Sauria ANCESTRAL SPECIES 65 ENSGT00390000002615 ENSGT00510000049875 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Archelosauria ANCESTRAL SPECIES 72 ENSGT01010000222658 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Archosauria ANCESTRAL SPECIES 76 ENSGT00940000154901.C.b.f.b.a.a ENSGT00940000154901.C.b.f.b.b.a.a ENSGT00940000154901.C.b.f.b.b.a.b ENSGT00940000155070 ENSGT00940000161776 ENSGT00390000016784 ENSGT00940000159147 ENSGT00940000154524.a ENSGT00940000157743 ENSGT00390000017253 ENSGT00390000007479 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Aves ANCESTRAL SPECIES 70 ENSGT00940000154901.C.b.f.b.a.a ENSGT00940000154901.C.b.f.b.b.a.a ENSGT00940000154901.C.b.f.b.b.a.b ENSGT00940000155070 ENSGT00940000161776 ENSGT00390000016784 ENSGT00940000159147 ENSGT00940000154524.a ENSGT00940000157743 ENSGT00390000017253 ENSGT00390000007479 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Neognathae ANCESTRAL SPECIES 51 ENSGT00940000159589 ENSGT01030000234573.B.c.b.b ENSGT00940000159914 ENSGT00640000091486.a ENSGT00940000173994 ENSGT01060000249020 ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Neognathae_b ANCESTRAL SPECIES 39 ENSGT00980000200147 ENSGT00940000155031 ENSGT00940000154196.a ENSGT00390000014903 ENSGT00960000189643 ENSGT01000000214440.C ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT00530000064165.a ENSGT01000000215390 ENSGT00940000157074 ENSGT00950000182985.b.b Neognathae_c ANCESTRAL SPECIES 59 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT01000000215390 ENSGT00940000157074 ENSGT00960000191711 Golden eagle MODERN SPECIES 28 AHNAK (ENSACCG00020011218) #22 Kakapo MODERN SPECIES 75 ENSSHBG00005019307 ENSSHBG00005019310 ENSSHBG00005019314 DPF2 (ENSSHBG00005019320) CDC42EP2 (ENSSHBG00005019329) POLA2 (ENSSHBG00005019332) CAPN1 (ENSSHBG00005019338) SYVN1 (ENSSHBG00005019344) ENSSHBG00005019348 MRPL49 (ENSSHBG00005019350) FAU (ENSSHBG00005019353) WDR74 (ENSSHBG00005019356) INTS5 (ENSSHBG00005019375) POLR2G (ENSSHBG00005019378) EEF1G (ENSSHBG00005019380) AHNAK (ENSSHBG00005019382) #22 B4GAT1 (ENSSHBG00005019385) ENSSHBG00005019387 ENSSHBG00005019391 FKBP2 (ENSSHBG00005019395) ENSSHBG00005019397 ENSSHBG00005019401 ARL2 (ENSSHBG00005019404) ENSSHBG00005019406 Passeriformes ANCESTRAL SPECIES 43 ENSGT00940000157482 ENSGT00940000155031 ENSGT00940000154196.a ENSGT00390000014903 ENSGT00960000189643 ENSGT01000000214440.C ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT00530000064165.a ENSGT01000000215390 ENSGT00940000157074 ENSGT00950000182985.b.b Great tit MODERN SPECIES 380 ENSPMJG00000002205 #22 Passeriformes_d ANCESTRAL SPECIES 38 ENSGT00940000157482 ENSGT00940000155031 ENSGT00940000154196.a ENSGT00390000014903 ENSGT00960000189643 ENSGT01000000214440.C ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT00530000064165.a ENSGT01000000215390 ENSGT00940000157074 ENSGT00950000182985.b.b Flycatcher MODERN SPECIES 44 ENSFALG00000024217 #22 Passeriformes_g ANCESTRAL SPECIES 44 ENSGT00940000157482 ENSGT00940000155031 ENSGT00940000154196.a ENSGT00390000014903 ENSGT00960000189643 ENSGT01000000214440.C ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT00530000064165.a