Neopterygii	ANCESTRAL SPECIES	197											ENSGT00930000151050	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907 #23	ENSGT00620000089226	ENSGT00940000154394.b.a.b #24	ENSGT00940000154394.b.a.a.a.a.b ##25	ENSGT00940000154842.a.a	ENSGT00950000182888.b	ENSGT00940000166999.A	ENSGT01010000223148	ENSGT00910000144273	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158795
Osteoglossocephalai	ANCESTRAL SPECIES	49	ENSGT00940000156611	ENSGT00390000000642	ENSGT00940000163762.b	ENSGT00940000155945.i.a	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000156261 #11	ENSGT00940000158540 #10	ENSGT00940000159990 #9	ENSGT00940000157419 #8	ENSGT00940000165669	ENSGT00390000009566	ENSGT00940000153772.B	ENSGT00940000158501	ENSGT00390000016384	ENSGT00940000166116	ENSGT00940000172233	ENSGT00940000157194	ENSGT00940000157936
Clupeocephala	ANCESTRAL SPECIES	195	ENSGT00940000164541	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000156261 #11	ENSGT00940000158540 #10	ENSGT00940000159990 #9	ENSGT00940000157419 #8	ENSGT00940000153391.c.b.a.j.b #7	ENSGT00940000165669	ENSGT00390000009566	ENSGT00940000158501.d.a	ENSGT00390000016384.l.a	ENSGT00940000166116
Euteleosteomorpha	ANCESTRAL SPECIES	293							ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00930000151044 #19	ENSGT00940000170916	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00940000165492.a.a
Protacanthopterygii	ANCESTRAL SPECIES	17	ENSGT00940000155373 #13	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.e.b ##25	ENSGT00940000165492.b	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00940000165492.a.a	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00390000020276 #28	ENSGT00390000008042.B.o	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.p	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00940000154645.B #31	ENSGT00940000164697.b	ENSGT00940000157194	ENSGT00390000016384.l.b
Northern pike	MODERN SPECIES	13	nr5a1b (ENSELUG00000019192) #7	psmb7 (ENSELUG00000019284) #8	NEK6 (ENSELUG00000019344) #9	LHX2 (ENSELUG00000019408) #10	DENND1A (ENSELUG00000000844) #11	CRB2 (ENSELUG00000019522) #12	cdk9 (ENSELUG00000019692) #13	crata (ENSELUG00000019745) #14	ptpa (ENSELUG00000000869) #15	ier5l (ENSELUG00000019814) #16	ENSELUG00000034166 #17	ntmt1 (ENSELUG00000019833) #18	lrsam1 (ENSELUG00000019893) #19	rpl12 (ENSELUG00000019938) #20	pole3 (ENSELUG00000001285) #21	ccn1l1 (ENSELUG00000019976) #22	lmo4a (ENSELUG00000019991) #23	TUBB4B (ENSELUG00000020007) #24	ENSELUG00000030475 #25	ENSELUG00000024741 #26	ENSELUG00000020184 #27	ENSELUG00000027081 #28	fpgs (ENSELUG00000020278) #29	gpr107 (ENSELUG00000020299) #30	ncs1a (ENSELUG00000032344) #31	ENSELUG00000033861 #32	ENSELUG00000020408 #33	ENSELUG00000020415 #34	ENSELUG00000020421 #35	ENSELUG00000020427 #36	ENSELUG00000020436 #37
Salmoninae	ANCESTRAL SPECIES	134	ENSGT00940000159990 #9	ENSGT00940000158540.y.a #10	ENSGT00940000156261.db.a #11	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000160615.a.b	ENSGT00940000155373 #13	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500.k #15	ENSGT00900000141021.b.a.d.e #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286.d	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00940000165492.a.a	ENSGT00390000004692.d.a.n	ENSGT00980000199397.a	ENSGT00940000154394.b.a.b.q #24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00390000020276.lb #28	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00940000167171 #37	ENSGT00390000016384.l.a
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00940000159990 #9	ENSGT00940000158540.y.a #10	ENSGT00940000156261.db.a #11	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000160615.a.b	ENSGT00940000155373 #13	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500.k #15	ENSGT00900000141021.b.a.d.e #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286.d	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00940000154394.b.a.b.q #24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00390000020276.lb #28	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00940000167171 #37	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d
