAG00000049892)	UBXN1 (ENSMFAG00000045415) #10	ENSMFAG00000051023	ENSMFAG00000061333	CSKMT (ENSMFAG00000032323) #12	C11orf98 (ENSMFAG00000003562) #13	INTS5 (ENSMFAG00000031212) #14	GANAB (ENSMFAG00000045211) #15	B3GAT3 (ENSMFAG00000037575) #16	ROM1 (ENSMFAG00000002310) #17	EML3 (ENSMFAG00000037614) #18	MTA2 (ENSMFAG00000041694) #19	TUT1 (ENSMFAG00000000912) #20	ENSMFAG00000007224 #21	ENSMFAG00000037659 ##22	SCGB1A1 (ENSMFAG00000043963)	ASRGL1 (ENSMFAG00000036351) #24	ENSMFAG00000060551	SCGB1D4 (ENSMFAG00000000615) #25	SCGB1D2 (ENSMFAG00000032089) #27	SCGB2A1 (ENSMFAG00000002274) #28	SCGB1D1 (ENSMFAG00000032054) #29	INCENP (ENSMFAG00000031558) #32	ENSMFAG00000047451	ENSMFAG00000007415 #33	BEST1 (ENSMFAG00000033154) #34	RAB3IL1 (ENSMFAG00000045583) #35	FADS3 (ENSMFAG00000040762) #36	ENSMFAG00000062962	FADS2 (ENSMFAG00000042844) ##36
Pig-tailed macaque	MODERN SPECIES	433	BSCL2 (ENSMNEG00000027955) #8	LRRN4CL (ENSMNEG00000008801)	UBXN1 (ENSMNEG00000023355) #10	UQCC3 (ENSMNEG00000009079) #11	CSKMT (ENSMNEG00000032750) #12	ENSMNEG00000031419 #13	INTS5 (ENSMNEG00000009187) #14	GANAB (ENSMNEG00000044710) #15	B3GAT3 (ENSMNEG00000018264) #16	ROM1 (ENSMNEG00000040388) #17	EML3 (ENSMNEG00000035836) #18	MTA2 (ENSMNEG00000041381) #19	TUT1 (ENSMNEG00000029841) #20	ENSMNEG00000044626 #21	ENSMNEG00000039903 #22	ENSMNEG00000043224 ##22	SCGB1A1 (ENSMNEG00000030793)	ASRGL1 (ENSMNEG00000044187) #24	ENSMNEG00000017421	SCGB1D4 (ENSMNEG00000029024) #25	ENSMNEG00000039066 #26	SCGB1D2 (ENSMNEG00000038358) #27	SCGB2A1 (ENSMNEG00000036574) #28	SCGB1D1 (ENSMNEG00000031707) #29	INCENP (ENSMNEG00000034022) #32	ENSMNEG00000034175	ENSMNEG00000035801 ##33	BEST1 (ENSMNEG00000032288) #34	RAB3IL1 (ENSMNEG00000041630) #35	FADS3 (ENSMNEG00000045543) #36	ENSMNEG00000016534 #37
Cercopithecinae_b	ANCESTRAL SPECIES	16	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615.o.a #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f.x #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00940000153052.c.a.a.a	ENSGT00530000063866.c.b #25	ENSGT00390000013802.v.b.c #26	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.c.a #27	ENSGT00390000013802.v.b.d #28	ENSGT00530000063866.d #29	ENSGT00730000111073 #32	ENSGT00390000011666.x.a.e.a	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Drill	MODERN SPECIES	1111	HNRNPUL2 (ENSMLEG00000033906) #7	GNG3 (ENSMLEG00000039091) #9	BSCL2 (ENSMLEG00000037535) #8	LRRN4CL (ENSMLEG00000006668)	UBXN1 (ENSMLEG00000027508) #10	UQCC3 (ENSMLEG00000042115) #11	CSKMT (ENSMLEG00000029829) #12	ENSMLEG00000024134 #13	INTS5 (ENSMLEG00000036338) #14	GANAB (ENSMLEG00000035204) #15	B3GAT3 (ENSMLEG00000032645) #16	ROM1 (ENSMLEG00000005548) #17	EML3 (ENSMLEG00000031847) #18	TUT1 (ENSMLEG00000040498) #20	EEF1G (ENSMLEG00000023252) #21	ENSMLEG00000027464 ##22	SCGB1A1 (ENSMLEG00000043598)	ASRGL1 (ENSMLEG00000043526) #24	ENSMLEG00000039578	SCGB1D4 (ENSMLEG00000033831) #25	ENSMLEG00000029127 #26	SCGB1D2 (ENSMLEG00000035930) #27	SCGB2A1 (ENSMLEG00000035453) #28	SCGB1D1 (ENSMLEG00000042430) #29	INCENP (ENSMLEG00000043817) #32	ENSMLEG00000042552 #33	BEST1 (ENSMLEG00000034408) #34	RAB3IL1 (ENSMLEG00000043733) #35	FADS3 (ENSMLEG00000043283) #36	ENSMLEG00000021942 #37	ENSMLEG00000044256
Olive baboon	MODERN SPECIES	3	GNG3 (ENSPANG00000042558) #9	BSCL2 (ENSPANG00000011406) #8	LRRN4CL (ENSPANG00000003479)	UBXN1 (ENSPANG00000005453) #10	UQCC3 (ENSPANG00000035430) #11	CSKMT (ENSPANG00000046328) #12	C11orf98 (ENSPANG00000007575) #13	ENSPANG00000040911 #14	GANAB (ENSPANG00000010909) #15	B3GAT3 (ENSPANG00000005376) #16	ROM1 (ENSPANG00000015653) #17	EML3 (ENSPANG00000012313) #18	MTA2 (ENSPANG00000005452) #19	TUT1 (ENSPANG00000010908) #20	EEF1G (ENSPANG00000003106) #21	ENSPANG00000037028 ##22	SCGB1A1 (ENSPANG00000019204)	ASRGL1 (ENSPANG00000011234) #24	SCGB2A2 (ENSPANG00000032557) ##28	SCGB1D2 (ENSPANG00000016130) #27	SCGB2A1 (ENSPANG00000046637) #28	SCGB1D1 (ENSPANG00000016660) #29	INCENP (ENSPANG00000016661) #32	ENSPANG00000032665	FTH1 (ENSPANG00000016662) ##33	BEST1 (ENSPANG00000016663) #34	RAB3IL1 (ENSPANG00000023599) #35	FADS3 (ENSPANG00000016422) #36	ENSPANG00000035579	FADS2 (ENSPANG00000015652) ##36	FADS1 (ENSPANG00000013646) ##36
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Orangutan	MODERN SPECIES	2	GNG3 (ENSPPYG00000003150) #9	BSCL2 (ENSPPYG00000038932) #8	LRRN4CL (ENSPPYG00000003152)	UBXN1 (ENSPPYG00000003153) #10	ENSPPYG00000003154 #11	LBHD1 (ENSPPYG00000003155)	CSKMT (ENSPPYG00000003156) #12	INTS5 (ENSPPYG00000003157) #14	GANAB (ENSPPYG00000003158) #15	B3GAT3 (ENSPPYG00000025907) #16	ROM1 (ENSPPYG00000003159) #17	EML3 (ENSPPYG00000003160) #18	MTA2 (ENSPPYG00000003161) #19	TUT1 (ENSPPYG00000003162) #20	EEF1G (ENSPPYG00000029434) #21	ENSPPYG00000035391 ##22	SCGB1A1 (ENSPPYG00000003165)	ASRGL1 (ENSPPYG00000003166) #24	ENSPPYG00000034057	ENSPPYG00000038729	ENSPPYG00000003168 ##28	SCGB1D2 (ENSPPYG00000003169) #27	SCGB2A1 (ENSPPYG00000003170) #28	SCGB1D1 (ENSPPYG00000025908) #29	INCENP (ENSPPYG00000003171) #32	FTH1 (ENSPPYG00000003173) ##33	BEST1 (ENSPPYG00000003174) #34	ENSPPYG00000003175 #35	FADS3 (ENSPPYG00000003176) #36	FADS2 (ENSPPYG00000003177) ##36	ENSPPYG00000033771
Gibbon	MODERN SPECIES	19	GNG3 (ENSNLEG00000004072) #9	BSCL2 (ENSNLEG00000004058) #8	LRRN4CL (ENSNLEG00000004054)	UBXN1 (ENSNLEG00000004041) #10	UQCC3 (ENSNLEG00000035136) #11	CSKMT (ENSNLEG00000004038) #12	LBHD1 (ENSNLEG00000004026)	INTS5 (ENSNLEG00000035490) #14	GANAB (ENSNLEG00000003980) #15	B3GAT3 (ENSNLEG00000003956) #16	ROM1 (ENSNLEG00000003950) #17	EML3 (ENSNLEG00000003879) #18	MTA2 (ENSNLEG00000003813) #19	TUT1 (ENSNLEG00000003780) #20	EEF1G (ENSNLEG00000003528) #21	ENSNLEG00000031821 ##22	SCGB1A1 (ENSNLEG00000003507)	ASRGL1 (ENSNLEG00000003492) #24	ENSNLEG00000030364	ENSNLEG00000003484 ##28	SCGB1D2 (ENSNLEG00000003481) #27	SCGB2A1 (ENSNLEG00000003471) #28	ENSNLEG00000003463	ENSNLEG00000028720	INCENP (ENSNLEG00000003380) #32	ENSNLEG00000003321 ##33	BEST1 (ENSNLEG00000003280) #34	RAB3IL1 (ENSNLEG00000003273) #35	ENSNLEG00000003139 #36	ENSNLEG00000031350	FADS2 (ENSNLEG00000003214) ##36
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.a ##28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Glires	ANCESTRAL SPECIES	1	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Lagomorpha	ANCESTRAL SPECIES	491																ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24
Rabbit	MODERN SPECIES	450	TTC9C (ENSOCUG00000009479)	HNRNPUL2 (ENSOCUG00000009474) #7	GNG3 (ENSOCUG00000009468) #9	BSCL2 (ENSOCUG00000026008) #8	UBXN1 (ENSOCUG00000017278) #10	UQCC3 (ENSOCUG00000017252) #11	LBHD1 (ENSOCUG00000017260)	CSKMT (ENSOCUG00000024025) #12	INTS5 (ENSOCUG00000017276) #14	ENSOCUG00000017259 #15	B3GAT3 (ENSOCUG00000017246) #16	ROM1 (ENSOCUG00000022258) #17	EML3 (ENSOCUG00000017228) #18	MTA2 (ENSOCUG00000008849) #19	TUT1 (ENSOCUG00000017215) #20	ENSOCUG00000033730 ##22	ENSOCUG00000025901 #22	ENSOCUG00000035541 #22	ASRGL1 (ENSOCUG00000005922) #24	ENSOCUG00000003577 #29	ENSOCUG00000023556 ##28	ENSOCUG00000026803 ##28	ENSOCUG00000030850 #29	ENSOCUG00000023781	ENSOCUG00000022609 #29	ENSOCUG00000032972	ENSOCUG00000000457 #29	ENSOCUG00000005200 ##28	ENSOCUG00000015682 #29	INCENP (ENSOCUG00000011258) #32	ENSOCUG00000014108 ##33
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.p ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.b.p ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Sciuridae	ANCESTRAL SPECIES	40	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b #28	ENSGT00530000063866.f.b #29	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a
Marmotini	ANCESTRAL SPECIES	6	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b.a #28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Alpin marmot	MODERN SPECIES	3	GNG3 (ENSMMMG00000002755) #9	BSCL2 (ENSMMMG00000002687) #8	LRRN4CL (ENSMMMG00000002684)	UBXN1 (ENSMMMG00000002665) #10	UQCC3 (ENSMMMG00000002655) #11	CSKMT (ENSMMMG00000002643) #12	INTS5 (ENSMMMG00000002623) #14	GANAB (ENSMMMG00000002585) #15	B3GAT3 (ENSMMMG00000002571) #16	ROM1 (ENSMMMG00000002567) #17	EML3 (ENSMMMG00000002484) #18	MTA2 (ENSMMMG00000002461) #19	TUT1 (ENSMMMG00000002433) #20	ENSMMMG00000002424 #21	ENSMMMG00000002408 #22	ENSMMMG00000002397 ##22	SCGB1A1 (ENSMMMG00000002393)	ASRGL1 (ENSMMMG00000002386) #24	ENSMMMG00000002372 #29	ENSMMMG00000002360 #28	ENSMMMG00000002256 ##33	BEST1 (ENSMMMG00000002191) #34	FADS3 (ENSMMMG00000002106) #36	FADS2 (ENSMMMG00000002075) ##36	FADS1 (ENSMMMG00000002044) ##36	ENSMMMG00000002036	FEN1 (ENSMMMG00000002027)	TMEM258 (ENSMMMG00000002020)	MYRF (ENSMMMG00000001773)	DAGLA (ENSMMMG00000001711)	SYT7 (ENSMMMG00000001508)
Marmotini_b	ANCESTRAL SPECIES	21	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.v.b.a #28	ENSGT00530000063866.f.b #29	ENSGT00390000013802.v.b.b #28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00950000182841.b.a.a.b.b.o.b ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410
Squirrel	MODERN SPECIES	181	HNRNPUL2 (ENSSTOG00000004327) #7	GNG3 (ENSSTOG00000001052) #9	BSCL2 (ENSSTOG00000024362) #8	LRRN4CL (ENSSTOG00000022001)	UBXN1 (ENSSTOG00000004310) #10	UQCC3 (ENSSTOG00000029463) #11	C11orf98 (ENSSTOG00000025290) #13	INTS5 (ENSSTOG00000019630) #14	GANAB (ENSSTOG00000002934) #15	B3GAT3 (ENSSTOG00000002928) #16	ROM1 (ENSSTOG00000023639) #17	EML3 (ENSSTOG00000002908) #18	MTA2 (ENSSTOG00000002883) #19	TUT1 (ENSSTOG00000002859) #20	ENSSTOG00000002851 #21	ENSSTOG00000030073 ##22	SCGB1A1 (ENSSTOG00000010085)	ASRGL1 (ENSSTOG00000010064) #24	SCGB2A1 (ENSSTOG00000006184) #28	ENSSTOG00000033144 #29	INCENP (ENSSTOG00000014541) #32	ENSSTOG00000034070	ENSSTOG00000014521 ##33	BEST1 (ENSSTOG00000014508) #34	RAB3IL1 (ENSSTOG00000014496) #35	FADS3 (ENSSTOG00000019661) #36	FADS2 (ENSSTOG00000014489) ##36	FADS1 (ENSSTOG00000003391) ##36	FEN1 (ENSSTOG00000003387)	ENSSTOG00000031633	TMEM258 (ENSSTOG00000003383)
Arctic ground squirrel	MODERN SPECIES	366	LRRN4CL (ENSUPAG00010005167)	UBXN1 (ENSUPAG00010005156) #10	UQCC3 (ENSUPAG00010005149) #11	CSKMT (ENSUPAG00010005145) #12	C11orf98 (ENSUPAG00010005135) #13	INTS5 (ENSUPAG00010005127) #14	GANAB (ENSUPAG00010005106) #15	B3GAT3 (ENSUPAG00010005100) #16	ROM1 (ENSUPAG00010005099) #17	EML3 (ENSUPAG00010005056) #18	MTA2 (ENSUPAG00010005038) #19	TUT1 (ENSUPAG00010005020) #20	EEF1G (ENSUPAG00010005012) #21	ENSUPAG00010004999 #22	ENSUPAG00010004996	ENSUPAG00010004986 ##22	ASRGL1 (ENSUPAG00010004983) #24	ENSUPAG00010004973 #29	ENSUPAG00010004955 #28	ENSUPAG00010004946 #29	ENSUPAG00010004941 #28	INCENP (ENSUPAG00010004917) #32	ENSUPAG00010004905 ##33	BEST1 (ENSUPAG00010004888) #34	ENSUPAG00010004814 #35	FADS2 (ENSUPAG00010004799) ##36	FADS1 (ENSUPAG00010004789) ##36	ENSUPAG00010004784	FEN1 (ENSUPAG00010004780)	ENSUPAG00010004772	MYRF (ENSUPAG00010004659)
Hystricomorpha	ANCESTRAL SPECIES	37	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.e #29	ENSGT00940000161089	ENSGT00950000183151.a.a.a	ENSGT00390000015415	ENSGT00950000183197.b.a	ENSGT00390000018587	ENSGT00940000153899.a.a	ENSGT00730000110905.a	ENSGT00390000001149	ENSGT00390000003127	ENSGT00940000155040.a	ENSGT00940000157180	ENSGT00940000161192
Hystricomorpha_a	ANCESTRAL SPECIES	44	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00940000161089	ENSGT00950000183151.a.a.a	ENSGT00390000015415	ENSGT00950000183197.b.a	ENSGT00390000018587	ENSGT00940000153899.a.a	ENSGT00730000110905.a	ENSGT00390000001149	ENSGT00390000003127	ENSGT00940000155040.a	ENSGT00940000157180	ENSGT00940000161192	ENSGT00530000063626.a
Hystricomorpha_b	ANCESTRAL SPECIES	80	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00950000183045.A.a.a #24	ENSGT00940000161089	ENSGT00950000183151.a.a.a	ENSGT00390000015415	ENSGT00950000183197.b.a	ENSGT00390000018587	ENSGT00940000153899.a.a	ENSGT00730000110905.a	ENSGT00390000001149	ENSGT00390000003127	ENSGT00940000155040.a	ENSGT00940000157180	ENSGT00940000161192	ENSGT00530000063626.a	ENSGT00390000010089.f
Degu	MODERN SPECIES	320	ENSODEG00000018748	ENSODEG00000002048	HNRNPUL2 (ENSODEG00000002142) #7	TTC9C (ENSODEG00000002308)	GNG3 (ENSODEG00000002315) #9	UBXN1 (ENSODEG00000002987) #10	UQCC3 (ENSODEG00000003020) #11	INTS5 (ENSODEG00000003038) #14	GANAB (ENSODEG00000003210) #15	B3GAT3 (ENSODEG00000003388) #16	ROM1 (ENSODEG00000003428) #17	EML3 (ENSODEG00000003455) #18	MTA2 (ENSODEG00000003595) #19	TUT1 (ENSODEG00000002204) #20	ENSODEG00000002254 #21	ENSODEG00000002275 ##22	ENSODEG00000002297	ENSODEG00000002313 #24	ENSODEG00000002333 #24	VWCE (ENSODEG00000002356)	DDB1 (ENSODEG00000002419)	CYB561A3 (ENSODEG00000002516)	TKFC (ENSODEG00000002529)	TMEM138 (ENSODEG00000002548)	TMEM216 (ENSODEG00000002567)	CPSF7 (ENSODEG00000002610)	SDHAF2 (ENSODEG00000002638)	PPP1R32 (ENSODEG00000004127)	SYT7 (ENSODEG00000004157)	DAGLA (ENSODEG00000004222)	MYRF (ENSODEG00000004367)
Long-tailed chinchilla	MODERN SPECIES	306	LRRN4CL (ENSCLAG00000000228)	GNG3 (ENSCLAG00000000268) #9	BSCL2 (ENSCLAG00000000105) #8	UQCC3 (ENSCLAG00000000136) #11	UBXN1 (ENSCLAG00000000144) #10	CSKMT (ENSCLAG00000000298) #12	C11orf98 (ENSCLAG00000000342) #13	INTS5 (ENSCLAG00000000384) #14	GANAB (ENSCLAG00000000345) #15	B3GAT3 (ENSCLAG00000001628) #16	ROM1 (ENSCLAG00000000479) #17	EML3 (ENSCLAG00000001662) #18	MTA2 (ENSCLAG00000000128) #19	TUT1 (ENSCLAG00000000215) #20	EEF1G (ENSCLAG00000000315) #21	ENSCLAG00000000347 ##22
Guinea pig	MODERN SPECIES	44	GNG3 (ENSCPOG00000040497) #9	LRRN4CL (ENSCPOG00000036188)	BSCL2 (ENSCPOG00000021949) #8	UBXN1 (ENSCPOG00000004750) #10	UQCC3 (ENSCPOG00000035939) #11	CSKMT (ENSCPOG00000027504) #12	C11orf98 (ENSCPOG00000039535) #13	INTS5 (ENSCPOG00000003669) #14	GANAB (ENSCPOG00000003659) #15	B3GAT3 (ENSCPOG00000021841) #16	ROM1 (ENSCPOG00000020227) #17	EML3 (ENSCPOG00000014293) #18	MTA2 (ENSCPOG00000014290) #19	TUT1 (ENSCPOG00000014281) #20	EEF1G (ENSCPOG00000025703) #21	ENSCPOG00000032311 ##22	ASRGL1 (ENSCPOG00000038025) #24	ENSCPOG00000030162 ##28
Rodentia_B	ANCESTRAL SPECIES	5	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Myomorpha	ANCESTRAL SPECIES	4	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Muroidea	ANCESTRAL SPECIES	2	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Muroidea_A	ANCESTRAL SPECIES		ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a #29	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f
Murinae	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00530000063866.f.a.a.a #29	ENSGT00530000063866.f.a.b #29	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Mus	ANCESTRAL SPECIES		ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Mus_C	ANCESTRAL SPECIES	25	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192	ENSGT00940000157180
Steppe mouse	MODERN SPECIES	2399				Uqcc3 (ENSMSIG00000030087) #11	ENSMSIG00000030086	1810009A15Rik (ENSMSIG00000030082) #13	Ints5 (ENSMSIG00000030081) #14	Ganab (ENSMSIG00000030073) #15	B3gat3 (ENSMSIG00000030069) #16	Rom1 (ENSMSIG00000030067) #17	Eml3 (ENSMSIG00000030059) #18	Mta2 (ENSMSIG00000030052) #19	Tut1 (ENSMSIG00000030047) #20	ENSMSIG00000030044 #21	ENSMSIG00000030038 #22	ENSMSIG00000030024 ##22	Scgb1a1 (ENSMSIG00000030022)	Asrgl1 (ENSMSIG00000030021) #24
Ryukyu mouse	MODERN SPECIES	10	Gng3 (MGP_CAROLIEiJ_G0022657) #9	Bscl2 (MGP_CAROLIEiJ_G0022658) #8	Lrrn4cl (MGP_CAROLIEiJ_G0022659)	Ubxn1 (MGP_CAROLIEiJ_G0022660) #10	Uqcc3 (MGP_CAROLIEiJ_G0022661) #11	MGP_CAROLIEiJ_G0022662	MGP_CAROLIEiJ_G0022663 #13	Ints5 (MGP_CAROLIEiJ_G0022664) #14	Ganab (MGP_CAROLIEiJ_G0022665) #15	B3gat3 (MGP_CAROLIEiJ_G0022666) #16	Rom1 (MGP_CAROLIEiJ_G0022667) #17	Eml3 (MGP_CAROLIEiJ_G0022668) #18	Mta2 (MGP_CAROLIEiJ_G0022669) #19	Tut1 (MGP_CAROLIEiJ_G0022670) #20	Eef1g (MGP_CAROLIEiJ_G0022671) #21	MGP_CAROLIEiJ_G0022672 ##22	Scgb1a1 (MGP_CAROLIEiJ_G0022673)	Asrgl1 (MGP_CAROLIEiJ_G0022674) #24	Incenp (MGP_CAROLIEiJ_G0022675) #32	Fth1 (MGP_CAROLIEiJ_G0022676) ##33	Best1 (MGP_CAROLIEiJ_G0022677) #34	Rab3il1 (MGP_CAROLIEiJ_G0022678) #35	Fads3 (MGP_CAROLIEiJ_G0022679) #36	Fads2 (MGP_CAROLIEiJ_G0022680) ##36	Fads1 (MGP_CAROLIEiJ_G0022681) ##36	Fen1 (MGP_CAROLIEiJ_G0022682)	Tmem258 (MGP_CAROLIEiJ_G0022683)	Myrf (MGP_CAROLIEiJ_G0022684)	Dagla (MGP_CAROLIEiJ_G0022685)	Syt7 (MGP_CAROLIEiJ_G0022686)	Lrrc10b (MGP_CAROLIEiJ_G0022687)
Cricetidae	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u ##28	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00520000061410	ENSGT00940000155807.a	ENSGT00390000010089.f	ENSGT00530000063626.a
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000162696	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.a ##22	ENSGT00940000154902.bb.b #22	ENSGT00940000155073.b	ENSGT00950000183045.A.a.a #24	ENSGT00730000111073 #32	ENSGT00950000182841.b.a.a.b.a.a.b.a ##33	ENSGT00940000158650 #34	ENSGT00940000159102 #35	ENSGT00950000182990.a.a.a.b.u.b #36	ENSGT00950000182990.a.a.a.b.u.a ##36	ENSGT00950000182990.a.a.b.b ##36	ENSGT00940000155807.a	ENSGT00520000061410	ENSGT00390000010089.f	ENSGT00530000063626.a	ENSGT00940000161192
Northern American deer mouse	MODERN SPECIES		Hnrnpul2 (ENSPEMG00000015546) #7	Gng3 (ENSPEMG00000028724) #9	Bscl2 (ENSPEMG00000031381) #8	Lrrn4cl (ENSPEMG00000016106)	Ubxn1 (ENSPEMG00000015778) #10	Uqcc3 (ENSPEMG00000030804) #11	1810009A15Rik (ENSPEMG00000031275) #13	Ints5 (ENSPEMG00000004838) #14	Ganab (ENSPEMG00000003185) #15	B3gat3 (ENSPEMG00000009881) #16	Rom1 (ENSPEMG00000003110) #17	Eml3 (ENSPEMG00000008367) #18	Mta2 (ENSPEMG00000007490) #19	Tut1 (ENSPEMG00000018332) #20	Eef1g (ENSPEMG00000004247) #21	ENSPEMG00000019243 ##22	ENSPEMG00000026154 #22	ENSPEMG00000024701	Scgb1a1 (ENSPEMG00000009557)	Asrgl1 (ENSPEMG00000018019) #24	ENSPEMG00000028067	Incenp (ENSPEMG00000008252) #32	ENSPEMG00000020638	Fth1 (ENSPEMG00000017564) ##33	ENSPEMG00000012703 #34	Rab3il1 (ENSPEMG00000011822) #35	Fads3 (ENSPEMG00000012107) #36	Fads2 (ENSPEMG00000015890) ##36	Fads1 (ENSPEMG00000008265) ##36	Fen1 (ENSPEMG00000009788)	ENSPEMG00000011273
Prairie vole	MODERN SPECIES	16	Gng3 (ENSMOCG00000020628) #9	ENSMOCG00000009001	Lrrn4cl (ENSMOCG00000009512)	Ubxn1 (ENSMOCG00000010707) #10	Uqcc3 (ENSMOCG00000009973) #11	ENSMOCG00000016664	ENSMOCG00000017433 #13	Ints5 (ENSMOCG00000017768) #14	Ganab (ENSMOCG00000021495) #15	B3gat3 (ENSMOCG00000011586) #16	Rom1 (ENSMOCG00000012581) #17	Eml3 (ENSMOCG00000013304) #18	Mta2 (ENSMOCG00000001999) #19	Tut1 (ENSMOCG00000015834) #20	ENSMOCG00000019677 #21	ENSMOCG00000012405 ##22	Scgb1a1 (ENSMOCG00000014419)	Asrgl1 (ENSMOCG00000022216) #24	Fam111a (ENSMOCG00000017922)	Gm4952 (ENSMOCG00000015076)	Glyat (ENSMOCG00000016115)	Keg1 (ENSMOCG00000012983)	Cntf (ENSMOCG00000016049)	Zfp91 (ENSMOCG00000018468)	Lpxn (ENSMOCG00000019266)	Or5b21 (ENSMOCG00000002067)	ENSMOCG00000009033	ENSMOCG00000017684	Or9q1 (ENSMOCG00000009793)	Tle4 (ENSMOCG00000011846)	ENSMOCG00000017959
Cricetinae	ANCESTRAL SPECIES																	ENSGT00940000154902.bb.a ##22
Golden Hamster	MODERN SPECIES	617	Polr2g (ENSMAUG00000013079)	Zbtb3 (ENSMAUG00000013055)	Ttc9c (ENSMAUG00000013136)	Hnrnpul2 (ENSMAUG00000013163) #7	Gng3 (ENSMAUG00000012624) #9	Bscl2 (ENSMAUG00000012700) #8	Lrrn4cl (ENSMAUG00000012372)	Ubxn1 (ENSMAUG00000012982) #10	ENSMAUG00000013717	Ints5 (ENSMAUG00000012790) #14	Ganab (ENSMAUG00000013759) #15	Rom1 (ENSMAUG00000012854) #17	Eml3 (ENSMAUG00000014204) #18	Mta2 (ENSMAUG00000012749) #19	Tut1 (ENSMAUG00000012453) #20	ENSMAUG00000012867 ##22	Asrgl1 (ENSMAUG00000012422) #24	Incenp (ENSMAUG00000013427) #32	Fth1 (ENSMAUG00000013659) ##33	ENSMAUG00000013033 #34	Rab3il1 (ENSMAUG00000012007) #35	Fads3 (ENSMAUG00000012190) #36	Fads2 (ENSMAUG00000012801) ##36	Fads1 (ENSMAUG00000013100) ##36	ENSMAUG00000012365	Fen1 (ENSMAUG00000012401)	Tmem258 (ENSMAUG00000011933)	Myrf (ENSMAUG00000013986)	Dagla (ENSMAUG00000013406)	Syt7 (ENSMAUG00000012225)	Lrrc10b (ENSMAUG00000002510)
Mammalia	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Theria	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Eutheria	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Boreoeutheria	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Glires	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Rodentia	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Naked mole-rat female	MODERN SPECIES	14	HNRNPUL2 (ENSHGLG00000003285) #7	GNG3 (ENSHGLG00000038630) #9	BSCL2 (ENSHGLG00000002887) #8	ENSHGLG00000038756	UBXN1 (ENSHGLG00000002960) #10	METTL12 (ENSHGLG00000044833) #12	ENSHGLG00000002601 #13	INTS5 (ENSHGLG00000039217) #14	ENSHGLG00000045807 #15	ENSHGLG00000045092 #15	B3GAT3 (ENSHGLG00000004546) #16	ROM1 (ENSHGLG00000003990) #17	MTA2 (ENSHGLG00000002877) #19	ENSHGLG00000037053 #20	EEF1G (ENSHGLG00000046941) #21	ENSHGLG00000034389 ##22	ENSHGLG00000037481 #22	ENSHGLG00000035437	ENSHGLG00000038948 #24	ENSHGLG00000029155	ENSHGLG00000046269 #29	ENSHGLG00000033722	ENSHGLG00000002837	ENSHGLG00000046341	TKFC (ENSHGLG00000018883)	CYB561A3 (ENSHGLG00000013997)	ENSHGLG00000034372	ENSHGLG00000038968	ENSHGLG00000019090	ENSHGLG00000032097	LRRC10B (ENSHGLG00000020706)
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Kangaroo rat	MODERN SPECIES	436	Ttc9c (ENSDORG00000028105)	Hnrnpul2 (ENSDORG00000008678) #7	Gng3 (ENSDORG00000025670) #9	ENSDORG00000024721	Ubxn1 (ENSDORG00000009406) #10	Uqcc3 (ENSDORG00000025423) #11	1810009A15Rik (ENSDORG00000025730) #13	Ints5 (ENSDORG00000025017) #14	Ganab (ENSDORG00000011363) #15	B3gat3 (ENSDORG00000004024) #16	Rom1 (ENSDORG00000004023) #17	Eml3 (ENSDORG00000004021) #18	Mta2 (ENSDORG00000004019) #19	Tut1 (ENSDORG00000004018) #20	Eef1g (ENSDORG00000004017) #21	ENSDORG00000026538 ##22	Asrgl1 (ENSDORG00000014041) #24	ENSDORG00000026990	Incenp (ENSDORG00000009799) #32	Fth1 (ENSDORG00000024132) ##33	ENSDORG00000027094 #34	ENSDORG00000001649 #35	Fads3 (ENSDORG00000001648) #36	Fads2 (ENSDORG00000000340) ##36	Fads1 (ENSDORG00000019737) ##36	Fen1 (ENSDORG00000002039)	Tmem258 (ENSDORG00000002038)	Myrf (ENSDORG00000002029)	Dagla (ENSDORG00000002025)	Syt7 (ENSDORG00000006357)	ENSDORG00000006355
Laurasiatheria	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Laurasiatheria_a	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Carnivora	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Caniformia	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Ursidae	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Ursus	ANCESTRAL SPECIES																	ENSGT00940000154902.ab ##22
Polar bear	MODERN SPECIES	303	LRRN4CL (ENSUMAG00000014439)	UBXN1 (ENSUMAG00000014411) #10	UQCC3 (ENSUMAG00000014404) #11	CSKMT (ENSUMAG00000014401) #12	C11orf98 (ENSUMAG00000014389) #13	INTS5 (ENSUMAG00000014386) #14	ENSUMAG00000014377 #15	ENSUMAG00000014362 #15	B3GAT3 (ENSUMAG00000014361) #16	ROM1 (ENSUMAG00000014360) #17	EML3 (ENSUMAG00000014237) #18	MTA2 (ENSUMAG00000012887) #19	TUT1 (ENSUMAG00000012710) #20	EEF1G (ENSUMAG00000012578) #21	ENSUMAG00000012558 #22	ENSUMAG00000012537 ##22	SCGB1A1 (ENSUMAG00000012532)	ASRGL1 (ENSUMAG00000012529) #24	ENSUMAG00000012527 #29	ENSUMAG00000012524 #28	ENSUMAG00000012520 #29	ENSUMAG00000012516 #28	ENSUMAG00000012499 ##33	BEST1 (ENSUMAG00000012478) #34	ENSUMAG00000012469 #36	ENSUMAG00000012456 #36	FADS2 (ENSUMAG00000012446) ##36	FADS1 (ENSUMAG00000012081) ##36	ENSUMAG00000012035	FEN1 (ENSUMAG00000012034)	TMEM258 (ENSUMAG00000012032)
Sauria	ANCESTRAL SPECIES	65	ENSGT00390000002615 #13	ENSGT00510000049875 #12	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Archelosauria	ANCESTRAL SPECIES	72		ENSGT01010000222658	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Archosauria	ANCESTRAL SPECIES	76			ENSGT00940000154901.C.b.f.b.a.a	ENSGT00940000154901.C.b.f.b.b.a.a	ENSGT00940000154901.C.b.f.b.b.a.b	ENSGT00940000155070	ENSGT00940000161776	ENSGT00390000016784	ENSGT00940000159147	ENSGT00940000154524.a	ENSGT00940000157743	ENSGT00390000017253	ENSGT00390000007479	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Australian saltwater crocodile	MODERN SPECIES	64	ESR2 (ENSCPRG00005016580)	MTHFD1 (ENSCPRG00005016135)	AKAP5 (ENSCPRG00005016108)	ZBTB25 (ENSCPRG00005016106)	ZBTB1 (ENSCPRG00005016100)	HSPA2 (ENSCPRG00005016094)	PPP1R36 (ENSCPRG00005016089)	ENSCPRG00005016087	ENSCPRG00005016085	BRF1 (ENSCPRG00005016078)	NUDT14 (ENSCPRG00005016074)	JAG2 (ENSCPRG00005016017)	ENSCPRG00005016010	ENSCPRG00005016008	CLBA1 (ENSCPRG00005016007)	ENSCPRG00005015998 #22	PLD4 (ENSCPRG00005015991)	CEP170B (ENSCPRG00005015985)	ENSCPRG00005015980	AKT1 (ENSCPRG00005015965)	ENSCPRG00005015958	ADSS1 (ENSCPRG00005015931)	INF2 (ENSCPRG00005015924)	TMEM179 (ENSCPRG00005015921)	KIF26A (ENSCPRG00005015914)	ASPG (ENSCPRG00005015909)	RD3L (ENSCPRG00005015908)	TDRD9 (ENSCPRG00005015883)	ENSCPRG00005015875	PPP1R13B (ENSCPRG00005015869)	ZFYVE21 (ENSCPRG00005015861)
Aves	ANCESTRAL SPECIES	70			ENSGT00940000154901.C.b.f.b.a.a	ENSGT00940000154901.C.b.f.b.b.a.a	ENSGT00940000154901.C.b.f.b.b.a.b	ENSGT00940000155070	ENSGT00940000161776	ENSGT00390000016784	ENSGT00940000159147	ENSGT00940000154524.a	ENSGT00940000157743	ENSGT00390000017253	ENSGT00390000007479	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
African ostrich	MODERN SPECIES	18																AHNAK (ENSSCUG00000000063) #22
Neognathae	ANCESTRAL SPECIES	51	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00640000091486.a	ENSGT00940000173994	ENSGT01060000249020	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Galloanserae	DUPLICATION
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000154902.d.a #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000154902.d.a #22
Japanese quail	MODERN SPECIES	487																ENSCJPG00005002166 #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000154902.d.a #22
Duck	MODERN SPECIES	946																ENSAPLG00000023109 #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000154902.d.b #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000154902.d.b #22
Pink-footed goose	MODERN SPECIES	667															ENSABRG00000013853 #22	ENSABRG00000013714 #22
Duck	MODERN SPECIES	3801																ENSAPLG00000019169 #22
