Neopterygii	DUPLICATION
Neopterygii	DUPLICATION
Neopterygii	ANCESTRAL SPECIES	197											ENSGT00930000151050 #13	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907 #23	ENSGT00620000089226	ENSGT00940000154394.b.a.b ##24	ENSGT00940000154394.b.a.a.a.a.b ##24	ENSGT00940000154842.a.a	ENSGT00950000182888.b	ENSGT00940000166999.A	ENSGT01010000223148	ENSGT00910000144273	ENSGT00390000006843	ENSGT00950000186109	ENSGT00940000161928	ENSGT00940000160109	ENSGT01100000263580	ENSGT00940000158795
Osteoglossocephalai	ANCESTRAL SPECIES	49	ENSGT00940000156611	ENSGT00390000000642	ENSGT00940000163762.b	ENSGT00940000155945.i.a	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000156261	ENSGT00940000158540	ENSGT00940000159990	ENSGT00940000157419	ENSGT00940000165669	ENSGT00390000009566	ENSGT00940000153772.B	ENSGT00940000158501	ENSGT00390000016384	ENSGT00940000166116	ENSGT00940000172233	ENSGT00940000157194	ENSGT00940000157936
Clupeocephala	ANCESTRAL SPECIES	195	ENSGT00940000164541	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000155946.c.b	ENSGT00930000151016 #10	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000156261	ENSGT00940000158540	ENSGT00940000159990	ENSGT00940000157419	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000165669	ENSGT00390000009566	ENSGT00940000158501.d.a	ENSGT00390000016384.l.a	ENSGT00940000166116
Otomorpha	ANCESTRAL SPECIES	193	ENSGT00940000157955.d.a	ENSGT00940000160616	ENSGT00940000154079.b.b	ENSGT00940000155946.c.b	ENSGT00930000151016 #10	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00390000016526	ENSGT00940000155373	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000156261	ENSGT00940000158540	ENSGT00940000159990	ENSGT00940000157419	ENSGT00940000153391.c.b.a.j.b
Otophysi	ANCESTRAL SPECIES	100	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT00930000151050 #13	ENSGT00390000008371.b #14	ENSGT00900000141021.b.a.d #15	ENSGT00390000011500 #16	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00620000089226	ENSGT00940000164907.b.a ##23	ENSGT00940000155151.a.a.a ##22	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00390000020276.mb.b #25	ENSGT00940000165492.a.a #26	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a #28	ENSGT00940000154886.a.b	ENSGT00940000158865 #29	ENSGT00940000158797 #30	ENSGT00390000006980 #31	ENSGT00530000064194 #32	ENSGT00940000153294 #33	ENSGT00390000004339 #34	ENSGT00390000009787 #35	ENSGT00940000158829 #36
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT00930000151050 #13	ENSGT00390000008371.b #14	ENSGT00900000141021.b.a.d #15	ENSGT00390000011500 #16	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00620000089226	ENSGT00940000164907.b.a ##23	ENSGT00940000155151.a.a.a ##22	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b.c.b ##24	ENSGT00940000154394.b.a.a.a.b.a.b ##24	ENSGT00390000020276.mb.a ##25	ENSGT00390000020276.mb.b #25	ENSGT00940000165492.a.a #26	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a #28	ENSGT00940000154886.a.b	ENSGT00940000158865 #29	ENSGT00950000182857.a.b	ENSGT00940000158797 #30	ENSGT00390000006980 #31	ENSGT00530000064194 #32	ENSGT00940000153294 #33
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	48	ENSGT00940000155567.w.b #7	ENSGT00940000159777 #8	ENSGT00390000001195.a.b.b #9	ENSGT00930000151016.z #10	ENSGT00940000154645.B.i.a #11	ENSGT00940000160451.a #12	ENSGT00930000151050.a #13	ENSGT00390000008371.b.d #14	ENSGT00900000141021.b.a.d.d #15	ENSGT00390000011500.e #16	ENSGT01060000248556.A.a.a.a.b.a.d #17	ENSGT00530000064286.n #18	ENSGT00930000151044.b #19	ENSGT00390000006922.c #20	ENSGT00940000164386.e #21	ENSGT00940000155151.a.a.b.b #22	ENSGT00940000164907.b.b.b.a #23	ENSGT00940000154394.b.a.a.a.b.a.b ##24	ENSGT00390000020276.mb.a ##25	ENSGT00940000165492.a.a.d ##26	ENSGT00940000165492.a.a.c.b #26	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a.b #28	ENSGT00940000154886.a.b.l	ENSGT00940000158865.p #29	ENSGT00940000158797.u #30	ENSGT00390000006980.d ##31	ENSGT00530000064194.h #32	ENSGT00940000153294.g #33	ENSGT00390000004339.t #34	ENSGT00390000009787.bb #35
Goldfish	MODERN SPECIES	23	dab2 (ENSCARG00000053753) #7	c9 (ENSCARG00000053807) #8	gas1b (ENSCARG00000053873) #9	fbxw2 (ENSCARG00000053886) #10	ncs1a (ENSCARG00000053890) #11	gpr107 (ENSCARG00000053925) #12	ndor1 (ENSCARG00000054025) #13	ntmt1 (ENSCARG00000054134) #14	ier5l (ENSCARG00000054199) #15	ptpa (ENSCARG00000054252) #16	crata (ENSCARG00000055185) #17	ENSCARG00000057036 #18	lrsam1 (ENSCARG00000057109) #19	rpl12 (ENSCARG00000058517) #20	pole3 (ENSCARG00000058656) #21	ccn1l1 (ENSCARG00000058690) #22	lmo4a (ENSCARG00000058713) #23	ENSCARG00000058801 #24	ENSCARG00000058849 #25	ENSCARG00000058950 #26	NPFFR2 (ENSCARG00000059007) #27	ENSCARG00000059013 #28	prkaa1 (ENSCARG00000059027) #29	kyat1 (ENSCARG00000059358) #30	surf6 (ENSCARG00000059875) #31	surf1 (ENSCARG00000059885) #32	RPL7A (ENSCARG00000059940) #33	med22 (ENSCARG00000005742) #34	zgc:103692 (ENSCARG00000005767) #35	usp20 (ENSCARG00000005878) #36	ptges (ENSCARG00000006304) #37
Cyprininae_a	ANCESTRAL SPECIES	22	ENSGT00940000155567.w.b #7	ENSGT00940000159777 #8	ENSGT00390000001195.a.b.b #9	ENSGT00930000151016.z #10	ENSGT00940000154645.B.i.a #11	ENSGT00940000160451.a #12	ENSGT00930000151050.a #13	ENSGT00390000008371.b.d #14	ENSGT00900000141021.b.a.d.d #15	ENSGT00390000011500.e #16	ENSGT01060000248556.A.a.a.a.b.a.d #17	ENSGT00530000064286.n #18	ENSGT00930000151044.b #19	ENSGT00390000006922.c #20	ENSGT00940000164386.e #21	ENSGT00940000155151.a.a.b.b #22	ENSGT00940000164907.b.b.b.a #23	ENSGT00940000154394.b.a.a.b.b.c.b ##24	ENSGT00940000165492.a.a.c.b #26	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a.b #28	ENSGT00940000154886.a.b.l	ENSGT00940000158865.p #29	ENSGT00940000158797.u #30	ENSGT00390000006980.d ##31	ENSGT00530000064194.h #32	ENSGT00940000153294.g #33	ENSGT00390000004339.t #34	ENSGT00390000009787.bb #35	ENSGT00940000158829.b #36	ENSGT00390000011980.b.b.b #37
Golden-line barbel	MODERN SPECIES	11	hspb15 (ENSSGRG00000006546)	dab2 (ENSSGRG00000006535) #7	c9 (ENSSGRG00000006507) #8	gas1b (ENSSGRG00000006506) #9	fbxw2 (ENSSGRG00000006505) #10	ncs1a (ENSSGRG00000006493) #11	gpr107 (ENSSGRG00000006218) #12	ndor1 (ENSSGRG00000005492) #13	ntmt1 (ENSSGRG00000005442) #14	ier5l (ENSSGRG00000005440) #15	ptpa (ENSSGRG00000003585) #16	crata (ENSSGRG00000001397) #17	lrsam1 (ENSSGRG00000046852) #19	rpl12 (ENSSGRG00000046847) #20	pole3 (ENSSGRG00000046846) #21	ccn1l1 (ENSSGRG00000046845) #22	lmo4a (ENSSGRG00000046844) #23	ENSSGRG00000046838 ##24	ENSSGRG00000046834 ##25	ENSSGRG00000046831 ##26	ENSSGRG00000046830 #26	NPFFR2 (ENSSGRG00000046781) #27	ENSSGRG00000046778 #28	ENSSGRG00000046777	ENSSGRG00000046776	prkaa1 (ENSSGRG00000046663) #29	kyat1 (ENSSGRG00000046159) #30	surf6 (ENSSGRG00000046151) ##31	surf1 (ENSSGRG00000046150) #32	RPL7A (ENSSGRG00000045999) #33	med22 (ENSSGRG00000045998) #34
Common carp reference	MODERN SPECIES	15	ENSCCRG00000060779	dab2 (ENSCCRG00000032132) #7	c9 (ENSCCRG00000032128) #8	fbxw2 (ENSCCRG00000074424) #10	ncs1a (ENSCCRG00000032121) #11	gpr107 (ENSCCRG00000032112) #12	ndor1 (ENSCCRG00000032106) #13	ntmt1 (ENSCCRG00000058345) #14	ier5l (ENSCCRG00000057758) #15	ptpa (ENSCCRG00000025867) #16	crata (ENSCCRG00000024065) #17	ENSCCRG00000024040 #18	lrsam1 (ENSCCRG00000024030) #19	rpl12 (ENSCCRG00000035688) #20	pole3 (ENSCCRG00000054380) #21	ccn1l1 (ENSCCRG00000024280) #22	lmo4a (ENSCCRG00000035744) #23	zgc:55461 (ENSCCRG00000028081) ##24	ENSCCRG00000030567 #26	ENSCCRG00000050873 #27	ENSCCRG00000001587 #28	ENSCCRG00000056731	prkaa1 (ENSCCRG00000034210) #29	kyat1 (ENSCCRG00000081468) #30	surf1 (ENSCCRG00000034272) #32	ENSCCRG00000057824 #33	med22 (ENSCCRG00000034299) #34	zgc:103692 (ENSCCRG00000057134) #35	usp20 (ENSCCRG00000033287) #36	ptges (ENSCCRG00000077847) #37	garnl3 (ENSCCRG00000034141)
Cyprininae	ANCESTRAL SPECIES		ENSGT00940000164626.b.b.c.a.f	ENSGT00940000155882.a.b.b.e	ENSGT00940000155567.w.a ##7	ENSGT00390000001195.a.b.a ##9	ENSGT00930000151016.y ##10	ENSGT00940000154645.B.i.b ##11	ENSGT00940000160451.b ##12	ENSGT00930000151050.b ##13	ENSGT00390000008371.b.c ##14	ENSGT00900000141021.b.a.d.c ##15	ENSGT00390000011500.f ##16	ENSGT01060000248556.A.a.a.a.b.a.c ##17	ENSGT00930000151044.a ##19	ENSGT00390000006922.d ##20	ENSGT00940000164386.f ##21	ENSGT00940000155151.a.a.b.a ##22	ENSGT00940000164907.b.b.b.b ##23	ENSGT00940000154394.b.a.a.b.b.c.b ##24	ENSGT00940000165492.a.a.c.a ##26	ENSGT00940000154821.a.a.a ##28	ENSGT00940000154886.a.b.k	ENSGT00940000158865.o ##29	ENSGT00950000182857.a.b	ENSGT00940000158797.v ##30	ENSGT00390000006980.c #31	ENSGT00530000064194.g ##32	ENSGT00940000153294.h ##33	ENSGT00390000004339.s ##34	ENSGT00390000009787.cb ##35	ENSGT00940000158829.a ##36	ENSGT00390000011980.b.b.a ##37
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000164626.b.b.c.a.f	ENSGT00940000155882.a.b.b.e	ENSGT00940000155567.w.a ##7	ENSGT00390000001195.a.b.a ##9	ENSGT00930000151016.y ##10	ENSGT00940000163010.u.b	ENSGT00940000160451.b ##12	ENSGT00930000151050.b ##13	ENSGT00390000008371.b.c ##14	ENSGT00900000141021.b.a.d.c ##15	ENSGT00390000011500.f ##16	ENSGT01060000248556.A.a.a.a.b.a.c ##17	ENSGT00930000151044.a ##19	ENSGT00390000006922.d ##20	ENSGT00940000164386.f ##21	ENSGT00940000155151.a.a.b.a ##22	ENSGT00940000164907.b.b.b.b ##23	ENSGT00940000154394.b.a.a.b.b.c.a ##24	ENSGT00940000165492.a.a.c.a ##26	ENSGT00940000154821.a.a.a ##28	ENSGT00940000154886.a.b.k	ENSGT00940000158865.o ##29	ENSGT00950000182857.a.b	ENSGT00940000158797.v ##30	ENSGT00390000006980.c #31	ENSGT00530000064194.g ##32	ENSGT00390000004339.s ##34	ENSGT00390000009787.cb ##35	ENSGT00940000158829.a ##36	ENSGT00390000011980.b.b.a ##37	ENSGT00940000159362.g
Common carp reference	MODERN SPECIES	7	tescb (ENSCCRG00000071303)	m17 (ENSCCRG00000013882)	ENSCCRG00000013876	ENSCCRG00000072823	ENSCCRG00000056047	dab2 (ENSCCRG00000026586) ##7	fbxw2 (ENSCCRG00000053560) ##10	ENSCCRG00000071330	gpr107 (ENSCCRG00000043862) ##12	ntmt1 (ENSCCRG00000043894) ##14	ptpa (ENSCCRG00000031445) ##16	crata (ENSCCRG00000031927) ##17	lrsam1 (ENSCCRG00000034301) ##19	rpl12 (ENSCCRG00000071587) ##20	pole3 (ENSCCRG00000080860) ##21	ccn1l1 (ENSCCRG00000035740) ##22	lmo4a (ENSCCRG00000075174) ##23	ENSCCRG00000054308 ##24	ENSCCRG00000031181 ##26	ENSCCRG00000052661 ##26	ENSCCRG00000055438 ##28	ENSCCRG00000031194	prkaa1 (ENSCCRG00000078593) ##29	kyat1 (ENSCCRG00000062125) ##30	RPL7A (ENSCCRG00000034022) ##33	surf1 (ENSCCRG00000081884) ##32	med22 (ENSCCRG00000074301) ##34	zgc:103692 (ENSCCRG00000034113) ##35	usp20 (ENSCCRG00000033705) ##36	ptges (ENSCCRG00000060524) ##37	garnl3 (ENSCCRG00000044660)
Golden-line barbel	MODERN SPECIES	91	ENSSGRG00000015499	hspb15 (ENSSGRG00000015504)	dab2 (ENSSGRG00000015508) ##7	ENSSGRG00000015528 #8	gas1b (ENSSGRG00000015530) ##9	fbxw2 (ENSSGRG00000015532) ##10	gpr107 (ENSSGRG00000015537) ##12	ndor1 (ENSSGRG00000015544) ##13	ntmt1 (ENSSGRG00000015561) ##14	ier5l (ENSSGRG00000015565) ##15	ptpa (ENSSGRG00000015567) ##16	crata (ENSSGRG00000015586) ##17	lrsam1 (ENSSGRG00000016091) ##19	rpl12 (ENSSGRG00000016092) ##20	pole3 (ENSSGRG00000016141) ##21	ccn1l1 (ENSSGRG00000016144) ##22	lmo4a (ENSSGRG00000016145) ##23	zgc:55461 (ENSSGRG00000016148) ##24	ENSSGRG00000016154 ##26	ENSSGRG00000016195 ##28	ENSSGRG00000016196	prkaa1 (ENSSGRG00000016198) ##29	ifitm1 (ENSSGRG00000016208)	kyat1 (ENSSGRG00000016230) ##30	surf6 (ENSSGRG00000016898) #31	surf1 (ENSSGRG00000016901) ##32	ENSSGRG00000016903	med22 (ENSSGRG00000016907) ##34	zgc:103692 (ENSSGRG00000016908) ##35	usp20 (ENSSGRG00000016911) ##36	ptges (ENSSGRG00000017233) ##37
