Mus_A	ANCESTRAL SPECIES	16	ENSGT01100000263497.B #7	ENSGT00390000011639 #8	ENSGT00940000162696 #9	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b #23	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u #25	ENSGT00730000111073 #26	ENSGT00950000182841.b.a.a.b.a.a.b.a #27	ENSGT00940000158650 #28	ENSGT00940000159102 #29	ENSGT00950000182990.a.a.a.b.u.b #30	ENSGT00950000182990.a.a.a.b.u.a #31	ENSGT00950000182990.a.a.b.b #32	ENSGT00940000155807.a #33	ENSGT00390000010089.f #34	ENSGT00530000063626.a #35	ENSGT00940000161192 #36
Mus_B	ANCESTRAL SPECIES	16	ENSGT01100000263497.B #7	ENSGT00390000011639 #8	ENSGT00940000162696 #9	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b #23	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a #25	ENSGT00730000111073 #26	ENSGT00950000182841.b.a.a.b.a.a.b.a #27	ENSGT00940000158650 #28	ENSGT00940000159102 #29	ENSGT00950000182990.a.a.a.b.u.b #30	ENSGT00950000182990.a.a.a.b.u.a #31	ENSGT00950000182990.a.a.b.b #32	ENSGT00940000155807.a #33	ENSGT00390000010089.f #34	ENSGT00530000063626.a #35	ENSGT00940000161192 #36
Mus_C	ANCESTRAL SPECIES	25	ENSGT01100000263497.B #7	ENSGT00390000011639 #8	ENSGT00940000162696 #9	ENSGT00940000156457 #10	ENSGT00390000001930 #11	ENSGT00400000022873 #12	ENSGT00390000002615 #13	ENSGT00390000008374 #14	ENSGT00940000159139 #15	ENSGT00940000156954 #16	ENSGT00940000159921 #17	ENSGT00940000159589 #18	ENSGT01030000234573.B.c.b.b #19	ENSGT00940000159914 #20	ENSGT00390000007552.f #21	ENSGT00940000154902.bb.b #22	ENSGT00940000154902.bb.a ##22	ENSGT00940000155073.b #23	ENSGT00950000183045.A.a.a #24	ENSGT00390000013802.u.a #25	ENSGT00730000111073 #26	ENSGT00950000182841.b.a.a.b.a.a.b.a #27	ENSGT00940000158650 #28	ENSGT00940000159102 #29	ENSGT00950000182990.a.a.a.b.u.b #30	ENSGT00950000182990.a.a.a.b.u.a #31	ENSGT00950000182990.a.a.b.b #32	ENSGT00940000155807.a #33	ENSGT00390000010089.f #34	ENSGT00530000063626.a #35	ENSGT00940000161192 #36
spretus	MODERN SPECIES	10	Gng3 (MGP_SPRETEiJ_G0023570) #7	Bscl2 (MGP_SPRETEiJ_G0023571) #8	Lrrn4cl (MGP_SPRETEiJ_G0023572) #9	Ubxn1 (MGP_SPRETEiJ_G0023573) #10	Uqcc3 (MGP_SPRETEiJ_G0023574) #11	MGP_SPRETEiJ_G0023575 #12	1810009A15Rik (MGP_SPRETEiJ_G0023576) #13	Ints5 (MGP_SPRETEiJ_G0023577) #14	Ganab (MGP_SPRETEiJ_G0023578) #15	B3gat3 (MGP_SPRETEiJ_G0023579) #16	Rom1 (MGP_SPRETEiJ_G0023580) #17	Eml3 (MGP_SPRETEiJ_G0023581) #18	Mta2 (MGP_SPRETEiJ_G0023582) #19	Tut1 (MGP_SPRETEiJ_G0023583) #20	Eef1g (MGP_SPRETEiJ_G0023584) #21	Ahnak (MGP_SPRETEiJ_G0023585) #22	Scgb1a1 (MGP_SPRETEiJ_G0023586) #23	Asrgl1 (MGP_SPRETEiJ_G0023587) #24	Scgb2a2 (MGP_SPRETEiJ_G0023588) #25	Incenp (MGP_SPRETEiJ_G0023589) #26	Fth1 (MGP_SPRETEiJ_G0023590) #27	Best1 (MGP_SPRETEiJ_G0023591) #28	Rab3il1 (MGP_SPRETEiJ_G0023592) #29	Fads3 (MGP_SPRETEiJ_G0023593) #30	Fads2 (MGP_SPRETEiJ_G0023594) #31	Fads1 (MGP_SPRETEiJ_G0023595) #32	Fen1 (MGP_SPRETEiJ_G0023596) #33	Tmem258 (MGP_SPRETEiJ_G0023597) #34	Myrf (MGP_SPRETEiJ_G0023598) #35	Dagla (MGP_SPRETEiJ_G0023599) #36	Syt7 (MGP_SPRETEiJ_G0023600) #37
Steppe mouse	MODERN SPECIES	2399					Uqcc3 (ENSMSIG00000030087) #11	ENSMSIG00000030086 #12	1810009A15Rik (ENSMSIG00000030082) #13	Ints5 (ENSMSIG00000030081) #14	Ganab (ENSMSIG00000030073) #15	B3gat3 (ENSMSIG00000030069) #16	Rom1 (ENSMSIG00000030067) #17	Eml3 (ENSMSIG00000030059) #18	Mta2 (ENSMSIG00000030052) #19	Tut1 (ENSMSIG00000030047) #20	ENSMSIG00000030044 #21	ENSMSIG00000030038 #22	ENSMSIG00000030024 ##22	Scgb1a1 (ENSMSIG00000030022) #23	Asrgl1 (ENSMSIG00000030021) #24
Mouse	MODERN SPECIES	10	Bscl2 (ENSMUSG00000071657) #8	Lrrn4cl (ENSMUSG00000071656) #9	Ubxn1 (ENSMUSG00000071655) #10	Uqcc3 (ENSMUSG00000071654) #11	Lbhd1 (ENSMUSG00000096740)	1810009A15Rik (ENSMUSG00000071653) #13	Gm49416 (ENSMUSG00000116347)	Ints5 (ENSMUSG00000071652) #14	Ganab (ENSMUSG00000071650) #15	B3gat3 (ENSMUSG00000071649) #16	Rom1 (ENSMUSG00000071648) #17	Eml3 (ENSMUSG00000071647) #18	Mta2 (ENSMUSG00000071646) #19	Tut1 (ENSMUSG00000071645) #20	Eef1g (ENSMUSG00000071644) #21	Ahnak (ENSMUSG00000069833) #22	Scgb1a1 (ENSMUSG00000024653) #23	Asrgl1 (ENSMUSG00000024654) #24	Scgb2a2 (ENSMUSG00000096872) #25	Incenp (ENSMUSG00000024660) #26	Fth1 (ENSMUSG00000024661) #27	Best1 (ENSMUSG00000037418) #28	Rab3il1 (ENSMUSG00000024663) #29	Fads3 (ENSMUSG00000024664) #30	Fads2 (ENSMUSG00000024665) #31	Fads1 (ENSMUSG00000010663) #32	Fen1 (ENSMUSG00000024742) #33	Tmem258 (ENSMUSG00000036372) #34	Myrf (ENSMUSG00000036098) #35	Dagla (ENSMUSG00000035735) #36	Syt7 (ENSMUSG00000024743) #37