Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154186.a #22
Gnathostomata	ANCESTRAL SPECIES	1493															ENSGT00390000001858	ENSGT00940000154186.a #22
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00390000008178	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Sarcopterygii	ANCESTRAL SPECIES	23	ENSGT00390000008178	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00390000008178	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Amniota	ANCESTRAL SPECIES	12	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Mammalia	ANCESTRAL SPECIES	22	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Theria	ANCESTRAL SPECIES	13	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000168989	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00390000003682	ENSGT00940000153876.B	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Suina	ANCESTRAL SPECIES	13	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Pig	MODERN SPECIES	11	FAM161A (ENSSSCG00000008378) #7	CCT4 (ENSSSCG00000008377) #8	COMMD1 (ENSSSCG00000008376) #9	B3GNT2 (ENSSSCG00000008374) #10	ENSSSCG00000028518 #11	TMEM17 (ENSSSCG00000026713) #12	EHBP1 (ENSSSCG00000008372) #13	OTX1 (ENSSSCG00000037564) #14	ENSSSCG00000030195 #15	WDPCP (ENSSSCG00000057114) #16	MDH1 (ENSSSCG00000025751) #17	UGP2 (ENSSSCG00000008368) #18	VPS54 (ENSSSCG00000027509) #19	PELI1 (ENSSSCG00000028947) #20	LGALSL (ENSSSCG00000030005) #21	AFTPH (ENSSSCG00000008363) #22	SERTAD2 (ENSSSCG00000037002) #23	SLC1A4 (ENSSSCG00000028282) #24	CEP68 (ENSSSCG00000008360) #25	RAB1A (ENSSSCG00000008359) #26	ACTR2 (ENSSSCG00000008358) #27	SPRED2 (ENSSSCG00000008357) #28	ENSSSCG00000044348 #29	MEIS1 (ENSSSCG00000039161) #30	ETAA1 (ENSSSCG00000023908) #31	C1D (ENSSSCG00000039331) #32	DNAAF10 (ENSSSCG00000008353) #33	PNO1 (ENSSSCG00000008352) #34	PPP3R1 (ENSSSCG00000036115) #35	CNRIP1 (ENSSSCG00000008349) #36	PLEK (ENSSSCG00000008348) #37
Chacoan peccary	MODERN SPECIES	777	XPO1 (ENSCWAG00000014013)	FAM161A (ENSCWAG00000014151) #7	CCT4 (ENSCWAG00000014318) #8	ENSCWAG00000014428 #9	B3GNT2 (ENSCWAG00000014453) #10	ENSCWAG00000014470	TMEM17 (ENSCWAG00000014499) #12	EHBP1 (ENSCWAG00000014544) #13	OTX1 (ENSCWAG00000014783) #14	ENSCWAG00000014828 #16	MDH1 (ENSCWAG00000014856) #17	UGP2 (ENSCWAG00000014887) #18	VPS54 (ENSCWAG00000015086) #19	PELI1 (ENSCWAG00000015638) #20	LGALSL (ENSCWAG00000015689) #21	AFTPH (ENSCWAG00000015787) #22	SERTAD2 (ENSCWAG00000015818) #23	SLC1A4 (ENSCWAG00000015836) #24	CEP68 (ENSCWAG00000015895) #25	RAB1A (ENSCWAG00000016000) #26	ENSCWAG00000016093	ACTR2 (ENSCWAG00000016124) #27	ENSCWAG00000016192	SPRED2 (ENSCWAG00000016216) #28	MEIS1 (ENSCWAG00000016382) #30	ETAA1 (ENSCWAG00000017059) #31	C1D (ENSCWAG00000017088) #32	DNAAF10 (ENSCWAG00000017128) #33	PNO1 (ENSCWAG00000017164) #34	PPP3R1 (ENSCWAG00000017182) #35	CNRIP1 (ENSCWAG00000017220) #36
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00390000003682.gb.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B.i #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.l #17	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000003682.gb.a.a.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Dolphin	MODERN SPECIES	4299																AFTPH (ENSTTRG00000003606) #22	SERTAD2 (ENSTTRG00000003609) #23
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.l #17	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Vaquita	MODERN SPECIES	4	CCT4 (ENSPSNG00000014061) #8	COMMD1 (ENSPSNG00000014183) #9	ENSPSNG00000014227	B3GNT2 (ENSPSNG00000014249) #10	TMEM17 (ENSPSNG00000014288) #12	ENSPSNG00000014346	EHBP1 (ENSPSNG00000014468) #13	OTX1 (ENSPSNG00000014688) #14	WDPCP (ENSPSNG00000014770) #16	ENSPSNG00000015180	MDH1 (ENSPSNG00000015270) #17	ENSPSNG00000015479	VPS54 (ENSPSNG00000015574) #19	PELI1 (ENSPSNG00000016122) #20	LGALSL (ENSPSNG00000016184) #21	AFTPH (ENSPSNG00000016250) #22	SERTAD2 (ENSPSNG00000016327) #23	SLC1A4 (ENSPSNG00000016415) #24	CEP68 (ENSPSNG00000016545) #25	RAB1A (ENSPSNG00000016689) #26	ACTR2 (ENSPSNG00000016825) #27	SPRED2 (ENSPSNG00000016931) #28	ENSPSNG00000017076	MEIS1 (ENSPSNG00000017177) #30	ETAA1 (ENSPSNG00000017386) #31	C1D (ENSPSNG00000017424) #32	DNAAF10 (ENSPSNG00000017470) #33	PNO1 (ENSPSNG00000017552) #34	PPP3R1 (ENSPSNG00000017608) #35	CNRIP1 (ENSPSNG00000017800) #36	PLEK (ENSPSNG00000017885) #37
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.l #17	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000003682.gb.a.a.b.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Narwhal	MODERN SPECIES	305	FAM161A (ENSMMNG00015009266) #7	CCT4 (ENSMMNG00015009244) #8	COMMD1 (ENSMMNG00015009232) #9	B3GNT2 (ENSMMNG00015009227) #10	TMEM17 (ENSMMNG00015009216) #12	ENSMMNG00015009209	EHBP1 (ENSMMNG00015009174) #13	OTX1 (ENSMMNG00015009119) #14	WDPCP (ENSMMNG00015009094) #16	ENSMMNG00015009066 #17	PHPT1 (ENSMMNG00015009040)	ENSMMNG00015009005 #18	VPS54 (ENSMMNG00015016195) #19	PELI1 (ENSMMNG00015016144) #20	LGALSL (ENSMMNG00015016100) #21	AFTPH (ENSMMNG00015016029) #22	SERTAD2 (ENSMMNG00015016005) #23	SLC1A4 (ENSMMNG00015015960) #24	CEP68 (ENSMMNG00015015909) #25	RAB1A (ENSMMNG00015015848) #26	ACTR2 (ENSMMNG00015015753) #27	SPRED2 (ENSMMNG00015015689) #28	ENSMMNG00015015655	MEIS1 (ENSMMNG00015015523) #30	ETAA1 (ENSMMNG00015015495) #31	C1D (ENSMMNG00015015470) #32	DNAAF10 (ENSMMNG00015015443) #33	PNO1 (ENSMMNG00015015433) #34	PPP3R1 (ENSMMNG00015015405) #35	CNRIP1 (ENSMMNG00015015380) #36	PLEK (ENSMMNG00015015351) #37
Beluga whale	MODERN SPECIES	42	CCT4 (ENSDLEG00000014042) #8	COMMD1 (ENSDLEG00000014033) #9	B3GNT2 (ENSDLEG00000014023) #10	TMEM17 (ENSDLEG00000014013) #12	ENSDLEG00000014005	EHBP1 (ENSDLEG00000013833) #13	OTX1 (ENSDLEG00000013795) #14	WDPCP (ENSDLEG00000013723) #16	MDH1 (ENSDLEG00000013685) #17	ENSDLEG00000013659	UGP2 (ENSDLEG00000013637) #18	ENSDLEG00000013630	VPS54 (ENSDLEG00000013588) #19	PELI1 (ENSDLEG00000013564) #20	LGALSL (ENSDLEG00000013531) #21	AFTPH (ENSDLEG00000013504) #22	SERTAD2 (ENSDLEG00000013497) #23	SLC1A4 (ENSDLEG00000013482) #24	CEP68 (ENSDLEG00000013462) #25	RAB1A (ENSDLEG00000013451) #26	ACTR2 (ENSDLEG00000013424) #27	SPRED2 (ENSDLEG00000013406) #28	MEIS1 (ENSDLEG00000013356) #30	ETAA1 (ENSDLEG00000013344) #31	C1D (ENSDLEG00000013334) #32	WDR92 (ENSDLEG00000005842) #33	PNO1 (ENSDLEG00000005835) #34	PPP3R1 (ENSDLEG00000005831) #35	CNRIP1 (ENSDLEG00000005826) #36	PLEK (ENSDLEG00000005814) #37	FBXO48 (ENSDLEG00000005798)
Sperm whale	MODERN SPECIES	3	FAM161A (ENSPCTG00005006353) #7	CCT4 (ENSPCTG00005006446) #8	COMMD1 (ENSPCTG00005006502) #9	B3GNT2 (ENSPCTG00005006518) #10	TMEM17 (ENSPCTG00005006531) #12	EHBP1 (ENSPCTG00005006603) #13	OTX1 (ENSPCTG00005006769) #14	WDPCP (ENSPCTG00005006829) #16	MDH1 (ENSPCTG00005007119) #17	ENSPCTG00005007304	UGP2 (ENSPCTG00005007338) #18	VPS54 (ENSPCTG00005007443) #19	PELI1 (ENSPCTG00005007650) #20	ENSPCTG00005007660	LGALSL (ENSPCTG00005007670) #21	AFTPH (ENSPCTG00005007713) #22	SERTAD2 (ENSPCTG00005007784) #23	ENSPCTG00005007798 #24	CEP68 (ENSPCTG00005007824) #25	RAB1A (ENSPCTG00005007858) #26	ACTR2 (ENSPCTG00005007920) #27	SPRED2 (ENSPCTG00005008031) #28	ENSPCTG00005008120	ENSPCTG00005008130	MEIS1 (ENSPCTG00005008167) #30	ETAA1 (ENSPCTG00005008337) #31	C1D (ENSPCTG00005008403) #32	ENSPCTG00005008480	WDR92 (ENSPCTG00005008494) #33	PNO1 (ENSPCTG00005008568) #34	PPP3R1 (ENSPCTG00005008639) #35
Blue whale	MODERN SPECIES	4	ENSBMSG00010017432 #7	CCT4 (ENSBMSG00010017396) #8	COMMD1 (ENSBMSG00010017362) #9	ENSBMSG00010017350	B3GNT2 (ENSBMSG00010017335) #10	TMEM17 (ENSBMSG00010017316) #12	EHBP1 (ENSBMSG00010016917) #13	OTX1 (ENSBMSG00010016810) #14	WDPCP (ENSBMSG00010016471) #16	MDH1 (ENSBMSG00010016335) #17	ENSBMSG00010016142 #18	VPS54 (ENSBMSG00010015929) #19	PELI1 (ENSBMSG00010015886) #20	LGALSL (ENSBMSG00010015854) #21	ENSBMSG00010015828	AFTPH (ENSBMSG00010015789) #22	SERTAD2 (ENSBMSG00010015761) #23	ENSBMSG00010015739 #24	CEP68 (ENSBMSG00010015630) #25	RAB1A (ENSBMSG00010015536) #26	ACTR2 (ENSBMSG00010015452) #27	ENSBMSG00010015420	SPRED2 (ENSBMSG00010015313) #28	MEIS1 (ENSBMSG00010014951) #30	ETAA1 (ENSBMSG00010014898) #31	C1D (ENSBMSG00010014843) #32	DNAAF10 (ENSBMSG00010014807) #33	PNO1 (ENSBMSG00010014773) #34	PPP3R1 (ENSBMSG00010014702) #35	CNRIP1 (ENSBMSG00010014640) #36	PLEK (ENSBMSG00010014580) #37
Pecora	ANCESTRAL SPECIES	5	ENSGT00390000009268.db.b	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Yarkand deer	MODERN SPECIES	2	COMMD1 (ENSCHYG00000006201) #9	B3GNT2 (ENSCHYG00000006215) #10	TMEM17 (ENSCHYG00000006260) #12	EHBP1 (ENSCHYG00000006348) #13	OTX1 (ENSCHYG00000006734) #14	WDPCP (ENSCHYG00000006760) #16	ENSCHYG00000006867	MDH1 (ENSCHYG00000006887) #17	ENSCHYG00000007056	UGP2 (ENSCHYG00000007083) #18	VPS54 (ENSCHYG00000007200) #19	ENSCHYG00000007473	PELI1 (ENSCHYG00000007493) #20	ENSCHYG00000007544	LGALSL (ENSCHYG00000007576) #21	AFTPH (ENSCHYG00000007630) #22	ENSCHYG00000007734	SERTAD2 (ENSCHYG00000007769) #23	ENSCHYG00000007790	SLC1A4 (ENSCHYG00000007819) #24	CEP68 (ENSCHYG00000007916) #25	RAB1A (ENSCHYG00000007988) #26	ACTR2 (ENSCHYG00000008112) #27	SPRED2 (ENSCHYG00000008346) #28	ENSCHYG00000008453	MEIS1 (ENSCHYG00000008476) #30	ETAA1 (ENSCHYG00000008673) #31	C1D (ENSCHYG00000008709) #32	ENSCHYG00000008783 #33	PNO1 (ENSCHYG00000009166) #34	CNRIP1 (ENSCHYG00000009217) #36
Percora_a	ANCESTRAL SPECIES	13	ENSGT00960000190232	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Bovidae	ANCESTRAL SPECIES	5	ENSGT00960000190232	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT00390000002517.a.b.a.g.a.b	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Bos	ANCESTRAL SPECIES	5	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00390000011179.o.a	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556.ib #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00390000011179.o.a	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556.ib #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Cow	MODERN SPECIES	2	ENSBTAG00000049111	CCT4 (ENSBTAG00000004531) #8	COMMD1 (ENSBTAG00000019867) #9	B3GNT2 (ENSBTAG00000018046) #10	TMEM17 (ENSBTAG00000000899) #12	EHBP1 (ENSBTAG00000044173) #13	OTX1 (ENSBTAG00000006760) #14	WDPCP (ENSBTAG00000005151) #16	ENSBTAG00000023318	MDH1 (ENSBTAG00000019295) #17	UGP2 (ENSBTAG00000000111) #18	VPS54 (ENSBTAG00000000115) #19	PELI1 (ENSBTAG00000020865) #20	ENSBTAG00000053585	LGALSL (ENSBTAG00000055296) #21	AFTPH (ENSBTAG00000009299) #22	SERTAD2 (ENSBTAG00000049341) #23	ENSBTAG00000050435	SLC1A4 (ENSBTAG00000007763) #24	CEP68 (ENSBTAG00000016717) #25	RAB1A (ENSBTAG00000016720) #26	ACTR2 (ENSBTAG00000009761) #27	SPRED2 (ENSBTAG00000019456) #28	MEIS1 (ENSBTAG00000008448) #30	ETAA1 (ENSBTAG00000011727) #31	C1D (ENSBTAG00000049002) #32	DNAAF10 (ENSBTAG00000010595) #33	PNO1 (ENSBTAG00000010604) #34	PPP3R1 (ENSBTAG00000010619) #35	CNRIP1 (ENSBTAG00000001408) #36	PLEK (ENSBTAG00000009658) #37
Hybrid Bos Indicus	MODERN SPECIES	2	ENSBIXG00005006710	CCT4 (ENSBIXG00005009489) #8	COMMD1 (ENSBIXG00005009417) #9	B3GNT2 (ENSBIXG00005005908) #10	TMEM17 (ENSBIXG00005000490) #12	EHBP1 (ENSBIXG00005000484) #13	ENSBIXG00005005799	OTX1 (ENSBIXG00005009282) #14	WDPCP (ENSBIXG00005009244) #16	MRPS24 (ENSBIXG00005000425)	MDH1 (ENSBIXG00005009206) #17	UGP2 (ENSBIXG00005009159) #18	VPS54 (ENSBIXG00005009062) #19	PELI1 (ENSBIXG00005008978) #20	ENSBIXG00005008944 #21	AFTPH (ENSBIXG00005008912) #22	SERTAD2 (ENSBIXG00005008870) #23	RAB1A (ENSBIXG00005000282) #26	ENSBIXG00005008797	SLC1A4 (ENSBIXG00005008778) #24	CEP68 (ENSBIXG00005006085) #25	ACTR2 (ENSBIXG00005008678) #27	SPRED2 (ENSBIXG00005000234) #28	MEIS1 (ENSBIXG00005000216) #30	ETAA1 (ENSBIXG00005008485) #31	C1D (ENSBIXG00005000197) #32	DNAAF10 (ENSBIXG00005008434) #33	PNO1 (ENSBIXG00005000175) #34	ENSBIXG00005000174 #36	ENSBIXG00005008358	PLEK (ENSBIXG00005008346) #37
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000168009	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00390000011179.o.a	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556.ib #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Wild yak	MODERN SPECIES	436															LGALSL (ENSBMUG00000004289) #21	AFTPH (ENSBMUG00000004306) #22
Domestic yak	MODERN SPECIES	28	CCT4 (ENSBGRG00000009171) #8	COMMD1 (ENSBGRG00000009496) #9	B3GNT2 (ENSBGRG00000009630) #10	EHBP1 (ENSBGRG00000009676) #13	TMEM17 (ENSBGRG00000009894) #12	ENSBGRG00000009929	OTX1 (ENSBGRG00000009943) #14	WDPCP (ENSBGRG00000009982) #16	MRPS24 (ENSBGRG00000010129)	MDH1 (ENSBGRG00000010198) #17	ENSBGRG00000010353	UGP2 (ENSBGRG00000010367) #18	VPS54 (ENSBGRG00000010687) #19	PELI1 (ENSBGRG00000011236) #20	ENSBGRG00000011374 #21	AFTPH (ENSBGRG00000011500) #22	SERTAD2 (ENSBGRG00000011678) #23	SLC1A4 (ENSBGRG00000011713) #24	CEP68 (ENSBGRG00000011823) #25	RAB1A (ENSBGRG00000012081) #26	ACTR2 (ENSBGRG00000012280) #27	SPRED2 (ENSBGRG00000012585) #28	MEIS1 (ENSBGRG00000012913) #30	ENSBGRG00000013128	ETAA1 (ENSBGRG00000013146) #31	ENSBGRG00000013266	C1D (ENSBGRG00000013288) #32	DNAAF10 (ENSBGRG00000013337) #33	PNO1 (ENSBGRG00000003558) #34	CNRIP1 (ENSBGRG00000003591) #36	PLEK (ENSBGRG00000003648) #37
American bison	MODERN SPECIES	3346	ENSBBBG00000016270	FAM161A (ENSBBBG00000016265) #7	CCT4 (ENSBBBG00000016241) #8	COMMD1 (ENSBBBG00000016189) #9	B3GNT2 (ENSBBBG00000000770) #10	ENSBBBG00000016179	TMEM17 (ENSBBBG00000016175) #12	EHBP1 (ENSBBBG00000016143) #13	OTX1 (ENSBBBG00000015949) #14	WDPCP (ENSBBBG00000015935) #16	MDH1 (ENSBBBG00000015910) #17	UGP2 (ENSBBBG00000015846) #18	VPS54 (ENSBBBG00000015810) #19	PELI1 (ENSBBBG00000015700) #20	LGALSL (ENSBBBG00000003917) #21	AFTPH (ENSBBBG00000015672) #22	SLC1A4 (ENSBBBG00000003906) #24	CEP68 (ENSBBBG00000015639) #25	RAB1A (ENSBBBG00000015620) #26	ENSBBBG00000003899 #27	SPRED2 (ENSBBBG00000003896) #28	MEIS1 (ENSBBBG00000000788) #30
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000153408.B	ENSGT00960000190232	ENSGT00940000157824 #7	ENSGT00550000074956.w #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.i #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337.h #21	ENSGT00940000154186.a #22	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Goat	MODERN SPECIES	2	ENSCHIG00000024725	FAM161A (ENSCHIG00000013966) #7	ENSCHIG00000014125 #8	COMMD1 (ENSCHIG00000017790) #9	B3GNT2 (ENSCHIG00000009561) #10	TMEM17 (ENSCHIG00000012499) #12	EHBP1 (ENSCHIG00000013762) #13	OTX1 (ENSCHIG00000017955) #14	WDPCP (ENSCHIG00000018963) #16	ENSCHIG00000015525 #17	UGP2 (ENSCHIG00000021810) #18	VPS54 (ENSCHIG00000010990) #19	ENSCHIG00000003100	PELI1 (ENSCHIG00000022027) #20	LGALSL (ENSCHIG00000026638) #21	AFTPH (ENSCHIG00000009404) #22	ENSCHIG00000007620	SLC1A4 (ENSCHIG00000025336) #24	CEP68 (ENSCHIG00000025433) #25	RAB1A (ENSCHIG00000014060) #26	ACTR2 (ENSCHIG00000014272) #27	ENSCHIG00000027162	SPRED2 (ENSCHIG00000013086) #28	MEIS1 (ENSCHIG00000027207) #30	ETAA1 (ENSCHIG00000027011) #31	C1D (ENSCHIG00000025729) #32	DNAAF10 (ENSCHIG00000022762) #33	PNO1 (ENSCHIG00000012839) #34	PPP3R1 (ENSCHIG00000004688) #35	CNRIP1 (ENSCHIG00000017116) #36	PLEK (ENSCHIG00000017674) #37
Siberian musk deer	MODERN SPECIES	240	ENSMMSG00000008623	FAM161A (ENSMMSG00000008531) #7	ENSMMSG00000008359 #8	COMMD1 (ENSMMSG00000008325) #9	B3GNT2 (ENSMMSG00000008312) #10	ENSMMSG00000008292	TMEM17 (ENSMMSG00000008258) #12	EHBP1 (ENSMMSG00000008127) #13	OTX1 (ENSMMSG00000008093) #14	WDPCP (ENSMMSG00000008007) #16	MDH1 (ENSMMSG00000007784) #17	UGP2 (ENSMMSG00000007620) #18	VPS54 (ENSMMSG00000007345) #19	PELI1 (ENSMMSG00000007255) #20	LGALSL (ENSMMSG00000007219) #21	AFTPH (ENSMMSG00000007162) #22	SERTAD2 (ENSMMSG00000007146) #23	ENSMMSG00000007124	SLC1A4 (ENSMMSG00000007010) #24	CEP68 (ENSMMSG00000006928) #25	RAB1A (ENSMMSG00000006809) #26	ENSMMSG00000006773	ACTR2 (ENSMMSG00000006727) #27	SPRED2 (ENSMMSG00000006652) #28	MEIS1 (ENSMMSG00000006369) #30	ETAA1 (ENSMMSG00000006322) #31	ENSMMSG00000006311	ENSMMSG00000006279	C1D (ENSMMSG00000011514) #32	DNAAF10 (ENSMMSG00000011471) #33	PNO1 (ENSMMSG00000011455) #34
