Euarchontoglires_A ANCESTRAL SPECIES 6 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00940000162787 #27 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Glires ANCESTRAL SPECIES 5 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00940000162787 #27 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Lagomorpha ANCESTRAL SPECIES ENSGT00530000063927.a.a #22 Rabbit MODERN SPECIES 265 ENSOCUG00000031043 #22 Rodentia ANCESTRAL SPECIES 6 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00940000162787 #27 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Rodentia_B ANCESTRAL SPECIES 18 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 Myomorpha ANCESTRAL SPECIES 21 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 Lesser Egyptian jerboa MODERN SPECIES 44 Tbp (ENSJJAG00000005220) Psmb1 (ENSJJAG00000019394) ENSJJAG00000009475 ENSJJAG00000009562 Fam120b (ENSJJAG00000017465) #37 Dll1 (ENSJJAG00000008249) #36 ENSJJAG00000018062 #35 ENSJJAG00000020281 #34 Phf10 (ENSJJAG00000010002) #33 1600012H06Rik (ENSJJAG00000009779) #32 Wdr27 (ENSJJAG00000018913) #31 Thbs2 (ENSJJAG00000005730) #30 ENSJJAG00000022960 Smoc2 (ENSJJAG00000009559) #29 Dact2 (ENSJJAG00000006451) #28 ENSJJAG00000015043 #22 ENSJJAG00000011658 #24 Afdn (ENSJJAG00000011148) #25 ENSJJAG00000020398 Cep43 (ENSJJAG00000024342) #19 ENSJJAG00000013485 #18 Rps6ka2 (ENSJJAG00000005765) #16 ENSJJAG00000020707 #15 ENSJJAG00000023581 #14 ENSJJAG00000022568 #12 Pde10a (ENSJJAG00000010428) #11 ENSJJAG00000005686 #10 ENSJJAG00000010987 ENSJJAG00000017023 Pabpc6 (ENSJJAG00000019230) Qki (ENSJJAG00000022765) #9 Muroidea ANCESTRAL SPECIES 22 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00400000024673 #17 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 Upper Galilee mountains blind mole rat MODERN SPECIES 906 Pde10a (ENSNGAG00000006185) #11 ENSNGAG00000016587 #12 ENSNGAG00000013272 #14 ENSNGAG00000003126 #15 Rps6ka2 (ENSNGAG00000017074) #16 ENSNGAG00000015365 ENSNGAG00000014822 #18 Cep43 (ENSNGAG00000013354) #19 Ccr6 (ENSNGAG00000020176) #20 ENSNGAG00000007143 #22 Ttll2 (ENSNGAG00000012987) #23 ENSNGAG00000012008 #24 Muroidea_A ANCESTRAL SPECIES 11 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.r #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 Cricetidae ANCESTRAL SPECIES 11 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.r #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237.d #25 ENSGT00940000162166 #26 ENSGT00940000160886.p.a.b.a.a ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024.e #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Cricetinae ANCESTRAL SPECIES 7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.r #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237.d #25 ENSGT00940000162166 #26 ENSGT00940000160886.p.a.b.a.a ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024.e #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Chinese hamster chok1gshd MODERN SPECIES 1 Agpat4 (ENSCGRG00001024340) Prkn (ENSCGRG00001011980) #7 ENSCGRG00001009195 Pacrg (ENSCGRG00001010865) #8 Qki (ENSCGRG00001012114) #9 Pabpc6 (ENSCGRG00001007983) 1700010I14Rik (ENSCGRG00001014965) #10 Pde10a (ENSCGRG00001016395) #11 ENSCGRG00001024700 #12 ENSCGRG00001024817 #14 ENSCGRG00001024881 #15 ENSCGRG00001024749 #18 Rps6ka2 (ENSCGRG00001024721) #16 ENSCGRG00001024787 Gpr31b (ENSCGRG00001006182) #21 ENSCGRG00001000721 #22 Ttll2 (ENSCGRG00001024844) #23 ENSCGRG00001024904 #24 ENSCGRG00001007918 Afdn (ENSCGRG00001013153) #25 ENSCGRG00001010432 #26 ENSCGRG00001010553 Dact2 (ENSCGRG00001007356) #28 Smoc2 (ENSCGRG00001000600) #29 Thbs2 (ENSCGRG00001023457) #30 Wdr27 (ENSCGRG00001024854) #31 Phf10 (ENSCGRG00001004025) #33 1600012H06Rik (ENSCGRG00001008745) #32 ENSCGRG00001024607 #34 ENSCGRG00001024849 #35 Dll1 (ENSCGRG00001014863) #36 Cricetidae_B ANCESTRAL SPECIES 21 ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.r #15 ENSGT01030000234667.b #20 ENSGT00640000091563.a #18 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237.d #25 ENSGT00940000162166 #26 ENSGT00940000160886.p.a.b.a.a ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024.e #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Northern American deer mouse MODERN SPECIES 7 ENSPEMG00000028613 ENSPEMG00000025332 Pacrg (ENSPEMG00000008420) #8 Qki (ENSPEMG00000007765) #9 Pabpc6 (ENSPEMG00000028235) 1700010I14Rik (ENSPEMG00000009028) #10 Pde10a (ENSPEMG00000013375) #11 T (ENSPEMG00000015655) #12 ENSPEMG00000027563 Prr18 (ENSPEMG00000014412) #13 ENSPEMG00000017376 #14 ENSPEMG00000018400 #15 ENSPEMG00000011035 #18 Rps6ka2 (ENSPEMG00000008858) #16 Gpr31b (ENSPEMG00000029005) #21 ENSPEMG00000006421 #22 Ttll2 (ENSPEMG00000012262) #23 ENSPEMG00000017052 #24 Afdn (ENSPEMG00000009605) #25 ENSPEMG00000025001 #26 ENSPEMG00000031076 Dact2 (ENSPEMG00000006283) #28 Smoc2 (ENSPEMG00000018849) #29 Thbs2 (ENSPEMG00000006363) #30 Wdr27 (ENSPEMG00000016488) #31 1600012H06Rik (ENSPEMG00000024738) #32 Phf10 (ENSPEMG00000017299) #33 ENSPEMG00000013043 #34 ENSPEMG00000018453 #35 ENSPEMG00000024556 #35 Dll1 (ENSPEMG00000003760) #36 Prairie vole MODERN SPECIES 358 Map3k4 (ENSMOCG00000015705) Agpat4 (ENSMOCG00000002544) Prkn (ENSMOCG00000000910) #7 Pacrg (ENSMOCG00000018703) #8 Qki (ENSMOCG00000008370) #9 1700010I14Rik (ENSMOCG00000011216) #10 Pde10a (ENSMOCG00000016596) #11 T (ENSMOCG00000016940) #12 Prr18 (ENSMOCG00000014100) #13 ENSMOCG00000012383 #14 ENSMOCG00000003155 #15 Ccr6 (ENSMOCG00000022621) #20 ENSMOCG00000014231 ENSMOCG00000016647 #18 Rps6ka2 (ENSMOCG00000011166) #16 ENSMOCG00000019493 #22 ENSMOCG00000016335 #24 ENSMOCG00000011368 Afdn (ENSMOCG00000017063) #25 Dact2 (ENSMOCG00000011813) #28 Smoc2 (ENSMOCG00000007672) #29 Thbs2 (ENSMOCG00000020846) #30 Wdr27 (ENSMOCG00000001650) #31 1600012H06Rik (ENSMOCG00000002884) #32 Phf10 (ENSMOCG00000000325) #33 ENSMOCG00000017393 #34 ENSMOCG00000009758 #35 Dll1 (ENSMOCG00000001279) #36 Fam120b (ENSMOCG00000014257) #37 Psmb1 (ENSMOCG00000010751) Tbp (ENSMOCG00000006234) Murinae ANCESTRAL SPECIES 29 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.q.b #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 ENSGT00940000157474 Rat MODERN SPECIES Pacrg (ENSRNOG00000068261) #8 Qki (ENSRNOG00000048297) #9 Pabpc6 (ENSRNOG00000017367) MGC94891 (ENSRNOG00000011243) #10 Pde10a (ENSRNOG00000011310) #11 Tbxt (ENSRNOG00000012229) #12 T2 (ENSRNOG00000024172) ENSRNOG00000066810 Prr18 (ENSRNOG00000070586) #13 Sft2d1 (ENSRNOG00000024140) #14 Mpc1 (ENSRNOG00000012415) #15 Ccr6 (ENSRNOG00000012964) #20 Cep43 (ENSRNOG00000055093) #19 Rnaset2 (ENSRNOG00000013190) #18 Rps6ka2 (ENSRNOG00000013194) #16 Tcp10b (ENSRNOG00000013374) #22 Ttll2 (ENSRNOG00000033901) #23 Unc93a (ENSRNOG00000047027) #24 RGD1560718 (ENSRNOG00000059551) LOC102546375 (ENSRNOG00000063775) Smok2a (ENSRNOG00000052093) LOC120100105 (ENSRNOG00000068967) AABR07001592.2 (ENSRNOG00000058564) Afdn (ENSRNOG00000023753) #25 LOC102556715 (ENSRNOG00000065613) Vom2r7 (ENSRNOG00000033775) ENSRNOG00000069666 Vom1r1 (ENSRNOG00000070889) Vom2r8 (ENSRNOG00000065638) Vom2r9 (ENSRNOG00000013671) ENSRNOG00000069390 Mus ANCESTRAL SPECIES 21 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988.q.b #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00970000194611 ENSGT00940000155237 #25 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035 Shrew mouse DUPLICATION Shrew mouse DUPLICATION Shrew mouse MODERN SPECIES 13 Pde10a (MGP_PahariEiJ_G0023376) #11 MGP_PahariEiJ_G0023377 T (MGP_PahariEiJ_G0023378) #12 MGP_PahariEiJ_G0023379 #14 Prr18 (MGP_PahariEiJ_G0023380) #13 MGP_PahariEiJ_G0023381 #14 MGP_PahariEiJ_G0023382 #15 Ccr6 (MGP_PahariEiJ_G0023383) #20 Cep43 (MGP_PahariEiJ_G0023384) #19 MGP_PahariEiJ_G0023385 #18 MGP_PahariEiJ_G0023386 #18 MGP_PahariEiJ_G0023387 #17 MGP_PahariEiJ_G0023388 #17 Rps6ka2 (MGP_PahariEiJ_G0023389) #16 Gpr31b (MGP_PahariEiJ_G0023390) #21 MGP_PahariEiJ_G0023391 #22 MGP_PahariEiJ_G0023392 #22 MGP_PahariEiJ_G0023393 #22 Ttll2 (MGP_PahariEiJ_G0023394) #23 MGP_PahariEiJ_G0023395 #24 MGP_PahariEiJ_G0023396 #24 MGP_PahariEiJ_G0023397 Afdn (MGP_PahariEiJ_G0023398) #25 Dact2 (MGP_PahariEiJ_G0023399) #28 Smoc2 (MGP_PahariEiJ_G0023400) #29 Thbs2 (MGP_PahariEiJ_G0023401) #30 Wdr27 (MGP_PahariEiJ_G0023402) #31 1600012H06Rik (MGP_PahariEiJ_G0023403) #32 Phf10 (MGP_PahariEiJ_G0023404) #33 MGP_PahariEiJ_G0023405 #34 MGP_PahariEiJ_G0023406 #34 Shrew mouse MODERN SPECIES 13 T (MGP_PahariEiJ_G0023378) #12 MGP_PahariEiJ_G0023379 #14 Prr18 (MGP_PahariEiJ_G0023380) #13 MGP_PahariEiJ_G0023381 #14 MGP_PahariEiJ_G0023382 #15 Ccr6 (MGP_PahariEiJ_G0023383) #20 Cep43 (MGP_PahariEiJ_G0023384) #19 MGP_PahariEiJ_G0023385 #18 MGP_PahariEiJ_G0023386 #18 MGP_PahariEiJ_G0023387 #17 MGP_PahariEiJ_G0023388 #17 Rps6ka2 (MGP_PahariEiJ_G0023389) #16 Gpr31b (MGP_PahariEiJ_G0023390) #21 MGP_PahariEiJ_G0023391 #22 MGP_PahariEiJ_G0023392 #22 MGP_PahariEiJ_G0023393 #22 Ttll2 (MGP_PahariEiJ_G0023394) #23 MGP_PahariEiJ_G0023395 #24 MGP_PahariEiJ_G0023396 #24 MGP_PahariEiJ_G0023397 Afdn (MGP_PahariEiJ_G0023398) #25 Dact2 (MGP_PahariEiJ_G0023399) #28 Smoc2 (MGP_PahariEiJ_G0023400) #29 Thbs2 (MGP_PahariEiJ_G0023401) #30 Wdr27 (MGP_PahariEiJ_G0023402) #31 1600012H06Rik (MGP_PahariEiJ_G0023403) #32 Phf10 (MGP_PahariEiJ_G0023404) #33 MGP_PahariEiJ_G0023405 #34 MGP_PahariEiJ_G0023406 #34 MGP_PahariEiJ_G0023407 #35 Dll1 (MGP_PahariEiJ_G0023408) #36 Shrew mouse MODERN SPECIES 13 MGP_PahariEiJ_G0023377 T (MGP_PahariEiJ_G0023378) #12 MGP_PahariEiJ_G0023379 #14 Prr18 (MGP_PahariEiJ_G0023380) #13 MGP_PahariEiJ_G0023381 #14 MGP_PahariEiJ_G0023382 #15 Ccr6 (MGP_PahariEiJ_G0023383) #20 Cep43 (MGP_PahariEiJ_G0023384) #19 MGP_PahariEiJ_G0023385 #18 MGP_PahariEiJ_G0023386 #18 MGP_PahariEiJ_G0023387 #17 MGP_PahariEiJ_G0023388 #17 Rps6ka2 (MGP_PahariEiJ_G0023389) #16 Gpr31b (MGP_PahariEiJ_G0023390) #21 MGP_PahariEiJ_G0023391 #22 MGP_PahariEiJ_G0023392 #22 MGP_PahariEiJ_G0023393 #22 Ttll2 (MGP_PahariEiJ_G0023394) #23 MGP_PahariEiJ_G0023395 #24 MGP_PahariEiJ_G0023396 #24 MGP_PahariEiJ_G0023397 Afdn (MGP_PahariEiJ_G0023398) #25 Dact2 (MGP_PahariEiJ_G0023399) #28 Smoc2 (MGP_PahariEiJ_G0023400) #29 Thbs2 (MGP_PahariEiJ_G0023401) #30 Wdr27 (MGP_PahariEiJ_G0023402) #31 1600012H06Rik (MGP_PahariEiJ_G0023403) #32 Phf10 (MGP_PahariEiJ_G0023404) #33 MGP_PahariEiJ_G0023405 #34 MGP_PahariEiJ_G0023406 #34 