Goldfish	MODERN SPECIES	44	ENSCARG00000013314	hspb15 (ENSCARG00000014158)	dab2 (ENSCARG00000014173) ##7	gas1b (ENSCARG00000014190) ##9	fbxw2 (ENSCARG00000014196) ##10	ncs1a (ENSCARG00000014199) ##11	gpr107 (ENSCARG00000014211) ##12	ntmt1 (ENSCARG00000014228) ##14	ENSCARG00000014240	ier5l (ENSCARG00000014243) ##15	ptpa (ENSCARG00000014256) ##16	crata (ENSCARG00000014355) ##17	lrsam1 (ENSCARG00000015688) ##19	rpl12 (ENSCARG00000000170) ##20	pole3 (ENSCARG00000000215) ##21	ccn1l1 (ENSCARG00000000221) ##22	lmo4a (ENSCARG00000000232) ##23	ENSCARG00000000244 ##24	ENSCARG00000000301 ##26	ENSCARG00000000336	prkaa1 (ENSCARG00000000442) ##29	ENSCARG00000000581	surf1 (ENSCARG00000000586) ##32	RPL7A (ENSCARG00000000600) ##33	med22 (ENSCARG00000000632) ##34	zgc:103692 (ENSCARG00000000655) ##35	usp20 (ENSCARG00000000727) ##36	ptges (ENSCARG00000000808) ##37	garnl3 (ENSCARG00000000939)	ENSCARG00000001266	ENSCARG00000001269
Zebrafish	MODERN SPECIES	20	dab2 (ENSDARG00000031761) #7	c9 (ENSDARG00000016319) #8	gas1b (ENSDARG00000067984) #9	fbxw2 (ENSDARG00000009745) #10	ncs1a (ENSDARG00000055229) #11	gpr107 (ENSDARG00000103200) #12	ndor1 (ENSDARG00000007429) #13	ntmt1 (ENSDARG00000022399) #14	ier5l (ENSDARG00000054906) #15	ptpa (ENSDARG00000031985) #16	crata (ENSDARG00000040248) #17	ENSDARG00000095142 #18	lrsam1 (ENSDARG00000060683) #19	rpl12 (ENSDARG00000006691) #20	pole3 (ENSDARG00000008551) #21	ccn1l1 (ENSDARG00000035422) #22	lmo4a (ENSDARG00000013853) #23	zgc:55461 (ENSDARG00000041723) ##24	ENSDARG00000041724 #26	NPFFR2 (ENSDARG00000060702) #27	ENSDARG00000060578 #28	ENSDARG00000060584	prkaa1 (ENSDARG00000060596) #29	ifitm1 (ENSDARG00000093303)	kyat1 (ENSDARG00000023645) #30	surf6 (ENSDARG00000035427) #31	surf1 (ENSDARG00000003592) #32	rpl7a (ENSDARG00000019230)	med22 (ENSDARG00000014148) #34	C5H9orf78 (ENSDARG00000002220) #35	usp20 (ENSDARG00000027501) #36
Characiphysae	ANCESTRAL SPECIES	142	ENSGT00940000155567 #7	ENSGT00940000159777 #8	ENSGT00390000001195.a.b #9	ENSGT00930000151016 #10	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT00930000151050 #13	ENSGT00390000008371.b #14	ENSGT00900000141021.b.a.d #15	ENSGT00390000011500 #16	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.b.a.b ##24	ENSGT00390000020276.mb.a ##25	ENSGT00390000020276.mb.b #25	ENSGT00940000165492.a.a #26	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a #28	ENSGT00940000154886.a.b	ENSGT00940000158865 #29	ENSGT00940000158797 #30	ENSGT00390000006980 #31	ENSGT00530000064194 #32	ENSGT00940000153294 #33	ENSGT00390000004339 #34	ENSGT00390000009787 #35
Channel catfish	MODERN SPECIES	20	GAS1 (ENSIPUG00000006779) #9	fbxw2 (ENSIPUG00000006792) #10	ENSIPUG00000006858	ncs1 (ENSIPUG00000006898) #11	gpr107 (ENSIPUG00000006957) #12	ndor1 (ENSIPUG00000006992) #13	ENSIPUG00000007066	ntmt1 (ENSIPUG00000007083) #14	ier5l (ENSIPUG00000007148) #15	ptpa (ENSIPUG00000007164) #16	crat (ENSIPUG00000007250) #17	ENSIPUG00000007367 #18	Lrsam1 (ENSIPUG00000007487) #19	rpl12 (ENSIPUG00000007575) #20	pole3 (ENSIPUG00000007668) #21	ccn1l1 (ENSIPUG00000007680) #22	lmo4a (ENSIPUG00000007705) #23	ENSIPUG00000007738 #24	ENSIPUG00000007750	ENSIPUG00000007759 #26	NPFFR2 (ENSIPUG00000007782) #27	ENSIPUG00000007855 #28	ENSIPUG00000007883	prkaa1 (ENSIPUG00000007912) #29	kyat1 (ENSIPUG00000007957) #30	kyat1 (ENSIPUG00000007984) #30	kyat1 (ENSIPUG00000008008) #30	surf6 (ENSIPUG00000008066) #31	surf1 (ENSIPUG00000008089) #32	rpl7a (ENSIPUG00000008146)	med22 (ENSIPUG00000008190) #34
Characiphysae_b	ANCESTRAL SPECIES	43	ENSGT00940000155567 #7	ENSGT00940000159777 #8	ENSGT00390000001195.a.b #9	ENSGT00930000151016 #10	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT00930000151050 #13	ENSGT00390000008371.b #14	ENSGT00900000141021.b.a.d #15	ENSGT00390000011500 #16	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.b.a.b ##24	ENSGT00390000020276.mb.a ##25	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a #28	ENSGT00940000154886.a.b	ENSGT00940000158865 #29	ENSGT00940000158797 #30	ENSGT00390000006980 #31	ENSGT00530000064194 #32	ENSGT00940000153294 #33	ENSGT00390000004339 #34	ENSGT00390000009787 #35	ENSGT00940000158829 #36	ENSGT00390000011980.b.b #37
Electric eel	MODERN SPECIES	29	gabarapa (ENSEEEG00000016196)	gps2 (ENSEEEG00000016194)	tp53 (ENSEEEG00000016191)	ENSEEEG00000016190	capga (ENSEEEG00000016178)	ncs1a (ENSEEEG00000016162) #11	gpr107 (ENSEEEG00000016155) #12	ndor1 (ENSEEEG00000016145) #13	ntmt1 (ENSEEEG00000016143) #14	ier5l (ENSEEEG00000016141) #15	ptpa (ENSEEEG00000015855) #16	crata (ENSEEEG00000015351) #17	lrsam1 (ENSEEEG00000015206) #19	rpl12 (ENSEEEG00000015168) #20	pole3 (ENSEEEG00000015165) #21	ccn1l1 (ENSEEEG00000015155) #22	lmo4a (ENSEEEG00000015152) #23	ENSEEEG00000015143 ##24	ENSEEEG00000015134 ##25	NPFFR2 (ENSEEEG00000015048) #27	ENSEEEG00000015040 #28	ENSEEEG00000015021	prkaa1 (ENSEEEG00000015011) #29	kyat1 (ENSEEEG00000014998) #30	surf6 (ENSEEEG00000014997) #31	surf1 (ENSEEEG00000014996) #32	RPL7A (ENSEEEG00000014979) #33	med22 (ENSEEEG00000014972) #34	zgc:103692 (ENSEEEG00000014971) #35	usp20 (ENSEEEG00000014969) #36	ptges (ENSEEEG00000014967) #37
Characoidei	ANCESTRAL SPECIES	69	ENSGT00940000155567 #7	ENSGT00940000159777 #8	ENSGT00390000001195.a.b #9	ENSGT00930000151016 #10	ENSGT00940000154645.B #11	ENSGT00940000160451 #12	ENSGT00930000151050 #13	ENSGT00390000008371.b #14	ENSGT00900000141021.b.a.d #15	ENSGT00390000011500 #16	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00530000064286 #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT01070000253744.b.b.f #27	ENSGT00940000154821.a.a #28	ENSGT00940000154886.a.b	ENSGT00940000158865 #29	ENSGT00940000158797 #30	ENSGT00390000006980 #31	ENSGT00530000064194 #32	ENSGT00940000155193	ENSGT00390000004339 #34	ENSGT00390000009787 #35	ENSGT00940000158829 #36	ENSGT00390000011980.b.b #37	ENSGT00390000016067	ENSGT01010000222313.A.b.b.b.a
Red-bellied piranha	MODERN SPECIES	2	ENSPNAG00000023180	c9 (ENSPNAG00000023200) #8	gas1b (ENSPNAG00000023216) #9	fbxw2 (ENSPNAG00000023239) #10	ncs1a (ENSPNAG00000023289) #11	gpr107 (ENSPNAG00000023306) #12	ndor1 (ENSPNAG00000023402) #13	ntmt1 (ENSPNAG00000023338) #14	ier5l (ENSPNAG00000023424) #15	ptpa (ENSPNAG00000023503) #16	crata (ENSPNAG00000023586) #17	ENSPNAG00000023633 #18	lrsam1 (ENSPNAG00000023778) #19	rpl12 (ENSPNAG00000023834) #20	pole3 (ENSPNAG00000023860) #21	ccn1l1 (ENSPNAG00000023906) #22	lmo4a (ENSPNAG00000023937) #23	zgc:55461 (ENSPNAG00000023984) #24	ENSPNAG00000024010	ENSPNAG00000024069 #25	NPFFR2 (ENSPNAG00000024089) #27
Mexicana tetra	MODERN SPECIES	1329																ccn1l1 (ENSAMXG00000012731) #22	lmo4a (ENSAMXG00000035221) #23	zgc:55461 (ENSAMXG00000033008) #24	ENSAMXG00000041464	ENSAMXG00000012686	ENSAMXG00000041483 ##25	ENSAMXG00000033350 #25	ENSAMXG00000030558 #26	ENSAMXG00000037785 #26	ENSAMXG00000040666 #26	ENSAMXG00000041783 #26
Clupeiformes	ANCESTRAL SPECIES	105	ENSGT00940000160918	ENSGT00940000153601.a.a.e.b.a	ENSGT00940000154079.b.b	ENSGT00940000155946.c.b	ENSGT00930000151016 #10	ENSGT00940000154645.B.e #11	ENSGT00940000160451 #12	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d.a #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.mb.b #25	ENSGT00390000016526	ENSGT00940000155373	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000156261	ENSGT00940000158540	ENSGT00940000159990	ENSGT00940000157419	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157936	ENSGT00940000157194.d	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000026083	zbtb43 (ENSCHAG00000002356)	RALGPS1 (ENSCHAG00000002473)	angptl2a (ENSCHAG00000003585)	fbxw2 (ENSCHAG00000003600) #10	ncs1a (ENSCHAG00000003645) #11	gpr107 (ENSCHAG00000003724) #12	crata (ENSCHAG00000003848) #17	ptpa (ENSCHAG00000004320) #16	ier5l (ENSCHAG00000004832) #15	ntmt1 (ENSCHAG00000004859) #14	ndor1 (ENSCHAG00000004879) #13	lrsam1 (ENSCHAG00000005132) #19	rpl12 (ENSCHAG00000005485) #20	pole3 (ENSCHAG00000005619) #21	ccn1l1 (ENSCHAG00000005656) #22	lmo4a (ENSCHAG00000005730) #23	ENSCHAG00000005749 ##24	ENSCHAG00000005894 #25	fpgs (ENSCHAG00000006452)	cdk9 (ENSCHAG00000007237)	CRB2 (ENSCHAG00000007287)	DENND1A (ENSCHAG00000007433)	LHX2 (ENSCHAG00000009120)	NEK6 (ENSCHAG00000009167)	psmb7 (ENSCHAG00000009649)	nr5a1b (ENSCHAG00000009743)	NR6A1 (ENSCHAG00000009757)	OLFML2A (ENSCHAG00000009877)	rpl35 (ENSCHAG00000009913)	arpc5lb (ENSCHAG00000009956)
Denticle herring	MODERN SPECIES	13	zbtb43 (ENSDCDG00000027184)	RALGPS1 (ENSDCDG00000027193)	angptl2a (ENSDCDG00000027249)	fbxw2 (ENSDCDG00000027250) #10	ncs1a (ENSDCDG00000027251) #11	gpr107 (ENSDCDG00000027253) #12	crata (ENSDCDG00000027328) #17	ptpa (ENSDCDG00000027993) #16	ier5l (ENSDCDG00000028362) #15	ntmt1 (ENSDCDG00000028367) #14	ndor1 (ENSDCDG00000028380) #13	lrsam1 (ENSDCDG00000028407) #19	rpl12 (ENSDCDG00000028508) #20	pole3 (ENSDCDG00000028534) #21	ENSDCDG00000028537	ccn1l1 (ENSDCDG00000028541) #22	lmo4a (ENSDCDG00000028675) #23	ENSDCDG00000028678 ##24	ENSDCDG00000028697 #25	fpgs (ENSDCDG00000028799)	cdk9 (ENSDCDG00000029739)	CRB2 (ENSDCDG00000029740)	DENND1A (ENSDCDG00000029744)	LHX2 (ENSDCDG00000013115)	NEK6 (ENSDCDG00000013125)	psmb7 (ENSDCDG00000013357)	nr5a1b (ENSDCDG00000013415)	NR6A1 (ENSDCDG00000013420)	OLFML2A (ENSDCDG00000013436)	ENSDCDG00000013448	rpl35 (ENSDCDG00000013468)
Euteleosteomorpha	ANCESTRAL SPECIES	293							ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00930000151044 #19	ENSGT00940000170916	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000165492.a.a #26
Protacanthopterygii	ANCESTRAL SPECIES	17	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.e.b ##24	ENSGT00940000165492.b ##26	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000165492.a.a #26	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276 #25	ENSGT00390000008042.B.o	ENSGT01100000263515.a.b.a.b.b.k.a.a.b	ENSGT00390000008042.B.p	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000154645.B #11	ENSGT00940000164697.b	ENSGT00940000157194	ENSGT00390000016384.l.b
Salmoninae	ANCESTRAL SPECIES	134	ENSGT00940000159990	ENSGT00940000158540.y.a	ENSGT00940000156261.db.a	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000160615.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000165492.a.a #26	ENSGT00390000004692.d.a.n	ENSGT00980000199397.a	ENSGT00940000154394.b.a.b.q ##24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00940000159990	ENSGT00940000158540.y.a	ENSGT00940000156261.db.a	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000160615.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000154394.b.a.b.q ##24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d
Salmo	ANCESTRAL SPECIES		ENSGT00940000159990	ENSGT00940000158540.y.a	ENSGT00940000156261.db.a	ENSGT00940000160615.a.b	ENSGT00940000155373	ENSGT00940000167707	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00390000020276.lb #25	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT01100000263505.b.b.a.b.a.a.a.b.a	ENSGT01000000220495
Atlantic salmon	MODERN SPECIES		NEK6 (ENSSSAG00000111428)	LHX2 (ENSSSAG00000069676)	crb2a (ENSSSAG00000070752)	DENND1A (ENSSSAG00000070774)	cdk9 (ENSSSAG00000070738)	ENSSSAG00000070732	crata (ENSSSAG00000067447) #17	ptpa (ENSSSAG00000066908) #16	IER5 (ENSSSAG00000066882) #15	ntmt1 (ENSSSAG00000066881) #14	ndor1 (ENSSSAG00000066849) #13	ENSSSAG00000066833 #18	rpl12 (ENSSSAG00000066776) #20	lrsam1 (ENSSSAG00000066808) #19	pole3 (ENSSSAG00000066768) #21	ccn1l1 (ENSSSAG00000116908) #22	lmo4a (ENSSSAG00000066759) #23	zgc:55461 (ENSSSAG00000101622) #24	ENSSSAG00000066731 #25	ENSSSAG00000066321	ENSSSAG00000066294 #12	ncs1a (ENSSSAG00000066286)	ENSSSAG00000094965	RPL35 (ENSSSAG00000066273)	arpc5l (ENSSSAG00000066267)	SCAI (ENSSSAG00000117569)	ppp6c (ENSSSAG00000119839)	ENSSSAG00000065463	ENSSSAG00000065449	ENSSSAG00000064650	ENSSSAG00000114149