Salmo	ANCESTRAL SPECIES		ENSGT00940000159990 #9	ENSGT00940000158540.y.a #10	ENSGT00940000156261.db.a #11	ENSGT00940000160615.a.b	ENSGT00940000155373 #13	ENSGT00940000167707	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500.k #15	ENSGT00900000141021.b.a.d.e #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286.d	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00390000020276.lb #28	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT01100000263505.b.b.a.b.a.a.a.b.a	ENSGT01000000220495
Atlantic salmon	MODERN SPECIES		NEK6 (ENSSSAG00000111428) #9	LHX2 (ENSSSAG00000069676) #10	crb2a (ENSSSAG00000070752)	DENND1A (ENSSSAG00000070774) #11	cdk9 (ENSSSAG00000070738) #13	ENSSSAG00000070732	crata (ENSSSAG00000067447) #14	ptpa (ENSSSAG00000066908) #15	IER5 (ENSSSAG00000066882) #16	ntmt1 (ENSSSAG00000066881) #18	ndor1 (ENSSSAG00000066849)	ENSSSAG00000066833	rpl12 (ENSSSAG00000066776) #20	lrsam1 (ENSSSAG00000066808) #19	pole3 (ENSSSAG00000066768) #21	ccn1l1 (ENSSSAG00000116908) #22	lmo4a (ENSSSAG00000066759) #23	zgc:55461 (ENSSSAG00000101622) ##25	ENSSSAG00000066731 #28	ENSSSAG00000066321 #29	ENSSSAG00000066294 #30	ncs1a (ENSSSAG00000066286)	ENSSSAG00000094965 #37	RPL35 (ENSSSAG00000066273)	arpc5l (ENSSSAG00000066267)	SCAI (ENSSSAG00000117569)	ppp6c (ENSSSAG00000119839)	ENSSSAG00000065463	ENSSSAG00000065449	ENSSSAG00000064650	ENSSSAG00000114149
River trout	MODERN SPECIES	15	LHX2 (ENSSTUG00000017212) #10	DENND1A (ENSSTUG00000017039) #11	ENSSTUG00000016961	cdk9 (ENSSTUG00000016931) #13	ENSSTUG00000016927	crata (ENSSTUG00000014589) #14	ptpa (ENSSTUG00000013797) #15	ier5l (ENSSTUG00000013752) #16	ntmt1 (ENSSTUG00000013744) #18	ndor1 (ENSSTUG00000013700)	ENSSTUG00000013659	lrsam1 (ENSSTUG00000013165) #19	ENSSTUG00000013137	rpl12 (ENSSTUG00000013074) #20	pole3 (ENSSTUG00000013038) #21	ccn1l1 (ENSSTUG00000013028) #22	ENSSTUG00000013026	lmo4a (ENSSTUG00000013015) #23	ENSSTUG00000012998	ENSSTUG00000012981	ENSSTUG00000012952 ##25	ENSSTUG00000012902	fpgs (ENSSTUG00000010958) #29	gpr107 (ENSSTUG00000010800) #30	ENSSTUG00000010777	ENSSTUG00000010763	rpl35 (ENSSTUG00000010753)	arpc5lb (ENSSTUG00000010719)	SCAI (ENSSTUG00000010309)	ppp6c (ENSSTUG00000010278)	p2rx4a (ENSSTUG00000010155)
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00940000157419.x #8	ENSGT00940000159990.d #9	ENSGT00940000158540.y.a #10	ENSGT00940000156261.db.a #11	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000155373 #13	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500.k #15	ENSGT00900000141021.b.a.d.e #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286.d	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000165492.a.a	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00940000167171 #37	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00940000157419.x #8	ENSGT00940000159990.d #9	ENSGT00940000158540.y.a #10	ENSGT00940000156261.db.a #11	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000155373 #13	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500.k #15	ENSGT00900000141021.b.a.d.e #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00530000064286.d	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000165492.a.a	ENSGT00390000016526 #29	ENSGT00940000160451 #30	ENSGT00940000167171 #37	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c
Coho salmon	MODERN SPECIES	15	NEK6 (ENSOKIG00005039628) #9	LHX2 (ENSOKIG00005039581) #10	DENND1A (ENSOKIG00005038947) #11	ENSOKIG00005038911	crb2a (ENSOKIG00005038790)	cdk9 (ENSOKIG00005038769) #13	crata (ENSOKIG00005036280) #14	ptpa (ENSOKIG00005037321) #15	ier5l (ENSOKIG00005037286) #16	ntmt1 (ENSOKIG00005037263) #18	ndor1 (ENSOKIG00005037020)	ENSOKIG00005036987	lrsam1 (ENSOKIG00005036797) #19	rpl12 (ENSOKIG00005036665) #20	pole3 (ENSOKIG00005036619) #21	ccn1l1 (ENSOKIG00005036602) #22	lmo4a (ENSOKIG00005036570) #23	ENSOKIG00005036524 ##25	ENSOKIG00005036469	fpgs (ENSOKIG00005035313) #29	gpr107 (ENSOKIG00005035007) #30	ENSOKIG00005034963	ENSOKIG00005034941 #37	RPL35 (ENSOKIG00005034926)	arpc5lb (ENSOKIG00005034885)	SCAI (ENSOKIG00005034777)	ppp6c (ENSOKIG00005034752)	ENSOKIG00005034668	PTGES2 (ENSOKIG00005034633)	zer1 (ENSOKIG00005034579)	TBC1D13 (ENSOKIG00005034529)