MGP_PahariEiJ_G0023407 #35 Mus_A ANCESTRAL SPECIES 10 ENSGT00940000155310.b #9 ENSGT00940000153773.a.a.b.e.b ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a.j #14 ENSGT00510000046988.q.b #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000160886.p.a.b.b.b ENSGT00970000194611 ENSGT00940000155237 #25 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Ryukyu mouse DUPLICATION Ryukyu mouse DUPLICATION Ryukyu mouse MODERN SPECIES 8 1700010I14Rik (MGP_CAROLIEiJ_G0021059) #10 Pde10a (MGP_CAROLIEiJ_G0021060) #11 T (MGP_CAROLIEiJ_G0021061) #12 Sft2d1 (MGP_CAROLIEiJ_G0021062) #14 Prr18 (MGP_CAROLIEiJ_G0021063) #13 MGP_CAROLIEiJ_G0021064 #14 MGP_CAROLIEiJ_G0021065 #15 Ccr6 (MGP_CAROLIEiJ_G0021066) #20 Cep43 (MGP_CAROLIEiJ_G0021067) #19 MGP_CAROLIEiJ_G0021068 #18 MGP_CAROLIEiJ_G0021069 #18 Rps6ka2 (MGP_CAROLIEiJ_G0021070) #16 Gpr31b (MGP_CAROLIEiJ_G0021071) #21 MGP_CAROLIEiJ_G0021072 #22 MGP_CAROLIEiJ_G0021073 #22 MGP_CAROLIEiJ_G0021074 #22 Ttll2 (MGP_CAROLIEiJ_G0021075) #23 MGP_CAROLIEiJ_G0021076 #24 MGP_CAROLIEiJ_G0021077 #24 MGP_CAROLIEiJ_G0021078 MGP_CAROLIEiJ_G0021079 MGP_CAROLIEiJ_G0021080 MGP_CAROLIEiJ_G0021081 MGP_CAROLIEiJ_G0021082 Afdn (MGP_CAROLIEiJ_G0021083) #25 Dact2 (MGP_CAROLIEiJ_G0021084) #28 Smoc2 (MGP_CAROLIEiJ_G0021085) #29 Thbs2 (MGP_CAROLIEiJ_G0021086) #30 Wdr27 (MGP_CAROLIEiJ_G0021087) #31 1600012H06Rik (MGP_CAROLIEiJ_G0021088) #32 Phf10 (MGP_CAROLIEiJ_G0021089) #33 Ryukyu mouse MODERN SPECIES 8 Qki (MGP_CAROLIEiJ_G0021057) #9 Pabpc6 (MGP_CAROLIEiJ_G0021058) 1700010I14Rik (MGP_CAROLIEiJ_G0021059) #10 Pde10a (MGP_CAROLIEiJ_G0021060) #11 T (MGP_CAROLIEiJ_G0021061) #12 Sft2d1 (MGP_CAROLIEiJ_G0021062) #14 Prr18 (MGP_CAROLIEiJ_G0021063) #13 MGP_CAROLIEiJ_G0021064 #14 MGP_CAROLIEiJ_G0021065 #15 Ccr6 (MGP_CAROLIEiJ_G0021066) #20 Cep43 (MGP_CAROLIEiJ_G0021067) #19 MGP_CAROLIEiJ_G0021068 #18 MGP_CAROLIEiJ_G0021069 #18 Rps6ka2 (MGP_CAROLIEiJ_G0021070) #16 Gpr31b (MGP_CAROLIEiJ_G0021071) #21 MGP_CAROLIEiJ_G0021072 #22 MGP_CAROLIEiJ_G0021073 #22 MGP_CAROLIEiJ_G0021074 #22 Ttll2 (MGP_CAROLIEiJ_G0021075) #23 MGP_CAROLIEiJ_G0021076 #24 MGP_CAROLIEiJ_G0021077 #24 MGP_CAROLIEiJ_G0021078 MGP_CAROLIEiJ_G0021079 MGP_CAROLIEiJ_G0021080 MGP_CAROLIEiJ_G0021081 MGP_CAROLIEiJ_G0021082 Afdn (MGP_CAROLIEiJ_G0021083) #25 Dact2 (MGP_CAROLIEiJ_G0021084) #28 Smoc2 (MGP_CAROLIEiJ_G0021085) #29 Thbs2 (MGP_CAROLIEiJ_G0021086) #30 Wdr27 (MGP_CAROLIEiJ_G0021087) #31 Ryukyu mouse MODERN SPECIES 8 Pabpc6 (MGP_CAROLIEiJ_G0021058) 1700010I14Rik (MGP_CAROLIEiJ_G0021059) #10 Pde10a (MGP_CAROLIEiJ_G0021060) #11 T (MGP_CAROLIEiJ_G0021061) #12 Sft2d1 (MGP_CAROLIEiJ_G0021062) #14 Prr18 (MGP_CAROLIEiJ_G0021063) #13 MGP_CAROLIEiJ_G0021064 #14 MGP_CAROLIEiJ_G0021065 #15 Ccr6 (MGP_CAROLIEiJ_G0021066) #20 Cep43 (MGP_CAROLIEiJ_G0021067) #19 MGP_CAROLIEiJ_G0021068 #18 MGP_CAROLIEiJ_G0021069 #18 Rps6ka2 (MGP_CAROLIEiJ_G0021070) #16 Gpr31b (MGP_CAROLIEiJ_G0021071) #21 MGP_CAROLIEiJ_G0021072 #22 MGP_CAROLIEiJ_G0021073 #22 MGP_CAROLIEiJ_G0021074 #22 Ttll2 (MGP_CAROLIEiJ_G0021075) #23 MGP_CAROLIEiJ_G0021076 #24 MGP_CAROLIEiJ_G0021077 #24 MGP_CAROLIEiJ_G0021078 MGP_CAROLIEiJ_G0021079 MGP_CAROLIEiJ_G0021080 MGP_CAROLIEiJ_G0021081 MGP_CAROLIEiJ_G0021082 Afdn (MGP_CAROLIEiJ_G0021083) #25 Dact2 (MGP_CAROLIEiJ_G0021084) #28 Smoc2 (MGP_CAROLIEiJ_G0021085) #29 Thbs2 (MGP_CAROLIEiJ_G0021086) #30 Wdr27 (MGP_CAROLIEiJ_G0021087) #31 1600012H06Rik (MGP_CAROLIEiJ_G0021088) #32 Mus_B ANCESTRAL SPECIES 9 