Mus	ANCESTRAL SPECIES	6	ENSGT00940000159578 #9	ENSGT00530000063553.b.b #10	ENSGT00940000154837.f.y.b #11	ENSGT00940000158682 #12	ENSGT00940000159811 #13	ENSGT00390000014556 #14	ENSGT00940000158492 #15	ENSGT00390000008576	ENSGT00390000012529	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #26	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36	ENSGT00940000158960 #37
Shrew mouse	MODERN SPECIES	12	MGP_PahariEiJ_G0022945 #7	Phkb (MGP_PahariEiJ_G0022946) #8	Abcc12 (MGP_PahariEiJ_G0022947) #9	Lonp2 (MGP_PahariEiJ_G0022948) #10	Siah1a (MGP_PahariEiJ_G0022949) #11	N4bp1 (MGP_PahariEiJ_G0022950) #12	Cbln1 (MGP_PahariEiJ_G0022951) #13	4933402J07Rik (MGP_PahariEiJ_G0022952) #14	Zfp423 (MGP_PahariEiJ_G0022953) #15	Tent4b (MGP_PahariEiJ_G0022954) #16	Adcy7 (MGP_PahariEiJ_G0022955) #17	Brd7 (MGP_PahariEiJ_G0022956) #18	Nkd1 (MGP_PahariEiJ_G0022957) #19	Snx20 (MGP_PahariEiJ_G0022958) #20	Nod2 (MGP_PahariEiJ_G0022959) #21	Cyld (MGP_PahariEiJ_G0022960) #22	Sall1 (MGP_PahariEiJ_G0022961) #23	Tox3 (MGP_PahariEiJ_G0022962) #24	MGP_PahariEiJ_G0022963 #25	Chd9 (MGP_PahariEiJ_G0022964) #26	Rbl2 (MGP_PahariEiJ_G0022965) #27	Aktip (MGP_PahariEiJ_G0022966) #28	Rpgrip1l (MGP_PahariEiJ_G0022967) #29	Fto (MGP_PahariEiJ_G0022968) #30	Irx3 (MGP_PahariEiJ_G0022969) #31	Irx5 (MGP_PahariEiJ_G0022970) #32	Irx6 (MGP_PahariEiJ_G0022971) #33	Mmp2 (MGP_PahariEiJ_G0022972) #34	Lpcat2 (MGP_PahariEiJ_G0022973) #35	Capns2 (MGP_PahariEiJ_G0022974) #36	Slc6a2 (MGP_PahariEiJ_G0022975) #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000154837.f.y.a ##11	ENSGT00860000136300	ENSGT00940000154837.f.y.b #11	ENSGT00940000158682 #12	ENSGT00940000159811 #13	ENSGT00390000014556 #14	ENSGT00940000158492 #15	ENSGT00390000008576	ENSGT00390000012529	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #26	ENSGT00900000143414 #25	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000154837.f.y.a ##11	ENSGT00860000136300	ENSGT00940000154837.f.y.b #11	ENSGT00940000158682 #12	ENSGT00940000159811 #13	ENSGT00390000014556 #14	ENSGT00940000158492 #15	ENSGT00390000008576	ENSGT00390000012529	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #26	ENSGT00900000143414 #25	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000154837.f.y.a ##11	ENSGT00860000136300	ENSGT00940000154837.f.y.b #11	ENSGT00940000158682 #12	ENSGT00940000159811 #13	ENSGT00390000014556 #14	ENSGT00940000158492 #15	ENSGT00390000008576	ENSGT00390000012529	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00940000155706 #26	ENSGT00900000143414 #25	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36	ENSGT00940000158960 #37
Steppe mouse	MODERN SPECIES	3333											Adcy7 (ENSMSIG00000023201) #17	Brd7 (ENSMSIG00000023142) #18	Nkd1 (ENSMSIG00000023101) #19	Snx20 (ENSMSIG00000023092) #20	Nod2 (ENSMSIG00000023038) #21	Cyld (ENSMSIG00000022860) #22	Sall1 (ENSMSIG00000022842) #23	ENSMSIG00000022807	ENSMSIG00000022804	Tox3 (ENSMSIG00000022770) #24	ENSMSIG00000022761	Gm19935 (ENSMSIG00000022743)	Chd9 (ENSMSIG00000022627) #26	Aktip (ENSMSIG00000022576) #28	Rbl2 (ENSMSIG00000022400) #27	Rpgrip1l (ENSMSIG00000022275) #29	Fto (ENSMSIG00000022229) #30	Irx3 (ENSMSIG00000022187) #31	ENSMSIG00000022154	ENSMSIG00000022098 #32	Irx6 (ENSMSIG00000022060) #33