Chinook salmon	MODERN SPECIES	12	psmb7 (ENSOTSG00005047328) #8	NEK6 (ENSOTSG00005047329) #9	LHX2 (ENSOTSG00005047331) #10	DENND1A (ENSOTSG00005047332) #11	CRB2 (ENSOTSG00005047456) #12	crata (ENSOTSG00005047465) #14	ptpa (ENSOTSG00005047657) #15	ier5l (ENSOTSG00005047663) #16	ntmt1 (ENSOTSG00005047665) #18	ndor1 (ENSOTSG00005047666)	ENSOTSG00005047669	lrsam1 (ENSOTSG00005047670) #19	rpl12 (ENSOTSG00005047672) #20	pole3 (ENSOTSG00005047680) #21	ENSOTSG00005047681	ccn1l1 (ENSOTSG00005047682) #22	lmo4a (ENSOTSG00005047683) #23	ENSOTSG00005047684	TUBB4B (ENSOTSG00005047686) #24	ENSOTSG00005047687	fpgs (ENSOTSG00005047697) #29	gpr107 (ENSOTSG00005047719) #30	ENSOTSG00005047726	ENSOTSG00005047730	rpl35 (ENSOTSG00005047731)	arpc5lb (ENSOTSG00005047733)	SCAI (ENSOTSG00005047741)	ppp6c (ENSOTSG00005047746)	p2rx4a (ENSOTSG00005047749)	ENSOTSG00005047750	PTGES2 (ENSOTSG00005047751)
Rainbow trout	MODERN SPECIES	26	DENND1A (ENSOMYG00000041827) #11	ENSOMYG00000072052	crb2a (ENSOMYG00000042025)	ENSOMYG00000042044 #13	crata (ENSOMYG00000042148) #14	ptpa (ENSOMYG00000042435) #15	ENSOMYG00000060240	ier5l (ENSOMYG00000042486) #16	ENSOMYG00000060356	ntmt1 (ENSOMYG00000042491) #18	ndor1 (ENSOMYG00000042500)	ENSOMYG00000042517	lrsam1 (ENSOMYG00000042530) #19	rpl12 (ENSOMYG00000042549) #20	pole3 (ENSOMYG00000042572) #21	ccn1l1 (ENSOMYG00000042576) #22	lmo4a (ENSOMYG00000042581) #23	ENSOMYG00000042585	ENSOMYG00000042589	ENSOMYG00000042662 #29	ENSOMYG00000042954 #30	ENSOMYG00000042982	ENSOMYG00000077280	ENSOMYG00000042991 #37	ENSOMYG00000068299	RPL35 (ENSOMYG00000042997)	arpc5l (ENSOMYG00000043006)	SCAI (ENSOMYG00000043028)	ppp6c (ENSOMYG00000043082)	ENSOMYG00000043101	ENSOMYG00000043121
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1573							ENSHHUG00000050502	ntmt1 (ENSHHUG00000050489) #18	ndor1 (ENSHHUG00000050475)	ENSHHUG00000050471	ENSHHUG00000050466	lrsam1 (ENSHHUG00000050460) #19	rpl12 (ENSHHUG00000050429) #20	pole3 (ENSHHUG00000050421) #21	ENSHHUG00000050420	ccn1l1 (ENSHHUG00000050415) #22	lmo4a (ENSHHUG00000050413) #23	zgc:55461 (ENSHHUG00000050408) ##25	ENSHHUG00000050390	fpgs (ENSHHUG00000050379) #29	gpr107 (ENSHHUG00000050371) #30	ENSHHUG00000050325	ENSHHUG00000050321
Huchen	MODERN SPECIES	222										ENSHHUG00000030785 #11	DENND1A (ENSHHUG00000030793) #11	ENSHHUG00000030815	ENSHHUG00000030817 #15	ier5l (ENSHHUG00000030819) #16	ENSHHUG00000030821	ccn1l1 (ENSHHUG00000030825) #22	lmo4a (ENSHHUG00000030835) #23	arpc5lb (ENSHHUG00000030847)	ppp6c (ENSHHUG00000030893)	ENSHHUG00000030902
Otomorpha	ANCESTRAL SPECIES	193	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000154079.b.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00390000016526 #29	ENSGT00940000155373 #13	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000156261 #11	ENSGT00940000158540 #10	ENSGT00940000159990 #9	ENSGT00940000157419 #8	ENSGT00940000153391.c.b.a.j.b #7
Clupeiformes	ANCESTRAL SPECIES	105	ENSGT00940000160918	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000154079.b.b	ENSGT00940000155946.c.b	ENSGT00930000151016	ENSGT00940000154645.B.e #31	ENSGT00940000160451 #30	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.d.a #16	ENSGT00390000008371.b #18	ENSGT00930000151050	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00390000020276.mb.b #28	ENSGT00390000016526 #29	ENSGT00940000155373 #13	ENSGT00950000183101.a.b.b.a.b #12	ENSGT00940000156261 #11	ENSGT00940000158540 #10	ENSGT00940000159990 #9	ENSGT00940000157419 #8	ENSGT00940000153391.c.b.a.j.b #7	ENSGT00940000157936	ENSGT00940000157194.d	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000026083	zbtb43 (ENSCHAG00000002356)	RALGPS1 (ENSCHAG00000002473)	angptl2a (ENSCHAG00000003585)	fbxw2 (ENSCHAG00000003600)	ncs1a (ENSCHAG00000003645) #31	gpr107 (ENSCHAG00000003724) #30	crata (ENSCHAG00000003848) #14	