River trout	MODERN SPECIES	15	LHX2 (ENSSTUG00000017212)	DENND1A (ENSSTUG00000017039)	ENSSTUG00000016961	cdk9 (ENSSTUG00000016931)	ENSSTUG00000016927	crata (ENSSTUG00000014589) #17	ptpa (ENSSTUG00000013797) #16	ier5l (ENSSTUG00000013752) #15	ntmt1 (ENSSTUG00000013744) #14	ndor1 (ENSSTUG00000013700) #13	ENSSTUG00000013659 #18	lrsam1 (ENSSTUG00000013165) #19	ENSSTUG00000013137	rpl12 (ENSSTUG00000013074) #20	pole3 (ENSSTUG00000013038) #21	ccn1l1 (ENSSTUG00000013028) #22	ENSSTUG00000013026	lmo4a (ENSSTUG00000013015) #23	ENSSTUG00000012998	ENSSTUG00000012981	ENSSTUG00000012952 ##24	ENSSTUG00000012902 #26	fpgs (ENSSTUG00000010958)	gpr107 (ENSSTUG00000010800) #12	ENSSTUG00000010777	ENSSTUG00000010763	rpl35 (ENSSTUG00000010753)	arpc5lb (ENSSTUG00000010719)	SCAI (ENSSTUG00000010309)	ppp6c (ENSSTUG00000010278)	p2rx4a (ENSSTUG00000010155)
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00940000157419.x	ENSGT00940000159990.d	ENSGT00940000158540.y.a	ENSGT00940000156261.db.a	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000165492.a.a #26	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00940000157419.x	ENSGT00940000159990.d	ENSGT00940000158540.y.a	ENSGT00940000156261.db.a	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000165492.a.a #26	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a	ENSGT00940000161345.c	ENSGT00940000156340.a.d.c
Coho salmon	MODERN SPECIES	15	NEK6 (ENSOKIG00005039628)	LHX2 (ENSOKIG00005039581)	DENND1A (ENSOKIG00005038947)	ENSOKIG00005038911	crb2a (ENSOKIG00005038790)	cdk9 (ENSOKIG00005038769)	crata (ENSOKIG00005036280) #17	ptpa (ENSOKIG00005037321) #16	ier5l (ENSOKIG00005037286) #15	ntmt1 (ENSOKIG00005037263) #14	ndor1 (ENSOKIG00005037020) #13	ENSOKIG00005036987 #18	lrsam1 (ENSOKIG00005036797) #19	rpl12 (ENSOKIG00005036665) #20	pole3 (ENSOKIG00005036619) #21	ccn1l1 (ENSOKIG00005036602) #22	lmo4a (ENSOKIG00005036570) #23	ENSOKIG00005036524 ##24	ENSOKIG00005036469 #26	fpgs (ENSOKIG00005035313)	gpr107 (ENSOKIG00005035007) #12	ENSOKIG00005034963	ENSOKIG00005034941	RPL35 (ENSOKIG00005034926)	arpc5lb (ENSOKIG00005034885)	SCAI (ENSOKIG00005034777)	ppp6c (ENSOKIG00005034752)	ENSOKIG00005034668	PTGES2 (ENSOKIG00005034633)	zer1 (ENSOKIG00005034579)	TBC1D13 (ENSOKIG00005034529)
Chinook salmon	MODERN SPECIES	12	psmb7 (ENSOTSG00005047328)	NEK6 (ENSOTSG00005047329)	LHX2 (ENSOTSG00005047331)	DENND1A (ENSOTSG00005047332)	CRB2 (ENSOTSG00005047456)	crata (ENSOTSG00005047465) #17	ptpa (ENSOTSG00005047657) #16	ier5l (ENSOTSG00005047663) #15	ntmt1 (ENSOTSG00005047665) #14	ndor1 (ENSOTSG00005047666) #13	ENSOTSG00005047669 #18	lrsam1 (ENSOTSG00005047670) #19	rpl12 (ENSOTSG00005047672) #20	pole3 (ENSOTSG00005047680) #21	ENSOTSG00005047681	ccn1l1 (ENSOTSG00005047682) #22	lmo4a (ENSOTSG00005047683) #23	ENSOTSG00005047684	TUBB4B (ENSOTSG00005047686) ##24	ENSOTSG00005047687 #26	fpgs (ENSOTSG00005047697)	gpr107 (ENSOTSG00005047719) #12	ENSOTSG00005047726	ENSOTSG00005047730	rpl35 (ENSOTSG00005047731)	arpc5lb (ENSOTSG00005047733)	SCAI (ENSOTSG00005047741)	ppp6c (ENSOTSG00005047746)	p2rx4a (ENSOTSG00005047749)	ENSOTSG00005047750	PTGES2 (ENSOTSG00005047751)
Rainbow trout	MODERN SPECIES	26	DENND1A (ENSOMYG00000041827)	ENSOMYG00000072052	crb2a (ENSOMYG00000042025)	ENSOMYG00000042044	crata (ENSOMYG00000042148) #17	ptpa (ENSOMYG00000042435) #16	ENSOMYG00000060240	ier5l (ENSOMYG00000042486) #15	ENSOMYG00000060356	ntmt1 (ENSOMYG00000042491) #14	ndor1 (ENSOMYG00000042500) #13	ENSOMYG00000042517 #18	lrsam1 (ENSOMYG00000042530) #19	rpl12 (ENSOMYG00000042549) #20	pole3 (ENSOMYG00000042572) #21	ccn1l1 (ENSOMYG00000042576) #22	lmo4a (ENSOMYG00000042581) #23	ENSOMYG00000042585	ENSOMYG00000042589 #26	ENSOMYG00000042662	ENSOMYG00000042954 #12	ENSOMYG00000042982	ENSOMYG00000077280	ENSOMYG00000042991	ENSOMYG00000068299	RPL35 (ENSOMYG00000042997)	arpc5l (ENSOMYG00000043006)	SCAI (ENSOMYG00000043028)	ppp6c (ENSOMYG00000043082)	ENSOMYG00000043101	ENSOMYG00000043121
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1573							ENSHHUG00000050502	ntmt1 (ENSHHUG00000050489) #14	ndor1 (ENSHHUG00000050475) #13	ENSHHUG00000050471	ENSHHUG00000050466 #18	lrsam1 (ENSHHUG00000050460) #19	rpl12 (ENSHHUG00000050429) #20	pole3 (ENSHHUG00000050421) #21	ENSHHUG00000050420	ccn1l1 (ENSHHUG00000050415) #22	lmo4a (ENSHHUG00000050413) #23	zgc:55461 (ENSHHUG00000050408) #24	ENSHHUG00000050390 #26	fpgs (ENSHHUG00000050379)	gpr107 (ENSHHUG00000050371) #12	ENSHHUG00000050325	ENSHHUG00000050321
Huchen	MODERN SPECIES	222										ENSHHUG00000030785	DENND1A (ENSHHUG00000030793)	ENSHHUG00000030815	ENSHHUG00000030817 #16	ier5l (ENSHHUG00000030819) #15	ENSHHUG00000030821	ccn1l1 (ENSHHUG00000030825) #22	lmo4a (ENSHHUG00000030835) #23	arpc5lb (ENSHHUG00000030847)	ppp6c (ENSHHUG00000030893)	ENSHHUG00000030902
Northern pike	MODERN SPECIES	13	nr5a1b (ENSELUG00000019192)	psmb7 (ENSELUG00000019284)	NEK6 (ENSELUG00000019344)	LHX2 (ENSELUG00000019408)	DENND1A (ENSELUG00000000844)	CRB2 (ENSELUG00000019522)	cdk9 (ENSELUG00000019692)	crata (ENSELUG00000019745) #17	ptpa (ENSELUG00000000869) #16	ier5l (ENSELUG00000019814) #15	ENSELUG00000034166	ntmt1 (ENSELUG00000019833) #14	lrsam1 (ENSELUG00000019893) #19	rpl12 (ENSELUG00000019938) #20	pole3 (ENSELUG00000001285) #21	ccn1l1 (ENSELUG00000019976) #22	lmo4a (ENSELUG00000019991) #23	TUBB4B (ENSELUG00000020007) ##24	ENSELUG00000030475 ##24	ENSELUG00000024741 #25	ENSELUG00000020184 #25	ENSELUG00000027081 #25	fpgs (ENSELUG00000020278)	gpr107 (ENSELUG00000020299) #12	ncs1a (ENSELUG00000032344) #11	ENSELUG00000033861	ENSELUG00000020408	ENSELUG00000020415	ENSELUG00000020421	ENSELUG00000020427	ENSELUG00000020436
Osteoglossiformes	ANCESTRAL SPECIES	75									ENSGT00930000151016 #10	ENSGT01060000248556.A.a.a.a.b.b ##17	ENSGT00940000158379	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.c.a ##15	ENSGT00390000006784	ENSGT00530000064286.a #18	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a ##24	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.a.a #26	ENSGT00390000016526.h	ENSGT00950000183101.a.b.b.a.a.l	ENSGT00940000153391.c.b.a.h	ENSGT00940000157936	ENSGT00940000157194.f	ENSGT00390000016384	ENSGT00940000158501.a	ENSGT00940000153772.B	ENSGT00390000009566.d	ENSGT00550000074961.a.a
Asian bonytongue	MODERN SPECIES	8	ralgps1 (ENSSFOG00015017038)	ENSSFOG00015017133	ENSSFOG00015017015	ENSSFOG00015033301	ENSSFOG00015017012	fbxw2 (ENSSFOG00015016968) #10	ENSSFOG00015003976	NCS1 (ENSSFOG00015016804) #11	CRAT (ENSSFOG00015016764) ##17	ENSSFOG00015016722	ptpa (ENSSFOG00015016682) #16	IER5L (ENSSFOG00015030523) ##15	asb6 (ENSSFOG00015016641)	FKBP15 (ENSSFOG00015016577) #18	rpl12 (ENSSFOG00015031530) #20	ENSSFOG00015016467 #22	ENSSFOG00015016442 ##23	bcl2l16 (ENSSFOG00015016433)	ENSSFOG00015011323 ##24	ENSSFOG00015016374 #26	FPGS (ENSSFOG00015016349)	CRB2 (ENSSFOG00015016231)	lhx2b (ENSSFOG00015008780)	NEK6 (ENSSFOG00015032992)	NR5A1 (ENSSFOG00015008707)	nr6a1a (ENSSFOG00015008672)	OLFML2A (ENSSFOG00015008626)	rpl35 (ENSSFOG00015008582)	ARPC5L (ENSSFOG00015008543)	golga1 (ENSSFOG00015008493)	SCAI (ENSSFOG00015008413)
P. kingsleyae	MODERN SPECIES	36	ENSPKIG00000024679	ralgps1 (ENSPKIG00000024643)	si:dkey-56i24.1 (ENSPKIG00000024619)	fbxw2 (ENSPKIG00000024600) #10	ENSPKIG00000024575	ENSPKIG00000024565	ENSPKIG00000024549	ENSPKIG00000024542	ENSPKIG00000024531	zgc:154046 (ENSPKIG00000024502) ##17	ADAMTS13 (ENSPKIG00000024467)	ptpa (ENSPKIG00000024438) #16	IER5L (ENSPKIG00000024424) ##15	asb6 (ENSPKIG00000024415)	FKBP15 (ENSPKIG00000024375) #18	ccn1l1 (ENSPKIG00000024360) #22	ENSPKIG00000024343 ##23	bcl2l16 (ENSPKIG00000024322)	tubb2b (ENSPKIG00000024313) ##24	ENSPKIG00000024304 #25	ENSPKIG00000024292	FPGS (ENSPKIG00000024268)	CRB2 (ENSPKIG00000024247)	ENSPKIG00000024237	lhx2b (ENSPKIG00000024197)	ENSPKIG00000024188	NEK6 (ENSPKIG00000024170)	ADGRD2 (ENSPKIG00000024114)	NR5A1 (ENSPKIG00000024096)	nr6a1a (ENSPKIG00000024074)	OLFML2A (ENSPKIG00000024055)
Spotted gar	MODERN SPECIES	660	CERCAM (ENSLOCG00000002746)	cfap157 (ENSLOCG00000002725)	sardh (ENSLOCG00000002697)	dbh (ENSLOCG00000002677)	FAM163B (ENSLOCG00000002663)	ADAMTSL2 (ENSLOCG00000002647)	mymk (ENSLOCG00000002633)	ENSLOCG00000002619	slc27a4 (ENSLOCG00000002609)	ENSLOCG00000002597	ENSLOCG00000002585	ENSLOCG00000002569 #18	ENSLOCG00000002555	lrsam1 (ENSLOCG00000002536) #19	pole3 (ENSLOCG00000002521) #21	ccn1l1 (ENSLOCG00000002502) #22	lmo4a (ENSLOCG00000002487) #23	ENSLOCG00000002479	ENSLOCG00000002458	ENSLOCG00000002441 ##24	ENSLOCG00000002421 ##24	ENSLOCG00000002409 #25	ENSLOCG00000002383	tor4aa (ENSLOCG00000017339)	ENSLOCG00000002366	wdr31 (ENSLOCG00000002358)	EXD3 (ENSLOCG00000002330)	nrarpa (ENSLOCG00000017338)	ambp (ENSLOCG00000002312)	lcn15 (ENSLOCG00000002295)	slc2a8 (ENSLOCG00000002280)
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000155151.a.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155151.a.a.a ##22
Clupeocephala	ANCESTRAL SPECIES	292																ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00390000020276 #25	ENSGT00940000165492.a.a #26	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000155373	ENSGT00390000016526	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000153391.c.b.a.i	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000158501.d.b
Otomorpha	ANCESTRAL SPECIES	194			ENSGT00390000013948.a	ENSGT00390000014563.b	ENSGT00940000155648.A.a.b	ENSGT00390000003246	ENSGT00940000163584.b.b	ENSGT00390000011010.a.a.t	ENSGT00940000161253	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000157038.a.a	ENSGT00530000064712	ENSGT00940000153710.a.f	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a.d ##24	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194.d	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a	ENSGT00390000009566	ENSGT00550000074961.b	ENSGT00940000155841.c.b	ENSGT00940000158633.a	ENSGT00390000001098	ENSGT00940000156811.b
Clupeiformes	ANCESTRAL SPECIES	413												ENSGT00940000164785	ENSGT00390000002634.a.e.c	ENSGT00940000153710.a.f	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a.d ##24	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000167390	ENSGT01060000248575.C
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000026341	HIRA (ENSCHAG00000026348)	GAK (ENSCHAG00000026455)	ENSCHAG00000026987	kctd10 (ENSCHAG00000026991)	MYO1H (ENSCHAG00000027006)	foxn4 (ENSCHAG00000027053)	ACACB (ENSCHAG00000027473)	SKIC3 (ENSCHAG00000027845)	ENSCHAG00000027852	arsk (ENSCHAG00000027853)	nfu1 (ENSCHAG00000027854)	dnase2 (ENSCHAG00000027856)	stambpb (ENSCHAG00000027857)	ENSCHAG00000027858 #18	ccn1l2 (ENSCHAG00000027859) ##22	ENSCHAG00000000233 ##23	slc2a11b (ENSCHAG00000000277)	ENSCHAG00000000455	slc2a11b (ENSCHAG00000000598)	gstt2 (ENSCHAG00000000731)	chek2 (ENSCHAG00000000974)	hscb (ENSCHAG00000001422)	rtn4r (ENSCHAG00000001444)	ENSCHAG00000001489	SCARF2 (ENSCHAG00000001821)	zgc:112294 (ENSCHAG00000001863)	CABP7 (ENSCHAG00000001885)	nf2a (ENSCHAG00000001980)	FBXO21 (ENSCHAG00000005307)	tesca (ENSCHAG00000005856)
Denticle herring	MODERN SPECIES	2	hdr (ENSDCDG00000031336)	hdr (ENSDCDG00000031327)	UNC5D (ENSDCDG00000031227)	ENSDCDG00000031211	tm2d2 (ENSDCDG00000031208)	ENSDCDG00000031206	lman2lb (ENSDCDG00000031201)	zgc:64051 (ENSDCDG00000031200)	araf (ENSDCDG00000031008)	imp4 (ENSDCDG00000030997)	RABL6 (ENSDCDG00000030989)	nfu1 (ENSDCDG00000030987)	dnase2 (ENSDCDG00000030985)	stambpb (ENSDCDG00000030983)	FKBP15 (ENSDCDG00000030964) #18	ccn1l2 (ENSDCDG00000030956) ##22	ENSDCDG00000030954 ##23	ENSDCDG00000030952	ENSDCDG00000030951	tubb2b (ENSDCDG00000030948) ##24	ENSDCDG00000030947 ##24	bcl2l16 (ENSDCDG00000030943)	ENSDCDG00000030938	ENSDCDG00000030936	ENSDCDG00000030935 ##24	ENSDCDG00000030933 ##24	ENSDCDG00000030932 ##24	ENSDCDG00000030930 ##24	fgf17 (ENSDCDG00000030929)	ENSDCDG00000030928	nr6a1a (ENSDCDG00000030925)