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Arabian camel	MODERN SPECIES	6	XPO1 (ENSCDRG00005004581)	FAM161A (ENSCDRG00005004663) #7	CCT4 (ENSCDRG00005004760) #8	COMMD1 (ENSCDRG00005004907) #9	B3GNT2 (ENSCDRG00005004917) #10	TMEM17 (ENSCDRG00005004930) #12	ENSCDRG00005004963	EHBP1 (ENSCDRG00005004989) #13	OTX1 (ENSCDRG00005005204) #14	WDPCP (ENSCDRG00005005228) #16	MDH1 (ENSCDRG00005005489) #17	UGP2 (ENSCDRG00005005735) #18	VPS54 (ENSCDRG00005005842) #19	PELI1 (ENSCDRG00005006069) #20	LGALSL (ENSCDRG00005006106) #21	AFTPH (ENSCDRG00005006174) #22	SLC1A4 (ENSCDRG00005006273) #24	CEP68 (ENSCDRG00005006344) #25	RAB1A (ENSCDRG00005006403) #26	ACTR2 (ENSCDRG00005006571) #27	SPRED2 (ENSCDRG00005006696) #28	MEIS1 (ENSCDRG00005006803) #30	ENSCDRG00005007509	ETAA1 (ENSCDRG00005007526) #31	C1D (ENSCDRG00005007559) #32	DNAAF10 (ENSCDRG00005007600) #33	PNO1 (ENSCDRG00005007641) #34	PPP3R1 (ENSCDRG00005007714) #35	CNRIP1 (ENSCDRG00005007885) #36	PLEK (ENSCDRG00005007914) #37	FBXO48 (ENSCDRG00005007956)
Alpaca	MODERN SPECIES	76															LGALSL (ENSVPAG00000010514) #21	AFTPH (ENSVPAG00000010515) #22	SERTAD2 (ENSVPAG00000010517) #23
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Carnivora	ANCESTRAL SPECIES	19	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Caniformia	ANCESTRAL SPECIES	18	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.p #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.x #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Ursus	ANCESTRAL SPECIES	20	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00390000009819.a.a.o	ENSGT00530000063410.a.p #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.x #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248	ENSGT00390000010591
Polar bear	MODERN SPECIES	223	ENSUMAG00000019866	FAM161A (ENSUMAG00000019872) #7	CCT4 (ENSUMAG00000019983) #8	COMMD1 (ENSUMAG00000020922) #9	B3GNT2 (ENSUMAG00000020928) #10	TMEM17 (ENSUMAG00000020931) #12	EHBP1 (ENSUMAG00000020940) #13	ENSUMAG00000020944 #14	WDPCP (ENSUMAG00000020957) #16	ENSUMAG00000020964	MDH1 (ENSUMAG00000020965) #17	UGP2 (ENSUMAG00000020975) #18	VPS54 (ENSUMAG00000020982) #19	PELI1 (ENSUMAG00000021002) #20	LGALSL (ENSUMAG00000021007) #21	AFTPH (ENSUMAG00000021014) #22	ENSUMAG00000021019	SLC1A4 (ENSUMAG00000021032) #24	CEP68 (ENSUMAG00000021035) #25	RAB1A (ENSUMAG00000021038) #26	ENSUMAG00000021041	ACTR2 (ENSUMAG00000021042) #27	SPRED2 (ENSUMAG00000021053) #28	MEIS1 (ENSUMAG00000021098) #30	ETAA1 (ENSUMAG00000021106) #31	C1D (ENSUMAG00000021118) #32	DNAAF10 (ENSUMAG00000021123) #33	PNO1 (ENSUMAG00000021126) #34	PPP3R1 (ENSUMAG00000021129) #35	CNRIP1 (ENSUMAG00000021144) #36	PLEK (ENSUMAG00000021146) #37
American black bear	MODERN SPECIES	76											UGP2 (ENSUAMG00000020332) #18	VPS54 (ENSUAMG00000020329) #19	PELI1 (ENSUAMG00000020326) #20	LGALSL (ENSUAMG00000020323) #21	ENSUAMG00000020321	AFTPH (ENSUAMG00000020320) #22
Giant Panda	MODERN SPECIES	14	ENSAMEG00000018248	USP34 (ENSAMEG00000018249)	XPO1 (ENSAMEG00000003460)	FAM161A (ENSAMEG00000003523) #7	CCT4 (ENSAMEG00000003530) #8	COMMD1 (ENSAMEG00000008249) #9	B3GNT2 (ENSAMEG00000005508) #10	TMEM17 (ENSAMEG00000005503) #12	EHBP1 (ENSAMEG00000005488) #13	OTX1 (ENSAMEG00000026277) #14	WDPCP (ENSAMEG00000005449) #16	MDH1 (ENSAMEG00000005414) #17	ENSAMEG00000027202	PELI1 (ENSAMEG00000001167) #20	LGALSL (ENSAMEG00000027975) #21	AFTPH (ENSAMEG00000001080) #22	SERTAD2 (ENSAMEG00000028964) #23	SLC1A4 (ENSAMEG00000001092) #24	CEP68 (ENSAMEG00000001121) #25	RAB1A (ENSAMEG00000026261) #26	ENSAMEG00000031136	ENSAMEG00000024763	ENSAMEG00000015749 #27	ENSAMEG00000015767 #28	ENSAMEG00000029782	MEIS1 (ENSAMEG00000015779) #30	ETAA1 (ENSAMEG00000015785) #31	C1D (ENSAMEG00000004859) #32	DNAAF10 (ENSAMEG00000004868) #33	PNO1 (ENSAMEG00000004897) #34	PPP3R1 (ENSAMEG00000027372) #35
Mustelinae	ANCESTRAL SPECIES	16	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000010591
American mink	MODERN SPECIES	268									WDPCP (ENSNVIG00000010207) #16	MDH1 (ENSNVIG00000010261) #17	ENSNVIG00000010282	UGP2 (ENSNVIG00000010305) #18	VPS54 (ENSNVIG00000010360) #19	PELI1 (ENSNVIG00000010542) #20	LGALSL (ENSNVIG00000010559) #21	AFTPH (ENSNVIG00000010584) #22	SERTAD2 (ENSNVIG00000010622) #23	ARHGAP24 (ENSNVIG00000010647)	MAPK10 (ENSNVIG00000010737)	ENSNVIG00000011131
Ferret	MODERN SPECIES	169	B3GNT2 (ENSMPUG00000018818) #10	ENSMPUG00000005847	TMEM17 (ENSMPUG00000005851) #12	ENSMPUG00000005871	EHBP1 (ENSMPUG00000005877) #13	OTX1 (ENSMPUG00000005901) #14	ENSMPUG00000005912	WDPCP (ENSMPUG00000005918) #16	MDH1 (ENSMPUG00000005929) #17	ENSMPUG00000005940	UGP2 (ENSMPUG00000005966) #18	VPS54 (ENSMPUG00000006057) #19	PELI1 (ENSMPUG00000006068) #20	ENSMPUG00000006072	LGALSL (ENSMPUG00000006075) #21	AFTPH (ENSMPUG00000006081) #22	SERTAD2 (ENSMPUG00000018821) #23	ENSMPUG00000006090	ENSMPUG00000006094	SLC1A4 (ENSMPUG00000006098) #24	CEP68 (ENSMPUG00000006108) #25	RAB1A (ENSMPUG00000006139) #26	ACTR2 (ENSMPUG00000006176) #27	SPRED2 (ENSMPUG00000006186) #28	MEIS1 (ENSMPUG00000006198) #30	ETAA1 (ENSMPUG00000006214) #31	C1D (ENSMPUG00000006224) #32	DNAAF10 (ENSMPUG00000006235) #33	ENSMPUG00000006244 #34	PPP3R1 (ENSMPUG00000006250) #35	CNRIP1 (ENSMPUG00000006263) #36
Canidae	ANCESTRAL SPECIES	10	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #30	ENSGT00390000017839.o.a	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00940000154546	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00390000017004.a.a.q.a	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #30	ENSGT00390000017839.o.a	ENSGT00390000009597 #31	ENSGT00950000183010.a.a.a.a.c.b.d.a.a	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34
Dingo	MODERN SPECIES	307	FAM161A (ENSCAFG00020026916) #7	ENSCAFG00020026918 #8	COMMD1 (ENSCAFG00020026920) #9	B3GNT2 (ENSCAFG00020026921) #10	TMEM17 (ENSCAFG00020026923) #12	EHBP1 (ENSCAFG00020026924) #13	OTX1 (ENSCAFG00020026926) #14	WDPCP (ENSCAFG00020026927) #16	ENSCAFG00020026930	ENSCAFG00020026931	MDH1 (ENSCAFG00020026933) #17	UGP2 (ENSCAFG00020026936) #18	VPS54 (ENSCAFG00020026938) #19	PELI1 (ENSCAFG00020026939) #20	LGALSL (ENSCAFG00020026947) #21	AFTPH (ENSCAFG00020026953) #22	SLC1A4 (ENSCAFG00020026962) #24	CEP68 (ENSCAFG00020026969) #25	RAB1A (ENSCAFG00020026971) #26	ENSCAFG00020026973	ACTR2 (ENSCAFG00020026978) #27	ENSCAFG00020026981	SPRED2 (ENSCAFG00020026983) #28	ENSCAFG00020026985	ENSCAFG00020026987	MEIS1 (ENSCAFG00020026989) #30	ENSCAFG00020026992	ETAA1 (ENSCAFG00020026994) #31	ENSCAFG00020026995	C1D (ENSCAFG00020026997) #32	DNAAF10 (ENSCAFG00020026999) #33
Dog	MODERN SPECIES	1	CCT4 (ENSCAFG00845016454) #8	COMMD1 (ENSCAFG00845016604) #9	B3GNT2 (ENSCAFG00845016685) #10	TMEM17 (ENSCAFG00845016745) #12	EHBP1 (ENSCAFG00845017216) #13	OTX1 (ENSCAFG00845018084) #14	WDPCP (ENSCAFG00845018266) #16	ENSCAFG00845018841	ENSCAFG00845018885	MDH1 (ENSCAFG00845019026) #17	UGP2 (ENSCAFG00845019476) #18	VPS54 (ENSCAFG00845019815) #19	PELI1 (ENSCAFG00845020350) #20	LGALSL (ENSCAFG00845020462) #21	ENSCAFG00845020543	AFTPH (ENSCAFG00845020600) #22	SLC1A4 (ENSCAFG00845020925) #24	CEP68 (ENSCAFG00845021026) #25	RAB1A (ENSCAFG00845021139) #26	ENSCAFG00845021343	ENSCAFG00845021409	ACTR2 (ENSCAFG00845021843) #27	SPRED2 (ENSCAFG00845022023) #28	ENSCAFG00845022112	MEIS1 (ENSCAFG00845022164) #30	ENSCAFG00845022346	ETAA1 (ENSCAFG00845022577) #31	ENSCAFG00845022735	WDR92 (ENSCAFG00845022766) #32	WDR92 (ENSCAFG00845022818) #33	PNO1 (ENSCAFG00845022894) #34
Red fox	MODERN SPECIES	10	B3GNT2 (ENSVVUG00000012079) #10	TMEM17 (ENSVVUG00000012092) #12	EHBP1 (ENSVVUG00000012144) #13	OTX1 (ENSVVUG00000012226) #14	ENSVVUG00000012230	ENSVVUG00000012232	WDPCP (ENSVVUG00000012239) #16	ENSVVUG00000012256	ENSVVUG00000012263	MDH1 (ENSVVUG00000012288) #17	UGP2 (ENSVVUG00000012309) #18	VPS54 (ENSVVUG00000012313) #19	PELI1 (ENSVVUG00000012332) #20	ENSVVUG00000012340	LGALSL (ENSVVUG00000012353) #21	AFTPH (ENSVVUG00000012375) #22
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000166485.b	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000016292.i.a.f	ENSGT00390000015405.o.a #32	ENSGT00950000183091.A.b #33
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000166485.b	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337.f #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000016292.i.a.f	ENSGT00390000015405.o.a #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000166485.b	ENSGT00940000157824 #7	ENSGT01000000221758	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337.f #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000164277	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00390000004856.w.a.a.b.b.a.b.b.a	ENSGT00950000183164.E.c.b.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000016292.i.a.f	ENSGT00390000015405.o.a #32	ENSGT00950000183091.A.b #33
leopard	MODERN SPECIES		ENSPPRG00000024662	FAM161A (ENSPPRG00000024716) #7	CCT4 (ENSPPRG00000024738) #8	COMMD1 (ENSPPRG00000024784) #9	B3GNT2 (ENSPPRG00000020752) #10	ENSPPRG00000024813	TMEM17 (ENSPPRG00000024820) #12	EHBP1 (ENSPPRG00000024840) #13	OTX1 (ENSPPRG00000024867) #14	WDPCP (ENSPPRG00000024890) #16	ENSPPRG00000024948 #17	UGP2 (ENSPPRG00000024974) #18	VPS54 (ENSPPRG00000025012) #19	PELI1 (ENSPPRG00000025026) #20	ENSPPRG00000025036 #21	AFTPH (ENSPPRG00000025039) #22	ENSPPRG00000025068	SERTAD2 (ENSPPRG00000020703) #23	SLC1A4 (ENSPPRG00000025070) #24	CEP68 (ENSPPRG00000025073) #25	RAB1A (ENSPPRG00000025077) #26	ENSPPRG00000021550	ACTR2 (ENSPPRG00000020870) #27	SPRED2 (ENSPPRG00000020675) #28	ENSPPRG00000020632	ENSPPRG00000020658	MEIS1 (ENSPPRG00000018537) #30	ETAA1 (ENSPPRG00000017171) #31	ENSPPRG00000020640	ENSPPRG00000017045 #32	DNAAF10 (ENSPPRG00000015515) #33
lion	MODERN SPECIES	3	ENSPLOG00000000799 #7	ENSPLOG00000000788	CCT4 (ENSPLOG00000000744) #8	ENSPLOG00000000693	COMMD1 (ENSPLOG00000000685) #9	B3GNT2 (ENSPLOG00000000672) #10	TMEM17 (ENSPLOG00000000647) #12	EHBP1 (ENSPLOG00000000545) #13	OTX1 (ENSPLOG00000000484) #14	WDPCP (ENSPLOG00000000468) #16	MDH1 (ENSPLOG00000000419) #17	UGP2 (ENSPLOG00000000363) #18	VPS54 (ENSPLOG00000000305) #19	PELI1 (ENSPLOG00000000230) #20	LGALSL (ENSPLOG00000000160) #21	AFTPH (ENSPLOG00000000129) #22	SERTAD2 (ENSPLOG00000000111) #23	SLC1A4 (ENSPLOG00000015581) #24	CEP68 (ENSPLOG00000015547) #25	RAB1A (ENSPLOG00000015420) #26	ENSPLOG00000015344	ACTR2 (ENSPLOG00000015113) #27	SPRED2 (ENSPLOG00000015039) #28	ENSPLOG00000015010	MEIS1 (ENSPLOG00000014760) #30	ETAA1 (ENSPLOG00000014630) #31	ENSPLOG00000014602	C1D (ENSPLOG00000014545) #32	DNAAF10 (ENSPLOG00000014401) #33	PNO1 (ENSPLOG00000014368) #34	ENSPLOG00000014345
Tiger	MODERN SPECIES	56	XPO1 (ENSPTIG00000012259)	FAM161A (ENSPTIG00000011182) #7	CCT4 (ENSPTIG00000009450) #8	COMMD1 (ENSPTIG00000008560) #9	B3GNT2 (ENSPTIG00000006426) #10	TMEM17 (ENSPTIG00000007396) #12	EHBP1 (ENSPTIG00000005411) #13	OTX1 (ENSPTIG00000021186) #14	WDPCP (ENSPTIG00000018461) #16	MDH1 (ENSPTIG00000015287) #17	UGP2 (ENSPTIG00000012159) #18	VPS54 (ENSPTIG00000007451) #19	PELI1 (ENSPTIG00000005767) #20	ENSPTIG00000003080 #21	ENSPTIG00000000654	AFTPH (ENSPTIG00000016879) #22	SERTAD2 (ENSPTIG00000006044) #23	ENSPTIG00000016054 #24	CEP68 (ENSPTIG00000014965) #25	RAB1A (ENSPTIG00000013471) #26	ACTR2 (ENSPTIG00000011973) #27	SPRED2 (ENSPTIG00000010714) #28	ENSPTIG00000010083	MEIS1 (ENSPTIG00000008411) #30
Cat	MODERN SPECIES	2	XPO1 (ENSFCAG00000002702)	ENSFCAG00000049089	FAM161A (ENSFCAG00000011118) #7	CCT4 (ENSFCAG00000024322) #8	COMMD1 (ENSFCAG00000027737) #9	B3GNT2 (ENSFCAG00000009061) #10	TMEM17 (ENSFCAG00000046240) #12	EHBP1 (ENSFCAG00000026831) #13	OTX1 (ENSFCAG00000044742) #14	WDPCP (ENSFCAG00000006657) #16	MDH1 (ENSFCAG00000024183) #17	UGP2 (ENSFCAG00000018580) #18	VPS54 (ENSFCAG00000008259) #19	PELI1 (ENSFCAG00000030163) #20	ENSFCAG00000045546 #21	AFTPH (ENSFCAG00000028719) #22	SERTAD2 (ENSFCAG00000002492) #23	SLC1A4 (ENSFCAG00000001506) #24	CEP68 (ENSFCAG00000030849) #25	RAB1A (ENSFCAG00000002536) #26	ENSFCAG00000014868	ACTR2 (ENSFCAG00000004960) #27	ENSFCAG00000051060	SPRED2 (ENSFCAG00000004962) #28	ENSFCAG00000028286	ENSFCAG00000037094	MEIS1 (ENSFCAG00000036549) #30	ETAA1 (ENSFCAG00000026219) #31	ENSFCAG00000028962	C1D (ENSFCAG00000028933) #32	DNAAF10 (ENSFCAG00000027122) #33
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Equus	ANCESTRAL SPECIES	7	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Horse	MODERN SPECIES	6	FAM161A (ENSECAG00000024614) #7	CCT4 (ENSECAG00000016982) #8	ENSECAG00000060047	COMMD1 (ENSECAG00000016963) #9	B3GNT2 (ENSECAG00000016959) #10	ENSECAG00000032544	TMEM17 (ENSECAG00000015697) #12	EHBP1 (ENSECAG00000009318) #13	OTX1 (ENSECAG00000024462) #14	MDH1 (ENSECAG00000010849) #17	WDPCP (ENSECAG00000019956) #16	UGP2 (ENSECAG00000016705) #18	VPS54 (ENSECAG00000022920) #19	PELI1 (ENSECAG00000021804) #20	LGALSL (ENSECAG00000018099) #21	AFTPH (ENSECAG00000012175) #22	SERTAD2 (ENSECAG00000040555) #23	SLC1A4 (ENSECAG00000011229) #24	CEP68 (ENSECAG00000009985) #25	RAB1A (ENSECAG00000009926) #26	ACTR2 (ENSECAG00000009219) #27	SPRED2 (ENSECAG00000005881) #28	MEIS1 (ENSECAG00000009387) #30	ETAA1 (ENSECAG00000006358) #31	C1D (ENSECAG00000002187) #32	ENSECAG00000057082	PNO1 (ENSECAG00000011263) #34	PPP3R1 (ENSECAG00000009627) #35	PLEK (ENSECAG00000018996) #37	FBXO48 (ENSECAG00000018966)	APLF (ENSECAG00000013246)
Donkey	MODERN SPECIES	26	FAM161A (ENSEASG00005007228) #7	CCT4 (ENSEASG00005007230) #8	COMMD1 (ENSEASG00005007231) #9	ENSEASG00005007233	ENSEASG00005007234	B3GNT2 (ENSEASG00005032411) #10	TMEM17 (ENSEASG00005031233) #12	EHBP1 (ENSEASG00005007241) #13	OTX1 (ENSEASG00005007243) #14	WDPCP (ENSEASG00005007245) #16	MDH1 (ENSEASG00005007262) #17	UGP2 (ENSEASG00005007264) #18	VPS54 (ENSEASG00005007268) #19	PELI1 (ENSEASG00005007279) #20	LGALSL (ENSEASG00005007283) #21	AFTPH (ENSEASG00005007290) #22	SERTAD2 (ENSEASG00005026993) #23	ENSEASG00005035148	SLC1A4 (ENSEASG00005007296) #24	CEP68 (ENSEASG00005007297) #25	RAB1A (ENSEASG00005034669) #26	ACTR2 (ENSEASG00005007299) #27	SPRED2 (ENSEASG00005027956) #28	MEIS1 (ENSEASG00005007304) #30	ETAA1 (ENSEASG00005007305) #31	C1D (ENSEASG00005033257) #32	DNAAF10 (ENSEASG00005007308) #33	PNO1 (ENSEASG00005007309) #34	ENSEASG00005007310 #35	CNRIP1 (ENSEASG00005030124) #36	PLEK (ENSEASG00005007312) #37
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Megabat	MODERN SPECIES	187																AFTPH (ENSPVAG00000003748) #22
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Greater horseshoe bat	MODERN SPECIES	4	ENSRFEG00010009347 #8	COMMD1 (ENSRFEG00010009299) #9	B3GNT2 (ENSRFEG00010009289) #10	ENSRFEG00010009258	ENSRFEG00010009225	ENSRFEG00010009180	TMEM17 (ENSRFEG00010009150) #12	EHBP1 (ENSRFEG00010008993) #13	OTX1 (ENSRFEG00010008915) #14	WDPCP (ENSRFEG00010008801) #16	MDH1 (ENSRFEG00010008617) #17	UGP2 (ENSRFEG00010008438) #18	VPS54 (ENSRFEG00010008048) #19	PELI1 (ENSRFEG00010008007) #20	LGALSL (ENSRFEG00010007948) #21	AFTPH (ENSRFEG00010007890) #22	SERTAD2 (ENSRFEG00010007864) #23	SLC1A4 (ENSRFEG00010007793) #24	CEP68 (ENSRFEG00010007746) #25	RAB1A (ENSRFEG00010007659) #26	ENSRFEG00010007617	ACTR2 (ENSRFEG00010007536) #27	SPRED2 (ENSRFEG00010007454) #28	ENSRFEG00010007383	MEIS1 (ENSRFEG00010007165) #30	ETAA1 (ENSRFEG00010007107) #31	ENSRFEG00010007018 #32	DNAAF10 (ENSRFEG00010006949) #33	PNO1 (ENSRFEG00010006896) #34	PPP3R1 (ENSRFEG00010006792) #35	CNRIP1 (ENSRFEG00010006735) #36
Microbat	MODERN SPECIES	943	XPO1 (ENSMLUG00000010670)	FAM161A (ENSMLUG00000030514) #7	CCT4 (ENSMLUG00000016138) #8	ENSMLUG00000022697 #9	B3GNT2 (ENSMLUG00000009924) #10	ENSMLUG00000027762	EHBP1 (ENSMLUG00000002314) #13	OTX1 (ENSMLUG00000002330) #14	WDPCP (ENSMLUG00000002336) #16	MDH1 (ENSMLUG00000002352) #17	UGP2 (ENSMLUG00000003123) #18	VPS54 (ENSMLUG00000003130) #19	PELI1 (ENSMLUG00000003152) #20	ENSMLUG00000015944	LGALSL (ENSMLUG00000008001) #21	AFTPH (ENSMLUG00000008012) #22	SERTAD2 (ENSMLUG00000013854) #23	SLC1A4 (ENSMLUG00000002430) #24	CEP68 (ENSMLUG00000002435) #25	RAB1A (ENSMLUG00000009489) #26	ACTR2 (ENSMLUG00000005227) #27	SPRED2 (ENSMLUG00000005236) #28
Eulipotyphla	ANCESTRAL SPECIES	2092																ENSGT00940000154186.a #22	ENSGT00390000001858
Common shrew	MODERN SPECIES	1471																AFTPH (ENSSARG00000009802) #22	ENSSARG00000009840
Hedgehog	MODERN SPECIES	2071																AFTPH (ENSEEUG00000007081) #22	ENSEEUG00000007125
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Tree shrew	MODERN SPECIES	5228														ENSTBEG00000014937	LGALSL (ENSTBEG00000015086) #21	AFTPH (ENSTBEG00000015098) #22	ENSTBEG00000015246	SERTAD2 (ENSTBEG00000015308) #23
