Murinae	ANCESTRAL SPECIES	11	ENSGT00940000161381 #7	ENSGT00390000008414 #8	ENSGT01050000244850.C.b #9	ENSGT00940000156872 #10	ENSGT00940000160731 #13	ENSGT00390000005294 #11	ENSGT00940000160097 #12	ENSGT00940000160260 #14	ENSGT00390000002240 #15	ENSGT00940000157451 #16	ENSGT00390000000709 #17	ENSGT00940000159420 #18	ENSGT00530000063876.a #19	ENSGT00530000063629.a #20	ENSGT00940000155793 #21	ENSGT00940000154196.b #22	ENSGT00940000160954 #23	ENSGT00390000002089.a.b #24	ENSGT00940000156484.b #25	ENSGT00960000186787	ENSGT00940000156989 #26	ENSGT00950000182836.b.a.b #27	ENSGT00390000011724 #28	ENSGT00530000064210 #29	ENSGT01030000234620.a.b.b.b #30	ENSGT00390000017528 #31	ENSGT00940000162504 #32	ENSGT00940000156376 #33	ENSGT00940000162770 #34	ENSGT00940000161120 #35	ENSGT00390000001374 #36
Mus	ANCESTRAL SPECIES	5	ENSGT00940000161381 #7	ENSGT00390000008414 #8	ENSGT01050000244850.C.b #9	ENSGT00940000156872 #10	ENSGT00940000160731 #13	ENSGT00390000005294 #11	ENSGT00940000160097 #12	ENSGT00940000160260 #14	ENSGT00390000002240 #15	ENSGT00940000157451 #16	ENSGT00390000000709 #17	ENSGT00940000159420 #18	ENSGT00530000063876.a #19	ENSGT00530000063629.a #20	ENSGT00940000155793 #21	ENSGT00940000154196.b #22	ENSGT00940000160954 #23	ENSGT00390000002089.a.b #24	ENSGT00940000156484.b #25	ENSGT00960000186787	ENSGT00940000156989 #26	ENSGT00950000182836.b.a.b #27	ENSGT00390000011724 #28	ENSGT00530000064210 #29	ENSGT01030000234620.a.b.b.b #30	ENSGT00390000017528 #31	ENSGT00940000162504 #32	ENSGT00940000156376 #33	ENSGT00940000162770 #34	ENSGT00940000161120 #35	ENSGT00390000001374 #36
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000161381 #7	ENSGT00390000008414 #8	ENSGT01050000244850.C.b #9	ENSGT00940000156872 #10	ENSGT00940000160731 #13	ENSGT00390000005294 #11	ENSGT00940000160097 #12	ENSGT00940000160260 #14	ENSGT00390000002240 #15	ENSGT00940000157451 #16	ENSGT00390000000709 #17	ENSGT00940000159420 #18	ENSGT00530000063876.a #19	ENSGT00530000063629.a #20	ENSGT00940000155793 #21	ENSGT00940000154196.b #22	ENSGT00940000160954 #23	ENSGT00390000002089.a.b #24	ENSGT00940000156484.b #25	ENSGT00960000186787	ENSGT00940000156989 #26	ENSGT00950000182836.b.a.b #27	ENSGT00390000011724 #28	ENSGT00530000064210 #29	ENSGT01030000234620.a.b.b.b #30	ENSGT00390000017528 #31	ENSGT00940000162504 #32	ENSGT00940000156376 #33	ENSGT00940000162770 #34	ENSGT00940000161120 #35	ENSGT00390000001374 #36