Galloanserae	ANCESTRAL SPECIES	137															ENSGT00390000007552 #21	ENSGT00940000154902.e #22
Anatidae	ANCESTRAL SPECIES																	ENSGT00940000154902.e #22
Pink-footed goose	MODERN SPECIES	667																ENSABRG00000013853 #22	ENSABRG00000013714 #22
Duck	DUPLICATION
Duck	MODERN SPECIES	3281																ENSAPLG00000016739 #22
Duck	MODERN SPECIES	2218																ENSAPLG00000020370 #22
Phasianidae	ANCESTRAL SPECIES	107															ENSGT00390000007552 #21	ENSGT00940000154902.e #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000154902.e #22
Turkey	MODERN SPECIES	1202																ENSMGAG00000022382 #22
Japanese quail	MODERN SPECIES	54														CAPN1 (ENSCJPG00005002503)	EEF1G (ENSCJPG00005002495) #21	ENSCJPG00005002490 #22	ZNHIT2 (ENSCJPG00005002483)
Neognathae_b	ANCESTRAL SPECIES	39	ENSGT00980000200147	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00960000189643	ENSGT01000000214440.C	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT00530000064165.a	ENSGT01000000215390	ENSGT00940000157074	ENSGT00950000182985.b.b
Neognathae_c	ANCESTRAL SPECIES	59													ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT01000000215390	ENSGT00940000157074	ENSGT00960000191711
Golden eagle	MODERN SPECIES	28																AHNAK (ENSACCG00020011218) #22
Kakapo	MODERN SPECIES	75	ENSSHBG00005019307	ENSSHBG00005019310	ENSSHBG00005019314	DPF2 (ENSSHBG00005019320)	CDC42EP2 (ENSSHBG00005019329)	POLA2 (ENSSHBG00005019332)	CAPN1 (ENSSHBG00005019338)	SYVN1 (ENSSHBG00005019344)	ENSSHBG00005019348	MRPL49 (ENSSHBG00005019350)	FAU (ENSSHBG00005019353)	WDR74 (ENSSHBG00005019356)	INTS5 (ENSSHBG00005019375) #14	POLR2G (ENSSHBG00005019378)	EEF1G (ENSSHBG00005019380) #21	AHNAK (ENSSHBG00005019382) #22	B4GAT1 (ENSSHBG00005019385)	ENSSHBG00005019387	ENSSHBG00005019391	FKBP2 (ENSSHBG00005019395)	ENSSHBG00005019397	ENSSHBG00005019401	ARL2 (ENSSHBG00005019404)	ENSSHBG00005019406
Passeriformes	ANCESTRAL SPECIES	43	ENSGT00940000157482	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00960000189643	ENSGT01000000214440.C	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT00530000064165.a	ENSGT01000000215390	ENSGT00940000157074	ENSGT00950000182985.b.b
Great tit	MODERN SPECIES	380																ENSPMJG00000002205 #22
Passeriformes_d	ANCESTRAL SPECIES	38	ENSGT00940000157482	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00960000189643	ENSGT01000000214440.C	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT00530000064165.a	ENSGT01000000215390	ENSGT00940000157074	ENSGT00950000182985.b.b
Flycatcher	MODERN SPECIES	44																ENSFALG00000024217 #22
Passeriformes_g	ANCESTRAL SPECIES	44	ENSGT00940000157482	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00960000189643	ENSGT01000000214440.C	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT00530000064165.a	ENSGT01000000215390	ENSGT00940000157074	ENSGT00950000182985.b.b
Medium ground finch	MODERN SPECIES	617																ENSGFOG00000003657 #22
Passeroidea	ANCESTRAL SPECIES	54	ENSGT00940000157482	ENSGT00940000155031	ENSGT00940000154196.a	ENSGT00390000014903	ENSGT00960000189643	ENSGT01000000214440.C	ENSGT00390000007539	ENSGT00390000012589	ENSGT00940000160376 #7	ENSGT01100000263497.B #9	ENSGT00390000011639 #8	ENSGT00940000156457 #10	ENSGT00390000008374 #14	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000157679	ENSGT00530000064165.a	ENSGT01000000215390	ENSGT00940000157074	ENSGT00950000182985.b.b
Common canary	MODERN SPECIES	436																ENSSCAG00000000550 #22
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	38	ENSTGUG00000026804	ENSTGUG00000018975	ENSTGUG00000023367	ENSTGUG00000019144	ENSTGUG00000025402	ENSTGUG00000024672	ENSTGUG00000025536	ENSTGUG00000027721	ENSTGUG00000024709	ENSTGUG00000020446 #7	ENSTGUG00000029251 #8	ENSTGUG00000022895	ENSTGUG00000022510 #14	ENSTGUG00000014456	ENSTGUG00000019257 #21	ENSTGUG00000028725 #22	ENSTGUG00000023972	ENSTGUG00000029303	ENSTGUG00000019532	ENSTGUG00000024903	ENSTGUG00000026847	ENSTGUG00000023172	ENSTGUG00000019002	ENSTGUG00000020399	ENSTGUG00000022783	ENSTGUG00000023246	ZNHIT2 (ENSTGUG00000028129)	ENSTGUG00000024115	ENSTGUG00000026301	ENSTGUG00000021607	ENSTGUG00000028351
Zebra finch	MODERN SPECIES	38	ENSTGUG00000023760	ENSTGUG00000029242	ENSTGUG00000027751	ENSTGUG00000020420	ENSTGUG00000026539	ENSTGUG00000025733	STX5 (ENSTGUG00000021933)	ENSTGUG00000027990	ENSTGUG00000022623	ENSTGUG00000020163 #7	ENSTGUG00000022941 #9	ENSTGUG00000020286 #8	UBXN1 (ENSTGUG00000029060) #10	ENSTGUG00000025943 #14	ENSTGUG00000022402	ENSTGUG00000026145 #22	ENSTGUG00000024726	ENSTGUG00000019935	ENSTGUG00000019544	ENSTGUG00000024122 #21	ENSTGUG00000021122	ENSTGUG00000028351	ENSTGUG00000021607	ENSTGUG00000026301	ENSTGUG00000024115	ZNHIT2 (ENSTGUG00000028129)	ENSTGUG00000023246	ENSTGUG00000022783	ENSTGUG00000020399	ENSTGUG00000019002	ENSTGUG00000023172
Cryptodira	ANCESTRAL SPECIES	61	ENSGT01010000222658	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	323											TTC9C (ENSPSIG00000003786)	ZBTB3 (ENSPSIG00000001786)	ENSPSIG00000003872	POLR2G (ENSPSIG00000004285)	EEF1G (ENSPSIG00000004341) #21	AHNAK (ENSPSIG00000005107) #22	ENSPSIG00000005776
Chinese turtle	MODERN SPECIES	1797																ENSPSIG00000000499 #22	PLD4 (ENSPSIG00000009358)	CEP170B (ENSPSIG00000009304)	ENSPSIG00000000487	AKT1 (ENSPSIG00000007672)	SIVA1 (ENSPSIG00000007435)	ADSS1 (ENSPSIG00000016960)	ENSPSIG00000016620	ENSPSIG00000015949	TMEM179 (ENSPSIG00000015912)	ENSPSIG00000000482
Testudinoidea	DUPLICATION
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b ##30	ENSGT00530000064244.a	ENSGT00940000161980
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b ##30	ENSGT00530000064244.a
Three-toed box turtle	MODERN SPECIES	33	UBXN1 (ENSTMTG00000012978) #10	ENSTMTG00000012995	LRRN4CL (ENSTMTG00000013015)	BSCL2 (ENSTMTG00000013029) #8	GNG3 (ENSTMTG00000013041) #9	ENSTMTG00000013079	HNRNPUL2 (ENSTMTG00000013466) #7	TTC9C (ENSTMTG00000013495)	ENSTMTG00000013508	ENSTMTG00000013525	ZBTB3 (ENSTMTG00000013561)	ENSTMTG00000013589	POLR2G (ENSTMTG00000013614)	EEF1G (ENSTMTG00000013633) #21	ENSTMTG00000013656 #22	ENSTMTG00000013689 #22	FAM120A (ENSTMTG00000013895)	PHF2 (ENSTMTG00000013921)	BARX1 (ENSTMTG00000013965)	PTPDC1 (ENSTMTG00000013986)	ENSTMTG00000014035	WNT7A (ENSTMTG00000014061)	FBLN2 (ENSTMTG00000014092)
painted turtle	MODERN SPECIES	884	BSCL2 (ENSCPBG00000017959) #8	GNG3 (ENSCPBG00000017960) #9	ENSCPBG00000017961	HNRNPUL2 (ENSCPBG00000017963) #7	ENSCPBG00000017964	ENSCPBG00000017965	ENSCPBG00000017967	ENSCPBG00000017968	ZBTB3 (ENSCPBG00000017969)	ENSCPBG00000017970	POLR2G (ENSCPBG00000017972)	EEF1G (ENSCPBG00000017974) #21	ENSCPBG00000017976	ENSCPBG00000017978 #22	ENSCPBG00000017981 #22	ENSCPBG00000017984 #22
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000156484.a	ENSGT00980000201892	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00960000189495	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b ##30	ENSGT00530000064244.a
Goode s thornscrub tortoise	MODERN SPECIES	21	UBXN1 (ENSGEVG00005007492) #10	ENSGEVG00005007440	ENSGEVG00005007419	BSCL2 (ENSGEVG00005007400) #8	GNG3 (ENSGEVG00005007379) #9	ENSGEVG00005007352	HNRNPUL2 (ENSGEVG00005007313) #7	TTC9C (ENSGEVG00005007294)	ENSGEVG00005007283	ENSGEVG00005007267	ENSGEVG00005007247	ENSGEVG00005007197	POLR2G (ENSGEVG00005007177)	EEF1G (ENSGEVG00005007153) #21	RPL36AL (ENSGEVG00005007124)	AHNAK (ENSGEVG00005007107) #22	FAM120A (ENSGEVG00005006605)	PHF2 (ENSGEVG00005006330)	BARX1 (ENSGEVG00005006201)	ENSGEVG00005006181	ENSGEVG00005006143	WNT7A (ENSGEVG00005006076)	FBLN2 (ENSGEVG00005005981)	ENSGEVG00005005963	HDAC11 (ENSGEVG00005005930)	NUP210 (ENSGEVG00005005766)	IQSEC1 (ENSGEVG00005005708)	ACAD9 (ENSGEVG00005005630)	ENSGEVG00005005602	ENSGEVG00005005535 ##30	GP9 (ENSGEVG00005005510)
Abingdon island giant tortoise	MODERN SPECIES	142	ENSCABG00000021907	ENSCABG00000021908	BSCL2 (ENSCABG00000021909) #8	ENSCABG00000021910	GNG3 (ENSCABG00000021911) #9	HNRNPUL2 (ENSCABG00000021912) #7	TTC9C (ENSCABG00000021913)	ENSCABG00000021914	ENSCABG00000021915	ENSCABG00000021916	ENSCABG00000021917	POLR2G (ENSCABG00000021918)	EEF1G (ENSCABG00000021919) #21	ENSCABG00000021921	ENSCABG00000021922 #22	ENSCABG00000021923 #22	FAM120A (ENSCABG00000021925)	PHF2 (ENSCABG00000021927)	BARX1 (ENSCABG00000021928)	PTPDC1 (ENSCABG00000021929)	ENSCABG00000021930
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000154902.j.b #22
Emydidae	ANCESTRAL SPECIES																	ENSGT00940000154902.j.b #22
painted turtle	MODERN SPECIES	884	LRRN4CL (ENSCPBG00000017956)	BSCL2 (ENSCPBG00000017959) #8	GNG3 (ENSCPBG00000017960) #9	ENSCPBG00000017961	HNRNPUL2 (ENSCPBG00000017963) #7	ENSCPBG00000017964	ENSCPBG00000017965	ENSCPBG00000017967	ENSCPBG00000017968	ZBTB3 (ENSCPBG00000017969)	ENSCPBG00000017970	POLR2G (ENSCPBG00000017972)	EEF1G (ENSCPBG00000017974) #21	ENSCPBG00000017976	ENSCPBG00000017978 #22	ENSCPBG00000017981 #22	ENSCPBG00000017984 #22
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b ##30	ENSGT00530000064244.a
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00980000201892	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00960000189495	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b ##30
Abingdon island giant tortoise	MODERN SPECIES	142	UBXN1 (ENSCABG00000021905) #10	ENSCABG00000021907	ENSCABG00000021908	BSCL2 (ENSCABG00000021909) #8	ENSCABG00000021910	GNG3 (ENSCABG00000021911) #9	HNRNPUL2 (ENSCABG00000021912) #7	TTC9C (ENSCABG00000021913)	ENSCABG00000021914	ENSCABG00000021915	ENSCABG00000021916	ENSCABG00000021917	POLR2G (ENSCABG00000021918)	EEF1G (ENSCABG00000021919) #21	ENSCABG00000021921	ENSCABG00000021922 #22	ENSCABG00000021923 #22	FAM120A (ENSCABG00000021925)	PHF2 (ENSCABG00000021927)	BARX1 (ENSCABG00000021928)	PTPDC1 (ENSCABG00000021929)	ENSCABG00000021930
Emydidae	ANCESTRAL SPECIES	9	ENSGT01010000222658	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00390000018085.a.b.a	ENSGT00940000154902.k #22	ENSGT00940000154902.j.a #22	ENSGT00530000063168.a.a.a	ENSGT00940000158148	ENSGT00940000160218	ENSGT00390000004113	ENSGT00940000162955	ENSGT00940000158523	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00940000157312	ENSGT00390000008330	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b ##30
painted turtle	MODERN SPECIES	884	ENSCPBG00000017952	LRRN4CL (ENSCPBG00000017956)	BSCL2 (ENSCPBG00000017959) #8	GNG3 (ENSCPBG00000017960) #9	ENSCPBG00000017961	HNRNPUL2 (ENSCPBG00000017963) #7	ENSCPBG00000017964	ENSCPBG00000017965	ENSCPBG00000017967	ENSCPBG00000017968	ZBTB3 (ENSCPBG00000017969)	ENSCPBG00000017970	POLR2G (ENSCPBG00000017972)	EEF1G (ENSCPBG00000017974) #21	ENSCPBG00000017976	ENSCPBG00000017978 #22	ENSCPBG00000017981 #22	ENSCPBG00000017984 #22
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2853																ENSTMTG00000011865 #22
Three-toed box turtle	MODERN SPECIES	33	ENSTMTG00000012942	UBXN1 (ENSTMTG00000012978) #10	ENSTMTG00000012995	LRRN4CL (ENSTMTG00000013015)	BSCL2 (ENSTMTG00000013029) #8	GNG3 (ENSTMTG00000013041) #9	ENSTMTG00000013079	HNRNPUL2 (ENSTMTG00000013466) #7	TTC9C (ENSTMTG00000013495)	ENSTMTG00000013508	ENSTMTG00000013525	ZBTB3 (ENSTMTG00000013561)	ENSTMTG00000013589	POLR2G (ENSTMTG00000013614)	EEF1G (ENSTMTG00000013633) #21	ENSTMTG00000013656 #22	ENSTMTG00000013689 #22	FAM120A (ENSTMTG00000013895)	PHF2 (ENSTMTG00000013921)	BARX1 (ENSTMTG00000013965)	PTPDC1 (ENSTMTG00000013986)	ENSTMTG00000014035	WNT7A (ENSTMTG00000014061)	FBLN2 (ENSTMTG00000014092)
Lepidosauria	ANCESTRAL SPECIES	47	ENSGT00510000049875 #12	ENSGT00940000156457 #10	ENSGT00940000156484.a	ENSGT00940000162696	ENSGT00390000011639 #8	ENSGT01100000263497.B #9	ENSGT00390000015553.a.a.a	ENSGT00940000160376 #7	ENSGT00940000161805	ENSGT00950000183181.A.b	ENSGT00940000161852.z	ENSGT00940000161486	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22
tuatara	DUPLICATION
tuatara	MODERN SPECIES	174	ENSSPUG00000008402 #13	CSKMT (ENSSPUG00000008416) #12	ENSSPUG00000008424	UBXN1 (ENSSPUG00000008433) #10	BSCL2 (ENSSPUG00000008452) #8	GNG3 (ENSSPUG00000008465) #9	ENSSPUG00000008490	TTC9C (ENSSPUG00000008571)	ENSSPUG00000008578	ENSSPUG00000008591	ZBTB3 (ENSSPUG00000008600)	ENSSPUG00000008606	POLR2G (ENSSPUG00000008614)	EEF1G (ENSSPUG00000008624) #21	ENSSPUG00000008634 #22	ENSSPUG00000008651 #22
tuatara	MODERN SPECIES	174	ENSSPUG00000008394 #13	ENSSPUG00000008402 #13	CSKMT (ENSSPUG00000008416) #12	ENSSPUG00000008424	UBXN1 (ENSSPUG00000008433) #10	BSCL2 (ENSSPUG00000008452) #8	GNG3 (ENSSPUG00000008465) #9	ENSSPUG00000008490	TTC9C (ENSSPUG00000008571)	ENSSPUG00000008578	ENSSPUG00000008591	ZBTB3 (ENSSPUG00000008600)	ENSSPUG00000008606	POLR2G (ENSSPUG00000008614)	EEF1G (ENSSPUG00000008624) #21	ENSSPUG00000008634 #22	ENSSPUG00000008651 #22
Episquamata	ANCESTRAL SPECIES	28															ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00930000151054	ENSGT00530000063721.B	ENSGT00940000161002	ENSGT00940000155978.b	ENSGT01090000260186
Toxicofera	ANCESTRAL SPECIES	78															ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000168352
Elapidae	ANCESTRAL SPECIES	55					ENSGT01030000234598.b.b	ENSGT00390000010028	ENSGT01070000254712	ENSGT00390000009753	ENSGT00390000001738	ENSGT00940000162464	ENSGT00390000000417.a.a.b.a.a.b	ENSGT00390000017147	ENSGT00390000007479	ENSGT00390000017253	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000168352
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	17	ENSNNAG00000005504	SSR2 (ENSNNAG00000005481)	ENSNNAG00000005464	CCT3 (ENSNNAG00000005361)	ENSNNAG00000005337	ENSNNAG00000005268	ZFPL1 (ENSNNAG00000005205)	VPS51 (ENSNNAG00000005175)	ENSNNAG00000005167	TM7SF2 (ENSNNAG00000005130)	ENSNNAG00000005116	MRPL49 (ENSNNAG00000005098)	ENSNNAG00000005048	EEF1G (ENSNNAG00000005019) #21	ENSNNAG00000005002 #22	ENSNNAG00000004831 #22	ENSNNAG00000004777	ARL2 (ENSNNAG00000004763)	SNX15 (ENSNNAG00000004743)	ENSNNAG00000004725	ENSNNAG00000004703	GPHA2 (ENSNNAG00000004684)	PPP2R5B (ENSNNAG00000004617)	ENSNNAG00000004593	ENSNNAG00000004581	ENSNNAG00000004560	USF1 (ENSNNAG00000004502)	IRGC (ENSNNAG00000004477)	ITLN1 (ENSNNAG00000004442)	TXNIP (ENSNNAG00000004423)	ENSNNAG00000004397
Indian cobra	MODERN SPECIES	17	ENSNNAG00000005517	ENSNNAG00000005504	SSR2 (ENSNNAG00000005481)	ENSNNAG00000005464	CCT3 (ENSNNAG00000005361)	ENSNNAG00000005337	ENSNNAG00000005268	ZFPL1 (ENSNNAG00000005205)	VPS51 (ENSNNAG00000005175)	ENSNNAG00000005167	TM7SF2 (ENSNNAG00000005130)	ENSNNAG00000005116	MRPL49 (ENSNNAG00000005098)	ENSNNAG00000005048	EEF1G (ENSNNAG00000005019) #21	ENSNNAG00000005002 #22	ENSNNAG00000004831 #22	ENSNNAG00000004777	ARL2 (ENSNNAG00000004763)	SNX15 (ENSNNAG00000004743)	ENSNNAG00000004725	ENSNNAG00000004703	GPHA2 (ENSNNAG00000004684)	PPP2R5B (ENSNNAG00000004617)	ENSNNAG00000004593	ENSNNAG00000004581	ENSNNAG00000004560	USF1 (ENSNNAG00000004502)	IRGC (ENSNNAG00000004477)	ITLN1 (ENSNNAG00000004442)	TXNIP (ENSNNAG00000004423)
Elapidae_a	ANCESTRAL SPECIES	119					ENSGT01030000234598.b.b	ENSGT00390000010028	ENSGT01070000254712	ENSGT00390000009753	ENSGT00390000001738	ENSGT00940000162464	ENSGT00390000000417.a.a.b.a.a.b	ENSGT00390000017147	ENSGT00390000007479	ENSGT00390000017253	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000168352
Acanthophiinae	ANCESTRAL SPECIES	111					ENSGT01030000234598.b.b	ENSGT00390000010028	ENSGT01070000254712	ENSGT00390000009753	ENSGT00390000001738	ENSGT00940000162464	ENSGT00390000000417.a.a.b.a.a.b	ENSGT00390000017147	ENSGT00390000007479	ENSGT00390000017253	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000168352
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	251	F11R (ENSNSUG00000016835)	USF1 (ENSNSUG00000016836)	ARHGAP30 (ENSNSUG00000016837)	ENSNSUG00000016838	NAALADL1 (ENSNSUG00000016839)	ZFPL1 (ENSNSUG00000016840)	VPS51 (ENSNSUG00000016841)	ENSNSUG00000016842	TM7SF2 (ENSNSUG00000016846)	ZNHIT2 (ENSNSUG00000016893)	FAU (ENSNSUG00000016894)	MRPL49 (ENSNSUG00000016895)	ENSNSUG00000016896	ENSNSUG00000016897 #21	ENSNSUG00000016898 #22	ENSNSUG00000016899 #22	SAC3D1 (ENSNSUG00000016900)	ARL2 (ENSNSUG00000016901)
Mainland tiger snake	MODERN SPECIES	251	ENSNSUG00000016833	F11R (ENSNSUG00000016835)	USF1 (ENSNSUG00000016836)	ARHGAP30 (ENSNSUG00000016837)	ENSNSUG00000016838	NAALADL1 (ENSNSUG00000016839)	ZFPL1 (ENSNSUG00000016840)	VPS51 (ENSNSUG00000016841)	ENSNSUG00000016842	TM7SF2 (ENSNSUG00000016846)	ZNHIT2 (ENSNSUG00000016893)	FAU (ENSNSUG00000016894)	MRPL49 (ENSNSUG00000016895)	ENSNSUG00000016896	ENSNSUG00000016897 #21	ENSNSUG00000016898 #22	ENSNSUG00000016899 #22	SAC3D1 (ENSNSUG00000016900)	ARL2 (ENSNSUG00000016901)
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	1496																ENSPTXG00000015447 #22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016561	ENSPTXG00000016560	TMEM79 (ENSPTXG00000016559)	ENSPTXG00000016558	ENSPTXG00000016557	CDCA5 (ENSPTXG00000016552)	ENSPTXG00000016548	VPS51 (ENSPTXG00000016545)	ENSPTXG00000016544	TM7SF2 (ENSPTXG00000016535)	ZNHIT2 (ENSPTXG00000016529)	FAU (ENSPTXG00000016527)	MRPL49 (ENSPTXG00000016524)	ENSPTXG00000016522	ENSPTXG00000016521 #21	ENSPTXG00000016519 #22	ENSPTXG00000016515 #22	SAC3D1 (ENSPTXG00000016512)	ARL2 (ENSPTXG00000016510)	SNX15 (ENSPTXG00000016507)	ENSPTXG00000016505	GPHA2 (ENSPTXG00000016503)	PPP2R5B (ENSPTXG00000016501)	ENSPTXG00000016498	ATG2A (ENSPTXG00000016494)	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)
Eastern brown snake	MODERN SPECIES	96	ENSPTXG00000016560	TMEM79 (ENSPTXG00000016559)	ENSPTXG00000016558	ENSPTXG00000016557	CDCA5 (ENSPTXG00000016552)	ENSPTXG00000016548	VPS51 (ENSPTXG00000016545)	ENSPTXG00000016544	TM7SF2 (ENSPTXG00000016535)	ZNHIT2 (ENSPTXG00000016529)	FAU (ENSPTXG00000016527)	MRPL49 (ENSPTXG00000016524)	ENSPTXG00000016522	ENSPTXG00000016521 #21	ENSPTXG00000016519 #22	ENSPTXG00000016515 #22	SAC3D1 (ENSPTXG00000016512)	ARL2 (ENSPTXG00000016510)	SNX15 (ENSPTXG00000016507)	ENSPTXG00000016505	GPHA2 (ENSPTXG00000016503)	PPP2R5B (ENSPTXG00000016501)	ENSPTXG00000016498	ATG2A (ENSPTXG00000016494)	ENSPTXG00000016490	ENSPTXG00000016488	PC (ENSPTXG00000016469)	ENSPTXG00000016468	ENSPTXG00000016467	HAPLN2 (ENSPTXG00000016465)	RHBG (ENSPTXG00000016463)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	8134																ENSLLTG00000014507 #22	SAC3D1 (ENSLLTG00000014510)	ARL2 (ENSLLTG00000014512)
Blue-lipped sea krait	MODERN SPECIES	7052																ENSLLTG00000005142 #22
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1649															ENSACAG00000043737 #22	ENSACAG00000034641 #22	ENSACAG00000003559	ENSACAG00000003536	ENSACAG00000035019	ENSACAG00000003518	ENSACAG00000041135	ENSACAG00000022762	ENSACAG00000003486	ENSACAG00000026804
Lizard	MODERN SPECIES	1649																ENSACAG00000043737 #22	ENSACAG00000034641 #22	ENSACAG00000003559	ENSACAG00000003536	ENSACAG00000035019	ENSACAG00000003518	ENSACAG00000041135	ENSACAG00000022762	ENSACAG00000003486	ENSACAG00000026804
Laterata	ANCESTRAL SPECIES	60															ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000160988	ENSGT00940000157941	ENSGT00940000160125	ENSGT00940000164485	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000154901.C.b.f.a	ENSGT00620000087966.b	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00930000151054	ENSGT00390000003837	ENSGT00530000063721.B	ENSGT00940000161002	ENSGT00940000155978.b
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	7	ANKRD35 (ENSPMRG00000017060)	PIAS3 (ENSPMRG00000017047)	NUDT17 (ENSPMRG00000017035)	ENSPMRG00000017028	PAQR6 (ENSPMRG00000017021)	SMG5 (ENSPMRG00000017013)	TMEM79 (ENSPMRG00000017009)	GLMP (ENSPMRG00000018637)	CCT3 (ENSPMRG00000018628)	ENSPMRG00000018624	SSR2 (ENSPMRG00000018621)	CST6 (ENSPMRG00000018614)	NAALADL1 (ENSPMRG00000018264)	EEF1G (ENSPMRG00000018217) #21	ENSPMRG00000018212 #22	AHNAK (ENSPMRG00000018207) #22	SAC3D1 (ENSPMRG00000018206)	ARL2 (ENSPMRG00000018200)	SNX15 (ENSPMRG00000018184)	ENSPMRG00000018172	ENSPMRG00000018169	PPP2R5B (ENSPMRG00000018160)	ENSPMRG00000018145	ATG2A (ENSPMRG00000018117)	EHD1 (ENSPMRG00000018098)	CDC42BPG (ENSPMRG00000016721)	SCYL1 (ENSPMRG00000016541)	ENSPMRG00000016533	ENSPMRG00000016527	ENSPMRG00000016509	FRMD8 (ENSPMRG00000016497)
Common wall lizard	MODERN SPECIES	7	ENSPMRG00000017067	ANKRD35 (ENSPMRG00000017060)	PIAS3 (ENSPMRG00000017047)	NUDT17 (ENSPMRG00000017035)	ENSPMRG00000017028	PAQR6 (ENSPMRG00000017021)	SMG5 (ENSPMRG00000017013)	TMEM79 (ENSPMRG00000017009)	GLMP (ENSPMRG00000018637)	CCT3 (ENSPMRG00000018628)	ENSPMRG00000018624	SSR2 (ENSPMRG00000018621)	CST6 (ENSPMRG00000018614)	NAALADL1 (ENSPMRG00000018264)	EEF1G (ENSPMRG00000018217) #21	ENSPMRG00000018212 #22	AHNAK (ENSPMRG00000018207) #22	SAC3D1 (ENSPMRG00000018206)	ARL2 (ENSPMRG00000018200)	SNX15 (ENSPMRG00000018184)	ENSPMRG00000018172	ENSPMRG00000018169	PPP2R5B (ENSPMRG00000018160)	ENSPMRG00000018145	ATG2A (ENSPMRG00000018117)	EHD1 (ENSPMRG00000018098)	CDC42BPG (ENSPMRG00000016721)	SCYL1 (ENSPMRG00000016541)	ENSPMRG00000016533	ENSPMRG00000016527	ENSPMRG00000016509
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	80	ENSSMRG00000020368	PELI3 (ENSSMRG00000020369)	DPP3 (ENSSMRG00000020370)	BBS1 (ENSSMRG00000020371)	ENSSMRG00000020372	ENSSMRG00000020374	FOSL1 (ENSSMRG00000020375)	CCDC85B (ENSSMRG00000020376)	FIBP (ENSSMRG00000020377)	EFEMP2 (ENSSMRG00000020378)	MUS81 (ENSSMRG00000020379)	CFL1 (ENSSMRG00000020380)	CD248 (ENSSMRG00000020381)	EEF1G (ENSSMRG00000020382) #21	ENSSMRG00000020384 #22	ENSSMRG00000020385 #22	SAC3D1 (ENSSMRG00000020386)	ARL2 (ENSSMRG00000020387)	SNX15 (ENSSMRG00000020388)	ENSSMRG00000020389	GPHA2 (ENSSMRG00000020392)	PPP2R5B (ENSSMRG00000020394)	ATG2A (ENSSMRG00000021175)	EHD1 (ENSSMRG00000021176)	MEN1 (ENSSMRG00000021177)	LTBP3 (ENSSMRG00000021178)	SIPA1 (ENSSMRG00000021179)	PCNX3 (ENSSMRG00000021180)	MAP3K11 (ENSSMRG00000021181)	ENSSMRG00000021182	EHBP1L1 (ENSSMRG00000021183)
Argentine black and white tegu	MODERN SPECIES	80	DRAP1 (ENSSMRG00000020367)	ENSSMRG00000020368	PELI3 (ENSSMRG00000020369)	DPP3 (ENSSMRG00000020370)	BBS1 (ENSSMRG00000020371)	ENSSMRG00000020372	ENSSMRG00000020374	FOSL1 (ENSSMRG00000020375)	CCDC85B (ENSSMRG00000020376)	FIBP (ENSSMRG00000020377)	EFEMP2 (ENSSMRG00000020378)	MUS81 (ENSSMRG00000020379)	CFL1 (ENSSMRG00000020380)	CD248 (ENSSMRG00000020381)	EEF1G (ENSSMRG00000020382) #21	ENSSMRG00000020384 #22	ENSSMRG00000020385 #22	SAC3D1 (ENSSMRG00000020386)	ARL2 (ENSSMRG00000020387)	SNX15 (ENSSMRG00000020388)	ENSSMRG00000020389	GPHA2 (ENSSMRG00000020392)	PPP2R5B (ENSSMRG00000020394)	ATG2A (ENSSMRG00000021175)	EHD1 (ENSSMRG00000021176)	MEN1 (ENSSMRG00000021177)	LTBP3 (ENSSMRG00000021178)	SIPA1 (ENSSMRG00000021179)	PCNX3 (ENSSMRG00000021180)	MAP3K11 (ENSSMRG00000021181)	ENSSMRG00000021182
Anura	ANCESTRAL SPECIES	169	ENSGT00940000156431	ENSGT00940000153377.B	ENSGT00940000156574.C	ENSGT00390000009663.g	ENSGT00510000049875 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000154348.c.a.b.a	ENSGT00940000159914 #20	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000156646	ENSGT00390000015119	ENSGT01000000214440.C	ENSGT00390000002089.a.a.b	ENSGT00390000007539.d
Frog	MODERN SPECIES	4	lrp5 (ENSXETG00000010024)	ENSXETG00000044443	ENSXETG00000047457	ubxn1 (ENSXETG00000005477) #10	lbhd1 (ENSXETG00000047364) #13	ENSXETG00000039364	ints5 (ENSXETG00000005580) #15	b3gat3 (ENSXETG00000005581) #16	rom1 (ENSXETG00000005582) #17	eml3 (ENSXETG00000005628) #18	ENSXETG00000043166	mta2 (ENSXETG00000005633) #19	ENSXETG00000005639	tut1 (ENSXETG00000005640) #20	eef1g (ENSXETG00000026372) #21	AHNAK (ENSXETG00000038117) #22	slc3a2 (ENSXETG00000019456)	stx5 (ENSXETG00000019453)	ENSXETG00000041844	nxf1 (ENSXETG00000019442)	wdr74 (ENSXETG00000019440)	atl3 (ENSXETG00000002686)	ENSXETG00000049358	htr6 (ENSXETG00000002694)	zfta (ENSXETG00000037021)	dusp10.2 (ENSXETG00000035848)	XB5901661 [provisional:rabepk] (ENSXETG00000032376)	mark2 (ENSXETG00000002704)	ENSXETG00000043061	rcor2 (ENSXETG00000002710)	naa40 (ENSXETG00000002713)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000021441 #7	TTC9C (ENSLLEG00000021818)	ENSLLEG00000021865	ENSLLEG00000021929	ZBTB3 (ENSLLEG00000021974)	POLR2G (ENSLLEG00000022011)	ENSLLEG00000022313	ENSLLEG00000026303	TAF6L (ENSLLEG00000026319)	TMEM223 (ENSLLEG00000026412)	MTA2 (ENSLLEG00000026576) #19	ENSLLEG00000027097	ENSLLEG00000027152	ENSLLEG00000027287 #21	ENSLLEG00000027500	AHNAK (ENSLLEG00000027522) #22	RPS6KA4 (ENSLLEG00000027560)	SLC3A2 (ENSLLEG00000027760)	WDR74 (ENSLLEG00000027938)	STX5 (ENSLLEG00000028044)	ENSLLEG00000028092	ENSLLEG00000028112	ENSLLEG00000028190	ENSLLEG00000028223	ENSLLEG00000028238	ENSLLEG00000028246	ENSLLEG00000028269	ENSLLEG00000028452	ENSLLEG00000028468	EML3 (ENSLLEG00000028548) #18	ROM1 (ENSLLEG00000028773) #17
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000017480	ENSLLEG00000017463	ENSLLEG00000017336	HNRNPLL (ENSLLEG00000017190)	GALM (ENSLLEG00000017038)	SRSF7 (ENSLLEG00000016692)	ENSLLEG00000016630	ENSLLEG00000016573	ENSLLEG00000016540	MORN2 (ENSLLEG00000016498)	DHX57 (ENSLLEG00000016262)	ARHGEF33 (ENSLLEG00000015486)	SOS1 (ENSLLEG00000014441)	RDH13 (ENSLLEG00000014327)	SLC30A6 (ENSLLEG00000014049)	ENSLLEG00000013962 #22	ENSLLEG00000013873	ENSLLEG00000013775	FEZ2 (ENSLLEG00000013635)	MAP4K3 (ENSLLEG00000012564)	TMEM178A (ENSLLEG00000012421)	THUMPD2 (ENSLLEG00000012323)	MTR (ENSLLEG00000011301)	ENSLLEG00000011202	CYP1B1 (ENSLLEG00000010720)	ENSLLEG00000010652	ENSLLEG00000010633	ENSLLEG00000010437	ENSLLEG00000009494	ENSLLEG00000009415	CDC42EP3 (ENSLLEG00000030024)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	410														ENSLACG00000001211	COG2 (ENSLACG00000001736)	ENSLACG00000005211 #22	mocs3 (ENSLACG00000008013)	ENSLACG00000009023	ENSLACG00000011315	ndufaf7 (ENSLACG00000012730)	CEBPZ (ENSLACG00000012928)	CEBPZOS (ENSLACG00000013186)	ENSLACG00000013791	ENSLACG00000014464	ENSLACG00000016000	SPRTN (ENSLACG00000016452)	MPC1 (ENSLACG00000016508)	IRF2BP2 (ENSLACG00000017164)