Glires	ANCESTRAL SPECIES	13	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824.c #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556.lb.a #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Rabbit	MODERN SPECIES	11	ENSOCUG00000000707 #7	CCT4 (ENSOCUG00000024386) #8	COMMD1 (ENSOCUG00000001093) #9	B3GNT2 (ENSOCUG00000017281) #10	TMEM17 (ENSOCUG00000010487) #12	ENSOCUG00000037865	EHBP1 (ENSOCUG00000013563) #13	OTX1 (ENSOCUG00000021773) #14	WDPCP (ENSOCUG00000006156) #16	MDH1 (ENSOCUG00000006166) #17	ENSOCUG00000002137 #18	VPS54 (ENSOCUG00000002143) #19	PELI1 (ENSOCUG00000027961) #20	ENSOCUG00000031191	LGALSL (ENSOCUG00000013957) #21	AFTPH (ENSOCUG00000006390) #22	SERTAD2 (ENSOCUG00000008192) #23	ENSOCUG00000010821 #24	CEP68 (ENSOCUG00000016996) #25	RAB1A (ENSOCUG00000017003) #26	ACTR2 (ENSOCUG00000004906) #27	SPRED2 (ENSOCUG00000004913) #28	ENSOCUG00000034052	MEIS1 (ENSOCUG00000001842) #30	ETAA1 (ENSOCUG00000001812) #31	ENSOCUG00000009771 #32	DNAAF10 (ENSOCUG00000006087) #33	ENSOCUG00000006100 #34	PPP3R1 (ENSOCUG00000027562) #35	CNRIP1 (ENSOCUG00000006109) #36	PLEK (ENSOCUG00000006113) #37
Pika	MODERN SPECIES	602																ENSOPRG00000013391 #22
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Muroidea	ANCESTRAL SPECIES	21	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Northern American deer mouse	MODERN SPECIES	1	ENSPEMG00000011408 #7	Cct4 (ENSPEMG00000014381) #8	Commd1 (ENSPEMG00000008857) #9	ENSPEMG00000013373	B3gnt2 (ENSPEMG00000030694) #10	ENSPEMG00000029232	Tmem17 (ENSPEMG00000012666) #12	Ehbp1 (ENSPEMG00000014061) #13	Otx1 (ENSPEMG00000027636) #14	Wdpcp (ENSPEMG00000016341) #16	Mdh1 (ENSPEMG00000007456) #17	Ugp2 (ENSPEMG00000010268) #18	Vps54 (ENSPEMG00000012405) #19	Peli1 (ENSPEMG00000030617) #20	ENSPEMG00000015267 #21	Aftph (ENSPEMG00000010156) #22	Sertad2 (ENSPEMG00000027852) #23	ENSPEMG00000016241	Slc1a4 (ENSPEMG00000018063) #24	Cep68 (ENSPEMG00000002161) #25	Rab1a (ENSPEMG00000009340) #26	ENSPEMG00000025517	Actr2 (ENSPEMG00000015727) #27	Spred2 (ENSPEMG00000029042) #28	ENSPEMG00000028236	ENSPEMG00000012914	Meis1 (ENSPEMG00000008113) #30	Etaa1 (ENSPEMG00000011918) #31	ENSPEMG00000026465 #32	Dnaaf10 (ENSPEMG00000022118) #33	Pno1 (ENSPEMG00000022989) #34
Prairie vole	MODERN SPECIES	92	ENSMOCG00000018790	ENSMOCG00000016877 #7	Cct4 (ENSMOCG00000011789) #8	Commd1 (ENSMOCG00000006391) #9	B3gnt2 (ENSMOCG00000000086) #10	Tmem17 (ENSMOCG00000015494) #12	Ehbp1 (ENSMOCG00000007287) #13	Otx1 (ENSMOCG00000014191) #14	Wdpcp (ENSMOCG00000003579) #16	Mdh1 (ENSMOCG00000015448) #17	Ugp2 (ENSMOCG00000009715) #18	Vps54 (ENSMOCG00000009563) #19	Peli1 (ENSMOCG00000016437) #20	Gm5065 (ENSMOCG00000014300) #21	ENSMOCG00000003932	Aftph (ENSMOCG00000015081) #22	Sertad2 (ENSMOCG00000002173) #23	Slc1a4 (ENSMOCG00000001173) #24	Cep68 (ENSMOCG00000003444) #25	Rab1a (ENSMOCG00000017022) #26	Actr2 (ENSMOCG00000008248) #27	Spred2 (ENSMOCG00000014005) #28	Meis1 (ENSMOCG00000016359) #30	Etaa1 (ENSMOCG00000018537) #31	C1d (ENSMOCG00000010860) #32	Dnaaf10 (ENSMOCG00000000313) #33	Pno1 (ENSMOCG00000017268) #34	Ppp3r1 (ENSMOCG00000012867) #35	Cnrip1 (ENSMOCG00000004432) #36	Plek (ENSMOCG00000018168) #37	Fbxo48 (ENSMOCG00000015915)
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Chinese hamster chok1gshd	MODERN SPECIES	121	ENSCGRG00001007132	Commd1 (ENSCGRG00001007842) #9	B3gnt2 (ENSCGRG00001005196) #10	ENSCGRG00001025059	Tmem17 (ENSCGRG00001024384) #12	Ehbp1 (ENSCGRG00001022633) #13	Otx1 (ENSCGRG00001017328) #14	Wdpcp (ENSCGRG00001012886) #16	ENSCGRG00001023990	Mdh1 (ENSCGRG00001021102) #17	UGP2 (ENSCGRG00001012845) #18	Vps54 (ENSCGRG00001009286) #19	Peli1 (ENSCGRG00001021958) #20	Gm5065 (ENSCGRG00001013868) #21	ENSCGRG00001009126	Aftph (ENSCGRG00001016162) #22	Sertad2 (ENSCGRG00001009657) #23	ENSCGRG00001005474	Slc1a4 (ENSCGRG00001017715) #24	Cep68 (ENSCGRG00001014327) #25	ENSCGRG00001012691 #26	ENSCGRG00001017243 #27	Spred2 (ENSCGRG00001015924) #28	Meis1 (ENSCGRG00001009447) #30	Etaa1 (ENSCGRG00001020354) #31	C1d (ENSCGRG00001023376) #32	ENSCGRG00001017610 #33	ENSCGRG00001007472 #34	Ppp3r1 (ENSCGRG00001020769) #35	Cnrip1 (ENSCGRG00001014944) #36	Plek (ENSCGRG00001023663) #37
Golden Hamster	MODERN SPECIES	639	Xpo1 (ENSMAUG00000006769)	ENSMAUG00000012775 #7	Cct4 (ENSMAUG00000000518) #8	Commd1 (ENSMAUG00000010569) #9	B3gnt2 (ENSMAUG00000002963) #10	Tmem17 (ENSMAUG00000003448) #12	Ehbp1 (ENSMAUG00000000935) #13	Otx1 (ENSMAUG00000019114) #14	Wdpcp (ENSMAUG00000011349) #16	ENSMAUG00000012018	Mdh1 (ENSMAUG00000018086) #17	ENSMAUG00000012689 #18	Vps54 (ENSMAUG00000010788) #19	Peli1 (ENSMAUG00000012937) #20	ENSMAUG00000015033 #21	Aftph (ENSMAUG00000016557) #22	Sertad2 (ENSMAUG00000004242) #23	Slc1a4 (ENSMAUG00000019775) #24	Cep68 (ENSMAUG00000014820) #25	Rab1a (ENSMAUG00000012156) #26	Actr2 (ENSMAUG00000008458) #27	Spred2 (ENSMAUG00000013657) #28	Meis1 (ENSMAUG00000001130) #30	Etaa1 (ENSMAUG00000010594) #31	C1d (ENSMAUG00000008974) #32	Dnaaf10 (ENSMAUG00000011603) #33	Pno1 (ENSMAUG00000014995) #34	Ppp3r1 (ENSMAUG00000014614) #35	Cnrip1 (ENSMAUG00000019592) #36	Plek (ENSMAUG00000011299) #37	Fbxo48 (ENSMAUG00000020533)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183152.A	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.s #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183152.A	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.s #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183152.A	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.s #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183152.A	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.s #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mouse	MODERN SPECIES	2	Xpo1 (ENSMUSG00000020290)	Fam161a (ENSMUSG00000049811) #7	Cct4 (ENSMUSG00000007739) #8	Commd1 (ENSMUSG00000051355) #9	Commd1b (ENSMUSG00000098650)	B3gnt2 (ENSMUSG00000051650) #10	Tmem17 (ENSMUSG00000049904) #12	Ehbp1 (ENSMUSG00000042302) #13	Otx1 (ENSMUSG00000005917) #14	Wdpcp (ENSMUSG00000020319) #16	Mdh1 (ENSMUSG00000020321) #17	Ugp2 (ENSMUSG00000001891) #18	Vps54 (ENSMUSG00000020128) #19	Peli1 (ENSMUSG00000020134) #20	Lgalsl (ENSMUSG00000042363) #21	Aftph (ENSMUSG00000049659) #22	Sertad2 (ENSMUSG00000049800) #23	Slc1a4 (ENSMUSG00000020142) #24	Cep68 (ENSMUSG00000044066) #25	Rab1a (ENSMUSG00000020149) #26	Actr2 (ENSMUSG00000020152) #27	Spred2 (ENSMUSG00000045671) #28	Meis1 (ENSMUSG00000020160) #30	Etaa1 (ENSMUSG00000016984) #31	C1d (ENSMUSG00000000581) #32	Pno1 (ENSMUSG00000020116) #34	Dnaaf10 (ENSMUSG00000078970) #33	Ppp3r1 (ENSMUSG00000033953) #35	Cnrip1 (ENSMUSG00000044629) #36	Plek (ENSMUSG00000020120) #37	Fbxo48 (ENSMUSG00000044966)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183152.A	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.s #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
spretus	MODERN SPECIES	2	Cct4 (MGP_SPRETEiJ_G0016977) #8	MGP_SPRETEiJ_G0016976	Commd1 (MGP_SPRETEiJ_G0016975) #9	MGP_SPRETEiJ_G0016974 #9	B3gnt2 (MGP_SPRETEiJ_G0016973) #10	MGP_SPRETEiJ_G0016972	Tmem17 (MGP_SPRETEiJ_G0016971) #12	Ehbp1 (MGP_SPRETEiJ_G0016970) #13	Otx1 (MGP_SPRETEiJ_G0016969) #14	Wdpcp (MGP_SPRETEiJ_G0016968) #16	Mdh1 (MGP_SPRETEiJ_G0016967) #17	Ugp2 (MGP_SPRETEiJ_G0016966) #18	Vps54 (MGP_SPRETEiJ_G0016965) #19	Peli1 (MGP_SPRETEiJ_G0016964) #20	Lgalsl (MGP_SPRETEiJ_G0016963) #21	Aftph (MGP_SPRETEiJ_G0016962) #22	Sertad2 (MGP_SPRETEiJ_G0016961) #23	Slc1a4 (MGP_SPRETEiJ_G0016960) #24	Cep68 (MGP_SPRETEiJ_G0016959) #25	Rab1a (MGP_SPRETEiJ_G0016958) #26	Actr2 (MGP_SPRETEiJ_G0016957) #27	Spred2 (MGP_SPRETEiJ_G0016956) #28	Asb12 (MGP_SPRETEiJ_G0016955)	Meis1 (MGP_SPRETEiJ_G0016954) #30	Etaa1 (MGP_SPRETEiJ_G0016953) #31	C1d (MGP_SPRETEiJ_G0016952) #32	Pno1 (MGP_SPRETEiJ_G0016951) #34	Dnaaf10 (MGP_SPRETEiJ_G0016950) #33	Ppp3r1 (MGP_SPRETEiJ_G0016949) #35	MGP_SPRETEiJ_G0016948 #36	Plek (MGP_SPRETEiJ_G0016947) #37
Steppe mouse	MODERN SPECIES	3178															ENSMSIG00000013501	Aftph (ENSMSIG00000013440) #22	Sertad2 (ENSMSIG00000013434) #23	ENSMSIG00000013417	Slc1a4 (ENSMSIG00000013384) #24	Cep68 (ENSMSIG00000013342) #25	Rab1a (ENSMSIG00000013288) #26	Actr2 (ENSMSIG00000013218) #27	Spred2 (ENSMSIG00000013142) #28	ENSMSIG00000013132	ENSMSIG00000013123	Meis1 (ENSMSIG00000012755) #30
Ryukyu mouse	MODERN SPECIES	2	Cct4 (MGP_CAROLIEiJ_G0016134) #8	MGP_CAROLIEiJ_G0016133	MGP_CAROLIEiJ_G0016132 #9	B3gnt2 (MGP_CAROLIEiJ_G0016131) #10	MGP_CAROLIEiJ_G0016130 #9	MGP_CAROLIEiJ_G0016129	Tmem17 (MGP_CAROLIEiJ_G0016128) #12	Ehbp1 (MGP_CAROLIEiJ_G0016127) #13	Otx1 (MGP_CAROLIEiJ_G0016126) #14	Wdpcp (MGP_CAROLIEiJ_G0016125) #16	Mdh1 (MGP_CAROLIEiJ_G0016124) #17	Ugp2 (MGP_CAROLIEiJ_G0016123) #18	Vps54 (MGP_CAROLIEiJ_G0016122) #19	Peli1 (MGP_CAROLIEiJ_G0016121) #20	Gm5065 (MGP_CAROLIEiJ_G0016120) #21	Aftph (MGP_CAROLIEiJ_G0016119) #22	Sertad2 (MGP_CAROLIEiJ_G0016118) #23	Slc1a4 (MGP_CAROLIEiJ_G0016117) #24	Cep68 (MGP_CAROLIEiJ_G0016116) #25	Rab1a (MGP_CAROLIEiJ_G0016115) #26	Actr2 (MGP_CAROLIEiJ_G0016114) #27	Spred2 (MGP_CAROLIEiJ_G0016113) #28	Meis1 (MGP_CAROLIEiJ_G0016112) #30	Etaa1 (MGP_CAROLIEiJ_G0016111) #31	C1d (MGP_CAROLIEiJ_G0016110) #32	Pno1 (MGP_CAROLIEiJ_G0016109) #34	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #33	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #35	Cnrip1 (MGP_CAROLIEiJ_G0016106) #36	Plek (MGP_CAROLIEiJ_G0016105) #37	Fbxo48 (MGP_CAROLIEiJ_G0016104)
Shrew mouse	MODERN SPECIES	4	Commd1 (MGP_PahariEiJ_G0016757) #9	MGP_PahariEiJ_G0016758 #9	MGP_PahariEiJ_G0016759	B3gnt2 (MGP_PahariEiJ_G0016760) #10	MGP_PahariEiJ_G0016761	Tmem17 (MGP_PahariEiJ_G0016762) #12	Ehbp1 (MGP_PahariEiJ_G0016763) #13	Otx1 (MGP_PahariEiJ_G0016764) #14	MGP_PahariEiJ_G0016765 #16	Mdh1 (MGP_PahariEiJ_G0016766) #17	Ugp2 (MGP_PahariEiJ_G0016767) #18	Vps54 (MGP_PahariEiJ_G0016768) #19	Peli1 (MGP_PahariEiJ_G0016769) #20	MGP_PahariEiJ_G0016770 #21	Lgalsl (MGP_PahariEiJ_G0016771) #21	Aftph (MGP_PahariEiJ_G0016772) #22	Sertad2 (MGP_PahariEiJ_G0016773) #23	Slc1a4 (MGP_PahariEiJ_G0016774) #24	Cep68 (MGP_PahariEiJ_G0016775) #25	Rab1a (MGP_PahariEiJ_G0016776) #26	Actr2 (MGP_PahariEiJ_G0016777) #27	Spred2 (MGP_PahariEiJ_G0016778) #28	Meis1 (MGP_PahariEiJ_G0016779) #30	Etaa1 (MGP_PahariEiJ_G0016780) #31	C1d (MGP_PahariEiJ_G0016781) #32	Dnaaf10 (MGP_PahariEiJ_G0016782) #33	Pno1 (MGP_PahariEiJ_G0016783) #34	Ppp3r1 (MGP_PahariEiJ_G0016784) #35	MGP_PahariEiJ_G0016785 #36	Plek (MGP_PahariEiJ_G0016786) #37	Fbxo48 (MGP_PahariEiJ_G0016787)
Rat	MODERN SPECIES	5	B3gnt2 (ENSRNOG00000009267) #10	LOC100361636 (ENSRNOG00000033346)	AABR07016623.1 (ENSRNOG00000009240)	Tmem17 (ENSRNOG00000009220) #12	Ehbp1 (ENSRNOG00000008917) #13	Otx1 (ENSRNOG00000065081) #14	ENSRNOG00000065408	Wdpcp (ENSRNOG00000054331) #16	Mdh1 (ENSRNOG00000008103) #17	Ugp2 (ENSRNOG00000008079) #18	Vps54 (ENSRNOG00000007125) #19	Peli1 (ENSRNOG00000006329) #20	LOC108352809 (ENSRNOG00000042277)	Lgalsl (ENSRNOG00000005464) #21	LOC108352861 (ENSRNOG00000029052)	Aftph (ENSRNOG00000005411) #22	Sertad2 (ENSRNOG00000005393) #23	Slc1a4 (ENSRNOG00000005248) #24	Cep68 (ENSRNOG00000027282) #25	Rab1a (ENSRNOG00000004992) #26	Rpl38 (ENSRNOG00000033686)	ENSRNOG00000070133	AABR07016566.1 (ENSRNOG00000051648)	Actr2 (ENSRNOG00000004959) #27	Spred2 (ENSRNOG00000004888) #28	Meis1 (ENSRNOG00000004606) #30	Etaa1l1 (ENSRNOG00000006185) #31	Hnrnpk-ps1 (ENSRNOG00000063529)	C1d (ENSRNOG00000005982) #32	Pno1 (ENSRNOG00000005524) #34	Cnrip1 (ENSRNOG00000005326) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1542							Ehbp1 (ENSNGAG00000022543) #13	Otx1 (ENSNGAG00000023167) #14	Wdpcp (ENSNGAG00000022039) #16	ENSNGAG00000016412	Mdh1 (ENSNGAG00000022959) #17	Ugp2 (ENSNGAG00000014716) #18	Vps54 (ENSNGAG00000019724) #19	Peli1 (ENSNGAG00000014256) #20	ENSNGAG00000017298 #21	Aftph (ENSNGAG00000022259) #22	ENSNGAG00000010686	Sertad2 (ENSNGAG00000019290) #23	Slc1a4 (ENSNGAG00000022015) #24	Cep68 (ENSNGAG00000024137) #25	Rab1a (ENSNGAG00000005838) #26
Lesser Egyptian jerboa	MODERN SPECIES	74	Fam98a (ENSJJAG00000012732)	Rasgrp3 (ENSJJAG00000021552)	ENSJJAG00000003107 #8	Commd1 (ENSJJAG00000006007) #9	B3gnt2 (ENSJJAG00000007561) #10	Tmem17 (ENSJJAG00000007029) #12	Ehbp1 (ENSJJAG00000023917) #13	Otx1 (ENSJJAG00000011287) #14	ENSJJAG00000015148 #16	ENSJJAG00000014833 #16	Mdh1 (ENSJJAG00000024369) #17	Ugp2 (ENSJJAG00000014432) #18	Vps54 (ENSJJAG00000012401) #19	Peli1 (ENSJJAG00000000296) #20	Gm5065 (ENSJJAG00000016772) #21	ENSJJAG00000020384 #22	Sertad2 (ENSJJAG00000015989) #23	Slc1a4 (ENSJJAG00000002418) #24	Cep68 (ENSJJAG00000016421) #25	Rab1a (ENSJJAG00000014396) #26	Actr2 (ENSJJAG00000008642) #27	Spred2 (ENSJJAG00000020977) #28	Meis1 (ENSJJAG00000015459) #30	ENSJJAG00000011226 #31	ENSJJAG00000021064	ENSJJAG00000023186 #32	Dnaaf10 (ENSJJAG00000019935) #33	Pno1 (ENSJJAG00000022862) #34	Ppp3r1 (ENSJJAG00000016869) #35	Cnrip1 (ENSJJAG00000016204) #36	Plek (ENSJJAG00000005757) #37
Kangaroo rat	MODERN SPECIES	382	Commd1 (ENSDORG00000001166) #9	ENSDORG00000027292	B3gnt2 (ENSDORG00000024683) #10	Tmem17 (ENSDORG00000024954) #12	Ehbp1 (ENSDORG00000002628) #13	ENSDORG00000023858	Otx1 (ENSDORG00000024553) #14	Wdpcp (ENSDORG00000003329) #16	ENSDORG00000009021	Mdh1 (ENSDORG00000000099) #17	Rasl2-9 (ENSDORG00000027038)	Ugp2 (ENSDORG00000013164) #18	Vps54 (ENSDORG00000009782) #19	Peli1 (ENSDORG00000025404) #20	ENSDORG00000027919 #21	ENSDORG00000004159 #22	ENSDORG00000027058	Sertad2 (ENSDORG00000025954) #23	Slc1a4 (ENSDORG00000002394) #24	Cep68 (ENSDORG00000002111) #25	ENSDORG00000028628 #26	Actr2 (ENSDORG00000001487) #27	Spred2 (ENSDORG00000012174) #28	Meis1 (ENSDORG00000008334) #30	C1d (ENSDORG00000003300) #32	Dnaaf10 (ENSDORG00000006862) #33	ENSDORG00000006867 #34	Ppp3r1 (ENSDORG00000024931) #35	Cnrip1 (ENSDORG00000025749) #36	Plek (ENSDORG00000029923) #37	Fbxo48 (ENSDORG00000011239)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Marmotini	ANCESTRAL SPECIES	14	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000154431.e.a.f	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000006598	ENSMMMG00000006583 #7	CCT4 (ENSMMMG00000006543) #8	ENSMMMG00000006529 #9	B3GNT2 (ENSMMMG00000006495) #10	TMEM17 (ENSMMMG00000006473) #12	EHBP1 (ENSMMMG00000006363) #13	OTX1 (ENSMMMG00000006353) #14	WDPCP (ENSMMMG00000006330) #16	MDH1 (ENSMMMG00000006303) #17	ENSMMMG00000006286	UGP2 (ENSMMMG00000006263) #18	VPS54 (ENSMMMG00000006188) #19	PELI1 (ENSMMMG00000006175) #20	LGALSL (ENSMMMG00000006152) #21	AFTPH (ENSMMMG00000006097) #22	ENSMMMG00000006048	ENSMMMG00000006042	SLC1A4 (ENSMMMG00000006026) #24	CEP68 (ENSMMMG00000005980) #25	RAB1A (ENSMMMG00000005929) #26	ACTR2 (ENSMMMG00000005910) #27	ENSMMMG00000005906	SPRED2 (ENSMMMG00000005882) #28	ENSMMMG00000005873	ENSMMMG00000005870	MEIS1 (ENSMMMG00000005763) #30	ENSMMMG00000005757	ENSMMMG00000005754	ETAA1 (ENSMMMG00000005704) #31	C1D (ENSMMMG00000005685) #32
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00940000153408.B	ENSGT00940000154451.s	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029.m #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00960000190724	ENSGT00940000156841 #28	ENSGT00940000154431.e.a.f	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35
Squirrel	MODERN SPECIES	91	ENSSTOG00000028618	FAM161A (ENSSTOG00000026146) #7	CCT4 (ENSSTOG00000014911) #8	COMMD1 (ENSSTOG00000015062) #9	B3GNT2 (ENSSTOG00000015068) #10	TMEM17 (ENSSTOG00000009462) #12	EHBP1 (ENSSTOG00000020225) #13	OTX1 (ENSSTOG00000025219) #14	WDPCP (ENSSTOG00000014213) #16	MDH1 (ENSSTOG00000014227) #17	ENSSTOG00000023912	UGP2 (ENSSTOG00000000789) #18	VPS54 (ENSSTOG00000023517) #19	PELI1 (ENSSTOG00000026315) #20	LGALSL (ENSSTOG00000024204) #21	AFTPH (ENSSTOG00000020828) #22	ENSSTOG00000030042	SERTAD2 (ENSSTOG00000008454) #23	SLC1A4 (ENSSTOG00000025160) #24	CEP68 (ENSSTOG00000011479) #25	ENSSTOG00000020693 #26	ACTR2 (ENSSTOG00000012608) #27	SPRED2 (ENSSTOG00000022318) #28	ENSSTOG00000024155	MEIS1 (ENSSTOG00000009914) #30	ETAA1 (ENSSTOG00000027144) #31	C1D (ENSSTOG00000012346) #32	DNAAF10 (ENSSTOG00000024192) #33	PNO1 (ENSSTOG00000026989) #34	PPP3R1 (ENSSTOG00000025985) #35	CNRIP1 (ENSSTOG00000004875) #36