ENSGT01000000215390 ENSGT00940000157074 ENSGT00950000182985.b.b Medium ground finch MODERN SPECIES 617 ENSGFOG00000003657 #22 Passeroidea ANCESTRAL SPECIES 54 ENSGT00940000157482 ENSGT00940000155031 ENSGT00940000154196.a ENSGT00390000014903 ENSGT00960000189643 ENSGT01000000214440.C ENSGT00390000007539 ENSGT00390000012589 ENSGT00940000160376 ENSGT01100000263497.B ENSGT00390000011639 ENSGT00940000156457 ENSGT00390000008374 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000157679 ENSGT00530000064165.a ENSGT01000000215390 ENSGT00940000157074 ENSGT00950000182985.b.b Common canary MODERN SPECIES 436 ENSSCAG00000000550 #22 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 38 ENSTGUG00000026804 ENSTGUG00000018975 ENSTGUG00000023367 ENSTGUG00000019144 ENSTGUG00000025402 ENSTGUG00000024672 ENSTGUG00000025536 ENSTGUG00000027721 ENSTGUG00000024709 ENSTGUG00000020446 ENSTGUG00000029251 ENSTGUG00000022895 ENSTGUG00000022510 ENSTGUG00000014456 ENSTGUG00000019257 ENSTGUG00000028725 #22 ENSTGUG00000023972 ENSTGUG00000029303 ENSTGUG00000019532 ENSTGUG00000024903 ENSTGUG00000026847 ENSTGUG00000023172 ENSTGUG00000019002 ENSTGUG00000020399 ENSTGUG00000022783 ENSTGUG00000023246 ZNHIT2 (ENSTGUG00000028129) ENSTGUG00000024115 ENSTGUG00000026301 ENSTGUG00000021607 ENSTGUG00000028351 Zebra finch MODERN SPECIES 38 ENSTGUG00000023760 ENSTGUG00000029242 ENSTGUG00000027751 ENSTGUG00000020420 ENSTGUG00000026539 ENSTGUG00000025733 STX5 (ENSTGUG00000021933) ENSTGUG00000027990 ENSTGUG00000022623 ENSTGUG00000020163 ENSTGUG00000022941 ENSTGUG00000020286 UBXN1 (ENSTGUG00000029060) ENSTGUG00000025943 ENSTGUG00000022402 ENSTGUG00000026145 #22 ENSTGUG00000024726 ENSTGUG00000019935 ENSTGUG00000019544 ENSTGUG00000024122 ENSTGUG00000021122 ENSTGUG00000028351 ENSTGUG00000021607 ENSTGUG00000026301 ENSTGUG00000024115 ZNHIT2 (ENSTGUG00000028129) ENSTGUG00000023246 ENSTGUG00000022783 ENSTGUG00000020399 ENSTGUG00000019002 ENSTGUG00000023172 Galloanserae DUPLICATION Galloanserae DUPLICATION Galloanserae ANCESTRAL SPECIES ENSGT00940000154902.d.a #22 Phasianidae ANCESTRAL SPECIES ENSGT00940000154902.d.a #22 Japanese quail MODERN SPECIES 487 ENSCJPG00005002166 #22 Anatidae ANCESTRAL SPECIES ENSGT00940000154902.d.a #22 Duck MODERN SPECIES 946 ENSAPLG00000023109 #22 Galloanserae ANCESTRAL SPECIES ENSGT00940000154902.d.b #22 Anatidae ANCESTRAL SPECIES ENSGT00940000154902.d.b #22 Pink-footed goose MODERN SPECIES 667 ENSABRG00000013853 #22 ENSABRG00000013714 #22 Duck MODERN SPECIES 3801 ENSAPLG00000019169 #22 Galloanserae ANCESTRAL SPECIES 137 ENSGT00390000007552 ENSGT00940000154902.e #22 Anatidae ANCESTRAL SPECIES ENSGT00940000154902.e #22 Pink-footed goose MODERN SPECIES 667 ENSABRG00000013853 #22 ENSABRG00000013714 #22 Duck DUPLICATION Duck MODERN SPECIES 3281 ENSAPLG00000016739 #22 Duck MODERN SPECIES 2218 ENSAPLG00000020370 #22 Phasianidae ANCESTRAL SPECIES 107 ENSGT00390000007552 ENSGT00940000154902.e #22 Phasianidae_b ANCESTRAL SPECIES ENSGT00940000154902.e #22 Turkey MODERN SPECIES 1202 ENSMGAG00000022382 #22 Japanese quail MODERN SPECIES 54 CAPN1 (ENSCJPG00005002503) EEF1G (ENSCJPG00005002495) ENSCJPG00005002490 #22 ZNHIT2 (ENSCJPG00005002483) African ostrich MODERN SPECIES 18 AHNAK (ENSSCUG00000000063) #22 Australian saltwater crocodile MODERN SPECIES 64 ESR2 (ENSCPRG00005016580) MTHFD1 (ENSCPRG00005016135) AKAP5 (ENSCPRG00005016108) ZBTB25 (ENSCPRG00005016106) ZBTB1 (ENSCPRG00005016100) HSPA2 (ENSCPRG00005016094) PPP1R36 (ENSCPRG00005016089) ENSCPRG00005016087 ENSCPRG00005016085 BRF1 (ENSCPRG00005016078) NUDT14 (ENSCPRG00005016074) JAG2 (ENSCPRG00005016017) ENSCPRG00005016010 ENSCPRG00005016008 CLBA1 (ENSCPRG00005016007) ENSCPRG00005015998 #22 PLD4 (ENSCPRG00005015991) CEP170B (ENSCPRG00005015985) ENSCPRG00005015980 AKT1 (ENSCPRG00005015965) ENSCPRG00005015958 ADSS1 (ENSCPRG00005015931) INF2 (ENSCPRG00005015924) TMEM179 (ENSCPRG00005015921) KIF26A (ENSCPRG00005015914) ASPG (ENSCPRG00005015909) RD3L (ENSCPRG00005015908) TDRD9 (ENSCPRG00005015883) ENSCPRG00005015875 PPP1R13B (ENSCPRG00005015869) ZFYVE21 (ENSCPRG00005015861) Cryptodira ANCESTRAL SPECIES 61 ENSGT01010000222658 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 Chinese turtle DUPLICATION Chinese turtle MODERN SPECIES 323 TTC9C (ENSPSIG00000003786) ZBTB3 (ENSPSIG00000001786) ENSPSIG00000003872 POLR2G (ENSPSIG00000004285) EEF1G (ENSPSIG00000004341) AHNAK (ENSPSIG00000005107) #22 ENSPSIG00000005776 Chinese turtle MODERN SPECIES 1797 ENSPSIG00000000499 #22 PLD4 (ENSPSIG00000009358) CEP170B (ENSPSIG00000009304) ENSPSIG00000000487 AKT1 (ENSPSIG00000007672) SIVA1 (ENSPSIG00000007435) ADSS1 (ENSPSIG00000016960) ENSPSIG00000016620 ENSPSIG00000015949 TMEM179 (ENSPSIG00000015912) ENSPSIG00000000482 Testudinoidea DUPLICATION Testudinoidea DUPLICATION Testudinoidea ANCESTRAL SPECIES 2 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00950000183014.f.b.a.b ENSGT00530000064244.a ENSGT00940000161980 Emydidae ANCESTRAL SPECIES 9 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00940000163561 ENSGT00950000183014.f.b.a.b ENSGT00530000064244.a Three-toed box turtle MODERN SPECIES 33 UBXN1 (ENSTMTG00000012978) ENSTMTG00000012995 LRRN4CL (ENSTMTG00000013015) BSCL2 (ENSTMTG00000013029) GNG3 (ENSTMTG00000013041) ENSTMTG00000013079 HNRNPUL2 (ENSTMTG00000013466) TTC9C (ENSTMTG00000013495) ENSTMTG00000013508 ENSTMTG00000013525 ZBTB3 (ENSTMTG00000013561) ENSTMTG00000013589 POLR2G (ENSTMTG00000013614) EEF1G (ENSTMTG00000013633) ENSTMTG00000013656 #22 ENSTMTG00000013689 #22 FAM120A (ENSTMTG00000013895) PHF2 (ENSTMTG00000013921) BARX1 (ENSTMTG00000013965) PTPDC1 (ENSTMTG00000013986) ENSTMTG00000014035 WNT7A (ENSTMTG00000014061) FBLN2 (ENSTMTG00000014092) painted turtle MODERN SPECIES 884 BSCL2 (ENSCPBG00000017959) GNG3 (ENSCPBG00000017960) ENSCPBG00000017961 HNRNPUL2 (ENSCPBG00000017963) ENSCPBG00000017964 ENSCPBG00000017965 ENSCPBG00000017967 ENSCPBG00000017968 ZBTB3 (ENSCPBG00000017969) ENSCPBG00000017970 POLR2G (ENSCPBG00000017972) EEF1G (ENSCPBG00000017974) ENSCPBG00000017976 ENSCPBG00000017978 #22 ENSCPBG00000017981 #22 ENSCPBG00000017984 #22 Testudinidae ANCESTRAL SPECIES 5 ENSGT00940000156484.a ENSGT00980000201892 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00960000189495 