Coelacanth	MODERN SPECIES	225	PPP2R5E (ENSLACG00000017603)	WDR89 (ENSLACG00000017563)	SGPP1 (ENSLACG00000017505)	ENSLACG00000017306	ENSLACG00000016931	ESR2 (ENSLACG00000016807)	MTHFD1 (ENSLACG00000016521)	ZBTB25 (ENSLACG00000016433)	ZBTB1 (ENSLACG00000016384)	PPP1R36 (ENSLACG00000022594)	BTBD6 (ENSLACG00000016100)	BRF1 (ENSLACG00000015906)	NUDT14 (ENSLACG00000022411)	JAG2 (ENSLACG00000012867)	CDCA4 (ENSLACG00000010854)	ENSLACG00000008958 #22	PLD4 (ENSLACG00000008533)	CEP170B (ENSLACG00000007433)	ENSLACG00000006747	AKT1 (ENSLACG00000004447)	SIVA1 (ENSLACG00000003944)	ADSS1 (ENSLACG00000002126)	INF2 (ENSLACG00000000985)
Coelacanth	MODERN SPECIES	254	DPF2 (ENSLACG00000010180)	OTUB1 (ENSLACG00000010416)	ENSLACG00000022173	ENSLACG00000010718	slc8a4b (ENSLACG00000011133)	ACTA1 (ENSLACG00000012045)	NAA40 (ENSLACG00000012164)	RCOR2 (ENSLACG00000012299)	MARK2 (ENSLACG00000012526)	PLCB3 (ENSLACG00000013109)	PPP1R14B (ENSLACG00000013601)	FKBP2 (ENSLACG00000013806)	NUDT22 (ENSLACG00000013896)	ENSLACG00000022630	eef1g (ENSLACG00000014700) #21	ENSLACG00000015241 #22	ENSLACG00000022107	FLRT1 (ENSLACG00000016740)	ENSLACG00000016770	STIP1 (ENSLACG00000016815)	FERMT3 (ENSLACG00000016877)	TRPT1 (ENSLACG00000016922)	ENSLACG00000016948	rarres3l (ENSLACG00000016982)	KCNK4 (ENSLACG00000017130)	ENSLACG00000017213	CSKMT (ENSLACG00000017239) #12	INTS5 (ENSLACG00000017252) #14	GANAB (ENSLACG00000017273) #15	EML3 (ENSLACG00000017363) #18	MTA2 (ENSLACG00000017502) #19
Actinopterygii	ANCESTRAL SPECIES	73	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000157865	ENSGT00940000167863	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000008848	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000153968.a.b.a	ENSGT00420000029824	ENSGT00940000154906.C.d	ENSGT00940000160084	ENSGT01030000235112	ENSGT00940000154289.B	ENSGT00940000155507.a.b	ENSGT00940000161899	ENSGT00940000154209.a.b	ENSGT00940000156661
Neopterygii	ANCESTRAL SPECIES	81	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000157865	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000008848	ENSGT00390000014512	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000153968.a.b.a	ENSGT00420000029824	ENSGT00940000154906.C.d	ENSGT00940000160084	ENSGT01030000235112	ENSGT00940000154289.B	ENSGT00940000154209.a.b	ENSGT00940000156661	ENSGT00950000183122.A	ENSGT00390000000747
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	654	ENSLOCG00000016719	LRRC73 (ENSLOCG00000016718)	yipf3 (ENSLOCG00000016712)	polr1c (ENSLOCG00000016710)	fbxo28 (ENSLOCG00000016709)	degs1 (ENSLOCG00000016708)	nvl (ENSLOCG00000016706)	ENSLOCG00000016701	FAM98A (ENSLOCG00000016699)	rasgrp3 (ENSLOCG00000016689)	LTBP1 (ENSLOCG00000016686)	ttc27 (ENSLOCG00000016680)	BIRC6 (ENSLOCG00000016644)	yipf4 (ENSLOCG00000016640)	exo1 (ENSLOCG00000016639)	ENSLOCG00000016638 #22	ENSLOCG00000016636	ENSLOCG00000016635	mrpl4 (ENSLOCG00000016632)	arg1 (ENSLOCG00000016630)	heatr1 (ENSLOCG00000016628)	ENSLOCG00000016623	ENSLOCG00000016621	ACTN2 (ENSLOCG00000016619)	mtr (ENSLOCG00000016612)	RYR2 (ENSLOCG00000016594)	CHRM3 (ENSLOCG00000017368)	ENSLOCG00000016592	grem2b (ENSLOCG00000017367)	rgs7a (ENSLOCG00000016589)	fh (ENSLOCG00000016581)
Spotted gar	MODERN SPECIES	667	b4gat1 (ENSLOCG00000001655)	six7 (ENSLOCG00000001646)	ENSLOCG00000001634	ENSLOCG00000001626	ENSLOCG00000001609	actn3a (ENSLOCG00000001588)	prkd4 (ENSLOCG00000001570)	ENSLOCG00000001555	zdhhc24 (ENSLOCG00000001541)	pacs1a (ENSLOCG00000001515)	ENSLOCG00000001503	ENSLOCG00000001490	ENSLOCG00000001481	syvn1 (ENSLOCG00000001464)	ENSLOCG00000001445	ENSLOCG00000001394 #22	macrod1 (ENSLOCG00000001373)	fermt3b (ENSLOCG00000001364)	trpt1 (ENSLOCG00000001345)	ENSLOCG00000001327	adssl (ENSLOCG00000001306)	gng3 (ENSLOCG00000001294) #9	bscl2l (ENSLOCG00000001280) #8	nxf1a (ENSLOCG00000001254)	ENSLOCG00000001233	ENSLOCG00000001215	ENSLOCG00000001206	trmt112 (ENSLOCG00000001190)	ENSLOCG00000001175	stx5a (ENSLOCG00000001157)	nudt22 (ENSLOCG00000001142)
Spotted gar	MODERN SPECIES	673	ENSLOCG00000013068	btbd7 (ENSLOCG00000013073)	ubr7 (ENSLOCG00000013081)	si:dkeyp-55f12.3 (ENSLOCG00000013091)	tmem251 (ENSLOCG00000017714)	itpk1a (ENSLOCG00000013095)	chga (ENSLOCG00000013102)	ENSLOCG00000013113	sel1l (ENSLOCG00000013123)	ENSLOCG00000013136	ahsa1a (ENSLOCG00000013139)	vipas39 (ENSLOCG00000013144)	gpr132b (ENSLOCG00000017715)	cdca4 (ENSLOCG00000017716)	si:dkey-177p2.6 (ENSLOCG00000013156)	ENSLOCG00000013163 #22	DGLUCY (ENSLOCG00000013170)	GPR68 (ENSLOCG00000017717)	ccdc88c (ENSLOCG00000013183)	smek1 (ENSLOCG00000013202)	CATSPERB (ENSLOCG00000013209)	TC2N (ENSLOCG00000013220)	fbln5 (ENSLOCG00000013226)	trip11 (ENSLOCG00000013235)	golga5 (ENSLOCG00000013242)	lgmn (ENSLOCG00000013252)	nusap1 (ENSLOCG00000013267)	ndufaf1 (ENSLOCG00000013276)	rtf1 (ENSLOCG00000013279)	GANC (ENSLOCG00000013291)	ENSLOCG00000013311
Osteoglossocephalai	ANCESTRAL SPECIES	96	ENSGT00940000164045	ENSGT00390000003256	ENSGT00940000153766.A	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00940000157865	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000017746	ENSGT00940000157593	ENSGT00940000165789	ENSGT01030000234606.a.a.a.b	ENSGT00700000104522	ENSGT00940000161152	ENSGT00940000155068.a.b	ENSGT00510000048167.a	ENSGT00950000182805.a.b
Clupeocephala	ANCESTRAL SPECIES	167	ENSGT00940000164412.a.a.b	ENSGT00390000007683	ENSGT00390000014293.b	ENSGT00570000079168.b.b.a	ENSGT00950000183100.B	ENSGT00390000002970	ENSGT00390000013448.a.a	ENSGT00570000079239	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00390000017746	ENSGT00940000157593	ENSGT00700000104522	ENSGT01030000234606.a.a.a.b	ENSGT00940000161152	ENSGT00940000155068.a.b	ENSGT00510000048167.a	ENSGT00950000182805.a.b	ENSGT00940000154551.b	ENSGT00940000155139	ENSGT00940000154518.b	ENSGT00940000156925.v	ENSGT00940000158120	ENSGT01000000215701
Otomorpha	ANCESTRAL SPECIES	34	ENSGT00940000153899.a.a	ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00390000010669	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00710000106792	ENSGT00940000156123.b.b	ENSGT00940000159580
Clupeiformes	ANCESTRAL SPECIES	192		ENSGT01030000235165	ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00390000010669	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00710000106792	ENSGT00940000156123.b.b	ENSGT00940000159580
Atlantic herring	MODERN SPECIES	12	ENSCHAG00000002357	ENSCHAG00000002321	ENSCHAG00000002265	ENSCHAG00000002243	neurog1 (ENSCHAG00000002230)	ARAP3 (ENSCHAG00000001152)	ENSCHAG00000000554	tgfbi (ENSCHAG00000023860)	smad5 (ENSCHAG00000023838)	syvn1 (ENSCHAG00000023821)	gpr137 (ENSCHAG00000023814)	ENSCHAG00000023803	polr2g (ENSCHAG00000023794)	eef1g (ENSCHAG00000023739) #21	ENSCHAG00000023732	ENSCHAG00000023719 #22	klhl4 (ENSCHAG00000023590)	PCDH11Y (ENSCHAG00000023575)	ENSCHAG00000023567	TSC22D3 (ENSCHAG00000023557)	MID2 (ENSCHAG00000023113)	nek12 (ENSCHAG00000023088)	kif11 (ENSCHAG00000023033)	pin4 (ENSCHAG00000023021)	acsl4a (ENSCHAG00000022333)	nxt2 (ENSCHAG00000022296)	psmd10 (ENSCHAG00000022275)	ENSCHAG00000022266	xiap (ENSCHAG00000022233)	STAG2 (ENSCHAG00000020464)	thoc2 (ENSCHAG00000018329)
Otophysi	ANCESTRAL SPECIES	43	ENSGT00940000157425.A	ENSGT00940000157712	ENSGT00940000159747	ENSGT00940000158355	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00940000164810	ENSGT00940000158869	ENSGT00940000167363	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00390000008104	ENSGT00510000048574	ENSGT00940000166453.b	ENSGT01000000214440.C
Cyprinoidei	ANCESTRAL SPECIES	9	ENSGT00940000157712	ENSGT00940000159747.eb.b	ENSGT00940000159747.eb.a	ENSGT00940000158355	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437.ib.b	ENSGT00530000063860.a	ENSGT00940000164810	ENSGT00940000158869	ENSGT00940000167363	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00390000007135	ENSGT00940000164327.b	ENSGT01030000234566.e.b.a.b.c.a	ENSGT00940000161394
Zebrafish	MODERN SPECIES	2	ENSDARG00000115384	ENSDARG00000116818	ENSDARG00000116455	ENSDARG00000112443	ENSDARG00000110460	ENSDARG00000070812	krt95 (ENSDARG00000014356)	ENSDARG00000022334	npepps (ENSDARG00000044943)	mrpl45 (ENSDARG00000044942)	ENSDARG00000102310	socs7 (ENSDARG00000077018)	sp2 (ENSDARG00000076763)	zgc:64002 (ENSDARG00000086998)	ENSDARG00000077988	ENSDARG00000102146 #22	WIPF2 (ENSDARG00000045298)	ENSDARG00000058663	ENSDARG00000056838	cdc6 (ENSDARG00000009942)	jupa (ENSDARG00000070787)	ENSDARG00000074508	krt99 (ENSDARG00000019365)	krt15 (ENSDARG00000036840)	krt98 (ENSDARG00000044973)	krt94 (ENSDARG00000044975)	krt93 (ENSDARG00000044976)	ENSDARG00000112873	ENSDARG00000088552	ENSDARG00000094335	ENSDARG00000116521
Cyprininae	ANCESTRAL SPECIES	79	ENSGT00940000153986.b.b.a	ENSGT00940000157743.p	ENSGT00940000155437.ib.b	ENSGT00530000063860.a.j	ENSGT00940000164810.b	ENSGT00940000158869.o.b	ENSGT00940000167363.a	ENSGT00530000063860.a.i	ENSGT00940000164810.a	ENSGT00940000158869.o.a	ENSGT00940000167363.b	ENSGT00390000008975	ENSGT00390000007552.o.a #21	ENSGT00940000165073.a.a.l.a	ENSGT00390000007552.o.b #21	ENSGT00940000154902 #22	ENSGT00940000159818.n	ENSGT00940000158335.j	ENSGT00940000159818.m	ENSGT00940000158335.i	ENSGT00940000156656	ENSGT00940000159460.i	ENSGT00940000165959.a	ENSGT00510000047029.c.b	ENSGT00940000157427.j.a	ENSGT00940000153404.a.lb	ENSGT00940000166874.e	ENSGT00950000182972.a.a.a.a.a.e.b	ENSGT00390000007135.f	ENSGT00940000164327.b.d	ENSGT01030000234566.e.b.a.b.c.a.`b
Cyprininae_a	ANCESTRAL SPECIES	104	ENSGT00940000157712.k	ENSGT00940000159747.eb.b.a	ENSGT00940000158355.e	ENSGT00950000183059.a.c	ENSGT00940000153986.b.b.b	ENSGT00940000157743.o	ENSGT00940000155437.ib.a	ENSGT00530000063860.a.i	ENSGT00940000164810.a	ENSGT00940000158869.o.a	ENSGT00940000167363.b	ENSGT00390000008975	ENSGT00390000007552.p #21	ENSGT00940000165073.a.a.l.b	ENSGT00390000007552.o.b #21	ENSGT00940000154902 #22	ENSGT00940000159818.n	ENSGT00940000158335.j	ENSGT00940000159818.m	ENSGT00940000158335.i	ENSGT00940000156656	ENSGT00940000159460.j	ENSGT00940000165959.b	ENSGT00510000047029.c.a	ENSGT00940000157427.j.b	ENSGT00940000156381	ENSGT00940000153404.a.mb	ENSGT00940000166874.f	ENSGT00950000182972.a.a.a.a.a.e.a	ENSGT00390000007135.e	ENSGT00940000164327.b.c
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	878	tmed9 (ENSSGRG00000026755)	ENSSGRG00000026756	ENSSGRG00000026757	lman2 (ENSSGRG00000026758)	ENSSGRG00000026768	gpr137 (ENSSGRG00000026770)	syvn1 (ENSSGRG00000026786)	smad5 (ENSSGRG00000027263)	tgfbi (ENSSGRG00000027323)	ENSSGRG00000027408	ENSSGRG00000027436	neurog1 (ENSSGRG00000027577)	polr2g (ENSSGRG00000027580)	eef1g (ENSSGRG00000027622) #21	ENSSGRG00000027770	ENSSGRG00000027771 #22	klhl4 (ENSSGRG00000027773)
Golden-line barbel	MODERN SPECIES	249	b4galt7 (ENSSGRG00000020223)	tmed9 (ENSSGRG00000020222)	ENSSGRG00000020221	ENSSGRG00000020076	gpr137 (ENSSGRG00000020071)	syvn1 (ENSSGRG00000020042)	ENSSGRG00000020036	ENSSGRG00000020035	tgfbi (ENSSGRG00000019758)	ENSSGRG00000019755	ENSSGRG00000019563	neurog1 (ENSSGRG00000019554)	polr2g (ENSSGRG00000019548)	eef1g (ENSSGRG00000019526) #21	ENSSGRG00000019524	ENSSGRG00000019517 #22	ENSSGRG00000019511
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	35	b4galt7 (ENSCCRG00000001570)	ENSCCRG00000053896	lman2 (ENSCCRG00000001683)	ENSCCRG00000028346	gpr137 (ENSCCRG00000022573)	syvn1 (ENSCCRG00000028362)	smad5 (ENSCCRG00000081851)	tgfbi (ENSCCRG00000006206)	ENSCCRG00000006286	ENSCCRG00000006708	neurog1 (ENSCCRG00000064304)	polr2g (ENSCCRG00000007324)	eef1g (ENSCCRG00000006688) #21	ENSCCRG00000078892	ENSCCRG00000052237	ENSCCRG00000039785 #22	klhl4 (ENSCCRG00000006683)	ENSCCRG00000035361	ENSCCRG00000070900	ENSCCRG00000067947	nek12 (ENSCCRG00000063486)	acsl4a (ENSCCRG00000057379)	psmd10 (ENSCCRG00000024270)	xiap (ENSCCRG00000070329)	ENSCCRG00000005197	hmmr (ENSCCRG00000005489)	insb (ENSCCRG00000027564)	ENSCCRG00000042371	ENSCCRG00000053874	zgc:153146 (ENSCCRG00000078390)	pdlim3b (ENSCCRG00000054628)
Common carp reference	MODERN SPECIES	20	gm2a (ENSCCRG00000076179)	emx3 (ENSCCRG00000082787)	b4galt7 (ENSCCRG00000073337)	tmed9 (ENSCCRG00000001604)	lman2 (ENSCCRG00000056551)	ENSCCRG00000039346	gpr137 (ENSCCRG00000063404)	syvn1 (ENSCCRG00000022570)	smad5 (ENSCCRG00000006190)	tgfbi (ENSCCRG00000028420)	ENSCCRG00000029042	ENSCCRG00000029064	neurog1 (ENSCCRG00000057953)	polr2g (ENSCCRG00000026502)	eef1g (ENSCCRG00000026445) #21	ENSCCRG00000056765 #22	klhl4 (ENSCCRG00000052220)	ENSCCRG00000041569	ENSCCRG00000077164	ENSCCRG00000072443	nek12 (ENSCCRG00000061803)	pin4 (ENSCCRG00000046373)	acsl4a (ENSCCRG00000061078)	nxt2 (ENSCCRG00000046946)	psmd10 (ENSCCRG00000080304)	xiap (ENSCCRG00000024279)	ENSCCRG00000078311	insb (ENSCCRG00000005477)	ENSCCRG00000059919	zgc:153146 (ENSCCRG00000047679)	pdlim3b (ENSCCRG00000047676)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1488														sp2 (ENSCARG00000037332)	ENSCARG00000037389	ENSCARG00000037418 #22	WIPF2 (ENSCARG00000037432)	cdc6 (ENSCARG00000037448)	jupa (ENSCARG00000037536)
Goldfish	MODERN SPECIES	32	f9a (ENSCARG00000052987)	ENSCARG00000053026	ENSCARG00000053144	TENM2 (ENSCARG00000053179)	ENSCARG00000053990	zgc:153146 (ENSCARG00000054033)	pdlim3b (ENSCARG00000054104)	SORBS2 (ENSCARG00000054221)	ENSCARG00000054348	cyp4v2b (ENSCARG00000054389)	TSC22D3 (ENSCARG00000054463)	MID2 (ENSCARG00000054503)	polr2g (ENSCARG00000054519)	eef1g (ENSCARG00000054538) #21	ENSCARG00000054603	ENSCARG00000054648 #22	klhl4 (ENSCARG00000054716)	ENSCARG00000054950	ENSCARG00000055668	tgfbi (ENSCARG00000055704)	smad5 (ENSCARG00000055822)	syvn1 (ENSCARG00000055876)	gpr137 (ENSCARG00000055956)	ENSCARG00000055982	lman2 (ENSCARG00000056024)	tmed9 (ENSCARG00000056412)	b4galt7 (ENSCARG00000056461)	emx3 (ENSCARG00000056500)	ENSCARG00000056521	ENSCARG00000056548	FAT2 (ENSCARG00000056639)
Characiphysae	ANCESTRAL SPECIES	7	ENSGT00940000157425.A	ENSGT00940000157712	ENSGT00940000159747	ENSGT00940000158355	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00940000164810	ENSGT00940000158869	ENSGT00940000167363	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT01030000234518.A.a.b	ENSGT00950000182859.A.a.b.b.d.a	ENSGT00940000155650.a.b	ENSGT00940000161042
Characiphysae_b	DUPLICATION
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	53	ENSGT01010000222287.B.a.a.a.a.a.a	ENSGT00940000155989.e.a	ENSGT00940000153956.a.b	ENSGT00940000155896.k	ENSGT00940000155648.B.b	ENSGT00940000154372.b	ENSGT00940000157037.b.b.b	ENSGT00940000156410.h	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902.nb.a #22	ENSGT00940000165200	ENSGT00940000155129.A.b	ENSGT00940000155129.A.a	ENSGT00390000001878	ENSGT00940000154987.i.b.a.a	ENSGT00940000154987.j	ENSGT00390000007701	ENSGT00390000007551	ENSGT00940000165311.b.a.a	ENSGT00940000165311.b.a.b	ENSGT00940000154922.b.u.a	ENSGT00940000154922.b.v.a	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.u.b.b	ENSGT00940000161321
Characoidei	ANCESTRAL SPECIES	63	ENSGT01010000222287.B.a.a.a.a.a.a	ENSGT00940000155989.e.a	ENSGT00940000153956.a.b	ENSGT00940000155896.k	ENSGT00940000155648.B.b	ENSGT00940000154372.b	ENSGT00940000157037.b.b.b	ENSGT00940000156410.h	ENSGT00440000037341.a	ENSGT00940000158843	ENSGT00940000155823.B	ENSGT00500000044929	ENSGT00940000156126	ENSGT00940000153168.B	ENSGT00510000047676	ENSGT00940000154902.nb.a #22	ENSGT00940000165200	ENSGT00940000155129.A.a	ENSGT00390000001878	ENSGT00940000154987.i.b.a.a	ENSGT00940000154987.j	ENSGT00390000007701	ENSGT00390000007551	ENSGT00940000165311.b.a.b	ENSGT00940000154922.b.u.a	ENSGT00940000154922.b.v.a	ENSGT00940000154922.b.u.b.a	ENSGT00940000154922.b.u.b.b	ENSGT00940000161321	ENSGT00940000158550	ENSGT00530000063629.a
Red-bellied piranha	MODERN SPECIES	84	pank1a (ENSPNAG00000010982)	ENSPNAG00000011007	ANKRD1 (ENSPNAG00000011047)	pcgf5a (ENSPNAG00000011073)	ppp1r3ca (ENSPNAG00000011080)	ENSPNAG00000011089	ENSPNAG00000005452	ENSPNAG00000011133	FAM98A (ENSPNAG00000011154)	rasgrp3 (ENSPNAG00000011190)	LTBP1 (ENSPNAG00000011247)	ttc27 (ENSPNAG00000011312)	BIRC6 (ENSPNAG00000011506)	yipf4 (ENSPNAG00000011522)	exo1 (ENSPNAG00000001780)	ENSPNAG00000001787 #22	ENSPNAG00000011546	slc8a1b (ENSPNAG00000011564)	mrps5 (ENSPNAG00000011574)	malb (ENSPNAG00000001802)	ENSPNAG00000001806	nphp1 (ENSPNAG00000011598)	MTLN (ENSPNAG00000011607)	ENSPNAG00000011618	ENSPNAG00000011638	slc22a7b.1 (ENSPNAG00000001848)	ENSPNAG00000001864	ENSPNAG00000011717	ENSPNAG00000011878	acss1 (ENSPNAG00000011917)	hhat (ENSPNAG00000011966)
Mexicana tetra	MODERN SPECIES	24	PDZD8 (ENSAMXG00000016313)	pex13 (ENSAMXG00000010724)	SANBR (ENSAMXG00000001065)	ENSAMXG00000029882	ENSAMXG00000012704	ENSAMXG00000033040	ENSAMXG00000006805	pgrmc2 (ENSAMXG00000034920)	asmt2 (ENSAMXG00000017811)	ENSAMXG00000030556	jade1 (ENSAMXG00000017786)	si:dkey-221l4.10 (ENSAMXG00000028340)	BIRC6 (ENSAMXG00000010869)	yipf4 (ENSAMXG00000010903)	exo1 (ENSAMXG00000010918)	ENSAMXG00000010932 #22	ENSAMXG00000010935	HTR7 (ENSAMXG00000040600)	zgc:65997 (ENSAMXG00000038112)	pank1a (ENSAMXG00000010968)	SLC16A12 (ENSAMXG00000010978)	ENSAMXG00000041395	ENSAMXG00000034893	papss2a (ENSAMXG00000010997)	minpp1a (ENSAMXG00000011005)	minpp1a (ENSAMXG00000040249)	ENSAMXG00000011027	selenon (ENSAMXG00000011032)	znf593 (ENSAMXG00000039647)	morn2 (ENSAMXG00000039447)	ENSAMXG00000011063
Electric eel	MODERN SPECIES	1050																ENSEEEG00000016137 #22	ENSEEEG00000016138	ENSEEEG00000016140
Characiphysae_b	ANCESTRAL SPECIES	27	ENSGT00940000154290.a.f	ENSGT00940000154296.a	ENSGT01030000234559.a.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00950000182970.A.b	ENSGT00940000155463	ENSGT00940000154748.C	ENSGT00950000183152.A	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00940000154902.nb.b #22	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT01090000260683	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00390000018879	ENSGT00390000014512	ENSGT00390000008848	ENSGT00940000157935.a	ENSGT00940000154406	ENSGT00390000013639
Characoidei	ANCESTRAL SPECIES	16	ENSGT01030000234559.a.b	ENSGT00940000159329	ENSGT00390000000732	ENSGT00950000182970.A.b	ENSGT00940000155463	ENSGT00940000154748.C	ENSGT00950000183152.A	ENSGT00970000193372.a.a	ENSGT00940000161181.d	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00940000154902.nb.b #22	ENSGT00940000155557.jc.b	ENSGT00530000063498.A	ENSGT00940000156395.e	ENSGT00940000162183	ENSGT01090000260683	ENSGT00950000182969.B.c.b	ENSGT00950000182969.B.c.a.a.b.a.b	ENSGT00950000182969.B.c.a.a.a	ENSGT00940000155258	ENSGT00390000018879	ENSGT00390000014512	ENSGT00390000008848	ENSGT00940000157935.a	ENSGT00940000154406	ENSGT00390000013639
Mexicana tetra	MODERN SPECIES	20	btf3l4 (ENSAMXG00000029439)	ptgfr (ENSAMXG00000018613)	chrna4b (ENSAMXG00000018597)	zgpat (ENSAMXG00000018583)	rtel1 (ENSAMXG00000018571)	txlng (ENSAMXG00000018555)	rbb4l (ENSAMXG00000018532)	ZRSR2 (ENSAMXG00000018502)	ap1s2 (ENSAMXG00000031582)	npepps (ENSAMXG00000018441)	mrpl45 (ENSAMXG00000018409)	ENSAMXG00000040159	socs7 (ENSAMXG00000018378)	sp2 (ENSAMXG00000041753)	ENSAMXG00000018370	ENSAMXG00000039084 #22	WIPF2 (ENSAMXG00000018361)	cdc6 (ENSAMXG00000018360)	jupa (ENSAMXG00000018337)	ENSAMXG00000018307	ENSAMXG00000031708	krt99 (ENSAMXG00000018295)	krt15 (ENSAMXG00000019672)	krt15 (ENSAMXG00000032213)	krt98 (ENSAMXG00000034483)	krt94 (ENSAMXG00000005194)	ENSAMXG00000018283	fgf22 (ENSAMXG00000042459)	POLRMT (ENSAMXG00000018258)	HCN2 (ENSAMXG00000018236)	bsg (ENSAMXG00000018222)
Characiphysae_b	ANCESTRAL SPECIES	7	ENSGT00940000157425.A	ENSGT00940000157712	ENSGT00940000159747	ENSGT00940000158355	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00940000164810	ENSGT00940000158869	ENSGT00940000167363	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902.ob #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00950000182859.A.a.b.b.d.a	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	305										KLHL10 (ENSEEEG00000017150)	mrpl45 (ENSEEEG00000017145)	ENSEEEG00000017142	socs7 (ENSEEEG00000017141)	sp2 (ENSEEEG00000017137)	ENSEEEG00000017134	ENSEEEG00000017132 #22	ENSEEEG00000017129	cdc6 (ENSEEEG00000017128)	jupa (ENSEEEG00000014990)	ENSEEEG00000014954	ENSEEEG00000014952	krt99 (ENSEEEG00000014947)	krt15 (ENSEEEG00000014923)	krt94 (ENSEEEG00000014922)	zgc:77929 (ENSEEEG00000014919)	mrpl4 (ENSEEEG00000014914)	ENSEEEG00000014911	ptp4a1 (ENSEEEG00000014879)	myom2a (ENSEEEG00000014698)	LY75 (ENSEEEG00000014646)	PLA2R1 (ENSEEEG00000014630)
Electric eel	MODERN SPECIES	12	foxh1 (ENSEEEG00000017920)	oplah (ENSEEEG00000017910)	stat5b (ENSEEEG00000017890)	ghdc (ENSEEEG00000017867)	KCNH4 (ENSEEEG00000017863)	RAB5C (ENSEEEG00000017790)	ENSEEEG00000017789	ENSEEEG00000017788	ENSEEEG00000017186	ACLY (ENSEEEG00000017066)	klhl11 (ENSEEEG00000017059)	fkbp10b (ENSEEEG00000017039)	GPT (ENSEEEG00000016897)	eef1g (ENSEEEG00000016854) #21	ENSEEEG00000016847	ENSEEEG00000016843 #22	klhl4 (ENSEEEG00000016835)	ENSEEEG00000016831	PCDH11Y (ENSEEEG00000016829)	TSC22D3 (ENSEEEG00000016828)	MID2 (ENSEEEG00000016758)	nek12 (ENSEEEG00000016753)	pin4 (ENSEEEG00000016752)	acsl4a (ENSEEEG00000016749)	nxt2 (ENSEEEG00000016748)	psmd10 (ENSEEEG00000016747)	xiap (ENSEEEG00000016746)	STAG2 (ENSEEEG00000016617)	tcerg1a (ENSEEEG00000016575)	GPR151 (ENSEEEG00000016573)	PPP2R2B (ENSEEEG00000016514)
Characoidei	ANCESTRAL SPECIES	2	ENSGT00940000157425.A	ENSGT00940000157712	ENSGT00940000159747	ENSGT00940000158355	ENSGT00950000183059.a	ENSGT00940000153986.b.b	ENSGT00940000157743	ENSGT00940000155437	ENSGT00530000063860.a	ENSGT00940000164810	ENSGT00940000158869	ENSGT00940000167363	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902.ob #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00940000165959	ENSGT00510000047029	ENSGT00940000157427.j	ENSGT00940000156381	ENSGT00940000153404.a	ENSGT00940000166874	ENSGT00950000182972.a.a.a.a.a.e	ENSGT00940000155650.a.b	ENSGT00940000161042	ENSGT00940000157770	ENSGT01030000234518.A.a.b
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	279	btf3l4 (ENSPNAG00000012839)	ptgfr (ENSPNAG00000012814)	chrna4b (ENSPNAG00000012801)	zgpat (ENSPNAG00000012769)	rtel1 (ENSPNAG00000012695)	txlng (ENSPNAG00000002236)	rbb4l (ENSPNAG00000012314)	ZRSR2 (ENSPNAG00000012282)	ap1s2 (ENSPNAG00000012260)	npepps (ENSPNAG00000012234)	mrpl45 (ENSPNAG00000012194)	ENSPNAG00000002143	socs7 (ENSPNAG00000002131)	sp2 (ENSPNAG00000002098)	ENSPNAG00000012071	ENSPNAG00000012011 #22	ENSPNAG00000011994	cdc6 (ENSPNAG00000002042)	jupa (ENSPNAG00000002016)	ENSPNAG00000011893	ENSPNAG00000001969	krt99 (ENSPNAG00000001965)	krt15 (ENSPNAG00000011824)	krt98 (ENSPNAG00000011817)	krt94 (ENSPNAG00000001937)	zgc:77929 (ENSPNAG00000011798)	mrpl4 (ENSPNAG00000011785)	ENSPNAG00000001925	ENSPNAG00000001921	ptp4a1 (ENSPNAG00000001910)	lgsn (ENSPNAG00000011744)
Red-bellied piranha	MODERN SPECIES	14	ENSPNAG00000006096	emx3 (ENSPNAG00000007051)	b4galt7 (ENSPNAG00000024930)	tmed9 (ENSPNAG00000024939)	lman2 (ENSPNAG00000006253)	ENSPNAG00000025026	gpr137 (ENSPNAG00000025039)	syvn1 (ENSPNAG00000003864)	smad5 (ENSPNAG00000025079)	tgfbi (ENSPNAG00000025091)	ENSPNAG00000003872	ARAP3 (ENSPNAG00000025160)	neurog1 (ENSPNAG00000025176)	polr2g (ENSPNAG00000025210)	eef1g (ENSPNAG00000025293) #21	AHNAK (ENSPNAG00000007071) #22	klhl4 (ENSPNAG00000025398)	PCDH11Y (ENSPNAG00000025447)	TSC22D3 (ENSPNAG00000025489)	MID2 (ENSPNAG00000003941)	nek12 (ENSPNAG00000025662)	pin4 (ENSPNAG00000025676)	acsl4a (ENSPNAG00000025747)	nxt2 (ENSPNAG00000025785)	psmd10 (ENSPNAG00000007130)	xiap (ENSPNAG00000025816)	STAG2 (ENSPNAG00000026034)	tcerg1a (ENSPNAG00000026207)	GPR151 (ENSPNAG00000026230)	ENSPNAG00000026251	PPP2R2B (ENSPNAG00000026371)
Red-bellied piranha	MODERN SPECIES	10	DHX57 (ENSPNAG00000030009)	galm (ENSPNAG00000030001)	atl2 (ENSPNAG00000029989)	ENSPNAG00000029973	hells (ENSPNAG00000029968)	ENSPNAG00000006895	ENSPNAG00000029953	macroh2a2 (ENSPNAG00000029946)	GBF1 (ENSPNAG00000029938)	pitx3 (ENSPNAG00000029928)	PNLIPRP2 (ENSPNAG00000029920)	gins1 (ENSPNAG00000029876)	ninl (ENSPNAG00000029902)	AIFM2 (ENSPNAG00000029863)	ENSPNAG00000029857	ENSPNAG00000004680 #22	ENSPNAG00000029833	ENSPNAG00000029830	ENSPNAG00000029823	ENSPNAG00000029810	ENSPNAG00000029805	exoc3l4 (ENSPNAG00000004678)	ENSPNAG00000029768	EIF5 (ENSPNAG00000029712)	mark3a (ENSPNAG00000029687)	ckba (ENSPNAG00000004654)	trmt61a (ENSPNAG00000029500)	bag5 (ENSPNAG00000029483)	coa8 (ENSPNAG00000004611)	klc1a (ENSPNAG00000004610)	ttl (ENSPNAG00000005397)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	16	ENSAMXG00000043673	lman2 (ENSAMXG00000029169)	ENSAMXG00000010972	gpr137 (ENSAMXG00000029581)	syvn1 (ENSAMXG00000003339)	smad5 (ENSAMXG00000010992)	tgfbi (ENSAMXG00000011006)	ENSAMXG00000041017	ARAP3 (ENSAMXG00000011055)	neurog1 (ENSAMXG00000024953)	ENSAMXG00000042092	polr2g (ENSAMXG00000030439)	eef1g (ENSAMXG00000040220) #21	ENSAMXG00000037163	ENSAMXG00000030906 #22	ENSAMXG00000030707 #22	klhl4 (ENSAMXG00000011138)	ENSAMXG00000039191	ENSAMXG00000002021	tdg.1 (ENSAMXG00000029149)	TDG (ENSAMXG00000002041)	uqcc6 (ENSAMXG00000040996)	NT5DC3 (ENSAMXG00000033802)	ENSAMXG00000002058	ENSAMXG00000002068	ENSAMXG00000002072	met (ENSAMXG00000002094)	PCDH1 (ENSAMXG00000002124)	ENSAMXG00000038380	ENSAMXG00000029582	ENSAMXG00000031625
Mexicana tetra	MODERN SPECIES	16	tmed9 (ENSAMXG00000010940)	ENSAMXG00000043673	lman2 (ENSAMXG00000029169)	ENSAMXG00000010972	gpr137 (ENSAMXG00000029581)	syvn1 (ENSAMXG00000003339)	smad5 (ENSAMXG00000010992)	tgfbi (ENSAMXG00000011006)	ENSAMXG00000041017	ARAP3 (ENSAMXG00000011055)	neurog1 (ENSAMXG00000024953)	ENSAMXG00000042092	polr2g (ENSAMXG00000030439)	eef1g (ENSAMXG00000040220) #21	ENSAMXG00000037163	ENSAMXG00000030906 #22	ENSAMXG00000030707 #22	klhl4 (ENSAMXG00000011138)	ENSAMXG00000039191	ENSAMXG00000002021	tdg.1 (ENSAMXG00000029149)	TDG (ENSAMXG00000002041)	uqcc6 (ENSAMXG00000040996)	NT5DC3 (ENSAMXG00000033802)	ENSAMXG00000002058	ENSAMXG00000002068	ENSAMXG00000002072	met (ENSAMXG00000002094)	PCDH1 (ENSAMXG00000002124)	ENSAMXG00000038380	ENSAMXG00000029582