ENSGT00700000105447.b.a ENSGT00940000154721.db.a ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00690000103860 ENSGT00390000002164 #13 ENSGT00390000018525.a.a.j #14 ENSGT00510000046988.q.b.b.a #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000160886.p.a.b.b.b.e.b ENSGT00940000160886.p.a.b.b.b.f ENSGT00970000194611 ENSGT00940000155237 #25 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 Mouse DUPLICATION Mouse DUPLICATION Mouse MODERN SPECIES 8 Plg (ENSMUSG00000059481) Slc22a3 (ENSMUSG00000023828) Slc22a2 (ENSMUSG00000040966) Slc22a1 (ENSMUSG00000023829) Igf2r (ENSMUSG00000023830) Mas1 (ENSMUSG00000068037) Mrgprh (ENSMUSG00000059408) Pnldc1 (ENSMUSG00000073460) Mrpl18 (ENSMUSG00000057388) Tcp1 (ENSMUSG00000068039) Acat3 (ENSMUSG00000062480) Acat2 (ENSMUSG00000023832) Wtap (ENSMUSG00000060475) Sod2 (ENSMUSG00000006818) Gpr31b (ENSMUSG00000071311) #21 Tcp10b (ENSMUSG00000055602) #22 Unc93a (ENSMUSG00000067049) #24 Smok2a (ENSMUSG00000073458) Smok2b (ENSMUSG00000073457) Tcp10c (ENSMUSG00000052469) #22 Afdn (ENSMUSG00000068036) #25 Gm7168 (ENSMUSG00000067941) Gm7356 (ENSMUSG00000101307) Gm7358 (ENSMUSG00000101361) Dact2 (ENSMUSG00000048826) #28 Smoc2 (ENSMUSG00000023886) #29 Thbs2 (ENSMUSG00000023885) #30 Wdr27 (ENSMUSG00000046991) #31 1600012H06Rik (ENSMUSG00000050088) #32 Phf10 (ENSMUSG00000023883) #33 Dynlt2a3 (ENSMUSG00000116780) #34 Mouse MODERN SPECIES 8 Igf2r (ENSMUSG00000023830) Mas1 (ENSMUSG00000068037) Mrgprh (ENSMUSG00000059408) Pnldc1 (ENSMUSG00000073460) Mrpl18 (ENSMUSG00000057388) Tcp1 (ENSMUSG00000068039) Acat3 (ENSMUSG00000062480) Acat2 (ENSMUSG00000023832) Wtap (ENSMUSG00000060475) Sod2 (ENSMUSG00000006818) Gpr31b (ENSMUSG00000071311) #21 Tcp10b (ENSMUSG00000055602) #22 Unc93a (ENSMUSG00000067049) #24 Smok2a (ENSMUSG00000073458) Smok2b (ENSMUSG00000073457) Tcp10c (ENSMUSG00000052469) #22 Afdn (ENSMUSG00000068036) #25 Gm7168 (ENSMUSG00000067941) Gm7356 (ENSMUSG00000101307) Gm7358 (ENSMUSG00000101361) Dact2 (ENSMUSG00000048826) #28 Smoc2 (ENSMUSG00000023886) #29 Thbs2 (ENSMUSG00000023885) #30 Wdr27 (ENSMUSG00000046991) #31 1600012H06Rik (ENSMUSG00000050088) #32 Phf10 (ENSMUSG00000023883) #33 Dynlt2a3 (ENSMUSG00000116780) #34 9030025P20Rik (ENSMUSG00000116953) #35 Dynlt2a2 (ENSMUSG00000079710) #34 Gm3435 (ENSMUSG00000116895) #35 Dynlt2a1 (ENSMUSG00000079707) #34 Mouse MODERN SPECIES 8 Serac1 (ENSMUSG00000015659) Gtf2h5 (ENSMUSG00000034345) Tulp4 (ENSMUSG00000034377) Tmem181a (ENSMUSG00000038141) Dynlt1a (ENSMUSG00000092074) Dynlt1b (ENSMUSG00000096255) Dynlt1c (ENSMUSG00000000579) Dynlt1f (ENSMUSG00000095677) Sytl3 (ENSMUSG00000041831) Ezr (ENSMUSG00000052397) Rsph3b (ENSMUSG00000023806) Tagap1 (ENSMUSG00000052031) Rnaset2b (ENSMUSG00000094724) #18 Gm1604b (ENSMUSG00000094083) #17 Rps6ka2 (ENSMUSG00000023809) #16 Tcp10a (ENSMUSG00000071322) #22 Ttll2 (ENSMUSG00000079722) #23 Gm49630 (ENSMUSG00000116672) Unc93a2 (ENSMUSG00000056133) #24 Fndc1 (ENSMUSG00000071984) Tagap (ENSMUSG00000033450) Rsph3a (ENSMUSG00000073471) Rnaset2a (ENSMUSG00000095687) #18 Cep43 (ENSMUSG00000069135) #19 Ccr6 (ENSMUSG00000040899) #20 Mpc1 (ENSMUSG00000023861) #15 Sft2d1 (ENSMUSG00000073468) #14 Prr18 (ENSMUSG00000055945) #13 T2 (ENSMUSG00000058159) T (ENSMUSG00000062327) #12 Pde10a (ENSMUSG00000023868) #11 Mus_C ANCESTRAL SPECIES 34 ENSGT00960000191666 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a.j #14 ENSGT00510000046988.q.b.b.a #15 ENSGT00510000046988.q.b.a #15 