Lepidosauria	ANCESTRAL SPECIES	21	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00950000182858.A.b.b #19	ENSGT00940000153246.b	ENSGT00950000182858.A.a.e ##19	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00390000018038	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000160710	ENSGT00940000159447	ENSGT00940000159387	ENSGT00530000063085.B	ENSGT00940000157589	ENSGT00940000159718
Episquamata	ANCESTRAL SPECIES	15	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00950000182858.A.b.b #19	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00390000018038	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36
Laterata	ANCESTRAL SPECIES	20	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000164784.e #11	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00950000182858.A.b.b #19	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36	ENSGT00930000151044 #37
Argentine black and white tegu	MODERN SPECIES	52	ENSSMRG00000007640 #7	BARHL1 (ENSSMRG00000007641) #8	DDX31 (ENSSMRG00000007644) #9	GTF3C4 (ENSSMRG00000007647) #10	ENSSMRG00000007648 #11	SPACA9 (ENSSMRG00000007649) #12	TSC1 (ENSSMRG00000007650) #13	GFI1B (ENSSMRG00000007655) #14	GTF3C5 (ENSSMRG00000007664) #15	CEL (ENSSMRG00000007678) #16	PIERCE1 (ENSSMRG00000007760) #17	RALGDS (ENSSMRG00000007784) #18	GBGT1 (ENSSMRG00000007794) #19	SURF6 (ENSSMRG00000007795) #20	MED22 (ENSSMRG00000007797) #21	RPL7A (ENSSMRG00000007800) #22	SURF1 (ENSSMRG00000007809) #23	SURF2 (ENSSMRG00000007810) #24	SURF4 (ENSSMRG00000007813) #25	REXO4 (ENSSMRG00000007816) #26	ENSSMRG00000007820 #27	ENSSMRG00000007824 #28	CACFD1 (ENSSMRG00000007825) #29	SLC2A6 (ENSSMRG00000007826) #30	RNF183 (ENSSMRG00000007832) #31	PRPF4 (ENSSMRG00000007834) #32	CDC26 (ENSSMRG00000007835) #33	SLC31A1 (ENSSMRG00000007836) #34	FKBP15 (ENSSMRG00000007842) #35	ENSSMRG00000007853 #36	LRSAM1 (ENSSMRG00000007855) #37
Common wall lizard	DUPLICATION
Common wall lizard	DUPLICATION
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	16	EPHA2 (ENSPMRG00000011820)	ENSPMRG00000011790	ENSPMRG00000011775	CPLANE2 (ENSPMRG00000011768)	FBXO42 (ENSPMRG00000011762)	SZRD1 (ENSPMRG00000011755)	NECAP2 (ENSPMRG00000011748)	CROCC (ENSPMRG00000011437)	SDHB (ENSPMRG00000011352)	ATP13A2 (ENSPMRG00000011327)	FICD (ENSPMRG00000011309)	CMKLR1 (ENSPMRG00000011304)	ENSPMRG00000011297	ENSPMRG00000011287	RPH3A (ENSPMRG00000011239)	ENSPMRG00000011210 #22	ENSPMRG00000011208 #22	PTPN11 (ENSPMRG00000011190)	RPL6 (ENSPMRG00000011176)	HECTD4 (ENSPMRG00000010340)	TRAFD1 (ENSPMRG00000010130)	NAA25 (ENSPMRG00000010053)	ERP29 (ENSPMRG00000010008)	ENSPMRG00000010002	TMEM116 (ENSPMRG00000009994)	ENSPMRG00000009981	ENSPMRG00000009980	ENSPMRG00000009974	MAPKAPK5 (ENSPMRG00000009962)	ALDH2 (ENSPMRG00000009948)	ENSPMRG00000009939
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000011790	ENSPMRG00000011775	CPLANE2 (ENSPMRG00000011768)	FBXO42 (ENSPMRG00000011762)	SZRD1 (ENSPMRG00000011755)	NECAP2 (ENSPMRG00000011748)	CROCC (ENSPMRG00000011437)	SDHB (ENSPMRG00000011352)	ATP13A2 (ENSPMRG00000011327)	FICD (ENSPMRG00000011309)	CMKLR1 (ENSPMRG00000011304)	ENSPMRG00000011297	ENSPMRG00000011287	RPH3A (ENSPMRG00000011239)	ENSPMRG00000011210 #22	ENSPMRG00000011208 #22	PTPN11 (ENSPMRG00000011190)	RPL6 (ENSPMRG00000011176)	HECTD4 (ENSPMRG00000010340)	TRAFD1 (ENSPMRG00000010130)	NAA25 (ENSPMRG00000010053)	ERP29 (ENSPMRG00000010008)	ENSPMRG00000010002	TMEM116 (ENSPMRG00000009994)	ENSPMRG00000009981	ENSPMRG00000009980	ENSPMRG00000009974	MAPKAPK5 (ENSPMRG00000009962)	ALDH2 (ENSPMRG00000009948)	ENSPMRG00000009939	ENSPMRG00000008437