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	1	LY75 (ENSIPUG00000010378)	myom2a (ENSIPUG00000011210)	lgsn (ENSIPUG00000011476)	ptp4a1 (ENSIPUG00000011506)	col9a1a (ENSIPUG00000011540)	hyls1 (ENSIPUG00000011679)	mrpl4 (ENSIPUG00000011705)	zgc:77929 (ENSIPUG00000011785)	ENSIPUG00000011799	npepps (ENSIPUG00000011828)	mrpl45 (ENSIPUG00000011882)	ENSIPUG00000011899	socs7 (ENSIPUG00000011937)	sp2 (ENSIPUG00000012013)	abcc10 (ENSIPUG00000012074)	ENSIPUG00000012295 #22	WIPF2 (ENSIPUG00000012308)	cdc6 (ENSIPUG00000012345)	jupa (ENSIPUG00000012370)	ENSIPUG00000012460	ENSIPUG00000012522	krt99 (ENSIPUG00000012554)	krt15 (ENSIPUG00000012578)	krt98 (ENSIPUG00000012588)	krt94 (ENSIPUG00000012605)	AP1S2 (ENSIPUG00000012616)	ZRSR2 (ENSIPUG00000012642)	rbbp7 (ENSIPUG00000012670)	txlng (ENSIPUG00000012738)	ENSIPUG00000012753	ENSIPUG00000012780
Channel catfish	MODERN SPECIES	28	LTBP1 (ENSIPUG00000017869)	ttc27 (ENSIPUG00000017965)	ENSIPUG00000017982	SGMS1 (ENSIPUG00000017991)	minpp1a (ENSIPUG00000018005)	ENSIPUG00000018017	fas (ENSIPUG00000018072)	SLC16A12 (ENSIPUG00000018118)	pank1a (ENSIPUG00000018133)	ENSIPUG00000018148	ENSIPUG00000018156	ENSIPUG00000018208	BIRC6 (ENSIPUG00000018224)	yipf4 (ENSIPUG00000018317)	exo1 (ENSIPUG00000018328)	ENSIPUG00000018358 #22	ENSIPUG00000018388	ENSIPUG00000018391	mrps5 (ENSIPUG00000018395)	malb (ENSIPUG00000018407)	ENSIPUG00000018415	ENSIPUG00000018424	nphp1 (ENSIPUG00000018431)	MTLN (ENSIPUG00000018471)	slc8a1b (ENSIPUG00000018476)	ENSIPUG00000018482	ENSIPUG00000003272	ENSIPUG00000003286	Crip2 (ENSIPUG00000003292)	acss1 (ENSIPUG00000003311)	hhat (ENSIPUG00000003367)
Channel catfish	MODERN SPECIES	27	ENSIPUG00000000995	b4galt7 (ENSIPUG00000000943)	tmed9 (ENSIPUG00000000938)	lman2 (ENSIPUG00000000893)	ENSIPUG00000000877	gpr137 (ENSIPUG00000000866)	syvn1 (ENSIPUG00000000845)	smad5 (ENSIPUG00000000837)	tgfbi (ENSIPUG00000000799)	ENSIPUG00000000787	Arap3 (ENSIPUG00000000686)	neurog1 (ENSIPUG00000000679)	polr2g (ENSIPUG00000000671)	eef1g (ENSIPUG00000000647) #21	ENSIPUG00000000636	ENSIPUG00000000628 #22	klhl4 (ENSIPUG00000000619)	PCDH11Y (ENSIPUG00000000605)	ENSIPUG00000000587	TSC22D3 (ENSIPUG00000000571)	mid2 (ENSIPUG00000000550)	nek12 (ENSIPUG00000000543)	pin4 (ENSIPUG00000000539)	Acsl4 (ENSIPUG00000000524)	nxt2 (ENSIPUG00000000517)	psmd10 (ENSIPUG00000000509)	xiap (ENSIPUG00000000502)	xiap (ENSIPUG00000000501)	stag2 (ENSIPUG00000000475)	GPR151 (ENSIPUG00000000470)	tcerg1a (ENSIPUG00000000459)
Euteleosteomorpha	ANCESTRAL SPECIES	228			ENSGT00940000153322.B.d.a	ENSGT00390000017284.b	ENSGT00940000167363	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00970000197172	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT01060000253364
Protacanthopterygii	ANCESTRAL SPECIES	62												ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00970000197172	ENSGT00940000159818.g	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00970000193390.c.a.a.b	ENSGT00390000017153.b	ENSGT00940000164978.a	ENSGT00940000158770	ENSGT00510000046908.a.a.a	ENSGT00940000165034	ENSGT00940000176927	ENSGT00940000153986.b.b	ENSGT00940000157743
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	100	ENSGT00950000182969.B.c.b.c.b	ENSGT00990000205417.a.a	ENSGT00940000162183.e.b.b	ENSGT00990000205417.b	ENSGT00940000162183.e.b.a.a	ENSGT00940000156395.e.e	ENSGT00530000063498.A.o	ENSGT00940000155557.jc.b.f	ENSGT00390000018879.c.b	ENSGT00940000155246.r.b	ENSGT00390000012679.h	ENSGT00940000160776.l	ENSGT00940000156314.b.b	ENSGT00940000159590	ENSGT00940000164531.g	ENSGT00940000154902.sb #22	ENSGT00940000164531.h	ENSGT00390000014512.f.a	ENSGT00390000008848.k	ENSGT00940000157935.a.d	ENSGT00390000014512.f.b	ENSGT00390000008848.l	ENSGT00940000157935.a.c	ENSGT00940000154406	ENSGT00390000013639.c	ENSGT00940000157889.g.b.a	ENSGT00940000157057.e.g	ENSGT00950000182787.A.a.d.a	ENSGT00940000160859.a	ENSGT00940000159781.b.f	ENSGT00940000156644.e.a.h
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	12489																ENSHHUG00000016392 #22
Huchen	MODERN SPECIES	9694																ENSHHUG00000007589 #22
Huchen	MODERN SPECIES	237	krt15 (ENSHHUG00000036370)	krt99 (ENSHHUG00000036544)	ENSHHUG00000036564	krt99 (ENSHHUG00000036567)	ENSHHUG00000036571	jupa (ENSHHUG00000036613)	cdc6 (ENSHHUG00000036634)	WIPF2 (ENSHHUG00000036640)	zgc:77929 (ENSHHUG00000036643)	npepps (ENSHHUG00000036649)	mrpl45 (ENSHHUG00000036830)	ENSHHUG00000036838	socs7 (ENSHHUG00000036867)	sp2 (ENSHHUG00000036889)	ENSHHUG00000036899	ENSHHUG00000037092 #22	mrpl4 (ENSHHUG00000037125)	ENSHHUG00000037168	ENSHHUG00000037176	ENSHHUG00000037212	ptp4a1 (ENSHHUG00000037221)	lgsn (ENSHHUG00000037257)	ENSHHUG00000037270	myom2a (ENSHHUG00000037276)	ENSHHUG00000037423	ENSHHUG00000037427	ENSHHUG00000037465	ENSHHUG00000038924	dla (ENSHHUG00000038935)	RHOU (ENSHHUG00000038957)	CCSAP (ENSHHUG00000038963)
Salmoninae_a	ANCESTRAL SPECIES	82	ENSGT00990000206930	ENSGT00950000182969.B.c.a.a.b.a.b.m.b.a.b	ENSGT00950000182969.B.c.b.c.b	ENSGT00990000205417.a.a	ENSGT00940000162183.e.b.a.a	ENSGT00940000156395.e.e	ENSGT00530000063498.A.o	ENSGT00940000155557.jc.b.f	ENSGT00390000018879.c.b	ENSGT00940000155246.r.b	ENSGT00390000012679.h	ENSGT00940000160776.l	ENSGT00940000156314.b.b	ENSGT00940000159590.p	ENSGT00940000164531.g	ENSGT00940000154902.sb #22	ENSGT00390000014512.f.b	ENSGT00390000008848.k.a	ENSGT00940000157935.a.d	ENSGT00940000159590.o	ENSGT00940000164531.h	ENSGT00390000014512.f.a	ENSGT00390000008848.k.b	ENSGT00940000157935.a.c	ENSGT00940000154406.c	ENSGT00390000013639.c	ENSGT00940000157889.g.b.a	ENSGT00940000157057.e.g	ENSGT01030000234599.a.a.ab.b	ENSGT00950000182787.A.a.d.a	ENSGT00940000160859.a
Salmo	ANCESTRAL SPECIES	37	ENSGT00950000182969.B.c.a.a.b.a.b.m.b.a.a.a	ENSGT00950000182969.B.c.a.a.b.a.b.m.a	ENSGT00950000182969.B.c.b.c.b	ENSGT00990000205417.a.a	ENSGT00940000162183.e.b.b	ENSGT00940000156395.e.e	ENSGT00530000063498.A.o	ENSGT00940000155557.jc.b.f	ENSGT00390000018879.c.b	ENSGT00940000155246.r.b	ENSGT00390000012679.h	ENSGT00940000160776.l	ENSGT00940000156314.b.b	ENSGT00940000159590.p	ENSGT00940000164531.g	ENSGT00940000154902.sb #22	ENSGT00390000014512.f.b	ENSGT00390000008848.l	ENSGT00390000008848.k.a	ENSGT00940000157935.a.d	ENSGT00940000154406.d	ENSGT00390000013639.d	ENSGT00940000157889.g.b.b	ENSGT00940000157057.e.h	ENSGT01030000234599.a.a.ab.a	ENSGT00950000182787.A.a.d.b	ENSGT00940000160859.b	ENSGT00940000159781.b.e	ENSGT00940000156644.e.a.g	ENSGT00390000003512.r.d	ENSGT00940000156048.e.b.a.b.b
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000100598	krt99 (ENSSSAG00000045036)	ENSSSAG00000053114	ENSSSAG00000044165	PLAK (ENSSSAG00000041828)	cdc6 (ENSSSAG00000041769)	ENSSSAG00000041756	ENSSSAG00000041744	ENSSSAG00000040996	mrpl45 (ENSSSAG00000040904)	ENSSSAG00000092308	socs7 (ENSSSAG00000040368)	sp2 (ENSSSAG00000040293)	ENSSSAG00000016022	ENSSSAG00000081786 #22	ENSSSAG00000093318 #22	RM04 (ENSSSAG00000057361)	ENSSSAG00000101448	col9a1a (ENSSSAG00000015756)	tp4a1 (ENSSSAG00000015747)	lgsn (ENSSSAG00000015736)	ENSSSAG00000103185	ENSSSAG00000120680	ENSSSAG00000094621	ENSSSAG00000007744	myom2a (ENSSSAG00000119139)	ENSSSAG00000083618	dla (ENSSSAG00000007717)	RHOU (ENSSSAG00000007710)	CCSAP (ENSSSAG00000007704)	ACTA1 (ENSSSAG00000007690)
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000100379	ENSSSAG00000100598	krt99 (ENSSSAG00000045036)	ENSSSAG00000053114	ENSSSAG00000044165	PLAK (ENSSSAG00000041828)	cdc6 (ENSSSAG00000041769)	ENSSSAG00000041756	ENSSSAG00000041744	ENSSSAG00000040996	mrpl45 (ENSSSAG00000040904)	ENSSSAG00000092308	socs7 (ENSSSAG00000040368)	sp2 (ENSSSAG00000040293)	ENSSSAG00000016022	ENSSSAG00000081786 #22	ENSSSAG00000093318 #22	RM04 (ENSSSAG00000057361)	ENSSSAG00000101448	col9a1a (ENSSSAG00000015756)	tp4a1 (ENSSSAG00000015747)	lgsn (ENSSSAG00000015736)	ENSSSAG00000103185	ENSSSAG00000120680	ENSSSAG00000094621	ENSSSAG00000007744	myom2a (ENSSSAG00000119139)	ENSSSAG00000083618	dla (ENSSSAG00000007717)	RHOU (ENSSSAG00000007710)	CCSAP (ENSSSAG00000007704)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	243						ENSGT00390000013448.a.a.b	ENSGT00570000079239.f	ENSGT00440000037341.a.z.a	ENSGT00440000037341.a.y	ENSGT00940000158843.g	ENSGT00940000155823.B.f	ENSGT00500000044929.c.a	ENSGT00940000156126.b	ENSGT00940000153168.B.b	ENSGT00510000047676	ENSGT00940000154902.tb.a.a #22	ENSGT00940000165200.e	ENSGT00390000017746.k	ENSGT00940000157593.t	ENSGT00700000104522.c	ENSGT01030000234606.a.a.a.b.i	ENSGT00940000161152.c	ENSGT00940000155068.a.b.c	ENSGT00510000048167.a	ENSGT00940000154551.b.l.b	ENSGT00940000154518.b.c	ENSGT00940000156925.v.k.b	ENSGT00940000158120.j	ENSGT00940000158302.d.a.j.b	ENSGT00940000167270.f	ENSGT00740000115593.c
Huchen	MODERN SPECIES	245								degs1 (ENSHHUG00000047864)	nvl (ENSHHUG00000047868)	FAM98A (ENSHHUG00000047902)	rasgrp3 (ENSHHUG00000047927)	LTBP1 (ENSHHUG00000047938)	ttc27 (ENSHHUG00000048146)	yipf4 (ENSHHUG00000048315)	exo1 (ENSHHUG00000048317)	ENSHHUG00000048323 #22	ENSHHUG00000048325	PDZD8 (ENSHHUG00000048326)	slc18a2 (ENSHHUG00000048330)	kcnk18 (ENSHHUG00000048340)	ENSHHUG00000048341	vax1 (ENSHHUG00000048353)	atp6v1ba (ENSHHUG00000048354)	shtn1 (ENSHHUG00000048402)	hspa12a (ENSHHUG00000048417)	pitx3 (ENSHHUG00000048444)	ENSHHUG00000048452	macroh2a2 (ENSHHUG00000048480)	ENSHHUG00000048493	ENSHHUG00000048503	hells (ENSHHUG00000048559)
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00390000007683.g	ENSGT00390000014293.b.l	ENSGT00570000079168.b.b.a.b	ENSGT00940000166490.b	ENSGT00950000183100.B.p.b	ENSGT00390000002970.c	ENSGT00390000013448.a.a.b	ENSGT00570000079239.f	ENSGT00440000037341.a.y	ENSGT00940000158843.g	ENSGT00940000155823.B.f	ENSGT00500000044929.c.a	ENSGT00940000156126.b	ENSGT00940000153168.B.b	ENSGT00510000047676	ENSGT00940000154902.tb.a.a #22	ENSGT00940000165200.e	ENSGT00390000017746.k	ENSGT00940000157593.t	ENSGT00700000104522.c	ENSGT01030000234606.a.a.a.b.i	ENSGT00940000161152.c	ENSGT00940000155068.a.b.c	ENSGT00510000048167.a	ENSGT00940000154551.b.l.b	ENSGT00940000154518.b.c	ENSGT00940000156925.v.k.b	ENSGT00940000158120.j	ENSGT00940000154865.vb.b	ENSGT00940000167270.f	ENSGT00740000115593.c
Salmo	ANCESTRAL SPECIES	29	ENSGT00940000164412.a.a.b.j.b.b	ENSGT00390000007683.g	ENSGT00390000014293.b.l	ENSGT00570000079168.b.b.a.b	ENSGT00940000166490.b	ENSGT00950000183100.B.p.b	ENSGT00390000002970.c	ENSGT00390000013448.a.a.b	ENSGT00570000079239.f	ENSGT00440000037341.a.z.a	ENSGT00940000158843.g	ENSGT00940000155823.B.f	ENSGT00500000044929.c.a	ENSGT00940000153168.B.b	ENSGT00510000047676	ENSGT00940000154902.tb.a.a #22	ENSGT00940000165200.e	ENSGT00390000017746.k	ENSGT00940000157593.t	ENSGT00700000104522.c	ENSGT01030000234606.a.a.a.b.i	ENSGT00940000161152.c	ENSGT00940000155068.a.b.c	ENSGT00510000048167.a	ENSGT00940000154551.b.l.b	ENSGT00940000154518.b.c	ENSGT00940000156925.v.k.b	ENSGT00940000158120.j	ENSGT00940000154865.vb.b	ENSGT00940000167270.f	ENSGT00740000115593.c
Atlantic salmon	MODERN SPECIES	9	ENSSSAG00000089193	chchd1 (ENSSSAG00000055622)	ENSSSAG00000055575	ENSSSAG00000121660	ENSSSAG00000121403	ENSSSAG00000055445	fbxo28 (ENSSSAG00000091948)	ENSSSAG00000055417	nvl (ENSSSAG00000055376)	ENSSSAG00000116448	rasgrp3 (ENSSSAG00000054335)	LTBP1 (ENSSSAG00000044896)	ttc27 (ENSSSAG00000042355)	yipf4 (ENSSSAG00000039940)	exo1 (ENSSSAG00000103371)	ENSSSAG00000100205 #22	PDZD8 (ENSSSAG00000076238)	SLC18A2 (ENSSSAG00000076093)	kcnk18 (ENSSSAG00000093804)	pla2g4f (ENSSSAG00000076076)	vax1 (ENSSSAG00000101324)	atp6v1ba (ENSSSAG00000076022)	shtn1 (ENSSSAG00000076009)	hspa12a (ENSSSAG00000001820)	ENSSSAG00000075958	H2AW (ENSSSAG00000074192)	ENSSSAG00000074264	ENSSSAG00000074170	ENSSSAG00000074124	ENSSSAG00000085939	ENSSSAG00000072792
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00390000007683.g	ENSGT00390000014293.b.l	ENSGT00570000079168.b.b.a.b	ENSGT00940000166490.b	ENSGT00950000183100.B.o	ENSGT00390000002970.c	ENSGT00390000013448.a.a.b	ENSGT00570000079239.f	ENSGT00440000037341.a.y	ENSGT00940000158843.g	ENSGT00940000155823.B.f	ENSGT00500000044929.c.a	ENSGT00940000156126.b	ENSGT00940000153168.B.b	ENSGT00510000047676	ENSGT00940000154902.tb.a.a #22	ENSGT00940000165200.e	ENSGT00390000017746.k	ENSGT00940000157593.t	ENSGT00700000104522.c	ENSGT00940000165789	ENSGT01030000234606.a.a.a.b.i	ENSGT00940000161152.c	ENSGT00940000155068.a.b.c	ENSGT00510000048167.a	ENSGT00940000154551.b.l.b	ENSGT00940000154518.b.c	ENSGT00940000156925.v.k.b	ENSGT00940000158120.j	ENSGT00940000158302.d.a.j.b	ENSGT00940000167270.f
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00390000007683.g	ENSGT00390000014293.b.l	ENSGT00570000079168.b.b.a.b	ENSGT00940000166490.b	ENSGT00950000183100.B.o	ENSGT00390000002970.c	ENSGT00390000013448.a.a.b	ENSGT00570000079239.f	ENSGT00440000037341.a.y	ENSGT00940000158843.g	ENSGT00940000155823.B.f	ENSGT00500000044929.c.a	ENSGT00940000156126.b	ENSGT00940000153168.B.b	ENSGT00510000047676	ENSGT00940000154902.tb.a.a #22	ENSGT00940000165200.e	ENSGT00390000017746.k	ENSGT00940000157593.t	ENSGT00700000104522.c	ENSGT01030000234606.a.a.a.b.i	ENSGT00940000161152.c	ENSGT00940000155068.a.b.c	ENSGT00510000048167.a	ENSGT00940000154551.b.l.b	ENSGT00940000154518.b.c	ENSGT00940000156925.v.k.b	ENSGT00940000158120.j	ENSGT00940000167270.f	ENSGT00740000115593.c	ENSGT01030000234610.b.a.b.b.d
Chinook salmon	MODERN SPECIES	30	chchd1 (ENSOTSG00005008580)	ENSOTSG00005008579	ENSOTSG00005008577	ENSOTSG00005008576	POLR1C (ENSOTSG00005008575)	fbxo28 (ENSOTSG00005008574)	nvl (ENSOTSG00005007405)	degs1 (ENSOTSG00005007403)	FAM98A (ENSOTSG00005007401)	rasgrp3 (ENSOTSG00005007392)	LTBP1 (ENSOTSG00005007387)	ttc27 (ENSOTSG00005002529)	BIRC6 (ENSOTSG00005001432)	yipf4 (ENSOTSG00005001383)	exo1 (ENSOTSG00005001128)	ENSOTSG00005001104 #22	ENSOTSG00005001092	PDZD8 (ENSOTSG00005001087)	slc18a2 (ENSOTSG00005001033)	kcnk18 (ENSOTSG00005001027)	ENSOTSG00005001025	vax1 (ENSOTSG00005000729)	atp6v1ba (ENSOTSG00005036450)	shtn1 (ENSOTSG00005036449)	hspa12a (ENSOTSG00005036401)	pitx3 (ENSOTSG00005036400)	GBF1 (ENSOTSG00005036267)	macroh2a2 (ENSOTSG00005036265)	ENSOTSG00005036262	hells (ENSOTSG00005036242)	calhm2.1 (ENSOTSG00005036217)
Salmoninae	ANCESTRAL SPECIES	82	ENSGT00940000164412.a.a.b.j.b.a	ENSGT01000000220538	ENSGT00390000014293.b.k	ENSGT00570000079168.b.b.a.a	ENSGT00940000162682.A.a.b.b.b	ENSGT00950000183100.B.p.a	ENSGT00390000002970.d	ENSGT00390000013448.a.a.a	ENSGT00570000079239.g	ENSGT00440000037341.a.z.b	ENSGT00940000158843.h	ENSGT00940000155823.B.e	ENSGT00500000044929.c.b	ENSGT00940000156126.a	ENSGT00940000153168.B.a	ENSGT00940000154902.tb.a.b #22	ENSGT00940000165200.f	ENSGT00390000017746.l	ENSGT00940000157593.s	ENSGT00700000104522.d	ENSGT01030000234606.a.a.a.b.j	ENSGT00940000161152.d	ENSGT00940000155068.a.b.d	ENSGT00950000182805.a.b	ENSGT00940000154551.b.l.a	ENSGT00940000154518.b.d	ENSGT00940000156925.v.l	ENSGT00940000156925.v.k.a	ENSGT00940000158120.i	ENSGT01000000215701	ENSGT00940000154865
Huchen	MODERN SPECIES	27	ENSHHUG00000029584	ENSHHUG00000029578	si:ch211-223p8.8 (ENSHHUG00000029567)	polr1c (ENSHHUG00000029524)	fbxo28 (ENSHHUG00000029519)	degs1 (ENSHHUG00000029515)	nvl (ENSHHUG00000029491)	ENSHHUG00000029468	rasgrp3 (ENSHHUG00000029433)	ENSHHUG00000029429	LTBP1 (ENSHHUG00000029375)	ttc27 (ENSHHUG00000029337)	BIRC6 (ENSHHUG00000029137)	yipf4 (ENSHHUG00000029115)	ENSHHUG00000029112	ENSHHUG00000029106 #22	ENSHHUG00000029104	PDZD8 (ENSHHUG00000029095)	slc18a2 (ENSHHUG00000029055)	kcnk18 (ENSHHUG00000029047)	ENSHHUG00000029039	vax1 (ENSHHUG00000029035)	ENSHHUG00000029033	atp6v1ba (ENSHHUG00000029001)	ENSHHUG00000028991
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	583						ENSGT00390000008975.w	ENSGT00390000007552.r #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00970000197172	ENSGT00390000006954.g	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.q.b #21	ENSGT00940000165073.a.a.i.a	ENSGT00940000154902.tb.b.a.a #22	ENSGT00940000159818.g	ENSGT00940000158335.l	ENSGT00940000156656	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b
Salmoninae_a	ANCESTRAL SPECIES	106	ENSGT00940000158553.b.b.f	ENSGT00940000165849.g	ENSGT00940000158553.b.b.e	ENSGT00940000165849.h	ENSGT00950000183175.B.a	ENSGT00940000160581.h.b	ENSGT01030000234543.A.b.p.a	ENSGT00940000166166.g.b	ENSGT00940000155429.b.b	ENSGT00950000183054.a.a.b.c.b	ENSGT00390000006954.g	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.q.b #21	ENSGT00940000165073.a.a.i.a	ENSGT00940000154902.tb.b.a.a #22	ENSGT00940000159818.g.b	ENSGT00940000158335.k	ENSGT00940000159460.e.b	ENSGT00390000000610.j.a	ENSGT00970000193390.c.a.a.b.b.a.a.a	ENSGT00940000164978.a.e	ENSGT00940000158770.f	ENSGT00510000046908.a.a.a.j	ENSGT00940000165034.e	ENSGT00940000157743.j	ENSGT00940000155437	ENSGT00530000063860.a.g	ENSGT00940000164810.h.a	ENSGT00940000164810.g	ENSGT00940000158869.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	83										ENSGT00940000155429.b.b	ENSGT00950000183054.a.a.b.c.b	ENSGT00390000006954.g	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.q.b #21	ENSGT00940000154902.tb.b.a.a.a #22	ENSGT00940000159818.g.b	ENSGT00940000158335.k	ENSGT00940000156656.nb.b	ENSGT00940000159460.e.b	ENSGT00390000000610.j.a	ENSGT00970000193390.c.a.a.b.b.a.a.a	ENSGT00940000164978.a.e	ENSGT00940000158770.f	ENSGT00510000046908.a.a.a.j	ENSGT00940000165034.e	ENSGT00940000157743.j	ENSGT00940000155437.d	ENSGT00530000063860.a.g	ENSGT00940000164810.g	ENSGT00940000158869.a
River trout	MODERN SPECIES	4	higd2a (ENSSTUG00000038176)	faf2 (ENSSTUG00000038151)	rnf44 (ENSSTUG00000037977)	ENSSTUG00000037966	sncb (ENSSTUG00000037914)	ENSSTUG00000037888	ctnna1 (ENSSTUG00000037275)	ENSSTUG00000037224	ENSSTUG00000037209	tspan17 (ENSSTUG00000036984)	ENSSTUG00000036958	dctn4 (ENSSTUG00000036858)	ENSSTUG00000036799	polr2g (ENSSTUG00000036779)	eef1g (ENSSTUG00000036282) #21	AHNAK (ENSSTUG00000036255) #22	klhl4 (ENSSTUG00000036028)	ENSSTUG00000036018	ENSSTUG00000036012	MID2 (ENSSTUG00000035625)	ENSSTUG00000035600	pmt (ENSSTUG00000035558)	ENSSTUG00000035548	ENSSTUG00000035544	ENSSTUG00000035536	anxa6 (ENSSTUG00000032895)	tnip1 (ENSSTUG00000032767)	gpx3 (ENSSTUG00000022844)	syvn1 (ENSSTUG00000022675)	smad5 (ENSSTUG00000022608)	tgfbi (ENSSTUG00000022473)
Atlantic salmon	MODERN SPECIES	28	sncb (ENSSSAG00000003870)	ENSSSAG00000120056	ENSSSAG00000094970	ENSSSAG00000091797	ENSSSAG00000040586	ENSSSAG00000097986	ENSSSAG00000111203	tspan17 (ENSSSAG00000059062)	ENSSSAG00000009030	dctn4 (ENSSSAG00000058920)	ENSSSAG00000058700	polr2g (ENSSSAG00000058659)	eef1g (ENSSSAG00000058507) #21	ENSSSAG00000058479	ENSSSAG00000101368 #22	ENSSSAG00000097655 #22	klhl4 (ENSSSAG00000057456)	ENSSSAG00000058286	ENSSSAG00000108071	ENSSSAG00000058239	ENSSSAG00000102857	ENSSSAG00000117229	ENSSSAG00000058167	ENSSSAG00000121379	ENSSSAG00000057968	anxa6 (ENSSSAG00000063257)	ENSSSAG00000067111	tnip1 (ENSSSAG00000063146)	gpx3 (ENSSSAG00000092821)	syvn1 (ENSSSAG00000061270)	smad5 (ENSSSAG00000061188)
Salmo	ANCESTRAL SPECIES	577															ENSGT00940000165073.a.a.i.a	ENSGT00940000154902.tb.b.a.a.b #22
Atlantic salmon	MODERN SPECIES	28	ENSSSAG00000058162	sncb (ENSSSAG00000003870)	ENSSSAG00000120056	ENSSSAG00000094970	ENSSSAG00000091797	ENSSSAG00000040586	ENSSSAG00000097986	ENSSSAG00000111203	tspan17 (ENSSSAG00000059062)	ENSSSAG00000009030	dctn4 (ENSSSAG00000058920)	ENSSSAG00000058700	polr2g (ENSSSAG00000058659)	eef1g (ENSSSAG00000058507) #21	ENSSSAG00000058479	ENSSSAG00000101368 #22	ENSSSAG00000097655 #22	klhl4 (ENSSSAG00000057456)	ENSSSAG00000058286	ENSSSAG00000108071	ENSSSAG00000058239	ENSSSAG00000102857	ENSSSAG00000117229	ENSSSAG00000058167	ENSSSAG00000121379	ENSSSAG00000057968	anxa6 (ENSSSAG00000063257)	ENSSSAG00000067111	tnip1 (ENSSSAG00000063146)	gpx3 (ENSSSAG00000092821)	syvn1 (ENSSSAG00000061270)
Oncorhynchus	ANCESTRAL SPECIES	467																ENSGT00940000154902.tb.b.a.a #22	ENSGT00940000159818.g.b
Oncorhynchus_a	ANCESTRAL SPECIES	663																ENSGT00940000154902.tb.b.a.a #22	ENSGT00940000159818.g.b
Coho salmon	MODERN SPECIES	6	sncb (ENSOKIG00005036182)	ENSOKIG00005036208	ENSOKIG00005036214	ctnna1 (ENSOKIG00005036269)	LRRTM2 (ENSOKIG00005036952)	ENSOKIG00005036960	ENSOKIG00005036976	tspan17 (ENSOKIG00005037036)	ENSOKIG00005037112	dctn4 (ENSOKIG00005037124)	ENSOKIG00005037171	ENSOKIG00005037181	polr2g (ENSOKIG00005037238)	eef1g (ENSOKIG00005037285) #21	ENSOKIG00005037775	AHNAK (ENSOKIG00005037785) #22	klhl4 (ENSOKIG00005037799)	ENSOKIG00005037957	ENSOKIG00005037979	ENSOKIG00005038003	TSC22D3 (ENSOKIG00005038009)	MID2 (ENSOKIG00005038047)	ENSOKIG00005038052	ENSOKIG00005038057	ENSOKIG00005038090	ENSOKIG00005038098	ENSOKIG00005038120	ENSOKIG00005038220	ENSOKIG00005038233	anxa6 (ENSOKIG00005038415)	ENSOKIG00005040827
Rainbow trout	MODERN SPECIES	23	ENSOMYG00000071989	sncb (ENSOMYG00000053227)	ENSOMYG00000058589	ENSOMYG00000072172	ENSOMYG00000051680	ENSOMYG00000033550	ENSOMYG00000035573	ENSOMYG00000050988	tspan17 (ENSOMYG00000035548)	ENSOMYG00000035579	dctn4 (ENSOMYG00000065333)	ENSOMYG00000069580	polr2g (ENSOMYG00000035649)	eef1g (ENSOMYG00000035715) #21	ENSOMYG00000072753	ENSOMYG00000075133 #22	klhl4 (ENSOMYG00000075939)	ENSOMYG00000036109	ENSOMYG00000059674	ENSOMYG00000072740	ENSOMYG00000060088	ENSOMYG00000050052	ENSOMYG00000073997	ENSOMYG00000062245	ENSOMYG00000058976	ENSOMYG00000063835	ENSOMYG00000070666	ENSOMYG00000037572	ENSOMYG00000050338	ENSOMYG00000065547	ENSOMYG00000033703
Huchen	MODERN SPECIES	5148															ENSHHUG00000017936	ENSHHUG00000017930 #22
Salmoninae	ANCESTRAL SPECIES	583													ENSGT00390000008975.w	ENSGT00390000007552.r #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00970000197172	ENSGT00390000006954.g	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.q.b #21	ENSGT00940000165073.a.a.i.a	ENSGT00940000154902.tb.b.a.a #22	ENSGT00940000159818.g	ENSGT00940000158335.l	ENSGT00940000156656	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b
Huchen	MODERN SPECIES	2891												dctn4 (ENSHHUG00000037827)	polr2g (ENSHHUG00000037864)	eef1g (ENSHHUG00000037952) #21	ENSHHUG00000037964	ENSHHUG00000037986 #22	ENSHHUG00000037995
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000156333	ENSGT00940000155980.C	ENSGT00940000160064.a.b.a	ENSGT01080000257697	ENSGT00940000159626.l	ENSGT00940000160186.b.a	ENSGT00940000171730	ENSGT00940000157197.f	ENSGT00940000166166.g.a	ENSGT00940000155429.b.a	ENSGT00950000183054.a.a.b.c.a	ENSGT00390000006954.h	ENSGT00390000008975.w	ENSGT00390000007552.r #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a	ENSGT00940000158335.l	ENSGT00940000156656	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b	ENSGT00390000017153.b	ENSGT00940000164978.a.f	ENSGT00940000158770.e	ENSGT00510000046908.a.a.a.i	ENSGT00940000165034.f	ENSGT00940000176927	ENSGT00940000153986.b.b	ENSGT00940000157743.i
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000159626.l	ENSGT00940000160186.b.a	ENSGT00940000171730	ENSGT00940000157197.f	ENSGT00940000158553.b.b.e	ENSGT00940000165849.g	ENSGT00940000160581.h.b	ENSGT01030000234543.A.b.p.a.b	ENSGT00940000166166.g.a	ENSGT00940000155429.b.a	ENSGT00950000183054.a.a.b.c.a	ENSGT00390000006954.h	ENSGT00390000008975.w	ENSGT00390000007552.q.a #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a	ENSGT00940000158335.l	ENSGT00940000156656.nb.a	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b	ENSGT00390000017153.b	ENSGT00940000164978.a.f	ENSGT00940000158770.e	ENSGT00510000046908.a.a.a.i	ENSGT00940000165034.f	ENSGT00940000176927	ENSGT00940000153986.b.b	ENSGT00940000157743.i
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000040238	ENSSSAG00000104720	ENSSSAG00000047614	ENSSSAG00000047624	ENSSSAG00000097662	ENSSSAG00000057065	ENSSSAG00000057056	ENSSSAG00000057070	ENSSSAG00000103842	ENSSSAG00000096259	RPB7 (ENSSSAG00000057126)	ENSSSAG00000057085	ef-1g (ENSSSAG00000057229) #21	ENSSSAG00000005685	ENSSSAG00000057422	ENSSSAG00000082237 #22	klhl4 (ENSSSAG00000058343)	ENSSSAG00000057824	ENSSSAG00000109522	ENSSSAG00000089057	ENSSSAG00000119918	ENSSSAG00000058307	ENSSSAG00000100587	ENSSSAG00000057894	ENSSSAG00000085192	pgfrl (ENSSSAG00000057978)	ENSSSAG00000058029	ANXA6 (ENSSSAG00000047797)	tnip1 (ENSSSAG00000056400)	gpx3 (ENSSSAG00000104366)	ENSSSAG00000056436
Oncorhynchus	ANCESTRAL SPECIES	34	ENSGT00910000144291	ENSGT00940000157197.e	ENSGT00940000158553.b.b.f	ENSGT00940000165849.g	ENSGT00940000158553.b.b.e.a	ENSGT01090000261123	ENSGT00950000183175.B.a	ENSGT00940000166166.g.b	ENSGT00940000155429.b.b	ENSGT00950000183054.a.a.b.c.b	ENSGT00390000006954.g	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.r.b #21	ENSGT00940000165073.a.a.i.b.a	ENSGT00940000154902.tb.b.a.b #22	ENSGT00940000158335.k	ENSGT00940000156656.mb	ENSGT00940000159460.e.b	ENSGT00940000176927	ENSGT00940000157743.j	ENSGT00940000155437.e	ENSGT00530000063860.a.g	ENSGT00940000164810.h.a	ENSGT00940000158869.a	ENSGT00940000167363.e	ENSGT00940000153322.B.d.a.m	ENSGT00390000017284.b.g	ENSGT01030000235165.d	ENSGT00980000203039	ENSGT00510000048167.b.b.d.b
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000054838	ENSOMYG00000037742	ENSOMYG00000058729	ENSOMYG00000037725	ENSOMYG00000064802	ENSOMYG00000072538	ENSOMYG00000037716	ENSOMYG00000050327	ENSOMYG00000049837	ENSOMYG00000060860	ENSOMYG00000056629	ENSOMYG00000037710	rpb7 (ENSOMYG00000037692)	eef1g (ENSOMYG00000037665) #21	ENSOMYG00000037646	ENSOMYG00000037637 #22	ENSOMYG00000037620 #22	klhl4 (ENSOMYG00000037613)	ENSOMYG00000064454	ENSOMYG00000037596	ENSOMYG00000070981	ENSOMYG00000075082	ENSOMYG00000059646	ENSOMYG00000055997	ENSOMYG00000073770	ENSOMYG00000035682	ENSOMYG00000035660	ENSOMYG00000035656	anxa6 (ENSOMYG00000032224)	ENSOMYG00000076812	tnip1 (ENSOMYG00000035872)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154902.tb.b.b #22