ENSGT01030000234667.b #20 ENSGT00390000007441 #19 ENSGT00640000091563.a #18 ENSGT00400000024673 #17 ENSGT00940000159956 #16 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063558.B ENSGT00940000157993.j ENSGT00940000157993.i ENSGT00390000004172 ENSGT01090000260082.d.b ENSGT00940000160610 ENSGT00940000154531 ENSGT00390000007183 ENSGT00940000155913 ENSGT00390000004028 ENSGT00390000003560 ENSGT00940000160715 ENSGT00940000156557 ENSGT00940000156483 spretus DUPLICATION spretus MODERN SPECIES 8 MGP_SPRETEiJ_G0021960 MGP_SPRETEiJ_G0021959 T (MGP_SPRETEiJ_G0021958) #12 Prr18 (MGP_SPRETEiJ_G0021957) #13 MGP_SPRETEiJ_G0021956 #14 Sft2d1 (MGP_SPRETEiJ_G0021955) #14 MGP_SPRETEiJ_G0021954 #15 Ccr6 (MGP_SPRETEiJ_G0021953) #20 Cep43 (MGP_SPRETEiJ_G0021952) #19 MGP_SPRETEiJ_G0021951 #18 MGP_SPRETEiJ_G0021950 #18 MGP_SPRETEiJ_G0021949 #17 MGP_SPRETEiJ_G0021948 #17 Rps6ka2 (MGP_SPRETEiJ_G0021947) #16 Gpr31b (MGP_SPRETEiJ_G0021946) #21 MGP_SPRETEiJ_G0021945 #22 MGP_SPRETEiJ_G0021944 #22 Ttll2 (MGP_SPRETEiJ_G0021943) #23 Fndc1 (MGP_SPRETEiJ_G0021942) Tagap (MGP_SPRETEiJ_G0021941) Tagap1 (MGP_SPRETEiJ_G0021940) MGP_SPRETEiJ_G0021939 MGP_SPRETEiJ_G0021938 Ezr (MGP_SPRETEiJ_G0021937) MGP_SPRETEiJ_G0021936 Tmem181a (MGP_SPRETEiJ_G0021935) Tulp4 (MGP_SPRETEiJ_G0021934) Gtf2h5 (MGP_SPRETEiJ_G0021933) Serac1 (MGP_SPRETEiJ_G0021932) Synj2 (MGP_SPRETEiJ_G0021931) Snx9 (MGP_SPRETEiJ_G0021930) spretus MODERN SPECIES 8 MGP_SPRETEiJ_G0021959 T (MGP_SPRETEiJ_G0021958) #12 Prr18 (MGP_SPRETEiJ_G0021957) #13 MGP_SPRETEiJ_G0021956 #14 Sft2d1 (MGP_SPRETEiJ_G0021955) #14 MGP_SPRETEiJ_G0021954 #15 Ccr6 (MGP_SPRETEiJ_G0021953) #20 Cep43 (MGP_SPRETEiJ_G0021952) #19 MGP_SPRETEiJ_G0021951 #18 MGP_SPRETEiJ_G0021950 #18 MGP_SPRETEiJ_G0021949 #17 MGP_SPRETEiJ_G0021948 #17 Rps6ka2 (MGP_SPRETEiJ_G0021947) #16 Gpr31b (MGP_SPRETEiJ_G0021946) #21 MGP_SPRETEiJ_G0021945 #22 MGP_SPRETEiJ_G0021944 #22 Ttll2 (MGP_SPRETEiJ_G0021943) #23 Fndc1 (MGP_SPRETEiJ_G0021942) Tagap (MGP_SPRETEiJ_G0021941) Tagap1 (MGP_SPRETEiJ_G0021940) MGP_SPRETEiJ_G0021939 MGP_SPRETEiJ_G0021938 Ezr (MGP_SPRETEiJ_G0021937) MGP_SPRETEiJ_G0021936 Tmem181a (MGP_SPRETEiJ_G0021935) Tulp4 (MGP_SPRETEiJ_G0021934) Gtf2h5 (MGP_SPRETEiJ_G0021933) Serac1 (MGP_SPRETEiJ_G0021932) Synj2 (MGP_SPRETEiJ_G0021931) Snx9 (MGP_SPRETEiJ_G0021930) Zdhhc14 (MGP_SPRETEiJ_G0021929) Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 136 ENSMSIG00000004882 #22 ENSMSIG00000004874 #22 Ttll2 (ENSMSIG00000004867) #23 Steppe mouse MODERN SPECIES 136 ENSMSIG00000004882 #22 ENSMSIG00000004874 #22 Ttll2 (ENSMSIG00000004867) #23 Steppe mouse MODERN SPECIES 1154 ENSMSIG00000005793 #22 Rodentia_A ANCESTRAL SPECIES 8 ENSGT00950000182836.b.b.b.b ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162752 #23 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00940000162787 #27 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Sciuridae ANCESTRAL SPECIES 1 ENSGT00950000182836.b.b.b.b ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162787 #27 ENSGT00940000162166 #26 ENSGT00940000155237 #25 ENSGT00530000063359.A #24 ENSGT00940000162752 #23 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 Marmotini ANCESTRAL SPECIES 11 ENSGT00390000015545.v ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162787 #27 ENSGT00940000162166 #26 ENSGT00940000155237 #25 ENSGT00530000063359.A #24 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 ENSGT00940000159781 #36 ENSGT00530000063168.b #37 ENSGT00550000075035.r Marmotini_b ANCESTRAL SPECIES 56 ENSGT00390000015545.v ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000002164 #13 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00940000162787 #27 ENSGT00940000162166 #26 ENSGT00940000155237 #25 ENSGT00530000063359.A #24 ENSGT00950000183181.A.a #28 ENSGT00390000018436.a.b #29 ENSGT00940000157846 #30 ENSGT00390000012017 #31 ENSGT00390000018879 #32 ENSGT00940000155172 #33 ENSGT00940000160069 #34 ENSGT00390000001024 #35 Arctic ground squirrel MODERN SPECIES 683 MPC1 (ENSUPAG00010000652) #15 RPS6KA2 (ENSUPAG00010000574) #16 RNASET2 (ENSUPAG00010000562) #18 CEP43 (ENSUPAG00010000510) #19 CCR6 (ENSUPAG00010000493) #20 ENSUPAG00010000480 #22 Squirrel MODERN SPECIES 89 AGPAT4 (ENSSTOG00000002544) PRKN (ENSSTOG00000021965) #7 ENSSTOG00000034364 PACRG (ENSSTOG00000010375) #8 QKI (ENSSTOG00000009113) #9 C6orf118 (ENSSTOG00000020468) #10 PDE10A (ENSSTOG00000001947) #11 TBXT (ENSSTOG00000028238) #12 SFT2D1 (ENSSTOG00000031211) #14 MPC1 (ENSSTOG00000024720) #15 RPS6KA2 (ENSSTOG00000005318) #16 RNASET2 (ENSSTOG00000010853) #18 CEP43 (ENSSTOG00000028679) #19 CCR6 (ENSSTOG00000022381) #20 GPR31 (ENSSTOG00000002401) #21 ENSSTOG00000025800 #22 ENSSTOG00000002281 #24 FRMD1 (ENSSTOG00000019365) #27 KIF25 (ENSSTOG00000027308) #26 AFDN (ENSSTOG00000014943) #25 DACT2 (ENSSTOG00000028857) #28 SMOC2 (ENSSTOG00000011824) #29 THBS2 (ENSSTOG00000028868) #30 WDR27 (ENSSTOG00000021993) #31 C6orf120 (ENSSTOG00000021666) #32 PHF10 (ENSSTOG00000022892) #33 DYNLT2 (ENSSTOG00000011284) #34 ERMARD (ENSSTOG00000011287) #35 Alpin marmot MODERN SPECIES 55 MAP3K4 (ENSMMMG00000009318) AGPAT4 (ENSMMMG00000009306) ENSMMMG00000009285 PRKN (ENSMMMG00000009240) #7 PACRG (ENSMMMG00000009213) #8 QKI (ENSMMMG00000009192) #9 ENSMMMG00000009166 #10 PDE10A (ENSMMMG00000009083) #11 TBXT (ENSMMMG00000009058) #12 ENSMMMG00000009041 MPC1 (ENSMMMG00000009012) #15 RPS6KA2 (ENSMMMG00000008982) #16 RNASET2 (ENSMMMG00000008966) #18 ENSMMMG00000008953 #19 CCR6 (ENSMMMG00000008925) #20 ENSMMMG00000008905 #22 FRMD1 (ENSMMMG00000008833) #27 KIF25 (ENSMMMG00000008818) #26 AFDN (ENSMMMG00000008187) #25 UNC93A (ENSMMMG00000008150) #24 DACT2 (ENSMMMG00000008118) #28 SMOC2 (ENSMMMG00000008070) #29 ENSMMMG00000008062 THBS2 (ENSMMMG00000008020) #30 WDR27 (ENSMMMG00000007956) #31 C6orf120 (ENSMMMG00000007952) #32 PHF10 (ENSMMMG00000007949) #33 ERMARD (ENSMMMG00000007893) #35 DLL1 (ENSMMMG00000007861) #36 FAM120B (ENSMMMG00000007838) #37 ENSMMMG00000007812 Eurasian red squirrel MODERN SPECIES 16 QKI (ENSSVLG00005011023) #9 C6orf118 (ENSSVLG00005010851) #10 PDE10A (ENSSVLG00005010372) #11 ENSSVLG00005010236 TBXT (ENSSVLG00005010149) #12 PRR18 (ENSSVLG00005010120) #13 SFT2D1 (ENSSVLG00005010090) #14 MPC1 (ENSSVLG00005009984) #15 ENSSVLG00005009943 ENSSVLG00005009919 ENSSVLG00005009894 RPS6KA2 (ENSSVLG00005009658) #16 RNASET2 (ENSSVLG00005009530) #18 CEP43 (ENSSVLG00005009283) #19 CCR6 (ENSSVLG00005009206) #20 ENSSVLG00005009071 #22 TTLL2 (ENSSVLG00005009051) #23 UNC93A (ENSSVLG00005008938) #24 ENSSVLG00005008872 AFDN (ENSSVLG00005008595) #25 KIF25 (ENSSVLG00005008516) #26 DACT2 (ENSSVLG00005008476) #28 SMOC2 (ENSSVLG00005008335) #29 THBS2 (ENSSVLG00005008075) #30 ENSSVLG00005010185 WDR27 (ENSSVLG00005010073) #31 ENSSVLG00005010029 #32 PHF10 (ENSSVLG00005009963) #33 ENSSVLG00005009866 #35 DYNLT2 (ENSSVLG00005009825) #34 ENSSVLG00005009783 Hystricomorpha ANCESTRAL