Murinae	ANCESTRAL SPECIES	15	ENSGT00940000159578	ENSGT00530000063553.b.b	ENSGT00940000154837.f.y.b ##8	ENSGT00940000158682 #10	ENSGT00940000159811 #11	ENSGT00390000014556 #12	ENSGT00940000158492 #13	ENSGT00390000008576 #14	ENSGT00390000012529 #15	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #25	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36	ENSGT00940000158960 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000159578	ENSGT00530000063553.b.b	ENSGT00940000154837.f.y.b ##8	ENSGT00940000158682 #10	ENSGT00940000159811 #11	ENSGT00390000014556 #12	ENSGT00940000158492 #13	ENSGT00390000008576 #14	ENSGT00390000012529 #15	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #25	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36	ENSGT00940000158960 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000154837.f.y.a #8	ENSGT00860000136300 #9	ENSGT00940000154837.f.y.b ##8	ENSGT00940000158682 #10	ENSGT00940000159811 #11	ENSGT00390000014556 #12	ENSGT00940000158492 #13	ENSGT00390000008576 #14	ENSGT00390000012529 #15	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #25	ENSGT00900000143414 #26	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36
Ryukyu mouse	MODERN SPECIES	17	MGP_CAROLIEiJ_G0031346 #7	MGP_CAROLIEiJ_G0031347 #8	MGP_CAROLIEiJ_G0031348 #9	N4bp1 (MGP_CAROLIEiJ_G0031349) #10	Cbln1 (MGP_CAROLIEiJ_G0031350) #11	4933402J07Rik (MGP_CAROLIEiJ_G0031351) #12	Zfp423 (MGP_CAROLIEiJ_G0031352) #13	Cnep1r1 (MGP_CAROLIEiJ_G0031353) #14	Heatr3 (MGP_CAROLIEiJ_G0031354) #15	Tent4b (MGP_CAROLIEiJ_G0031355) #16	Adcy7 (MGP_CAROLIEiJ_G0031356) #17	Brd7 (MGP_CAROLIEiJ_G0031357) #18	Nkd1 (MGP_CAROLIEiJ_G0031358) #19	Snx20 (MGP_CAROLIEiJ_G0031359) #20	Nod2 (MGP_CAROLIEiJ_G0031360) #21	Cyld (MGP_CAROLIEiJ_G0031361) #22	Sall1 (MGP_CAROLIEiJ_G0031362) #23	Tox3 (MGP_CAROLIEiJ_G0031363) #24	Chd9 (MGP_CAROLIEiJ_G0031364) #25	MGP_CAROLIEiJ_G0031365 #26	Rbl2 (MGP_CAROLIEiJ_G0031366) #27	Aktip (MGP_CAROLIEiJ_G0031367) #28	Rpgrip1l (MGP_CAROLIEiJ_G0031368) #29	Fto (MGP_CAROLIEiJ_G0031369) #30	Irx3 (MGP_CAROLIEiJ_G0031370) #31	Irx5 (MGP_CAROLIEiJ_G0031371) #32	Irx6 (MGP_CAROLIEiJ_G0031372) #33	Mmp2 (MGP_CAROLIEiJ_G0031373) #34	Lpcat2 (MGP_CAROLIEiJ_G0031374) #35	Capns2 (MGP_CAROLIEiJ_G0031375) #36	Slc6a2 (MGP_CAROLIEiJ_G0031376) #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000154837.f.y.a #8	ENSGT00860000136300 #9	ENSGT00940000154837.f.y.b ##8	ENSGT00940000158682 #10	ENSGT00940000159811 #11	ENSGT00390000014556 #12	ENSGT00940000158492 #13	ENSGT00390000008576 #14	ENSGT00390000012529 #15	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00980000198839	ENSGT00940000155706 #25	ENSGT00900000143414 #26	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000154837.f.y.a #8	ENSGT00860000136300 #9	ENSGT00940000154837.f.y.b ##8	ENSGT00940000158682 #10	ENSGT00940000159811 #11	ENSGT00390000014556 #12	ENSGT00940000158492 #13	ENSGT00390000008576 #14	ENSGT00390000012529 #15	ENSGT00940000158301 #16	ENSGT00940000159096 #17	ENSGT00950000183170.a #18	ENSGT00440000033589.c #19	ENSGT00530000063759.a #20	ENSGT00940000160934 #21	ENSGT00390000018123.a.a #22	ENSGT00940000155938 #23	ENSGT00940000158043 #24	ENSGT00940000155706 #25	ENSGT00900000143414 #26	ENSGT00950000183202.a.b #27	ENSGT00390000010125 #28	ENSGT00520000055620.B #29	ENSGT00390000017730 #30	ENSGT00940000161299 #31	ENSGT00940000159483 #32	ENSGT00940000159909 #33	ENSGT00940000158511 #34	ENSGT01030000234574.A.b.a.a #35	ENSGT00940000166682 #36	ENSGT00940000158960 #37