Otophysi	ANCESTRAL SPECIES	100	ENSGT00390000006980 #31	ENSGT00940000158797 #30	ENSGT00940000158865 #29	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a #28	ENSGT01070000253744.b.b.f #27	ENSGT00940000165492.a.a #26	ENSGT00390000020276.mb.b #25	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000164907.b.b #23	ENSGT00940000155151.a.a.b #22	ENSGT00940000164386 #21	ENSGT00390000006922 #20	ENSGT00930000151044 #19	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00940000160451 #12	ENSGT00940000154645.B #11	ENSGT00930000151016 #10	ENSGT00390000001195.a.b #9	ENSGT00940000159777 #8	ENSGT00940000155735.r	ENSGT00420000029890
Characiphysae	ANCESTRAL SPECIES	96				ENSGT00390000013948.a	ENSGT00390000014563.b	ENSGT00940000155648.A.a.b	ENSGT00390000003246	ENSGT00390000011010.a.a.t	ENSGT00940000163584.b.b	ENSGT00940000161253	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000157038.a.b	ENSGT00530000064712	ENSGT00940000153710.a.f	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.d ##24	ENSGT00940000167390	ENSGT01060000248575.B	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00950000182966.A.a.a.f	ENSGT00490000043388.a	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159352	ENSGT00940000177802	ENSGT00940000165894.a
Channel catfish	MODERN SPECIES	24	golga1 (ENSIPUG00000003330)	ARPC5L (ENSIPUG00000003371)	olfml2a (ENSIPUG00000003391)	pop5 (ENSIPUG00000003437)	rnf10 (ENSIPUG00000003468)	polr3d (ENSIPUG00000003480)	PHYHIP (ENSIPUG00000003490)	Gins4 (ENSIPUG00000003513)	ENSIPUG00000003539	dbnlb (ENSIPUG00000003577)	ube2d4 (ENSIPUG00000003650)	tcf7l1b (ENSIPUG00000003707)	ENSIPUG00000003728	stambp (ENSIPUG00000003740)	ENSIPUG00000003771 #18	ccn1l2 (ENSIPUG00000003879) ##22	ENSIPUG00000003903	ENSIPUG00000003912 ##23	fzd10 (ENSIPUG00000003951)	MR1 (ENSIPUG00000003966)	ENSIPUG00000003992	ENSIPUG00000003997	ENSIPUG00000004010	aplnr (ENSIPUG00000004015)	TBC1D10A (ENSIPUG00000004024)	Myl7 (ENSIPUG00000004044)	gck (ENSIPUG00000004068)	npc1l1 (ENSIPUG00000004087)	izumo1 (ENSIPUG00000004120)	Dusp2 (ENSIPUG00000004137)	adra2b (ENSIPUG00000004154)
Characiphysae_b	ANCESTRAL SPECIES	104					ENSGT00390000013948.a	ENSGT00390000014563.b	ENSGT00940000155648.A.a.b	ENSGT00390000003246	ENSGT00390000011010.a.a.t	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00940000157038.a.b	ENSGT00530000064712	ENSGT00940000153710.a.f	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.d ##24	ENSGT00940000167390	ENSGT01060000248575.B	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00950000182966.A.a.a.f	ENSGT00490000043388.a	ENSGT00390000012859	ENSGT00390000003878	ENSGT00940000159352	ENSGT00940000177802	ENSGT00940000165894.a
Electric eel	MODERN SPECIES	483				POLR3D (ENSEEEG00000012595)	PHYHIP (ENSEEEG00000012597)	ppp1r3c2b (ENSEEEG00000012598)	gins4 (ENSEEEG00000012599)	ENSEEEG00000012600	dbnlb (ENSEEEG00000012602)	ube2d4 (ENSEEEG00000012605)	tcf7l1b (ENSEEEG00000012818)	ENSEEEG00000012821	ENSEEEG00000012822	stambpb (ENSEEEG00000012823)	ENSEEEG00000012826 #18	ccn1l2 (ENSEEEG00000012901) ##22	ENSEEEG00000012951 ##23	bcl2l16 (ENSEEEG00000012954)	ENSEEEG00000012955 ##24	fgf17 (ENSEEEG00000012960)	ENSEEEG00000013033	nr5a1a (ENSEEEG00000013040)	nr6a1a (ENSEEEG00000013045)
Characoidei	ANCESTRAL SPECIES	210			ENSGT00390000013948.a	ENSGT00390000014563.b	ENSGT00940000155648.A.a.b	ENSGT00390000003246	ENSGT00390000011010.a.a.t	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b	ENSGT00940000160915	ENSGT00390000011010.a.a.s	ENSGT00940000156732.b	ENSGT00940000157038.a.b	ENSGT00530000064712	ENSGT00940000153710.a.f	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.d ##24	ENSGT00940000167390	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00950000182966.A.a.a.f	ENSGT00490000043388.a
Mexicana tetra	MODERN SPECIES	21	snap29 (ENSAMXG00000029405)	serpind1 (ENSAMXG00000015691)	pi4kab (ENSAMXG00000015625)	ENSAMXG00000031493	ppp1r3c2b (ENSAMXG00000032138)	gins4 (ENSAMXG00000005381)	COX5B (ENSAMXG00000034935)	arid5a (ENSAMXG00000005409)	dbnlb (ENSAMXG00000043945)	ube2d4 (ENSAMXG00000040988)	tcf7l1b (ENSAMXG00000005420)	ENSAMXG00000029114	stambpb (ENSAMXG00000005432)	FKBP15 (ENSAMXG00000005437) #18	ENSAMXG00000035935	ccn1l2 (ENSAMXG00000005447) ##22	ENSAMXG00000040491 ##23	bcl2l16 (ENSAMXG00000030617)	ENSAMXG00000040542 ##24	fgf17 (ENSAMXG00000042469)	ADGRD2 (ENSAMXG00000005477)	nr5a1a (ENSAMXG00000005494)	nr6a1a (ENSAMXG00000039712)	adra2b (ENSAMXG00000037029)	dusp2 (ENSAMXG00000043215)	ENSAMXG00000036421	NPC1L1 (ENSAMXG00000009702)	YKT6 (ENSAMXG00000038981)	gck (ENSAMXG00000034250)	myl7 (ENSAMXG00000015566)	TBC1D10A (ENSAMXG00000038599)
Red-bellied piranha	MODERN SPECIES	44	ENSPNAG00000022286	ENSPNAG00000022292	ENSPNAG00000022310	POLR3D (ENSPNAG00000022324)	PHYHIP (ENSPNAG00000022364)	ppp1r3c2b (ENSPNAG00000022377)	gins4 (ENSPNAG00000003720)	COX5B (ENSPNAG00000006304)	ENSPNAG00000022435	dbnlb (ENSPNAG00000022481)	ube2d4 (ENSPNAG00000022533)	tcf7l1b (ENSPNAG00000022603)	ENSPNAG00000022620	stambpb (ENSPNAG00000022656)	FKBP15 (ENSPNAG00000022690) #18	ccn1l2 (ENSPNAG00000022705) ##22	ENSPNAG00000022715 ##23	bcl2l16 (ENSPNAG00000022720)	tubb2b (ENSPNAG00000022749) ##24	fgf17 (ENSPNAG00000022793)
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000158865 #29	ENSGT00940000154886.a.b	ENSGT00940000154821.a.a #28	ENSGT01070000253744.b.b.f #27	ENSGT00940000165492.a.a #26	ENSGT00390000020276.mb.b #25	ENSGT00390000020276.mb.a ##25	ENSGT00940000154394.b.a.a.a.b.a.b ##24	ENSGT00940000154394.b.a.a.b.b.c.b ##24	ENSGT00940000164907.b.b #23	ENSGT00940000155151.a.a.b #22	ENSGT00940000164386 #21	ENSGT00390000006922 #20	ENSGT00930000151044 #19	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00940000160451 #12	ENSGT00940000154645.B #11	ENSGT00940000164697.b	ENSGT00530000064359.c.b.h	ENSGT00930000151016 #10	ENSGT00390000001195.a.b #9	ENSGT00940000159777 #8
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	202										ENSGT00940000156732.a.b.c	ENSGT00940000160915.v.b	ENSGT00940000157038.a.b.a.b	ENSGT00530000064712.c	ENSGT00940000153710.a.f.b	ENSGT00530000064286.m.a ##18	ENSGT00940000155151.a.a.a.a ##22	ENSGT00940000164907.b.a.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.d ##24	ENSGT00940000167390.f	ENSGT00940000161534.cc	ENSGT00940000153391.c.b.a.j.a.c	ENSGT00940000157936.p.a	ENSGT00940000157106.g.a.a	ENSGT00940000154663.a.a.b.a	ENSGT00390000001804.kb.b	ENSGT01090000260040.b.a.b.ab.a	ENSGT00390000012859.b	ENSGT00940000159352.c	ENSGT00940000165894.a.h	ENSGT00950000183125.b.a.a.a.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	96	ENSGT00940000158510.e	ENSGT00940000159152.d.m.b	ENSGT00940000159152.d.m.a	ENSGT00490000043388.a.d	ENSGT00390000013948.a.l	ENSGT00390000014563.b.d	ENSGT00940000155648.A.a.b.d.b	ENSGT00390000003246.e	ENSGT00940000163584.b.b.b	ENSGT00940000156732.a.b.c	ENSGT00940000160915.v.b	ENSGT00940000157038.a.b.a.b	ENSGT00530000064712.c	ENSGT00940000153710.a.f.b	ENSGT00530000064286.m.a ##18	ENSGT00940000155151.a.a.a.a ##22	ENSGT00940000164907.b.a.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.d ##24	ENSGT00940000167390.f	ENSGT00940000161534.cc	ENSGT00940000153391.c.b.a.j.a.c	ENSGT00940000157936.p.a	ENSGT00940000157106.g.a.a	ENSGT00940000154663.a.a.b.a	ENSGT00390000001804.kb.b	ENSGT01090000260040.b.a.b.ab.a	ENSGT00390000012859.b	ENSGT00940000159352.c	ENSGT00940000165894.a.h	ENSGT00950000183125.b.a.a.a.a.b.b
Golden-line barbel	MODERN SPECIES	559	ENSSGRG00000044743	ENSSGRG00000044742	ENSSGRG00000044739	POLR3D (ENSSGRG00000044735)	PHYHIP (ENSSGRG00000044731)	ppp1r3c2b (ENSSGRG00000044728)	gins4 (ENSSGRG00000044717)	COX5B (ENSSGRG00000044714)	arid5a (ENSSGRG00000044698)	dbnlb (ENSSGRG00000044685)	ube2d4 (ENSSGRG00000044240)	tcf7l1b (ENSSGRG00000043827)	ENSSGRG00000043821	stambpb (ENSSGRG00000043800)	FKBP15 (ENSSGRG00000043760) ##18	ccn1l2 (ENSSGRG00000043757) ##22	ENSSGRG00000043756 ##23	bcl2l16 (ENSSGRG00000043755)	tubb2b (ENSSGRG00000043754) ##24	fgf17 (ENSSGRG00000043753)
Common carp reference	MODERN SPECIES	23	ENSCCRG00000053282	vps13a (ENSCCRG00000061422)	ENSCCRG00000061158	ENSCCRG00000023560	ENSCCRG00000023553	ppp1r3c2b (ENSCCRG00000023551)	ENSCCRG00000023546	gins4 (ENSCCRG00000023549)	arid5a (ENSCCRG00000070583)	dbnlb (ENSCCRG00000075106)	ube2d4 (ENSCCRG00000078165)	tcf7l1b (ENSCCRG00000070159)	ENSCCRG00000081581	ENSCCRG00000034229	ENSCCRG00000051582 ##18	ccn1l2 (ENSCCRG00000022585) ##22	ENSCCRG00000069659 ##23	bcl2l16 (ENSCCRG00000064603)	tubb2b (ENSCCRG00000019887) ##24	fgf17 (ENSCCRG00000051614)	ADGRD2 (ENSCCRG00000014637)	nr5a1a (ENSCCRG00000014653)	nr6a1a (ENSCCRG00000014682)	ENSCCRG00000080399	ENSCCRG00000077837	ENSCCRG00000019167	ENSCCRG00000019282	ENSCCRG00000068108	ENSCCRG00000036590	ENSCCRG00000047245	ENSCCRG00000074516
Goldfish	MODERN SPECIES	48	ENSCARG00000028660	ENSCARG00000028662	RNF122 (ENSCARG00000030256)	ENSCARG00000030286	POLR3D (ENSCARG00000030301)	PHYHIP (ENSCARG00000030335)	ppp1r3c2b (ENSCARG00000030339)	gins4 (ENSCARG00000030345)	COX5B (ENSCARG00000030361)	dbnlb (ENSCARG00000030381)	ube2d4 (ENSCARG00000030644)	tcf7l1b (ENSCARG00000017055)	ENSCARG00000017503	ENSCARG00000017511	FKBP15 (ENSCARG00000017540) ##18	ccn1l2 (ENSCARG00000017689) ##22	ENSCARG00000017698 ##23	bcl2l16 (ENSCARG00000017713)	ENSCARG00000017722 ##24	fgf17 (ENSCARG00000017738)	ENSCARG00000017778	nr5a1a (ENSCARG00000017786)	nr6a1a (ENSCARG00000017819)	ENSCARG00000017848	ENSCARG00000017850	ENSCARG00000017860	pabpc1l (ENSCARG00000017880)	chmp4bb (ENSCARG00000017916)	ENSCARG00000017930	YWHAB (ENSCARG00000017971)	ENSCARG00000018005
Cyprininae	ANCESTRAL SPECIES	587			ENSGT00490000043388.a.d	ENSGT00390000013948.a.l	ENSGT00390000014563.b.d	ENSGT00940000155648.A.a.b.d.b	ENSGT00390000003246	ENSGT00390000011010.a.a.t	ENSGT00940000163584.b.b	ENSGT00940000156732.a.b.d	ENSGT00940000160915.v.a	ENSGT00940000157038.a.b.a.a	ENSGT00530000064712.d	ENSGT00940000153710.a.f.a	ENSGT00530000064286.m.b ##18	ENSGT00940000155151.a.a.a.b ##22	ENSGT00940000164907.b.a.b ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00940000167390.e
Goldfish	MODERN SPECIES	1616			vps13a (ENSCARG00000065194)	RNF122 (ENSCARG00000065183)	ENSCARG00000065155	POLR3D (ENSCARG00000065148)	PHYHIP (ENSCARG00000065143)	ppp1r3c2b (ENSCARG00000065139)	arid5a (ENSCARG00000065125)	dbnlb (ENSCARG00000065051)	ube2d4 (ENSCARG00000065020)	tcf7l1b (ENSCARG00000064329)	ENSCARG00000064298	stambpb (ENSCARG00000064270)	ENSCARG00000064217 ##18	ccn1l2 (ENSCARG00000064205) ##22	ENSCARG00000064184 ##23	ENSCARG00000064157	ENSCARG00000064128 ##24	fgf17 (ENSCARG00000064111)
Cyprininae_a	ANCESTRAL SPECIES	314			ENSGT00490000043388.a.c	ENSGT00390000013948.a.k	ENSGT00390000014563.b.c	ENSGT00940000155648.A.a.b.d.a	ENSGT00390000003246.f	ENSGT00390000011010.a.a.t	ENSGT00940000163584.b.b.a	ENSGT00940000156732.a.b.d	ENSGT00940000160915.v.a	ENSGT00940000157038.a.b.a.a	ENSGT00530000064712.d	ENSGT00940000153710.a.f.a	ENSGT00530000064286.m.b ##18	ENSGT00940000155151.a.a.a.b ##22	ENSGT00940000164907.b.a.b ##23	ENSGT00620000089226	ENSGT00940000153391.c.b.a.j.a.d	ENSGT00940000157936.p.b	ENSGT00940000157106.g.a.b	ENSGT00940000154663.a.a.a	ENSGT00390000001804.kb.a	ENSGT01090000260040.b.a.b.ab.b	ENSGT00940000154285.a.b.b.b.h.a	ENSGT00390000012859.a	ENSGT00390000003878.e	ENSGT00940000159352.d	ENSGT00940000165894.a.g	ENSGT00950000183125.b.a.a.a.a.b.a	ENSGT00940000156239.l