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000161381 #7	ENSGT00390000008414 #8	ENSGT01050000244850.C.b #9	ENSGT00940000156872 #10	ENSGT00940000160731 #13	ENSGT00390000005294 #11	ENSGT00940000160097 #12	ENSGT00940000160260 #14	ENSGT00390000002240 #15	ENSGT00940000157451 #16	ENSGT00390000000709 #17	ENSGT00940000159420 #18	ENSGT00530000063876.a #19	ENSGT00530000063629.a #20	ENSGT00940000155793 #21	ENSGT00940000154196.b #22	ENSGT00940000160954 #23	ENSGT00390000002089.a.b #24	ENSGT00940000156484.b #25	ENSGT00960000186787	ENSGT00940000156989 #26	ENSGT00950000182836.b.a.b #27	ENSGT00390000011724 #28	ENSGT00530000064210 #29	ENSGT01030000234620.a.b.b.b #30	ENSGT00390000017528 #31	ENSGT00940000162504 #32	ENSGT00940000156376 #33	ENSGT00940000162770 #34	ENSGT00940000161120 #35	ENSGT00390000001374 #36
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000161381 #7	ENSGT00390000008414 #8	ENSGT01050000244850.C.b #9	ENSGT00940000156872 #10	ENSGT00940000160731 #13	ENSGT00390000005294 #11	ENSGT00940000160097 #12	ENSGT00940000160260 #14	ENSGT00390000002240 #15	ENSGT00940000157451 #16	ENSGT00390000000709 #17	ENSGT00940000159420 #18	ENSGT00530000063876.a #19	ENSGT00530000063629.a #20	ENSGT00940000155793 #21	ENSGT00940000154196.b #22	ENSGT00940000160954 #23	ENSGT00390000002089.a.b #24	ENSGT00940000156484.b #25	ENSGT00960000186787	ENSGT00940000156989 #26	ENSGT00950000182836.b.a.b #27	ENSGT00390000011724 #28	ENSGT00530000064210 #29	ENSGT01030000234620.a.b.b.b #30	ENSGT00390000017528 #31	ENSGT00940000162504 #32	ENSGT00940000156376 #33	ENSGT00940000162770 #34	ENSGT00940000161120 #35	ENSGT00390000001374 #36
spretus	MODERN SPECIES		Cd46 (MGP_SPRETEiJ_G0015874) #7	Cd34 (MGP_SPRETEiJ_G0015873) #8	Plxna2 (MGP_SPRETEiJ_G0015872) #9	Camk1g (MGP_SPRETEiJ_G0015871) #10	G0s2 (MGP_SPRETEiJ_G0015870) #11	Hsd11b1 (MGP_SPRETEiJ_G0015869) #12	Lamb3 (MGP_SPRETEiJ_G0015868) #13	Traf3ip3 (MGP_SPRETEiJ_G0015867) #14	A130010J15Rik (MGP_SPRETEiJ_G0015866) #15	Irf6 (MGP_SPRETEiJ_G0015865) #16	Utp25 (MGP_SPRETEiJ_G0015864) #17	MGP_SPRETEiJ_G0015863 #18	Sertad4 (MGP_SPRETEiJ_G0015862) #19	Hhat (MGP_SPRETEiJ_G0015861) #20	Kcnh1 (MGP_SPRETEiJ_G0015860) #21	Rcor3 (MGP_SPRETEiJ_G0015859) #22	MGP_SPRETEiJ_G0015858 #23	Rd3 (MGP_SPRETEiJ_G0015857) #24	Slc30a1 (MGP_SPRETEiJ_G0015856) #25	Nek2 (MGP_SPRETEiJ_G0015855) #26	Lpgat1 (MGP_SPRETEiJ_G0015854) #27	Ints7 (MGP_SPRETEiJ_G0015853) #28	Dtl (MGP_SPRETEiJ_G0015852) #29	Ppp2r5a (MGP_SPRETEiJ_G0015851) #30	Pacc1 (MGP_SPRETEiJ_G0015850) #31	Nenf (MGP_SPRETEiJ_G0015849) #32	Atf3 (MGP_SPRETEiJ_G0015848) #33	Garin4 (MGP_SPRETEiJ_G0015847) #34	Batf3 (MGP_SPRETEiJ_G0015846) #35	Nsl1 (MGP_SPRETEiJ_G0015845) #36	Tatdn3 (MGP_SPRETEiJ_G0015844) #37