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000155980.C	ENSGT00940000160064.a.b.a	ENSGT01080000257697	ENSGT00940000159626.l	ENSGT00940000160186.b.a	ENSGT00940000171730	ENSGT00940000157197.f	ENSGT00940000166166.g.a	ENSGT00940000155429.b.a	ENSGT00950000183054.a.a.b.c.a	ENSGT00390000006954.h	ENSGT00390000008975.w	ENSGT00390000007552.r #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a	ENSGT00940000158335.l	ENSGT00940000156656	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b	ENSGT00390000017153.b	ENSGT00940000164978.a.f	ENSGT00940000158770.e	ENSGT00510000046908.a.a.a.i	ENSGT00940000165034.f	ENSGT00940000176927	ENSGT00940000153986.b.b	ENSGT00940000157743.i	ENSGT00530000063860.a.h
Oncorhynchus	ANCESTRAL SPECIES	470																ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a
Oncorhynchus_a	ANCESTRAL SPECIES	34	ENSGT00910000144291	ENSGT00940000157197.e	ENSGT00940000158553.b.b.f	ENSGT00940000158553.b.b.e.a	ENSGT01090000261123	ENSGT00950000183175.B.a	ENSGT00940000166166.g.b	ENSGT00940000155429.b.b	ENSGT00950000183054.a.a.b.c.b	ENSGT00390000006954.g	ENSGT00390000006954.h	ENSGT00950000183059.a	ENSGT00390000008975.x	ENSGT00390000007552.r.b #21	ENSGT00940000165073.a.a.i.b.a	ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a	ENSGT00940000158335.k	ENSGT00940000156656.lb.b	ENSGT00940000159460.e.b	ENSGT00940000176927	ENSGT00940000157743.j	ENSGT00940000155437.e	ENSGT00530000063860.a.g	ENSGT00940000164810.h.a	ENSGT00940000158869.a	ENSGT00940000167363.e	ENSGT00940000153322.B.d.a.m	ENSGT00390000017284.b.g	ENSGT01030000235165.d	ENSGT00980000203039
Coho salmon	MODERN SPECIES	10	ENSOKIG00005016932	atrx (ENSOKIG00005016683)	ENSOKIG00005016646	ENSOKIG00005025626	ENSOKIG00005025608	fgf16 (ENSOKIG00005025592)	zdhhc15b (ENSOKIG00005025448)	UPRT (ENSOKIG00005025307)	abcb7 (ENSOKIG00005024772)	ENSOKIG00005024727	ENSOKIG00005024718	polr2g (ENSOKIG00005024672)	eef1g (ENSOKIG00005024002) #21	dctn4 (ENSOKIG00005023824)	ENSOKIG00005023789	ENSOKIG00005023649 #22	klhl4 (ENSOKIG00005023464)	ENSOKIG00005023450	ENSOKIG00005023444	ENSOKIG00005023429	TSC22D3 (ENSOKIG00005023412)	MID2 (ENSOKIG00005023032)	ENSOKIG00005022990	pmt (ENSOKIG00005022463)	ENSOKIG00005022222	ENSOKIG00005022184	anxa6 (ENSOKIG00005017951)	tnip1 (ENSOKIG00005017766)	gpx3 (ENSOKIG00005017729)	gpr137 (ENSOKIG00005017711)	syvn1 (ENSOKIG00005017680)
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000037742	ENSOMYG00000058729	ENSOMYG00000037725	ENSOMYG00000064802	ENSOMYG00000072538	ENSOMYG00000037716	ENSOMYG00000050327	ENSOMYG00000049837	ENSOMYG00000060860	ENSOMYG00000056629	ENSOMYG00000037710	rpb7 (ENSOMYG00000037692)	eef1g (ENSOMYG00000037665) #21	ENSOMYG00000037646	ENSOMYG00000037637 #22	ENSOMYG00000037620 #22	klhl4 (ENSOMYG00000037613)	ENSOMYG00000064454	ENSOMYG00000037596	ENSOMYG00000070981	ENSOMYG00000075082	ENSOMYG00000059646	ENSOMYG00000055997	ENSOMYG00000073770	ENSOMYG00000035682	ENSOMYG00000035660	ENSOMYG00000035656	anxa6 (ENSOMYG00000032224)	ENSOMYG00000076812	tnip1 (ENSOMYG00000035872)	gpx3 (ENSOMYG00000035866)
Salmo	ANCESTRAL SPECIES	24	ENSGT00940000160186.b.a	ENSGT00940000171730	ENSGT00940000157197.f	ENSGT00940000158553.b.b.e	ENSGT00940000165849.g	ENSGT00940000160581.h.b	ENSGT01030000234543.A.b.p.a.b	ENSGT00940000166166.g.a	ENSGT00940000155429.b.a	ENSGT00950000183054.a.a.b.c.a	ENSGT00390000006954.h	ENSGT00390000008975.w	ENSGT00390000007552.q.a #21	ENSGT00940000165073.a.a.i.b	ENSGT00940000154902.tb.b.a.b #22	ENSGT00940000154902.tb.b.b #22	ENSGT00940000159818.g.a	ENSGT00940000158335.l	ENSGT00940000156656.nb.a	ENSGT00940000159460.e.a	ENSGT00390000000610.j.b	ENSGT00970000193390.c.a.a.b.b.a.a.b	ENSGT00390000017153.b	ENSGT00940000164978.a.f	ENSGT00940000158770.e	ENSGT00510000046908.a.a.a.i	ENSGT00940000165034.f	ENSGT00940000176927	ENSGT00940000153986.b.b	ENSGT00940000157743.i	ENSGT00940000155437.c
River trout	MODERN SPECIES	22	CLTB (ENSSTUG00000035158)	ENSSTUG00000035170	faf2 (ENSSTUG00000035180)	rnf44 (ENSSTUG00000035215)	ENSSTUG00000035261	ENSSTUG00000035270	ctnna1 (ENSSTUG00000035320)	LRRTM2 (ENSSTUG00000036148)	ENSSTUG00000036150	tspan17 (ENSSTUG00000036163)	ENSSTUG00000036283	dctn4 (ENSSTUG00000036289)	polr2g (ENSSTUG00000036343)	eef1g (ENSSTUG00000036419) #21	ENSSTUG00000000097	ENSSTUG00000000100 #22	klhl4 (ENSSTUG00000000106)	ENSSTUG00000000129	ENSSTUG00000000140	MID2 (ENSSTUG00000000157)	ENSSTUG00000000226	pmt (ENSSTUG00000000246)	ENSSTUG00000000282	ENSSTUG00000000288	ENSSTUG00000000291	tnip1 (ENSSTUG00000000297)	gpx3 (ENSSTUG00000000311)	gpr137 (ENSSTUG00000000316)	syvn1 (ENSSTUG00000000325)	smad5 (ENSSTUG00000000343)	tgfbi (ENSSTUG00000000369)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	119					ENSGT01070000253766.C.o.b.a	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00390000001607.i.a	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n	ENSGT00940000180336	ENSGT00940000154902.tb.c.a #22	ENSGT00940000168728	ENSGT01030000234613.b.a.b.f	ENSGT01030000234613.b.a.a.c.a.m	ENSGT00390000016478.f.a	ENSGT00940000154862.x.b.j	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j	ENSGT00940000154239.a.c	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b	ENSGT00940000159639.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c
Salmoninae_a	ANCESTRAL SPECIES	36	ENSGT00940000156665.b.a	ENSGT00390000005644.g	ENSGT00640000091487.p	ENSGT01070000253766.C.o.b.b	ENSGT00940000156406.a	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a #22	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e	ENSGT01030000234613.b.a.a.c.a.n	ENSGT00390000016478.f.b	ENSGT00940000154862.x.b.i	ENSGT00950000182772.A.a.b.`b.a.i	ENSGT00940000154239.a.d	ENSGT00940000158888.n	ENSGT00940000155555.c.a	ENSGT00940000159639.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000156665.b.a	ENSGT00390000005644.g	ENSGT00640000091487.p	ENSGT01070000253766.C.o.b.b	ENSGT00940000156406.a	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a #22	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e	ENSGT01030000234613.b.a.a.c.a.n	ENSGT00390000016478.f.b	ENSGT00940000154862.x.b.i	ENSGT00950000182772.A.a.b.`b.a.i	ENSGT00990000209766.a	ENSGT00940000154239.a.d	ENSGT00940000158888.n	ENSGT00940000155555.c.a	ENSGT00940000159639.d	ENSGT00940000155720.c.b.b	ENSGT00390000010349.a.b.a	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b
River trout	MODERN SPECIES	17	kiaa1109 (ENSSTUG00000033319)	ENSSTUG00000033421	clic5a (ENSSTUG00000033461)	ENSSTUG00000033503	supt3h (ENSSTUG00000033524)	cdc5l (ENSSTUG00000033559)	ENSSTUG00000033995	ENSSTUG00000034159	hao1 (ENSSTUG00000034183)	ENSSTUG00000034266	ENSSTUG00000034273	ENSSTUG00000034283	PLCB1 (ENSSTUG00000034334)	CDCA4 (ENSSTUG00000034767)	ENSSTUG00000034775	ENSSTUG00000034795 #22	ENSSTUG00000034806	ENSSTUG00000034820	ENSSTUG00000034858	eif5 (ENSSTUG00000034892)	mark3a (ENSSTUG00000034966)	ckba (ENSSTUG00000036465)	ENSSTUG00000036567	trmt61a (ENSSTUG00000036571)	bag5 (ENSSTUG00000036583)	klc1a (ENSSTUG00000036630)	zfyve21 (ENSSTUG00000037880)	brf1a (ENSSTUG00000037992)	BTBD6 (ENSSTUG00000038144)	ENSSTUG00000038217	esr2b (ENSSTUG00000038959)
Atlantic salmon	MODERN SPECIES	28	ampm1 (ENSSSAG00000004100)	eif4eb (ENSSSAG00000004062)	lingo2b (ENSSSAG00000093404)	zgc:100846 (ENSSSAG00000007620)	kiaa1109 (ENSSSAG00000002809)	ENSSSAG00000002612	clic5a (ENSSSAG00000002585)	ENSSSAG00000002568	ENSSSAG00000002562	cdc5l (ENSSSAG00000002525)	ENSSSAG00000105039	ENSSSAG00000093293	ENSSSAG00000002416	ENSSSAG00000103947	ENSSSAG00000108826	ENSSSAG00000100817 #22	ENSSSAG00000116630	ENSSSAG00000002298	ENSSSAG00000002276	EIF5 (ENSSSAG00000002230)	ckba (ENSSSAG00000070110)	MARK3 (ENSSSAG00000070224)	trm61 (ENSSSAG00000070099)	BAG5 (ENSSSAG00000121302)	klc1a (ENSSSAG00000058753)	ZFYVE21 (ENSSSAG00000003314)	ENSSSAG00000058245	ENSSSAG00000057905	ENSSSAG00000086126	ENSSSAG00000100471	ENSSSAG00000053270
Oncorhynchus	ANCESTRAL SPECIES	36	ENSGT00390000005644.g	ENSGT00640000091487.p	ENSGT01070000253766.C.o.b.b	ENSGT00940000158831.h	ENSGT00940000156406.a	ENSGT00940000156598.d	ENSGT00390000010738	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000180336	ENSGT00940000154902.tb.c.a #22	ENSGT00940000164834.a.a	ENSGT01030000234613.b.a.b.e	ENSGT01030000234613.b.a.a.c.a.n	ENSGT00390000016478.f.b	ENSGT00940000154862.x.b.i	ENSGT00950000182772.A.a.b.`b.a.i	ENSGT00940000154239.a.d	ENSGT00940000158888.n	ENSGT00940000155555.c.a	ENSGT00940000159639.d	ENSGT00390000010349.a.b.a	ENSGT00940000155720.c.b.b	ENSGT00940000164854.a.d	ENSGT00940000156116.A.b	ENSGT00730000111179.b.b
Rainbow trout	MODERN SPECIES	17	zgc:100846 (ENSOMYG00000032892)	kiaa1109 (ENSOMYG00000032599)	ENSOMYG00000032468	ENSOMYG00000032451	clic5a (ENSOMYG00000032427)	ENSOMYG00000061433	ENSOMYG00000032357	cdc5l (ENSOMYG00000030797)	ENSOMYG00000047855	ENSOMYG00000059970	hao1 (ENSOMYG00000033541)	ENSOMYG00000033526	PLCB1 (ENSOMYG00000033338)	ENSOMYG00000055460	ENSOMYG00000051000	ENSOMYG00000033086 #22	ENSOMYG00000033078	ENSOMYG00000048291	ENSOMYG00000033053	ENSOMYG00000033025	if5 (ENSOMYG00000032972)	mark3a (ENSOMYG00000032737)	ENSOMYG00000032631	ckba (ENSOMYG00000032605)	trmt61a (ENSOMYG00000032592)	bag5 (ENSOMYG00000032582)	klc1a (ENSOMYG00000032038)	ZFYVE21 (ENSOMYG00000031706)	ENSOMYG00000020798	ENSOMYG00000069616	ENSOMYG00000031659
Oncorhynchus_a	ANCESTRAL SPECIES	33	ENSGT00940000154194.c.b.i	ENSGT00940000156665.b.a	ENSGT00390000005644.g	ENSGT00640000091487.p	ENSGT01070000253766.C.o.b.b	ENSGT00940000156406.a	ENSGT00940000156598.d	ENSGT00390000010738.m	ENSGT00550000074922.l	ENSGT00390000005826.a.b.h.a.b	ENSGT01000000220171	ENSGT00390000018717.b.a.a	ENSGT00940000160301	ENSGT00940000155428.b.d	ENSGT00530000063867.a.b.n.b	ENSGT00940000154902.tb.c.a #22	ENSGT00390000016478.f.b	ENSGT00940000165332.B	ENSGT00940000164866.c	ENSGT00940000179359.a.b.a.b	ENSGT00940000156774.n.a	ENSGT00940000158220.bb	ENSGT00940000156982	ENSGT00940000153304.B.b	ENSGT00390000002319.i	ENSGT00940000165916.c	ENSGT00940000156487.`b	ENSGT00940000160091.p	ENSGT00940000154832.eb.f	ENSGT00940000155226.i	ENSGT00940000158583
Coho salmon	MODERN SPECIES	5	lingo2b (ENSOKIG00005014959)	zgc:100846 (ENSOKIG00005014971)	kiaa1109 (ENSOKIG00005015003)	XKR6 (ENSOKIG00005015064)	clic5a (ENSOKIG00005015076)	ENSOKIG00005015106	supt3h (ENSOKIG00005015131)	cdc5l (ENSOKIG00005015194)	napba (ENSOKIG00005015345)	ENSOKIG00005015424	hao1 (ENSOKIG00005015450)	ENSOKIG00005015510	PLCB1 (ENSOKIG00005015567)	ENSOKIG00005015993	CDCA4 (ENSOKIG00005015998)	ENSOKIG00005016003 #22	ENSOKIG00005016011	ENSOKIG00005016015	ENSOKIG00005016037	ENSOKIG00005016057	EIF5 (ENSOKIG00005016088)	mark3a (ENSOKIG00005016189)	ckba (ENSOKIG00005016475)	ENSOKIG00005016505	trmt61a (ENSOKIG00005016507)	bag5 (ENSOKIG00005016518)	klc1a (ENSOKIG00005016566)	zfyve21 (ENSOKIG00005016825)	ENSOKIG00005016908	BTBD6 (ENSOKIG00005016965)	ENSOKIG00005017063
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154902.tb.c.b #22
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000164379.e.b.n	ENSGT00940000158205.p	ENSGT00940000154194.c.b.j	ENSGT00940000156665.b.b	ENSGT00390000005644.h	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b #22	ENSGT00940000160366.h	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f	ENSGT01030000234613.b.a.a.c.a.m	ENSGT00390000016478.f.a	ENSGT00940000154862.x.b.j	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j	ENSGT00940000154239.a.c	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b	ENSGT00940000159639.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000164379.e.b.n	ENSGT00940000158205.p	ENSGT00940000154194.c.b.j	ENSGT00940000156665.b.b	ENSGT00390000005644.h	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831.g	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b #22	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f	ENSGT01030000234613.b.a.a.c.a.m	ENSGT00390000016478.f.a	ENSGT00940000154862.x.b.j	ENSGT00950000182772.A.a.b.`b.a.j	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b	ENSGT00940000159639.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a
Oncorhynchus_a	ANCESTRAL SPECIES	10	ENSGT00940000164529	ENSGT00940000158205.p	ENSGT00940000154194.c.b.j	ENSGT00940000156665.b.b	ENSGT00390000005644.h	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831.g	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.j	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b #22	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f	ENSGT01030000234613.b.a.a.c.a.m	ENSGT00390000016478.f.a	ENSGT00940000154862.x.b.j	ENSGT00950000182772.A.a.b.`b.a.j	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b	ENSGT00940000159639.c	ENSGT00390000010349.a.b.b	ENSGT00940000155720.c.b.a	ENSGT00940000164854.a.c	ENSGT00940000156116.A.a	ENSGT00940000154656.ob.a
Coho salmon	MODERN SPECIES	27	adh8b (ENSOKIG00005026126)	metap1 (ENSOKIG00005026357)	eif4eb (ENSOKIG00005026488)	lingo2b (ENSOKIG00005026496)	zgc:100846 (ENSOKIG00005026500)	kiaa1109 (ENSOKIG00005026586)	XKR6 (ENSOKIG00005027378)	enpp4 (ENSOKIG00005027390)	CDC5L (ENSOKIG00005027411)	ENSOKIG00005027475	napba (ENSOKIG00005027509)	MCM8 (ENSOKIG00005027665)	crls1 (ENSOKIG00005028204)	ENSOKIG00005028487	CDCA4 (ENSOKIG00005033374)	ENSOKIG00005033401 #22	ENSOKIG00005033408	ENSOKIG00005033420	ENSOKIG00005033440	EIF5 (ENSOKIG00005033507)	mark3a (ENSOKIG00005033781)	CKB (ENSOKIG00005036610)	ENSOKIG00005037001	bag5 (ENSOKIG00005037016)	coa8 (ENSOKIG00005037038)	klc1a (ENSOKIG00005037085)	ZFYVE21 (ENSOKIG00005037153)	ENSOKIG00005037202	ENSOKIG00005037217	ENSOKIG00005037242	ENSOKIG00005037377
Rainbow trout	MODERN SPECIES	10	lingo2b (ENSOMYG00000022495)	zgc:100846 (ENSOMYG00000022512)	kiaa1109 (ENSOMYG00000022696)	ENSOMYG00000023190	ENSOMYG00000066418	ENSOMYG00000023231	ENSOMYG00000073610	ENSOMYG00000023442	ENSOMYG00000025128	napba (ENSOMYG00000025353)	ENSOMYG00000026137	crls1 (ENSOMYG00000026231)	ENSOMYG00000066175	ENSOMYG00000026567	ENSOMYG00000029014	ENSOMYG00000070183 #22	ENSOMYG00000029016	ENSOMYG00000029028	ENSOMYG00000029063	EIF5 (ENSOMYG00000029194)	MARK3 (ENSOMYG00000029487)	kcrt (ENSOMYG00000030175)	bag5 (ENSOMYG00000030316)	COA8 (ENSOMYG00000030327)	ENSOMYG00000069844	klc1a (ENSOMYG00000030541)	ENSOMYG00000030602	ENSOMYG00000049828	ENSOMYG00000066345	ENSOMYG00000063699	ENSOMYG00000030632
Salmo	ANCESTRAL SPECIES	8	ENSGT01060000253533	ENSGT00940000158205.p	ENSGT00940000154194.c.b.j	ENSGT00940000156665.b.b	ENSGT00390000005644.h	ENSGT00640000091487.o	ENSGT01070000253766.C.o.b.a	ENSGT00940000158831	ENSGT00550000074922.k	ENSGT00950000182986.a.b.a.h	ENSGT00390000005826.a.b.h.a.a	ENSGT01090000260080.a	ENSGT00390000001607.i.a	ENSGT00940000155428.b.c	ENSGT00530000063867.a.b.n.a	ENSGT00940000154902.tb.c.b #22	ENSGT00940000160366.h	ENSGT00940000164834.a.b	ENSGT01030000234613.b.a.b.f	ENSGT01030000234613.b.a.a.c.a.m	ENSGT00390000016478.f.a	ENSGT00940000154862.x.b.j	ENSGT01030000238132	ENSGT00950000182772.A.a.b.`b.a.j	ENSGT00940000154239.a.c	ENSGT00940000158888.m	ENSGT00390000008212	ENSGT00940000155555.c.b	ENSGT00940000159639.c	ENSGT00940000155720.c.b.a	ENSGT00390000010349.a.b.b
River trout	MODERN SPECIES	26	eif4eb (ENSSTUG00000038374)	lingo2b (ENSSTUG00000038387)	zgc:100846 (ENSSTUG00000038395)	kiaa1109 (ENSSTUG00000038447)	XKR6 (ENSSTUG00000038780)	enpp4 (ENSSTUG00000038900)	cdc5l (ENSSTUG00000038926)	ENSSTUG00000039392	ENSSTUG00000039394	napba (ENSSTUG00000039410)	MCM8 (ENSSTUG00000039950)	crls1 (ENSSTUG00000040021)	ENSSTUG00000040046	ENSSTUG00000040119	CDCA4 (ENSSTUG00000042266)	ENSSTUG00000042277 #22	ENSSTUG00000042292	ENSSTUG00000042307	ENSSTUG00000042366	eif5 (ENSSTUG00000042464)	mark3a (ENSSTUG00000042605)	ckba (ENSSTUG00000043847)	ENSSTUG00000043864	trmt61a (ENSSTUG00000043870)	bag5 (ENSSTUG00000043899)	coa8 (ENSSTUG00000043911)	klc1a (ENSSTUG00000043936)	ENSSTUG00000044923	brf1a (ENSSTUG00000044935)	BTBD6 (ENSSTUG00000045054)	ENSSTUG00000045078
Huchen	MODERN SPECIES	77						ENSHHUG00000042893	enpp4 (ENSHHUG00000043005)	CLIC5 (ENSHHUG00000043007)	cdc5l (ENSHHUG00000043011)	ENSHHUG00000043125	napba (ENSHHUG00000043129)	MCM8 (ENSHHUG00000043197)	crls1 (ENSHHUG00000043273)	ENSHHUG00000043279	CDCA4 (ENSHHUG00000043584)	ENSHHUG00000043587 #22	ENSHHUG00000043591	ENSHHUG00000043594	ENSHHUG00000043603	eif5 (ENSHHUG00000043661)	mark3a (ENSHHUG00000043683)	ckba (ENSHHUG00000043873)	ENSHHUG00000044379	trmt61a (ENSHHUG00000044382)	bag5 (ENSHHUG00000044390)	coa8 (ENSHHUG00000044392)	klc1a (ENSHHUG00000044404)	zfyve21 (ENSHHUG00000044659)	ENSHHUG00000044674	ENSHHUG00000044675	BTBD6 (ENSHHUG00000044679)
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	3	tmem33 (ENSELUG00000002853)	bbs7 (ENSELUG00000002880)	ccna2 (ENSELUG00000002896)	anxa5a (ENSELUG00000003008)	ENSELUG00000000091	fgfbp2a (ENSELUG00000003052)	prom1a (ENSELUG00000003139)	TAPT1 (ENSELUG00000003205)	ldb2a (ENSELUG00000003229)	qdpra (ENSELUG00000003249)	fstl5 (ENSELUG00000003294)	dctn4 (ENSELUG00000003352)	ENSELUG00000003380	polr2g (ENSELUG00000003401)	eef1g (ENSELUG00000003429) #21	AHNAK (ENSELUG00000034471) #22	klhl4 (ENSELUG00000000116)	ENSELUG00000032791	PCDH11Y (ENSELUG00000020901)	TSC22D3 (ENSELUG00000020930)	MID2 (ENSELUG00000021095)	pmt (ENSELUG00000021169)	ENSELUG00000021198	ENSELUG00000021182	ENSELUG00000033833	ENSELUG00000033207	ENSELUG00000021215	ENSELUG00000021258	anxa6 (ENSELUG00000021328)	tnip1 (ENSELUG00000021479)	gpx3 (ENSELUG00000021557)
Northern pike	MODERN SPECIES	14	zgc:100846 (ENSELUG00000013873)	kiaa1109 (ENSELUG00000013765)	XKR6 (ENSELUG00000013632)	enpp4 (ENSELUG00000013626)	clic5a (ENSELUG00000013608)	ENSELUG00000013580	supt3h (ENSELUG00000013548)	cdc5l (ENSELUG00000013492)	napba (ENSELUG00000013424)	MCM8 (ENSELUG00000013379)	crls1 (ENSELUG00000013306)	hao1 (ENSELUG00000013296)	tmx4 (ENSELUG00000013273)	PLCB1 (ENSELUG00000013241)	CDCA4 (ENSELUG00000013163)	ENSELUG00000034002 #22	exoc3l4 (ENSELUG00000013122)	ENSELUG00000013091	eif5 (ENSELUG00000013021)	mark3a (ENSELUG00000012906)	ENSELUG00000032851	ckb (ENSELUG00000000464)	trmt61a (ENSELUG00000012611)	ENSELUG00000030755	bag5 (ENSELUG00000024943)	apopt1 (ENSELUG00000012568)	klc1a (ENSELUG00000012511)	zfyve21 (ENSELUG00000012406)	brf1a (ENSELUG00000012342)	BTBD6 (ENSELUG00000012265)	ENSELUG00000012210
Acanthomorphata	ANCESTRAL SPECIES	1	ENSGT00940000153786.o.a.b	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Cod	MODERN SPECIES	18	ENSGMOG00000032123	ENSGMOG00000015246	ENSGMOG00000023308	ENSGMOG00000034034	ENSGMOG00000023915	ENSGMOG00000012716	fgfr3 (ENSGMOG00000003758)	ENSGMOG00000003799	nsd2 (ENSGMOG00000003846)	ENSGMOG00000020427	ENSGMOG00000005281	ENSGMOG00000030114	ENSGMOG00000005207	ENSGMOG00000005198	jade1 (ENSGMOG00000005171)	ENSGMOG00000028115 #22	ENSGMOG00000020082	ENSGMOG00000013922	ENSGMOG00000013956	ENSGMOG00000000359	ENSGMOG00000036418	ENSGMOG00000005548	ENSGMOG00000031450	ENSGMOG00000003949	dtd2 (ENSGMOG00000027875)	NUBPL (ENSGMOG00000010649)	ARHGAP5 (ENSGMOG00000007539)	ENSGMOG00000029297	ENSGMOG00000024911	ENSGMOG00000034799	ENSGMOG00000036109
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005006509	ANKRD13D (ENSMMDG00005003875)	ENSMMDG00005003784	ENSMMDG00005003782	ENSMMDG00005003777	ENSMMDG00005003771	ENSMMDG00005003734	CHRNA6 (ENSMMDG00005003717)	chrnb3b (ENSMMDG00005003673)	ENSMMDG00005003660	ENSMMDG00005003637	si:ch211-175m2.5 (ENSMMDG00005003628)	polr2g (ENSMMDG00005003624)	eef1g (ENSMMDG00005003526) #21	ENSMMDG00005003514	ENSMMDG00005003505 #22	klhl4 (ENSMMDG00005003501)	KLHL4 (ENSMMDG00005003498)	PCDH11Y (ENSMMDG00005003485)	TSC22D3 (ENSMMDG00005003471)	MID2 (ENSMMDG00005002195)	pmt (ENSMMDG00005002181)	pmt (ENSMMDG00005002178)	ENSMMDG00005002175	ENSMMDG00005002161	SLC16A2 (ENSMMDG00005002146)	ENSMMDG00005002141	ENSMMDG00005002137	pola2 (ENSMMDG00005001843)	zdhhc24 (ENSMMDG00005001815)	ENSMMDG00005001813
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Eupercaria	ANCESTRAL SPECIES	12	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	481	stxbp6l (ENSLCRG00005014747)	ddhd1b (ENSLCRG00005014497)	cgrrf1 (ENSLCRG00005014492)	psmc6 (ENSLCRG00005014472)	ptger2b (ENSLCRG00005014467)	zfp36l1b (ENSLCRG00005014466)	WIPF2 (ENSLCRG00005014465)	mrpl21 (ENSLCRG00005014464)	zgc:77929 (ENSLCRG00005014463)	npepps (ENSLCRG00005014373)	mrpl45 (ENSLCRG00005014370)	ENSLCRG00005014369	socs7 (ENSLCRG00005014360)	sp2 (ENSLCRG00005014359)	ENSLCRG00005014314	ENSLCRG00005014312 #22	mrpl4 (ENSLCRG00005014310)	ENSLCRG00005014309	col9a1a (ENSLCRG00005014308)	ptp4a1 (ENSLCRG00005014307)	ENSLCRG00005014306	lgsn (ENSLCRG00005014305)	ENSLCRG00005014304	ENSLCRG00005014303	hk1 (ENSLCRG00005010263)	myom2a (ENSLCRG00005010193)	ENSLCRG00005010180	dla (ENSLCRG00005010176)	RHOU (ENSLCRG00005010174)	ENSLCRG00005010172	ARHGAP19 (ENSLCRG00005010166)
Large yellow croaker	MODERN SPECIES		ENSLCRG00005007077	ENSLCRG00005006454	ANKRD13D (ENSLCRG00005005647)	ENSLCRG00005005635	ENSLCRG00005005633	ENSLCRG00005005630	ENSLCRG00005005613	ENSLCRG00005005612	CHRNA6 (ENSLCRG00005005608)	chrnb3b (ENSLCRG00005005605)	ENSLCRG00005005600	si:ch211-175m2.5 (ENSLCRG00005005597)	polr2g (ENSLCRG00005005594)	eef1g (ENSLCRG00005005426) #21	ENSLCRG00005005422	ENSLCRG00005005418 #22	klhl4 (ENSLCRG00005005199)	PCDH11Y (ENSLCRG00005005197)	TSC22D3 (ENSLCRG00005005193)	MID2 (ENSLCRG00005004733)	pmt (ENSLCRG00005004706)	ENSLCRG00005004704	zgc:152774 (ENSLCRG00005004702)	ENSLCRG00005004697	ENSLCRG00005004691	SLC16A2 (ENSLCRG00005004689)	ENSLCRG00005004686	ENSLCRG00005004684	ENSLCRG00005004678	pola2 (ENSLCRG00005002973)	SERPINB1 (ENSLCRG00005002908)
European seabass	DUPLICATION
European seabass	MODERN SPECIES	12	stx3b (ENSDLAG00005014878)	ENSDLAG00005013476	ENSDLAG00005012982	ENSDLAG00005012956	ENSDLAG00005012949	ENSDLAG00005028680	ENSDLAG00005012771	ENSDLAG00005012755	ENSDLAG00005012702	ENSDLAG00005012587	ENSDLAG00005012578	ENSDLAG00005017933	ENSDLAG00005012547	polr2g (ENSDLAG00005012520)	eef1g (ENSDLAG00005012193) #21	ENSDLAG00005034766 #22	klhl4 (ENSDLAG00005011810)	ENSDLAG00005011791	ENSDLAG00005034468	ENSDLAG00005011021	ENSDLAG00005010951	ENSDLAG00005009926	ENSDLAG00005010207	ENSDLAG00005010163	ENSDLAG00005029197	ENSDLAG00005030854	ENSDLAG00005010063	ENSDLAG00005009997	ENSDLAG00005009987	ENSDLAG00005031492	ttc9c (ENSDLAG00005009942)
European seabass	MODERN SPECIES	2	dnaaf9 (ENSDLAG00005023328)	ENSDLAG00005031783	ENSDLAG00005023524	ENSDLAG00005030932	foxi2 (ENSDLAG00005032945)	fgfr3 (ENSDLAG00005023582)	letm1 (ENSDLAG00005024363)	nsd2 (ENSDLAG00005024506)	jade1 (ENSDLAG00005024607)	asmt2 (ENSDLAG00005024622)	pgrmc2 (ENSDLAG00005033902)	ENSDLAG00005024642	ENSDLAG00005004153	ENSDLAG00005028608	ENSDLAG00005027228	ENSDLAG00005032534 #22	ENSDLAG00005004265	ENSDLAG00005004281	ENSDLAG00005018914	ENSDLAG00005033435	ENSDLAG00005004580	EIF5 (ENSDLAG00005004663)	mark3a (ENSDLAG00005004906)	ENSDLAG00005008767	ckba (ENSDLAG00005008698)	trmt61a (ENSDLAG00005008771)	ENSDLAG00005034500	bag5 (ENSDLAG00005026601)	klc1a (ENSDLAG00005008793)	ENSDLAG00005005912	ZFYVE21 (ENSDLAG00005032163)
Gilthead seabream	DUPLICATION
Gilthead seabream	MODERN SPECIES	9	STX3 (ENSSAUG00010009756)	KDM2A (ENSSAUG00010009807)	ANKRD13D (ENSSAUG00010011475)	ENSSAUG00010012128	ENSSAUG00010012132	ENSSAUG00010012135	RNF38 (ENSSAUG00010012142)	ENSSAUG00010012320	CHRNA6 (ENSSAUG00010012324)	chrnb3b (ENSSAUG00010012330)	ENSSAUG00010012397	ENSSAUG00010012401	si:ch211-175m2.5 (ENSSAUG00010012404)	polr2g (ENSSAUG00010012407)	eef1g (ENSSAUG00010012412) #21	ENSSAUG00010012474 #22	klhl4 (ENSSAUG00010012477)	PCDH11Y (ENSSAUG00010012511)	TSC22D3 (ENSSAUG00010012514)	MID2 (ENSSAUG00010012538)	pmt (ENSSAUG00010013497)	ENSSAUG00010013499	zgc:152774 (ENSSAUG00010013501)	ENSSAUG00010013529	ENSSAUG00010015014	SLC16A2 (ENSSAUG00010015016)	ENSSAUG00010015018	ENSSAUG00010015020	pola2 (ENSSAUG00010015056)	zdhhc24 (ENSSAUG00010016075)	ENSSAUG00010016080
Gilthead seabream	MODERN SPECIES	7	ENSSAUG00010022575	foxi2 (ENSSAUG00010022573)	ENSSAUG00010022572	ENSSAUG00010022571	fgfr3 (ENSSAUG00010021636)	letm1 (ENSSAUG00010020913)	nsd2 (ENSSAUG00010020727)	jade1 (ENSSAUG00010020725)	asmt2 (ENSSAUG00010020724)	pgrmc2 (ENSSAUG00010020722)	ENSSAUG00010020475	ENSSAUG00010020464	ahsa1b (ENSSAUG00010020460)	cdca4 (ENSSAUG00010020459)	si:dkey-177p2.6 (ENSSAUG00010020457)	ENSSAUG00010020454 #22	ENSSAUG00010020452	exoc3l4 (ENSSAUG00010020446)	ENSSAUG00010020422	zfyve21 (ENSSAUG00010020416)	klc1a (ENSSAUG00010020199)	coa8 (ENSSAUG00010020197)	bag5 (ENSSAUG00010020196)	trmt61a (ENSSAUG00010020193)	ENSSAUG00010020190	ckba (ENSSAUG00010020187)	mark3a (ENSSAUG00010016257)	eif5 (ENSSAUG00010016191)	vps29 (ENSSAUG00010016123)	ENSSAUG00010016114	KCNH5 (ENSSAUG00010016076)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00390000003049.b.b	ENSGT00940000153786.p	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a	ENSGT00940000163454.a.a.a.b.a.b
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	14	HEATR5A (ENSCLMG00005009093)	ENSCLMG00005009068	ap4s1 (ENSCLMG00005009067)	ENSCLMG00005009066	coch (ENSCLMG00005009065)	scfd1 (ENSCLMG00005009049)	g2e3 (ENSCLMG00005009038)	jade1 (ENSCLMG00005009036)	asmt2 (ENSCLMG00005008932)	pgrmc2 (ENSCLMG00005008930)	ENSCLMG00005008928	ahsa1b (ENSCLMG00005008924)	cdca4 (ENSCLMG00005008922)	ENSCLMG00005008921	ENSCLMG00005008916 #22	ENSCLMG00005008898 #22	ENSCLMG00005008897	exoc3l4 (ENSCLMG00005008896)	vps29 (ENSCLMG00005008894)	eif5 (ENSCLMG00005008893)	ENSCLMG00005008892	mark3a (ENSCLMG00005008182)	ENSCLMG00005008177	ckba (ENSCLMG00005008062)	trmt61a (ENSCLMG00005008060)	bag5 (ENSCLMG00005008059)	coa8 (ENSCLMG00005008058)	klc1a (ENSCLMG00005007934)	zfyve21 (ENSCLMG00005007913)	BTBD6 (ENSCLMG00005007909)	brf1a (ENSCLMG00005007908)
Lumpfish	MODERN SPECIES	14	hikeshi (ENSCLMG00005012630)	HEATR5A (ENSCLMG00005009093)	ENSCLMG00005009068	ap4s1 (ENSCLMG00005009067)	ENSCLMG00005009066	coch (ENSCLMG00005009065)	scfd1 (ENSCLMG00005009049)	g2e3 (ENSCLMG00005009038)	jade1 (ENSCLMG00005009036)	asmt2 (ENSCLMG00005008932)	pgrmc2 (ENSCLMG00005008930)	ENSCLMG00005008928	ahsa1b (ENSCLMG00005008924)	cdca4 (ENSCLMG00005008922)	ENSCLMG00005008921	ENSCLMG00005008916 #22	ENSCLMG00005008898 #22	ENSCLMG00005008897	exoc3l4 (ENSCLMG00005008896)	vps29 (ENSCLMG00005008894)	eif5 (ENSCLMG00005008893)	ENSCLMG00005008892	mark3a (ENSCLMG00005008182)	ENSCLMG00005008177	ckba (ENSCLMG00005008062)	trmt61a (ENSCLMG00005008060)	bag5 (ENSCLMG00005008059)	coa8 (ENSCLMG00005008058)	klc1a (ENSCLMG00005007934)	zfyve21 (ENSCLMG00005007913)	BTBD6 (ENSCLMG00005007909)