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00950000183014.f.b.a.b ENSGT00530000064244.a Goode s thornscrub tortoise MODERN SPECIES 21 UBXN1 (ENSGEVG00005007492) ENSGEVG00005007440 ENSGEVG00005007419 BSCL2 (ENSGEVG00005007400) GNG3 (ENSGEVG00005007379) ENSGEVG00005007352 HNRNPUL2 (ENSGEVG00005007313) TTC9C (ENSGEVG00005007294) ENSGEVG00005007283 ENSGEVG00005007267 ENSGEVG00005007247 ENSGEVG00005007197 POLR2G (ENSGEVG00005007177) EEF1G (ENSGEVG00005007153) RPL36AL (ENSGEVG00005007124) AHNAK (ENSGEVG00005007107) #22 FAM120A (ENSGEVG00005006605) PHF2 (ENSGEVG00005006330) BARX1 (ENSGEVG00005006201) ENSGEVG00005006181 ENSGEVG00005006143 WNT7A (ENSGEVG00005006076) FBLN2 (ENSGEVG00005005981) ENSGEVG00005005963 HDAC11 (ENSGEVG00005005930) NUP210 (ENSGEVG00005005766) IQSEC1 (ENSGEVG00005005708) ACAD9 (ENSGEVG00005005630) ENSGEVG00005005602 ENSGEVG00005005535 GP9 (ENSGEVG00005005510) Abingdon island giant tortoise MODERN SPECIES 142 ENSCABG00000021907 ENSCABG00000021908 BSCL2 (ENSCABG00000021909) ENSCABG00000021910 GNG3 (ENSCABG00000021911) HNRNPUL2 (ENSCABG00000021912) TTC9C (ENSCABG00000021913) ENSCABG00000021914 ENSCABG00000021915 ENSCABG00000021916 ENSCABG00000021917 POLR2G (ENSCABG00000021918) EEF1G (ENSCABG00000021919) ENSCABG00000021921 ENSCABG00000021922 #22 ENSCABG00000021923 #22 FAM120A (ENSCABG00000021925) PHF2 (ENSCABG00000021927) BARX1 (ENSCABG00000021928) PTPDC1 (ENSCABG00000021929) ENSCABG00000021930 Testudinoidea ANCESTRAL SPECIES ENSGT00940000154902.j.b #22 Emydidae ANCESTRAL SPECIES ENSGT00940000154902.j.b #22 painted turtle MODERN SPECIES 884 LRRN4CL (ENSCPBG00000017956) BSCL2 (ENSCPBG00000017959) GNG3 (ENSCPBG00000017960) ENSCPBG00000017961 HNRNPUL2 (ENSCPBG00000017963) ENSCPBG00000017964 ENSCPBG00000017965 ENSCPBG00000017967 ENSCPBG00000017968 ZBTB3 (ENSCPBG00000017969) ENSCPBG00000017970 POLR2G (ENSCPBG00000017972) EEF1G (ENSCPBG00000017974) ENSCPBG00000017976 ENSCPBG00000017978 #22 ENSCPBG00000017981 #22 ENSCPBG00000017984 #22 Testudinoidea ANCESTRAL SPECIES 2 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00950000183014.f.b.a.b ENSGT00530000064244.a Testudinidae ANCESTRAL SPECIES 5 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00980000201892 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00960000189495 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00950000183014.f.b.a.b Abingdon island giant tortoise MODERN SPECIES 142 UBXN1 (ENSCABG00000021905) ENSCABG00000021907 ENSCABG00000021908 BSCL2 (ENSCABG00000021909) ENSCABG00000021910 GNG3 (ENSCABG00000021911) HNRNPUL2 (ENSCABG00000021912) TTC9C (ENSCABG00000021913) ENSCABG00000021914 ENSCABG00000021915 ENSCABG00000021916 ENSCABG00000021917 POLR2G (ENSCABG00000021918) EEF1G (ENSCABG00000021919) ENSCABG00000021921 ENSCABG00000021922 #22 ENSCABG00000021923 #22 FAM120A (ENSCABG00000021925) PHF2 (ENSCABG00000021927) BARX1 (ENSCABG00000021928) PTPDC1 (ENSCABG00000021929) ENSCABG00000021930 Emydidae ANCESTRAL SPECIES 9 ENSGT01010000222658 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00390000018085.a.b.a ENSGT00940000154902.k #22 ENSGT00940000154902.j.a #22 ENSGT00530000063168.a.a.a ENSGT00940000158148 