Arctic ground squirrel	MODERN SPECIES	47	XPO1 (ENSUPAG00010011307)	ENSUPAG00010011301	FAM161A (ENSUPAG00010011296) #7	CCT4 (ENSUPAG00010011275) #8	ENSUPAG00010011263 #9	B3GNT2 (ENSUPAG00010011255) #10	TMEM17 (ENSUPAG00010011243) #12	EHBP1 (ENSUPAG00010011097) #13	OTX1 (ENSUPAG00010011094) #14	WDPCP (ENSUPAG00010011061) #16	MDH1 (ENSUPAG00010011052) #17	UGP2 (ENSUPAG00010011000) #18	VPS54 (ENSUPAG00010010962) #19	PELI1 (ENSUPAG00010010945) #20	LGALSL (ENSUPAG00010010929) #21	AFTPH (ENSUPAG00010010843) #22	SERTAD2 (ENSUPAG00010010839) #23	ENSUPAG00010010837	SLC1A4 (ENSUPAG00010010829) #24	CEP68 (ENSUPAG00010010822) #25	RAB1A (ENSUPAG00010010773) #26	ACTR2 (ENSUPAG00010010750) #27	ENSUPAG00010010742	SPRED2 (ENSUPAG00010010724) #28	ENSUPAG00010010722	ENSUPAG00010010713	MEIS1 (ENSUPAG00010010695) #30	ENSUPAG00010010694	ETAA1 (ENSUPAG00010010688) #31	ENSUPAG00010010674 #32	DNAAF10 (ENSUPAG00010010668) #33
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	5	FAM161A (ENSSVLG00005023008) #7	CCT4 (ENSSVLG00005022942) #8	CRIPT (ENSSVLG00005022896)	ENSSVLG00005022859 #9	ENSSVLG00005022821	B3GNT2 (ENSSVLG00005022804) #10	TMEM17 (ENSSVLG00005022771) #12	EHBP1 (ENSSVLG00005022645) #13	OTX1 (ENSSVLG00005022587) #14	WDPCP (ENSSVLG00005022261) #16	MDH1 (ENSSVLG00005022103) #17	UGP2 (ENSSVLG00005021917) #18	VPS54 (ENSSVLG00005021631) #19	PELI1 (ENSSVLG00005021561) #20	LGALSL (ENSSVLG00005021478) #21	ENSSVLG00005021416 #22	SERTAD2 (ENSSVLG00005021387) #23	SLC1A4 (ENSSVLG00005021330) #24	ENSSVLG00005021277	ENSSVLG00005021243	ENSSVLG00005021194	TMSB10 (ENSSVLG00005021149)	ENSSVLG00005021102	DNAH6 (ENSSVLG00005019791)	SUCLG1 (ENSSVLG00005019152)	ENSSVLG00005019059	ENSSVLG00005019021	ENSSVLG00005018963 #29	LRRTM1 (ENSSVLG00005018942)	CTNNA2 (ENSSVLG00005018168)	ENSSVLG00005017931
Eurasian red squirrel	MODERN SPECIES	3	ODAD2 (ENSSVLG00005016451)	ENSSVLG00005016298	WAC (ENSSVLG00005015976)	ENSSVLG00005015928	ENSSVLG00005015917	BAMBI (ENSSVLG00005015877)	ENSSVLG00005015824	MAP3K8 (ENSSVLG00005015778)	MTPAP (ENSSVLG00005015727)	JCAD (ENSSVLG00005015699)	SVIL (ENSSVLG00005014605)	ZNF438 (ENSSVLG00005014347)	ZEB1 (ENSSVLG00005014010)	ENSSVLG00005013711	ARHGAP12 (ENSSVLG00005024026)	ENSSVLG00005023935 #22	ENSSVLG00005023922	ENSSVLG00005023874	KIF5B (ENSSVLG00005023823)	EPC1 (ENSSVLG00005023747)	ENSSVLG00005023715	ENSSVLG00005023536	ITGB1 (ENSSVLG00005023311)	NRP1 (ENSSVLG00005023267)	ENSSVLG00005023228	ENSSVLG00005023205	PARD3 (ENSSVLG00005022949)	CUL2 (ENSSVLG00005022796)	CREM (ENSSVLG00005021874)	ENSSVLG00005021688	ENSSVLG00005021670
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.f #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.f #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Guinea pig	MODERN SPECIES	48	XPO1 (ENSCPOG00000034053)	FAM161A (ENSCPOG00000002085) #7	CCT4 (ENSCPOG00000002086) #8	COMMD1 (ENSCPOG00000002088) #9	B3GNT2 (ENSCPOG00000034379) #10	TMEM17 (ENSCPOG00000035038) #12	EHBP1 (ENSCPOG00000002001) #13	OTX1 (ENSCPOG00000004881) #14	ENSCPOG00000030520 #16	ENSCPOG00000036317 #16	MDH1 (ENSCPOG00000010755) #17	UGP2 (ENSCPOG00000008459) #18	VPS54 (ENSCPOG00000037738) #19	PELI1 (ENSCPOG00000037199) #20	LGALSL (ENSCPOG00000039657) #21	ENSCPOG00000033401 #22	SLC1A4 (ENSCPOG00000008754) #24	CEP68 (ENSCPOG00000001592) #25	RAB1A (ENSCPOG00000015437) #26	ACTR2 (ENSCPOG00000025808) #27	SPRED2 (ENSCPOG00000037272) #28
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.f #25	ENSGT00940000154958.y #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Long-tailed chinchilla	MODERN SPECIES	131	XPO1 (ENSCLAG00000012953)	FAM161A (ENSCLAG00000011652) #7	CCT4 (ENSCLAG00000014321) #8	COMMD1 (ENSCLAG00000013262) #9	B3GNT2 (ENSCLAG00000013147) #10	TMEM17 (ENSCLAG00000013487) #12	EHBP1 (ENSCLAG00000007561) #13	OTX1 (ENSCLAG00000010265) #14	ENSCLAG00000008400 #16	MDH1 (ENSCLAG00000007815) #17	UGP2 (ENSCLAG00000010416) #18	VPS54 (ENSCLAG00000007366) #19	PELI1 (ENSCLAG00000006481) #20	LGALSL (ENSCLAG00000015114) #21	ENSCLAG00000012344	AFTPH (ENSCLAG00000012032) #22	SERTAD2 (ENSCLAG00000008318) #23	SLC1A4 (ENSCLAG00000008207) #24	CEP68 (ENSCLAG00000012193) #25	RAB1A (ENSCLAG00000014766) #26	ACTR2 (ENSCLAG00000010920) #27	SPRED2 (ENSCLAG00000011449) #28	MEIS1 (ENSCLAG00000010420) #30	ETAA1 (ENSCLAG00000013575) #31	C1D (ENSCLAG00000011883) #32	DNAAF10 (ENSCLAG00000014702) #33	PNO1 (ENSCLAG00000015058) #34	PPP3R1 (ENSCLAG00000012159) #35	CNRIP1 (ENSCLAG00000012035) #36	PLEK (ENSCLAG00000010835) #37	FBXO48 (ENSCLAG00000010201)
Degu	MODERN SPECIES	119	B3GNT2 (ENSODEG00000011165) #10	ENSODEG00000011529 #12	EHBP1 (ENSODEG00000012259) #13	OTX1 (ENSODEG00000012071) #14	ENSODEG00000011160	ENSODEG00000011103	ENSODEG00000019821	WDPCP (ENSODEG00000011330) #16	MDH1 (ENSODEG00000011582) #17	ENSODEG00000012736	ENSODEG00000011552 #18	VPS54 (ENSODEG00000012541) #19	PELI1 (ENSODEG00000011189) #20	ENSODEG00000011901	LGALSL (ENSODEG00000011485) #21	ENSODEG00000011805 #22	SERTAD2 (ENSODEG00000011523) #23	SLC1A4 (ENSODEG00000011406) #24	ENSODEG00000011248 #26	ENSODEG00000010956 #27	SPRED2 (ENSODEG00000012243) #28	ENSODEG00000012312	MEIS1 (ENSODEG00000012314) #30	ENSODEG00000011242 #32	ENSODEG00000019812	ENSODEG00000011043 #33	PNO1 (ENSODEG00000011769) #34	PPP3R1 (ENSODEG00000012397) #35	CNRIP1 (ENSODEG00000011175) #36	PLEK (ENSODEG00000011044) #37	FBXO48 (ENSODEG00000011400)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000046505	ENSHGLG00000035774 #9	ENSHGLG00000008287 #10	TMEM17 (ENSHGLG00000007663) #12	EHBP1 (ENSHGLG00000007334) #13	OTX1 (ENSHGLG00000007005) #14	ENSHGLG00000039651	WDPCP (ENSHGLG00000005902) #16	ENSHGLG00000034790	MDH1 (ENSHGLG00000033109) #17	UGP2 (ENSHGLG00000005211) #18	VPS54 (ENSHGLG00000004813) #19	ENSHGLG00000033380	PELI1 (ENSHGLG00000033688) #20	ENSHGLG00000035846 #21	ENSHGLG00000004286 #22	ENSHGLG00000004348	ENSHGLG00000047996 #23	ENSHGLG00000049432	SLC1A4 (ENSHGLG00000036619) #24	ENSHGLG00000048375 #25	CEP68 (ENSHGLG00000018361) #25	RAB1A (ENSHGLG00000045077) #26	ENSHGLG00000037092	ENSHGLG00000042711 #28	ENSHGLG00000034618	ENSHGLG00000041829	ENSHGLG00000013407	MEIS1 (ENSHGLG00000012586) #30	ENSHGLG00000020742	ETAA1 (ENSHGLG00000040625) #31
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000014716	ENSHGLG00000014451	ENSHGLG00000014349	ENSHGLG00000048724	ENSHGLG00000036112	ENSHGLG00000013450	ENSHGLG00000000663	ENSHGLG00000013672	ENSHGLG00000020760	ENSHGLG00000038492	KPNA4 (ENSHGLG00000012364)	ENSHGLG00000012199	TRIM59 (ENSHGLG00000046594)	SMC4 (ENSHGLG00000011736)	IFT80 (ENSHGLG00000011237)	ENSHGLG00000038484 #22	ENSHGLG00000036824	C3orf80 (ENSHGLG00000032252)	ENSHGLG00000044386	IL12A (ENSHGLG00000014587)	ENSHGLG00000014551	ENSHGLG00000021053	MFSD1 (ENSHGLG00000016907)	RARRES1 (ENSHGLG00000049842)	GFM1 (ENSHGLG00000016855)	LXN (ENSHGLG00000033224)	ENSHGLG00000000559	MLF1 (ENSHGLG00000016829)	RSRC1 (ENSHGLG00000018148)	ENSHGLG00000039235	ENSHGLG00000044928
Naked mole-rat female	MODERN SPECIES	20	CHST8 (ENSHGLG00000008720)	KCTD15 (ENSHGLG00000034885)	ENSHGLG00000042419	ENSHGLG00000007321	GARRE1 (ENSHGLG00000013898)	Gpi (ENSHGLG00000015058)	PDCD2L (ENSHGLG00000019039)	UBA2 (ENSHGLG00000013209)	WTIP (ENSHGLG00000044055)	ENSHGLG00000013473	ENSHGLG00000037952	ENSHGLG00000041394	ENSHGLG00000044339	ENSHGLG00000009826	ZNF599 (ENSHGLG00000047822)	ENSHGLG00000013668 #22	ENSHGLG00000006199	ENSHGLG00000041073	ENSHGLG00000010197	ENSHGLG00000009065	GRAMD1A (ENSHGLG00000015255)	SCN1B (ENSHGLG00000018069)	HPN (ENSHGLG00000014368)	ENSHGLG00000015814	LGI4 (ENSHGLG00000018052)	FXYD1 (ENSHGLG00000015284)	ENSHGLG00000040719	LSR (ENSHGLG00000006626)	FAM187B (ENSHGLG00000034675)	ENSHGLG00000045924	USF2 (ENSHGLG00000011485)
Primates	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00390000003682.ib.a	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Tarsier	MODERN SPECIES	2819												VPS54 (ENSTSYG00000014249) #19	PELI1 (ENSTSYG00000026162) #20	LGALSL (ENSTSYG00000037311) #21	ENSTSYG00000029365	AFTPH (ENSTSYG00000013185) #22
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00390000003682.ib.a.a.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029.h #9	ENSGT00940000155345.m #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h.a.b #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a.a.a #20	ENSGT00950000183050.b.b.a.a.b #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.t #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.c #34	ENSGT00940000156530.c #35
Cebidae	ANCESTRAL SPECIES	15	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029.h #9	ENSGT00940000155345.m #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h.a.b #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a.a.b #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.t #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.c #34	ENSGT00940000156530.c #35
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00900000141074.e.b.a	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029.h #9	ENSGT00940000155345.m #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h.a.b.b #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a.a.b #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154277.a.b.a.b	ENSGT00940000154556 #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00390000003682.ib.a.a.b.a	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.t #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.c #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Capuchin	MODERN SPECIES	23	FAM161A (ENSCCAG00000032868) #7	CCT4 (ENSCCAG00000036910) #8	ENSCCAG00000014874	COMMD1 (ENSCCAG00000021063) #9	B3GNT2 (ENSCCAG00000004376) #10	TMEM17 (ENSCCAG00000033287) #12	EHBP1 (ENSCCAG00000022934) #13	OTX1 (ENSCCAG00000037783) #14	WDPCP (ENSCCAG00000026603) #16	ENSCCAG00000032985 #17	UGP2 (ENSCCAG00000038081) #18	VPS54 (ENSCCAG00000037148) #19	ENSCCAG00000033895 #20	LGALSL (ENSCCAG00000035879) #21	ENSCCAG00000030319	AFTPH (ENSCCAG00000022631) #22	ENSCCAG00000032655	SLC1A4 (ENSCCAG00000022825) #24	ENSCCAG00000037790	CEP68 (ENSCCAG00000022595) #25	RAB1A (ENSCCAG00000021869) #26	ENSCCAG00000038117	ENSCCAG00000021773	ACTR2 (ENSCCAG00000030047) #27	SPRED2 (ENSCCAG00000035702) #28	MEIS1 (ENSCCAG00000020640) #30	ENSCCAG00000023051	ETAA1 (ENSCCAG00000027189) #31	ENSCCAG00000030405 #32	DNAAF10 (ENSCCAG00000018459) #33	ENSCCAG00000030366 #34
Bolivian squirrel monkey	MODERN SPECIES	48	ENSSBOG00000010136	FAM161A (ENSSBOG00000034089) #7	CCT4 (ENSSBOG00000026025) #8	COMMD1 (ENSSBOG00000032499) #9	ENSSBOG00000019927 #10	TMEM17 (ENSSBOG00000026954) #12	EHBP1 (ENSSBOG00000027993) #13	OTX1 (ENSSBOG00000030274) #14	WDPCP (ENSSBOG00000020988) #16	ENSSBOG00000035941 #17	UGP2 (ENSSBOG00000035973) #18	VPS54 (ENSSBOG00000034598) #19	PELI1 (ENSSBOG00000001340) #20	LGALSL (ENSSBOG00000029775) #21	ENSSBOG00000019039	AFTPH (ENSSBOG00000027803) #22	SLC1A4 (ENSSBOG00000023405) #24	CEP68 (ENSSBOG00000033296) #25	RAB1A (ENSSBOG00000023732) #26	ENSSBOG00000031295	ENSSBOG00000018757	ENSSBOG00000024339	ACTR2 (ENSSBOG00000028028) #27	SPRED2 (ENSSBOG00000000156) #28	ENSSBOG00000018908	MEIS1 (ENSSBOG00000000062) #30	ETAA1 (ENSSBOG00000020086) #31	ENSSBOG00000025275 #32	DNAAF10 (ENSSBOG00000035020) #33	ENSSBOG00000026710 #34	PPP3R1 (ENSSBOG00000021442) #35
Marmoset	MODERN SPECIES	5	COMMD1 (ENSCJAG00000008693) #9	B3GNT2 (ENSCJAG00000046682) #10	TMEM17 (ENSCJAG00000045778) #12	ENSCJAG00000077815	EHBP1 (ENSCJAG00000008586) #13	OTX1 (ENSCJAG00000083222) #14	ENSCJAG00000075756	WDPCP (ENSCJAG00000007061) #16	ENSCJAG00000007018 #17	UGP2 (ENSCJAG00000006960) #18	VPS54 (ENSCJAG00000006914) #19	PELI1 (ENSCJAG00000006889) #20	ENSCJAG00000070703	ENSCJAG00000006878 #21	ENSCJAG00000046867	AFTPH (ENSCJAG00000006819) #22	SERTAD2 (ENSCJAG00000006818) #23	ENSCJAG00000074553	ENSCJAG00000074052	SLC1A4 (ENSCJAG00000006795) #24	CEP68 (ENSCJAG00000006788) #25	ENSCJAG00000072263	ENSCJAG00000074307	ENSCJAG00000046275 #26	ACTR2 (ENSCJAG00000006722) #27	SPRED2 (ENSCJAG00000006693) #28	ENSCJAG00000080598	ENSCJAG00000079193	ENSCJAG00000067866	ENSCJAG00000073899	MEIS1 (ENSCJAG00000006613) #30
Mas night monkey	MODERN SPECIES	655	ENSANAG00000036898	ENSANAG00000019382 #10	ENSANAG00000024280	TMEM17 (ENSANAG00000023395) #12	EHBP1 (ENSANAG00000022884) #13	OTX1 (ENSANAG00000032160) #14	WDPCP (ENSANAG00000033928) #16	ENSANAG00000029892	ENSANAG00000038114 #17	ENSANAG00000019559	UGP2 (ENSANAG00000035096) #18	VPS54 (ENSANAG00000021718) #19	ENSANAG00000029544 #20	ENSANAG00000026716	LGALSL (ENSANAG00000035714) #21	AFTPH (ENSANAG00000033138) #22	ENSANAG00000025925	SLC1A4 (ENSANAG00000034703) #24	CEP68 (ENSANAG00000035796) #25	RAB1A (ENSANAG00000020929) #26	ENSANAG00000038454	ACTR2 (ENSANAG00000038066) #27	ENSANAG00000020597	SPRED2 (ENSANAG00000024110) #28
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Hominidae	ANCESTRAL SPECIES	19	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183099.u.a.d.b.c.a.b.b	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00950000183099.u.a.d.b.c.a.b.b	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a.a.a #27	ENSGT00910000147214	ENSGT00940000154556.tb.a.b #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s.a #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35
Gorilla	MODERN SPECIES	14	COMMD1 (ENSGGOG00000007602) #9	RPSA (ENSGGOG00000026707)	B3GNT2 (ENSGGOG00000025266) #10	ENSGGOG00000038261	EHBP1 (ENSGGOG00000034917) #13	OTX1 (ENSGGOG00000015410) #14	WDPCP (ENSGGOG00000011930) #16	MDH1 (ENSGGOG00000007085) #17	ENSGGOG00000036456	UGP2 (ENSGGOG00000006283) #18	VPS54 (ENSGGOG00000006294) #19	PELI1 (ENSGGOG00000013460) #20	ENSGGOG00000022216	LGALSL (ENSGGOG00000006386) #21	ENSGGOG00000023155	AFTPH (ENSGGOG00000008449) #22	SLC1A4 (ENSGGOG00000011211) #24	CEP68 (ENSGGOG00000005826) #25	RAB1A (ENSGGOG00000026603) #26	ENSGGOG00000008505 #27	ENSGGOG00000041600	SPRED2 (ENSGGOG00000007267) #28	ENSGGOG00000005446 #30	ETAA1 (ENSGGOG00000014411) #31	ENSGGOG00000025982 #32	ENSGGOG00000023297	DNAAF10 (ENSGGOG00000010285) #33	PNO1 (ENSGGOG00000009158) #34	PPP3R1 (ENSGGOG00000039766) #35	CNRIP1 (ENSGGOG00000022874) #36	ENSGGOG00000005831 #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a.a.a #27	ENSGT00910000147214	ENSGT00940000154556.tb.a.b #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s.a #32	ENSGT00950000183091.A.b #33	ENSGT00390000004284 #36	ENSGT00940000157885.k #37
Human	MODERN SPECIES	11	USP34 (ENSG00000115464)	XPO1 (ENSG00000082898)	FAM161A (ENSG00000170264) #7	CCT4 (ENSG00000115484) #8	COMMD1 (ENSG00000173163) #9	B3GNT2 (ENSG00000170340) #10	TMEM17 (ENSG00000186889) #12	EHBP1 (ENSG00000115504) #13	OTX1 (ENSG00000115507) #14	WDPCP (ENSG00000143951) #16	MDH1 (ENSG00000014641) #17	UGP2 (ENSG00000169764) #18	VPS54 (ENSG00000143952) #19	PELI1 (ENSG00000197329) #20	LGALSL (ENSG00000119862) #21	AFTPH (ENSG00000119844) #22	SERTAD2 (ENSG00000179833) #23	SLC1A4 (ENSG00000115902) #24	CEP68 (ENSG00000011523) #25	RAB1A (ENSG00000138069) #26	ACTR2 (ENSG00000138071) #27	SPRED2 (ENSG00000198369) #28	MEIS1 (ENSG00000143995) #30	ETAA1 (ENSG00000143971) #31	C1D (ENSG00000197223) #32	DNAAF10 (ENSG00000243667) #33	PNO1 (ENSG00000115946) #34	PPP3R1 (ENSG00000221823) #35	CNRIP1 (ENSG00000119865) #36	PLEK (ENSG00000115956) #37	FBXO48 (ENSG00000204923)
Pan	ANCESTRAL SPECIES	17	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00390000010721.a.a.a.b	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a.a.a #27	ENSGT00910000147214	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s.a #32	ENSGT00390000015405.s.b #32	ENSGT00390000018052.l #34	ENSGT00950000183091.A.b #33	ENSGT00390000004284 #36
Chimpanzee	MODERN SPECIES	14	CCT4 (ENSPTRG00000011965) #8	COMMD1 (ENSPTRG00000011966) #9	ENSPTRG00000045695	B3GNT2 (ENSPTRG00000051560) #10	TMEM17 (ENSPTRG00000011968) #12	EHBP1 (ENSPTRG00000011969) #13	OTX1 (ENSPTRG00000011972) #14	WDPCP (ENSPTRG00000024270) #16	MDH1 (ENSPTRG00000011974) #17	ENSPTRG00000046466	ENSPTRG00000048626	UGP2 (ENSPTRG00000011976) #18	VPS54 (ENSPTRG00000011978) #19	PELI1 (ENSPTRG00000023869) #20	LGALSL (ENSPTRG00000047293) #21	AFTPH (ENSPTRG00000011983) #22	ENSPTRG00000045952	SERTAD2 (ENSPTRG00000030469) #23	SLC1A4 (ENSPTRG00000011985) #24	CEP68 (ENSPTRG00000011988) #25	RAB1A (ENSPTRG00000011989) #26	ENSPTRG00000011990 #27	ENSPTRG00000047998	SPRED2 (ENSPTRG00000011992) #28	MEIS1 (ENSPTRG00000011994) #30	ETAA1 (ENSPTRG00000011996) #31	C1D (ENSPTRG00000023558) #32	ENSPTRG00000041941 #33	PNO1 (ENSPTRG00000011999) #34	CNRIP1 (ENSPTRG00000012002) #36	PLEK (ENSPTRG00000012003) #37