spretus	MODERN SPECIES	17	Lonp2 (MGP_SPRETEiJ_G0032464) #10	MGP_SPRETEiJ_G0032465 ##11	MGP_SPRETEiJ_G0032466	N4bp1 (MGP_SPRETEiJ_G0032467) #12	Cbln1 (MGP_SPRETEiJ_G0032468) #13	4933402J07Rik (MGP_SPRETEiJ_G0032469) #14	Zfp423 (MGP_SPRETEiJ_G0032470) #15	Cnep1r1 (MGP_SPRETEiJ_G0032471)	Heatr3 (MGP_SPRETEiJ_G0032472)	Tent4b (MGP_SPRETEiJ_G0032473) #16	Adcy7 (MGP_SPRETEiJ_G0032474) #17	Brd7 (MGP_SPRETEiJ_G0032475) #18	Nkd1 (MGP_SPRETEiJ_G0032476) #19	Snx20 (MGP_SPRETEiJ_G0032477) #20	Nod2 (MGP_SPRETEiJ_G0032478) #21	Cyld (MGP_SPRETEiJ_G0032479) #22	Sall1 (MGP_SPRETEiJ_G0032480) #23	MGP_SPRETEiJ_G0032481	Tox3 (MGP_SPRETEiJ_G0032482) #24	Chd9 (MGP_SPRETEiJ_G0032483) #26	MGP_SPRETEiJ_G0032484 #25	Rbl2 (MGP_SPRETEiJ_G0032485) #27	Aktip (MGP_SPRETEiJ_G0032486) #28	Rpgrip1l (MGP_SPRETEiJ_G0032487) #29	Fto (MGP_SPRETEiJ_G0032488) #30	Irx3 (MGP_SPRETEiJ_G0032489) #31	Irx5 (MGP_SPRETEiJ_G0032490) #32	Irx6 (MGP_SPRETEiJ_G0032491) #33	Mmp2 (MGP_SPRETEiJ_G0032492) #34	Lpcat2 (MGP_SPRETEiJ_G0032493) #35	Capns2 (MGP_SPRETEiJ_G0032494) #36
Mouse	MODERN SPECIES	17	Abcc12 (ENSMUSG00000036872) #9	Lonp2 (ENSMUSG00000047866) #10	Siah1a (ENSMUSG00000036840) #11	N4bp1 (ENSMUSG00000031652) #12	Cbln1 (ENSMUSG00000031654) #13	4933402J07Rik (ENSMUSG00000069971) #14	Zfp423 (ENSMUSG00000045333) #15	Cnep1r1 (ENSMUSG00000036810)	Heatr3 (ENSMUSG00000031657)	Tent4b (ENSMUSG00000036779) #16	Adcy7 (ENSMUSG00000031659) #17	Brd7 (ENSMUSG00000031660) #18	Nkd1 (ENSMUSG00000031661) #19	Snx20 (ENSMUSG00000031662) #20	Nod2 (ENSMUSG00000055994) #21	Cyld (ENSMUSG00000036712) #22	Sall1 (ENSMUSG00000031665) #23	Tox3 (ENSMUSG00000043668) #24	Gm19935 (ENSMUSG00000110332)	Chd9 (ENSMUSG00000056608) #26	Rbl2 (ENSMUSG00000031666) #27	Aktip (ENSMUSG00000031667) #28	Rpgrip1l (ENSMUSG00000033282) #29	Fto (ENSMUSG00000055932) #30	Irx3 (ENSMUSG00000031734) #31	Irx5 (ENSMUSG00000031737) #32	Irx6 (ENSMUSG00000031738) #33	Mmp2 (ENSMUSG00000031740) #34	Lpcat2 (ENSMUSG00000033192) #35	Capns2 (ENSMUSG00000078144) #36	Slc6a2 (ENSMUSG00000055368) #37
Ryukyu mouse	MODERN SPECIES	17	MGP_CAROLIEiJ_G0031346 ##11	MGP_CAROLIEiJ_G0031347 ##11	MGP_CAROLIEiJ_G0031348	N4bp1 (MGP_CAROLIEiJ_G0031349) #12	Cbln1 (MGP_CAROLIEiJ_G0031350) #13	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #14	Zfp423 (MGP_CAROLIEiJ_G0031352) #15	Cnep1r1 (MGP_CAROLIEiJ_G0031353)	Heatr3 (MGP_CAROLIEiJ_G0031354)	Tent4b (MGP_CAROLIEiJ_G0031355) #16	Adcy7 (MGP_CAROLIEiJ_G0031356) #17	Brd7 (MGP_CAROLIEiJ_G0031357) #18	Nkd1 (MGP_CAROLIEiJ_G0031358) #19	Snx20 (MGP_CAROLIEiJ_G0031359) #20	Nod2 (MGP_CAROLIEiJ_G0031360) #21	Cyld (MGP_CAROLIEiJ_G0031361) #22	Sall1 (MGP_CAROLIEiJ_G0031362) #23	Tox3 (MGP_CAROLIEiJ_G0031363) #24	Chd9 (MGP_CAROLIEiJ_G0031364) #26	MGP_CAROLIEiJ_G0031365 #25	Rbl2 (MGP_CAROLIEiJ_G0031366) #27	Aktip (MGP_CAROLIEiJ_G0031367) #28	Rpgrip1l (MGP_CAROLIEiJ_G0031368) #29	Fto (MGP_CAROLIEiJ_G0031369) #30	Irx3 (MGP_CAROLIEiJ_G0031370) #31	Irx5 (MGP_CAROLIEiJ_G0031371) #32	Irx6 (MGP_CAROLIEiJ_G0031372) #33	Mmp2 (MGP_CAROLIEiJ_G0031373) #34	Lpcat2 (MGP_CAROLIEiJ_G0031374) #35	Capns2 (MGP_CAROLIEiJ_G0031375) #36	Slc6a2 (MGP_CAROLIEiJ_G0031376) #37