ptpa (ENSCHAG00000004320) #15	ier5l (ENSCHAG00000004832) #16	ntmt1 (ENSCHAG00000004859) #18	ndor1 (ENSCHAG00000004879)	lrsam1 (ENSCHAG00000005132) #19	rpl12 (ENSCHAG00000005485) #20	pole3 (ENSCHAG00000005619) #21	ccn1l1 (ENSCHAG00000005656) #22	lmo4a (ENSCHAG00000005730) #23	ENSCHAG00000005749 #24	ENSCHAG00000005894 #28	fpgs (ENSCHAG00000006452) #29	cdk9 (ENSCHAG00000007237) #13	CRB2 (ENSCHAG00000007287) #12	DENND1A (ENSCHAG00000007433) #11	LHX2 (ENSCHAG00000009120) #10	NEK6 (ENSCHAG00000009167) #9	psmb7 (ENSCHAG00000009649) #8	nr5a1b (ENSCHAG00000009743) #7	NR6A1 (ENSCHAG00000009757)	OLFML2A (ENSCHAG00000009877)	rpl35 (ENSCHAG00000009913)	arpc5lb (ENSCHAG00000009956)
Denticle herring	MODERN SPECIES	13	zbtb43 (ENSDCDG00000027184)	RALGPS1 (ENSDCDG00000027193)	angptl2a (ENSDCDG00000027249)	fbxw2 (ENSDCDG00000027250)	ncs1a (ENSDCDG00000027251) #31	gpr107 (ENSDCDG00000027253) #30	crata (ENSDCDG00000027328) #14	ptpa (ENSDCDG00000027993) #15	ier5l (ENSDCDG00000028362) #16	ntmt1 (ENSDCDG00000028367) #18	ndor1 (ENSDCDG00000028380)	lrsam1 (ENSDCDG00000028407) #19	rpl12 (ENSDCDG00000028508) #20	pole3 (ENSDCDG00000028534) #21	ENSDCDG00000028537	ccn1l1 (ENSDCDG00000028541) #22	lmo4a (ENSDCDG00000028675) #23	ENSDCDG00000028678 #25	ENSDCDG00000028697 #28	fpgs (ENSDCDG00000028799) #29	cdk9 (ENSDCDG00000029739) #13	CRB2 (ENSDCDG00000029740) #12	DENND1A (ENSDCDG00000029744) #11	LHX2 (ENSDCDG00000013115) #10	NEK6 (ENSDCDG00000013125) #9	psmb7 (ENSDCDG00000013357) #8	nr5a1b (ENSDCDG00000013415) #7	NR6A1 (ENSDCDG00000013420)	OLFML2A (ENSDCDG00000013436)	ENSDCDG00000013448	rpl35 (ENSDCDG00000013468)
Otophysi	ANCESTRAL SPECIES	100	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT00930000151050	ENSGT00390000008371.b #18	ENSGT00900000141021.b.a.d #16	ENSGT00390000011500 #15	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00620000089226	ENSGT00940000164907.b.a ##23	ENSGT00940000155151.a.a.a ##22	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b ##25	ENSGT00390000020276.mb.b #28	ENSGT00940000165492.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a	ENSGT00940000154886.a.b	ENSGT00940000158865	ENSGT00940000158797	ENSGT00390000006980	ENSGT00530000064194	ENSGT00940000153294	ENSGT00390000004339	ENSGT00390000009787	ENSGT00940000158829
Characiphysae	ANCESTRAL SPECIES	142	ENSGT00940000155567	ENSGT00940000159777	ENSGT00390000001195.a.b	ENSGT00930000151016	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT00930000151050	ENSGT00390000008371.b #18	ENSGT00900000141021.b.a.d #16	ENSGT00390000011500 #15	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.b.a.b ##25	ENSGT00390000020276.mb.a #28	ENSGT00390000020276.mb.b #28	ENSGT00940000165492.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a	ENSGT00940000154886.a.b	ENSGT00940000158865	ENSGT00940000158797	ENSGT00390000006980	ENSGT00530000064194	ENSGT00940000153294	ENSGT00390000004339	ENSGT00390000009787
Channel catfish	MODERN SPECIES	20	GAS1 (ENSIPUG00000006779)	fbxw2 (ENSIPUG00000006792)	ENSIPUG00000006858	ncs1 (ENSIPUG00000006898) #31	gpr107 (ENSIPUG00000006957) #30	ndor1 (ENSIPUG00000006992)	ENSIPUG00000007066	ntmt1 (ENSIPUG00000007083) #18	ier5l (ENSIPUG00000007148) #16	ptpa (ENSIPUG00000007164) #15	crat (ENSIPUG00000007250) #14	ENSIPUG00000007367	Lrsam1 (ENSIPUG00000007487) #19	rpl12 (ENSIPUG00000007575) #20	pole3 (ENSIPUG00000007668) #21	ccn1l1 (ENSIPUG00000007680) #22	lmo4a (ENSIPUG00000007705) #23	ENSIPUG00000007738 ##25	ENSIPUG00000007750	ENSIPUG00000007759	NPFFR2 (ENSIPUG00000007782)	ENSIPUG00000007855	ENSIPUG00000007883	prkaa1 (ENSIPUG00000007912)	kyat1 (ENSIPUG00000007957)	kyat1 (ENSIPUG00000007984)	kyat1 (ENSIPUG00000008008)	surf6 (ENSIPUG00000008066)	surf1 (ENSIPUG00000008089)	rpl7a (ENSIPUG00000008146)	med22 (ENSIPUG00000008190)