Bonobo	MODERN SPECIES	14	XPO1 (ENSPPAG00000029699)	FAM161A (ENSPPAG00000037442) #7	CCT4 (ENSPPAG00000036821) #8	COMMD1 (ENSPPAG00000043574) #9	B3GNT2 (ENSPPAG00000024510) #10	TMEM17 (ENSPPAG00000011687) #12	EHBP1 (ENSPPAG00000043965) #13	OTX1 (ENSPPAG00000028464) #14	WDPCP (ENSPPAG00000032819) #16	MDH1 (ENSPPAG00000042469) #17	ENSPPAG00000032238	UGP2 (ENSPPAG00000038898) #18	VPS54 (ENSPPAG00000028874) #19	PELI1 (ENSPPAG00000044117) #20	LGALSL (ENSPPAG00000039473) #21	AFTPH (ENSPPAG00000028223) #22	ENSPPAG00000031785	SERTAD2 (ENSPPAG00000033136) #23	SLC1A4 (ENSPPAG00000041051) #24	CEP68 (ENSPPAG00000026445) #25	RAB1A (ENSPPAG00000030253) #26	ENSPPAG00000030634 #27	ENSPPAG00000026570	SPRED2 (ENSPPAG00000042240) #28	ENSPPAG00000037169 #30	ETAA1 (ENSPPAG00000034986) #31	ENSPPAG00000037847 #32	ENSPPAG00000032606 #33	PNO1 (ENSPPAG00000039314) #34	CNRIP1 (ENSPPAG00000036249) #36	PLEK (ENSPPAG00000036621) #37
Orangutan	MODERN SPECIES	14	CCT4 (ENSPPYG00000012381) #8	COMMD1 (ENSPPYG00000012380) #9	ENSPPYG00000019018	B3GNT2 (ENSPPYG00000012379) #10	TMEM17 (ENSPPYG00000012378) #12	EHBP1 (ENSPPYG00000012377) #13	ENSPPYG00000030010	OTX1 (ENSPPYG00000012376) #14	WDPCP (ENSPPYG00000012374) #16	MDH1 (ENSPPYG00000012373) #17	UGP2 (ENSPPYG00000012371) #18	VPS54 (ENSPPYG00000012370) #19	PELI1 (ENSPPYG00000012369) #20	LGALSL (ENSPPYG00000012366) #21	ENSPPYG00000012365	AFTPH (ENSPPYG00000012364) #22	SERTAD2 (ENSPPYG00000035823) #23	SLC1A4 (ENSPPYG00000041756) #24	CEP68 (ENSPPYG00000012361) #25	RAB1A (ENSPPYG00000012360) #26	ACTR2 (ENSPPYG00000012359) #27	SPRED2 (ENSPPYG00000012358) #28	ENSPPYG00000012356 #30	ETAA1 (ENSPPYG00000012355) #31	C1D (ENSPPYG00000012354) #32	DNAAF10 (ENSPPYG00000012352) #33	PNO1 (ENSPPYG00000033861) #34	PPP3R1 (ENSPPYG00000031425) #35	CNRIP1 (ENSPPYG00000012351) #36	PLEK (ENSPPYG00000040535) #37	FBXO48 (ENSPPYG00000012736)
Gibbon	MODERN SPECIES	4	CCT4 (ENSNLEG00000009723) #8	COMMD1 (ENSNLEG00000033234) #9	B3GNT2 (ENSNLEG00000035442) #10	TMEM17 (ENSNLEG00000009759) #12	EHBP1 (ENSNLEG00000009764) #13	ENSNLEG00000027460	OTX1 (ENSNLEG00000009808) #14	WDPCP (ENSNLEG00000009810) #16	MDH1 (ENSNLEG00000009823) #17	ENSNLEG00000035245	UGP2 (ENSNLEG00000031494) #18	VPS54 (ENSNLEG00000009859) #19	PELI1 (ENSNLEG00000009891) #20	ENSNLEG00000028443	LGALSL (ENSNLEG00000031680) #21	AFTPH (ENSNLEG00000009902) #22	ENSNLEG00000009923	SERTAD2 (ENSNLEG00000029151) #23	SLC1A4 (ENSNLEG00000009927) #24	ENSNLEG00000009939 #25	RAB1A (ENSNLEG00000009944) #26	ACTR2 (ENSNLEG00000009948) #27	SPRED2 (ENSNLEG00000009959) #28	ENSNLEG00000027615	ENSNLEG00000009963 #30	ETAA1 (ENSNLEG00000009972) #31	ENSNLEG00000032919 #32	DNAAF10 (ENSNLEG00000030882) #33	PNO1 (ENSNLEG00000034233) #34	PPP3R1 (ENSNLEG00000026538) #35	CNRIP1 (ENSNLEG00000009999) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154958.mb #26	ENSGT00940000154556.tb.a #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l #34	ENSGT00940000156530.c #35
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154958.mb #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34
Olive baboon	MODERN SPECIES	5	CCT4 (ENSPANG00000019105) #8	COMMD1 (ENSPANG00000006093) #9	B3GNT2 (ENSPANG00000007808) #10	ENSPANG00000051251	TMEM17 (ENSPANG00000042367) #12	EHBP1 (ENSPANG00000016912) #13	OTX1 (ENSPANG00000038245) #14	WDPCP (ENSPANG00000019775) #16	ENSPANG00000044221	ENSPANG00000006332	MDH1 (ENSPANG00000014437) #17	UGP2 (ENSPANG00000020689) #18	VPS54 (ENSPANG00000022299) #19	PELI1 (ENSPANG00000008630) #20	LGALSL (ENSPANG00000007113) #21	AFTPH (ENSPANG00000019355) #22	ENSPANG00000033862	SERTAD2 (ENSPANG00000021214) #23	SLC1A4 (ENSPANG00000025917) #24	CEP68 (ENSPANG00000009710) #25	RAB1A (ENSPANG00000010485) #26	ACTR2 (ENSPANG00000007073) #27	SPRED2 (ENSPANG00000015698) #28	ENSPANG00000049032	MEIS1 (ENSPANG00000008059) #30	ETAA1 (ENSPANG00000007449) #31	C1D (ENSPANG00000002886) #32	DNAAF10 (ENSPANG00000011915) #33	ENSPANG00000031684 #34	PPP3R1 (ENSPANG00000024026) #35	CNRIP1 (ENSPANG00000029881) #36
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34
Drill	MODERN SPECIES	924															LGALSL (ENSMLEG00000042260) #21	AFTPH (ENSMLEG00000030266) #22	ENSMLEG00000028092	SERTAD2 (ENSMLEG00000023036) #23	ENSMLEG00000029653	SLC1A4 (ENSMLEG00000036589) #24	CEP68 (ENSMLEG00000035123) #25	RAB1A (ENSMLEG00000042535) #26	ACTR2 (ENSMLEG00000038155) #27	SPRED2 (ENSMLEG00000038726) #28	ENSMLEG00000042632	MEIS1 (ENSMLEG00000034716) #30	ETAA1 (ENSMLEG00000044155) #31	ENSMLEG00000040103
Sooty mangabey	MODERN SPECIES	494	FAM161A (ENSCATG00000043996) #7	CCT4 (ENSCATG00000038933) #8	ENSCATG00000038149	COMMD1 (ENSCATG00000011551) #9	B3GNT2 (ENSCATG00000011785) #10	TMEM17 (ENSCATG00000038173) #12	EHBP1 (ENSCATG00000030805) #13	OTX1 (ENSCATG00000031998) #14	WDPCP (ENSCATG00000043458) #16	MDH1 (ENSCATG00000030537) #17	ENSCATG00000010001	UGP2 (ENSCATG00000038117) #18	VPS54 (ENSCATG00000000035) #19	PELI1 (ENSCATG00000031456) #20	LGALSL (ENSCATG00000029852) #21	AFTPH (ENSCATG00000032038) #22	ENSCATG00000045350	SERTAD2 (ENSCATG00000012102) #23	SLC1A4 (ENSCATG00000036187) #24	CEP68 (ENSCATG00000032378) #25	RAB1A (ENSCATG00000030853) #26	ACTR2 (ENSCATG00000036025) #27	SPRED2 (ENSCATG00000034117) #28	ENSCATG00000045181	ENSCATG00000012177	MEIS1 (ENSCATG00000030958) #30	ETAA1 (ENSCATG00000036073) #31	ENSCATG00000033727	C1D (ENSCATG00000045336) #32	DNAAF10 (ENSCATG00000028444) #33	PNO1 (ENSCATG00000018547) #34
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00910000147398	ENSGT00940000155590.g.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000010283.ab.a	ENSGT00390000015405.s #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34	ENSGT00940000156530.c #35
Pig-tailed macaque	MODERN SPECIES	341	XPO1 (ENSMNEG00000030909)	FAM161A (ENSMNEG00000031037) #7	CCT4 (ENSMNEG00000044353) #8	COMMD1 (ENSMNEG00000024928) #9	B3GNT2 (ENSMNEG00000025770) #10	TMEM17 (ENSMNEG00000040952) #12	ENSMNEG00000038346	EHBP1 (ENSMNEG00000043070) #13	OTX1 (ENSMNEG00000044308) #14	WDPCP (ENSMNEG00000030809) #16	MDH1 (ENSMNEG00000039034) #17	UGP2 (ENSMNEG00000038452) #18	VPS54 (ENSMNEG00000031281) #19	PELI1 (ENSMNEG00000030553) #20	LGALSL (ENSMNEG00000029755) #21	AFTPH (ENSMNEG00000040816) #22	ENSMNEG00000025227	SERTAD2 (ENSMNEG00000008861) #23	ENSMNEG00000006388	SLC1A4 (ENSMNEG00000004689) #24	CEP68 (ENSMNEG00000032212) #25	ENSMNEG00000042121 #26	ACTR2 (ENSMNEG00000044163) #27	SPRED2 (ENSMNEG00000028343) #28	ENSMNEG00000004414	ENSMNEG00000023818	MEIS1 (ENSMNEG00000037352) #30	ETAA1 (ENSMNEG00000043227) #31	ENSMNEG00000038737	C1D (ENSMNEG00000040612) #32	DNAAF10 (ENSMNEG00000027774) #33
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #16	ENSGT00530000063410.a.h #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.lb.a.a #26	ENSGT00940000154556.tb.a #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405.s.c #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052.l.b #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Rhesus	MODERN SPECIES	4	CCT4 (ENSMMUG00000013973) #8	COMMD1 (ENSMMUG00000030824) #9	B3GNT2 (ENSMMUG00000014181) #10	TMEM17 (ENSMMUG00000057986) #12	EHBP1 (ENSMMUG00000016668) #13	OTX1 (ENSMMUG00000051405) #14	ENSMMUG00000030822	WDPCP (ENSMMUG00000003979) #16	MDH1 (ENSMMUG00000006163) #17	ENSMMUG00000060943	UGP2 (ENSMMUG00000008770) #18	VPS54 (ENSMMUG00000008772) #19	PELI1 (ENSMMUG00000059267) #20	LGALSL (ENSMMUG00000064711) #21	ENSMMUG00000006504	AFTPH (ENSMMUG00000006503) #22	ENSMMUG00000014862	SERTAD2 (ENSMMUG00000047067) #23	SLC1A4 (ENSMMUG00000010279) #24	CEP68 (ENSMMUG00000017019) #25	RAB1A (ENSMMUG00000021721) #26	ACTR2 (ENSMMUG00000002263) #27	SPRED2 (ENSMMUG00000044784) #28	MEIS1 (ENSMMUG00000011216) #30	ENSMMUG00000049443	ETAA1 (ENSMMUG00000062156) #31	C1D (ENSMMUG00000017209) #32	DNAAF10 (ENSMMUG00000017460) #33	PNO1 (ENSMMUG00000017461) #34	PPP3R1 (ENSMMUG00000046264) #35	CNRIP1 (ENSMMUG00000046992) #36
Crab-eating macaque	MODERN SPECIES	4	B3GNT2 (ENSMFAG00000029481) #10	TMEM17 (ENSMFAG00000063543) #12	EHBP1 (ENSMFAG00000043351) #13	OTX1 (ENSMFAG00000031554) #14	ENSMFAG00000030175	WDPCP (ENSMFAG00000033390) #16	MDH1 (ENSMFAG00000042090) #17	ENSMFAG00000059450	ENSMFAG00000056658	UGP2 (ENSMFAG00000035944) #18	VPS54 (ENSMFAG00000042525) #19	PELI1 (ENSMFAG00000045683) #20	ENSMFAG00000054126	ENSMFAG00000031922 #21	ENSMFAG00000035379	AFTPH (ENSMFAG00000041331) #22	ENSMFAG00000002213	ENSMFAG00000061518	SERTAD2 (ENSMFAG00000037664) #23	ENSMFAG00000062833	ENSMFAG00000053049	SLC1A4 (ENSMFAG00000003847) #24	CEP68 (ENSMFAG00000041409) #25	ENSMFAG00000049291	ENSMFAG00000064674	ENSMFAG00000046246 #26	ENSMFAG00000061807	ACTR2 (ENSMFAG00000044097) #27	SPRED2 (ENSMFAG00000031151) #28	MEIS1 (ENSMFAG00000042877) #30	ETAA1 (ENSMFAG00000039723) #31
Vervet Monkey	MODERN SPECIES	5	FAM161A (ENSCSAG00000014628) #7	CCT4 (ENSCSAG00000014640) #8	COMMD1 (ENSCSAG00000014646) #9	B3GNT2 (ENSCSAG00000019448) #10	ENSCSAG00000019447	TMEM17 (ENSCSAG00000014653) #12	EHBP1 (ENSCSAG00000014669) #13	OTX1 (ENSCSAG00000014675) #14	ENSCSAG00000019446	WDPCP (ENSCSAG00000014684) #16	MDH1 (ENSCSAG00000014691) #17	UGP2 (ENSCSAG00000014697) #18	VPS54 (ENSCSAG00000014705) #19	PELI1 (ENSCSAG00000014710) #20	LGALSL (ENSCSAG00000014717) #21	AFTPH (ENSCSAG00000014726) #22	SERTAD2 (ENSCSAG00000019445) #23	ENSCSAG00000019444	SLC1A4 (ENSCSAG00000014735) #24	CEP68 (ENSCSAG00000014763) #25	ENSCSAG00000014775	ACTR2 (ENSCSAG00000014779) #27	SPRED2 (ENSCSAG00000014788) #28	MEIS1 (ENSCSAG00000014795) #30	ETAA1 (ENSCSAG00000014804) #31	C1D (ENSCSAG00000014811) #32	DNAAF10 (ENSCSAG00000014819) #33	PNO1 (ENSCSAG00000014847) #34	PPP3R1 (ENSCSAG00000014862) #35	CNRIP1 (ENSCSAG00000014867) #36	PLEK (ENSCSAG00000014878) #37
Rhinopithecus	ANCESTRAL SPECIES	395													ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958.mb #26	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.tb.a #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30
Black snub-nosed monkey	MODERN SPECIES	998													PELI1 (ENSRBIG00000035790) #20	LGALSL (ENSRBIG00000034300) #21	ENSRBIG00000004731	AFTPH (ENSRBIG00000027840) #22	SERTAD2 (ENSRBIG00000038732) #23	ENSRBIG00000042401	SLC1A4 (ENSRBIG00000036897) #24	CEP68 (ENSRBIG00000036957) #25	ENSRBIG00000037235	ACTR2 (ENSRBIG00000040326) #27	ENSRBIG00000039931	SPRED2 (ENSRBIG00000030392) #28	MEIS1 (ENSRBIG00000030397) #30
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3258														ENSRROG00000025016	LGALSL (ENSRROG00000038015) #21	AFTPH (ENSRROG00000037120) #22	ENSRROG00000031390
Golden snub-nosed monkey	MODERN SPECIES	3026																ENSRROG00000038317 #22	SERTAD2 (ENSRROG00000026882) #23	ENSRROG00000042327	SLC1A4 (ENSRROG00000032007) #24	CEP68 (ENSRROG00000030391) #25	ENSRROG00000044448 #26	ACTR2 (ENSRROG00000043956) #27	ENSRROG00000040495	SPRED2 (ENSRROG00000031997) #28	MEIS1 (ENSRROG00000036544) #30
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.g.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	139	USP34 (ENSOGAG00000012908)	XPO1 (ENSOGAG00000000143)	FAM161A (ENSOGAG00000024144) #7	CCT4 (ENSOGAG00000003974) #8	COMMD1 (ENSOGAG00000029292) #9	ENSOGAG00000028774 #10	TMEM17 (ENSOGAG00000015014) #12	EHBP1 (ENSOGAG00000005236) #13	OTX1 (ENSOGAG00000027686) #14	WDPCP (ENSOGAG00000026615) #16	ENSOGAG00000014487 #17	UGP2 (ENSOGAG00000013975) #18	VPS54 (ENSOGAG00000013980) #19	PELI1 (ENSOGAG00000013984) #20	LGALSL (ENSOGAG00000007901) #21	ENSOGAG00000011268 #22	SERTAD2 (ENSOGAG00000011272) #23	SLC1A4 (ENSOGAG00000005682) #24	CEP68 (ENSOGAG00000005687) #25	RAB1A (ENSOGAG00000026181) #26	ENSOGAG00000005688 #27
Bushbaby	MODERN SPECIES	202	SURF6 (ENSOGAG00000027199)	MED22 (ENSOGAG00000014026)	ENSOGAG00000014027	ENSOGAG00000024295	SURF2 (ENSOGAG00000031360)	STKLD1 (ENSOGAG00000014034)	REXO4 (ENSOGAG00000014040)	ENSOGAG00000014043	SLC2A6 (ENSOGAG00000014051)	MYMK (ENSOGAG00000025687)	ADAMTSL2 (ENSOGAG00000014056)	FAM163B (ENSOGAG00000006830)	DBH (ENSOGAG00000006832)	SARDH (ENSOGAG00000006836)	VAV2 (ENSOGAG00000028052)	ENSOGAG00000031006 #22	BRD3 (ENSOGAG00000004568)	WDR5 (ENSOGAG00000008960)	RXRA (ENSOGAG00000010970)	COL5A1 (ENSOGAG00000024645)	ENSOGAG00000027072	ENSOGAG00000034926	OLFM1 (ENSOGAG00000006739)	PPP1R26 (ENSOGAG00000025445)	PIERCE1 (ENSOGAG00000000548)	MRPS2 (ENSOGAG00000000550)	ENSOGAG00000032342	ENSOGAG00000013605	ENSOGAG00000008626	RALGDS (ENSOGAG00000008888)	ENSOGAG00000008886
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.g.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Lemuriformes_a	ANCESTRAL SPECIES	52	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.g.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00910000147398	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Coquerels sifaka	MODERN SPECIES	157	USP34 (ENSPCOG00000019384)	ENSPCOG00000026732	XPO1 (ENSPCOG00000023123)	FAM161A (ENSPCOG00000025568) #7	CCT4 (ENSPCOG00000024760) #8	COMMD1 (ENSPCOG00000002593) #9	TMEM17 (ENSPCOG00000003689) #12	EHBP1 (ENSPCOG00000013807) #13	OTX1 (ENSPCOG00000007128) #14	WDPCP (ENSPCOG00000021207) #16	ENSPCOG00000022476 #17	UGP2 (ENSPCOG00000021592) #18	VPS54 (ENSPCOG00000021532) #19	PELI1 (ENSPCOG00000016939) #20	LGALSL (ENSPCOG00000024215) #21	AFTPH (ENSPCOG00000015597) #22	ENSPCOG00000014082	SLC1A4 (ENSPCOG00000008394) #24	CEP68 (ENSPCOG00000017947) #25	RAB1A (ENSPCOG00000017244) #26	ACTR2 (ENSPCOG00000025808) #27	SPRED2 (ENSPCOG00000021475) #28	ENSPCOG00000003824	ENSPCOG00000017120	MEIS1 (ENSPCOG00000026417) #30
Greater bamboo lemur	MODERN SPECIES	617															LGALSL (ENSPSMG00000023973) #21	AFTPH (ENSPSMG00000024022) #22	SERTAD2 (ENSPSMG00000024045) #23	SLC1A4 (ENSPSMG00000000139) #24	CEP68 (ENSPSMG00000000219) #25	RAB1A (ENSPSMG00000000273) #26	ENSPSMG00000000286	ACTR2 (ENSPSMG00000000347) #27	SPRED2 (ENSPSMG00000000404) #28	MEIS1 (ENSPSMG00000000482) #30	ETAA1 (ENSPSMG00000000519) #31	C1D (ENSPSMG00000000528) #32	DNAAF10 (ENSPSMG00000000572) #33	PNO1 (ENSPSMG00000000616) #34	PPP3R1 (ENSPSMG00000000675) #35	CNRIP1 (ENSPSMG00000000727) #36	PLEK (ENSPSMG00000000754) #37
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	26	XPO1 (ENSMICG00000027770)	FAM161A (ENSMICG00000032665) #7	ENSMICG00000015263 #8	COMMD1 (ENSMICG00000036432) #9	TMEM17 (ENSMICG00000045940) #12	ENSMICG00000035187	EHBP1 (ENSMICG00000011224) #13	ENSMICG00000036558	OTX1 (ENSMICG00000032707) #14	WDPCP (ENSMICG00000017077) #16	ENSMICG00000015195 #17	UGP2 (ENSMICG00000006509) #18	VPS54 (ENSMICG00000035608) #19	PELI1 (ENSMICG00000044746) #20	LGALSL (ENSMICG00000031755) #21	AFTPH (ENSMICG00000037342) #22	ENSMICG00000044806	ENSMICG00000041471	SLC1A4 (ENSMICG00000012577) #24	CEP68 (ENSMICG00000037255) #25	RAB1A (ENSMICG00000012587) #26	ENSMICG00000036415 #27	SPRED2 (ENSMICG00000006435) #28	MEIS1 (ENSMICG00000017054) #30	ETAA1 (ENSMICG00000033585) #31	C1D (ENSMICG00000032141) #32	DNAAF10 (ENSMICG00000010876) #33	ENSMICG00000010897 #34	PPP3R1 (ENSMICG00000037583) #35	CNRIP1 (ENSMICG00000003722) #36	PLEK (ENSMICG00000003728) #37
Mouse lemur	MODERN SPECIES	28													GABBR1 (ENSMICG00000001917)	MOG (ENSMICG00000013337)	ZFP57 (ENSMICG00000035396)	ENSMICG00000008613 #22	POLR1H (ENSMICG00000045696)	PPP1R11 (ENSMICG00000034291)	RNF39 (ENSMICG00000034392)	TRIM10 (ENSMICG00000044593)	ENSMICG00000004749	ENSMICG00000028052	GNL1 (ENSMICG00000014708)	PRR3 (ENSMICG00000042955)	ABCF1 (ENSMICG00000014745)	ENSMICG00000031444	PPP1R10 (ENSMICG00000038776)	MRPS18B (ENSMICG00000031536)	ATAT1 (ENSMICG00000014783)	C6orf136 (ENSMICG00000014805)	DHX16 (ENSMICG00000014819)
Atlantogenata	ANCESTRAL SPECIES	43								ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Afrotheria	ANCESTRAL SPECIES	46								ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Afrotheria_a	ANCESTRAL SPECIES	45								ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Elephant	MODERN SPECIES	278	GRK1 (ENSLAFG00000004234)	ATP4B (ENSLAFG00000008663)	ENSLAFG00000007927	TMCO3 (ENSLAFG00000005971)	DCUN1D2 (ENSLAFG00000005808)	ENSLAFG00000005807	TMEM17 (ENSLAFG00000005803) #12	OTX1 (ENSLAFG00000028656) #14	ENSLAFG00000016497	ENSLAFG00000025584 #16	MDH1 (ENSLAFG00000016504) #17	UGP2 (ENSLAFG00000000399) #18	VPS54 (ENSLAFG00000021799) #19	PELI1 (ENSLAFG00000010471) #20	LGALSL (ENSLAFG00000018660) #21	AFTPH (ENSLAFG00000007172) #22	SERTAD2 (ENSLAFG00000032288) #23	SLC1A4 (ENSLAFG00000017358) #24	CEP68 (ENSLAFG00000029833) #25	RAB1A (ENSLAFG00000016666) #26	ACTR2 (ENSLAFG00000010273) #27	SPRED2 (ENSLAFG00000000394) #28	MEIS1 (ENSLAFG00000003445) #30	ETAA1 (ENSLAFG00000009209) #31	C1D (ENSLAFG00000002083) #32	DNAAF10 (ENSLAFG00000000042) #33	PNO1 (ENSLAFG00000000046) #34	PPP3R1 (ENSLAFG00000022682) #35	CNRIP1 (ENSLAFG00000006280) #36	PLEK (ENSLAFG00000005718) #37	FBXO48 (ENSLAFG00000026127)