Steppe mouse	MODERN SPECIES	2667														ENSMSIG00000027154	Kcnh1 (ENSMSIG00000027136) #21	Rcor3 (ENSMSIG00000026869) #22	Traf5 (ENSMSIG00000026837) #23	ENSMSIG00000026824	Rd3 (ENSMSIG00000026807) #24	ENSMSIG00000026792	Slc30a1 (ENSMSIG00000026786) #25	ENSMSIG00000026779	Nek2 (ENSMSIG00000026753) #26	ENSMSIG00000026735 #27
Mouse	MODERN SPECIES		Cd46 (ENSMUSG00000016493) #7	Cd34 (ENSMUSG00000016494) #8	Plxna2 (ENSMUSG00000026640) #9	Camk1g (ENSMUSG00000016179) #10	G0s2 (ENSMUSG00000009633) #11	Hsd11b1 (ENSMUSG00000016194) #12	Lamb3 (ENSMUSG00000026639) #13	Traf3ip3 (ENSMUSG00000037318) #14	A130010J15Rik (ENSMUSG00000079144) #15	Irf6 (ENSMUSG00000026638) #16	Utp25 (ENSMUSG00000016181) #17	Syt14 (ENSMUSG00000016200) #18	Sertad4 (ENSMUSG00000016262) #19	Hhat (ENSMUSG00000037375) #20	Kcnh1 (ENSMUSG00000058248) #21	Rcor3 (ENSMUSG00000037395) #22	Traf5 (ENSMUSG00000026637) #23	Rd3 (ENSMUSG00000049353) #24	Slc30a1 (ENSMUSG00000037434) #25	Nek2 (ENSMUSG00000026622) #26	Lpgat1 (ENSMUSG00000026623) #27	Ints7 (ENSMUSG00000037461) #28	Dtl (ENSMUSG00000037474) #29	Ppp2r5a (ENSMUSG00000026626) #30	Pacc1 (ENSMUSG00000026627) #31	Nenf (ENSMUSG00000037499) #32	Atf3 (ENSMUSG00000026628) #33	Garin4 (ENSMUSG00000091017) #34	Batf3 (ENSMUSG00000026630) #35	Nsl1 (ENSMUSG00000062510) #36	Tatdn3 (ENSMUSG00000026632) #37
Ryukyu mouse	MODERN SPECIES		Cd46 (MGP_CAROLIEiJ_G0015074) #7	Cd34 (MGP_CAROLIEiJ_G0015073) #8	Plxna2 (MGP_CAROLIEiJ_G0015072) #9	Camk1g (MGP_CAROLIEiJ_G0015071) #10	G0s2 (MGP_CAROLIEiJ_G0015070) #11	Hsd11b1 (MGP_CAROLIEiJ_G0015069) #12	Lamb3 (MGP_CAROLIEiJ_G0015068) #13	Traf3ip3 (MGP_CAROLIEiJ_G0015067) #14	A130010J15Rik (MGP_CAROLIEiJ_G0015066) #15	Irf6 (MGP_CAROLIEiJ_G0015065) #16	Utp25 (MGP_CAROLIEiJ_G0015064) #17	MGP_CAROLIEiJ_G0015063 #18	Sertad4 (MGP_CAROLIEiJ_G0015062) #19	Hhat (MGP_CAROLIEiJ_G0015061) #20	Kcnh1 (MGP_CAROLIEiJ_G0015060) #21	Rcor3 (MGP_CAROLIEiJ_G0015059) #22	MGP_CAROLIEiJ_G0015058 #23	Rd3 (MGP_CAROLIEiJ_G0015057) #24	Slc30a1 (MGP_CAROLIEiJ_G0015056) #25	Nek2 (MGP_CAROLIEiJ_G0015055) #26	Lpgat1 (MGP_CAROLIEiJ_G0015054) #27	Ints7 (MGP_CAROLIEiJ_G0015053) #28	Dtl (MGP_CAROLIEiJ_G0015052) #29	Ppp2r5a (MGP_CAROLIEiJ_G0015051) #30	Pacc1 (MGP_CAROLIEiJ_G0015050) #31	Nenf (MGP_CAROLIEiJ_G0015049) #32	Atf3 (MGP_CAROLIEiJ_G0015048) #33	Garin4 (MGP_CAROLIEiJ_G0015047) #34	Batf3 (MGP_CAROLIEiJ_G0015046) #35	Nsl1 (MGP_CAROLIEiJ_G0015045) #36	Tatdn3 (MGP_CAROLIEiJ_G0015044) #37