Characiphysae_b	ANCESTRAL SPECIES	43	ENSGT00940000155567	ENSGT00940000159777	ENSGT00390000001195.a.b	ENSGT00930000151016	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT00930000151050	ENSGT00390000008371.b #18	ENSGT00900000141021.b.a.d #16	ENSGT00390000011500 #15	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.b.a.b ##25	ENSGT00390000020276.mb.a #28	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a	ENSGT00940000154886.a.b	ENSGT00940000158865	ENSGT00940000158797	ENSGT00390000006980	ENSGT00530000064194	ENSGT00940000153294	ENSGT00390000004339	ENSGT00390000009787	ENSGT00940000158829	ENSGT00390000011980.b.b
Electric eel	MODERN SPECIES	29	gabarapa (ENSEEEG00000016196)	gps2 (ENSEEEG00000016194)	tp53 (ENSEEEG00000016191)	ENSEEEG00000016190	capga (ENSEEEG00000016178)	ncs1a (ENSEEEG00000016162) #31	gpr107 (ENSEEEG00000016155) #30	ndor1 (ENSEEEG00000016145)	ntmt1 (ENSEEEG00000016143) #18	ier5l (ENSEEEG00000016141) #16	ptpa (ENSEEEG00000015855) #15	crata (ENSEEEG00000015351) #14	lrsam1 (ENSEEEG00000015206) #19	rpl12 (ENSEEEG00000015168) #20	pole3 (ENSEEEG00000015165) #21	ccn1l1 (ENSEEEG00000015155) #22	lmo4a (ENSEEEG00000015152) #23	ENSEEEG00000015143 ##25	ENSEEEG00000015134 #28	NPFFR2 (ENSEEEG00000015048)	ENSEEEG00000015040	ENSEEEG00000015021	prkaa1 (ENSEEEG00000015011)	kyat1 (ENSEEEG00000014998)	surf6 (ENSEEEG00000014997)	surf1 (ENSEEEG00000014996)	RPL7A (ENSEEEG00000014979)	med22 (ENSEEEG00000014972)	zgc:103692 (ENSEEEG00000014971)	usp20 (ENSEEEG00000014969)	ptges (ENSEEEG00000014967)
Characoidei	ANCESTRAL SPECIES	69	ENSGT00940000155567	ENSGT00940000159777	ENSGT00390000001195.a.b	ENSGT00930000151016	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT00930000151050	ENSGT00390000008371.b #18	ENSGT00900000141021.b.a.d #16	ENSGT00390000011500 #15	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a	ENSGT00940000154886.a.b	ENSGT00940000158865	ENSGT00940000158797	ENSGT00390000006980	ENSGT00530000064194	ENSGT00940000155193	ENSGT00390000004339	ENSGT00390000009787	ENSGT00940000158829	ENSGT00390000011980.b.b	ENSGT00390000016067	ENSGT01010000222313.A.b.b.b.a
Red-bellied piranha	MODERN SPECIES	2	ENSPNAG00000023180	c9 (ENSPNAG00000023200)	gas1b (ENSPNAG00000023216)	fbxw2 (ENSPNAG00000023239)	ncs1a (ENSPNAG00000023289) #31	gpr107 (ENSPNAG00000023306) #30	ndor1 (ENSPNAG00000023402)	ntmt1 (ENSPNAG00000023338) #18	ier5l (ENSPNAG00000023424) #16	ptpa (ENSPNAG00000023503) #15	crata (ENSPNAG00000023586) #14	ENSPNAG00000023633	lrsam1 (ENSPNAG00000023778) #19	rpl12 (ENSPNAG00000023834) #20	pole3 (ENSPNAG00000023860) #21	ccn1l1 (ENSPNAG00000023906) #22	lmo4a (ENSPNAG00000023937) #23	zgc:55461 (ENSPNAG00000023984) ##25	ENSPNAG00000024010	ENSPNAG00000024069 #28	NPFFR2 (ENSPNAG00000024089)
Mexicana tetra	MODERN SPECIES	1329																ccn1l1 (ENSAMXG00000012731) #22	lmo4a (ENSAMXG00000035221) #23	zgc:55461 (ENSAMXG00000033008) ##25	ENSAMXG00000041464	ENSAMXG00000012686	ENSAMXG00000041483 #28	ENSAMXG00000033350 #28	ENSAMXG00000030558	ENSAMXG00000037785	ENSAMXG00000040666	ENSAMXG00000041783
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000154645.B #31	ENSGT00940000160451 #30	ENSGT00930000151050	ENSGT00390000008371.b #18	ENSGT00900000141021.b.a.d #16	ENSGT00390000011500 #15	ENSGT01060000248556.A.a.a.a.b.a #14	ENSGT00940000154394.b.a.a.a.a.a.b #25	ENSGT00620000089226	ENSGT00940000164907.b.a ##23	ENSGT00940000155151.a.a.a ##22	ENSGT00530000064286	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b.c.b ##25	ENSGT00940000154394.b.a.a.a.b.a.b ##25	ENSGT00390000020276.mb.a #28	ENSGT00390000020276.mb.b #28	ENSGT00940000165492.a.a	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a	ENSGT00940000154886.a.b	ENSGT00940000158865	ENSGT00950000182857.a.b	ENSGT00940000158797	ENSGT00390000006980	ENSGT00530000064194	ENSGT00940000153294
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES		ENSGT00940000164626.b.b.c.a.f	ENSGT00940000155882.a.b.b.e	ENSGT00940000155567.w.a	ENSGT00390000001195.a.b.a	ENSGT00930000151016.y	ENSGT00940000154645.B.i.b #31	ENSGT00940000160451.b #30	ENSGT00930000151050.b	ENSGT00390000008371.b.c #18	ENSGT00900000141021.b.a.d.c #16	ENSGT00390000011500.f #15	ENSGT01060000248556.A.a.a.a.b.a.c #14	ENSGT00930000151044.a #19	ENSGT00390000006922.d #20	ENSGT00940000164386.f #21	ENSGT00940000155151.a.a.b.a #22	ENSGT00940000164907.b.b.b.b #23	ENSGT00940000154394.b.a.a.b.b.c.b ##25	ENSGT00940000165492.a.a.c.a	ENSGT00940000154821.a.a.a	ENSGT00940000154886.a.b.k	ENSGT00940000158865.o	ENSGT00950000182857.a.b	ENSGT00940000158797.v	ENSGT00390000006980.c	ENSGT00530000064194.g	ENSGT00940000153294.h	ENSGT00390000004339.s	ENSGT00390000009787.cb	ENSGT00940000158829.a	ENSGT00390000011980.b.b.a