Common wall lizard	MODERN SPECIES	419	DDX31 (ENSPMRG00000023121) #9	GTF3C4 (ENSPMRG00000023112) #10	ENSPMRG00000023108 #11	SPACA9 (ENSPMRG00000023096) #12	TSC1 (ENSPMRG00000023086) #13	ENSPMRG00000023082	ENSPMRG00000023077	GTF3C5 (ENSPMRG00000023072) #15	CEL (ENSPMRG00000023064) #16	ENSPMRG00000023056	RALGDS (ENSPMRG00000023032) #18	GBGT1 (ENSPMRG00000023014) #19	ENSPMRG00000023003	SURF6 (ENSPMRG00000022994) #20	ENSPMRG00000022992 #21	ENSPMRG00000022979 #22	SURF1 (ENSPMRG00000022973) #23	NTNG2 (ENSPMRG00000022966)	MED27 (ENSPMRG00000022959)	RAPGEF1 (ENSPMRG00000022822)	UCK1 (ENSPMRG00000022767)	POMT1 (ENSPMRG00000022702)	PRRC2B (ENSPMRG00000022671)	PLPP7 (ENSPMRG00000022662)	FAM78A (ENSPMRG00000022659)	ENSPMRG00000022635	AIF1L (ENSPMRG00000022615)	LAMC3 (ENSPMRG00000022606)	ENSPMRG00000022602	ADAMTS13 (ENSPMRG00000022507) #27	CACFD1 (ENSPMRG00000022472) #29
Common wall lizard	MODERN SPECIES	12	UVRAG (ENSPMRG00000000985)	ENSPMRG00000001018	ENSPMRG00000001026	WNT11 (ENSPMRG00000001043)	ENSPMRG00000001065	THAP12 (ENSPMRG00000001070)	EMSY (ENSPMRG00000001139)	ENSPMRG00000001213	ENSPMRG00000001232	ENSPMRG00000001299	TSKU (ENSPMRG00000001307)	CAPN5 (ENSPMRG00000001335)	MYO7A (ENSPMRG00000001422)	GDPD4 (ENSPMRG00000001524)	PAK1 (ENSPMRG00000001542)	ENSPMRG00000001565 #22	ENSPMRG00000001579	CLNS1A (ENSPMRG00000001591)	RSF1 (ENSPMRG00000001603)	AAMDC (ENSPMRG00000001616)	INTS4 (ENSPMRG00000001625)	KCTD14 (ENSPMRG00000001636)	ENSPMRG00000001644	ENSPMRG00000001647	ENSPMRG00000001650	ENSPMRG00000001658	ALG8 (ENSPMRG00000001672)	KCTD21 (ENSPMRG00000001728)	ENSPMRG00000001740	ENSPMRG00000001762	GAB2 (ENSPMRG00000001773)
Toxicofera	ANCESTRAL SPECIES	26	ENSGT00940000159729	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00390000018038	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36
Elapidae	ANCESTRAL SPECIES	18	ENSGT00940000159729.c	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00390000018038	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36
Elapidae_a	ANCESTRAL SPECIES	26	ENSGT00940000159729.c	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800 #24	ENSGT00530000064123 #25	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36	ENSGT00930000151044 #37
Acanthophiinae	ANCESTRAL SPECIES	27	ENSGT00940000159729.c	ENSGT00390000014476.a #7	ENSGT00940000160428 #8	ENSGT00550000075041 #9	ENSGT00390000011873 #10	ENSGT00940000161613	ENSGT00390000007746 #12	ENSGT00390000014148 #13	ENSGT00940000160010 #14	ENSGT00390000004458 #15	ENSGT00940000156231 #16	ENSGT00940000153181 #18	ENSGT00940000153246.b	ENSGT00390000006980 #20	ENSGT00390000004339 #21	ENSGT00940000153294 #22	ENSGT00530000064194 #23	ENSGT00390000016800.c #24	ENSGT00530000064123 #25	ENSGT00940000159607 #26	ENSGT00940000158379 #27	ENSGT00940000178229 #28	ENSGT00390000000529 #29	ENSGT00940000159976 #30	ENSGT00940000162965 #31	ENSGT00940000156006 #32	ENSGT00390000008457 #33	ENSGT00940000155147 #34	ENSGT00530000064286 #35	ENSGT00960000190875 #36	ENSGT00930000151044 #37