ENSGT00940000160218 ENSGT00390000004113 ENSGT00940000162955 ENSGT00940000158523 ENSGT00940000156047 ENSGT00940000156308 ENSGT00390000009491.d ENSGT00940000156915 ENSGT00940000157312 ENSGT00390000008330 ENSGT00940000163561 ENSGT00950000183014.f.b.a.b painted turtle MODERN SPECIES 884 ENSCPBG00000017952 LRRN4CL (ENSCPBG00000017956) BSCL2 (ENSCPBG00000017959) GNG3 (ENSCPBG00000017960) ENSCPBG00000017961 HNRNPUL2 (ENSCPBG00000017963) ENSCPBG00000017964 ENSCPBG00000017965 ENSCPBG00000017967 ENSCPBG00000017968 ZBTB3 (ENSCPBG00000017969) ENSCPBG00000017970 POLR2G (ENSCPBG00000017972) EEF1G (ENSCPBG00000017974) ENSCPBG00000017976 ENSCPBG00000017978 #22 ENSCPBG00000017981 #22 ENSCPBG00000017984 #22 Three-toed box turtle DUPLICATION Three-toed box turtle MODERN SPECIES 2853 ENSTMTG00000011865 #22 Three-toed box turtle MODERN SPECIES 33 ENSTMTG00000012942 UBXN1 (ENSTMTG00000012978) ENSTMTG00000012995 LRRN4CL (ENSTMTG00000013015) BSCL2 (ENSTMTG00000013029) GNG3 (ENSTMTG00000013041) ENSTMTG00000013079 HNRNPUL2 (ENSTMTG00000013466) TTC9C (ENSTMTG00000013495) ENSTMTG00000013508 ENSTMTG00000013525 ZBTB3 (ENSTMTG00000013561) ENSTMTG00000013589 POLR2G (ENSTMTG00000013614) EEF1G (ENSTMTG00000013633) ENSTMTG00000013656 #22 ENSTMTG00000013689 #22 FAM120A (ENSTMTG00000013895) PHF2 (ENSTMTG00000013921) BARX1 (ENSTMTG00000013965) PTPDC1 (ENSTMTG00000013986) ENSTMTG00000014035 WNT7A (ENSTMTG00000014061) FBLN2 (ENSTMTG00000014092) Lepidosauria ANCESTRAL SPECIES 47 ENSGT00510000049875 ENSGT00940000156457 ENSGT00940000156484.a ENSGT00940000162696 ENSGT00390000011639 ENSGT01100000263497.B ENSGT00390000015553.a.a.a ENSGT00940000160376 ENSGT00940000161805 ENSGT00950000183181.A.b ENSGT00940000161852.z ENSGT00940000161486 ENSGT00950000183059.a ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000154902 #22 tuatara DUPLICATION tuatara MODERN SPECIES 174 ENSSPUG00000008402 CSKMT (ENSSPUG00000008416) ENSSPUG00000008424 UBXN1 (ENSSPUG00000008433) BSCL2 (ENSSPUG00000008452) GNG3 (ENSSPUG00000008465) ENSSPUG00000008490 TTC9C (ENSSPUG00000008571) ENSSPUG00000008578 ENSSPUG00000008591 ZBTB3 (ENSSPUG00000008600) ENSSPUG00000008606 POLR2G (ENSSPUG00000008614) EEF1G (ENSSPUG00000008624) ENSSPUG00000008634 #22 ENSSPUG00000008651 #22 tuatara MODERN SPECIES 174 ENSSPUG00000008394 ENSSPUG00000008402 CSKMT (ENSSPUG00000008416) ENSSPUG00000008424 UBXN1 (ENSSPUG00000008433) BSCL2 (ENSSPUG00000008452) GNG3 (ENSSPUG00000008465) ENSSPUG00000008490 TTC9C (ENSSPUG00000008571) ENSSPUG00000008578 ENSSPUG00000008591 ZBTB3 (ENSSPUG00000008600) ENSSPUG00000008606 POLR2G (ENSSPUG00000008614) EEF1G (ENSSPUG00000008624) ENSSPUG00000008634 #22 ENSSPUG00000008651 #22 Episquamata ANCESTRAL SPECIES 28 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000158249 ENSGT01030000234517.G ENSGT00930000151054 ENSGT00530000063721.B ENSGT00940000161002 ENSGT00940000155978.b ENSGT01090000260186 Toxicofera ANCESTRAL SPECIES 78 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000168352 Elapidae ANCESTRAL SPECIES 55 ENSGT01030000234598.b.b ENSGT00390000010028 ENSGT01070000254712 ENSGT00390000009753 ENSGT00390000001738 ENSGT00940000162464 