Common carp reference	MODERN SPECIES	17	vps13a (ENSCCRG00000077561)	ENSCCRG00000082861	ENSCCRG00000065869	ENSCCRG00000017598	ENSCCRG00000025452	ppp1r3c2b (ENSCCRG00000037668)	gins4 (ENSCCRG00000037672)	ENSCCRG00000073741	arid5a (ENSCCRG00000062873)	dbnlb (ENSCCRG00000064511)	ube2d4 (ENSCCRG00000053646)	tcf7l1b (ENSCCRG00000022613)	ENSCCRG00000081010	stambpb (ENSCCRG00000051595)	ENSCCRG00000051626 ##18	ccn1l2 (ENSCCRG00000053069) ##22	ENSCCRG00000051623 ##23	ENSCCRG00000066818	ENSCCRG00000059105 ##24	ADGRD2 (ENSCCRG00000022450)	ENSCCRG00000022458	nr6a1a (ENSCCRG00000022466)	ENSCCRG00000056958	ENSCCRG00000077469	ENSCCRG00000000226	ENSCCRG00000000281	ywhabb (ENSCCRG00000068705)	ENSCCRG00000022767	ENSCCRG00000082170	ENSCCRG00000017564	ENSCCRG00000040925
Golden-line barbel	MODERN SPECIES	890										tcf7l1b (ENSSGRG00000050650)	tcf7l1b (ENSSGRG00000050648)	ENSSGRG00000050646	stambpb (ENSSGRG00000050633)	ENSSGRG00000050630	ENSSGRG00000050586 ##18	ccn1l2 (ENSSGRG00000050582) ##22	ENSSGRG00000050581 ##23	ENSSGRG00000050580	ENSSGRG00000050570 ##24	fgf17 (ENSSGRG00000050560)	ADGRD2 (ENSSGRG00000050558)	nr5a1a (ENSSGRG00000050555)	nr6a1a (ENSSGRG00000050554)
Zebrafish	MODERN SPECIES	23	ENSDARG00000025013	vps13a (ENSDARG00000039225)	tcf7l1b (ENSDARG00000007369)	ube2d4 (ENSDARG00000015057)	dbnlb (ENSDARG00000016016)	arid5a (ENSDARG00000077120)	COX5B (ENSDARG00000113254)	gins4 (ENSDARG00000016044)	ppp1r3c2b (ENSDARG00000015657)	phyhip (ENSDARG00000116497)	ENSDARG00000102758	RNF122 (ENSDARG00000102075)	ENSDARG00000102599	stambpb (ENSDARG00000086906)	ENSDARG00000099294 #18	ccn1l2 (ENSDARG00000099985) ##22	ENSDARG00000103676 ##23	bcl2l16 (ENSDARG00000114237)	tubb2b (ENSDARG00000098591) ##24	fgf17 (ENSDARG00000102778)	ADGRD2 (ENSDARG00000103067)	nr5a1a (ENSDARG00000103176)	nr6a1a (ENSDARG00000101508)	ENSDARG00000096224	ENSDARG00000006577	nadka (ENSDARG00000098313)	wdr46 (ENSDARG00000095879)	ENSDARG00000076218	nr2c2 (ENSDARG00000042477)	mrps25 (ENSDARG00000041306)	RBSN (ENSDARG00000078215)
Euteleosteomorpha	ANCESTRAL SPECIES	15	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00390000020276 #25	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Protacanthopterygii	ANCESTRAL SPECIES	17	ENSGT00940000155742.a.a	ENSGT00930000151016 #10	ENSGT00940000153391.c.b.a.j.b	ENSGT00940000157419	ENSGT00940000159990	ENSGT00940000158540	ENSGT00940000156261	ENSGT00950000183101.a.b.b.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500 #16	ENSGT00900000141021.b.a.d #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.e.b ##24	ENSGT00940000165492.b ##26	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000165492.a.a #26	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276 #25	ENSGT00390000008042.B.o
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	54			ENSGT00940000157157.b.a.a.f	ENSGT00940000159838	ENSGT00940000155422.bb.a	ENSGT00940000166112.h	ENSGT00940000155275.c.b.b.f	ENSGT00940000156002.a.b.lb.a	ENSGT00940000159652.j	ENSGT01080000257442.d	ENSGT01080000257442.c.a	ENSGT00390000012665.i	ENSGT01100000263542.B.b.a.b.f	ENSGT00940000167390.d	ENSGT00530000064286.c.b #18	ENSGT00940000155151.a.a.a.c ##22	ENSGT00940000164907.b.a.d ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.a.e.b ##24	ENSGT00950000183101.a.b.b.a.a.j	ENSGT00940000158540.z.b	ENSGT01060000248575.C.c	ENSGT00940000161534.pb.a	ENSGT00940000153391.c.b.a.j.a.b	ENSGT00940000157936.k.b	ENSGT00940000157194.a	ENSGT00390000016384.l.b.a	ENSGT00390000016384.m	ENSGT00940000153772.B.l	ENSGT00550000074961.a.c	ENSGT00940000167067
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000156724.l	ENSGT00940000158199.k	ENSGT00940000157157.b.a.a.f	ENSGT00940000159838	ENSGT00940000155422.bb.a	ENSGT00940000166112.h	ENSGT00940000155275.c.b.b.f	ENSGT00940000156002.a.b.lb.a	ENSGT00940000159652.j	ENSGT01080000257442.d	ENSGT01080000257442.c.a	ENSGT00390000012665.i	ENSGT01100000263542.B.b.a.b.f	ENSGT00940000167390.d	ENSGT00530000064286.c.b #18	ENSGT00940000155151.a.a.a.c ##22	ENSGT00940000164907.b.a.d ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.b.a.a.a.a.b.b ##24	ENSGT00950000183101.a.b.b.a.a.j	ENSGT00940000158540.z.b	ENSGT01060000248575.C.c	ENSGT00940000161534.pb.a	ENSGT00940000153391.c.b.a.j.a.b	ENSGT00940000157936.k.b	ENSGT00940000157194.a	ENSGT00390000016384.l.b.a	ENSGT00390000016384.m	ENSGT00940000153772.B.l	ENSGT00550000074961.a.c	ENSGT00940000167067
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000010743.b.b.c	ENSGT00940000156724.l	ENSGT00940000158199.k	ENSGT00940000157157.b.a.a.f	ENSGT00940000159838	ENSGT00940000155422.bb.a	ENSGT00940000155275.c.b.b.f	ENSGT00940000156002.a.b.lb.a	ENSGT00940000159652.j	ENSGT01080000257442.d	ENSGT01080000257442.c.a	ENSGT00390000012665.i	ENSGT01100000263542.B.b.a.b.f	ENSGT00940000167390.d	ENSGT00530000064286.c.b #18	ENSGT00940000155151.a.a.a.c ##22	ENSGT00940000164907.b.a.d ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.b.a.a.a.a.b.b ##24	ENSGT00950000183101.a.b.b.a.a.j	ENSGT00940000158540.z.b	ENSGT00940000161534.pb.a	ENSGT00940000153391.c.b.a.j.a.b	ENSGT00940000157936.k.b	ENSGT00940000157194.a	ENSGT00390000016384.l.b.a	ENSGT00940000153772.B.l	ENSGT00550000074961.a.c	ENSGT00940000167067	ENSGT01000000215397.A.a	ENSGT00940000155841.c.a.e
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000156724.l	ENSGT00940000158199.k	ENSGT00940000157157.b.a.a.f	ENSGT00940000159838	ENSGT00940000155422.bb.a	ENSGT00940000166112.h	ENSGT00940000155275.c.b.b.f	ENSGT00940000156002.a.b.lb.a	ENSGT00940000159652.j	ENSGT01080000257442.d	ENSGT01080000257442.c.a	ENSGT00390000012665.i	ENSGT01100000263542.B.b.a.b.f	ENSGT00940000167390.d	ENSGT00530000064286.c.b #18	ENSGT00940000155151.a.a.a.c ##22	ENSGT00940000164907.b.a.d ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.b.a.a.a.b.a.a.a.a ##24	ENSGT00950000183136.b.a.a	ENSGT00940000160615.a.b	ENSGT00950000183101.a.b.b.a.a.j	ENSGT00940000158540.z.b	ENSGT00940000161534.pb.a	ENSGT00940000153391.c.b.a.j.a.b	ENSGT00940000157936.k.b	ENSGT00940000157194.a	ENSGT00390000016384.l.b.a	ENSGT00940000153772.B.l	ENSGT00550000074961.a.c	ENSGT00940000167067
Coho salmon	MODERN SPECIES	22	NOTCH1 (ENSOKIG00005000726)	dpp7 (ENSOKIG00005002064)	man1b1b (ENSOKIG00005002275)	ENSOKIG00005002293	ENSOKIG00005002302	cacna1ba (ENSOKIG00005003648)	ehmt1a (ENSOKIG00005028420)	ENSOKIG00005033359	ARRDC1 (ENSOKIG00005033365)	ENSOKIG00005033383	ENSOKIG00005033387	nelfb (ENSOKIG00005033416)	ENTPD2 (ENSOKIG00005034210)	ENSOKIG00005034323	FKBP15 (ENSOKIG00005034416) #18	ccn1l2 (ENSOKIG00005036321) ##22	ENSOKIG00005036347 ##23	bcl2l16 (ENSOKIG00005036390)	ENSOKIG00005036398 ##24	ENSOKIG00005036431	lhx2b (ENSOKIG00005036496)	ADGRD2 (ENSOKIG00005036523)	NR5A1 (ENSOKIG00005036595)	nr6a1a (ENSOKIG00005036775)	olfml2a (ENSOKIG00005036964)	RPL35 (ENSOKIG00005036982)	GOLGA1 (ENSOKIG00005037060)	PPP6C (ENSOKIG00005037163)	ENSOKIG00005037188	ENSOKIG00005037199	ENSOKIG00005037206
Chinook salmon	MODERN SPECIES	28	ENSOTSG00005037966	TRPM3 (ENSOTSG00005037968)	klf9 (ENSOTSG00005037970)	fam219ab (ENSOTSG00005037971)	ENSOTSG00005037976	bco2l (ENSOTSG00005037982)	ENSOTSG00005039320	LZTS1 (ENSOTSG00005000235)	PDE4D (ENSOTSG00005000243)	ENSOTSG00005000426	rchy1 (ENSOTSG00005000428)	ENSOTSG00005000432	ENSOTSG00005000435	fgf17 (ENSOTSG00005000438)	FKBP15 (ENSOTSG00005000457) #18	ccn1l2 (ENSOTSG00005005246) ##22	ENSOTSG00005005248 ##23	bcl2l16 (ENSOTSG00005005250)	ENSOTSG00005005251 ##24	ENSOTSG00005005253	ENSOTSG00005005254	ENSOTSG00005005255	ENSOTSG00005005256	MEX3C (ENSOTSG00005005259)	SMAD4 (ENSOTSG00005005261)	elac1 (ENSOTSG00005005263)	aptx (ENSOTSG00005005264)	me2 (ENSOTSG00005005270)	mapk4 (ENSOTSG00005006847)	tspan36 (ENSOTSG00005006869)	si:ch211-103n10.5 (ENSOTSG00005006870)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000009125	ENSOMYG00000068825	pmpca (ENSOMYG00000012088)	inpp5e (ENSOMYG00000013328)	ENSOMYG00000013769	dpp7 (ENSOMYG00000017676)	man1b1b (ENSOMYG00000017764)	cacna1ba (ENSOMYG00000018918)	ehmt1a (ENSOMYG00000043578)	ARRDC1 (ENSOMYG00000045458)	p2ry2 (ENSOMYG00000045470)	ENSOMYG00000045472	ENSOMYG00000045493	ENSOMYG00000045551	ENSOMYG00000045585 #18	ccn1l2 (ENSOMYG00000045649) ##22	ENSOMYG00000045655 ##23	bcl2l16 (ENSOMYG00000045660)	ENSOMYG00000045666 ##24	ENSOMYG00000048411	ENSOMYG00000045674	ADGRD2 (ENSOMYG00000045677)	NR5A1 (ENSOMYG00000045698)	nr6a1a (ENSOMYG00000045717)	OLFML2A (ENSOMYG00000045784)	RPL35 (ENSOMYG00000045792)	GOLGA1 (ENSOMYG00000045811)	ENSOMYG00000045867	ENSOMYG00000045876	ENSOMYG00000045895	ENSOMYG00000045923
Salmo	ANCESTRAL SPECIES		ENSGT00940000158199.k	ENSGT01100000264406.a	ENSGT00940000157157.b.a.a.f	ENSGT00940000159838	ENSGT00940000155422.bb.a	ENSGT00940000166112.h	ENSGT00940000155275.c.b.b.f	ENSGT00940000156002.a.b.lb.a	ENSGT00940000159652.j	ENSGT01080000257442.d	ENSGT01100000263537.b.a.b.e.b	ENSGT00390000012665.i	ENSGT01100000263542.B.b.a.b.f	ENSGT00940000167390.d	ENSGT00530000064286.c.b #18	ENSGT00940000155151.a.a.a.c ##22	ENSGT00940000164907.b.a.d ##23	ENSGT01090000260003.a.b.b.a.a.a.a	ENSGT00940000154394.b.a.a.a.a.b.b ##24	ENSGT00950000183101.a.b.b.a.a.j	ENSGT00940000158540.z.b	ENSGT01060000248575.C.c	ENSGT00940000161534.pb.a	ENSGT00940000153391.c.b.a.j.a.b	ENSGT00940000157936.k.b	ENSGT00940000157194.a	ENSGT00390000016384.m	ENSGT00940000153772.B.l	ENSGT00550000074961.a.c	ENSGT00940000165424.a.b.b.a	ENSGT00390000011466.e.a
River trout	MODERN SPECIES	19	ENSSTUG00000043517	notch1b (ENSSTUG00000039930)	dpp7 (ENSSTUG00000039633)	man1b1b (ENSSTUG00000039619)	ENSSTUG00000039610	ENSSTUG00000039602	cacna1ba (ENSSTUG00000029587)	ehmt1a (ENSSTUG00000028064)	ARRDC1 (ENSSTUG00000028005)	ENSSTUG00000027997	ENSSTUG00000027994	nelfb (ENSSTUG00000027637)	ENSSTUG00000027617	fgf17 (ENSSTUG00000027546)	FKBP15 (ENSSTUG00000025645) #18	ccn1l2 (ENSSTUG00000025569) ##22	ENSSTUG00000025557 ##23	bcl2l16 (ENSSTUG00000025552)	ENSSTUG00000025546 ##24	ENSSTUG00000025454	ENSSTUG00000025443	lhx2b (ENSSTUG00000025427)	ADGRD2 (ENSSTUG00000025388)	nr5a1a (ENSSTUG00000025342)	nr6a1a (ENSSTUG00000025026)	ENSSTUG00000025000	olfml2a (ENSSTUG00000024972)	RPL35 (ENSSTUG00000024943)	golga1 (ENSSTUG00000024853)	PPP6C (ENSSTUG00000024826)	ENSSTUG00000024818
Huchen	MODERN SPECIES	698			notch1b (ENSHHUG00000044684)	dpp7 (ENSHHUG00000045239)	man1b1b (ENSHHUG00000045266)	ENSHHUG00000045285	cacna1ba (ENSHHUG00000045289)	ehmt1a (ENSHHUG00000045332)	ARRDC1 (ENSHHUG00000045749)	ENSHHUG00000045755	ENSHHUG00000045758	nelfb (ENSHHUG00000045762)	ENSHHUG00000045839	fgf17 (ENSHHUG00000045843)	FKBP15 (ENSHHUG00000045851) #18	ccn1l2 (ENSHHUG00000045897) ##22	ENSHHUG00000045901 ##23	bcl2l16 (ENSHHUG00000045908)	tubb2b (ENSHHUG00000045913) ##24	CRB2 (ENSHHUG00000045925)
Salmoninae	ANCESTRAL SPECIES	134	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000165492.a.a #26	ENSGT00390000004692.d.a.n	ENSGT00980000199397.a	ENSGT00940000154394.b.a.b.q ##24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00940000160615.a.b	ENSGT00940000155373	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00390000011500.k #16	ENSGT00900000141021.b.a.d.e #15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.d #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.b #22	ENSGT00940000164907.b.b.d.a #23	ENSGT00940000154394.b.a.a.b.b #24	ENSGT00940000154394.b.a.b.q ##24	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00390000016526	ENSGT00940000160451 #12	ENSGT00940000167171	ENSGT00390000016384.l.a	ENSGT00940000158501.d.a.c	ENSGT00390000009566.g	ENSGT00550000074961.b.d	ENSGT00390000000224.j	ENSGT00530000063187.A.h	ENSGT00940000158674.h	ENSGT00940000153181.m.a
Salmo	ANCESTRAL SPECIES	58	ENSGT00950000182969.A.a.a.b	ENSGT00940000156868.h.d	ENSGT00390000010743.b.b.d	ENSGT00940000156724.k	ENSGT00940000158199.l	ENSGT00940000157157.b.a.a.e	ENSGT00940000155422.bb.b	ENSGT00940000155275.c.b.b.e	ENSGT00940000156002.a.b.lb.b	ENSGT00940000166440	ENSGT01100000263537.b.a.b.e.a	ENSGT00390000012665.j	ENSGT01100000263542.B.b.a.b.e	ENSGT00940000167390.c	ENSGT00530000064286.c.a #18	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226