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	4	cbx6a (ENSGACG00000019854)	DNAL4 (ENSGACG00000019852)	ENSGACG00000019850	baiap2l2b (ENSGACG00000019848)	ENSGACG00000019846	atf4a (ENSGACG00000019842)	ENSGACG00000019841	ENSGACG00000019826	yju2b (ENSGACG00000019822)	ENSGACG00000019821	wdr83 (ENSGACG00000019818)	wdr83os (ENSGACG00000019815)	ENSGACG00000019813	sp2 (ENSGACG00000019811)	ENSGACG00000019810	ENSGACG00000019809 #22	mrpl4 (ENSGACG00000019808)	ENSGACG00000019807	col9a1a (ENSGACG00000019798)	ptp4a1 (ENSGACG00000019788)	lgsn (ENSGACG00000019786)	myom2a (ENSGACG00000019784)	hk1 (ENSGACG00000019782)	zgc:77929 (ENSGACG00000019781)	ENSGACG00000019780	WIPF2 (ENSGACG00000019779)	ENSGACG00000019778	ENSGACG00000019775	ENSGACG00000019774	ENSGACG00000019773	nup133 (ENSGACG00000019771)
Stickleback	MODERN SPECIES	6	CDT1 (ENSGACG00000002407)	PIEZO1 (ENSGACG00000002396)	tm9sf2 (ENSGACG00000002358)	pcca (ENSGACG00000002342)	ENSGACG00000002337	vps8 (ENSGACG00000002325)	FAM98A (ENSGACG00000002316)	ENSGACG00000002313	cdh1 (ENSGACG00000002297)	rasgrp3 (ENSGACG00000002277)	LTBP1 (ENSGACG00000002267)	ttc27 (ENSGACG00000002246)	ENSGACG00000002201	yipf4 (ENSGACG00000002189)	exo1 (ENSGACG00000002181)	ENSGACG00000002176 #22	ENSGACG00000002174	PDZD8 (ENSGACG00000002170)	slc18a2 (ENSGACG00000002162)
Stickleback	MODERN SPECIES	3	NDUFS8 (ENSGACG00000017764)	ran (ENSGACG00000017755)	stx3b (ENSGACG00000017743)	KDM2A (ENSGACG00000017741)	ANKRD13D (ENSGACG00000017740)	ENSGACG00000017735	ENSGACG00000017733	ENSGACG00000017728	ENSGACG00000017726	CHRNA6 (ENSGACG00000017723)	chrnb3b (ENSGACG00000017720)	ENSGACG00000017717	si:ch211-175m2.5 (ENSGACG00000017715)	polr2g (ENSGACG00000017706)	eef1g (ENSGACG00000017702) #21	ENSGACG00000017697 #22	klhl4 (ENSGACG00000017694)	PCDH11Y (ENSGACG00000017692)	TSC22D3 (ENSGACG00000017689)	MID2 (ENSGACG00000017686)	pmt (ENSGACG00000017681)	zgc:152774 (ENSGACG00000017677)	ENSGACG00000017676	ENSGACG00000017671	ENSGACG00000017669	SLC16A2 (ENSGACG00000017666)	ENSGACG00000017664	pola2 (ENSGACG00000017643)	zdhhc24 (ENSGACG00000017642)	ENSGACG00000017637	dpf2l (ENSGACG00000017632)
Stickleback	MODERN SPECIES	15	slc4a11 (ENSGACG00000004484)	dnaaf9 (ENSGACG00000004495)	ENSGACG00000004515	ENSGACG00000004525	fgfr3 (ENSGACG00000004533)	letm1 (ENSGACG00000004541)	nsd2 (ENSGACG00000004554)	jade1 (ENSGACG00000004571)	asmt2 (ENSGACG00000004587)	ENSGACG00000004598	pgrmc2 (ENSGACG00000004602)	ENSGACG00000004609	ahsa1b (ENSGACG00000004625)	cdca4 (ENSGACG00000004663)	si:dkey-177p2.6 (ENSGACG00000004666)	ENSGACG00000004669 #22	ENSGACG00000004674	exoc3l4 (ENSGACG00000004676)	ENSGACG00000004683	ENSGACG00000004692	ENSGACG00000004696	vps29 (ENSGACG00000004700)	eif5 (ENSGACG00000004730)	mark3a (ENSGACG00000004742)	ckba (ENSGACG00000004758)	trmt61a (ENSGACG00000004779)	bag5 (ENSGACG00000004786)	coa8 (ENSGACG00000004787)	klc1a (ENSGACG00000004792)	zfyve21 (ENSGACG00000004809)	ENSGACG00000004813
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	18	ANKRD13D (ENSSLUG00000020331)	ENSSLUG00000020319	ENSSLUG00000020313	ENSSLUG00000020308	ENSSLUG00000020194	ENSSLUG00000020178	CHRNA6 (ENSSLUG00000020168)	chrnb3b (ENSSLUG00000020159)	ENSSLUG00000020156	ENSSLUG00000020123	ENSSLUG00000020113	si:ch211-175m2.5 (ENSSLUG00000020107)	polr2g (ENSSLUG00000020104)	eef1g (ENSSLUG00000019804) #21	ENSSLUG00000019772	ENSSLUG00000019690 #22	klhl4 (ENSSLUG00000019564)	ENSSLUG00000019541	PCDH11Y (ENSSLUG00000019527)	TSC22D3 (ENSSLUG00000019516)	ENSSLUG00000019512	MID2 (ENSSLUG00000018961)	ENSSLUG00000018886	zgc:152774 (ENSSLUG00000018875)	ENSSLUG00000018730	SLC16A2 (ENSSLUG00000018701)	ENSSLUG00000018695	ENSSLUG00000018689	pola2 (ENSSLUG00000018604)	zdhhc24 (ENSSLUG00000018583)	ENSSLUG00000018566
Pike perch	MODERN SPECIES	53	ENSSLUG00000020814	ENSSLUG00000020819	fgfr3 (ENSSLUG00000020851)	letm1 (ENSSLUG00000021563)	ENSSLUG00000022447	nsd2 (ENSSLUG00000022469)	jade1 (ENSSLUG00000022478)	asmt2 (ENSSLUG00000022489)	pgrmc2 (ENSSLUG00000022500)	ENSSLUG00000022505	ENSSLUG00000022516	ENSSLUG00000022557	ahsa1b (ENSSLUG00000022566)	cdca4 (ENSSLUG00000022582)	si:dkey-177p2.6 (ENSSLUG00000022587)	ENSSLUG00000022591 #22	ENSSLUG00000022602	exoc3l4 (ENSSLUG00000022607)	TNFAIP2 (ENSSLUG00000022625)	vps29 (ENSSLUG00000008952)	eif5 (ENSSLUG00000008983)	mark3a (ENSSLUG00000009221)	ckba (ENSSLUG00000012192)	ENSSLUG00000012214	trmt61a (ENSSLUG00000012219)	bag5 (ENSSLUG00000012224)	coa8 (ENSSLUG00000012227)	klc1a (ENSSLUG00000012286)	zfyve21 (ENSSLUG00000013198)	brf1a (ENSSLUG00000013202)	BTBD6 (ENSSLUG00000013209)
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	275	nup133 (ENSCGOG00000017427)	ENSCGOG00000017832	cdc6 (ENSCGOG00000017834)	ENSCGOG00000017859	ENSCGOG00000018177	ENSCGOG00000018178	WIPF2 (ENSCGOG00000018179)	mrpl21 (ENSCGOG00000018180)	zgc:77929 (ENSCGOG00000018183)	npepps (ENSCGOG00000018195)	mrpl45 (ENSCGOG00000018530)	ENSCGOG00000018533	ENSCGOG00000018535	socs7 (ENSCGOG00000018539)	ENSCGOG00000018549	ENSCGOG00000018599 #22	mrpl4 (ENSCGOG00000018602)	ENSCGOG00000018604	ENSCGOG00000018606	ptp4a1 (ENSCGOG00000018609)	lgsn (ENSCGOG00000018643)	ENSCGOG00000018644	myom2a (ENSCGOG00000018657)	hk1 (ENSCGOG00000018845)	ENSCGOG00000022267	dla (ENSCGOG00000022270)	ENSCGOG00000022272	ENSCGOG00000022276	ENSCGOG00000022278	ENSCGOG00000022280	ENSCGOG00000022281
Channel bull blenny	MODERN SPECIES	14	ENSCGOG00000022229	ENSCGOG00000022230	foxi2 (ENSCGOG00000022228)	ENSCGOG00000022222	fgfr3 (ENSCGOG00000022164)	letm1 (ENSCGOG00000022073)	nsd2 (ENSCGOG00000021958)	jade1 (ENSCGOG00000021944)	asmt2 (ENSCGOG00000021940)	pgrmc2 (ENSCGOG00000021936)	ENSCGOG00000021921	ENSCGOG00000021917	ahsa1b (ENSCGOG00000021892)	cdca4 (ENSCGOG00000021889)	ENSCGOG00000021887	ENSCGOG00000021885 #22	ENSCGOG00000021883	TNFAIP2 (ENSCGOG00000021878)	vps29 (ENSCGOG00000021863)	eif5 (ENSCGOG00000021717)	mark3a (ENSCGOG00000020496)	ENSCGOG00000020425	ckba (ENSCGOG00000020388)	trmt61a (ENSCGOG00000020384)	bag5 (ENSCGOG00000020382)	coa8 (ENSCGOG00000020378)	klc1a (ENSCGOG00000020000)	zfyve21 (ENSCGOG00000019949)	BTBD6 (ENSCGOG00000019943)	brf1a (ENSCGOG00000019939)
Channel bull blenny	MODERN SPECIES	1	ran (ENSCGOG00000006508)	stx3b (ENSCGOG00000006484)	KDM2A (ENSCGOG00000005116)	ANKRD13D (ENSCGOG00000004326)	ENSCGOG00000004273	ENSCGOG00000004270	ENSCGOG00000004263	ENSCGOG00000004131	CHRNA6 (ENSCGOG00000004065)	chrnb3b (ENSCGOG00000017465)	ENSCGOG00000017462	ENSCGOG00000017453	si:ch211-175m2.5 (ENSCGOG00000017450)	polr2g (ENSCGOG00000017432)	eef1g (ENSCGOG00000017300) #21	ENSCGOG00000017298 #22	klhl4 (ENSCGOG00000017294)	PCDH11Y (ENSCGOG00000017292)	TSC22D3 (ENSCGOG00000017284)	MID2 (ENSCGOG00000016876)	pmt (ENSCGOG00000016826)	ENSCGOG00000016819	zgc:152774 (ENSCGOG00000016812)	ENSCGOG00000016517	SLC16A2 (ENSCGOG00000016498)	ENSCGOG00000016491	ENSCGOG00000016490	ENSCGOG00000016485	pola2 (ENSCGOG00000016282)	zdhhc24 (ENSCGOG00000016275)	ENSCGOG00000016267
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	133	capn9 (ENSLBEG00000001646)	taf5l (ENSLBEG00000001626)	nup133 (ENSLBEG00000001504)	ACTA1 (ENSLBEG00000001468)	CCSAP (ENSLBEG00000001450)	cdc6 (ENSLBEG00000001364)	WIPF2 (ENSLBEG00000001322)	MRPL21 (ENSLBEG00000001294)	zgc:77929 (ENSLBEG00000001283)	npepps (ENSLBEG00000001199)	mrpl45 (ENSLBEG00000001166)	ENSLBEG00000001130	socs7 (ENSLBEG00000001103)	sp2 (ENSLBEG00000001053)	ENSLBEG00000001027	ENSLBEG00000000990 #22	mrpl4 (ENSLBEG00000000848)	ENSLBEG00000000770	ENSLBEG00000000752	ptp4a1 (ENSLBEG00000000700)	lgsn (ENSLBEG00000000662)	ENSLBEG00000000635	myom2a (ENSLBEG00000000581)	hk1 (ENSLBEG00000000465)	ENSLBEG00000000447	dla (ENSLBEG00000000377)	RHOU (ENSLBEG00000000359)	ARHGAP19 (ENSLBEG00000000329)	slit1b (ENSLBEG00000028531)	ENSLBEG00000028529
Ballan wrasse	MODERN SPECIES	290						FAM98A (ENSLBEG00000025346)	DNAH2 (ENSLBEG00000025185)	ENSLBEG00000025100	rasgrp3 (ENSLBEG00000025000)	LTBP1 (ENSLBEG00000024891)	ttc27 (ENSLBEG00000024787)	ENSLBEG00000024757	BIRC6 (ENSLBEG00000024531)	yipf4 (ENSLBEG00000024453)	exo1 (ENSLBEG00000024405)	ENSLBEG00000024364 #22	ENSLBEG00000024344	CALHM3 (ENSLBEG00000024328)	ncapd3 (ENSLBEG00000024293)	calhm2.1 (ENSLBEG00000024277)	LRRC73 (ENSLBEG00000024245)	DLK2 (ENSLBEG00000024196)
Ballan wrasse	MODERN SPECIES	97								ENSLBEG00000001802	ENSLBEG00000001634	chrnb3b (ENSLBEG00000001568)	ENSLBEG00000001552	ENSLBEG00000001483	polr2g (ENSLBEG00000001458)	si:ch211-175m2.5 (ENSLBEG00000001439)	eef1g (ENSLBEG00000001378) #21	AHNAK (ENSLBEG00000001301) #22	klhl4 (ENSLBEG00000001251)	PCDH11Y (ENSLBEG00000001201)	NKD2 (ENSLBEG00000001152)	PLEKHG4B (ENSLBEG00000001062)	ENSLBEG00000001008	NHLRC1 (ENSLBEG00000000996)	ptdss1a (ENSLBEG00000000932)	KIF13A (ENSLBEG00000000794)	rbm24b (ENSLBEG00000000774)	grinab (ENSLBEG00000000682)	smpd5 (ENSLBEG00000000634)	malsu1 (ENSLBEG00000000603)	NPY (ENSLBEG00000000596)	pals2a (ENSLBEG00000000577)	GSDME (ENSLBEG00000000548)
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00940000165522.b	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	10	taf5l (ENSTNIG00000006301)	nup133 (ENSTNIG00000006300)	ACTA1 (ENSTNIG00000017237)	ENSTNIG00000006298	cdc6 (ENSTNIG00000006297)	WIPF2 (ENSTNIG00000006296)	ENSTNIG00000006295	npepps (ENSTNIG00000006294)	ENSTNIG00000000174	mrpl45 (ENSTNIG00000006293)	ENSTNIG00000006292	socs7 (ENSTNIG00000006291)	sp2 (ENSTNIG00000006290)	ENSTNIG00000000050	ENSTNIG00000006289	ENSTNIG00000001723 #22	mrpl4 (ENSTNIG00000003265)	ENSTNIG00000003266	col9a1a (ENSTNIG00000003267)	ptp4a1 (ENSTNIG00000003268)	lgsn (ENSTNIG00000003269)	ENSTNIG00000003270	myom2a (ENSTNIG00000003271)	hk1 (ENSTNIG00000003272)	ENSTNIG00000003273	dla (ENSTNIG00000003274)	ENSTNIG00000000639	ARHGAP19 (ENSTNIG00000003630)	slit1b (ENSTNIG00000003631)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000685	ENSTNIG00000000692	ENSTNIG00000001121	nanp (ENSTNIG00000002723)	polr1b (ENSTNIG00000002722)	nvl (ENSTNIG00000002721)	tk2 (ENSTNIG00000002720)	aprt (ENSTNIG00000003933)	CDT1 (ENSTNIG00000003932)	ENSTNIG00000005512	ttc27 (ENSTNIG00000005511)	ENSTNIG00000005513	BIRC6 (ENSTNIG00000005514)	yipf4 (ENSTNIG00000005515)	exo1 (ENSTNIG00000004361)	ENSTNIG00000000634 #22	APBA1 (ENSTNIG00000003636)	rflna (ENSTNIG00000003637)	ncor2 (ENSTNIG00000003638)	EP400 (ENSTNIG00000003639)	ENSTNIG00000001320	slc35c2 (ENSTNIG00000002525)	taf13 (ENSTNIG00000002526)	TNNC2 (ENSTNIG00000019679)	ENSTNIG00000000762	ENSTNIG00000002527	ENSTNIG00000002531	GMEB2 (ENSTNIG00000002528)	uxt (ENSTNIG00000002529)	ELK1 (ENSTNIG00000002530)	lamb2 (ENSTNIG00000002532)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000019826	SF3B1 (ENSTNIG00000019737)	ENSTNIG00000019727	ENSTNIG00000019674	ENSTNIG00000019586	sdcbp2 (ENSTNIG00000001879)	sdcbp2 (ENSTNIG00000019837)	ENSTNIG00000019443	pmpca (ENSTNIG00000019531)	ENSTNIG00000019614	ENSTNIG00000005504	apobec2a (ENSTNIG00000000696)	ENSTNIG00000001051	ENSTNIG00000019470	ENSTNIG00000019723	ENSTNIG00000019545 #22	zdhhc5a (ENSTNIG00000019681)	ENSTNIG00000019534	ENSTNIG00000019437	rdh5 (ENSTNIG00000019647)	ENSTNIG00000019543	ENSTNIG00000019539	ENSTNIG00000019504	cdk20 (ENSTNIG00000019530)	src (ENSTNIG00000019527)	ENSTNIG00000019439	ENSTNIG00000019497	ENSTNIG00000019538	akirin1 (ENSTNIG00000019785)	ENSTNIG00000000658	lnx2b (ENSTNIG00000019789)
Tetraodon	MODERN SPECIES		NDUFS8 (ENSTNIG00000013136)	RAN (ENSTNIG00000013137)	STX3 (ENSTNIG00000013138)	KDM2A (ENSTNIG00000013139)	ANKRD13D (ENSTNIG00000013140)	ENSTNIG00000013141	ENSTNIG00000013142	ENSTNIG00000013143	CHRNA6 (ENSTNIG00000013144)	chrnb3b (ENSTNIG00000013145)	chrnb3b (ENSTNIG00000013146)	ENSTNIG00000005912	si:ch211-175m2.5 (ENSTNIG00000005911)	ENSTNIG00000005910	eef1g (ENSTNIG00000005909) #21	ENSTNIG00000000193 #22	klhl4 (ENSTNIG00000016776)	PCDH11Y (ENSTNIG00000016777)	TSC22D3 (ENSTNIG00000016778)	MID2 (ENSTNIG00000016779)	pmt (ENSTNIG00000016780)	zgc:152774 (ENSTNIG00000016781)	ENSTNIG00000016782	SLC16A2 (ENSTNIG00000016783)	ENSTNIG00000016784	pola2 (ENSTNIG00000016785)	zdhhc24 (ENSTNIG00000016786)	ENSTNIG00000016787	ENSTNIG00000016788	dpf2l (ENSTNIG00000016789)	ttc9c (ENSTNIG00000016790)
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Carangaria	ANCESTRAL SPECIES	15	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	82														yipf4 (ENSLCAG00010016087)	exo1 (ENSLCAG00010016097)	ENSLCAG00010016100 #22	ENSLCAG00010016104	ENSLCAG00010016107	PDZD8 (ENSLCAG00010016109)	slc18a2 (ENSLCAG00010016127)	kcnk18 (ENSLCAG00010016200)	vax1 (ENSLCAG00010016202)	atp6v1ba (ENSLCAG00010016252)	shtn1 (ENSLCAG00010016434)	eno4 (ENSLCAG00010016441)	hspa12a (ENSLCAG00010016449)	PNLIPRP2 (ENSLCAG00010016460)	fam210b (ENSLCAG00010016467)	NDUFA4L2 (ENSLCAG00010016471)	shmt2 (ENSLCAG00010016481)	NXPH4 (ENSLCAG00010016507)
Barramundi perch	MODERN SPECIES	39	stx3b (ENSLCAG00010011318)	KDM2A (ENSLCAG00010011367)	ANKRD13D (ENSLCAG00010011505)	ENSLCAG00010011510	ENSLCAG00010011514	ENSLCAG00010011515	ENSLCAG00010011521	CHRNA6 (ENSLCAG00010011528)	chrnb3b (ENSLCAG00010011540)	ENSLCAG00010011547	ENSLCAG00010011549	si:ch211-175m2.5 (ENSLCAG00010011552)	polr2g (ENSLCAG00010011557)	eef1g (ENSLCAG00010011574) #21	ENSLCAG00010011614	ENSLCAG00010011620 #22	ENSLCAG00010011629 #22	klhl4 (ENSLCAG00010011639)	PCDH11Y (ENSLCAG00010011678)	ENSLCAG00010011683	TSC22D3 (ENSLCAG00010011686)	MID2 (ENSLCAG00010011695)	ENSLCAG00010011709
Barramundi perch	MODERN SPECIES	39	KDM2A (ENSLCAG00010011367)	ANKRD13D (ENSLCAG00010011505)	ENSLCAG00010011510	ENSLCAG00010011514	ENSLCAG00010011515	ENSLCAG00010011521	CHRNA6 (ENSLCAG00010011528)	chrnb3b (ENSLCAG00010011540)	ENSLCAG00010011547	ENSLCAG00010011549	si:ch211-175m2.5 (ENSLCAG00010011552)	polr2g (ENSLCAG00010011557)	eef1g (ENSLCAG00010011574) #21	ENSLCAG00010011614	ENSLCAG00010011620 #22	ENSLCAG00010011629 #22	klhl4 (ENSLCAG00010011639)	PCDH11Y (ENSLCAG00010011678)	ENSLCAG00010011683	TSC22D3 (ENSLCAG00010011686)	MID2 (ENSLCAG00010011695)	ENSLCAG00010011709
Barramundi perch	MODERN SPECIES	506								jade1 (ENSLCAG00010005897)	asmt2 (ENSLCAG00010005893)	pgrmc2 (ENSLCAG00010005889)	ENSLCAG00010005876	ENSLCAG00010005859	cdca4 (ENSLCAG00010005852)	ENSLCAG00010005850	ahsa1b (ENSLCAG00010005843)	ENSLCAG00010005837 #22	ENSLCAG00010005826	exoc3l4 (ENSLCAG00010005823)	ENSLCAG00010005794
Seriola	ANCESTRAL SPECIES	32	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	230	cdc6 (ENSSDUG00000001387)	ENSSDUG00000001406	ENSSDUG00000001421	ENSSDUG00000001443	ENSSDUG00000001457	ENSSDUG00000001460	WIPF2 (ENSSDUG00000001468)	ENSSDUG00000001524	zgc:77929 (ENSSDUG00000001546)	npepps (ENSSDUG00000001565)	mrpl45 (ENSSDUG00000001672)	ENSSDUG00000001710	socs7 (ENSSDUG00000001759)	sp2 (ENSSDUG00000001919)	ENSSDUG00000001951	ENSSDUG00000002003 #22	mrpl4 (ENSSDUG00000002078)	ENSSDUG00000002115	ENSSDUG00000002179	ENSSDUG00000002236
Greater amberjack	MODERN SPECIES	174					ENSSDUG00000022080	ENSSDUG00000022071	rasgrp3 (ENSSDUG00000022059)	ENSSDUG00000022057	LTBP1 (ENSSDUG00000022026)	ttc27 (ENSSDUG00000021996)	ENSSDUG00000021989	BIRC6 (ENSSDUG00000021948)	yipf4 (ENSSDUG00000021935)	exo1 (ENSSDUG00000021926)	ENSSDUG00000021922	ENSSDUG00000021917 #22	ENSSDUG00000021914	PDZD8 (ENSSDUG00000021903)	slc18a2 (ENSSDUG00000021891)	kcnk18 (ENSSDUG00000021888)	vax1 (ENSSDUG00000021885)	atp6v1ba (ENSSDUG00000021875)	shtn1 (ENSSDUG00000021818)	eno4 (ENSSDUG00000021802)	ENSSDUG00000021800	ENSSDUG00000021791	hspa12a (ENSSDUG00000021769)	ENSSDUG00000021759	PNLIPRP2 (ENSSDUG00000021751)	pitx3 (ENSSDUG00000021736)	GBF1 (ENSSDUG00000021709)
Greater amberjack	MODERN SPECIES	113	stx3b (ENSSDUG00000014868)	KDM2A (ENSSDUG00000014916)	ANKRD13D (ENSSDUG00000014983)	ENSSDUG00000015014	ENSSDUG00000015026	ENSSDUG00000015039	ENSSDUG00000015081	CHRNA6 (ENSSDUG00000015090)	chrnb3b (ENSSDUG00000015100)	ENSSDUG00000015113	ENSSDUG00000015125	si:ch211-175m2.5 (ENSSDUG00000015150)	polr2g (ENSSDUG00000015179)	eef1g (ENSSDUG00000015202) #21	ENSSDUG00000015231	ENSSDUG00000015292 #22	klhl4 (ENSSDUG00000015744)	PCDH11Y (ENSSDUG00000015789)	TSC22D3 (ENSSDUG00000015815)	MID2 (ENSSDUG00000015849)	ENSSDUG00000015955	pmt (ENSSDUG00000015975)	ENSSDUG00000016001	ENSSDUG00000016023	SLC16A2 (ENSSDUG00000016058)	ENSSDUG00000016072	ENSSDUG00000016075	ENSSDUG00000016087	pola2 (ENSSDUG00000016133)	zdhhc24 (ENSSDUG00000016196)	ENSSDUG00000016231
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2880			ENSSLDG00000014517	cdc6 (ENSSLDG00000014558)	ENSSLDG00000014640	ENSSLDG00000014663	WIPF2 (ENSSLDG00000014674)	ENSSLDG00000014690	zgc:77929 (ENSSLDG00000014699)	npepps (ENSSLDG00000014713)	mrpl45 (ENSSLDG00000014753)	ENSSLDG00000014779	socs7 (ENSSLDG00000014824)	sp2 (ENSSLDG00000014913)	ENSSLDG00000014965	ENSSLDG00000015070 #22	mrpl4 (ENSSLDG00000015083)	ENSSLDG00000015124	ENSSLDG00000015164
Yellowtail amberjack	MODERN SPECIES	3195											rnf175 (ENSSLDG00000018381)	ENSSLDG00000018367	BIRC6 (ENSSLDG00000018161)	yipf4 (ENSSLDG00000018120)	exo1 (ENSSLDG00000018097)	ENSSLDG00000018088 #22	ENSSLDG00000018076	PDZD8 (ENSSLDG00000018047)	slc18a2 (ENSSLDG00000018015)	kcnk18 (ENSSLDG00000018002)	vax1 (ENSSLDG00000017988)	atp6v1ba (ENSSLDG00000017647)	shtn1 (ENSSLDG00000017599)	eno4 (ENSSLDG00000017570)	hspa12a (ENSSLDG00000017504)	PNLIPRP2 (ENSSLDG00000017476)	pitx3 (ENSSLDG00000017463)	GBF1 (ENSSLDG00000017384)	macroh2a2 (ENSSLDG00000017346)	ENSSLDG00000017333	ENSSLDG00000017314
Yellowtail amberjack	MODERN SPECIES	2961	ran (ENSSLDG00000001372)	stx3b (ENSSLDG00000001394)	KDM2A (ENSSLDG00000001472)	ANKRD13D (ENSSLDG00000001491)	ENSSLDG00000001507	ENSSLDG00000001521	ENSSLDG00000001570	ENSSLDG00000001622	CHRNA6 (ENSSLDG00000001647)	chrnb3b (ENSSLDG00000001703)	ENSSLDG00000001734	ENSSLDG00000001749	si:ch211-175m2.5 (ENSSLDG00000001798)	polr2g (ENSSLDG00000001822)	eef1g (ENSSLDG00000001834) #21	ENSSLDG00000001876 #22	klhl4 (ENSSLDG00000001955)	ENSSLDG00000002005	PCDH11Y (ENSSLDG00000002042)
Yellowtail amberjack	MODERN SPECIES	2905									asmt2 (ENSSLDG00000014667)	pgrmc2 (ENSSLDG00000014643)	LARP1B (ENSSLDG00000014613)	ENSSLDG00000014592	ahsa1b (ENSSLDG00000014565)	cdca4 (ENSSLDG00000014555)	si:dkey-177p2.6 (ENSSLDG00000014543)	ENSSLDG00000014518 #22	ENSSLDG00000014497	exoc3l4 (ENSSLDG00000014442)	ENSSLDG00000014336	vps29 (ENSSLDG00000014317)	eif5 (ENSSLDG00000014272)	mark3a (ENSSLDG00000014225)	ENSSLDG00000014211	ckba (ENSSLDG00000014183)	trmt61a (ENSSLDG00000014160)	bag5 (ENSSLDG00000014145)	coa8 (ENSSLDG00000014128)	klc1a (ENSSLDG00000014091)	zfyve21 (ENSSLDG00000014052)	ENSSLDG00000014003	BTBD6 (ENSSLDG00000013981)
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00940000165812	ENSGT00530000063841.a	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a	ENSGT00940000161805
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	19	cct4 (ENSCSEG00000020729)	pus10 (ENSCSEG00000020728)	ENSCSEG00000020726	WIPF2 (ENSCSEG00000020722)	MRPL21 (ENSCSEG00000020721)	zgc:77929 (ENSCSEG00000020719)	npepps (ENSCSEG00000020714)	mrpl45 (ENSCSEG00000020713)	ENSCSEG00000020706	socs7 (ENSCSEG00000020704)	sp2 (ENSCSEG00000020595)	sp2 (ENSCSEG00000020591)	ENSCSEG00000020585	ENSCSEG00000020582	mrpl4 (ENSCSEG00000020580)	ENSCSEG00000020578 #22	ENSCSEG00000020572	ENSCSEG00000020570	ptp4a1 (ENSCSEG00000020563)	lgsn (ENSCSEG00000020560)	ENSCSEG00000020558	myom2a (ENSCSEG00000020547)	hk1 (ENSCSEG00000020535)	ENSCSEG00000020532	dla (ENSCSEG00000020522)	RHOU (ENSCSEG00000020517)	ARHGAP19 (ENSCSEG00000020513)	slit1b (ENSCSEG00000020505)
Tongue sole	MODERN SPECIES	6	lman2 (ENSCSEG00000012470)	ENSCSEG00000012461	SEC24B (ENSCSEG00000012444)	TSTD2 (ENSCSEG00000012433)	NCBP1 (ENSCSEG00000012377)	SLC49A3 (ENSCSEG00000012355)	PCGF3 (ENSCSEG00000012338)	CPLX1 (ENSCSEG00000012329)	SMU1 (ENSCSEG00000012301)	CPXM1 (ENSCSEG00000012282)	ELP1 (ENSCSEG00000012230)	ARHGEF37 (ENSCSEG00000012208)	ENSCSEG00000012195	pde6a (ENSCSEG00000012160)	SLC26A2 (ENSCSEG00000012154)	ENSCSEG00000012144 #22	klhl4 (ENSCSEG00000012115)	ENSCSEG00000012101 #22	ENSCSEG00000012094	eef1g (ENSCSEG00000012081) #21	polr2g (ENSCSEG00000011991)	si:ch211-175m2.5 (ENSCSEG00000011974)	ENSCSEG00000011952	chrnb3b (ENSCSEG00000011925)	ENSCSEG00000011943	ENSCSEG00000011902	ENSCSEG00000011885	RNF38 (ENSCSEG00000011864)	ENSCSEG00000011855	ENSCSEG00000011847	reep2 (ENSCSEG00000011819)
Tongue sole	MODERN SPECIES	6	spon2a (ENSCSEG00000011706)	ENSCSEG00000011722	reep2 (ENSCSEG00000011819)	ENSCSEG00000011847	ENSCSEG00000011855	RNF38 (ENSCSEG00000011864)	ENSCSEG00000011885	ENSCSEG00000011902	ENSCSEG00000011943	chrnb3b (ENSCSEG00000011925)	ENSCSEG00000011952	si:ch211-175m2.5 (ENSCSEG00000011974)	polr2g (ENSCSEG00000011991)	eef1g (ENSCSEG00000012081) #21	ENSCSEG00000012094	ENSCSEG00000012101 #22	klhl4 (ENSCSEG00000012115)	ENSCSEG00000012144 #22	SLC26A2 (ENSCSEG00000012154)	pde6a (ENSCSEG00000012160)	ENSCSEG00000012195	ARHGEF37 (ENSCSEG00000012208)	ELP1 (ENSCSEG00000012230)	CPXM1 (ENSCSEG00000012282)	SMU1 (ENSCSEG00000012301)	CPLX1 (ENSCSEG00000012329)	PCGF3 (ENSCSEG00000012338)	SLC49A3 (ENSCSEG00000012355)	NCBP1 (ENSCSEG00000012377)	TSTD2 (ENSCSEG00000012433)	SEC24B (ENSCSEG00000012444)
Turbot	DUPLICATION
Turbot	MODERN SPECIES	4	ENSSMAG00000019658	ran (ENSSMAG00000000887)	ENSSMAG00000000897	ENSSMAG00000000953	ENSSMAG00000000962	ENSSMAG00000000979	ENSSMAG00000001032	ENSSMAG00000001048	ENSSMAG00000001072	ENSSMAG00000001099	ENSSMAG00000001123	ENSSMAG00000001143	ENSSMAG00000025037	eef1g (ENSSMAG00000001235) #21	ENSSMAG00000001273	ENSSMAG00000001298 #22	klhl4 (ENSSMAG00000018568)	ENSSMAG00000018523	ENSSMAG00000035355	ENSSMAG00000018444	ENSSMAG00000018401	ENSSMAG00000018370	ENSSMAG00000026631	ENSSMAG00000018359	ENSSMAG00000018342	ENSSMAG00000018339	ENSSMAG00000032165	ENSSMAG00000018291	ENSSMAG00000018289	ENSSMAG00000018265	ENSSMAG00000018242
Turbot	MODERN SPECIES	8	slc4a11 (ENSSMAG00000006939)	dnaaf9 (ENSSMAG00000006894)	ENSSMAG00000006880	ENSSMAG00000006870	foxi2 (ENSSMAG00000006868)	ENSSMAG00000006841	fgfr3 (ENSSMAG00000006801)	letm1 (ENSSMAG00000006721)	nsd2 (ENSSMAG00000006581)	jade1 (ENSSMAG00000006505)	asmt2 (ENSSMAG00000006433)	pgrmc2 (ENSSMAG00000006418)	ENSSMAG00000006347	ENSSMAG00000006294	ENSSMAG00000034451	ENSSMAG00000006250 #22	ENSSMAG00000024708	ENSSMAG00000006093	ENSSMAG00000006072	EIF5 (ENSSMAG00000006036)	mark3a (ENSSMAG00000005737)	ENSSMAG00000006025	ckba (ENSSMAG00000005705)	trmt61a (ENSSMAG00000005682)	bag5 (ENSSMAG00000005674)	coa8 (ENSSMAG00000005663)	klc1a (ENSSMAG00000005563)	ENSSMAG00000005543	ENSSMAG00000034872	ENSSMAG00000005510	ENSSMAG00000005498
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394.h.a	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	1	stx3b (ENSMAMG00000001629)	ENSMAMG00000001539	ENSMAMG00000001480	ENSMAMG00000001469	ENSMAMG00000001439	ENSMAMG00000026189	ENSMAMG00000001375	ENSMAMG00000001352	ENSMAMG00000001321	ENSMAMG00000001292	ENSMAMG00000001279	ENSMAMG00000001224	ENSMAMG00000001171	polr2g (ENSMAMG00000001188)	eef1g (ENSMAMG00000001122) #21	ENSMAMG00000001103 #22	klhl4 (ENSMAMG00000001041)	ENSMAMG00000001007	ENSMAMG00000028641	ENSMAMG00000000843	ENSMAMG00000000769	ENSMAMG00000000737	ENSMAMG00000000694	ENSMAMG00000000676	ENSMAMG00000028704	ENSMAMG00000000643	ENSMAMG00000000612	ENSMAMG00000000516	ENSMAMG00000000502	ENSMAMG00000000443	ENSMAMG00000000360
Zig-zag eel	MODERN SPECIES	14	foxi2 (ENSMAMG00000000089)	ENSMAMG00000028428	fgfr3 (ENSMAMG00000000087)	letm1 (ENSMAMG00000000086)	nsd2 (ENSMAMG00000000085)	jade1 (ENSMAMG00000000084)	asmt2 (ENSMAMG00000000083)	pgrmc2 (ENSMAMG00000000082)	ENSMAMG00000000081	ENSMAMG00000000080	ENSMAMG00000026494	ENSMAMG00000000078	ENSMAMG00000000077	ENSMAMG00000000076	ENSMAMG00000000074	ENSMAMG00000000075 #22	ENSMAMG00000000073	ENSMAMG00000025617	ENSMAMG00000000072	ENSMAMG00000000068	ENSMAMG00000000067	EIF5 (ENSMAMG00000000066)	mark3a (ENSMAMG00000000065)	ENSMAMG00000000064	ckba (ENSMAMG00000000063)	trmt61a (ENSMAMG00000000062)	bag5 (ENSMAMG00000000061)	coa8 (ENSMAMG00000000060)	klc1a (ENSMAMG00000000059)	ENSMAMG00000000058	ENSMAMG00000000057
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000175287	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394.h.a	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Siamese fighting fish	MODERN SPECIES	1	NDUFS8 (ENSBSLG00000008600)	ran (ENSBSLG00000008632)	stx3b (ENSBSLG00000008194)	KDM2A (ENSBSLG00000007492)	ANKRD13D (ENSBSLG00000006794)	ENSBSLG00000006346	ENSBSLG00000006292	ENSBSLG00000005861	ENSBSLG00000005854	ENSBSLG00000005819	chrnb3b (ENSBSLG00000005783)	ENSBSLG00000005770	si:ch211-175m2.5 (ENSBSLG00000005765)	polr2g (ENSBSLG00000005250)	eef1g (ENSBSLG00000005645) #21	AHNAK (ENSBSLG00000005211) #22	klhl4 (ENSBSLG00000005010)	PCDH11Y (ENSBSLG00000004915)	TSC22D3 (ENSBSLG00000004762)	MID2 (ENSBSLG00000004072)	ENSBSLG00000003960	ENSBSLG00000003759	SLC16A2 (ENSBSLG00000002940)	ENSBSLG00000002938	ENSBSLG00000002934	ENSBSLG00000002925	pola2 (ENSBSLG00000002678)	zdhhc24 (ENSBSLG00000002610)	ENSBSLG00000002588	dpf2l (ENSBSLG00000002549)	ENSBSLG00000002449
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	1	ENSATEG00000013040	ENSATEG00000013063	ENSATEG00000026687	ENSATEG00000013148	ENSATEG00000013169	ENSATEG00000013179	ENSATEG00000013215	ENSATEG00000013233	ENSATEG00000013262	ENSATEG00000025995	ENSATEG00000013288	ENSATEG00000013334	polr2g (ENSATEG00000013382)	eef1g (ENSATEG00000013408) #21	ENSATEG00000029134	ENSATEG00000028726 #22	klhl4 (ENSATEG00000013438)	ENSATEG00000026874	ENSATEG00000013485	ENSATEG00000013507	ENSATEG00000013538	ENSATEG00000013585	ENSATEG00000013628	ENSATEG00000028040	ENSATEG00000013662	ENSATEG00000013685	ENSATEG00000013695	ENSATEG00000026898	ENSATEG00000013716	ENSATEG00000013751	ENSATEG00000013797