Mainland tiger snake	MODERN SPECIES	305														SURF6 (ENSNSUG00000008759) #20	MED22 (ENSNSUG00000008758) #21	RPL7A (ENSNSUG00000008753) #22	SURF1 (ENSNSUG00000008752) #23	SURF2 (ENSNSUG00000008751) #24	SURF4 (ENSNSUG00000008750) #25	REXO4 (ENSNSUG00000008749) #26	ADAMTS13 (ENSNSUG00000008745) #27	CACFD1 (ENSNSUG00000008744) #29	SLC2A6 (ENSNSUG00000008743) #30	RNF183 (ENSNSUG00000008742) #31	CDC26 (ENSNSUG00000008741) #33	PRPF4 (ENSNSUG00000008301) #32	SLC31A1 (ENSNSUG00000008300) #34	FKBP15 (ENSNSUG00000008299) #35	LRSAM1 (ENSNSUG00000008095) #37	RPL12 (ENSNSUG00000008093)	ENSNSUG00000008092
Eastern brown snake	MODERN SPECIES	54	SETX (ENSPTXG00000006442)	ENSPTXG00000006441	ENSPTXG00000006437 #7	BARHL1 (ENSPTXG00000006435) #8	ENSPTXG00000006434	GTF3C4 (ENSPTXG00000006433) #10	TSC1 (ENSPTXG00000006432) #13	GFI1B (ENSPTXG00000006431) #14	GTF3C5 (ENSPTXG00000006429) #15	CEL (ENSPTXG00000006097) #16	RALGDS (ENSPTXG00000006071) #18	ENSPTXG00000006070	SURF6 (ENSPTXG00000006069) #20	MED22 (ENSPTXG00000006068) #21	ENSPTXG00000006064	RPL7A (ENSPTXG00000006063) #22	SURF1 (ENSPTXG00000006062) #23	ENSPTXG00000006061 #24	SURF4 (ENSPTXG00000006060) #25	REXO4 (ENSPTXG00000006059) #26	ENSPTXG00000006058 #27	ENSPTXG00000006057 #28	CACFD1 (ENSPTXG00000006055) #29	SLC2A6 (ENSPTXG00000006054) #30	RNF183 (ENSPTXG00000006053) #31	PRPF4 (ENSPTXG00000017153) #32	CDC26 (ENSPTXG00000017151) #33	SLC31A1 (ENSPTXG00000017147) #34	FKBP15 (ENSPTXG00000015090) #35	ENSPTXG00000015060 #36	LRSAM1 (ENSPTXG00000015053) #37
Blue-lipped sea krait	MODERN SPECIES	7574										GTF3C5 (ENSLLTG00000015919) #15	CEL (ENSLLTG00000015396) #16	RALGDS (ENSLLTG00000015373) #18	ENSLLTG00000015346	SURF6 (ENSLLTG00000015337) #20	MED22 (ENSLLTG00000015334) #21	RPL7A (ENSLLTG00000015320) #22	SURF1 (ENSLLTG00000015319) #23	SURF2 (ENSLLTG00000015314) #24	SURF4 (ENSLLTG00000015309) #25	REXO4 (ENSLLTG00000015305) #26	ADAMTS13 (ENSLLTG00000015297) #27
Indian cobra	MODERN SPECIES	8	PRRT1B (ENSNNAG00000017829)	ENSNNAG00000017831	NTNG2 (ENSNNAG00000017832)	SETX (ENSNNAG00000017835)	ENSNNAG00000017840	ENSNNAG00000017847	ENSNNAG00000017849	TSC1 (ENSNNAG00000003400) #13	SPACA9 (ENSNNAG00000003551) #12	GFI1B (ENSNNAG00000003570) #14	GTF3C5 (ENSNNAG00000003589) #15	ENSNNAG00000003615 #18	ENSNNAG00000003659	SURF6 (ENSNNAG00000003691) #20	MED22 (ENSNNAG00000003707) #21	RPL7A (ENSNNAG00000003733) #22	SURF1 (ENSNNAG00000003784) #23	SURF2 (ENSNNAG00000003801) #24	SURF4 (ENSNNAG00000003827) #25	STKLD1 (ENSNNAG00000003875)	REXO4 (ENSNNAG00000004002) #26	ADAMTS13 (ENSNNAG00000004087) #27	CACFD1 (ENSNNAG00000004619) #29	SLC2A6 (ENSNNAG00000004629) #30	RNF183 (ENSNNAG00000004642) #31	PRPF4 (ENSNNAG00000004708) #32	CDC26 (ENSNNAG00000005094) #33	SLC31A1 (ENSNNAG00000005108) #34	FKBP15 (ENSNNAG00000005131) #35	ENSNNAG00000005182 #36	LRSAM1 (ENSNNAG00000005194) #37
tuatara	MODERN SPECIES	585	SETX (ENSSPUG00000016332)	TTF1 (ENSSPUG00000016225)	CFAP77 (ENSSPUG00000016191) #7	DDX31 (ENSSPUG00000016144) #9	AK8 (ENSSPUG00000016094)	SPACA9 (ENSSPUG00000016070) #12	TSC1 (ENSSPUG00000016052) #13	GFI1B (ENSSPUG00000016039) #14	GTF3C5 (ENSSPUG00000016018) #15	CEL (ENSSPUG00000016006) #16	RALGDS (ENSSPUG00000015985) #18	GBGT1 (ENSSPUG00000015979) #19	ABO (ENSSPUG00000015966) ##19	SURF6 (ENSSPUG00000015954) #20	MED22 (ENSSPUG00000015941) #21	RPL7A (ENSSPUG00000015903) #22	SURF1 (ENSSPUG00000015894) #23	SURF2 (ENSSPUG00000015887) #24	SURF4 (ENSSPUG00000015878) #25	REXO4 (ENSSPUG00000015868) #26