Steppe mouse	MODERN SPECIES	3333											Adcy7 (ENSMSIG00000023201) #17	Brd7 (ENSMSIG00000023142) #18	Nkd1 (ENSMSIG00000023101) #19	Snx20 (ENSMSIG00000023092) #20	Nod2 (ENSMSIG00000023038) #21	Cyld (ENSMSIG00000022860) #22	Sall1 (ENSMSIG00000022842) #23	ENSMSIG00000022807	ENSMSIG00000022804	Tox3 (ENSMSIG00000022770) #24	ENSMSIG00000022761	Gm19935 (ENSMSIG00000022743)	Chd9 (ENSMSIG00000022627) #25	Aktip (ENSMSIG00000022576) #28	Rbl2 (ENSMSIG00000022400) #27	Rpgrip1l (ENSMSIG00000022275) #29	Fto (ENSMSIG00000022229) #30	Irx3 (ENSMSIG00000022187) #31	ENSMSIG00000022154	ENSMSIG00000022098 #32	Irx6 (ENSMSIG00000022060) #33
spretus	MODERN SPECIES	17	Lonp2 (MGP_SPRETEiJ_G0032464)	MGP_SPRETEiJ_G0032465 #8	MGP_SPRETEiJ_G0032466 #9	N4bp1 (MGP_SPRETEiJ_G0032467) #10	Cbln1 (MGP_SPRETEiJ_G0032468) #11	4933402J07Rik (MGP_SPRETEiJ_G0032469) #12	Zfp423 (MGP_SPRETEiJ_G0032470) #13	Cnep1r1 (MGP_SPRETEiJ_G0032471) #14	Heatr3 (MGP_SPRETEiJ_G0032472) #15	Tent4b (MGP_SPRETEiJ_G0032473) #16	Adcy7 (MGP_SPRETEiJ_G0032474) #17	Brd7 (MGP_SPRETEiJ_G0032475) #18	Nkd1 (MGP_SPRETEiJ_G0032476) #19	Snx20 (MGP_SPRETEiJ_G0032477) #20	Nod2 (MGP_SPRETEiJ_G0032478) #21	Cyld (MGP_SPRETEiJ_G0032479) #22	Sall1 (MGP_SPRETEiJ_G0032480) #23	MGP_SPRETEiJ_G0032481	Tox3 (MGP_SPRETEiJ_G0032482) #24	Chd9 (MGP_SPRETEiJ_G0032483) #25	MGP_SPRETEiJ_G0032484 #26	Rbl2 (MGP_SPRETEiJ_G0032485) #27	Aktip (MGP_SPRETEiJ_G0032486) #28	Rpgrip1l (MGP_SPRETEiJ_G0032487) #29	Fto (MGP_SPRETEiJ_G0032488) #30	Irx3 (MGP_SPRETEiJ_G0032489) #31	Irx5 (MGP_SPRETEiJ_G0032490) #32	Irx6 (MGP_SPRETEiJ_G0032491) #33	Mmp2 (MGP_SPRETEiJ_G0032492) #34	Lpcat2 (MGP_SPRETEiJ_G0032493) #35	Capns2 (MGP_SPRETEiJ_G0032494) #36
Mouse	MODERN SPECIES	17	Abcc12 (ENSMUSG00000036872)	Lonp2 (ENSMUSG00000047866)	Siah1a (ENSMUSG00000036840) ##8	N4bp1 (ENSMUSG00000031652) #10	Cbln1 (ENSMUSG00000031654) #11	4933402J07Rik (ENSMUSG00000069971) #12	Zfp423 (ENSMUSG00000045333) #13	Cnep1r1 (ENSMUSG00000036810) #14	Heatr3 (ENSMUSG00000031657) #15	Tent4b (ENSMUSG00000036779) #16	Adcy7 (ENSMUSG00000031659) #17	Brd7 (ENSMUSG00000031660) #18	Nkd1 (ENSMUSG00000031661) #19	Snx20 (ENSMUSG00000031662) #20	Nod2 (ENSMUSG00000055994) #21	Cyld (ENSMUSG00000036712) #22	Sall1 (ENSMUSG00000031665) #23	Tox3 (ENSMUSG00000043668) #24	Gm19935 (ENSMUSG00000110332)	Chd9 (ENSMUSG00000056608) #25	Rbl2 (ENSMUSG00000031666) #27	Aktip (ENSMUSG00000031667) #28	Rpgrip1l (ENSMUSG00000033282) #29	Fto (ENSMUSG00000055932) #30	Irx3 (ENSMUSG00000031734) #31	Irx5 (ENSMUSG00000031737) #32	Irx6 (ENSMUSG00000031738) #33	Mmp2 (ENSMUSG00000031740) #34	Lpcat2 (ENSMUSG00000033192) #35	Capns2 (ENSMUSG00000078144) #36	Slc6a2 (ENSMUSG00000055368) #37