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000164626.b.b.c.a.f	ENSGT00940000155882.a.b.b.e	ENSGT00940000155567.w.a	ENSGT00390000001195.a.b.a	ENSGT00930000151016.y	ENSGT00940000163010.u.b	ENSGT00940000160451.b #30	ENSGT00930000151050.b	ENSGT00390000008371.b.c #18	ENSGT00900000141021.b.a.d.c #16	ENSGT00390000011500.f #15	ENSGT01060000248556.A.a.a.a.b.a.c #14	ENSGT00930000151044.a #19	ENSGT00390000006922.d #20	ENSGT00940000164386.f #21	ENSGT00940000155151.a.a.b.a #22	ENSGT00940000164907.b.b.b.b #23	ENSGT00940000154394.b.a.a.b.b.c.a ##25	ENSGT00940000165492.a.a.c.a	ENSGT00940000154821.a.a.a	ENSGT00940000154886.a.b.k	ENSGT00940000158865.o	ENSGT00950000182857.a.b	ENSGT00940000158797.v	ENSGT00390000006980.c	ENSGT00530000064194.g	ENSGT00390000004339.s	ENSGT00390000009787.cb	ENSGT00940000158829.a	ENSGT00390000011980.b.b.a	ENSGT00940000159362.g
Common carp reference	MODERN SPECIES	7	tescb (ENSCCRG00000071303)	m17 (ENSCCRG00000013882)	ENSCCRG00000013876	ENSCCRG00000072823	ENSCCRG00000056047	dab2 (ENSCCRG00000026586)	fbxw2 (ENSCCRG00000053560)	ENSCCRG00000071330	gpr107 (ENSCCRG00000043862) #30	ntmt1 (ENSCCRG00000043894) #18	ptpa (ENSCCRG00000031445) #15	crata (ENSCCRG00000031927) #14	lrsam1 (ENSCCRG00000034301) #19	rpl12 (ENSCCRG00000071587) #20	pole3 (ENSCCRG00000080860) #21	ccn1l1 (ENSCCRG00000035740) #22	lmo4a (ENSCCRG00000075174) #23	ENSCCRG00000054308 ##25	ENSCCRG00000031181	ENSCCRG00000052661	ENSCCRG00000055438	ENSCCRG00000031194	prkaa1 (ENSCCRG00000078593)	kyat1 (ENSCCRG00000062125)	RPL7A (ENSCCRG00000034022)	surf1 (ENSCCRG00000081884)	med22 (ENSCCRG00000074301)	zgc:103692 (ENSCCRG00000034113)	usp20 (ENSCCRG00000033705)	ptges (ENSCCRG00000060524)	garnl3 (ENSCCRG00000044660)
Golden-line barbel	MODERN SPECIES	91	ENSSGRG00000015499	hspb15 (ENSSGRG00000015504)	dab2 (ENSSGRG00000015508)	ENSSGRG00000015528	gas1b (ENSSGRG00000015530)	fbxw2 (ENSSGRG00000015532)	gpr107 (ENSSGRG00000015537) #30	ndor1 (ENSSGRG00000015544)	ntmt1 (ENSSGRG00000015561) #18	ier5l (ENSSGRG00000015565) #16	ptpa (ENSSGRG00000015567) #15	crata (ENSSGRG00000015586) #14	lrsam1 (ENSSGRG00000016091) #19	rpl12 (ENSSGRG00000016092) #20	pole3 (ENSSGRG00000016141) #21	ccn1l1 (ENSSGRG00000016144) #22	lmo4a (ENSSGRG00000016145) #23	zgc:55461 (ENSSGRG00000016148) ##25	ENSSGRG00000016154	ENSSGRG00000016195	ENSSGRG00000016196	prkaa1 (ENSSGRG00000016198)	ifitm1 (ENSSGRG00000016208)	kyat1 (ENSSGRG00000016230)	surf6 (ENSSGRG00000016898)	surf1 (ENSSGRG00000016901)	ENSSGRG00000016903	med22 (ENSSGRG00000016907)	zgc:103692 (ENSSGRG00000016908)	usp20 (ENSSGRG00000016911)	ptges (ENSSGRG00000017233)
Goldfish	MODERN SPECIES	44	ENSCARG00000013314	hspb15 (ENSCARG00000014158)	dab2 (ENSCARG00000014173)	gas1b (ENSCARG00000014190)	fbxw2 (ENSCARG00000014196)	ncs1a (ENSCARG00000014199) #31	gpr107 (ENSCARG00000014211) #30	ntmt1 (ENSCARG00000014228) #18	ENSCARG00000014240	ier5l (ENSCARG00000014243) #16	ptpa (ENSCARG00000014256) #15	crata (ENSCARG00000014355) #14	lrsam1 (ENSCARG00000015688) #19	rpl12 (ENSCARG00000000170) #20	pole3 (ENSCARG00000000215) #21	ccn1l1 (ENSCARG00000000221) #22	lmo4a (ENSCARG00000000232) #23	ENSCARG00000000244 ##25	ENSCARG00000000301	ENSCARG00000000336	prkaa1 (ENSCARG00000000442)	ENSCARG00000000581	surf1 (ENSCARG00000000586)	RPL7A (ENSCARG00000000600)	med22 (ENSCARG00000000632)	zgc:103692 (ENSCARG00000000655)	usp20 (ENSCARG00000000727)	ptges (ENSCARG00000000808)	garnl3 (ENSCARG00000000939)	ENSCARG00000001266	ENSCARG00000001269