Climbing perch	MODERN SPECIES	13	ENSATEG00000018218	foxi2 (ENSATEG00000018209)	ENSATEG00000018171	fgfr3 (ENSATEG00000018092)	letm1 (ENSATEG00000018058)	nsd2 (ENSATEG00000018035)	jade1 (ENSATEG00000017984)	asmt2 (ENSATEG00000017902)	pgrmc2 (ENSATEG00000017889)	ENSATEG00000017849	ENSATEG00000028173	ENSATEG00000017803	ENSATEG00000017795	ENSATEG00000017781	ENSATEG00000017717	ENSATEG00000017681 #22	ENSATEG00000017664	ENSATEG00000017628	ENSATEG00000017616	ENSATEG00000017542	EIF5 (ENSATEG00000017486)	mark3a (ENSATEG00000017350)	ENSATEG00000017323	ckba (ENSATEG00000017305)	trmt61a (ENSATEG00000017286)	bag5 (ENSATEG00000017272)	coa8 (ENSATEG00000029055)	klc1a (ENSATEG00000017146)	KLC1 (ENSATEG00000025754)	ENSATEG00000017116	ENSATEG00000017087
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Oryzias	ANCESTRAL SPECIES	17	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000163155.h.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Oryzias_b	ANCESTRAL SPECIES	33	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000163155.h.a	ENSGT00940000161394	ENSGT00940000163155.h.b	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	27	PLEKHH2 (ENSOMEG00000001287)	ENSOMEG00000001271	ENSOMEG00000001264	ENSOMEG00000001259	fancl (ENSOMEG00000001252)	ENSOMEG00000001243	RIMS1 (ENSOMEG00000001229)	asrgl1 (ENSOMEG00000001214) #24	asrgl1 (ENSOMEG00000001207) #24	OGFRL1 (ENSOMEG00000001203)	b3gat2 (ENSOMEG00000001201)	smap1 (ENSOMEG00000001198)	BIRC6 (ENSOMEG00000001194)	yipf4 (ENSOMEG00000001185)	exo1 (ENSOMEG00000001183)	ENSOMEG00000001181 #22	ENSOMEG00000001180	PDZD8 (ENSOMEG00000001178)	slc18a2 (ENSOMEG00000001173)	kcnk18 (ENSOMEG00000001169)	ENSOMEG00000001167	ENSOMEG00000001165	ENSOMEG00000001163	rtn4a (ENSOMEG00000001162)	ENSOMEG00000001160	ENSOMEG00000001157	ENSOMEG00000001152	ACYP2 (ENSOMEG00000001145)	ENSOMEG00000001143	cyp26c1 (ENSOMEG00000001140)	ENSOMEG00000001135
Indian medaka	MODERN SPECIES	16	KDM2A (ENSOMEG00000020569)	ANKRD13D (ENSOMEG00000020479)	ENSOMEG00000020412	ENSOMEG00000020397	ENSOMEG00000000532	ENSOMEG00000020368	ENSOMEG00000020304	CHRNA6 (ENSOMEG00000020264)	chrnb3b (ENSOMEG00000020215)	ENSOMEG00000020173	ENSOMEG00000020151	si:ch211-175m2.5 (ENSOMEG00000020121)	polr2g (ENSOMEG00000020086)	eef1g (ENSOMEG00000020060) #21	ENSOMEG00000020037	ENSOMEG00000020027 #22	klhl4 (ENSOMEG00000020007)	PCDH11Y (ENSOMEG00000019973)	TSC22D3 (ENSOMEG00000019945)	MID2 (ENSOMEG00000019908)	pmt (ENSOMEG00000019802)	zgc:152774 (ENSOMEG00000019746)	ENSOMEG00000019663	SLC16A2 (ENSOMEG00000019612)	ENSOMEG00000019589	ENSOMEG00000019548	ENSOMEG00000019536	ENSOMEG00000019516	pola2 (ENSOMEG00000019488)	zdhhc24 (ENSOMEG00000000779)	ENSOMEG00000019457
Javanese ricefish	DUPLICATION
Javanese ricefish	MODERN SPECIES		ENSOJAG00000016496	capn9 (ENSOJAG00000016557)	taf5l (ENSOJAG00000017027)	nup133 (ENSOJAG00000017093)	ENSOJAG00000018258	ENSOJAG00000018276	CCSAP (ENSOJAG00000018296)	cdc6 (ENSOJAG00000018306)	ENSOJAG00000018403	MRPL21 (ENSOJAG00000018424)	mrpl45 (ENSOJAG00000018748)	ENSOJAG00000018767	socs7 (ENSOJAG00000018901)	sp2 (ENSOJAG00000018969)	ENSOJAG00000000116	ENSOJAG00000000195 #22	mrpl4 (ENSOJAG00000000204)	ENSOJAG00000000250	SLC29A1 (ENSOJAG00000000290)	ENSOJAG00000000316	ENSOJAG00000000324	tmem178a (ENSOJAG00000000441)	soul4 (ENSOJAG00000000453)	eif4a3 (ENSOJAG00000000464)	ENSOJAG00000000489	opn6a (ENSOJAG00000000503)	EOLA1 (ENSOJAG00000000510)	ENSOJAG00000000536	ptp4a1 (ENSOJAG00000000548)	lgsn (ENSOJAG00000000560)	ENSOJAG00000000571
Javanese ricefish	MODERN SPECIES	1	KDM2A (ENSOJAG00000007358)	ANKRD13D (ENSOJAG00000008079)	ENSOJAG00000008876	ENSOJAG00000008898	ENSOJAG00000008933	ENSOJAG00000008960	ENSOJAG00000009014	CHRNA6 (ENSOJAG00000009035)	chrnb3b (ENSOJAG00000009134)	ENSOJAG00000009215	ENSOJAG00000009228	si:ch211-175m2.5 (ENSOJAG00000009283)	polr2g (ENSOJAG00000009296)	eef1g (ENSOJAG00000009317) #21	ENSOJAG00000009385	ENSOJAG00000009428 #22	klhl4 (ENSOJAG00000009860)	PCDH11Y (ENSOJAG00000010233)	TSC22D3 (ENSOJAG00000010257)	MID2 (ENSOJAG00000010306)	pmt (ENSOJAG00000010477)	ENSOJAG00000010583	ENSOJAG00000010638	SLC16A2 (ENSOJAG00000010958)	ENSOJAG00000010968	ENSOJAG00000010982	ENSOJAG00000010991	pola2 (ENSOJAG00000011043)	zdhhc24 (ENSOJAG00000011792)	ENSOJAG00000011796	dpf2l (ENSOJAG00000011814)
Oryzias_a	ANCESTRAL SPECIES	19	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000163155.h.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Chinese medaka	MODERN SPECIES	3119																ENSOSIG00000009543 #22
Japanese Medaka HdrR	DUPLICATION
Japanese Medaka HdrR	MODERN SPECIES		cdc6 (ENSORLG00000000130)	ENSORLG00000030207	ENSORLG00000025152	ENSORLG00000030263	ENSORLG00000030145	ENSORLG00000000122	MRPL21 (ENSORLG00000000120)	zgc:77929 (ENSORLG00000000119)	npepps (ENSORLG00000000111)	mrpl45 (ENSORLG00000000106)	ENSORLG00000025721	ENSORLG00000030230	ENSORLG00000027954	sp2 (ENSORLG00000000102)	ENSORLG00000000094	ENSORLG00000000089 #22	mrpl4 (ENSORLG00000000085)	ENSORLG00000000083	col9a1a (ENSORLG00000028143)	ptp4a1 (ENSORLG00000000081)	lgsn (ENSORLG00000000080)	ENSORLG00000000078	myom2a (ENSORLG00000000075)	HK1 (ENSORLG00000000069)	ENSORLG00000026423	dla (ENSORLG00000027625)	ENSORLG00000000064	ARHGAP19 (ENSORLG00000000062)	ENSORLG00000000055	ENSORLG00000027690	ENSORLG00000027792
Japanese Medaka HdrR	MODERN SPECIES	6	ENSORLG00000029783	ENSORLG00000020326	ENSORLG00000020295	ENSORLG00000024344	ENSORLG00000023128	ENSORLG00000029459	ENSORLG00000024925	rasgrp3 (ENSORLG00000023586)	ENSORLG00000025824	ttc27 (ENSORLG00000020348)	ENSORLG00000025679	BIRC6 (ENSORLG00000001771)	ENSORLG00000027507	yipf4 (ENSORLG00000001782)	exo1 (ENSORLG00000001791)	ENSORLG00000001801 #22	ENSORLG00000024248	PDZD8 (ENSORLG00000001816)	slc18a2 (ENSORLG00000001837)	kcnk18 (ENSORLG00000026109)	ENSORLG00000028112	ENSORLG00000022651	ENSORLG00000001868	ENSORLG00000022829	rtn4a (ENSORLG00000001886)	EML6 (ENSORLG00000001926)	ENSORLG00000023996	SPTBN1 (ENSORLG00000002006)	ACYP2 (ENSORLG00000029956)	ENSORLG00000002018	cyp26c1 (ENSORLG00000002036)
Japanese Medaka HdrR	MODERN SPECIES	1	stx3b (ENSORLG00000003426)	ENSORLG00000003398	ANKRD13D (ENSORLG00000003374)	ENSORLG00000003311	ENSORLG00000003300	ENSORLG00000022305	ENSORLG00000003296	ENSORLG00000003262	CHRNA6 (ENSORLG00000003243)	chrnb3b (ENSORLG00000003226)	ENSORLG00000028673	ENSORLG00000003203	si:ch211-175m2.5 (ENSORLG00000003159)	polr2g (ENSORLG00000003154)	eef1g (ENSORLG00000003130) #21	AHNAK (ENSORLG00000028884) #22	klhl4 (ENSORLG00000003079)	PCDH11Y (ENSORLG00000003051)	ENSORLG00000030496	ENSORLG00000021952	TSC22D3 (ENSORLG00000025379)	MID2 (ENSORLG00000002994)	pmt (ENSORLG00000002980)	zgc:152774 (ENSORLG00000002973)	ENSORLG00000002966	ENSORLG00000002925	ENSORLG00000002917	ENSORLG00000022743	ENSORLG00000002911	ENSORLG00000024657	pola2 (ENSORLG00000002903)
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a	ENSGT00940000161805
Turquoise killifish	MODERN SPECIES	1428																ENSNFUG00015016204 #22
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	168			SEPTIN9 (ENSKMAG00000013474)	ENSKMAG00000013418	ENSKMAG00000013346	ENSKMAG00000013314	znf207b (ENSKMAG00000013273)	rhbdl3 (ENSKMAG00000013213)	RHOT1 (ENSKMAG00000013102)	ENSKMAG00000013053	tefm (ENSKMAG00000013028)	ENSKMAG00000013011	socs7 (ENSKMAG00000012966)	sp2 (ENSKMAG00000012908)	ENSKMAG00000012832	ENSKMAG00000012788 #22	mrpl4 (ENSKMAG00000012769)	ENSKMAG00000012724	ptp4a1 (ENSKMAG00000012677)	lgsn (ENSKMAG00000012662)	ENSKMAG00000012648	myom2a (ENSKMAG00000012595)	hk1 (ENSKMAG00000012525)	ENSKMAG00000012472	dla (ENSKMAG00000012416)	ENSKMAG00000012396	ARHGAP19 (ENSKMAG00000012374)	ENSKMAG00000012355
Mangrove rivulus	MODERN SPECIES	3	degs1 (ENSKMAG00000014382)	fbxo28 (ENSKMAG00000014349)	polr1c (ENSKMAG00000014305)	zswim8 (ENSKMAG00000014137)	NDST2 (ENSKMAG00000014017)	FAM98A (ENSKMAG00000013971)	ENSKMAG00000013924	ENSKMAG00000013868	ENSKMAG00000013812	rasgrp3 (ENSKMAG00000013733)	LTBP1 (ENSKMAG00000013651)	ttc27 (ENSKMAG00000013582)	BIRC6 (ENSKMAG00000013425)	yipf4 (ENSKMAG00000013365)	exo1 (ENSKMAG00000013337)	ENSKMAG00000013313 #22	ENSKMAG00000013290	ENSKMAG00000013275
Mangrove rivulus	MODERN SPECIES	109	stx3b (ENSKMAG00000011507)	KDM2A (ENSKMAG00000011453)	ANKRD13D (ENSKMAG00000011404)	ENSKMAG00000011372	ENSKMAG00000011357	ENSKMAG00000011315	ENSKMAG00000011277	CHRNA6 (ENSKMAG00000011228)	chrnb3b (ENSKMAG00000011182)	ENSKMAG00000011161	ENSKMAG00000011142	si:ch211-175m2.5 (ENSKMAG00000011126)	polr2g (ENSKMAG00000011056)	eef1g (ENSKMAG00000011008) #21	ENSKMAG00000010989	ENSKMAG00000010981 #22	klhl4 (ENSKMAG00000010944)	PCDH11Y (ENSKMAG00000010896)	ENSKMAG00000010817	ENSKMAG00000010783
Cyprinodontoidei	ANCESTRAL SPECIES	19	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00940000165845.d	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT00940000153786.p	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00940000165845.d	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	19	ENSXMAG00000028364	capn9 (ENSXMAG00000016015)	taf5l (ENSXMAG00000023303)	nup133 (ENSXMAG00000014130)	ENSXMAG00000029289	cdc6 (ENSXMAG00000014169)	WIPF2 (ENSXMAG00000014184)	mrpl21 (ENSXMAG00000020294)	zgc:77929 (ENSXMAG00000020296)	npepps (ENSXMAG00000014198)	mrpl45 (ENSXMAG00000014301)	ENSXMAG00000022613	socs7 (ENSXMAG00000014313)	sp2 (ENSXMAG00000014321)	ENSXMAG00000009446	ENSXMAG00000023544 #22	mrpl4 (ENSXMAG00000030102)	ENSXMAG00000014356	col9a1a (ENSXMAG00000014357)	ptp4a1 (ENSXMAG00000014405)	lgsn (ENSXMAG00000014412)	ENSXMAG00000014414	myom2a (ENSXMAG00000014415)	hk1 (ENSXMAG00000008211)	ENSXMAG00000014452	dla (ENSXMAG00000014461)	ENSXMAG00000030012	ENSXMAG00000014472	slit1b (ENSXMAG00000014475)	ENSXMAG00000027531	MORN4 (ENSXMAG00000005648)
Platyfish	MODERN SPECIES	15	stx3b (ENSXMAG00000025903)	KDM2A (ENSXMAG00000024963)	ANKRD13D (ENSXMAG00000009988)	ENSXMAG00000010004	ENSXMAG00000026374	ENSXMAG00000027387	ENSXMAG00000010008	ENSXMAG00000010018	CHRNA6 (ENSXMAG00000010024)	chrnb3b (ENSXMAG00000010036)	ENSXMAG00000021034	ENSXMAG00000010045	si:ch211-175m2.5 (ENSXMAG00000010061)	polr2g (ENSXMAG00000010063)	eef1g (ENSXMAG00000010070) #21	ENSXMAG00000022203 #22	klhl4 (ENSXMAG00000009652)	PCDH11Y (ENSXMAG00000026364)	ENSXMAG00000029824	ENSXMAG00000028001	ENSXMAG00000027426	TSC22D3 (ENSXMAG00000024707)	MID2 (ENSXMAG00000022296)	pmt (ENSXMAG00000025348)	zgc:152774 (ENSXMAG00000009722)	ENSXMAG00000009727	SLC16A2 (ENSXMAG00000009742)	ENSXMAG00000020185	ENSXMAG00000026253	ENSXMAG00000021178	ENSXMAG00000022274
Platyfish	MODERN SPECIES	10	foxi2 (ENSXMAG00000025063)	ENSXMAG00000004701	ENSXMAG00000021715	fgfr3 (ENSXMAG00000026115)	letm1 (ENSXMAG00000008107)	ENSXMAG00000026440	nsd2 (ENSXMAG00000008116)	jade1 (ENSXMAG00000008136)	asmt2 (ENSXMAG00000009925)	pgrmc2 (ENSXMAG00000024645)	ENSXMAG00000008150	ENSXMAG00000022268	ahsa1b (ENSXMAG00000022100)	cdca4 (ENSXMAG00000019446)	si:dkey-177p2.6 (ENSXMAG00000008172)	ENSXMAG00000024007 #22	ENSXMAG00000025271	exoc3l4 (ENSXMAG00000014925)	ENSXMAG00000014914	vps29 (ENSXMAG00000024591)	eif5 (ENSXMAG00000025924)	mark3a (ENSXMAG00000014822)	arg2 (ENSXMAG00000014792)	vti1b (ENSXMAG00000014780)	rdh12 (ENSXMAG00000020818)	zfyve26 (ENSXMAG00000014723)	si:ch211-10a23.2 (ENSXMAG00000014721)	plek2 (ENSXMAG00000014691)	TC2N (ENSXMAG00000014675)	fbln5 (ENSXMAG00000014661)	trip11 (ENSXMAG00000014645)
Poecilia	ANCESTRAL SPECIES	34	ENSGT00940000153786.p	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000163155.h.b	ENSGT00390000009327	ENSGT00940000165845.d	ENSGT00940000170012.a	ENSGT00940000161394	ENSGT00390000016784
Guppy	MODERN SPECIES	440	ENSPREG00000017120	ANKRD13D (ENSPREG00000017062)	ENSPREG00000017032	ENSPREG00000017003	ENSPREG00000016964	ENSPREG00000016927	ENSPREG00000016876	ENSPREG00000016849	chrnb3b (ENSPREG00000016788)	ENSPREG00000016769	ENSPREG00000016730	si:ch211-175m2.5 (ENSPREG00000016660)	polr2g (ENSPREG00000016633)	eef1g (ENSPREG00000016570) #21	ENSPREG00000016558	ENSPREG00000016539 #22	klhl4 (ENSPREG00000016500)	PCDH11Y (ENSPREG00000016422)	TSC22D3 (ENSPREG00000016394)	MID2 (ENSPREG00000016327)	pmt (ENSPREG00000016278)	ENSPREG00000016244	ENSPREG00000016212	SLC16A2 (ENSPREG00000016201)	ENSPREG00000016188	ENSPREG00000016165	ENSPREG00000016148	ENSPREG00000016125	pola2 (ENSPREG00000016051)	zdhhc24 (ENSPREG00000016015)	ENSPREG00000015998
NAME_6	ANCESTRAL SPECIES	78	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000158966.g	ENSGT00940000153342.b	ENSGT00390000011529	ENSGT00390000003512.r	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00940000154902 #22	ENSGT00390000014512	ENSGT00390000008848	ENSGT00940000157935.a	ENSGT00940000154406	ENSGT00390000013639	ENSGT00940000157889.g.b	ENSGT00940000157057.e	ENSGT00950000182787.A.a	ENSGT00940000160859
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	952					ENSPLAG00000013204	cdc6 (ENSPLAG00000013193)	WIPF2 (ENSPLAG00000013180)	mrpl21 (ENSPLAG00000013159)	zgc:77929 (ENSPLAG00000000307)	npepps (ENSPLAG00000013112)	mrpl45 (ENSPLAG00000013012)	ENSPLAG00000013004	socs7 (ENSPLAG00000012964)	sp2 (ENSPLAG00000012945)	ENSPLAG00000012891	ENSPLAG00000012875 #22	mrpl4 (ENSPLAG00000012864)	ENSPLAG00000012846
Sailfin molly	MODERN SPECIES	983												ttc27 (ENSPLAG00000023976)	ENSPLAG00000023975	yipf4 (ENSPLAG00000023974)	exo1 (ENSPLAG00000023973)	ENSPLAG00000023972 #22	ENSPLAG00000023971	PDZD8 (ENSPLAG00000023970)
Sailfin molly	MODERN SPECIES					ENSPLAG00000022355	ANKRD13D (ENSPLAG00000022366)	ENSPLAG00000022372	ENSPLAG00000022407	ENSPLAG00000022434	ENSPLAG00000022458	chrnb3b (ENSPLAG00000022481)	ENSPLAG00000022505	si:ch211-175m2.5 (ENSPLAG00000022530)	polr2g (ENSPLAG00000022848)	eef1g (ENSPLAG00000022878) #21	ENSPLAG00000022893	ENSPLAG00000022922 #22	klhl4 (ENSPLAG00000022944)	PCDH11Y (ENSPLAG00000022962)	TSC22D3 (ENSPLAG00000022990)	MID2 (ENSPLAG00000023030)	pmt (ENSPLAG00000023065)	ENSPLAG00000023071	ENSPLAG00000023079	ENSPLAG00000023086	SLC16A2 (ENSPLAG00000023096)	ENSPLAG00000023108	ENSPLAG00000023109	ENSPLAG00000023122	ENSPLAG00000023164	pola2 (ENSPLAG00000023171)	zdhhc24 (ENSPLAG00000023177)
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	608	ENSPFOG00000021943	capn9 (ENSPFOG00000011782)	taf5l (ENSPFOG00000012282)	nup133 (ENSPFOG00000012316)	ENSPFOG00000012606	cdc6 (ENSPFOG00000012621)	WIPF2 (ENSPFOG00000024468)	mrpl21 (ENSPFOG00000020119)	zgc:77929 (ENSPFOG00000020121)	npepps (ENSPFOG00000012738)	mrpl45 (ENSPFOG00000012935)	ENSPFOG00000012987	socs7 (ENSPFOG00000013037)	sp2 (ENSPFOG00000013068)	ENSPFOG00000013118	ENSPFOG00000024740 #22	mrpl4 (ENSPFOG00000013329)	ENSPFOG00000013332	col9a1a (ENSPFOG00000013368)	ptp4a1 (ENSPFOG00000013584)	lgsn (ENSPFOG00000013604)	ENSPFOG00000024637	myom2a (ENSPFOG00000013639)	hk1 (ENSPFOG00000014096)	ZBTB45 (ENSPFOG00000014275)
Amazon molly	MODERN SPECIES	287																ENSPFOG00000024582 #22	klhl4 (ENSPFOG00000011715)	PCDH11Y (ENSPFOG00000011680)	ENSPFOG00000011677	MID2 (ENSPFOG00000011612)	pmt (ENSPFOG00000011558)	zgc:152774 (ENSPFOG00000011503)	ENSPFOG00000011322	SLC16A2 (ENSPFOG00000011253)	ENSPFOG00000020257	ENSPFOG00000011235	ENSPFOG00000024769	ENSPFOG00000022259	ENSPFOG00000023845	pola2 (ENSPFOG00000010993)	zdhhc24 (ENSPFOG00000010967)
NAME_4	ANCESTRAL SPECIES	34	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00940000169057	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00940000165845.d	ENSGT00940000163155.h.a	ENSGT00390000016784	ENSGT00940000164006
Mummichog	MODERN SPECIES	2228											ENSFHEG00000003093	si:ch211-175m2.5 (ENSFHEG00000003080)	polr2g (ENSFHEG00000003053)	eef1g (ENSFHEG00000003042) #21	ENSFHEG00000003031	ENSFHEG00000003028 #22	klhl4 (ENSFHEG00000003015)	PCDH11Y (ENSFHEG00000002999)	ENSFHEG00000002991	TSC22D3 (ENSFHEG00000002983)	ENSFHEG00000002956	MID2 (ENSFHEG00000002944)	ENSFHEG00000002904	pmt (ENSFHEG00000002901)	ENSFHEG00000002886	ENSFHEG00000002872	SLC16A2 (ENSFHEG00000002812)	ENSFHEG00000002804	ENSFHEG00000002799	ENSFHEG00000002793	ENSFHEG00000002782
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1321												socs7 (ENSCVAG00000017385)	sp2 (ENSCVAG00000017364)	ENSCVAG00000017337	ENSCVAG00000017326	ENSCVAG00000017307 #22	mrpl4 (ENSCVAG00000017296)
Sheepshead minnow	MODERN SPECIES	634															ENSCVAG00000007439	ENSCVAG00000007336 #22	ENSCVAG00000007328	PDZD8 (ENSCVAG00000007318)	slc18a2 (ENSCVAG00000000201)	kcnk18 (ENSCVAG00000007281)	vax1 (ENSCVAG00000007273)	atp6v1ba (ENSCVAG00000007246)	shtn1 (ENSCVAG00000007208)	hspa12a (ENSCVAG00000007174)	ENSCVAG00000006723	ENSCVAG00000006720
Sheepshead minnow	MODERN SPECIES	242	stx3b (ENSCVAG00000020610)	ENSCVAG00000020722	ANKRD13D (ENSCVAG00000020805)	ENSCVAG00000020818	ENSCVAG00000000537	ENSCVAG00000020896	ENSCVAG00000020917	CHRNA6 (ENSCVAG00000020981)	chrnb3b (ENSCVAG00000021014)	ENSCVAG00000021023	ENSCVAG00000021047	si:ch211-175m2.5 (ENSCVAG00000021080)	polr2g (ENSCVAG00000021090)	eef1g (ENSCVAG00000021121) #21	ENSCVAG00000021131	ENSCVAG00000021217 #22	klhl4 (ENSCVAG00000021280)	PCDH11Y (ENSCVAG00000021320)
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Pomacentridae	ANCESTRAL SPECIES	67	ENSGT00940000153342.b	ENSGT01090000260226	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00530000063498.A	ENSGT00940000155557.jc.b	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00940000154902 #22	ENSGT00390000014512.d	ENSGT00390000008848	ENSGT00940000157935.a	ENSGT00940000154406	ENSGT00390000013639	ENSGT00940000157889.g.b	ENSGT00940000157057.e	ENSGT00950000182787.A.a	ENSGT00940000160859	ENSGT00940000159781.b	ENSGT00940000156644.e.a	ENSGT00940000157331.b.a	ENSGT00940000157322.b.b	ENSGT00940000162611.a.a.a	ENSGT00940000162611.b
Bicolor damselfish	MODERN SPECIES	588						cdc6 (ENSSPAG00000010459)	WIPF2 (ENSSPAG00000010438)	MRPL21 (ENSSPAG00000010420)	zgc:77929 (ENSSPAG00000010415)	npepps (ENSSPAG00000010341)	mrpl45 (ENSSPAG00000010323)	ENSSPAG00000010294	socs7 (ENSSPAG00000010228)	sp2 (ENSSPAG00000010203)	ENSSPAG00000010189	ENSSPAG00000010133 #22	mrpl4 (ENSSPAG00000010120)	ENSSPAG00000010092	ENSSPAG00000010086	col9a1a (ENSSPAG00000010054)	ptp4a1 (ENSSPAG00000010025)	lgsn (ENSSPAG00000010008)	ENSSPAG00000010002	myom2a (ENSSPAG00000009941)	hk1 (ENSSPAG00000009905)	ZBTB45 (ENSSPAG00000009891)	dla (ENSSPAG00000009866)	ENSSPAG00000009850	ENSSPAG00000009789	ENSSPAG00000009769	SLIT1 (ENSSPAG00000009672)
Pomacentridae_A	ANCESTRAL SPECIES	20	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590.e	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a
Amphiprion	ANCESTRAL SPECIES	17	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590.e	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00390000016784	ENSGT00940000164006	ENSGT01030000234532.A.a.a.a.a.b	ENSGT00940000155070.a.b.a	ENSGT00940000163454.a.a.a.b.a.b
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	1302						cdc6 (ENSAOCG00000012774)	WIPF2 (ENSAOCG00000000790)	MRPL21 (ENSAOCG00000012726)	zgc:77929 (ENSAOCG00000012677)	npepps (ENSAOCG00000012655)	mrpl45 (ENSAOCG00000012578)	ENSAOCG00000012492	socs7 (ENSAOCG00000012167)	sp2 (ENSAOCG00000012088)	ENSAOCG00000012031	ENSAOCG00000011986 #22
Clown anemonefish	MODERN SPECIES	564					cdc42ep3 (ENSAOCG00000004200)	ENSAOCG00000004211	cyp1b1 (ENSAOCG00000004220)	nanp (ENSAOCG00000004224)	polr1b (ENSAOCG00000004249)	rasgrp3 (ENSAOCG00000004275)	LTBP1 (ENSAOCG00000004319)	ttc27 (ENSAOCG00000004346)	BIRC6 (ENSAOCG00000004455)	yipf4 (ENSAOCG00000004491)	exo1 (ENSAOCG00000004515)	ENSAOCG00000004551 #22	ENSAOCG00000002094	PDZD8 (ENSAOCG00000004592)	slc18a2 (ENSAOCG00000004618)	ENSAOCG00000004643	vax1 (ENSAOCG00000004654)	atp6v1ba (ENSAOCG00000004694)	shtn1 (ENSAOCG00000004712)	eno4 (ENSAOCG00000004756)	hspa12a (ENSAOCG00000004810)	PNLIPRP2 (ENSAOCG00000004838)	pitx3 (ENSAOCG00000004900)	GBF1 (ENSAOCG00000005026)	macroh2a2 (ENSAOCG00000005073)	ENSAOCG00000005132	ENSAOCG00000005160
Clown anemonefish	MODERN SPECIES	983											ENSAOCG00000014268	ENSAOCG00000014221	ahsa1b (ENSAOCG00000014200)	cdca4 (ENSAOCG00000014162)	si:dkey-177p2.6 (ENSAOCG00000014156)	ENSAOCG00000014140 #22	ENSAOCG00000014117
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000005183	nup133 (ENSAPEG00000005220)	ACTA1 (ENSAPEG00000005287)	CCSAP (ENSAPEG00000005321)	cdc6 (ENSAPEG00000005339)	cdc6 (ENSAPEG00000005384)	WIPF2 (ENSAPEG00000005487)	MRPL21 (ENSAPEG00000005507)	zgc:77929 (ENSAPEG00000005535)	npepps (ENSAPEG00000005556)	mrpl45 (ENSAPEG00000005671)	ENSAPEG00000005753	socs7 (ENSAPEG00000006016)	sp2 (ENSAPEG00000006091)	ENSAPEG00000006126	ENSAPEG00000006143 #22	mrpl4 (ENSAPEG00000006208)	ENSAPEG00000006222	col9a1a (ENSAPEG00000006274)	ENSAPEG00000006350	pus10 (ENSAPEG00000006406)	cct4 (ENSAPEG00000006444)	FAM161A (ENSAPEG00000006516)	XPO1 (ENSAPEG00000006583)	USP34 (ENSAPEG00000006673)	commd1 (ENSAPEG00000006933)	b3gnt2a (ENSAPEG00000006948)	ENSAPEG00000006958	otx2a (ENSAPEG00000006978)	mdh1aa (ENSAPEG00000007003)	ugp2a (ENSAPEG00000007049)
Orange clownfish	MODERN SPECIES	4	stx3b (ENSAPEG00000011668)	KDM2A (ENSAPEG00000011558)	ANKRD13D (ENSAPEG00000011535)	ENSAPEG00000011517	ENSAPEG00000011485	ENSAPEG00000011471	ENSAPEG00000011426	ENSAPEG00000011394	CHRNA6 (ENSAPEG00000011360)	chrnb3b (ENSAPEG00000011326)	ENSAPEG00000011275	si:ch211-175m2.5 (ENSAPEG00000011239)	polr2g (ENSAPEG00000011229)	eef1g (ENSAPEG00000011179) #21	ENSAPEG00000011155	ENSAPEG00000011114 #22	klhl4 (ENSAPEG00000011066)	PCDH11Y (ENSAPEG00000011028)	TSC22D3 (ENSAPEG00000010968)	MID2 (ENSAPEG00000010910)	pmt (ENSAPEG00000010832)	ENSAPEG00000010809	ENSAPEG00000010803	ENSAPEG00000010787	SLC16A2 (ENSAPEG00000010742)	ENSAPEG00000010733	ENSAPEG00000010722	pola2 (ENSAPEG00000010708)	zdhhc24 (ENSAPEG00000010700)	ENSAPEG00000010681	dpf2l (ENSAPEG00000010630)
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	354											ttc27 (ENSAPOG00000009088)	ENSAPOG00000009104	BIRC6 (ENSAPOG00000009525)	yipf4 (ENSAPOG00000009576)	exo1 (ENSAPOG00000009757)	ENSAPOG00000009791 #22	ENSAPOG00000009801	PDZD8 (ENSAPOG00000009843)	ENSAPOG00000009863	GRM4 (ENSAPOG00000009946)	nudt3b (ENSAPOG00000009989)	rps10 (ENSAPOG00000010000)	pacsin1b (ENSAPOG00000010031)	SPDEF (ENSAPOG00000010069)
Spiny chromis	MODERN SPECIES	87	kif20a (ENSAPOG00000006379)	cdc23 (ENSAPOG00000006290)	ENSAPOG00000006231	slc25a5 (ENSAPOG00000006216)	zbtb20 (ENSAPOG00000006197)	DLG4 (ENSAPOG00000006156)	ephb4a (ENSAPOG00000006005)	KCNAB3 (ENSAPOG00000005907)	neu3.1 (ENSAPOG00000005320)	ENSAPOG00000005302	chrdl2 (ENSAPOG00000005282)	spag7 (ENSAPOG00000005268)	defbl2 (ENSAPOG00000005234)	mepcea (ENSAPOG00000005209)	ENSAPOG00000005192	ENSAPOG00000005148 #22	klhl4 (ENSAPOG00000005078)
Cichlidae	ANCESTRAL SPECIES	8	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Pseudocrenilabrinae	ANCESTRAL SPECIES	17	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Nile tilapia	DUPLICATION
Nile tilapia	MODERN SPECIES	11	ran (ENSONIG00000005139)	stx3b (ENSONIG00000005143)	KDM2A (ENSONIG00000005149)	ANKRD13D (ENSONIG00000005155)	ENSONIG00000029875	ENSONIG00000029373	ENSONIG00000005162	ENSONIG00000005165	CHRNA6 (ENSONIG00000005170)	chrnb3b (ENSONIG00000005174)	ENSONIG00000037063	ENSONIG00000005176	si:ch211-175m2.5 (ENSONIG00000042517)	polr2g (ENSONIG00000005183)	eef1g (ENSONIG00000005190) #21	AHNAK (ENSONIG00000032948) #22	klhl4 (ENSONIG00000005202)	PCDH11Y (ENSONIG00000005209)	ENSONIG00000027813	TSC22D3 (ENSONIG00000031070)	MID2 (ENSONIG00000005217)	pmt (ENSONIG00000005219)	ENSONIG00000005225	ENSONIG00000005228	SLC16A2 (ENSONIG00000005239)	ENSONIG00000032887	ENSONIG00000005246	ENSONIG00000005248	ENSONIG00000037869	pola2 (ENSONIG00000005250)	zdhhc24 (ENSONIG00000005259)
Nile tilapia	MODERN SPECIES	10	ENSONIG00000012342	ENSONIG00000029006	foxi2 (ENSONIG00000012345)	ENSONIG00000033578	fgfr3 (ENSONIG00000012350)	letm1 (ENSONIG00000012371)	nsd2 (ENSONIG00000012377)	jade1 (ENSONIG00000012379)	asmt2 (ENSONIG00000036240)	pgrmc2 (ENSONIG00000033876)	ENSONIG00000012386	ENSONIG00000030302	ahsa1b (ENSONIG00000012392)	cdca4 (ENSONIG00000021035)	si:dkey-177p2.6 (ENSONIG00000012393)	ENSONIG00000040212 #22	ENSONIG00000034348	exoc3l4 (ENSONIG00000012398)	ENSONIG00000012400	ENSONIG00000012403	ENSONIG00000042609	vps29 (ENSONIG00000012406)	eif5 (ENSONIG00000012407)	mark3a (ENSONIG00000012410)	ckba (ENSONIG00000012417)	trmt61a (ENSONIG00000012420)	bag5 (ENSONIG00000012424)	coa8 (ENSONIG00000012426)	klc1a (ENSONIG00000012429)	zfyve21 (ENSONIG00000012439)	BTBD6 (ENSONIG00000001672)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	24	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000160294	ENSGT00940000159450	ENSGT00940000162696.c.a	ENSGT00940000161394	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	443	ENSNBRG00000004039	capn9 (ENSNBRG00000004057)	taf5l (ENSNBRG00000004107)	nup133 (ENSNBRG00000004141)	ENSNBRG00000004190	ENSNBRG00000004202	ENSNBRG00000004226	mrpl21 (ENSNBRG00000004248)	zgc:77929 (ENSNBRG00000004263)	npepps (ENSNBRG00000004278)	mrpl45 (ENSNBRG00000004354)	ENSNBRG00000004376	socs7 (ENSNBRG00000004489)	sp2 (ENSNBRG00000004524)	ENSNBRG00000004583	ENSNBRG00000004758 #22	mrpl4 (ENSNBRG00000004804)	ENSNBRG00000004814	ptp4a1 (ENSNBRG00000004831)	lgsn (ENSNBRG00000004858)	ENSNBRG00000004865	myom2a (ENSNBRG00000004940)	hk1 (ENSNBRG00000005272)	ENSNBRG00000005305	dla (ENSNBRG00000005342)	RHOU (ENSNBRG00000005470)	ARHGAP19 (ENSNBRG00000005483)	slit1b (ENSNBRG00000005548)	ENSNBRG00000006539	ENSNBRG00000006555	hoga1 (ENSNBRG00000006578)
Lyretail cichlid	MODERN SPECIES	468							nt5c2a (ENSNBRG00000019435)	borcs7 (ENSNBRG00000019403)	cyp17a1 (ENSNBRG00000019382)	RNF166 (ENSNBRG00000019353)	ctu2 (ENSNBRG00000019315)	cdk1 (ENSNBRG00000019289)	ncapd3 (ENSNBRG00000019145)	yipf4 (ENSNBRG00000019091)	exo1 (ENSNBRG00000019048)	ENSNBRG00000019028 #22	ENSNBRG00000019022	PDZD8 (ENSNBRG00000018994)	slc18a2 (ENSNBRG00000018965)	vax1 (ENSNBRG00000018945)	atp6v1ba (ENSNBRG00000018916)	shtn1 (ENSNBRG00000018884)	eno4 (ENSNBRG00000018850)	hspa12a (ENSNBRG00000018638)	pitx3 (ENSNBRG00000018586)	GBF1 (ENSNBRG00000018531)	macroh2a2 (ENSNBRG00000018499)	ENSNBRG00000018492	CALHM3 (ENSNBRG00000018477)