Shrew mouse	MODERN SPECIES	12	MGP_PahariEiJ_G0022945	Phkb (MGP_PahariEiJ_G0022946)	Abcc12 (MGP_PahariEiJ_G0022947)	Lonp2 (MGP_PahariEiJ_G0022948)	Siah1a (MGP_PahariEiJ_G0022949) ##8	N4bp1 (MGP_PahariEiJ_G0022950) #10	Cbln1 (MGP_PahariEiJ_G0022951) #11	4933402J07Rik (MGP_PahariEiJ_G0022952) #12	Zfp423 (MGP_PahariEiJ_G0022953) #13	Tent4b (MGP_PahariEiJ_G0022954) #16	Adcy7 (MGP_PahariEiJ_G0022955) #17	Brd7 (MGP_PahariEiJ_G0022956) #18	Nkd1 (MGP_PahariEiJ_G0022957) #19	Snx20 (MGP_PahariEiJ_G0022958) #20	Nod2 (MGP_PahariEiJ_G0022959) #21	Cyld (MGP_PahariEiJ_G0022960) #22	Sall1 (MGP_PahariEiJ_G0022961) #23	Tox3 (MGP_PahariEiJ_G0022962) #24	MGP_PahariEiJ_G0022963 #26	Chd9 (MGP_PahariEiJ_G0022964) #25	Rbl2 (MGP_PahariEiJ_G0022965) #27	Aktip (MGP_PahariEiJ_G0022966) #28	Rpgrip1l (MGP_PahariEiJ_G0022967) #29	Fto (MGP_PahariEiJ_G0022968) #30	Irx3 (MGP_PahariEiJ_G0022969) #31	Irx5 (MGP_PahariEiJ_G0022970) #32	Irx6 (MGP_PahariEiJ_G0022971) #33	Mmp2 (MGP_PahariEiJ_G0022972) #34	Lpcat2 (MGP_PahariEiJ_G0022973) #35	Capns2 (MGP_PahariEiJ_G0022974) #36	Slc6a2 (MGP_PahariEiJ_G0022975) #37
Rat	DUPLICATION
Rat	MODERN SPECIES	10	Lonp2 (ENSRNOG00000015162)	Siah1 (ENSRNOG00000015143) ##8	N4bp1 (ENSRNOG00000015121) #10	Rps15a-ps3 (ENSRNOG00000055046)	Cbln1 (ENSRNOG00000000010) #11	LOC680913 (ENSRNOG00000024182) #12	Zfp423 (ENSRNOG00000014658) #13	Cnep1r1 (ENSRNOG00000015534) #14	Heatr3 (ENSRNOG00000015459) #15	Tent4b (ENSRNOG00000024212) #16	Adcy7 (ENSRNOG00000014776) #17	Brd7 (ENSRNOG00000014419) #18	Nkd1 (ENSRNOG00000014293) #19	Snx20 (ENSRNOG00000014202) #20	Nod2 (ENSRNOG00000014124) #21	Cyld (ENSRNOG00000014048) #22	Sall1 (ENSRNOG00000013907) #23	ENSRNOG00000069574	Tox3 (ENSRNOG00000028649) #24	Chd9 (ENSRNOG00000049302) #25	Rbl2 (ENSRNOG00000012153) #27	Aktip (ENSRNOG00000011956) #28	Rpgrip1l (ENSRNOG00000011829) #29	Fto (ENSRNOG00000011728) #30	Irx3 (ENSRNOG00000011533) #31	Irx5 (ENSRNOG00000011180) #32	Irx6 (ENSRNOG00000011037) #33	Mmp2 (ENSRNOG00000016695) #34	Lpcat2 (ENSRNOG00000016643) #35	Slc6a2 (ENSRNOG00000016311) #37	Ces1a (ENSRNOG00000039725)
Rat	MODERN SPECIES	15	AABR07046956.1 (ENSRNOG00000040219)	St18 (ENSRNOG00000006200)	Alkal1 (ENSRNOG00000048703)	Rb1cc1 (ENSRNOG00000006833)	Npbwr1 (ENSRNOG00000007640)	Oprk1 (ENSRNOG00000007647)	Atp6v1h (ENSRNOG00000030862)	Rgs20 (ENSRNOG00000008100)	Tcea1 (ENSRNOG00000022323)	Lypla1 (ENSRNOG00000008320)	Mrpl15 (ENSRNOG00000008566)	Sox17 (ENSRNOG00000027357)	Sumo4 (ENSRNOG00000069967)	ENSRNOG00000065942	Rp1 (ENSRNOG00000008807)	Cyld-ps1 (ENSRNOG00000008861) #22	Xkr4 (ENSRNOG00000027276)	Tmem68 (ENSRNOG00000008872)	Tgs1 (ENSRNOG00000008156)	Lyn (ENSRNOG00000008180)	Rps20-ps10 (ENSRNOG00000008555)	Mos (ENSRNOG00000008567)	LOC100364265 (ENSRNOG00000012088)	Plag1 (ENSRNOG00000008846)	Chchd7 (ENSRNOG00000031769)	Sdr16c5 (ENSRNOG00000008871)	Sdr16c6 (ENSRNOG00000040151)	Sdr16c6 (ENSRNOG00000067216)	Penk (ENSRNOG00000008943)	RGD1563405 (ENSRNOG00000069142)	Bpnt2 (ENSRNOG00000046647)