Cyprininae	ANCESTRAL SPECIES	48	ENSGT00940000155567.w.b	ENSGT00940000159777	ENSGT00390000001195.a.b.b	ENSGT00930000151016.z	ENSGT00940000154645.B.i.a #31	ENSGT00940000160451.a #30	ENSGT00930000151050.a	ENSGT00390000008371.b.d #18	ENSGT00900000141021.b.a.d.d #16	ENSGT00390000011500.e #15	ENSGT01060000248556.A.a.a.a.b.a.d #14	ENSGT00530000064286.n	ENSGT00930000151044.b #19	ENSGT00390000006922.c #20	ENSGT00940000164386.e #21	ENSGT00940000155151.a.a.b.b #22	ENSGT00940000164907.b.b.b.a #23	ENSGT00940000154394.b.a.a.a.b.a.b ##25	ENSGT00390000020276.mb.a #28	ENSGT00940000165492.a.a.d	ENSGT00940000165492.a.a.c.b	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a.b	ENSGT00940000154886.a.b.l	ENSGT00940000158865.p	ENSGT00940000158797.u	ENSGT00390000006980.d	ENSGT00530000064194.h	ENSGT00940000153294.g	ENSGT00390000004339.t	ENSGT00390000009787.bb
Cyprininae_a	ANCESTRAL SPECIES	22	ENSGT00940000155567.w.b	ENSGT00940000159777	ENSGT00390000001195.a.b.b	ENSGT00930000151016.z	ENSGT00940000154645.B.i.a #31	ENSGT00940000160451.a #30	ENSGT00930000151050.a	ENSGT00390000008371.b.d #18	ENSGT00900000141021.b.a.d.d #16	ENSGT00390000011500.e #15	ENSGT01060000248556.A.a.a.a.b.a.d #14	ENSGT00530000064286.n	ENSGT00930000151044.b #19	ENSGT00390000006922.c #20	ENSGT00940000164386.e #21	ENSGT00940000155151.a.a.b.b #22	ENSGT00940000164907.b.b.b.a #23	ENSGT00940000154394.b.a.a.b.b.c.b ##25	ENSGT00940000165492.a.a.c.b	ENSGT01070000253744.b.b.f	ENSGT00940000154821.a.a.b	ENSGT00940000154886.a.b.l	ENSGT00940000158865.p	ENSGT00940000158797.u	ENSGT00390000006980.d	ENSGT00530000064194.h	ENSGT00940000153294.g	ENSGT00390000004339.t	ENSGT00390000009787.bb	ENSGT00940000158829.b	ENSGT00390000011980.b.b.b
Golden-line barbel	MODERN SPECIES	11	hspb15 (ENSSGRG00000006546)	dab2 (ENSSGRG00000006535)	c9 (ENSSGRG00000006507)	gas1b (ENSSGRG00000006506)	fbxw2 (ENSSGRG00000006505)	ncs1a (ENSSGRG00000006493) #31	gpr107 (ENSSGRG00000006218) #30	ndor1 (ENSSGRG00000005492)	ntmt1 (ENSSGRG00000005442) #18	ier5l (ENSSGRG00000005440) #16	ptpa (ENSSGRG00000003585) #15	crata (ENSSGRG00000001397) #14	lrsam1 (ENSSGRG00000046852) #19	rpl12 (ENSSGRG00000046847) #20	pole3 (ENSSGRG00000046846) #21	ccn1l1 (ENSSGRG00000046845) #22	lmo4a (ENSSGRG00000046844) #23	ENSSGRG00000046838 ##25	ENSSGRG00000046834 #28	ENSSGRG00000046831	ENSSGRG00000046830	NPFFR2 (ENSSGRG00000046781)	ENSSGRG00000046778	ENSSGRG00000046777	ENSSGRG00000046776	prkaa1 (ENSSGRG00000046663)	kyat1 (ENSSGRG00000046159)	surf6 (ENSSGRG00000046151)	surf1 (ENSSGRG00000046150)	RPL7A (ENSSGRG00000045999)	med22 (ENSSGRG00000045998)
Common carp reference	MODERN SPECIES	15	ENSCCRG00000060779	dab2 (ENSCCRG00000032132)	c9 (ENSCCRG00000032128)	fbxw2 (ENSCCRG00000074424)	ncs1a (ENSCCRG00000032121) #31	gpr107 (ENSCCRG00000032112) #30	ndor1 (ENSCCRG00000032106)	ntmt1 (ENSCCRG00000058345) #18	ier5l (ENSCCRG00000057758) #16	ptpa (ENSCCRG00000025867) #15	crata (ENSCCRG00000024065) #14	ENSCCRG00000024040	lrsam1 (ENSCCRG00000024030) #19	rpl12 (ENSCCRG00000035688) #20	pole3 (ENSCCRG00000054380) #21	ccn1l1 (ENSCCRG00000024280) #22	lmo4a (ENSCCRG00000035744) #23	zgc:55461 (ENSCCRG00000028081) ##25	ENSCCRG00000030567	ENSCCRG00000050873	ENSCCRG00000001587	ENSCCRG00000056731	prkaa1 (ENSCCRG00000034210)	kyat1 (ENSCCRG00000081468)	surf1 (ENSCCRG00000034272)	ENSCCRG00000057824	med22 (ENSCCRG00000034299)	zgc:103692 (ENSCCRG00000057134)	usp20 (ENSCCRG00000033287)	ptges (ENSCCRG00000077847)	garnl3 (ENSCCRG00000034141)
Goldfish	MODERN SPECIES	23	dab2 (ENSCARG00000053753)	c9 (ENSCARG00000053807)	gas1b (ENSCARG00000053873)	fbxw2 (ENSCARG00000053886)	ncs1a (ENSCARG00000053890) #31	gpr107 (ENSCARG00000053925) #30	ndor1 (ENSCARG00000054025)	ntmt1 (ENSCARG00000054134) #18	ier5l (ENSCARG00000054199) #16	ptpa (ENSCARG00000054252) #15	crata (ENSCARG00000055185) #14	ENSCARG00000057036	lrsam1 (ENSCARG00000057109) #19	rpl12 (ENSCARG00000058517) #20	pole3 (ENSCARG00000058656) #21	ccn1l1 (ENSCARG00000058690) #22	lmo4a (ENSCARG00000058713) #23	ENSCARG00000058801 ##25	ENSCARG00000058849 #28	ENSCARG00000058950	NPFFR2 (ENSCARG00000059007)	ENSCARG00000059013	prkaa1 (ENSCARG00000059027)	kyat1 (ENSCARG00000059358)	surf6 (ENSCARG00000059875)	surf1 (ENSCARG00000059885)	RPL7A (ENSCARG00000059940)	med22 (ENSCARG00000005742)	zgc:103692 (ENSCARG00000005767)	usp20 (ENSCARG00000005878)	ptges (ENSCARG00000006304)