ENSGT00390000000417.a.a.b.a.a.b ENSGT00390000017147 ENSGT00390000007479 ENSGT00390000017253 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000168352 Indian cobra DUPLICATION Indian cobra MODERN SPECIES 17 ENSNNAG00000005504 SSR2 (ENSNNAG00000005481) ENSNNAG00000005464 CCT3 (ENSNNAG00000005361) ENSNNAG00000005337 ENSNNAG00000005268 ZFPL1 (ENSNNAG00000005205) VPS51 (ENSNNAG00000005175) ENSNNAG00000005167 TM7SF2 (ENSNNAG00000005130) ENSNNAG00000005116 MRPL49 (ENSNNAG00000005098) ENSNNAG00000005048 EEF1G (ENSNNAG00000005019) ENSNNAG00000005002 #22 ENSNNAG00000004831 #22 ENSNNAG00000004777 ARL2 (ENSNNAG00000004763) SNX15 (ENSNNAG00000004743) ENSNNAG00000004725 ENSNNAG00000004703 GPHA2 (ENSNNAG00000004684) PPP2R5B (ENSNNAG00000004617) ENSNNAG00000004593 ENSNNAG00000004581 ENSNNAG00000004560 USF1 (ENSNNAG00000004502) IRGC (ENSNNAG00000004477) ITLN1 (ENSNNAG00000004442) TXNIP (ENSNNAG00000004423) ENSNNAG00000004397 Indian cobra MODERN SPECIES 17 ENSNNAG00000005517 ENSNNAG00000005504 SSR2 (ENSNNAG00000005481) ENSNNAG00000005464 CCT3 (ENSNNAG00000005361) ENSNNAG00000005337 ENSNNAG00000005268 ZFPL1 (ENSNNAG00000005205) VPS51 (ENSNNAG00000005175) ENSNNAG00000005167 TM7SF2 (ENSNNAG00000005130) ENSNNAG00000005116 MRPL49 (ENSNNAG00000005098) ENSNNAG00000005048 EEF1G (ENSNNAG00000005019) ENSNNAG00000005002 #22 ENSNNAG00000004831 #22 ENSNNAG00000004777 ARL2 (ENSNNAG00000004763) SNX15 (ENSNNAG00000004743) ENSNNAG00000004725 ENSNNAG00000004703 GPHA2 (ENSNNAG00000004684) PPP2R5B (ENSNNAG00000004617) ENSNNAG00000004593 ENSNNAG00000004581 ENSNNAG00000004560 USF1 (ENSNNAG00000004502) IRGC (ENSNNAG00000004477) ITLN1 (ENSNNAG00000004442) TXNIP (ENSNNAG00000004423) Elapidae_a ANCESTRAL SPECIES 119 ENSGT01030000234598.b.b ENSGT00390000010028 ENSGT01070000254712 ENSGT00390000009753 ENSGT00390000001738 ENSGT00940000162464 ENSGT00390000000417.a.a.b.a.a.b ENSGT00390000017147 ENSGT00390000007479 ENSGT00390000017253 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000168352 Acanthophiinae ANCESTRAL SPECIES 111 ENSGT01030000234598.b.b ENSGT00390000010028 ENSGT01070000254712 ENSGT00390000009753 ENSGT00390000001738 ENSGT00940000162464 ENSGT00390000000417.a.a.b.a.a.b ENSGT00390000017147 ENSGT00390000007479 ENSGT00390000017253 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000168352 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 251 F11R (ENSNSUG00000016835) USF1 (ENSNSUG00000016836) ARHGAP30 (ENSNSUG00000016837) ENSNSUG00000016838 NAALADL1 (ENSNSUG00000016839) ZFPL1 (ENSNSUG00000016840) VPS51 (ENSNSUG00000016841) ENSNSUG00000016842 TM7SF2 (ENSNSUG00000016846) ZNHIT2 (ENSNSUG00000016893) FAU (ENSNSUG00000016894) MRPL49 (ENSNSUG00000016895) ENSNSUG00000016896 ENSNSUG00000016897 ENSNSUG00000016898 #22 ENSNSUG00000016899 #22 SAC3D1 (ENSNSUG00000016900) ARL2 (ENSNSUG00000016901) Mainland tiger snake MODERN SPECIES 251 ENSNSUG00000016833 F11R (ENSNSUG00000016835) USF1 (ENSNSUG00000016836) ARHGAP30 (ENSNSUG00000016837) ENSNSUG00000016838 NAALADL1 (ENSNSUG00000016839) ZFPL1 (ENSNSUG00000016840) VPS51 (ENSNSUG00000016841) ENSNSUG00000016842 TM7SF2 (ENSNSUG00000016846) ZNHIT2 (ENSNSUG00000016893) FAU (ENSNSUG00000016894) MRPL49 (ENSNSUG00000016895) ENSNSUG00000016896 ENSNSUG00000016897 ENSNSUG00000016898 #22 ENSNSUG00000016899 #22 SAC3D1 (ENSNSUG00000016900) ARL2 (ENSNSUG00000016901) Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 1496 ENSPTXG00000015447 #22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 96 ENSPTXG00000016561 ENSPTXG00000016560 TMEM79 (ENSPTXG00000016559) ENSPTXG00000016558 ENSPTXG00000016557 CDCA5 (ENSPTXG00000016552) ENSPTXG00000016548 VPS51 (ENSPTXG00000016545) ENSPTXG00000016544 TM7SF2 (ENSPTXG00000016535) ZNHIT2 (ENSPTXG00000016529) FAU (ENSPTXG00000016527) MRPL49 (ENSPTXG00000016524) ENSPTXG00000016522 ENSPTXG00000016521 ENSPTXG00000016519 #22 ENSPTXG00000016515 #22 SAC3D1 (ENSPTXG00000016512) ARL2 (ENSPTXG00000016510) SNX15 (ENSPTXG00000016507) ENSPTXG00000016505 GPHA2 (ENSPTXG00000016503) PPP2R5B (ENSPTXG00000016501) ENSPTXG00000016498 ATG2A (ENSPTXG00000016494) ENSPTXG00000016490 ENSPTXG00000016488 PC (ENSPTXG00000016469) ENSPTXG00000016468 ENSPTXG00000016467 HAPLN2 (ENSPTXG00000016465) Eastern brown snake MODERN SPECIES 96 ENSPTXG00000016560 TMEM79 (ENSPTXG00000016559) ENSPTXG00000016558 ENSPTXG00000016557 CDCA5 (ENSPTXG00000016552) ENSPTXG00000016548 VPS51 (ENSPTXG00000016545) ENSPTXG00000016544 TM7SF2 (ENSPTXG00000016535) ZNHIT2 (ENSPTXG00000016529) FAU (ENSPTXG00000016527) MRPL49 (ENSPTXG00000016524) ENSPTXG00000016522 ENSPTXG00000016521 ENSPTXG00000016519 #22 ENSPTXG00000016515 #22 SAC3D1 (ENSPTXG00000016512) ARL2 (ENSPTXG00000016510) SNX15 (ENSPTXG00000016507) ENSPTXG00000016505 GPHA2 (ENSPTXG00000016503) PPP2R5B (ENSPTXG00000016501) ENSPTXG00000016498 ATG2A (ENSPTXG00000016494) ENSPTXG00000016490 ENSPTXG00000016488 PC (ENSPTXG00000016469) ENSPTXG00000016468 ENSPTXG00000016467 HAPLN2 (ENSPTXG00000016465) RHBG (ENSPTXG00000016463) Blue-lipped sea krait DUPLICATION Blue-lipped sea krait MODERN SPECIES 8134 ENSLLTG00000014507 #22 SAC3D1 (ENSLLTG00000014510) ARL2 (ENSLLTG00000014512) Blue-lipped sea krait MODERN SPECIES 7052 ENSLLTG00000005142 #22 Lizard DUPLICATION Lizard MODERN SPECIES 1649 ENSACAG00000043737 #22 ENSACAG00000034641 #22 ENSACAG00000003559 ENSACAG00000003536 ENSACAG00000035019 ENSACAG00000003518 ENSACAG00000041135 ENSACAG00000022762 ENSACAG00000003486 ENSACAG00000026804 Lizard MODERN SPECIES 1649 ENSACAG00000043737 #22 ENSACAG00000034641 #22 ENSACAG00000003559 ENSACAG00000003536 ENSACAG00000035019 ENSACAG00000003518 ENSACAG00000041135 ENSACAG00000022762 ENSACAG00000003486 ENSACAG00000026804 Laterata ANCESTRAL SPECIES 60 ENSGT00390000007552 ENSGT00940000154902 #22 ENSGT00940000160988 ENSGT00940000157941 ENSGT00940000160125 ENSGT00940000164485 ENSGT00390000009379 ENSGT01030000234620.a.b.b.a ENSGT00940000154901.C.b.f.a ENSGT00620000087966.b ENSGT00940000158249 ENSGT01030000234517.G ENSGT00930000151054 ENSGT00390000003837 ENSGT00530000063721.B ENSGT00940000161002 ENSGT00940000155978.b Common wall lizard DUPLICATION Common wall lizard MODERN SPECIES 7 ANKRD35 (ENSPMRG00000017060) PIAS3 (ENSPMRG00000017047) NUDT17 (ENSPMRG00000017035) ENSPMRG00000017028 PAQR6 (ENSPMRG00000017021) SMG5 (ENSPMRG00000017013) TMEM79 (ENSPMRG00000017009) GLMP (ENSPMRG00000018637) CCT3 (ENSPMRG00000018628) ENSPMRG00000018624 SSR2 (ENSPMRG00000018621) CST6 (ENSPMRG00000018614) NAALADL1 (ENSPMRG00000018264) EEF1G (ENSPMRG00000018217) ENSPMRG00000018212 #22 AHNAK (ENSPMRG00000018207) #22 SAC3D1 (ENSPMRG00000018206) ARL2 (ENSPMRG00000018200) SNX15 (ENSPMRG00000018184) ENSPMRG00000018172 ENSPMRG00000018169 PPP2R5B (ENSPMRG00000018160) ENSPMRG00000018145 ATG2A (ENSPMRG00000018117) EHD1 (ENSPMRG00000018098) CDC42BPG (ENSPMRG00000016721) SCYL1 (ENSPMRG00000016541) ENSPMRG00000016533 ENSPMRG00000016527 ENSPMRG00000016509 FRMD8 (ENSPMRG00000016497) Common wall lizard MODERN SPECIES 7 ENSPMRG00000017067 ANKRD35 (ENSPMRG00000017060) PIAS3 (ENSPMRG00000017047) NUDT17 (ENSPMRG00000017035) ENSPMRG00000017028 PAQR6 (ENSPMRG00000017021) SMG5 (ENSPMRG00000017013) TMEM79 (ENSPMRG00000017009) GLMP (ENSPMRG00000018637) CCT3 (ENSPMRG00000018628) ENSPMRG00000018624 SSR2 (ENSPMRG00000018621) CST6 (ENSPMRG00000018614) NAALADL1 (ENSPMRG00000018264) EEF1G (ENSPMRG00000018217) ENSPMRG00000018212 #22 AHNAK (ENSPMRG00000018207) #22 SAC3D1 (ENSPMRG00000018206) ARL2 (ENSPMRG00000018200) SNX15 (ENSPMRG00000018184) ENSPMRG00000018172 ENSPMRG00000018169 PPP2R5B (ENSPMRG00000018160) ENSPMRG00000018145 ATG2A (ENSPMRG00000018117) EHD1 (ENSPMRG00000018098) CDC42BPG (ENSPMRG00000016721) SCYL1 (ENSPMRG00000016541) ENSPMRG00000016533 ENSPMRG00000016527 ENSPMRG00000016509 Argentine black and white tegu DUPLICATION Argentine black and white tegu MODERN SPECIES 80 ENSSMRG00000020368 PELI3 (ENSSMRG00000020369) DPP3 (ENSSMRG00000020370) BBS1 (ENSSMRG00000020371) ENSSMRG00000020372 ENSSMRG00000020374 FOSL1 (ENSSMRG00000020375) CCDC85B (ENSSMRG00000020376) FIBP (ENSSMRG00000020377) EFEMP2 (ENSSMRG00000020378) MUS81 (ENSSMRG00000020379) CFL1 (ENSSMRG00000020380) CD248 (ENSSMRG00000020381) EEF1G (ENSSMRG00000020382) ENSSMRG00000020384 #22 ENSSMRG00000020385 #22 SAC3D1 (ENSSMRG00000020386) ARL2 (ENSSMRG00000020387) SNX15 (ENSSMRG00000020388) ENSSMRG00000020389 GPHA2 (ENSSMRG00000020392) PPP2R5B (ENSSMRG00000020394) ATG2A (ENSSMRG00000021175) EHD1 (ENSSMRG00000021176) MEN1 (ENSSMRG00000021177) LTBP3 (ENSSMRG00000021178) SIPA1 (ENSSMRG00000021179) PCNX3 (ENSSMRG00000021180) MAP3K11 (ENSSMRG00000021181) ENSSMRG00000021182 EHBP1L1 (ENSSMRG00000021183) Argentine black and white tegu MODERN SPECIES 80 DRAP1 (ENSSMRG00000020367) ENSSMRG00000020368 PELI3 (ENSSMRG00000020369) DPP3 (ENSSMRG00000020370) BBS1 (ENSSMRG00000020371) ENSSMRG00000020372 ENSSMRG00000020374 FOSL1 (ENSSMRG00000020375) CCDC85B (ENSSMRG00000020376) FIBP (ENSSMRG00000020377) EFEMP2 (ENSSMRG00000020378) MUS81 (ENSSMRG00000020379) CFL1 (ENSSMRG00000020380) CD248 (ENSSMRG00000020381) EEF1G (ENSSMRG00000020382) ENSSMRG00000020384 #22 ENSSMRG00000020385 #22 SAC3D1 (ENSSMRG00000020386) ARL2 (ENSSMRG00000020387) SNX15 (ENSSMRG00000020388) ENSSMRG00000020389 GPHA2 (ENSSMRG00000020392) PPP2R5B (ENSSMRG00000020394) ATG2A (ENSSMRG00000021175) EHD1 (ENSSMRG00000021176) MEN1 (ENSSMRG00000021177) LTBP3 (ENSSMRG00000021178) SIPA1 (ENSSMRG00000021179) PCNX3 (ENSSMRG00000021180) MAP3K11 (ENSSMRG00000021181) ENSSMRG00000021182