Shrew mouse	MODERN SPECIES	18	Cd46 (MGP_PahariEiJ_G0028306) #7	Cd34 (MGP_PahariEiJ_G0028305) #8	Plxna2 (MGP_PahariEiJ_G0028304) #9	Camk1g (MGP_PahariEiJ_G0028303) #10	G0s2 (MGP_PahariEiJ_G0028302) #11	Hsd11b1 (MGP_PahariEiJ_G0028301) #12	MGP_PahariEiJ_G0028300 #13	Traf3ip3 (MGP_PahariEiJ_G0028299) #14	A130010J15Rik (MGP_PahariEiJ_G0028298) #15	Irf6 (MGP_PahariEiJ_G0028297) #16	Utp25 (MGP_PahariEiJ_G0028296) #17	MGP_PahariEiJ_G0028295 #18	Sertad4 (MGP_PahariEiJ_G0028294) #19	Hhat (MGP_PahariEiJ_G0028293) #20	Kcnh1 (MGP_PahariEiJ_G0028292) #21	Rcor3 (MGP_PahariEiJ_G0028291) #22	MGP_PahariEiJ_G0028290 #23	Rd3 (MGP_PahariEiJ_G0028289) #24	Slc30a1 (MGP_PahariEiJ_G0028288) #25	Nek2 (MGP_PahariEiJ_G0028287) #26	Lpgat1 (MGP_PahariEiJ_G0028286) #27	Ints7 (MGP_PahariEiJ_G0028285) #28	Dtl (MGP_PahariEiJ_G0028284) #29	Ppp2r5a (MGP_PahariEiJ_G0028283) #30	Pacc1 (MGP_PahariEiJ_G0028282) #31	Nenf (MGP_PahariEiJ_G0028281) #32	Atf3 (MGP_PahariEiJ_G0028280) #33	Garin4 (MGP_PahariEiJ_G0028279) #34	Batf3 (MGP_PahariEiJ_G0028278) #35	Nsl1 (MGP_PahariEiJ_G0028277) #36	MGP_PahariEiJ_G0028276 #37
Rat	MODERN SPECIES	4	Cd46 (ENSRNOG00000008193)	Cd34 (ENSRNOG00000045558) #8	Plxna2 (ENSRNOG00000007324) #9	Camk1g (ENSRNOG00000006470) #10	Lamb3 (ENSRNOG00000006025) #13	G0s2 (ENSRNOG00000006019) #11	Hsd11b1 (ENSRNOG00000005861)	Traf3ip3 (ENSRNOG00000005565) #14	LOC100125367 (ENSRNOG00000005558) #15	Irf6 (ENSRNOG00000005082) #16	Utp25 (ENSRNOG00000004789) #17	Syt14 (ENSRNOG00000046139) #18	Sertad4 (ENSRNOG00000060773) #19	Hhat (ENSRNOG00000003925) #20	Kcnh1 (ENSRNOG00000003841) #21	Rcor3 (ENSRNOG00000046445) #22	Traf5 (ENSRNOG00000047957) #23	Rd3 (ENSRNOG00000050766) #24	Slc30a1 (ENSRNOG00000004749) #25	AABR07022168.1 (ENSRNOG00000059863)	Nek2l1 (ENSRNOG00000004487) #26	Lpgat1 (ENSRNOG00000004402) #27	RGD1560186 (ENSRNOG00000031098)	Ints7 (ENSRNOG00000004263) #28	Dtl (ENSRNOG00000004195) #29	Ppp2r5a (ENSRNOG00000000068) #30	Pacc1 (ENSRNOG00000003915) #31	Nenf (ENSRNOG00000003833) #32	Atf3 (ENSRNOG00000003745) #33	Garin4 (ENSRNOG00000029371) #34	Batf3 (ENSRNOG00000003716) #35