Zebrafish	MODERN SPECIES	20	dab2 (ENSDARG00000031761)	c9 (ENSDARG00000016319)	gas1b (ENSDARG00000067984)	fbxw2 (ENSDARG00000009745)	ncs1a (ENSDARG00000055229) #31	gpr107 (ENSDARG00000103200) #30	ndor1 (ENSDARG00000007429)	ntmt1 (ENSDARG00000022399) #18	ier5l (ENSDARG00000054906) #16	ptpa (ENSDARG00000031985) #15	crata (ENSDARG00000040248) #14	ENSDARG00000095142	lrsam1 (ENSDARG00000060683) #19	rpl12 (ENSDARG00000006691) #20	pole3 (ENSDARG00000008551) #21	ccn1l1 (ENSDARG00000035422) #22	lmo4a (ENSDARG00000013853) #23	zgc:55461 (ENSDARG00000041723) ##25	ENSDARG00000041724	NPFFR2 (ENSDARG00000060702)	ENSDARG00000060578	ENSDARG00000060584	prkaa1 (ENSDARG00000060596)	ifitm1 (ENSDARG00000093303)	kyat1 (ENSDARG00000023645)	surf6 (ENSDARG00000035427)	surf1 (ENSDARG00000003592)	rpl7a (ENSDARG00000019230)	med22 (ENSDARG00000014148)	C5H9orf78 (ENSDARG00000002220)	usp20 (ENSDARG00000027501)
Osteoglossiformes	ANCESTRAL SPECIES	75									ENSGT00930000151016	ENSGT01060000248556.A.a.a.a.b.b ##14	ENSGT00940000158379	ENSGT00390000011500 #15	ENSGT00900000141021.b.a.c.a ##16	ENSGT00390000006784	ENSGT00530000064286.a	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a ##25	ENSGT00940000154394.b.a.a.a.b.b ##25	ENSGT00940000165492.a.a	ENSGT00390000016526.h #29	ENSGT00950000183101.a.b.b.a.a.l ##12	ENSGT00940000153391.c.b.a.h #7	ENSGT00940000157936	ENSGT00940000157194.f	ENSGT00390000016384	ENSGT00940000158501.a	ENSGT00940000153772.B	ENSGT00390000009566.d	ENSGT00550000074961.a.a
Asian bonytongue	MODERN SPECIES	8	ralgps1 (ENSSFOG00015017038)	ENSSFOG00015017133	ENSSFOG00015017015	ENSSFOG00015033301	ENSSFOG00015017012	fbxw2 (ENSSFOG00015016968)	ENSSFOG00015003976	NCS1 (ENSSFOG00015016804) #31	CRAT (ENSSFOG00015016764) ##14	ENSSFOG00015016722	ptpa (ENSSFOG00015016682) #15	IER5L (ENSSFOG00015030523) ##16	asb6 (ENSSFOG00015016641)	FKBP15 (ENSSFOG00015016577)	rpl12 (ENSSFOG00015031530) #20	ENSSFOG00015016467 #22	ENSSFOG00015016442 ##23	bcl2l16 (ENSSFOG00015016433)	ENSSFOG00015011323 ##25	ENSSFOG00015016374	FPGS (ENSSFOG00015016349) #29	CRB2 (ENSSFOG00015016231) ##12	lhx2b (ENSSFOG00015008780) #10	NEK6 (ENSSFOG00015032992) #9	NR5A1 (ENSSFOG00015008707) #7	nr6a1a (ENSSFOG00015008672)	OLFML2A (ENSSFOG00015008626)	rpl35 (ENSSFOG00015008582)	ARPC5L (ENSSFOG00015008543)	golga1 (ENSSFOG00015008493)	SCAI (ENSSFOG00015008413)
P. kingsleyae	MODERN SPECIES	36	ENSPKIG00000024679	ralgps1 (ENSPKIG00000024643)	si:dkey-56i24.1 (ENSPKIG00000024619)	fbxw2 (ENSPKIG00000024600)	ENSPKIG00000024575	ENSPKIG00000024565	ENSPKIG00000024549	ENSPKIG00000024542	ENSPKIG00000024531	zgc:154046 (ENSPKIG00000024502) ##14	ADAMTS13 (ENSPKIG00000024467)	ptpa (ENSPKIG00000024438) #15	IER5L (ENSPKIG00000024424) ##16	asb6 (ENSPKIG00000024415)	FKBP15 (ENSPKIG00000024375)	ccn1l1 (ENSPKIG00000024360) #22	ENSPKIG00000024343 ##23	bcl2l16 (ENSPKIG00000024322)	tubb2b (ENSPKIG00000024313) ##25	ENSPKIG00000024304 #28	ENSPKIG00000024292	FPGS (ENSPKIG00000024268) #29	CRB2 (ENSPKIG00000024247) ##12	ENSPKIG00000024237	lhx2b (ENSPKIG00000024197) #10	ENSPKIG00000024188	NEK6 (ENSPKIG00000024170) #9	ADGRD2 (ENSPKIG00000024114)	NR5A1 (ENSPKIG00000024096) #7	nr6a1a (ENSPKIG00000024074)	OLFML2A (ENSPKIG00000024055)
Spotted gar	MODERN SPECIES	660	CERCAM (ENSLOCG00000002746)	cfap157 (ENSLOCG00000002725)	sardh (ENSLOCG00000002697)	dbh (ENSLOCG00000002677)	FAM163B (ENSLOCG00000002663)	ADAMTSL2 (ENSLOCG00000002647)	mymk (ENSLOCG00000002633)	ENSLOCG00000002619	slc27a4 (ENSLOCG00000002609)	ENSLOCG00000002597	ENSLOCG00000002585	ENSLOCG00000002569	ENSLOCG00000002555	lrsam1 (ENSLOCG00000002536) #19	pole3 (ENSLOCG00000002521) #21	ccn1l1 (ENSLOCG00000002502) #22	lmo4a (ENSLOCG00000002487) #23	ENSLOCG00000002479	ENSLOCG00000002458	ENSLOCG00000002441 ##25	ENSLOCG00000002421 ##25	ENSLOCG00000002409 #28	ENSLOCG00000002383	tor4aa (ENSLOCG00000017339)	ENSLOCG00000002366	wdr31 (ENSLOCG00000002358)	EXD3 (ENSLOCG00000002330)	nrarpa (ENSLOCG00000017338)	ambp (ENSLOCG00000002312)	lcn15 (ENSLOCG00000002295)	slc2a8 (ENSLOCG00000002280)