River trout	MODERN SPECIES	39	krt1-c5 (ENSSTUG00000009475)	LHX6 (ENSSTUG00000009495)	PTGS1 (ENSSTUG00000009525)	pmpca (ENSSTUG00000010933)	inpp5e (ENSSTUG00000011860)	notch1b (ENSSTUG00000012059)	man1b1b (ENSSTUG00000018604)	cacna1ba (ENSSTUG00000018726)	ehmt1a (ENSSTUG00000021036)	arrdc1a (ENSSTUG00000021140)	ENSSTUG00000021145	nelfb (ENSSTUG00000021155)	ENTPD2 (ENSSTUG00000021428)	fgf17 (ENSSTUG00000021462)	FKBP15 (ENSSTUG00000021489) #18	ccn1l2 (ENSSTUG00000021631) ##22	ENSSTUG00000021644 ##23	ENSSTUG00000021665	ENSSTUG00000021681 ##24	ENSSTUG00000021692 #25	FPGS (ENSSTUG00000021783)	CRB2 (ENSSTUG00000023209)	lhx2b (ENSSTUG00000023228)	ENSSTUG00000023255	NR5A1 (ENSSTUG00000023289)	nr6a1a (ENSSTUG00000023380)	olfml2a (ENSSTUG00000023830)	ENSSTUG00000023842	RPL35 (ENSSTUG00000023853)	golga1 (ENSSTUG00000023883)	PPP6C (ENSSTUG00000024002)
Atlantic salmon	MODERN SPECIES	12	pgh1 (ENSSSAG00000006478)	ENSSSAG00000094072	pmpca (ENSSSAG00000065319)	inpp5e (ENSSSAG00000007762)	ENSSSAG00000007822	ENSSSAG00000008225	cacna1ba (ENSSSAG00000009555)	ENSSSAG00000098478	arrdc1a (ENSSSAG00000074053)	ENSSSAG00000106615	nelfb (ENSSSAG00000072439)	ENSSSAG00000118121	ENSSSAG00000098312	ENSSSAG00000074256	ENSSSAG00000074285 #18	ENSSSAG00000117780 ##22	ENSSSAG00000074498 #23	ENSSSAG00000074499	ENSSSAG00000117241 ##24	ENSSSAG00000074508 #25	ENSSSAG00000074529	ENSSSAG00000102406	ENSSSAG00000075255	ENSSSAG00000085026	ADGRD2 (ENSSSAG00000075294)	ENSSSAG00000100039	NR5A1 (ENSSSAG00000075313)	nr6a1a (ENSSSAG00000072271)	ENSSSAG00000096143	olfml2a (ENSSSAG00000075396)	RPL35 (ENSSSAG00000075399)
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00940000165787.a.b.eb	ENSGT00950000182969.A.a.a.b	ENSGT00940000156868.h.d	ENSGT00390000010743.b.b.d	ENSGT00940000156724.k	ENSGT00940000158199.l	ENSGT00940000157157.b.a.a.e	ENSGT00940000155422.bb.b	ENSGT00940000155275.c.b.b.e	ENSGT00940000166440	ENSGT01080000257442.c.b	ENSGT00390000012665.j	ENSGT01100000263542.B.b.a.b.e	ENSGT00940000167390.c	ENSGT00530000064286.c.a #18	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00950000183101.a.b.b.a.a.i	ENSGT00940000158540.z.a	ENSGT00940000161534.pb.b	ENSGT00940000153391.c.b.a.j.a.a	ENSGT00940000157936.k.a	ENSGT00940000157194.b	ENSGT00940000168933	ENSGT00390000016384.l.b.b	ENSGT00940000153772.B.k	ENSGT00550000074961.a.d	ENSGT00940000165424.a.b.b.b
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000049576	pmpca (ENSOMYG00000006347)	ENSOMYG00000048519	inpp5e (ENSOMYG00000007023)	ENSOMYG00000056878	ENSOMYG00000008306	man1b1b (ENSOMYG00000009283)	cacna1ba (ENSOMYG00000011876)	arrdc1a (ENSOMYG00000038634)	ENSOMYG00000038647	ENSOMYG00000038658	nelfb (ENSOMYG00000038706)	entpd2a.1 (ENSOMYG00000038734)	ENSOMYG00000038777	ENSOMYG00000039134 #18	ENSOMYG00000039622 ##22	ENSOMYG00000039634 ##23	ENSOMYG00000039656	ENSOMYG00000039709 ##24	ENSOMYG00000039750 #25	ENSOMYG00000039974	ENSOMYG00000040543	ftz-f1 (ENSOMYG00000040590)	ENSOMYG00000068514	NR6A1 (ENSOMYG00000040636)	olfml2a (ENSOMYG00000040641)	ENSOMYG00000040645	ENSOMYG00000076142	RPL35 (ENSOMYG00000055069)	ENSOMYG00000040657	GOLGA1 (ENSOMYG00000040675)
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00940000165787.a.b.eb	ENSGT00950000182969.A.a.a.b	ENSGT00940000156868.h.d	ENSGT00390000010743.b.b.d	ENSGT00940000156724.k	ENSGT00940000158199.l	ENSGT00940000157157.b.a.a.e	ENSGT00940000155422.bb.b	ENSGT00940000155275.c.b.b.e	ENSGT00940000166440	ENSGT01080000257442.c.b	ENSGT00390000012665.j	ENSGT01100000263542.B.b.a.b.e	ENSGT00940000167390.c	ENSGT00530000064286.c.a #18	ENSGT00940000155151.a.a.a.d ##22	ENSGT00940000164907.b.a.c ##23	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00390000020276.lb #25	ENSGT00950000183101.a.b.b.a.a.i	ENSGT00940000158540.z.a	ENSGT00940000161534.pb.b	ENSGT00940000153391.c.b.a.j.a.a	ENSGT00940000157936.k.a	ENSGT00940000157194.b	ENSGT00940000168933	ENSGT00390000016384.l.b.b	ENSGT00940000153772.B.k	ENSGT00550000074961.a.d	ENSGT00940000165424.a.b.b.b	ENSGT01000000215397.A.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2549																ccn1l2 (ENSOTSG00005018790) ##22
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005010957	krt1-c5 (ENSOTSG00005010954)	LHX6 (ENSOTSG00005010952)	PTGS1 (ENSOTSG00005010939)	ENSOTSG00005010937	pmpca (ENSOTSG00005009796)	inpp5e (ENSOTSG00005009781)	notch1b (ENSOTSG00005009635)	man1b1b (ENSOTSG00005046690)	cacna1ba (ENSOTSG00005045082)	arrdc1a (ENSOTSG00005045057)	nelfb (ENSOTSG00005044540)	ENTPD2 (ENSOTSG00005044538)	fgf17 (ENSOTSG00005044537)	FKBP15 (ENSOTSG00005044042) #18	ccn1l2 (ENSOTSG00005044034) ##22	ENSOTSG00005044033 ##23	ENSOTSG00005044031 ##24	ENSOTSG00005044025 #25	ENSOTSG00005043734	lhx2b (ENSOTSG00005043733)	ADGRD2 (ENSOTSG00005043732)	nr5a1a (ENSOTSG00005043720)	ENSOTSG00005043718	nr6a1a (ENSOTSG00005043717)	olfml2a (ENSOTSG00005043714)	ENSOTSG00005043712	RPL35 (ENSOTSG00005043711)	golga1 (ENSOTSG00005043710)	ENSOTSG00005043709	ENSOTSG00005043708
Coho salmon	MODERN SPECIES	28	ENSOKIG00005050409	krt1-c5 (ENSOKIG00005050397)	LHX6 (ENSOKIG00005050386)	PTGS1 (ENSOKIG00005050217)	pmpca (ENSOKIG00005050081)	inpp5e (ENSOKIG00005050049)	notch1b (ENSOKIG00005049913)	MAN1B1 (ENSOKIG00005049871)	cacna1ba (ENSOKIG00005047148)	arrdc1a (ENSOKIG00005046737)	ENSOKIG00005046731	nelfb (ENSOKIG00005046649)	ENTPD2 (ENSOKIG00005046613)	fgf17 (ENSOKIG00005046602)	FKBP15 (ENSOKIG00005046028) #18	ENSOKIG00005045974 ##22	ENSOKIG00005045969 ##23	ENSOKIG00005045958 ##24	ENSOKIG00005045953 #25	ENSOKIG00005045302	LHX2 (ENSOKIG00005045190)	ADGRD2 (ENSOKIG00005045172)	nr5a1a (ENSOKIG00005045103)	nr6a1a (ENSOKIG00005044956)	olfml2a (ENSOKIG00005044924)	ENSOKIG00005044913	RPL35 (ENSOKIG00005044889)	golga1 (ENSOKIG00005044844)	PPP6C (ENSOKIG00005044835)	ENSOKIG00005044831	ENSOKIG00005044822
Huchen	MODERN SPECIES	981				notch1b (ENSHHUG00000035560)	man1b1b (ENSHHUG00000035597)	cacna1ba (ENSHHUG00000035635)	ENSHHUG00000035666	ENSHHUG00000035674	ENSHHUG00000035686	ENSHHUG00000035700	ENSHHUG00000035702	nelfb (ENSHHUG00000035705)	ENTPD2 (ENSHHUG00000035881)	fgf17 (ENSHHUG00000035891)	FKBP15 (ENSHHUG00000035913) #18	ccn1l2 (ENSHHUG00000036086) ##22	ENSHHUG00000036096 ##23	ENSHHUG00000036104	tubb2b (ENSHHUG00000036114) ##24	ENSHHUG00000036372 #25
Northern pike	MODERN SPECIES	12	ENSELUG00000032479	krt1-c5 (ENSELUG00000002169)	LHX6 (ENSELUG00000002165)	ENSELUG00000002162	pmpca (ENSELUG00000002154)	inpp5e (ENSELUG00000002148)	notch1b (ENSELUG00000002143)	dpp7 (ENSELUG00000002133)	man1b1b (ENSELUG00000002128)	cacna1ba (ENSELUG00000002116)	ENSELUG00000002101	ENSELUG00000002099	nelfb (ENSELUG00000002087)	fgf17 (ENSELUG00000002082)	ENSELUG00000002078 #18	ccn1l2 (ENSELUG00000002050) ##22	ENSELUG00000002048 ##23	bcl2l16 (ENSELUG00000002045)	tubb2b (ENSELUG00000002042) ##24	ENSELUG00000002037 ##26	FPGS (ENSELUG00000002033)	CRB2 (ENSELUG00000002023)	lhx2b (ENSELUG00000000056)	ADGRD2 (ENSELUG00000002011)	nr5a1a (ENSELUG00000002007)	nr6a1a (ENSELUG00000002004)	olfml2a (ENSELUG00000002000)	RL35 (ENSELUG00000001990)	PPP6C (ENSELUG00000001963)	ENSELUG00000001961	ENSELUG00000001960
Acanthomorphata	ANCESTRAL SPECIES	46	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00390000020276 #25	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171	ENSGT01060000248544.b
Euacanthomorphacea	ANCESTRAL SPECIES	81	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000179831	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.a.a.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT01060000248544.b
Zig-zag eel	MODERN SPECIES	23	ENSMAMG00000018410	ENSMAMG00000026880	ENSMAMG00000027013	ptar1 (ENSMAMG00000018436)	ENSMAMG00000018471	ENTREP1 (ENSMAMG00000018522)	ENSMAMG00000018534	cacna1ba (ENSMAMG00000018547)	ENSMAMG00000018630	arrdc1a (ENSMAMG00000018649)	ENSMAMG00000018652	nelfb (ENSMAMG00000018660)	ENSMAMG00000018679	ENSMAMG00000018696	ENSMAMG00000018712 #18	ENSMAMG00000018738 ##22	ENSMAMG00000018745	ENSMAMG00000024865 ##23	ENSMAMG00000018796	ENSMAMG00000028722 ##24	ENSMAMG00000018806	ENSMAMG00000018972	ENSMAMG00000018974	ENSMAMG00000018991	NR5A1 (ENSMAMG00000018995)	NR6A1 (ENSMAMG00000019017)	OLFML2A (ENSMAMG00000019044)	ENSMAMG00000019066	RPL35 (ENSMAMG00000019074)	GOLGA1 (ENSMAMG00000019096)	PPP6C (ENSMAMG00000019206)
Anabantoidei	ANCESTRAL SPECIES	4					ENSGT00940000155305.b.a	ENSGT00940000155127.a.b	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000162514	ENSGT01060000248544.b
Climbing perch	MODERN SPECIES	22			ENSATEG00000008992	stxbp1b (ENSATEG00000009081)	noxa1 (ENSATEG00000030091)	man1b1b (ENSATEG00000009156)	dpp7 (ENSATEG00000009170)	cacna1ba (ENSATEG00000009195)	ehmt1a (ENSATEG00000026279)	arrdc1a (ENSATEG00000009354)	nelfb (ENSATEG00000009371)	ENSATEG00000027081	ENSATEG00000028984	ENSATEG00000009489	ENSATEG00000009511 #18	ccn1l2 (ENSATEG00000009534) ##22	ENSATEG00000009539 ##23	tubb2b (ENSATEG00000009569) ##24	ENSATEG00000009615 ##26	ENSATEG00000009601	ENSATEG00000009637	ENSATEG00000009870	ADGRD2 (ENSATEG00000009895)	NR5A1 (ENSATEG00000009916)	nr6a1a (ENSATEG00000025519)	OLFML2A (ENSATEG00000009973)	ENSATEG00000009979	RPL35 (ENSATEG00000009996)	GOLGA1 (ENSATEG00000010023)	PPP6C (ENSATEG00000010159)	ENSATEG00000010225
Carangaria	ANCESTRAL SPECIES	25	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171
Carangaria_A	ANCESTRAL SPECIES	50								ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000171469	ENSGT00940000155841.c.a
Seriola	ANCESTRAL SPECIES	7	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000155422.bb	ENSGT00940000159838	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171	ENSGT01060000248544.b
Greater amberjack	MODERN SPECIES	6	niban2b (ENSSDUG00000009785)	stxbp1b (ENSSDUG00000009815)	WHRN (ENSSDUG00000009865)	noxa1 (ENSSDUG00000009900)	man1b1b (ENSSDUG00000009927)	dpp7 (ENSSDUG00000009953)	cacna1ba (ENSSDUG00000009992)	ENSSDUG00000010101	ENSSDUG00000010115	ENSSDUG00000010136	arrdc1a (ENSSDUG00000010155)	nelfb (ENSSDUG00000010179)	entpd2a.1 (ENSSDUG00000010214)	fgf17 (ENSSDUG00000010245)	FKBP15 (ENSSDUG00000010366) #18	ccn1l2 (ENSSDUG00000010401) ##22	ENSSDUG00000010418 ##23	tubb2b (ENSSDUG00000010437) ##24	ENSSDUG00000010468	ENSSDUG00000010476 #25	ENSSDUG00000010516	lhx2b (ENSSDUG00000010678)	ENSSDUG00000010699	fzd1 (ENSSDUG00000010707)	cdk14 (ENSSDUG00000010726)	ENSSDUG00000010823	ENSSDUG00000010833	ENSSDUG00000010846	ENSSDUG00000010860	ENSSDUG00000010886	ENSSDUG00000010900
Yellowtail amberjack	MODERN SPECIES	3287	ENSSLDG00000010129	niban2b (ENSSLDG00000010082)	stxbp1b (ENSSLDG00000009926)	WHRN (ENSSLDG00000009864)	noxa1 (ENSSLDG00000009832)	man1b1b (ENSSLDG00000009801)	dpp7 (ENSSLDG00000009771)	cacna1ba (ENSSLDG00000009661)	ENSSLDG00000009598	ENSSLDG00000009572	arrdc1a (ENSSLDG00000009550)	nelfb (ENSSLDG00000009508)	entpd2a.1 (ENSSLDG00000009096)	fgf17 (ENSSLDG00000009011)	FKBP15 (ENSSLDG00000008939) #18	ccn1l2 (ENSSLDG00000008922) ##22	ENSSLDG00000008908 ##23	ENSSLDG00000008862	tubb2b (ENSSLDG00000008880) ##24	ENSSLDG00000008854 ##26	CRB2 (ENSSLDG00000008823)	lhx2b (ENSSLDG00000008803)	ENSSLDG00000008774	nr5a1a (ENSSLDG00000008750)	nr6a1a (ENSSLDG00000008702)	olfml2a (ENSSLDG00000008632)	ENSSLDG00000008604	rpl35 (ENSSLDG00000008581)	golga1 (ENSSLDG00000008465)	PPP6C (ENSSLDG00000008421)	ENSSLDG00000008397