Hyrax	MODERN SPECIES	1593																AFTPH (ENSPCAG00000002639) #22
Tenrec	MODERN SPECIES	1972																AFTPH (ENSETEG00000012323) #22	ENSETEG00000012326
Xenarthra	ANCESTRAL SPECIES	586											ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24
Sloth	MODERN SPECIES	1783																AFTPH (ENSCHOG00000010476) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2485	TUBA4A (ENSDNOG00000014145)	STK16 (ENSDNOG00000014129)	GLB1L (ENSDNOG00000014106)	ANKZF1 (ENSDNOG00000014074)	ATG9A (ENSDNOG00000014052)	ABCB6 (ENSDNOG00000049122)	ZFAND2B (ENSDNOG00000014010)	RETREG2 (ENSDNOG00000044652)	CNPPD1 (ENSDNOG00000038044)	ENSDNOG00000043230	NHEJ1 (ENSDNOG00000013657)	IHH (ENSDNOG00000034584)	CFAP65 (ENSDNOG00000024420)	CRYBA2 (ENSDNOG00000013858)	FEV (ENSDNOG00000015239)	ENSDNOG00000034760 #22	WNT10A (ENSDNOG00000015184)	PRKAG3 (ENSDNOG00000002917)	ENSDNOG00000034779	ENSDNOG00000014864
Armadillo	MODERN SPECIES	2205								WDPCP (ENSDNOG00000038652) #16	ENSDNOG00000047467	MDH1 (ENSDNOG00000013329) #17	UGP2 (ENSDNOG00000014882) #18	VPS54 (ENSDNOG00000010697) #19	PELI1 (ENSDNOG00000047280) #20	LGALSL (ENSDNOG00000036857) #21	ENSDNOG00000043010	ENSDNOG00000044856 #22	ENSDNOG00000047214	ENSDNOG00000040550	SERTAD2 (ENSDNOG00000005514) #23	SLC1A4 (ENSDNOG00000005164) #24
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Opossum	MODERN SPECIES		COMMD1 (ENSMODG00000002887) #9	B3GNT2 (ENSMODG00000023125) #10	TMEM17 (ENSMODG00000002895) #12	ENSMODG00000046978	EHBP1 (ENSMODG00000002986) #13	OTX1 (ENSMODG00000037978) #14	ENSMODG00000038398	WDPCP (ENSMODG00000003049) #16	MDH1 (ENSMODG00000003073) #17	ENSMODG00000038904	ENSMODG00000003102 #18	VPS54 (ENSMODG00000003191) #19	PELI1 (ENSMODG00000003212) #20	ENSMODG00000003226 #21	ENSMODG00000047159	AFTPH (ENSMODG00000003235) #22	SERTAD2 (ENSMODG00000023126) #23	SLC1A4 (ENSMODG00000003310) #24	ENSMODG00000003315 #25	RAB1A (ENSMODG00000003340) #26	ENSMODG00000047741	ACTR2 (ENSMODG00000003364) #27	SPRED2 (ENSMODG00000003380) #28	MEIS1 (ENSMODG00000003396) #30	ENSMODG00000003554 #31	C1D (ENSMODG00000003561) #32	DNAAF10 (ENSMODG00000003598) #33	PNO1 (ENSMODG00000003567) #34	ENSMODG00000003621	PPP3R1 (ENSMODG00000003614) #35	CNRIP1 (ENSMODG00000042412) #36
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956.n #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956.n #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Common wonbat	MODERN SPECIES	1017	ENSVURG00010013612 #7	CCT4 (ENSVURG00010013602) #8	COMMD1 (ENSVURG00010013596) #9	B3GNT2 (ENSVURG00010013583) #10	TMEM17 (ENSVURG00010013563) #12	EHBP1 (ENSVURG00010013361) #13	OTX1 (ENSVURG00010013336) #14	ENSVURG00010013329	WDPCP (ENSVURG00010013315) #16	MDH1 (ENSVURG00010013259) #17	UGP2 (ENSVURG00010013228) #18	VPS54 (ENSVURG00010013192) #19	PELI1 (ENSVURG00010013173) #20	LGALSL (ENSVURG00010013162) #21	ENSVURG00010013145	AFTPH (ENSVURG00010013132) #22	SERTAD2 (ENSVURG00010013124) #23	SLC1A4 (ENSVURG00010013104) #24	ENSVURG00010013094 #25	RAB1A (ENSVURG00010013043) #26	ACTR2 (ENSVURG00010013014) #27	SPRED2 (ENSVURG00010012998) #28	MEIS1 (ENSVURG00010012689) #30	ENSVURG00010012665	ENSVURG00010012656 #31	C1D (ENSVURG00010012637) #32	DNAAF10 (ENSVURG00010012624) #33	PNO1 (ENSVURG00010012614) #34	PPP3R1 (ENSVURG00010012603) #35	CNRIP1 (ENSVURG00010012599) #36	PLEK (ENSVURG00010012588) #37
koala	MODERN SPECIES	20	ENSPCIG00000024931	COMMD1 (ENSPCIG00000024929) #9	ENSPCIG00000018941	B3GNT2 (ENSPCIG00000024925) #10	TMEM17 (ENSPCIG00000024919) #12	EHBP1 (ENSPCIG00000005257) #13	OTX1 (ENSPCIG00000024582) #14	ENSPCIG00000037374	WDPCP (ENSPCIG00000024581) #16	MDH1 (ENSPCIG00000024579) #17	UGP2 (ENSPCIG00000022314) #18	VPS54 (ENSPCIG00000022325) #19	PELI1 (ENSPCIG00000022340) #20	LGALSL (ENSPCIG00000020092) #21	ENSPCIG00000025803	AFTPH (ENSPCIG00000025802) #22	SERTAD2 (ENSPCIG00000025805) #23	SLC1A4 (ENSPCIG00000023205) #24	ENSPCIG00000023208 #25	RAB1A (ENSPCIG00000023212) #26	ACTR2 (ENSPCIG00000023217) #27	SPRED2 (ENSPCIG00000035990) #28	MEIS1 (ENSPCIG00000006632) #30	ENSPCIG00000016961 #31	ENSPCIG00000018629 #32	DNAAF10 (ENSPCIG00000018627) #33	PNO1 (ENSPCIG00000018626) #34	PPP3R1 (ENSPCIG00000018625) #35	CNRIP1 (ENSPCIG00000037069) #36	PLEK (ENSPCIG00000018623) #37	FBXO48 (ENSPCIG00000018620)
Tasmanian devil	MODERN SPECIES	1	USP34 (ENSSHAG00000012141)	XPO1 (ENSSHAG00000011230)	ENSSHAG00000008962 #7	CCT4 (ENSSHAG00000008579) #8	B3GNT2 (ENSSHAG00000027237) #10	COMMD1 (ENSSHAG00000005803) #9	TMEM17 (ENSSHAG00000014235) #12	EHBP1 (ENSSHAG00000011490) #13	OTX1 (ENSSHAG00000011389) #14	WDPCP (ENSSHAG00000009447) #16	MDH1 (ENSSHAG00000008365) #17	UGP2 (ENSSHAG00000003089) #18	VPS54 (ENSSHAG00000000961) #19	PELI1 (ENSSHAG00000024330) #20	LGALSL (ENSSHAG00000026611) #21	AFTPH (ENSSHAG00000010633) #22	ENSSHAG00000028826	SERTAD2 (ENSSHAG00000022880) #23	SLC1A4 (ENSSHAG00000029893) #24	ENSSHAG00000004687 #25	RAB1A (ENSSHAG00000027574) #26	ACTR2 (ENSSHAG00000000220) #27	SPRED2 (ENSSHAG00000030799) #28	MEIS1 (ENSSHAG00000016546) #30	ENSSHAG00000013030 #31	ENSSHAG00000012254	C1D (ENSSHAG00000020536) #32	DNAAF10 (ENSSHAG00000007449) #33	PNO1 (ENSSHAG00000007326) #34	PPP3R1 (ENSSHAG00000006122) #35	CNRIP1 (ENSSHAG00000030089) #36
Platypus	MODERN SPECIES	20	XPO1 (ENSOANG00000012417)	ENSOANG00000012418 #7	CCT4 (ENSOANG00000012419) #8	COMMD1 (ENSOANG00000012420) #9	B3GNT2 (ENSOANG00000012421) #10	TMEM17 (ENSOANG00000012422) #12	EHBP1 (ENSOANG00000012423) #13	OTX1 (ENSOANG00000044489) #14	WDPCP (ENSOANG00000012425) #16	MDH1 (ENSOANG00000012426) #17	UGP2 (ENSOANG00000012427) #18	VPS54 (ENSOANG00000012428) #19	PELI1 (ENSOANG00000012431) #20	LGALSL (ENSOANG00000012432) #21	ENSOANG00000036481	AFTPH (ENSOANG00000012433) #22	SERTAD2 (ENSOANG00000012435) #23	SLC1A4 (ENSOANG00000012436) #24	ENSOANG00000045432 #25	RAB1A (ENSOANG00000012438) #26	ACTR2 (ENSOANG00000039143) #27	SPRED2 (ENSOANG00000046721) #28	MEIS1 (ENSOANG00000012441) #30	ENSOANG00000012442 #31	DNAAF10 (ENSOANG00000008385) #33	PNO1 (ENSOANG00000045797) #34	ENSOANG00000008386 #35	CNRIP1 (ENSOANG00000037625) #36	PLEK (ENSOANG00000050161) #37	FBXO48 (ENSOANG00000008392)	ENSOANG00000008393
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Lepidosauria	ANCESTRAL SPECIES	69			ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156439.r.a	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248	ENSGT00390000010591
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000156439.r.a	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000154544	ENSGT00390000016976
Common wall lizard	MODERN SPECIES	11	TRAM2 (ENSPMRG00000002403)	ENSPMRG00000002457	ENSPMRG00000002460	ENSPMRG00000002463	RHAG (ENSPMRG00000002467)	ENSPMRG00000002473	ENSPMRG00000002482	ENSPMRG00000002506	ENSPMRG00000002513	ENSPMRG00000002532	ENSPMRG00000002539	ENSPMRG00000002563	GLYATL3 (ENSPMRG00000002579)	MMUT (ENSPMRG00000002599)	MLNR (ENSPMRG00000002658)	AFTPH (ENSPMRG00000002667) #22	ENSPMRG00000002692	SERTAD2 (ENSPMRG00000002700) #23	ENSPMRG00000002706	ENSPMRG00000002707	ENSPMRG00000002716	SLC1A4 (ENSPMRG00000002725) #24	CEP68 (ENSPMRG00000002741) #25	RAB1A (ENSPMRG00000002764) #26	ENSPMRG00000002778	ACTR2 (ENSPMRG00000002797) #27	SPRED2 (ENSPMRG00000002817) #28	ENSPMRG00000002838	MEIS1 (ENSPMRG00000002862) #30	ENSPMRG00000002903	ENSPMRG00000002914
Argentine black and white tegu	MODERN SPECIES	54	FAM161A (ENSSMRG00000005692) #7	CCT4 (ENSSMRG00000005614) #8	COMMD1 (ENSSMRG00000005611) #9	B3GNT2 (ENSSMRG00000005605) #10	ENSSMRG00000005599	TMEM17 (ENSSMRG00000005554) #12	EHBP1 (ENSSMRG00000005524) #13	OTX1 (ENSSMRG00000005510) #14	WDPCP (ENSSMRG00000005490) #16	MDH1 (ENSSMRG00000005439) #17	UGP2 (ENSSMRG00000005430) #18	VPS54 (ENSSMRG00000005426) #19	PELI1 (ENSSMRG00000005414) #20	LGALSL (ENSSMRG00000005386) #21	ENSSMRG00000005383	AFTPH (ENSSMRG00000005377) #22	SERTAD2 (ENSSMRG00000005372) #23	SLC1A4 (ENSSMRG00000005324) #24	ENSSMRG00000005322 #25	RAB1A (ENSSMRG00000005319) #26	ENSSMRG00000005312	ACTR2 (ENSSMRG00000005307) #27	ENSSMRG00000005304	ENSSMRG00000005300	SPRED2 (ENSSMRG00000005297) #28	ENSSMRG00000005289	ENSSMRG00000005283	MEIS1 (ENSSMRG00000005267) #30	C1D (ENSSMRG00000005249) #32	DNAAF10 (ENSSMRG00000005245) #33	PNO1 (ENSSMRG00000005236) #34
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156439.r.a	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156439.r.a.d	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES		ENSNNAG00000014050	ENSNNAG00000014035 #9	B3GNT2 (ENSNNAG00000014031) #10	TMEM17 (ENSNNAG00000014018) #12	EHBP1 (ENSNNAG00000013729) #13	OTX1 (ENSNNAG00000013651) #14	WDPCP (ENSNNAG00000013610) #16	MDH1 (ENSNNAG00000013583) #17	UGP2 (ENSNNAG00000013510) #18	VPS54 (ENSNNAG00000013453) #19	PELI1 (ENSNNAG00000013434) #20	ENSNNAG00000013415	LGALSL (ENSNNAG00000013404) #21	MLNR (ENSNNAG00000013400)	ENSNNAG00000013378	ENSNNAG00000013342 #22	SERTAD2 (ENSNNAG00000013335) #23	SLC1A4 (ENSNNAG00000013270) #24	ENSNNAG00000013240 #25	RAB1A (ENSNNAG00000013227) #26	ACTR2 (ENSNNAG00000013219) #27	SPRED2 (ENSNNAG00000013140) #28	MEIS1 (ENSNNAG00000013019) #30	C1D (ENSNNAG00000012988) #32	DNAAF10 (ENSNNAG00000012936) #33	PNO1 (ENSNNAG00000012918) #34	PPP3R1 (ENSNNAG00000012886) #35	ENSNNAG00000012878	CNRIP1 (ENSNNAG00000012863) #36	PLEK (ENSNNAG00000012798) #37	FBXO48 (ENSNNAG00000012774)
Indian cobra	MODERN SPECIES	3	EDRF1 (ENSNNAG00000003301)	ENSNNAG00000003361	CTBP2 (ENSNNAG00000003385)	ZRANB1 (ENSNNAG00000003411)	ABRAXAS2 (ENSNNAG00000003424)	EEF1AKMT2 (ENSNNAG00000003438)	FAM53B (ENSNNAG00000003446)	LHPP (ENSNNAG00000003472)	ENSNNAG00000003572	OAT (ENSNNAG00000003584)	ENSNNAG00000003603	CHST15 (ENSNNAG00000003620)	CPXM2 (ENSNNAG00000003642)	ENSNNAG00000003675	ENSNNAG00000003699	ENSNNAG00000003714 #22	BUB3 (ENSNNAG00000003731) ##33	HMX2 (ENSNNAG00000003744)	HMX3 (ENSNNAG00000003758)	ACADSB (ENSNNAG00000003781)	IKZF5 (ENSNNAG00000003799)	PSTK (ENSNNAG00000003820)	ENSNNAG00000003842	C10orf88 (ENSNNAG00000003898)	ENSNNAG00000003929	ENSNNAG00000003976	ENSNNAG00000004497	ENSNNAG00000004527	ENSNNAG00000004649	ENSNNAG00000004671	ENSNNAG00000004693
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT01100000263484.C.a.l	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248	ENSGT00390000010591
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000156439.r.a.d	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A.h #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Eastern brown snake	MODERN SPECIES	56	ENSPTXG00000006487 #7	ENSPTXG00000006489 #7	CCT4 (ENSPTXG00000006490) #8	COMMD1 (ENSPTXG00000006517) #9	B3GNT2 (ENSPTXG00000006518) #10	TMEM17 (ENSPTXG00000006519) #12	EHBP1 (ENSPTXG00000006520) #13	OTX1 (ENSPTXG00000006521) #14	ENSPTXG00000006522 #16	MDH1 (ENSPTXG00000006523) #17	UGP2 (ENSPTXG00000006524) #18	VPS54 (ENSPTXG00000006525) #19	PELI1 (ENSPTXG00000006526) #20	LGALSL (ENSPTXG00000006527) #21	MLNR (ENSPTXG00000006528)	AFTPH (ENSPTXG00000006529) #22	ENSPTXG00000005770	SERTAD2 (ENSPTXG00000005772) #23	SLC1A4 (ENSPTXG00000005773) #24	ENSPTXG00000005775 #25	RAB1A (ENSPTXG00000005777) #26	ACTR2 (ENSPTXG00000005779) #27	SPRED2 (ENSPTXG00000005781) #28	MEIS1 (ENSPTXG00000005783) #30	C1D (ENSPTXG00000005785) #32	DNAAF10 (ENSPTXG00000005787) #33	PNO1 (ENSPTXG00000005788) #34	PPP3R1 (ENSPTXG00000005790) #35	CNRIP1 (ENSPTXG00000005792) #36	PLEK (ENSPTXG00000005794) #37	FBXO48 (ENSPTXG00000005797)
Mainland tiger snake	MODERN SPECIES	23		FAM161A (ENSNSUG00000019087) #7	CCT4 (ENSNSUG00000019089) #8	ENSNSUG00000019090	B3GNT2 (ENSNSUG00000019091) #10	TMEM17 (ENSNSUG00000019093) #12	EHBP1 (ENSNSUG00000019094) #13	OTX1 (ENSNSUG00000019118) #14	WDPCP (ENSNSUG00000019119) #16	MDH1 (ENSNSUG00000019120) #17	UGP2 (ENSNSUG00000019121) #18	VPS54 (ENSNSUG00000019122) #19	PELI1 (ENSNSUG00000019123) #20	LGALSL (ENSNSUG00000019124) #21	MLNR (ENSNSUG00000019125)	AFTPH (ENSNSUG00000019132) #22	ENSNSUG00000019134	SERTAD2 (ENSNSUG00000019135) #23	ENSNSUG00000019136	SLC1A4 (ENSNSUG00000019138) #24	ENSNSUG00000019162 #25	RAB1A (ENSNSUG00000019164) #26	ACTR2 (ENSNSUG00000019165) #27	SPRED2 (ENSNSUG00000019166) #28	MEIS1 (ENSNSUG00000019167) #30	C1D (ENSNSUG00000019174) #32	DNAAF10 (ENSNSUG00000019175) #33	PNO1 (ENSNSUG00000019176) #34	PPP3R1 (ENSNSUG00000019177) #35	CNRIP1 (ENSNSUG00000019179) #36	PLEK (ENSNSUG00000019180) #37
Blue-lipped sea krait	MODERN SPECIES	8908														MLNR (ENSLLTG00000003749)	ENSLLTG00000003713	AFTPH (ENSLLTG00000003678) #22
Lizard	MODERN SPECIES		LSS (ENSACAG00000004914)	SPATC1L (ENSACAG00000042410)	FTCD (ENSACAG00000004847)	COL6A2 (ENSACAG00000004843)	ENSACAG00000004735	ENSACAG00000036057	ENSACAG00000043473	ENSACAG00000004607	RAB17 (ENSACAG00000004554)	PRLH (ENSACAG00000020999)	MLPH (ENSACAG00000004551)	ENSACAG00000040968	COL6A3 (ENSACAG00000004231)	LGALSL (ENSACAG00000001605) #21	ENSACAG00000001649	AFTPH (ENSACAG00000001654) #22	SERTAD2 (ENSACAG00000001714) #23	SLC1A4 (ENSACAG00000001717) #24	ENSACAG00000001863 #25	RAB1A (ENSACAG00000042522) #26	ENSACAG00000001866	ACTR2 (ENSACAG00000001918) #27	SPRED2 (ENSACAG00000002009) #28	MEIS1 (ENSACAG00000002083) #30	ENSACAG00000038561	C1D (ENSACAG00000001337) #32	DNAAF10 (ENSACAG00000001044) #33	PNO1 (ENSACAG00000001218) #34	ENSACAG00000040514 #35	CNRIP1 (ENSACAG00000000999) #36	PLEK (ENSACAG00000000871) #37
tuatara	MODERN SPECIES	78											SPRED2 (ENSSPUG00000012741) #28	ACTR2 (ENSSPUG00000012816) #27	RAB1A (ENSSPUG00000012822) #26	ENSSPUG00000012834 #25	SLC1A4 (ENSSPUG00000012843) #24	AFTPH (ENSSPUG00000012864) #22	ENSSPUG00000012880	LGALSL (ENSSPUG00000012885) #21	PELI1 (ENSSPUG00000012897) #20	VPS54 (ENSSPUG00000012900) #19	UGP2 (ENSSPUG00000012916) #18	MDH1 (ENSSPUG00000012931) #17	WDPCP (ENSSPUG00000012958) #16	OTX1 (ENSSPUG00000012988) #14	EHBP1 (ENSSPUG00000013010) #13	TMEM17 (ENSSPUG00000013034) #12	B3GNT2 (ENSSPUG00000013043) #10	COMMD1 (ENSSPUG00000013049) #9	CCT4 (ENSSPUG00000013058) #8	FAM161A (ENSSPUG00000013112) #7
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Archosauria	ANCESTRAL SPECIES	29	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Aves	ANCESTRAL SPECIES	35	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Neognathae	ANCESTRAL SPECIES	32	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Great tit	MODERN SPECIES	22	TRMT6 (ENSPMJG00000002846)	MCM8 (ENSPMJG00000002840)	CRLS1 (ENSPMJG00000002831)	COMMD1 (ENSPMJG00000002828) #9	B3GNT2 (ENSPMJG00000002825) #10	TMEM17 (ENSPMJG00000002814) #12	EHBP1 (ENSPMJG00000002565) #13	OTX1 (ENSPMJG00000002556) #14	WDPCP (ENSPMJG00000002462) #16	MDH1 (ENSPMJG00000002452) #17	UGP2 (ENSPMJG00000002442) #18	VPS54 (ENSPMJG00000002369) #19	PELI1 (ENSPMJG00000002305) #20	LGALSL (ENSPMJG00000002274) #21	ENSPMJG00000002259	AFTPH (ENSPMJG00000002220) #22	SERTAD2 (ENSPMJG00000002211) #23	SLC1A4 (ENSPMJG00000002145) #24	CEP68 (ENSPMJG00000002124) #25	RAB1A (ENSPMJG00000002113) #26	ACTR2 (ENSPMJG00000002085) #27	SPRED2 (ENSPMJG00000002067) #28	MEIS1 (ENSPMJG00000001854) #30	ENSPMJG00000001774 #31	C1D (ENSPMJG00000001708) #32	DNAAF10 (ENSPMJG00000001703) #33	PNO1 (ENSPMJG00000001695) #34	PPP3R1 (ENSPMJG00000001689) #35	CNRIP1 (ENSPMJG00000001670) #36	PLEK (ENSPMJG00000001665) #37	FBXO48 (ENSPMJG00000001663)
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Flycatcher	MODERN SPECIES	21	CHGB (ENSFALG00000013569)	TRMT6 (ENSFALG00000013575)	MCM8 (ENSFALG00000013581)	CRLS1 (ENSFALG00000013583)	COMMD1 (ENSFALG00000013585) #9	ENSFALG00000014145 #10	TMEM17 (ENSFALG00000013589) #12	EHBP1 (ENSFALG00000013591) #13	OTX1 (ENSFALG00000013593) #14	WDPCP (ENSFALG00000013596) #16	MDH1 (ENSFALG00000013597) #17	UGP2 (ENSFALG00000013598) #18	VPS54 (ENSFALG00000013599) #19	PELI1 (ENSFALG00000013605) #20	LGALSL (ENSFALG00000013611) #21	AFTPH (ENSFALG00000013616) #22	ENSFALG00000028308	SERTAD2 (ENSFALG00000014149) #23	SLC1A4 (ENSFALG00000013619) #24	CEP68 (ENSFALG00000013621) #25	RAB1A (ENSFALG00000023532) #26	ENSFALG00000027263	ACTR2 (ENSFALG00000026727) #27	SPRED2 (ENSFALG00000028802) #28	MEIS1 (ENSFALG00000013636) #30	ENSFALG00000013638 #31	C1D (ENSFALG00000024869) #32	PNO1 (ENSFALG00000029069) #34	WDR92 (ENSFALG00000028071) #33	PPP3R1 (ENSFALG00000013648) #35	CNRIP1 (ENSFALG00000027124) #36