SPECIES 53 ENSGT00880000138034 ENSGT00950000182836.b.b.b.b ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00390000014904 ENSGT00950000182906.b.a ENSGT00510000048701 ENSGT00940000156778 ENSGT00530000063408.A ENSGT00940000158473.b ENSGT00940000161388 ENSGT00940000156283 ENSGT00390000008373 ENSGT00940000156638 ENSGT00940000157684 ENSGT00390000004803 Hystricomorpha_a ANCESTRAL SPECIES 30 ENSGT00880000138034 ENSGT00950000182836.b.b.b.b ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00990000203619.A.b.b.a #21 ENSGT00530000063927.a.a #22 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00940000162166 #26 ENSGT00390000014904 ENSGT00950000182906.b.a ENSGT00510000048701 ENSGT00940000156778 ENSGT00530000063408.A ENSGT00940000158473.b ENSGT00940000161388 ENSGT00940000156283 ENSGT00390000008373 ENSGT00940000156638 ENSGT00940000157684 ENSGT00390000004803 Hystricomorpha_b ANCESTRAL SPECIES 29 ENSGT00940000155208 ENSGT00880000138034 ENSGT00950000182836.b.b.b.b ENSGT00390000011034 #7 ENSGT00940000157330 #8 ENSGT00940000155310.b #9 ENSGT00390000009877 #10 ENSGT00940000156543 #11 ENSGT00940000157912 #12 ENSGT00390000018525.a.a #14 ENSGT00510000046988 #15 ENSGT00940000159956 #16 ENSGT00640000091563.a #18 ENSGT00390000007441 #19 ENSGT01030000234667.b #20 ENSGT00530000063927.a.a #22 ENSGT00530000063359.A #24 ENSGT00940000155237 #25 ENSGT00390000014904 ENSGT00950000182906.b.a ENSGT00510000048701 ENSGT00940000156778 ENSGT00530000063408.A ENSGT00940000158473.b ENSGT00940000161388 ENSGT00940000156283 ENSGT00390000008373 ENSGT00940000156638 ENSGT00940000157684 ENSGT00390000004803 ENSGT00950000183032.B.b.b Long-tailed chinchilla MODERN SPECIES 146 ENSCLAG00000002399 MAP3K4 (ENSCLAG00000008769) AGPAT4 (ENSCLAG00000008421) PRKN (ENSCLAG00000008284) #7 PACRG (ENSCLAG00000008105) #8 ENSCLAG00000006238 #9 C6orf118 (ENSCLAG00000006108) #10 PDE10A (ENSCLAG00000004872) #11 TBXT (ENSCLAG00000002632) #12 SFT2D1 (ENSCLAG00000002586) #14 MPC1 (ENSCLAG00000002442) #15 RPS6KA2 (ENSCLAG00000002285) #16 RNASET2 (ENSCLAG00000005811) #18 CEP43 (ENSCLAG00000005200) #19 CCR6 (ENSCLAG00000005134) #20 ENSCLAG00000004820 #22 UNC93A (ENSCLAG00000004396) #24 AFDN (ENSCLAG00000003013) #25 ADGB (ENSCLAG00000004642) STXBP5 (ENSCLAG00000004159) SASH1 (ENSCLAG00000003367) UST (ENSCLAG00000003051) TAB2 (ENSCLAG00000002977) ZC3H12D (ENSCLAG00000002831) PPIL4 (ENSCLAG00000003991) GINM1 (ENSCLAG00000003584) KATNA1 (ENSCLAG00000003505) LATS1 (ENSCLAG00000003449) NUP43 (ENSCLAG00000003394) PCMT1 (ENSCLAG00000003224) ENSCLAG00000003173 Guinea pig MODERN SPECIES 60 AGPAT4 (ENSCPOG00000006135) PRKN (ENSCPOG00000006136) #7 PACRG (ENSCPOG00000013410) #8 QKI (ENSCPOG00000003424) #9 C6orf118 (ENSCPOG00000008774) #10 PDE10A (ENSCPOG00000008783) #11 TBXT (ENSCPOG00000001358) #12 ENSCPOG00000000167 SFT2D1 (ENSCPOG00000031625) #14 MPC1 (ENSCPOG00000005208) #15 RPS6KA2 (ENSCPOG00000005210) #16 RNASET2 (ENSCPOG00000007899) #18 CEP43 (ENSCPOG00000036620) #19 CCR6 (ENSCPOG00000034828) #20 GPR31 (ENSCPOG00000001786) #21 ENSCPOG00000009004 #22 UNC93A (ENSCPOG00000031556) #24 AFDN (ENSCPOG00000008268) #25 ENSCPOG00000002358 #26 ENSCPOG00000002354 STXBP5 (ENSCPOG00000013005) SAMD5 (ENSCPOG00000036984) SASH1 (ENSCPOG00000001861) UST (ENSCPOG00000004092) TAB2 (ENSCPOG00000015012) ZC3H12D (ENSCPOG00000014608) PPIL4 (ENSCPOG00000032871) GINM1 (ENSCPOG00000008152) KATNA1 (ENSCPOG00000020826) LATS1 (ENSCPOG00000003577) ENSCPOG00000010815