Barramundi perch	MODERN SPECIES	95	ENSLCAG00010024493	imp4 (ENSLCAG00010024496)	araf (ENSLCAG00010024507)	zgc:64051 (ENSLCAG00010024524)	dph7 (ENSLCAG00010024530)	mrpl41 (ENSLCAG00010024534)	PNPLA7 (ENSLCAG00010024578)	cacna1ba (ENSLCAG00010025823)	ehmt1a (ENSLCAG00010027055)	arrdc1a (ENSLCAG00010027129)	ENSLCAG00010027136	nelfb (ENSLCAG00010027153)	entpd2a.1 (ENSLCAG00010027167)	fgf17 (ENSLCAG00010027172)	ENSLCAG00010027194	ccn1l2 (ENSLCAG00010027198) ##22	ENSLCAG00010027204 ##23	ENSLCAG00010027206	tubb2b (ENSLCAG00010027211) ##24	ENSLCAG00010027216 #25	FPGS (ENSLCAG00010027220)	ENSLCAG00010027224	lhx2b (ENSLCAG00010027228)	ENSLCAG00010027230	nr5a1a (ENSLCAG00010027244)	nr6a1a (ENSLCAG00010027256)	olfml2a (ENSLCAG00010027266)	ENSLCAG00010027272	golga1 (ENSLCAG00010027286)	ENSLCAG00010027294	PPP6C (ENSLCAG00010027298)
Pleuronectoidei	ANCESTRAL SPECIES	78	ENSGT00940000161618	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24
Turbot	MODERN SPECIES	21	ENSSMAG00000022435	niban2b (ENSSMAG00000018110)	stxbp1b (ENSSMAG00000018190)	ENSSMAG00000029999	noxa1 (ENSSMAG00000018334)	dpp7 (ENSSMAG00000018364)	man1b1b (ENSSMAG00000018382)	ENSSMAG00000022563	cacna1ba (ENSSMAG00000018457)	ehmt1a (ENSSMAG00000018567)	arrdc1a (ENSSMAG00000018601)	nelfb (ENSSMAG00000018618)	entpd2a.1 (ENSSMAG00000018667)	ENSSMAG00000018684	ENSSMAG00000018701 #18	ccn1l2 (ENSSMAG00000018753) ##22	ENSSMAG00000021737 ##23	ENSSMAG00000024448	tubb2b (ENSSMAG00000015089) ##24	ENSSMAG00000001486 ##24	ENSSMAG00000018774	ENSSMAG00000037626	hps4 (ENSSMAG00000018784)	cox6a1 (ENSSMAG00000031457)	asgrl1 (ENSSMAG00000018795)	ENSSMAG00000037817	prkab1b (ENSSMAG00000018809)	msi1b (ENSSMAG00000018824)	hnf1a (ENSSMAG00000018841)	ENSSMAG00000018853	unc119.1 (ENSSMAG00000009069)
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000162514
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000171469
European seabass	MODERN SPECIES	13	ENSDLAG00005001695	niban2b (ENSDLAG00005001803)	stxbp1b (ENSDLAG00005003534)	ENSDLAG00005003717	noxa1 (ENSDLAG00005003737)	dpp7 (ENSDLAG00005003764)	man1b1b (ENSDLAG00005003943)	ENSDLAG00005026590	cacna1ba (ENSDLAG00005004861)	ehmt1a (ENSDLAG00005019593)	ENSDLAG00005020342	nelfb (ENSDLAG00005020349)	entpd2a.1 (ENSDLAG00005020413)	ENSDLAG00005027557	ENSDLAG00005020475 #18	ccn1l2 (ENSDLAG00005030907) ##22	ENSDLAG00005030282 ##23	ENSDLAG00005020893	tubb2b (ENSDLAG00005028428) ##24	ENSDLAG00005020898 ##26	ENSDLAG00005020905	ENSDLAG00005028139	ENSDLAG00005034611	ADGRD2 (ENSDLAG00005020947)	NR5A1 (ENSDLAG00005020977)	nr6a1a (ENSDLAG00005021108)	OLFML2A (ENSDLAG00005021279)	ENSDLAG00005033531	ENSDLAG00005021295	GOLGA1 (ENSDLAG00005021316)	ENSDLAG00005031828
Large yellow croaker	MODERN SPECIES	2	rab35b (ENSLCRG00005020452)	ENSLCRG00005020450	GCN1 (ENSLCRG00005020428)	vamp5 (ENSLCRG00005020419)	noxa1 (ENSLCRG00005020416)	dpp7 (ENSLCRG00005020403)	man1b1b (ENSLCRG00005020341)	cacna1ba (ENSLCRG00005006563)	ehmt1a (ENSLCRG00005003960)	arrdc1a (ENSLCRG00005003945)	ENSLCRG00005003944	nelfb (ENSLCRG00005003932)	entpd2a.1 (ENSLCRG00005003930)	fgf17 (ENSLCRG00005003929)	FKBP15 (ENSLCRG00005001899) #18	ccn1l2 (ENSLCRG00005001696) ##22	ENSLCRG00005001686 ##23	ENSLCRG00005001680 ##24	ENSLCRG00005001675	ENSLCRG00005001629 ##24	ENSLCRG00005001622 ##26	ENSLCRG00005001607	lhx2b (ENSLCRG00005001597)	ADGRD2 (ENSLCRG00005001548)	nr5a1a (ENSLCRG00005020785)	nr6a1a (ENSLCRG00005020780)	olfml2a (ENSLCRG00005020778)	ENSLCRG00005020776	rpl35 (ENSLCRG00005020775)	golga1 (ENSLCRG00005020762)	PPP6C (ENSLCRG00005020759)
Gilthead seabream	MODERN SPECIES	19	noxa1 (ENSSAUG00010017584)	dpp7 (ENSSAUG00010017585)	man1b1b (ENSSAUG00010017591)	ENSSAUG00010017592	ENSSAUG00010017593	cacna1ba (ENSSAUG00010017740)	ENSSAUG00010026316	ehmt1a (ENSSAUG00010026321)	ENSSAUG00010026451	arrdc1a (ENSSAUG00010026452)	ENSSAUG00010026453	nelfb (ENSSAUG00010026454)	entpd2a.1 (ENSSAUG00010026455)	fgf17 (ENSSAUG00010026626)	FKBP15 (ENSSAUG00010026469) #18	ccn1l2 (ENSSAUG00010026627) ##22	ENSSAUG00010026628 ##23	ENSSAUG00010026629	ENSSAUG00010026630 ##24	ENSSAUG00010026632 ##26	ENSSAUG00010026634	lhx2b (ENSSAUG00010004073)	ENSSAUG00010004097	ADGRD2 (ENSSAUG00010004139)	nr5a1a (ENSSAUG00010004224)	nr6a1a (ENSSAUG00010004453)	olfml2a (ENSSAUG00010004462)	ENSSAUG00010004465	rpl35 (ENSSAUG00010004470)	PPP6C (ENSSAUG00010004488)	ENSSAUG00010004491
Perciformes	ANCESTRAL SPECIES	33	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Perciformes_a	ANCESTRAL SPECIES	31	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b
Pike perch	MODERN SPECIES	16	niban2b (ENSSLUG00000011260)	stxbp1b (ENSSLUG00000011182)	ENSSLUG00000011170	noxa1 (ENSSLUG00000011166)	dpp7 (ENSSLUG00000011139)	man1b1b (ENSSLUG00000011026)	ENSSLUG00000011004	cacna1ba (ENSSLUG00000010977)	ehmt1a (ENSSLUG00000005703)	arrdc1a (ENSSLUG00000005377)	ENSSLUG00000005370	nelfb (ENSSLUG00000005333)	entpd2a.1 (ENSSLUG00000005304)	fgf17 (ENSSLUG00000005289)	FKBP15 (ENSSLUG00000005202) #18	ccn1l2 (ENSSLUG00000005178) ##22	ENSSLUG00000005171 ##23	ENSSLUG00000005161	ENSSLUG00000023950 ##24	ENSSLUG00000023910 ##26	ENSSLUG00000023894	lhx2b (ENSSLUG00000023891)	ADGRD2 (ENSSLUG00000023884)	nr5a1a (ENSSLUG00000023874)	nr6a1a (ENSSLUG00000023866)	olfml2a (ENSSLUG00000023860)	ENSSLUG00000023854	atad1a (ENSSLUG00000023848)	ENSSLUG00000023816	piwil2 (ENSSLUG00000021186)	ENSSLUG00000021040
Channel bull blenny	MODERN SPECIES	23	niban2b (ENSCGOG00000005317)	stxbp1b (ENSCGOG00000004188)	WHRN (ENSCGOG00000004113)	noxa1 (ENSCGOG00000004061)	dpp7 (ENSCGOG00000011238)	man1b1b (ENSCGOG00000011214)	ENSCGOG00000011203 ##24	ENSCGOG00000011198	ENSCGOG00000011194	ehmt1a (ENSCGOG00000011001)	arrdc1a (ENSCGOG00000010987)	nelfb (ENSCGOG00000010747)	entpd2a.1 (ENSCGOG00000010739)	fgf17 (ENSCGOG00000010697)	FKBP15 (ENSCGOG00000010671) #18	ccn1l2 (ENSCGOG00000010662) ##22	ENSCGOG00000010655 ##23	ENSCGOG00000010636	tubb2b (ENSCGOG00000010642) ##24	ENSCGOG00000010608 ##26	ENSCGOG00000010599	lhx2b (ENSCGOG00000010594)	ENSCGOG00000010589	nr5a1a (ENSCGOG00000010466)	olfml2a (ENSCGOG00000010452)	ENSCGOG00000010449	rpl35 (ENSCGOG00000010439)	golga1 (ENSCGOG00000010391)	PPP6C (ENSCGOG00000010385)	ENSCGOG00000010383	ENSCGOG00000010381
Cottioidei	ANCESTRAL SPECIES	63				ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000165424.a.b.b	ENSGT01060000248544.b
Lumpfish	MODERN SPECIES	24	SNX18 (ENSCLMG00005016768)	ENSCLMG00005016769	ENSCLMG00005016772	stxbp1b (ENSCLMG00005016783)	WHRN (ENSCLMG00005016786)	noxa1 (ENSCLMG00005016790)	dpp7 (ENSCLMG00005016799)	man1b1b (ENSCLMG00005016953)	cacna1ba (ENSCLMG00005016965)	ehmt1a (ENSCLMG00005016997)	arrdc1a (ENSCLMG00005017808)	nelfb (ENSCLMG00005017813)	entpd2a.1 (ENSCLMG00005017836)	fgf17 (ENSCLMG00005017838)	FKBP15 (ENSCLMG00005017983) #18	ccn1l2 (ENSCLMG00005018003) ##22	ENSCLMG00005018004 ##23	ENSCLMG00005018007	tubb2b (ENSCLMG00005018010) ##24	ENSCLMG00005018016 ##26	ENSCLMG00005018046	lhx2b (ENSCLMG00005018059)	ENSCLMG00005018060	nr5a1a (ENSCLMG00005018062)	nr6a1a (ENSCLMG00005018098)	OLFML2A (ENSCLMG00005018104)	ENSCLMG00005018105	tcima (ENSCLMG00005018107)	fam151b (ENSCLMG00005018109)	KLHL10 (ENSCLMG00005000128)	ENSCLMG00005000136
Stickleback	MODERN SPECIES	12					stxbp1b (ENSGACG00000003228)	WHRN (ENSGACG00000003297)	ENSGACG00000003309	dpp7 (ENSGACG00000003313)	man1b1b (ENSGACG00000003326)	cacna1ba (ENSGACG00000003335)	ehmt1a (ENSGACG00000003353)	arrdc1a (ENSGACG00000003366)	nelfb (ENSGACG00000003381)	fgf17 (ENSGACG00000003432)	FKBP15 (ENSGACG00000003433) #18	ccn1l2 (ENSGACG00000003446) ##22	ENSGACG00000003456 ##23	tubb2b (ENSGACG00000003471) ##24	ENSGACG00000003503 ##26	ENSGACG00000003512	lhx2b (ENSGACG00000003520)	nr5a1a (ENSGACG00000003539)	nr6a1a (ENSGACG00000003560)	olfml2a (ENSGACG00000003569)	rpl35 (ENSGACG00000003574)	golga1 (ENSGACG00000003576)	PPP6C (ENSGACG00000003583)	ENSGACG00000003617	ENSGACG00000003618	sh3glb2a (ENSGACG00000003622)	dph7 (ENSGACG00000003634)
Ballan wrasse	MODERN SPECIES	238															ENSLBEG00000028755	ccn1l2 (ENSLBEG00000028754) ##22	ENSLBEG00000028752 ##23	ENSLBEG00000028749	tubb2b (ENSLBEG00000028751) ##24	ENSLBEG00000028748 ##26	ENSLBEG00000028746	lhx2b (ENSLBEG00000028745)	ENSLBEG00000028743	ADGRD2 (ENSLBEG00000028742)	nr5a1a (ENSLBEG00000028740)	nr6a1a (ENSLBEG00000028739)	olfml2a (ENSLBEG00000028738)	ENSLBEG00000028736	rpl35 (ENSLBEG00000028735)	golga1 (ENSLBEG00000028734)	PPP6C (ENSLBEG00000028732)
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a
Ovalentaria_B	ANCESTRAL SPECIES	9										ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000167171
Pomacentridae	ANCESTRAL SPECIES	162										ENSGT00940000155127.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759
Pomacentridae_A	ANCESTRAL SPECIES	170								ENSGT00940000163587.a.b.b.f	ENSGT00550000074961.a	ENSGT00940000155127.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759
Amphiprion	ANCESTRAL SPECIES	200								ENSGT00940000163587.a.b.b.f	ENSGT00550000074961.a	ENSGT00940000155127.a.b	ENSGT00940000166440	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759
Orange clownfish	MODERN SPECIES	19	ENSAPEG00000016695	ENSAPEG00000016118	ENSAPEG00000015809	ENSAPEG00000015593	ENSAPEG00000015473	ENSAPEG00000015337	ENSAPEG00000015310	ENSAPEG00000015287	PPP6C (ENSAPEG00000015262)	stxbp1b (ENSAPEG00000015131)	arrdc1a (ENSAPEG00000015114)	nelfb (ENSAPEG00000015068)	entpd2a.1 (ENSAPEG00000015050)	fgf17 (ENSAPEG00000015027)	FKBP15 (ENSAPEG00000014994) #18	ccn1l2 (ENSAPEG00000014948) ##22	ENSAPEG00000014925 ##23	ENSAPEG00000014882	tubb2b (ENSAPEG00000014896) ##24	ENSAPEG00000014825 ##26	ENSAPEG00000014566	lhx2b (ENSAPEG00000014488)	ENSAPEG00000014429	nr5a1a (ENSAPEG00000014395)	nr6a1a (ENSAPEG00000014356)	olfml2a (ENSAPEG00000014334)	ENSAPEG00000014304	ENSAPEG00000014276	ENSAPEG00000014221	cacna1ba (ENSAPEG00000014062)	paxx (ENSAPEG00000014017)
Clown anemonefish	MODERN SPECIES	669												nelfb (ENSAOCG00000012396)	entpd2a.1 (ENSAOCG00000012429)	fgf17 (ENSAOCG00000012451)	FKBP15 (ENSAOCG00000012526) #18	ccn1l2 (ENSAOCG00000000771) ##22	ENSAOCG00000012609 ##23	ENSAOCG00000012635	tubb2b (ENSAOCG00000012623) ##24	ENSAOCG00000012672 ##26	ENSAOCG00000012923	lhx2b (ENSAOCG00000012997)
Spiny chromis	MODERN SPECIES	968								ENSAPOG00000017332	PPP6C (ENSAPOG00000017323)	stxbp1b (ENSAPOG00000017279)	arrdc1a (ENSAPOG00000016908)	nelfb (ENSAPOG00000016902)	ENTPD2 (ENSAPOG00000016840)	fgf17 (ENSAPOG00000016823)	ENSAPOG00000016783 #18	ccn1l2 (ENSAPOG00000016732) ##22	ENSAPOG00000000765 ##23
Bicolor damselfish	MODERN SPECIES	322	ENSSPAG00000001413	ENSSPAG00000001373	ENSSPAG00000001348	ENSSPAG00000001338	ENSSPAG00000001312	ABCA2 (ENSSPAG00000001120)	FUT7 (ENSSPAG00000001102)	ENSSPAG00000001091	niban2b (ENSSPAG00000001009)	stxbp1b (ENSSPAG00000000938)	arrdc1a (ENSSPAG00000000897)	nelfb (ENSSPAG00000000848)	ENTPD2 (ENSSPAG00000000830)	fgf17 (ENSSPAG00000000815)	FKBP15 (ENSSPAG00000000799) #18	ccn1l2 (ENSSPAG00000000778) ##22	ENSSPAG00000000752 ##23	ENSSPAG00000000715	tubb2b (ENSSPAG00000000729) ##24	ENSSPAG00000000700	ENSSPAG00000000668 ##26	ENSSPAG00000000525
Cichlidae	ANCESTRAL SPECIES	29										ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000178161	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	37										ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000178161	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	28	ENSGT00950000183078.b.b	ENSGT00390000016767	ENSGT00390000004796	ENSGT00940000158044.a	ENSGT00940000154389.b	ENSGT00530000063723.a	ENSGT00900000143393	ENSGT00390000015977	ENSGT00940000155794.h.g.b.a.a.a.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000159838
Lyretail cichlid	MODERN SPECIES	382													ENTPD2 (ENSNBRG00000011023)	fgf17 (ENSNBRG00000011007)	FKBP15 (ENSNBRG00000010885) #18	ccn1l2 (ENSNBRG00000010788) ##22	ENSNBRG00000010766 ##23	ENSNBRG00000010749	tubb2b (ENSNBRG00000010731) ##24	ENSNBRG00000010715	ENSNBRG00000010700	lhx2b (ENSNBRG00000010642)	ENSNBRG00000010591	nr5a1a (ENSNBRG00000010564)	nr6a1a (ENSNBRG00000010537)	olfml2a (ENSNBRG00000010522)	ENSNBRG00000010505	rpl35 (ENSNBRG00000010485)	golga1 (ENSNBRG00000010429)	PPP6C (ENSNBRG00000010420)	dpp7 (ENSNBRG00000010388)