Lyretail cichlid	MODERN SPECIES	292	ran (ENSNBRG00000004675)	stx3b (ENSNBRG00000004369)	KDM2A (ENSNBRG00000004245)	ANKRD13D (ENSNBRG00000004170)	ENSNBRG00000004156	ENSNBRG00000004135	ENSNBRG00000004100	ENSNBRG00000004073	CHRNA6 (ENSNBRG00000004042)	chrnb3b (ENSNBRG00000004023)	ENSNBRG00000004008	ENSNBRG00000003966	si:ch211-175m2.5 (ENSNBRG00000003961)	polr2g (ENSNBRG00000003949)	eef1g (ENSNBRG00000003913) #21	ENSNBRG00000003878 #22	klhl4 (ENSNBRG00000003832)	PCDH11Y (ENSNBRG00000003796)	TSC22D3 (ENSNBRG00000003772)	MID2 (ENSNBRG00000003721)	pmt (ENSNBRG00000003675)	ENSNBRG00000003636	ENSNBRG00000003623	ENSNBRG00000003398	SLC16A2 (ENSNBRG00000003367)	ENSNBRG00000003355	ENSNBRG00000003351	ENSNBRG00000003329	ENSNBRG00000003310	pola2 (ENSNBRG00000003179)	zdhhc24 (ENSNBRG00000003137)
Haplochromini	ANCESTRAL SPECIES	14	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000170012.a	ENSGT00940000161394	ENSGT00940000162696.c.a	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784	ENSGT00940000164006
Burton s mouthbrooder	MODERN SPECIES	273	stx3b (ENSHBUG00000010925)	KDM2A (ENSHBUG00000011047)	ANKRD13D (ENSHBUG00000011074)	ENSHBUG00000011091	ENSHBUG00000011096	ENSHBUG00000011127	ENSHBUG00000011152	CHRNA6 (ENSHBUG00000011159)	chrnb3b (ENSHBUG00000011181)	ENSHBUG00000011189	ENSHBUG00000011224	si:ch211-175m2.5 (ENSHBUG00000011287)	polr2g (ENSHBUG00000011421)	eef1g (ENSHBUG00000011457) #21	ENSHBUG00000011477	ENSHBUG00000011502 #22	klhl4 (ENSHBUG00000011532)	PCDH11Y (ENSHBUG00000011581)	TSC22D3 (ENSHBUG00000011618)	MID2 (ENSHBUG00000011689)	pmt (ENSHBUG00000000319)	ENSHBUG00000011750	ENSHBUG00000011768	SLC16A2 (ENSHBUG00000011774)	ENSHBUG00000011781	ENSHBUG00000011790	ENSHBUG00000011804	ENSHBUG00000011809	ENSHBUG00000011822	pola2 (ENSHBUG00000011889)	zdhhc24 (ENSHBUG00000011917)
Haplochromini_A	ANCESTRAL SPECIES	13	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000170012.a	ENSGT00940000161394	ENSGT00940000162696.c.a	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784
P. nyererei	DUPLICATION
P. nyererei	MODERN SPECIES	492	yipf3 (ENSPNYG00000002133)	ncoa4 (ENSPNYG00000002178)	ENSPNYG00000002257	fbxw4 (ENSPNYG00000002264)	fgf8a (ENSPNYG00000002299)	ENSPNYG00000002573	nt5c2a (ENSPNYG00000002605)	borcs7 (ENSPNYG00000002686)	cyp17a1 (ENSPNYG00000002693)	RNF166 (ENSPNYG00000002749)	ctu2 (ENSPNYG00000002790)	cdk1 (ENSPNYG00000002812)	ncapd3 (ENSPNYG00000002918)	yipf4 (ENSPNYG00000003344)	exo1 (ENSPNYG00000003414)	ENSPNYG00000003466 #22	ENSPNYG00000003492	PDZD8 (ENSPNYG00000003509)	slc18a2 (ENSPNYG00000003555)	kcnk18 (ENSPNYG00000003604)	ENSPNYG00000003648	vax1 (ENSPNYG00000003674)	atp6v1ba (ENSPNYG00000003696)	shtn1 (ENSPNYG00000003751)	eno4 (ENSPNYG00000003792)	hspa12a (ENSPNYG00000003856)	pitx3 (ENSPNYG00000003909)	GBF1 (ENSPNYG00000003951)	ENSPNYG00000004112	macroh2a2 (ENSPNYG00000004133)
P. nyererei	MODERN SPECIES	303	ran (ENSPNYG00000016770)	stx3b (ENSPNYG00000016620)	KDM2A (ENSPNYG00000016466)	ANKRD13D (ENSPNYG00000016384)	ENSPNYG00000016354	ENSPNYG00000016343	ENSPNYG00000016294	ENSPNYG00000016266	CHRNA6 (ENSPNYG00000016236)	chrnb3b (ENSPNYG00000016218)	ENSPNYG00000016201	ENSPNYG00000016173	si:ch211-175m2.5 (ENSPNYG00000016152)	polr2g (ENSPNYG00000016136)	eef1g (ENSPNYG00000016103) #21	ENSPNYG00000016074 #22	klhl4 (ENSPNYG00000016050)	PCDH11Y (ENSPNYG00000016030)	TSC22D3 (ENSPNYG00000016006)	MID2 (ENSPNYG00000015939)	pmt (ENSPNYG00000015885)	ENSPNYG00000015864	ENSPNYG00000015793	SLC16A2 (ENSPNYG00000015773)	ENSPNYG00000015747	ENSPNYG00000015734	ENSPNYG00000015721	ENSPNYG00000015710	pola2 (ENSPNYG00000015670)	zdhhc24 (ENSPNYG00000015654)	ENSPNYG00000015590
Haplochromini_B	ANCESTRAL SPECIES	7	ENSGT01030000234627.a.b.a.a.b.b	ENSGT00940000155484.a	ENSGT00950000182928.A.a.b.b	ENSGT00530000063841.a	ENSGT00940000165812	ENSGT00950000183041.B.h	ENSGT00940000156228.o	ENSGT00940000158417.a	ENSGT00940000158062.f.b	ENSGT00940000156892.a	ENSGT01030000234788	ENSGT00940000154617.A.a.b	ENSGT00390000015138	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000154902 #22	ENSGT00940000165200	ENSGT00940000159818	ENSGT00940000158335	ENSGT00940000156656	ENSGT00940000159460	ENSGT00390000000610	ENSGT00940000166590	ENSGT00940000157994	ENSGT00940000159450	ENSGT00940000170012.a	ENSGT00940000161394	ENSGT00940000162696.c.a	ENSGT00940000163155.h	ENSGT00390000009327	ENSGT00390000016784
Eastern happy	DUPLICATION
Eastern happy	MODERN SPECIES	18	taf5l (ENSACLG00000016330)	nup133 (ENSACLG00000016342)	ENSACLG00000016473	CCSAP (ENSACLG00000016519)	cdc6 (ENSACLG00000016546)	ENSACLG00000016574	WIPF2 (ENSACLG00000016646)	ENSACLG00000016665	zgc:77929 (ENSACLG00000016671)	npepps (ENSACLG00000016681)	mrpl45 (ENSACLG00000016765)	ENSACLG00000016799	socs7 (ENSACLG00000016817)	sp2 (ENSACLG00000016868)	ENSACLG00000016925	ENSACLG00000017009 #22	mrpl4 (ENSACLG00000017038)	ENSACLG00000017092	ENSACLG00000017133	vegfc (ENSACLG00000017154)	ENSACLG00000017161	ENSACLG00000017165	ENSACLG00000017209	TENM3 (ENSACLG00000017323)	dctd (ENSACLG00000017470)	fbxo8 (ENSACLG00000017521)	hand2 (ENSACLG00000017592)	ENSACLG00000017600	ENSACLG00000017613	ENSACLG00000017678	ENSACLG00000017800
Eastern happy	MODERN SPECIES	4	fgf8a (ENSACLG00000004676)	ENSACLG00000004709	slc2a15a (ENSACLG00000004729)	nt5c2a (ENSACLG00000004818)	borcs7 (ENSACLG00000004855)	cyp17a1 (ENSACLG00000004868)	RNF166 (ENSACLG00000004886)	ctu2 (ENSACLG00000004899)	ENSACLG00000004914	ENSACLG00000004924	cdk1 (ENSACLG00000004925)	ncapd3 (ENSACLG00000004944)	ENSACLG00000005002	yipf4 (ENSACLG00000005010)	exo1 (ENSACLG00000005020)	ENSACLG00000005035 #22	ENSACLG00000005072	PDZD8 (ENSACLG00000005404)	slc18a2 (ENSACLG00000005409)	kcnk18 (ENSACLG00000005460)	vax1 (ENSACLG00000005465)	atp6v1ba (ENSACLG00000005481)	shtn1 (ENSACLG00000005896)	eno4 (ENSACLG00000005900)	hspa12a (ENSACLG00000005915)	ENSACLG00000005964	pitx3 (ENSACLG00000005981)	GBF1 (ENSACLG00000006017)	macroh2a2 (ENSACLG00000006212)	ENSACLG00000006417	CALHM3 (ENSACLG00000006418)
Eastern happy	MODERN SPECIES	10	ENSACLG00000012325	foxi2 (ENSACLG00000012312)	ENSACLG00000012299	fgfr3 (ENSACLG00000012190)	letm1 (ENSACLG00000012126)	nsd2 (ENSACLG00000012052)	ENSACLG00000012040	asmt2 (ENSACLG00000012031)	pgrmc2 (ENSACLG00000012016)	ENSACLG00000011948	ENSACLG00000011929	ahsa1b (ENSACLG00000011869)	cdca4 (ENSACLG00000011837)	si:dkey-177p2.6 (ENSACLG00000011833)	ENSACLG00000011815	ENSACLG00000011799 #22	ENSACLG00000011639	ENSACLG00000011602	ENSACLG00000011579	exoc3l4 (ENSACLG00000011561)	ENSACLG00000011547	ENSACLG00000011544	ENSACLG00000011438	ENSACLG00000011198	vps29 (ENSACLG00000011186)	eif5 (ENSACLG00000011164)	mark3a (ENSACLG00000010884)	ckba (ENSACLG00000010809)	trmt61a (ENSACLG00000010779)	bag5 (ENSACLG00000010740)	coa8 (ENSACLG00000010731)
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1109	nup133 (ENSMZEG00005005378)	ENSMZEG00005005426	CCSAP (ENSMZEG00005005439)	cdc6 (ENSMZEG00005005448)	ENSMZEG00005005463	WIPF2 (ENSMZEG00005005474)	ENSMZEG00005005496	zgc:77929 (ENSMZEG00005005509)	npepps (ENSMZEG00005005520)	mrpl45 (ENSMZEG00005005556)	ENSMZEG00005005586	socs7 (ENSMZEG00005005686)	sp2 (ENSMZEG00005005694)	ENSMZEG00005005711	ENSMZEG00005005733 #22	ENSMZEG00005005753 #22	mrpl4 (ENSMZEG00005005809)	ENSMZEG00005005830	ENSMZEG00005005836	vegfc (ENSMZEG00005005849)	ENSMZEG00005005898	ENSMZEG00005005910	ENSMZEG00005005925	ENSMZEG00005005950	ENSMZEG00005005967	RAC2 (ENSMZEG00005005981)	ENSMZEG00005005992	ENSMZEG00005006001	ENSMZEG00005006017	CUTA (ENSMZEG00005006039)	CACNG2 (ENSMZEG00005006049)
Zebra mbuna	MODERN SPECIES	1109	taf5l (ENSMZEG00005005370)	nup133 (ENSMZEG00005005378)	ENSMZEG00005005426	CCSAP (ENSMZEG00005005439)	cdc6 (ENSMZEG00005005448)	ENSMZEG00005005463	WIPF2 (ENSMZEG00005005474)	ENSMZEG00005005496	zgc:77929 (ENSMZEG00005005509)	npepps (ENSMZEG00005005520)	mrpl45 (ENSMZEG00005005556)	ENSMZEG00005005586	socs7 (ENSMZEG00005005686)	sp2 (ENSMZEG00005005694)	ENSMZEG00005005711	ENSMZEG00005005733 #22	ENSMZEG00005005753 #22	mrpl4 (ENSMZEG00005005809)	ENSMZEG00005005830	ENSMZEG00005005836	vegfc (ENSMZEG00005005849)	ENSMZEG00005005898	ENSMZEG00005005910	ENSMZEG00005005925	ENSMZEG00005005950	ENSMZEG00005005967	RAC2 (ENSMZEG00005005981)	ENSMZEG00005005992	ENSMZEG00005006001	ENSMZEG00005006017	CUTA (ENSMZEG00005006039)
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	735																ENSMZEG00005028147 #22	ENSMZEG00005028146
Zebra mbuna	MODERN SPECIES	1095	ENSMZEG00005004449	rps27a (ENSMZEG00005004484)	bmpr1aa (ENSMZEG00005004519)	ldb3a (ENSMZEG00005004579)	OPN4 (ENSMZEG00005004638)	ENSMZEG00005004678	cyp17a1 (ENSMZEG00005004704)	RNF166 (ENSMZEG00005004750)	ctu2 (ENSMZEG00005004780)	cdk1 (ENSMZEG00005004857)	ncapd3 (ENSMZEG00005004883)	ENSMZEG00005004904	ENSMZEG00005004923	yipf4 (ENSMZEG00005004927)	exo1 (ENSMZEG00005004947)	ENSMZEG00005005007 #22	ENSMZEG00005005117	PDZD8 (ENSMZEG00005005129)	slc18a2 (ENSMZEG00005005147)	kcnk18 (ENSMZEG00005005191)	ENSMZEG00005005227	vax1 (ENSMZEG00005005238)	atp6v1ba (ENSMZEG00005005256)	ENSMZEG00005005291	shtn1 (ENSMZEG00005005310)	eno4 (ENSMZEG00005005363)	ARFGEF3 (ENSMZEG00005005973)	HTR7 (ENSMZEG00005027241)	ENSMZEG00005027243	ENSMZEG00005027245	ENSMZEG00005027247
Zebra mbuna	MODERN SPECIES	1102	ran (ENSMZEG00005003327)	stx3b (ENSMZEG00005003335)	KDM2A (ENSMZEG00005003367)	ANKRD13D (ENSMZEG00005003470)	ENSMZEG00005003481	ENSMZEG00005003490	ENSMZEG00005003496	ENSMZEG00005003506	CHRNA6 (ENSMZEG00005003523)	chrnb3b (ENSMZEG00005003534)	ENSMZEG00005003563	ENSMZEG00005003571	si:ch211-175m2.5 (ENSMZEG00005003605)	polr2g (ENSMZEG00005003618)	eef1g (ENSMZEG00005003633) #21	AHNAK (ENSMZEG00005003667) #22	klhl4 (ENSMZEG00005003715)	PCDH11Y (ENSMZEG00005003743)	TSC22D3 (ENSMZEG00005003795)	MID2 (ENSMZEG00005003821)	pmt (ENSMZEG00005003864)	ENSMZEG00005003925	ENSMZEG00005003952	SLC16A2 (ENSMZEG00005003971)	ENSMZEG00005003988	ENSMZEG00005004005	ENSMZEG00005004017	ENSMZEG00005004028	pola2 (ENSMZEG00005004050)	zdhhc24 (ENSMZEG00005004118)	ENSMZEG00005004142
Zebra mbuna	MODERN SPECIES	1101	ENSMZEG00005002891	foxi2 (ENSMZEG00005002881)	ENSMZEG00005002873	fgfr3 (ENSMZEG00005002787)	letm1 (ENSMZEG00005002737)	nsd2 (ENSMZEG00005002708)	ENSMZEG00005002696	asmt2 (ENSMZEG00005002616)	pgrmc2 (ENSMZEG00005002598)	ENSMZEG00005002545	ENSMZEG00005002527	ahsa1b (ENSMZEG00005002495)	cdca4 (ENSMZEG00005002473)	si:dkey-177p2.6 (ENSMZEG00005002460)	ENSMZEG00005002450	ENSMZEG00005002435 #22	ENSMZEG00005002412	ENSMZEG00005002389	ENSMZEG00005002356	ENSMZEG00005002328	exoc3l4 (ENSMZEG00005002293)	ENSMZEG00005002245	ENSMZEG00005002188	ENSMZEG00005002169	ENSMZEG00005002154	vps29 (ENSMZEG00005002143)	eif5 (ENSMZEG00005002102)	mark3a (ENSMZEG00005001972)	ckba (ENSMZEG00005001937)	trmt61a (ENSMZEG00005001914)	bag5 (ENSMZEG00005001887)
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	415	taf5l (ENSACIG00000012293)	nup133 (ENSACIG00000012243)	ACTA1 (ENSACIG00000012219)	CCSAP (ENSACIG00000012200)	cdc6 (ENSACIG00000012154)	ENSACIG00000012130	WIPF2 (ENSACIG00000012113)	zgc:77929 (ENSACIG00000012106)	MRPL21 (ENSACIG00000012089)	npepps (ENSACIG00000012041)	mrpl45 (ENSACIG00000011923)	ENSACIG00000011879	socs7 (ENSACIG00000011768)	sp2 (ENSACIG00000011751)	ENSACIG00000011672	ENSACIG00000011622 #22	mrpl4 (ENSACIG00000011523)	ENSACIG00000011487	ENSACIG00000011472	ptp4a1 (ENSACIG00000011462)	lgsn (ENSACIG00000011442)	ENSACIG00000011420	myom2a (ENSACIG00000011162)	hk1 (ENSACIG00000011107)	ZBTB45 (ENSACIG00000011093)	dla (ENSACIG00000011078)	ENSACIG00000011058	ENSACIG00000011040	ENSACIG00000011023
Midas cichlid	MODERN SPECIES	584											ENSACIG00000024285	ttc27 (ENSACIG00000024280)	BIRC6 (ENSACIG00000024276)	yipf4 (ENSACIG00000024275)	exo1 (ENSACIG00000024273)	ENSACIG00000024270 #22	ENSACIG00000024268	PDZD8 (ENSACIG00000024267)	slc18a2 (ENSACIG00000024265)	kcnk18 (ENSACIG00000024263)	vax1 (ENSACIG00000024262)	atp6v1ba (ENSACIG00000024260)	shtn1 (ENSACIG00000024258)	eno4 (ENSACIG00000024255)
Midas cichlid	MODERN SPECIES	130	STX3 (ENSACIG00000006739)	KDM2A (ENSACIG00000006916)	ANKRD13D (ENSACIG00000006981)	ENSACIG00000007025	ENSACIG00000007037	ENSACIG00000007109	ENSACIG00000007134	CHRNA6 (ENSACIG00000007157)	chrnb3b (ENSACIG00000007186)	ENSACIG00000007209	ENSACIG00000007217	si:ch211-175m2.5 (ENSACIG00000007238)	polr2g (ENSACIG00000007252)	eef1g (ENSACIG00000007271) #21	ENSACIG00000007301	ENSACIG00000007316 #22
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	106	vps54 (ENSHCOG00000021036)	taf5l (ENSHCOG00000021046)	capn9 (ENSHCOG00000021059)	ENSHCOG00000021081	ltv1 (ENSHCOG00000001882)	ENSHCOG00000000059	cdc6 (ENSHCOG00000001908)	zgc:77929 (ENSHCOG00000001924)	ENSHCOG00000001927	npepps (ENSHCOG00000001944)	mrpl45 (ENSHCOG00000001966)	ENSHCOG00000000062	socs7 (ENSHCOG00000001990)	sp2 (ENSHCOG00000002002)	ENSHCOG00000002009	ENSHCOG00000002014 #22	mrpl4 (ENSHCOG00000002016)	ENSHCOG00000002027
Tiger tail seahorse	MODERN SPECIES	332	ANKRD13D (ENSHCOG00000009723)	ENSHCOG00000009686	RNF38 (ENSHCOG00000009663)	ENSHCOG00000009611	ENSHCOG00000009601	CHRNA6 (ENSHCOG00000009590)	chrnb3b (ENSHCOG00000009560)	ENSHCOG00000009546	ENSHCOG00000009531	si:ch211-175m2.5 (ENSHCOG00000009509)	polr2g (ENSHCOG00000009499)	eef1g (ENSHCOG00000009488) #21	ENSHCOG00000009458	ENSHCOG00000009434 #22	ENSHCOG00000009392	ENSHCOG00000009380 #22	klhl4 (ENSHCOG00000009368)	KLHL4 (ENSHCOG00000009355)	PCDH11Y (ENSHCOG00000009301)	TSC22D3 (ENSHCOG00000009278)	ENSHCOG00000009264	MID2 (ENSHCOG00000009252)	pmt (ENSHCOG00000009180)	ENSHCOG00000009113	SLC16A2 (ENSHCOG00000009101)	ENSHCOG00000009090	ENSHCOG00000009081	ENSHCOG00000009076	pola2 (ENSHCOG00000009053)	zdhhc24 (ENSHCOG00000009041)	ENSHCOG00000009021
Tiger tail seahorse	MODERN SPECIES	312	ENSHCOG00000007576	CCDC85A (ENSHCOG00000007631)	ENSHCOG00000007647	SLC24A3 (ENSHCOG00000007669)	RIN2 (ENSHCOG00000007704)	FAM98A (ENSHCOG00000000259)	tmem97 (ENSHCOG00000007718)	cdh1 (ENSHCOG00000007728)	rasgrp3 (ENSHCOG00000007748)	LTBP1 (ENSHCOG00000007788)	ttc27 (ENSHCOG00000007935)	ENSHCOG00000007958	BIRC6 (ENSHCOG00000008064)	yipf4 (ENSHCOG00000008111)	exo1 (ENSHCOG00000008153)	ENSHCOG00000008164 #22	ENSHCOG00000008171	PDZD8 (ENSHCOG00000008187)	slc18a2 (ENSHCOG00000008216)	ENSHCOG00000008255	ENSHCOG00000008280	ENSHCOG00000008308	vax1 (ENSHCOG00000008321)	atp6v1ba (ENSHCOG00000000843)	shtn1 (ENSHCOG00000008357)	eno4 (ENSHCOG00000008409)	hspa12a (ENSHCOG00000008434)	ENSHCOG00000008441	PNLIPRP2 (ENSHCOG00000008453)	pitx3 (ENSHCOG00000008464)	GBF1 (ENSHCOG00000008538)
Tiger tail seahorse	MODERN SPECIES	332	stx3b (ENSHCOG00000009749)	KDM2A (ENSHCOG00000009733)	ANKRD13D (ENSHCOG00000009723)	ENSHCOG00000009686	RNF38 (ENSHCOG00000009663)	ENSHCOG00000009611	ENSHCOG00000009601	CHRNA6 (ENSHCOG00000009590)	chrnb3b (ENSHCOG00000009560)	ENSHCOG00000009546	ENSHCOG00000009531	si:ch211-175m2.5 (ENSHCOG00000009509)	polr2g (ENSHCOG00000009499)	eef1g (ENSHCOG00000009488) #21	ENSHCOG00000009458	ENSHCOG00000009434 #22	ENSHCOG00000009392	ENSHCOG00000009380 #22	klhl4 (ENSHCOG00000009368)	KLHL4 (ENSHCOG00000009355)	PCDH11Y (ENSHCOG00000009301)	TSC22D3 (ENSHCOG00000009278)	ENSHCOG00000009264	MID2 (ENSHCOG00000009252)	pmt (ENSHCOG00000009180)	ENSHCOG00000009113	SLC16A2 (ENSHCOG00000009101)	ENSHCOG00000009090	ENSHCOG00000009081	ENSHCOG00000009076	pola2 (ENSHCOG00000009053)
Osteoglossiformes	ANCESTRAL SPECIES	52	ENSGT00940000153899.a.a	ENSGT00940000153322.B.d.a.u	ENSGT00940000153322.B.d.a.v	ENSGT00390000017284.b	ENSGT00940000162170	ENSGT00940000158869	ENSGT00940000164810	ENSGT00530000063860.a	ENSGT00940000155437	ENSGT00940000157743	ENSGT00940000153986.b.b	ENSGT00950000183059.a	ENSGT00390000008975	ENSGT00390000007552 #21	ENSGT00940000165073.a.a	ENSGT00940000154902 #22	ENSGT00940000159818	ENSGT00940000164578.a.b	ENSGT01040000240444.A.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01030000234590.B.a.a.e.b	ENSGT00390000016193	ENSGT00940000153916.A.a.c	ENSGT00940000165992.a.a	ENSGT00940000153783.b.a.a.a	ENSGT00940000156309.B.f	ENSGT00940000166308	ENSGT00940000165351	ENSGT00530000063882.b.qb	ENSGT00390000009210	ENSGT01040000240503.B.c
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	4	ENSSFOG00015025339	tmem216 (ENSSFOG00015001846)	ENSSFOG00015001824	ENSSFOG00015027205	ENSSFOG00015026121	NEUROG1 (ENSSFOG00015001781)	ARAP3 (ENSSFOG00015001516)	ENSSFOG00015031999	tgfbi (ENSSFOG00015001411)	smad5 (ENSSFOG00015001384)	syvn1 (ENSSFOG00015001279)	gpr137 (ENSSFOG00015001265)	ENSSFOG00015001255	polr2g (ENSSFOG00015001245)	eef1g (ENSSFOG00015001181) #21	AHNAK (ENSSFOG00015032209) #22	klhl4 (ENSSFOG00015001096)	her8a (ENSSFOG00015030680)	ENSSFOG00015024675	ENSSFOG00015029635	tm4sf21b (ENSSFOG00015001044)	MBLAC1 (ENSSFOG00015031251)	MPDU1 (ENSSFOG00015001010)	ENSSFOG00015025772	eif4a1a (ENSSFOG00015000931)	senp3a (ENSSFOG00015000884)	tnk1 (ENSSFOG00015000813)	plscr3b (ENSSFOG00015000798)	ENSSFOG00015000794	elp5 (ENSSFOG00015000787)	CTDNEP1 (ENSSFOG00015000749)
Asian bonytongue	MODERN SPECIES	6	ASB2 (ENSSFOG00015024536)	PRIMA1 (ENSSFOG00015027684)	UNC79 (ENSSFOG00015014952)	btbd7 (ENSSFOG00015014933)	UBR7 (ENSSFOG00015014916)	LYSET (ENSSFOG00015014909)	itpk1a (ENSSFOG00015014879)	ENSSFOG00015014858	sel1l (ENSSFOG00015014759)	ENSSFOG00015014738	ahsa1b (ENSSFOG00015025826)	vipas39 (ENSSFOG00015014621)	gpr132b (ENSSFOG00015014606)	cdca4 (ENSSFOG00015014598)	ENSSFOG00015026321	ENSSFOG00015014569 #22	ENSSFOG00015014557	cdc42bpb (ENSSFOG00015014302)	ENSSFOG00015014250	ENSSFOG00015014234	ENSSFOG00015014222	ENSSFOG00015014202	eif5 (ENSSFOG00015014173)	mark3b (ENSSFOG00015014033)	ENSSFOG00015024793	ENSSFOG00015028031	CKB (ENSSFOG00015012559)	trmt61a (ENSSFOG00015032190)	bag5 (ENSSFOG00015032065)	coa8 (ENSSFOG00015013934)	klc1a (ENSSFOG00015013834)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	119			ENSPKIG00000008456	ENSPKIG00000008504	SYNPO2L (ENSPKIG00000008647)	myoz1a (ENSPKIG00000008662)	USP54 (ENSPKIG00000008718)	ldb3a (ENSPKIG00000008914)	bmpr1aa (ENSPKIG00000009058)	ENSPKIG00000009121	LTBP1 (ENSPKIG00000009148)	ttc27 (ENSPKIG00000009196)	BIRC6 (ENSPKIG00000009293)	yipf4 (ENSPKIG00000009413)	exo1 (ENSPKIG00000009478)	ENSPKIG00000009580 #22	ENSPKIG00000009594	PDZD8 (ENSPKIG00000009620)	slc18a2 (ENSPKIG00000009658)	kcnk18 (ENSPKIG00000009711)	ENSPKIG00000009740	vax1 (ENSPKIG00000009767)	atp6v1ba (ENSPKIG00000009808)	shtn1 (ENSPKIG00000009916)	eno4 (ENSPKIG00000009937)	hspa12a (ENSPKIG00000009974)	PNLIPRP2 (ENSPKIG00000010033)	ENSPKIG00000010075	pitx3 (ENSPKIG00000010100)	GBF1 (ENSPKIG00000010267)	macroh2a2 (ENSPKIG00000010711)
P. kingsleyae	MODERN SPECIES	56	tmem216 (ENSPKIG00000000272)	ENSPKIG00000000293	ENSPKIG00000000333	ENSPKIG00000000367	NEUROG1 (ENSPKIG00000000377)	ARAP3 (ENSPKIG00000000421)	ENSPKIG00000000534	tgfbi (ENSPKIG00000000568)	smad5 (ENSPKIG00000000713)	syvn1 (ENSPKIG00000000759)	gpr137 (ENSPKIG00000000816)	ENSPKIG00000000849	polr2g (ENSPKIG00000000902)	eef1g (ENSPKIG00000000945) #21	ENSPKIG00000000970	ENSPKIG00000000988 #22	klhl4 (ENSPKIG00000001029)	her8a (ENSPKIG00000001067)	ENSPKIG00000001079	ENSPKIG00000001090	tm4sf21b (ENSPKIG00000001100)	MBLAC1 (ENSPKIG00000001117)	MPDU1 (ENSPKIG00000001131)	sox19b (ENSPKIG00000001144)	eif4a1a (ENSPKIG00000001167)	senp3a (ENSPKIG00000001302)	tnk1 (ENSPKIG00000001359)	plscr3b (ENSPKIG00000001457)	phf23b (ENSPKIG00000001497)	elp5 (ENSPKIG00000001537)	ENSPKIG00000001606
P. kingsleyae	MODERN SPECIES	68	ENSPKIG00000005392	btbd7 (ENSPKIG00000005419)	UBR7 (ENSPKIG00000005459)	LYSET (ENSPKIG00000005493)	itpk1a (ENSPKIG00000005508)	ENSPKIG00000005535	ENSPKIG00000005613	sel1l (ENSPKIG00000005662)	ENSPKIG00000005721	ahsa1b (ENSPKIG00000005752)	vipas39 (ENSPKIG00000005842)	gpr132b (ENSPKIG00000005968)	cdca4 (ENSPKIG00000005978)	ENSPKIG00000005984	ENSPKIG00000005993	ENSPKIG00000006000 #22
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES		ccdc77 (ENSECRG00000010067)	hdhd5 (ENSECRG00000010083)	RAB19 (ENSECRG00000010093)	ENSECRG00000010106	kdm7ab (ENSECRG00000010121)	cskmt (ENSECRG00000010141) #12	otub1a (ENSECRG00000010147)	ENSECRG00000010156	slc22a6l (ENSECRG00000010165)	capn1 (ENSECRG00000010180)	syvn1 (ENSECRG00000010204)	GPR137 (ENSECRG00000010214)	ENSECRG00000010229	polr2g (ENSECRG00000010250)	eef1g (ENSECRG00000010267) #21	AHNAK (ENSECRG00000010283) #22	macrod1 (ENSECRG00000010304)	FLRT1 (ENSECRG00000010329)	stip1 (ENSECRG00000010371)	fermt3b (ENSECRG00000010376)	trpt1 (ENSECRG00000010387)	ENSECRG00000010392	ENSECRG00000010397	ENSECRG00000010403	nxf1a (ENSECRG00000010413)	LRRN4CL (ENSECRG00000010434)	bscl2l (ENSECRG00000010443) #8	gng3 (ENSECRG00000010461) #9	adssl (ENSECRG00000010468)	HNRNPUL2 (ENSECRG00000010478) #7	zgc:153018 (ENSECRG00000010485)
Reedfish	MODERN SPECIES	7	lgmn (ENSECRG00000015267)	RIN3 (ENSECRG00000015220)	slc24a4a (ENSECRG00000015163)	cpsf2 (ENSECRG00000014934)	NDUFB1 (ENSECRG00000014887)	DDX24 (ENSECRG00000014844)	ENSECRG00000022019	sel1l (ENSECRG00000022002)	ENSECRG00000021979	ahsa1a (ENSECRG00000021962)	vipas39 (ENSECRG00000021918)	gpr132b (ENSECRG00000021905)	cdca4 (ENSECRG00000021893)	si:dkey-177p2.6 (ENSECRG00000021829)	ENSECRG00000021796	ENSECRG00000021777 #22	pigh (ENSECRG00000021757)	rhov (ENSECRG00000021746)	vps18 (ENSECRG00000021723)	ino80 (ENSECRG00000021589)	chac1 (ENSECRG00000021530)	DLL4 (ENSECRG00000021518)	ENSECRG00000021494	ENSECRG00000021477	RASGRP1 (ENSECRG00000021450)	FAM98B (ENSECRG00000021432)	spred1 (ENSECRG00000021418)	MDGA2 (ENSECRG00000021380)	ENSECRG00000021357	lrr1 (ENSECRG00000021338)	mgat2 (ENSECRG00000021332)
Reedfish	MODERN SPECIES	6	yipf3 (ENSECRG00000015119)	polr1c (ENSECRG00000015427)	fbxo28 (ENSECRG00000015463)	degs1 (ENSECRG00000015517)	nvl (ENSECRG00000015733)	ENSECRG00000015791	FAM98A (ENSECRG00000015851)	rasgrp3 (ENSECRG00000015885)	LTBP1 (ENSECRG00000016077)	ENSECRG00000016583	BIRC6 (ENSECRG00000016833)	ENSECRG00000017334	COX6A1 (ENSECRG00000017354)	yipf4 (ENSECRG00000017405)	exo1 (ENSECRG00000017500)	ENSECRG00000017549 #22	ENSECRG00000017592	ENSECRG00000017631	mrpl4 (ENSECRG00000017669)	ARG1 (ENSECRG00000017727)	heatr1 (ENSECRG00000017886)	ENSECRG00000018044	ENSECRG00000018200	lmbrd1 (ENSECRG00000018259)	ADGRB3 (ENSECRG00000018341)	ENSECRG00000018420	ENSECRG00000018436	ENSECRG00000018476	ENSECRG00000018525	PHF3 (ENSECRG00000018544)	ptp4a1 (ENSECRG00000018581)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1234																ENSCMIG00000001626 #22
Elephant shark	MODERN SPECIES	1547	ENSCMIG00000019385	ENSCMIG00000019390	sult6b1 (ENSCMIG00000019395)	sult6b1 (ENSCMIG00000019403)	FEZ2 (ENSCMIG00000019409)	ENSCMIG00000019420	crim1 (ENSCMIG00000019436)	ENSCMIG00000019443	FAM98A (ENSCMIG00000019444)	rasgrp3 (ENSCMIG00000019473)	LTBP1 (ENSCMIG00000019517)	ttc27 (ENSCMIG00000019536)	BIRC6 (ENSCMIG00000019584)	yipf4 (ENSCMIG00000019611)	EXO1 (ENSCMIG00000019616)	ENSCMIG00000019621 #22	ENSCMIG00000019623	ENSCMIG00000019625	mrpl4 (ENSCMIG00000019626)	ENSCMIG00000019627	ENSCMIG00000019629	SLC30A6 (ENSCMIG00000019633)	CEBPZOS (ENSCMIG00000019651)	cebpz (ENSCMIG00000019653)	ndufaf7 (ENSCMIG00000019655)	ENSCMIG00000019656	PRKD3 (ENSCMIG00000019663)	mocs3 (ENSCMIG00000019688)	QPCT (ENSCMIG00000019695)	ENSCMIG00000019697	ENSCMIG00000019699
Elephant shark	MODERN SPECIES	2528																ENSCMIG00000001496 #22	ENSCMIG00000001511 #22
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	2528															ENSCMIG00000001496 #22	ENSCMIG00000001511 #22
Elephant shark	MODERN SPECIES	3298																ENSCMIG00000005691 #22
Elephant shark	MODERN SPECIES	1494	ENSCMIG00000012034	NIN (ENSCMIG00000012066)	sav1 (ENSCMIG00000012104)	atl1 (ENSCMIG00000012129)	MAP4K5 (ENSCMIG00000012533)	cdkl1 (ENSCMIG00000013024)	dmac2l (ENSCMIG00000013027)	l2hgdh (ENSCMIG00000013029)	sos2 (ENSCMIG00000013057)	vcpkmt (ENSCMIG00000013127)	arf6b (ENSCMIG00000013129)	cdca4 (ENSCMIG00000013135)	si:dkey-177p2.6 (ENSCMIG00000013138)	ENSCMIG00000013142	ENSCMIG00000013151	ENSCMIG00000013164 #22	PLD4 (ENSCMIG00000013176)	ENSCMIG00000013203	ENSCMIG00000013205	ENSCMIG00000013207	AKT1 (ENSCMIG00000013261)	ENSCMIG00000013316	adss1 (ENSCMIG00000013378)	INF2 (ENSCMIG00000013513)	ENSCMIG00000013515	ENSCMIG00000013518	ENSCMIG00000013523	tmem179aa (ENSCMIG00000013526)	KIF26A (ENSCMIG00000013532)	ENSCMIG00000013537	tdrd9 (ENSCMIG00000013578)
Cyclostomata	ANCESTRAL SPECIES	245																ENSGT00940000154902 #22	ENSGT00950000183059.b.a	ENSGT00940000155103.a.b
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	1082															matn4 (ENSPMAG00000009795)	ENSPMAG00000009796 #22	ENSPMAG00000009797
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	5625																ENSPMAG00000001868 #22
Lamprey	MODERN SPECIES	2844																ENSPMAG00000004465 #22
Lamprey	MODERN SPECIES	119																ENSPMAG00000001734 #22	ENSPMAG00000001737
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	195	ENSEBUG00000003364	ENSEBUG00000013871	brf1b (ENSEBUG00000009997)	ENSEBUG00000013651	ENSEBUG00000005721	ENSEBUG00000011642	arl2 (ENSEBUG00000014954)	ENSEBUG00000011876	ENSEBUG00000008661	ENSEBUG00000004224	ENSEBUG00000008734	ENSEBUG00000005229	tmem121ab (ENSEBUG00000002407)	si:dkey-202l22.3 (ENSEBUG00000015018)	ENSEBUG00000010072	ENSEBUG00000005796 #22	ENSEBUG00000008881	ENSEBUG00000016785	ENSEBUG00000011631	aqr (ENSEBUG00000015201)	galnt2 (ENSEBUG00000012579)	ENSEBUG00000012163	ENSEBUG00000000975	ENSEBUG00000007768	ENSEBUG00000012376	ENSEBUG00000004860
Hagfish	MODERN SPECIES	1519												ENSEBUG00000008342	ENSEBUG00000007044	ENSEBUG00000011402	ENSEBUG00000010276	ENSEBUG00000013693 #22	ENSEBUG00000016409	ENSEBUG00000002996	cplx3a (ENSEBUG00000013563)	ENSEBUG00000002085	ENSEBUG00000015970	ENSEBUG00000005044	ckmt2b (ENSEBUG00000005528)	ENSEBUG00000013314