Passeriformes_g	ANCESTRAL SPECIES	42	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Passeroidea	ANCESTRAL SPECIES	41	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Zebra finch	MODERN SPECIES	23	TRMT6 (ENSTGUG00000002195)	MCM8 (ENSTGUG00000002203)	CRLS1 (ENSTGUG00000002210)	COMMD1 (ENSTGUG00000002215) #9	B3GNT2 (ENSTGUG00000002218) #10	TMEM17 (ENSTGUG00000002226) #12	EHBP1 (ENSTGUG00000002228) #13	OTX1 (ENSTGUG00000019683) #14	WDPCP (ENSTGUG00000002232) #16	MDH1 (ENSTGUG00000002244) #17	UGP2 (ENSTGUG00000002252) #18	VPS54 (ENSTGUG00000002268) #19	PELI1 (ENSTGUG00000002289) #20	LGALSL (ENSTGUG00000025180) #21	ENSTGUG00000025533	AFTPH (ENSTGUG00000002302) #22	SERTAD2 (ENSTGUG00000024469) #23	SLC1A4 (ENSTGUG00000002315) #24	CEP68 (ENSTGUG00000029210) #25	RAB1A (ENSTGUG00000002328) #26	ACTR2 (ENSTGUG00000002335) #27	SPRED2 (ENSTGUG00000025635) #28	MEIS1 (ENSTGUG00000002353) #30	ENSTGUG00000002363 #31	C1D (ENSTGUG00000029046) #32	DNAAF10 (ENSTGUG00000018213) #33	PNO1 (ENSTGUG00000002369) #34	PPP3R1 (ENSTGUG00000018231) #35	CNRIP1 (ENSTGUG00000021224) #36	PLEK (ENSTGUG00000002380) #37	FBXO48 (ENSTGUG00000026746)
Common canary	MODERN SPECIES	38	GPCPD1 (ENSSCAG00000000473)	SHLD1 (ENSSCAG00000000512)	CHGB (ENSSCAG00000000518)	TRMT6 (ENSSCAG00000000543)	MCM8 (ENSSCAG00000000614)	CRLS1 (ENSSCAG00000000633)	TMEM17 (ENSSCAG00000000656) #12	EHBP1 (ENSSCAG00000000669) #13	OTX1 (ENSSCAG00000000714) #14	WDPCP (ENSSCAG00000000727) #16	MDH1 (ENSSCAG00000000782) #17	UGP2 (ENSSCAG00000000799) #18	VPS54 (ENSSCAG00000000820) #19	PELI1 (ENSSCAG00000000846) #20	LGALSL (ENSSCAG00000000875) #21	AFTPH (ENSSCAG00000000895) #22	ENSSCAG00000000909	SERTAD2 (ENSSCAG00000000919) #23	SLC1A4 (ENSSCAG00000000927) #24	CEP68 (ENSSCAG00000000934) #25	RAB1A (ENSSCAG00000000941) #26	ACTR2 (ENSSCAG00000000959) #27	SPRED2 (ENSSCAG00000000973) #28	MEIS1 (ENSSCAG00000000987) #30	ENSSCAG00000001007 #31	ENSSCAG00000001019 #31	C1D (ENSSCAG00000001030) #32	DNAAF10 (ENSSCAG00000001039) #33	PNO1 (ENSSCAG00000001058) #34	PPP3R1 (ENSSCAG00000001078) #35	CNRIP1 (ENSSCAG00000001087) #36
Medium ground finch	MODERN SPECIES	99							TMEM17 (ENSGFOG00000011060) #12	EHBP1 (ENSGFOG00000011082) #13	OTX1 (ENSGFOG00000011126) #14	WDPCP (ENSGFOG00000011130) #16	MDH1 (ENSGFOG00000011139) #17	UGP2 (ENSGFOG00000011150) #18	VPS54 (ENSGFOG00000011155) #19	PELI1 (ENSGFOG00000007371) #20	LGALSL (ENSGFOG00000007383) #21	AFTPH (ENSGFOG00000007395) #22	ENSGFOG00000007408	SERTAD2 (ENSGFOG00000007413) #23	SLC1A4 (ENSGFOG00000007417) #24	CEP68 (ENSGFOG00000007430) #25	RAB1A (ENSGFOG00000007437) #26	ACTR2 (ENSGFOG00000007444) #27	SPRED2 (ENSGFOG00000007456) #28	MEIS1 (ENSGFOG00000007474) #30	ENSGFOG00000007544 #31	C1D (ENSGFOG00000007555) #32	DNAAF10 (ENSGFOG00000007564) #33	PNO1 (ENSGFOG00000007572) #34	PPP3R1 (ENSGFOG00000007577) #35	CNRIP1 (ENSGFOG00000007585) #36	PLEK (ENSGFOG00000007591) #37
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Golden eagle	MODERN SPECIES	24	CHGB (ENSACCG00020005353)	TRMT6 (ENSACCG00020005372)	MCM8 (ENSACCG00020005397)	CRLS1 (ENSACCG00020005476)	COMMD1 (ENSACCG00020005501) #9	B3GNT2 (ENSACCG00020005515) #10	TMEM17 (ENSACCG00020005527) #12	EHBP1 (ENSACCG00020005580) #13	OTX1 (ENSACCG00020005656) #14	WDPCP (ENSACCG00020005678) #16	MDH1 (ENSACCG00020005699) #17	UGP2 (ENSACCG00020005728) #18	VPS54 (ENSACCG00020005801) #19	PELI1 (ENSACCG00020005906) #20	LGALSL (ENSACCG00020005930) #21	AFTPH (ENSACCG00020005956) #22	ENSACCG00020005980	SERTAD2 (ENSACCG00020005994) #23	SLC1A4 (ENSACCG00020006005) #24	CEP68 (ENSACCG00020006029) #25	RAB1A (ENSACCG00020006051) #26	ACTR2 (ENSACCG00020006080) #27	SPRED2 (ENSACCG00020006109) #28	MEIS1 (ENSACCG00020006130) #30	ENSACCG00020006175 #31	C1D (ENSACCG00020006189) #32	DNAAF10 (ENSACCG00020006200) #33	PNO1 (ENSACCG00020006212) #34	PPP3R1 (ENSACCG00020006223) #35	CNRIP1 (ENSACCG00020006234) #36	PLEK (ENSACCG00020006245) #37
Kakapo	MODERN SPECIES	23	TRMT6 (ENSSHBG00005014364)	MCM8 (ENSSHBG00005014414)	CRLS1 (ENSSHBG00005014928)	COMMD1 (ENSSHBG00005014933) #9	B3GNT2 (ENSSHBG00005014942) #10	TMEM17 (ENSSHBG00005014948) #12	EHBP1 (ENSSHBG00005014965) #13	OTX1 (ENSSHBG00005014991) #14	WDPCP (ENSSHBG00005015001) #16	MDH1 (ENSSHBG00005015017) #17	UGP2 (ENSSHBG00005015028) #18	VPS54 (ENSSHBG00005015051) #19	ENSSHBG00005015079	PELI1 (ENSSHBG00005015086) #20	LGALSL (ENSSHBG00005015090) #21	AFTPH (ENSSHBG00005015097) #22	ENSSHBG00005015104	SERTAD2 (ENSSHBG00005015121) #23	SLC1A4 (ENSSHBG00005015130) #24	CEP68 (ENSSHBG00005015142) #25	RAB1A (ENSSHBG00005015159) #26	ACTR2 (ENSSHBG00005015166) #27	SPRED2 (ENSSHBG00005015173) #28	ENSSHBG00005015181	MEIS1 (ENSSHBG00005015189) #30	ENSSHBG00005015207 #31	C1D (ENSSHBG00005015222) #32	DNAAF10 (ENSSHBG00005015235) #33	PNO1 (ENSSHBG00005015242) #34	PPP3R1 (ENSSHBG00005015250) #35	CNRIP1 (ENSSHBG00005015258) #36
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00530000063425.a.b	ENSGT00940000159118	ENSGT00390000006820	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00550000075024	ENSGT00530000063425.a.b	ENSGT00940000159118	ENSGT00390000006820	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Chicken	MODERN SPECIES	22	MSH6 (ENSGALG00010017746)	FBXO11 (ENSGALG00010017762)	FOXN2 (ENSGALG00010017768)	PPP1R21 (ENSGALG00010017797)	COMMD1 (ENSGALG00010017876) #9	B3GNT2 (ENSGALG00010017838) #10	TMEM17 (ENSGALG00010018880) #12	EHBP1 (ENSGALG00010016584) #13	OTX1 (ENSGALG00010016593) #14	WDPCP (ENSGALG00010016605) #16	MDH1 (ENSGALG00010016624) #17	UGP2 (ENSGALG00010018904) #18	VPS54 (ENSGALG00010018923) #19	PELI3 (ENSGALG00010018958) #20	LGALSL (ENSGALG00010017115) #21	AFTPH (ENSGALG00010017141) #22	ENSGALG00010017151	SERTAD2 (ENSGALG00010019243) #23	SLC1A4 (ENSGALG00010019257) #24	CEP68 (ENSGALG00010017594) #25	RAB1B (ENSGALG00010017622) #26	ENSGALG00010017627	ACTR2 (ENSGALG00010016276) #27	SPRED2 (ENSGALG00010017672) #28	MEIS1 (ENSGALG00010017708) #30	ENSGALG00010017722	ENSGALG00010017728	ETAA1 (ENSGALG00010017744) #31	C1D (ENSGALG00010017755) #32	DNAAF10 (ENSGALG00010017766) #33	PNO1 (ENSGALG00010017771) #34
Turkey	MODERN SPECIES	11	MSH6 (ENSMGAG00000005109)	FBXO11 (ENSMGAG00000005080)	FOXN2 (ENSMGAG00000005062)	PPP1R21 (ENSMGAG00000004979)	COMMD1 (ENSMGAG00000005060) #9	B3GNT2 (ENSMGAG00000015914) #10	TMEM17 (ENSMGAG00000004966) #12	EHBP1 (ENSMGAG00000004927) #13	WDPCP (ENSMGAG00000004854) #16	MDH1 (ENSMGAG00000004885) #17	UGP2 (ENSMGAG00000004824) #18	VPS54 (ENSMGAG00000004768) #19	PELI1 (ENSMGAG00000019753) #20	LGALSL (ENSMGAG00000004734) #21	ENSMGAG00000019014	AFTPH (ENSMGAG00000004693) #22	SERTAD2 (ENSMGAG00000015908) #23	SLC1A4 (ENSMGAG00000004682) #24	CEP68 (ENSMGAG00000004667) #25	RAB1A (ENSMGAG00000004611) #26	ENSMGAG00000019067	ACTR2 (ENSMGAG00000004587) #27	SPRED2 (ENSMGAG00000004563) #28	MEIS1 (ENSMGAG00000021593) #30	ENSMGAG00000004531 #31	DNAAF10 (ENSMGAG00000004517) #33	PNO1 (ENSMGAG00000004514) #34	PPP3R1 (ENSMGAG00000004474) #35	CNRIP1 (ENSMGAG00000004456) #36	PLEK (ENSMGAG00000004436) #37	FBXO48 (ENSMGAG00000004427)
Japanese quail	MODERN SPECIES	21	ENSCJPG00005011850	ENSCJPG00005011809	SNRPB2 (ENSCJPG00005011807)	OTOR (ENSCJPG00005011805)	TMEM17 (ENSCJPG00005011798) #12	EHBP1 (ENSCJPG00005011795) #13	OTX1 (ENSCJPG00005011794) #14	WDPCP (ENSCJPG00005011776) #16	MDH1 (ENSCJPG00005011775) #17	UGP2 (ENSCJPG00005011774) #18	VPS54 (ENSCJPG00005011596) #19	PELI1 (ENSCJPG00005011590) #20	ENSCJPG00005011569 #21	ENSCJPG00005011568 #21	ENSCJPG00005011566	AFTPH (ENSCJPG00005011562) #22	SERTAD2 (ENSCJPG00005011560) #23	SLC1A4 (ENSCJPG00005011555) #24	CEP68 (ENSCJPG00005011547) #25	RAB1A (ENSCJPG00005011546) #26	ACTR2 (ENSCJPG00005011545) #27	SPRED2 (ENSCJPG00005011544) #28	MEIS1 (ENSCJPG00005011532) #30	ENSCJPG00005011513 #31	C1D (ENSCJPG00005011500) #32	DNAAF10 (ENSCJPG00005011497) #33	PNO1 (ENSCJPG00005011496) #34	PPP3R1 (ENSCJPG00005011495) #35	CNRIP1 (ENSCJPG00005011494) #36	PLEK (ENSCJPG00005011490) #37	ENSCJPG00005011484
Anatidae	ANCESTRAL SPECIES	60	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00390000001858	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Duck	MODERN SPECIES	21	TRMT6 (ENSAPLG00000007761)	MCM8 (ENSAPLG00000007052)	CRLS1 (ENSAPLG00000007013)	COMMD1 (ENSAPLG00000006974) #9	B3GNT2 (ENSAPLG00000001464) #10	TMEM17 (ENSAPLG00000006949) #12	EHBP1 (ENSAPLG00000006773) #13	OTX1 (ENSAPLG00000024184) #14	WDPCP (ENSAPLG00000010025) #16	MDH1 (ENSAPLG00000009983) #17	UGP2 (ENSAPLG00000009870) #18	VPS54 (ENSAPLG00000009734) #19	PELI1 (ENSAPLG00000009701) #20	LGALSL (ENSAPLG00000022507) #21	ENSAPLG00000017313	AFTPH (ENSAPLG00000009640) #22	SERTAD2 (ENSAPLG00000000672) #23	SLC1A4 (ENSAPLG00000009621) #24	CEP68 (ENSAPLG00000016942) #25	RAB1A (ENSAPLG00000018342) #26	ACTR2 (ENSAPLG00000009440) #27	SPRED2 (ENSAPLG00000009387) #28	MEIS1 (ENSAPLG00000009141) #30	ENSAPLG00000025999 #31	C1D (ENSAPLG00000009320) #32	DNAAF10 (ENSAPLG00000029023) #33	PNO1 (ENSAPLG00000029102) #34	PPP3R1 (ENSAPLG00000023228) #35	CNRIP1 (ENSAPLG00000022779) #36	PLEK (ENSAPLG00000009140) #37	APLF (ENSAPLG00000009117)
Pink-footed goose	MODERN SPECIES	155														PELI1 (ENSABRG00000002957) #20	LGALSL (ENSABRG00000002936) #21	AFTPH (ENSABRG00000002918) #22	SERTAD2 (ENSABRG00000002908) #23	SLC1A4 (ENSABRG00000002879) #24	CEP68 (ENSABRG00000002866) #25	RAB1A (ENSABRG00000002833) #26	ACTR2 (ENSABRG00000002811) #27	SPRED2 (ENSABRG00000002801) #28	MEIS1 (ENSABRG00000002723) #30	ENSABRG00000002656	ENSABRG00000002632	ENSABRG00000002625 #31	C1D (ENSABRG00000002604) #32	DNAAF10 (ENSABRG00000002587) #33	PNO1 (ENSABRG00000002566) #34	PPP3R1 (ENSABRG00000002543) #35	CNRIP1 (ENSABRG00000002531) #36
African ostrich	MODERN SPECIES	1035	GPCPD1 (ENSSCUG00000016657)	SHLD1 (ENSSCUG00000016660)	CHGB (ENSSCUG00000016662)	TRMT6 (ENSSCUG00000016663)	MCM8 (ENSSCUG00000016665)	COMMD1 (ENSSCUG00000016672) #9	B3GNT2 (ENSSCUG00000016675) #10	TMEM17 (ENSSCUG00000016683) #12	EHBP1 (ENSSCUG00000016694) #13	WDPCP (ENSSCUG00000016705) #16	MDH1 (ENSSCUG00000016711) #17	UGP2 (ENSSCUG00000016718) #18	VPS54 (ENSSCUG00000016720) #19	PELI1 (ENSSCUG00000016725) #20	LGALSL (ENSSCUG00000016734) #21	AFTPH (ENSSCUG00000016739) #22	ENSSCUG00000016745	SERTAD2 (ENSSCUG00000016748) #23	SLC1A4 (ENSSCUG00000016756) #24	ENSSCUG00000016764 #25	RAB1A (ENSSCUG00000016768) #26	ACTR2 (ENSSCUG00000016771) #27	SPRED2 (ENSSCUG00000016776) #28	ENSSCUG00000016785 #30	ENSSCUG00000016796 #31	C1D (ENSSCUG00000016803) #32	DNAAF10 (ENSSCUG00000016805) #33	PNO1 (ENSSCUG00000016819) #34	PPP3R1 (ENSSCUG00000016836) #35	CNRIP1 (ENSSCUG00000016838) #36	PLEK (ENSSCUG00000016840) #37
Australian saltwater crocodile	MODERN SPECIES	60	ENSCPRG00005013195	FAM161A (ENSCPRG00005013180) #7	CCT4 (ENSCPRG00005013168) #8	COMMD1 (ENSCPRG00005013164) #9	TMEM17 (ENSCPRG00005013145) #12	EHBP1 (ENSCPRG00005013126) #13	ENSCPRG00005013108	WDPCP (ENSCPRG00005013098) #16	MDH1 (ENSCPRG00005013087) #17	UGP2 (ENSCPRG00005013070) #18	VPS54 (ENSCPRG00005013060) #19	PELI1 (ENSCPRG00005013051) #20	ENSCPRG00005013039	LGALSL (ENSCPRG00005013037) #21	ENSCPRG00005013030	AFTPH (ENSCPRG00005013021) #22	SERTAD2 (ENSCPRG00005013016) #23	SLC1A4 (ENSCPRG00005013000) #24	CEP68 (ENSCPRG00005012992) #25	RAB1A (ENSCPRG00005012987) #26	ENSCPRG00005012975	ACTR2 (ENSCPRG00005012952) #27	SPRED2 (ENSCPRG00005012941) #28	ENSCPRG00005012911	MEIS1 (ENSCPRG00005012878) #30	ENSCPRG00005012839 #31	C1D (ENSCPRG00005012813) #32	DNAAF10 (ENSCPRG00005012802) #33	PNO1 (ENSCPRG00005012776) #34	PPP3R1 (ENSCPRG00005012773) #35	CNRIP1 (ENSCPRG00005012769) #36
Cryptodira	ANCESTRAL SPECIES	49					ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37
Emydidae	ANCESTRAL SPECIES	41	ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00390000001858	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00950000183210.d.b	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
painted turtle	MODERN SPECIES	798			COMMD1 (ENSCPBG00000009436) #9	B3GNT2 (ENSCPBG00000009448) #10	TMEM17 (ENSCPBG00000009468) #12	ENSCPBG00000009473	EHBP1 (ENSCPBG00000009627) #13	OTX1 (ENSCPBG00000013188) #14	WDPCP (ENSCPBG00000013191) #16	MDH1 (ENSCPBG00000013198) #17	UGP2 (ENSCPBG00000013202) #18	VPS54 (ENSCPBG00000013204) #19	ENSCPBG00000013207	PELI1 (ENSCPBG00000013208) #20	LGALSL (ENSCPBG00000013218) #21	AFTPH (ENSCPBG00000013222) #22	ENSCPBG00000013228	SERTAD2 (ENSCPBG00000013231) #23	SLC1A4 (ENSCPBG00000013236) #24	CEP68 (ENSCPBG00000013240) #25	RAB1A (ENSCPBG00000013243) #26	ACTR2 (ENSCPBG00000013248) #27	SPRED2 (ENSCPBG00000013250) #28	ENSCPBG00000013254	MEIS1 (ENSCPBG00000013258) #30
Three-toed box turtle	MODERN SPECIES	62	ENSTMTG00000011585	FLRT3 (ENSTMTG00000011594)	ENSTMTG00000011617	COMMD1 (ENSTMTG00000011699) #9	B3GNT2 (ENSTMTG00000011706) #10	TMEM17 (ENSTMTG00000011710) #12	EHBP1 (ENSTMTG00000011723) #13	OTX1 (ENSTMTG00000011768) #14	ENSTMTG00000011785 #16	ENSTMTG00000011798	MDH1 (ENSTMTG00000011807) #17	UGP2 (ENSTMTG00000011829) #18	VPS54 (ENSTMTG00000011848) #19	PELI1 (ENSTMTG00000011887) #20	LGALSL (ENSTMTG00000011905) #21	AFTPH (ENSTMTG00000011932) #22	ENSTMTG00000011985	SERTAD2 (ENSTMTG00000012002) #23	ENSTMTG00000012010 #24	CEP68 (ENSTMTG00000012027) #25	RAB1A (ENSTMTG00000012038) #26	ACTR2 (ENSTMTG00000012053) #27	SPRED2 (ENSTMTG00000012084) #28	ENSTMTG00000012102	MEIS1 (ENSTMTG00000012126) #30	ENSTMTG00000012173	ENSTMTG00000012186 #31	ENSTMTG00000012204	C1D (ENSTMTG00000012215) #32	DNAAF10 (ENSTMTG00000012232) #33	PNO1 (ENSTMTG00000012253) #34
Testudinidae	DUPLICATION
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a.c #22	ENSGT00390000001858	ENSGT00940000154186.a.d #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36
Abingdon island giant tortoise	MODERN SPECIES	480														PELI1 (ENSCABG00000010573) #20	LGALSL (ENSCABG00000010574) #21	AFTPH (ENSCABG00000010582) #22	ENSCABG00000010583	SERTAD2 (ENSCABG00000010584) #23	ENSCABG00000010588	ENSCABG00000010589
Goode s thornscrub tortoise	MODERN SPECIES	17	FLRT3 (ENSGEVG00005009842)	ENSGEVG00005009818	ENSGEVG00005009613	COMMD1 (ENSGEVG00005009544) #9	B3GNT2 (ENSGEVG00005009523) #10	TMEM17 (ENSGEVG00005009491) #12	EHBP1 (ENSGEVG00005009124) #13	OTX1 (ENSGEVG00005009002) #14	ENSGEVG00005008975 #16	MDH1 (ENSGEVG00005004454) #17	UGP2 (ENSGEVG00005004320) #18	VPS54 (ENSGEVG00005004270) #19	PELI1 (ENSGEVG00005004247) #20	LGALSL (ENSGEVG00005004215) #21	ENSGEVG00005004188	ENSGEVG00005004165 #22	ENSGEVG00005004141 #22	SERTAD2 (ENSGEVG00005004127) #23	SLC1A4 (ENSGEVG00005004113) #24	CEP68 (ENSGEVG00005003967) #25	RAB1A (ENSGEVG00005003898) #26	ACTR2 (ENSGEVG00005003844) #27	SPRED2 (ENSGEVG00005003835) #28	MEIS1 (ENSGEVG00005003813) #30	ENSGEVG00005003795 #31	C1D (ENSGEVG00005003784) #32	DNAAF10 (ENSGEVG00005003777) #33	PNO1 (ENSGEVG00005003766) #34	PPP3R1 (ENSGEVG00005003753) #35	CNRIP1 (ENSGEVG00005003746) #36	PLEK (ENSGEVG00005003733) #37
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000153899.b.b #12	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a.c #22	ENSGT00390000001858	ENSGT00940000154186.a.d #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005009818	ENSGEVG00005009613	COMMD1 (ENSGEVG00005009544) #9	B3GNT2 (ENSGEVG00005009523) #10	TMEM17 (ENSGEVG00005009491) #12	EHBP1 (ENSGEVG00005009124) #13	OTX1 (ENSGEVG00005009002) #14	ENSGEVG00005008975 #16	MDH1 (ENSGEVG00005004454) #17	UGP2 (ENSGEVG00005004320) #18	VPS54 (ENSGEVG00005004270) #19	PELI1 (ENSGEVG00005004247) #20	LGALSL (ENSGEVG00005004215) #21	ENSGEVG00005004188	ENSGEVG00005004165 #22	ENSGEVG00005004141 #22	SERTAD2 (ENSGEVG00005004127) #23	SLC1A4 (ENSGEVG00005004113) #24	CEP68 (ENSGEVG00005003967) #25	RAB1A (ENSGEVG00005003898) #26	ACTR2 (ENSGEVG00005003844) #27	SPRED2 (ENSGEVG00005003835) #28	MEIS1 (ENSGEVG00005003813) #30	ENSGEVG00005003795 #31	C1D (ENSGEVG00005003784) #32	DNAAF10 (ENSGEVG00005003777) #33	PNO1 (ENSGEVG00005003766) #34	PPP3R1 (ENSGEVG00005003753) #35	CNRIP1 (ENSGEVG00005003746) #36	PLEK (ENSGEVG00005003733) #37	FBXO48 (ENSGEVG00005003719)