Haplochromini	ANCESTRAL SPECIES	30	ENSGT00950000183078.b.b	ENSGT00390000016767	ENSGT00390000004796	ENSGT00940000158044.a	ENSGT00940000154389.b	ENSGT00530000063723.a	ENSGT00900000143393	ENSGT00390000015977	ENSGT00940000155794.h.g.b.a.a.a.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000159838
Burton s mouthbrooder	MODERN SPECIES	936										arrdc1a (ENSHBUG00000006539)	ENSHBUG00000006528	nelfb (ENSHBUG00000006505)	entpd2a.1 (ENSHBUG00000006463)	fgf17 (ENSHBUG00000006449)	FKBP15 (ENSHBUG00000006438) #18	ccn1l2 (ENSHBUG00000006393) ##22	ENSHBUG00000006375 ##23	ENSHBUG00000006370	tubb2b (ENSHBUG00000006343) ##24	ENSHBUG00000006324
Haplochromini_A	ANCESTRAL SPECIES	32	ENSGT00950000183078.b.b	ENSGT00390000016767	ENSGT00390000004796	ENSGT00940000158044.a	ENSGT00940000154389.b	ENSGT00530000063723.a	ENSGT00900000143393	ENSGT00390000015977	ENSGT00940000155794.h.g.b.a.a.a.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.b.a.a.a.b.b ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a	ENSGT00940000159838
P. nyererei	MODERN SPECIES	348	ankle2 (ENSPNYG00000004119)	pgam5 (ENSPNYG00000004138)	zdhhc8b (ENSPNYG00000004217)	ranbp1 (ENSPNYG00000004369)	trmt2a (ENSPNYG00000004441)	ENSPNYG00000004480	dgcr8 (ENSPNYG00000004486)	ENSPNYG00000004549	ENSPNYG00000004753	ENSPNYG00000004761	nelfb (ENSPNYG00000004780)	ENSPNYG00000004868	ENSPNYG00000005167	fgf17 (ENSPNYG00000005177)	FKBP15 (ENSPNYG00000005209) #18	ccn1l2 (ENSPNYG00000005275) ##22	ENSPNYG00000005357 ##23	ENSPNYG00000005370	ENSPNYG00000005392 ##24	ENSPNYG00000005430	lhx2b (ENSPNYG00000005547)	ENSPNYG00000005562	ENSPNYG00000005575	nr5a1a (ENSPNYG00000005588)	nr6a1a (ENSPNYG00000005611)	olfml2a (ENSPNYG00000005649)	ENSPNYG00000005660	rpl35 (ENSPNYG00000005682)	golga1 (ENSPNYG00000005715)	ENSPNYG00000005751	dpp7 (ENSPNYG00000005776)
Haplochromini_B	ANCESTRAL SPECIES	44	ENSGT00950000183078.b.b	ENSGT00390000016767	ENSGT00390000004796	ENSGT00940000158044.a	ENSGT00940000154389.b	ENSGT00900000143393	ENSGT00530000063723.a	ENSGT00390000015977	ENSGT00940000155794.h.g.b.a.a.a.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000178161.a	ENSGT00390000020276.z.a #25	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B
Zebra mbuna	MODERN SPECIES	1094	ankle2 (ENSMZEG00005018692)	pgam5 (ENSMZEG00005018680)	zdhhc8b (ENSMZEG00005018673)	ranbp1 (ENSMZEG00005018667)	ENSMZEG00005018664	ENSMZEG00005018662	trmt2a (ENSMZEG00005018654)	dgcr8 (ENSMZEG00005018646)	ggt5a (ENSMZEG00005018640)	arrdc1a (ENSMZEG00005018638)	ENSMZEG00005018633	nelfb (ENSMZEG00005018628)	entpd2a.1 (ENSMZEG00005018626)	fgf17 (ENSMZEG00005018507)	FKBP15 (ENSMZEG00005018492) #18	ccn1l2 (ENSMZEG00005018490) ##22	ENSMZEG00005018483 ##23	ENSMZEG00005018473	tubb2b (ENSMZEG00005018470) ##24	ENSMZEG00005018466	ENSMZEG00005018462	ENSMZEG00005018459	ENSMZEG00005018456 #25	pias2 (ENSMZEG00005018453)	arid3c (ENSMZEG00005018451)	ptar1 (ENSMZEG00005018445)	APBA1 (ENSMZEG00005018435)	FXN (ENSMZEG00005018430)	HMGCR (ENSMZEG00005018425)	ABCA2 (ENSMZEG00005018396)	ENSMZEG00005017846
Eastern happy	MODERN SPECIES	3	pgam5 (ENSACLG00000019950)	zdhhc8b (ENSACLG00000019931)	ranbp1 (ENSACLG00000019891)	ENSACLG00000019871	ENSACLG00000019865	trmt2a (ENSACLG00000019826)	dgcr8 (ENSACLG00000019757)	ggt5a (ENSACLG00000019708)	arrdc1a (ENSACLG00000019685)	ENSACLG00000019681	nelfb (ENSACLG00000019587)	entpd2a.1 (ENSACLG00000019573)	fgf17 (ENSACLG00000019521)	ENSACLG00000019509	FKBP15 (ENSACLG00000019322) #18	ccn1l2 (ENSACLG00000019277) ##22	ENSACLG00000019242 ##23	ENSACLG00000019223	ENSACLG00000019210	ENSACLG00000019182 ##24	ENSACLG00000019171	ENSACLG00000019159 #25	ENSACLG00000019124 #25	ENSACLG00000019105 #25	ENSACLG00000019082 ##26	ENSACLG00000019045 #25	ENSACLG00000019037	lhx2b (ENSACLG00000018962)	ADGRD2 (ENSACLG00000018926)	nr5a1a (ENSACLG00000018895)	ENSACLG00000018888
Nile tilapia	MODERN SPECIES	3	ydjc (ENSONIG00000013933)	ENSONIG00000033311	ENSONIG00000038225	ube2l3b (ENSONIG00000013931)	pias2 (ENSONIG00000013927)	arid3c (ENSONIG00000013925)	ptar1 (ENSONIG00000013924)	APBA1 (ENSONIG00000013918)	ENSONIG00000032671	ENSONIG00000034062	arrdc1a (ENSONIG00000020231)	ENSONIG00000020230	nelfb (ENSONIG00000020229)	fgf17 (ENSONIG00000020227)	FKBP15 (ENSONIG00000020226) #18	ccn1l2 (ENSONIG00000038451) ##22	ENSONIG00000020224 ##23	ENSONIG00000037430	ENSONIG00000032695	ENSONIG00000029706	ENSONIG00000042260 ##24	ENSONIG00000031245 ##26	ENSONIG00000037610	ENSONIG00000020222	ENSONIG00000030564	lhx2b (ENSONIG00000039898)	ENSONIG00000029209	ADGRD2 (ENSONIG00000020219)	nr5a1 (ENSONIG00000020218)	ENSONIG00000027725	nr6a1a (ENSONIG00000020217)
Midas cichlid	MODERN SPECIES	439													ENTPD2 (ENSACIG00000011944)	fgf17 (ENSACIG00000011934)	FKBP15 (ENSACIG00000011830) #18	ccn1l2 (ENSACIG00000011469) ##22	ENSACIG00000011419 ##23	ENSACIG00000011403	ENSACIG00000011394 ##24	ENSACIG00000011386 ##26	ENSACIG00000011254	lhx2b (ENSACIG00000011239)	ENSACIG00000011211	nr5a1a (ENSACIG00000011191)	nr6a1a (ENSACIG00000011176)	olfml2a (ENSACIG00000011135)	ENSACIG00000011130	rpl35 (ENSACIG00000011118)	golga1 (ENSACIG00000011035)	PPP6C (ENSACIG00000011006)	ENSACIG00000010989
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00440000038604.j	ENSGT00940000154149.a.b	ENSGT00940000155127.a.b	ENSGT00950000183002.B.a.a	ENSGT00530000063843.a	ENSGT00940000159838	ENSGT00940000155422.bb	ENSGT00940000155275.c.b.b	ENSGT00940000156002.a.b	ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24	ENSGT00940000165492.b ##26	ENSGT00950000183101.a.b.b.a.a	ENSGT00940000158540	ENSGT01060000248575.C	ENSGT00940000161534	ENSGT00940000153391.c.b.a.j.a	ENSGT00940000157936	ENSGT00940000157194	ENSGT00990000203759	ENSGT00390000016384.m	ENSGT00940000153772.B	ENSGT00550000074961.a
Aplocheiloidei	ANCESTRAL SPECIES	220										ENSGT00940000166440	ENSGT01080000257442	ENSGT00390000012665	ENSGT01100000263542.B.b.a.b	ENSGT00940000167390	ENSGT00530000064286 #18	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.a ##23	ENSGT00620000089226	ENSGT00940000154394.a ##24
Mangrove rivulus	MODERN SPECIES	214										ENSKMAG00000011391	ENSKMAG00000011375	nelfb (ENSKMAG00000011308)	entpd2a.1 (ENSKMAG00000011267)	fgf17 (ENSKMAG00000011238)	FKBP15 (ENSKMAG00000011215) #18	ccn1l2 (ENSKMAG00000011033) ##22	ENSKMAG00000010937 ##23	ENSKMAG00000010925	tubb2b (ENSKMAG00000010899) ##24	ENSKMAG00000010877 #25	tcima (ENSKMAG00000010866)	ENSKMAG00000010855	adam28 (ENSKMAG00000010815)	ppp3cca (ENSKMAG00000010723)	vps37ba (ENSKMAG00000010685)	abcb9 (ENSKMAG00000010667)	zgc:113436 (ENSKMAG00000010644)	ogfod2 (ENSKMAG00000010620)	SLC4A5 (ENSKMAG00000010581)	zgc:110329 (ENSKMAG00000010540)	TACR1 (ENSKMAG00000010517)
Turquoise killifish	MODERN SPECIES	1027																ccn1l2 (ENSNFUG00015014146) ##22	ENSNFUG00015014207 ##23
Tiger tail seahorse	MODERN SPECIES	515	fam151b (ENSHCOG00000001933)	ENSHCOG00000001925	dpp7 (ENSHCOG00000000660)	ehmt1a (ENSHCOG00000001886)	arrdc1a (ENSHCOG00000001856)	nelfb (ENSHCOG00000001847)	fgf17 (ENSHCOG00000001834)	FKBP15 (ENSHCOG00000001827) #18	ENSHCOG00000001816	sub1b (ENSHCOG00000001809)	ENSHCOG00000001803	RABL6 (ENSHCOG00000001802)	imp4 (ENSHCOG00000001797)	araf (ENSHCOG00000001790)	zgc:64051 (ENSHCOG00000001777)	ccn1l2 (ENSHCOG00000001770) ##22	ENSHCOG00000001760 ##23	ENSHCOG00000001755	ENSHCOG00000001748 ##24	ENSHCOG00000001744 ##24	ENSHCOG00000001740 ##26	ENSHCOG00000001723	lhx2b (ENSHCOG00000001700)	ENSHCOG00000001694	ENSHCOG00000001690	nr5a1a (ENSHCOG00000001682)	nr6a1a (ENSHCOG00000001676)	olfml2a (ENSHCOG00000001668)	ENSHCOG00000001661	rpl35 (ENSHCOG00000001654)	golga1 (ENSHCOG00000001647)
Pinecone sodierfish	MODERN SPECIES	23	ENSMMDG00005005731	RABL6 (ENSMMDG00005005737)	TRAF2 (ENSMMDG00005005748)	ENSMMDG00005005914	ENSMMDG00005005916	tncb (ENSMMDG00005005961)	ENSMMDG00005007681	ENSMMDG00005007683	ENSMMDG00005007689	nsmfb (ENSMMDG00005007693)	PNPLA7 (ENSMMDG00005007709)	mrpl41 (ENSMMDG00005007865)	dph7 (ENSMMDG00005007866)	fgf17 (ENSMMDG00005007870)	FKBP15 (ENSMMDG00005008231) #18	ccn1l2 (ENSMMDG00005009668) ##22	ENSMMDG00005009682 ##23	ENSMMDG00005009684	tubb2b (ENSMMDG00005009685) ##24	ENSMMDG00005009691 ##26	ENSMMDG00005009757	lhx2b (ENSMMDG00005009768)	ENSMMDG00005009770	nr5a1a (ENSMMDG00005009771)	nr6a1a (ENSMMDG00005009822)	olfml2a (ENSMMDG00005009830)	rpl35 (ENSMMDG00005009835)	golga1 (ENSMMDG00005009863)	PPP6C (ENSMMDG00005009882)	ENSMMDG00005009884	ENSMMDG00005009886
Osteoglossiformes	ANCESTRAL SPECIES	164	ENSGT00940000155945.i.a	ENSGT00940000157955.d.a.j	ENSGT00940000160616.w	ENSGT00940000155946.b	ENSGT00530000064359.d	ENSGT00940000154645.B.a #11	ENSGT00940000160451 #12	ENSGT01060000248556.A.a.a.a.b.a #17	ENSGT00900000141021.b.a.c.b ##15	ENSGT00390000008371.b #14	ENSGT00930000151050 #13	ENSGT00530000064286.b #18	ENSGT00930000151044 #19	ENSGT00390000006922 #20	ENSGT00940000164386 #21	ENSGT00940000155151.a.a.a ##22	ENSGT00940000164907.b.b #23	ENSGT00390000016526.g	ENSGT00940000155373	ENSGT00950000183101.a.b.b.a.a.k	ENSGT00940000156261	ENSGT00940000158540	ENSGT00940000159990.g	ENSGT00940000157419	ENSGT00940000153391.c.b.a.g	ENSGT00940000157194.e	ENSGT00940000172233	ENSGT00940000158501.b	ENSGT00390000009566.c	ENSGT00550000074961.a.b
P. kingsleyae	MODERN SPECIES	557										ntmt1 (ENSPKIG00000018336) #14	ndor1 (ENSPKIG00000018380) #13	ENSPKIG00000018450 #18	lrsam1 (ENSPKIG00000018514) #19	rpl12 (ENSPKIG00000018595) #20	pole3 (ENSPKIG00000018647) #21	ccn1l2 (ENSPKIG00000018660) ##22	lmo4a (ENSPKIG00000018685) #23	ENSPKIG00000018706 #24	ENSPKIG00000018725	ENSPKIG00000018741 #25	ENSPKIG00000018761
Asian bonytongue	MODERN SPECIES	21	ENSSFOG00015028925	mvb12ba (ENSSFOG00015013632)	lmx1ba (ENSSFOG00015013658)	zbtb43 (ENSSFOG00015031491)	ENSSFOG00015013693	ENSSFOG00015013708	NCS1 (ENSSFOG00015032851) #11	gpr107 (ENSSFOG00015013755) #12	crata (ENSSFOG00015013784) #17	IER5L (ENSSFOG00015027039) ##15	ntmt1 (ENSSFOG00015013835) #14	ndor1 (ENSSFOG00015013852) #13	lrsam1 (ENSSFOG00015013925) #19	RPL12 (ENSSFOG00015029067) #20	pole3 (ENSSFOG00015014086) #21	ENSSFOG00015014104 ##22	ENSSFOG00015014116 #23	ENSSFOG00015015629	ENSSFOG00015014320 #25	fpgs (ENSSFOG00015014398)	cdk9 (ENSSFOG00015014527)	CRB2 (ENSSFOG00015014561)	DENND1A (ENSSFOG00015014700)	lhx2b (ENSSFOG00015014773)	NEK6 (ENSSFOG00015014790)	psmb7 (ENSSFOG00015014825)	NR5A1 (ENSSFOG00015029487)	ENSSFOG00015028783	nr6a1a (ENSSFOG00015014862)	OLFML2A (ENSSFOG00015033126)	ENSSFOG00015032130
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000155151.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000155151.a.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000155151.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000155151.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000155151.a.b ##22
Cod	MODERN SPECIES	19	ENSGMOG00000022953	ENSGMOG00000025502	stxbp1b (ENSGMOG00000014374)	ENSGMOG00000026838	noxa1 (ENSGMOG00000014532)	dpp7 (ENSGMOG00000014562)	man1b1b (ENSGMOG00000014595)	ENSGMOG00000031437	cacna1ba (ENSGMOG00000030232)	ehmt1a (ENSGMOG00000007913)	arrdc1a (ENSGMOG00000012972)	ENSGMOG00000036013	nelfb (ENSGMOG00000019424)	ENSGMOG00000023633	ENSGMOG00000006303 #18	ccn1l2 (ENSGMOG00000029328) ##22	ENSGMOG00000036294 ##23	ENSGMOG00000034253	tubb2b (ENSGMOG00000006371) ##24	ENSGMOG00000024044	ENSGMOG00000027453 ##26	ENSGMOG00000006384 #25	ENSGMOG00000037094	ENSGMOG00000024444	ENSGMOG00000022914	OLFML2A (ENSGMOG00000008809)	nr6a1a (ENSGMOG00000008794)	NR5A1 (ENSGMOG00000009375)	ADGRD2 (ENSGMOG00000009363)	ENSGMOG00000032171	FRMD3 (ENSGMOG00000010103)