Chinese turtle	MODERN SPECIES	375				KIF16B (ENSPSIG00000009336)	COMMD1 (ENSPSIG00000013161) #9	B3GNT2 (ENSPSIG00000001211) #10	TMEM17 (ENSPSIG00000013175) #12	EHBP1 (ENSPSIG00000013180) #13	WDPCP (ENSPSIG00000013662) #16	MDH1 (ENSPSIG00000014797) #17	UGP2 (ENSPSIG00000015139) #18	VPS54 (ENSPSIG00000016091) #19	PELI1 (ENSPSIG00000017442) #20	ENSPSIG00000017632	LGALSL (ENSPSIG00000017748) #21	AFTPH (ENSPSIG00000017890) #22	SERTAD2 (ENSPSIG00000017893) #23	SLC1A4 (ENSPSIG00000017947) #24	CEP68 (ENSPSIG00000007957) #25	RAB1A (ENSPSIG00000008028) #26	ACTR2 (ENSPSIG00000008124) #27	SPRED2 (ENSPSIG00000008800) #28	MEIS1 (ENSPSIG00000009187) #30	ENSPSIG00000001224	ENSPSIG00000009822 #31	ENSPSIG00000001231	C1D (ENSPSIG00000010015) #32	DNAAF10 (ENSPSIG00000010344) #33	PNO1 (ENSPSIG00000010533) #34	PPP3R1 (ENSPSIG00000010550) #35	CNRIP1 (ENSPSIG00000010556) #36
Anura	ANCESTRAL SPECIES	16	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154347.a	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000006902	B3GNT2 (ENSLLEG00000006916) #10	EHBP1 (ENSLLEG00000006950) #13	ENSLLEG00000007289	OTX1 (ENSLLEG00000007304) #14	WDPCP (ENSLLEG00000007365) #16	MDH1 (ENSLLEG00000007707) #17	ENSLLEG00000007978 #18	VPS54 (ENSLLEG00000008019) #19	PELI1 (ENSLLEG00000008444) #20	ENSLLEG00000008486	ENSLLEG00000008502	ENSLLEG00000008521	LGALSL (ENSLLEG00000008554) #21	SYS1 (ENSLLEG00000008712)	AFTPH (ENSLLEG00000008756) #22	SERTAD2 (ENSLLEG00000009029) #23	SLC1A4 (ENSLLEG00000009051) #24	ENSLLEG00000009114 #25	RAB1B (ENSLLEG00000009169)	ACTR2 (ENSLLEG00000009396) #27	ENSLLEG00000009622	SPRED2 (ENSLLEG00000009649) #28	ENSLLEG00000009839	MEIS1 (ENSLLEG00000009890) #30	ENSLLEG00000010259	ENSLLEG00000010276 #31	ENSLLEG00000010364	C1D (ENSLLEG00000010381) #32	DNAAF10 (ENSLLEG00000010419) #33	PNO1 (ENSLLEG00000010509) #34
Frog	MODERN SPECIES	5	b3gnt2 (ENSXETG00000002237) #10	ehbp1 (ENSXETG00000013029) #13	otx1 (ENSXETG00000040503) #14	wdpcp (ENSXETG00000013020) #16	mdh1 (ENSXETG00000013016) #17	ugp2 (ENSXETG00000013007) #18	ENSXETG00000046337	vps54 (ENSXETG00000013000) #19	ENSXETG00000043346	peli1 (ENSXETG00000012997) #20	ENSXETG00000038106	ENSXETG00000044468	lgalsl (ENSXETG00000025808) #21	sys1 (ENSXETG00000047554)	ENSXETG00000036875	aftph (ENSXETG00000014023) #22	sertad2 (ENSXETG00000014022) #23	slc1a4 (ENSXETG00000014014) #24	cep68 (ENSXETG00000031207) #25	rab1a (ENSXETG00000014011)	actr2 (ENSXETG00000014001) #27	spred2 (ENSXETG00000014000) #28	ENSXETG00000044979	meis1 (ENSXETG00000011473) #30	etaa1 (ENSXETG00000025932) #31	c1d (ENSXETG00000025934) #32	dnaaf10 (ENSXETG00000046703) #33	pno1 (ENSXETG00000017349) #34	ppp3r1 (ENSXETG00000017355) #35	cnrip1 (ENSXETG00000035745) #36	plek (ENSXETG00000017358) #37
Coelacanth	MODERN SPECIES	268	ENSLACG00000018195	ENSLACG00000018120 #7	CCT4 (ENSLACG00000018104) #8	COMMD1 (ENSLACG00000017947) #9	B3GNT2 (ENSLACG00000017889) #10	ENSLACG00000017727	EHBP1 (ENSLACG00000017240) #13	OTX1 (ENSLACG00000017220) #14	WDPCP (ENSLACG00000016832) #16	MDH1 (ENSLACG00000016626) #17	UGP2 (ENSLACG00000016454) #18	VPS54 (ENSLACG00000016185) #19	PELI1 (ENSLACG00000015880) #20	ENSLACG00000015557	LGALSL (ENSLACG00000015424) #21	AFTPH (ENSLACG00000015062) #22	SERTAD2 (ENSLACG00000014958) #23	slc1a4 (ENSLACG00000013933) #24	slc1a4 (ENSLACG00000013894) #24	ENSLACG00000013207 #25	RAB1A (ENSLACG00000012869) #26	zgc:153169 (ENSLACG00000012519)	ACTR2 (ENSLACG00000012086) #27	SPRED2 (ENSLACG00000010623) #28
Actinopterygii	ANCESTRAL SPECIES	19	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.b ##20	ENSGT00940000166587	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327.l #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00660000097267	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35
Reedfish	MODERN SPECIES	6	pcsk2 (ENSECRG00000018365)	BFSP1 (ENSECRG00000019405)	ENSECRG00000019440	FAM161A (ENSECRG00000019469) #7	cct4 (ENSECRG00000019511) #8	commd1 (ENSECRG00000019553) #9	b3gnt2a (ENSECRG00000019579) #10	EHBP1 (ENSECRG00000019606) #13	otx1 (ENSECRG00000019648) #14	ENSECRG00000019668 #16	mdh1ab (ENSECRG00000019698) #17	ugp2a (ENSECRG00000019749) #18	vps54 (ENSECRG00000019821) #19	ENSECRG00000019880 ##20	lgalslb (ENSECRG00000019917) #21	aftpha (ENSECRG00000019951) #22	sertad2b (ENSECRG00000019987) #23	ENSECRG00000020001 #25	rab1ab (ENSECRG00000020049)	zgc:153169 (ENSECRG00000020103)	ACTR2 (ENSECRG00000020143) #27	spred2b (ENSECRG00000020195) #28	meis1b (ENSECRG00000020236) #30	ENSECRG00000020320 #31	c1d (ENSECRG00000020336) #32	ints9 (ENSECRG00000020351)	pno1 (ENSECRG00000020369) #34	dnaaf10 (ENSECRG00000020385) #33	USP34 (ENSECRG00000020472)	ENSECRG00000020605	SANBR (ENSECRG00000020613)
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.b ##20	ENSGT00940000166587	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327.l #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284 #36
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	619														ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000154186.a.q #22
Clupeocephala	ANCESTRAL SPECIES	860															ENSGT00940000177700	ENSGT00940000154186.a.q #22
Euteleosteomorpha	ANCESTRAL SPECIES	207	ENSGT00940000158732	ENSGT00390000016883	ENSGT00390000008178	ENSGT00940000153408.B.s.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36
Acanthomorphata	ANCESTRAL SPECIES	114				ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000168989	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j	ENSGT00940000166291	ENSGT00940000163420
Euacanthomorphacea	ANCESTRAL SPECIES	57			ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Percomorphaceae	ANCESTRAL SPECIES	46	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00940000162741	ENSGT00940000164334	ENSGT00400000024746
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l.q #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.a.a.a	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l.q #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291.d	ENSGT00940000163420
NAME_6	ANCESTRAL SPECIES	275	ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.a.a.a	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l.q #30
Sailfin molly	MODERN SPECIES	38					b3gnt2b (ENSPLAG00000019544) #10	EHBP1 (ENSPLAG00000019645) #13	otx1 (ENSPLAG00000019667) #14	ENSPLAG00000019683 #16	MDH1 (ENSPLAG00000019698) #17	ugp2b (ENSPLAG00000019720) #18	peli1b (ENSPLAG00000019732) ##20	ENSPLAG00000019777	lgalslb (ENSPLAG00000019781) #21	ENSPLAG00000019786	ENSPLAG00000019792	ENSPLAG00000019804 #22	actr2a (ENSPLAG00000019837) #27	SPRED2 (ENSPLAG00000019851) #28	MEIS1 (ENSPLAG00000019858) #30
Guppy	MODERN SPECIES	445	ENSPREG00000020614	ENSPREG00000020631	ciao2b (ENSPREG00000020644)	ENSPREG00000020655	ENSPREG00000020793	b3gnt2b (ENSPREG00000021300) #10	EHBP1 (ENSPREG00000021321) #13	otx1 (ENSPREG00000021337) #14	WDPCP (ENSPREG00000021349) #16	MDH1 (ENSPREG00000021368) #17	ugp2b (ENSPREG00000021393) #18	peli1b (ENSPREG00000021412) ##20	ENSPREG00000021444	lgalslb (ENSPREG00000021476) #21	ENSPREG00000021483	ENSPREG00000021487 #22	actr2a (ENSPREG00000000566) #27	SPRED2 (ENSPREG00000000651) #28	meis1b (ENSPREG00000000691) #30	ENSPREG00000000726 #31	c1d (ENSPREG00000000742) #32	dnaaf10 (ENSPREG00000000779) #33	pno1 (ENSPREG00000000793) #34	ppp3r1a (ENSPREG00000000832) #35	cnrip1b (ENSPREG00000000842) #36	KCNQ5 (ENSPREG00000000873)	ddx43 (ENSPREG00000000923)	CGAS (ENSPREG00000001034)	EEF1A1 (ENSPREG00000001416)	slc17a5 (ENSPREG00000001453)	ENSPREG00000001493
Platyfish	MODERN SPECIES	14	ENSXMAG00000005660	ENSXMAG00000005658	ciao2b (ENSXMAG00000005652)	ENSXMAG00000005623	b3gnt2b (ENSXMAG00000019808) #10	EHBP1 (ENSXMAG00000005611) #13	otx1 (ENSXMAG00000005604) #14	WDPCP (ENSXMAG00000005591) #16	MDH1 (ENSXMAG00000005571) #17	ugp2b (ENSXMAG00000005551) #18	ENSXMAG00000027229	peli1b (ENSXMAG00000022686) ##20	lgalslb (ENSXMAG00000011845) #21	ENSXMAG00000029735	ENSXMAG00000025365	ENSXMAG00000029191 #22	actr2a (ENSXMAG00000011813) #27	SPRED2 (ENSXMAG00000011804) #28	ENSXMAG00000029931	meis1b (ENSXMAG00000011739) #30	ENSXMAG00000027599	c1d (ENSXMAG00000022273) #32	dnaaf10 (ENSXMAG00000029168) #33	pno1 (ENSXMAG00000021459) #34	ppp3r1a (ENSXMAG00000022836) #35	cnrip1b (ENSXMAG00000024487) #36	KCNQ5 (ENSXMAG00000024491)	ddx43 (ENSXMAG00000017126)	CGAS (ENSXMAG00000028055)	EEF1A1 (ENSXMAG00000017149)	slc17a5 (ENSXMAG00000017162)
NAME_4	ANCESTRAL SPECIES	132	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Mummichog	MODERN SPECIES	2306	ENSFHEG00000011361	ciao2b (ENSFHEG00000000703)	b3gnt2b (ENSFHEG00000011347) #10	EHBP1 (ENSFHEG00000000256) #13	otx1 (ENSFHEG00000011199) #14	ENSFHEG00000011182 #16	WDPCP (ENSFHEG00000011173) #16	MDH1 (ENSFHEG00000011156) #17	ugp2b (ENSFHEG00000011098) #18	peli1b (ENSFHEG00000011027) ##20	ENSFHEG00000010952	lgalslb (ENSFHEG00000010890) #21	ENSFHEG00000010885	ENSFHEG00000010883	ENSFHEG00000010874	ENSFHEG00000010863 #22	actr2a (ENSFHEG00000010852) #27	ENSFHEG00000010786	SPRED2 (ENSFHEG00000000242) #28	meis1b (ENSFHEG00000010659) #30	ENSFHEG00000010566 #31	c1d (ENSFHEG00000010545) #32	dnaaf10 (ENSFHEG00000010502) #33	pno1 (ENSFHEG00000010487) #34	ppp3r1a (ENSFHEG00000010442) #35	cnrip1b (ENSFHEG00000010430) #36
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Nile tilapia	MODERN SPECIES	4	otx1 (ENSONIG00000035027) #14	WDPCP (ENSONIG00000001271) #16	mdh1aa (ENSONIG00000001264) #17	ugp2b (ENSONIG00000001254) #18	peli1b (ENSONIG00000027571) ##20	ENSONIG00000041039	ENSONIG00000028845	ENSONIG00000039915	ENSONIG00000040742	ENSONIG00000004918	ENSONIG00000039754	ENSONIG00000032553	ENSONIG00000008025	lgalslb (ENSONIG00000001248) #21	ENSONIG00000030341	ENSONIG00000039063 #22	actr2a (ENSONIG00000001245) #27	SPRED2 (ENSONIG00000029966) #28	meis1b (ENSONIG00000001236) #30	ENSONIG00000036908 #31	c1d (ENSONIG00000001233) #32	dnaaf10 (ENSONIG00000001214) #33	pno1 (ENSONIG00000001223) #34	cnrip1b (ENSONIG00000001213) #36	KCNQ5 (ENSONIG00000001209)	ddx43 (ENSONIG00000001195)	CGAS (ENSONIG00000040980)	EEF1A1 (ENSONIG00000035707)	ddx43 (ENSONIG00000040886)	EEF1A1 (ENSONIG00000041189)	slc17a5 (ENSONIG00000001181)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Lyretail cichlid	MODERN SPECIES	295	cdh5 (ENSNBRG00000009513)	ENSNBRG00000009525	tmem41ab (ENSNBRG00000009547)	ENSNBRG00000009564	ciao2b (ENSNBRG00000009588)	ENSNBRG00000009721	b3gnt2b (ENSNBRG00000010244) #10	EHBP1 (ENSNBRG00000010267) #13	otx1 (ENSNBRG00000010309) #14	WDPCP (ENSNBRG00000010324) #16	MDH1 (ENSNBRG00000010369) #17	ugp2b (ENSNBRG00000010404) #18	peli1b (ENSNBRG00000010433) ##20	ENSNBRG00000010455	lgalslb (ENSNBRG00000010508) #21	ENSNBRG00000010532 #22	actr2a (ENSNBRG00000010551) #27	SPRED2 (ENSNBRG00000010593) #28	meis1b (ENSNBRG00000010657) #30	ENSNBRG00000010688 #31	c1d (ENSNBRG00000010704) #32	dnaaf10 (ENSNBRG00000010737) #33	pno1 (ENSNBRG00000010839) #34	ppp3r1a (ENSNBRG00000010865) #35	cnrip1b (ENSNBRG00000010873) #36	ENSNBRG00000010894	ddx43 (ENSNBRG00000010942)	ENSNBRG00000011042	ENSNBRG00000011060	slc17a5 (ENSNBRG00000011078)	MAP4K3 (ENSNBRG00000011204)
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Burton s mouthbrooder	MODERN SPECIES	318	ENSHBUG00000017927	ENSHBUG00000017937	ciao2b (ENSHBUG00000017958)	ENSHBUG00000017992	ENSHBUG00000018008 #7	b3gnt2b (ENSHBUG00000018017) #10	EHBP1 (ENSHBUG00000018080) #13	otx1 (ENSHBUG00000018104) #14	WDPCP (ENSHBUG00000018121) #16	MDH1 (ENSHBUG00000001045) #17	ugp2b (ENSHBUG00000018209) #18	peli1b (ENSHBUG00000018272) ##20	ENSHBUG00000018319	lgalslb (ENSHBUG00000018349) #21	ENSHBUG00000018356	ENSHBUG00000018375 #22	actr2a (ENSHBUG00000018399) #27	SPRED2 (ENSHBUG00000018425) #28	meis1b (ENSHBUG00000018510) #30	ENSHBUG00000018526 #31	c1d (ENSHBUG00000018531) #32	dnaaf10 (ENSHBUG00000018541) #33	pno1 (ENSHBUG00000018572) #34	ppp3r1a (ENSHBUG00000000555) #35	cnrip1b (ENSHBUG00000018590) #36
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Zebra mbuna	MODERN SPECIES	1095	GPR155 (ENSMZEG00005027322)	wipf1a (ENSMZEG00005027323)	ciao2b (ENSMZEG00005027324)	ENSMZEG00005027325	ENSMZEG00005027326 #7	b3gnt2b (ENSMZEG00005027327) #10	EHBP1 (ENSMZEG00005027328) #13	ENSMZEG00005027329	otx1 (ENSMZEG00005027330) #14	WDPCP (ENSMZEG00005027331) #16	MDH1 (ENSMZEG00005027332) #17	ugp2b (ENSMZEG00005027333) #18	peli1b (ENSMZEG00005027334) ##20	ENSMZEG00005027335	lgalslb (ENSMZEG00005027336) #21	ENSMZEG00005027337 #22	actr2a (ENSMZEG00005027338) #27	SPRED2 (ENSMZEG00005027339) #28	meis1b (ENSMZEG00005027341) #30	ENSMZEG00005027342 #31	c1d (ENSMZEG00005027343) #32	dnaaf10 (ENSMZEG00005027344) #33	pno1 (ENSMZEG00005027345) #34	ppp3r1a (ENSMZEG00005027346) #35	cnrip1b (ENSMZEG00005027347) #36	KCNQ5 (ENSMZEG00005027348)	ddx43 (ENSMZEG00005027349)	CGAS (ENSMZEG00005027350)	EEF1A1 (ENSMZEG00005027351)	slc17a5 (ENSMZEG00005027352)	MAP4K3 (ENSMZEG00005027353)
P. nyererei	MODERN SPECIES	349	ENSPNYG00000007119	tmem41ab (ENSPNYG00000007133)	GPR155 (ENSPNYG00000007158)	wipf1a (ENSPNYG00000007173)	ciao2b (ENSPNYG00000007207)	ENSPNYG00000007421	b3gnt2b (ENSPNYG00000008156) #10	EHBP1 (ENSPNYG00000008205) #13	otx1 (ENSPNYG00000008345) #14	ENSPNYG00000008363 #16	MDH1 (ENSPNYG00000008390) #17	ugp2b (ENSPNYG00000008441) #18	peli1b (ENSPNYG00000008495) ##20	ENSPNYG00000008530	lgalslb (ENSPNYG00000008578) #21	ENSPNYG00000008600 #22	actr2a (ENSPNYG00000008624) #27	SPRED2 (ENSPNYG00000008682) #28	meis1b (ENSPNYG00000008708) #30	ENSPNYG00000008745	ENSPNYG00000008771 #31	c1d (ENSPNYG00000008789) #32	dnaaf10 (ENSPNYG00000008828) #33	pno1 (ENSPNYG00000008942) #34	ppp3r1a (ENSPNYG00000008986) #35	cnrip1b (ENSPNYG00000008998) #36	KCNQ5 (ENSPNYG00000009016)	ddx43 (ENSPNYG00000009064)	CGAS (ENSPNYG00000009164)	EEF1A1 (ENSPNYG00000009404)	slc17a5 (ENSPNYG00000009447)
Midas cichlid	MODERN SPECIES	230	GPR155 (ENSACIG00000013555)	ENSACIG00000013460	ciao2b (ENSACIG00000013440)	ENSACIG00000013207	ENSACIG00000013085	ENSACIG00000013066	b3gnt2b (ENSACIG00000013061) #10	EHBP1 (ENSACIG00000013008) #13	otx1 (ENSACIG00000012995) #14	WDPCP (ENSACIG00000012952) #16	MDH1 (ENSACIG00000012929) #17	ugp2b (ENSACIG00000012903) #18	peli1b (ENSACIG00000012890) ##20	ENSACIG00000012854	lgalslb (ENSACIG00000012830) #21	ENSACIG00000012820 #22	actr2a (ENSACIG00000012799) #27	SPRED2 (ENSACIG00000012773) #28	meis1b (ENSACIG00000012745) #30	ENSACIG00000012728 #31	c1d (ENSACIG00000012684) #32	dnaaf10 (ENSACIG00000012570) #33	pno1 (ENSACIG00000012543) #34	ppp3r1a (ENSACIG00000012385) #35	cnrip1b (ENSACIG00000012353) #36	KCNQ5 (ENSACIG00000012311)	ddx43 (ENSACIG00000012170)	CGAS (ENSACIG00000011886)	EEF1A1 (ENSACIG00000011859)	ENSACIG00000011849	slc17a5 (ENSACIG00000011825)
Pomacentridae	ANCESTRAL SPECIES	115										ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01030000235205	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000155483.f
Bicolor damselfish	MODERN SPECIES	2639																ENSSPAG00000011487 #22	actr2a (ENSSPAG00000011440) #27
Pomacentridae_A	ANCESTRAL SPECIES	104												ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000174754	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000155483.f
Amphiprion	ANCESTRAL SPECIES	128												ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000174754	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000155483.f
Clown anemonefish	MODERN SPECIES	2728														lgalslb (ENSAOCG00000010507) #21	ENSAOCG00000010490	ENSAOCG00000010475 #22	actr2a (ENSAOCG00000010461) #27
Orange clownfish	MODERN SPECIES	12	CCDC88A (ENSAPEG00000002147)	ENSAPEG00000002038	ENSAPEG00000001975	ENSAPEG00000001962	SYNPO2L (ENSAPEG00000001955)	MYOZ1 (ENSAPEG00000001946)	hhat (ENSAPEG00000001904)	KCNH1 (ENSAPEG00000001838)	mrpl57 (ENSAPEG00000001827)	ENSAPEG00000001773	ENSAPEG00000001743	peli1b (ENSAPEG00000001720) ##20	ENSAPEG00000001646	lgalslb (ENSAPEG00000001619) #21	ENSAPEG00000001612	ENSAPEG00000001578 #22	actr2a (ENSAPEG00000001530) #27	SPRED2 (ENSAPEG00000001488) #28	meis1b (ENSAPEG00000001438) #30	ENSAPEG00000001417 #31	c1d (ENSAPEG00000001403) #32	dnaaf10 (ENSAPEG00000001394) #33	pno1 (ENSAPEG00000001366) #34	ppp3r1a (ENSAPEG00000001356) #35	cnrip1b (ENSAPEG00000001341) #36	KCNQ5 (ENSAPEG00000001262)	ddx43 (ENSAPEG00000001133)	CGAS (ENSAPEG00000001118)	EEF1A1 (ENSAPEG00000001072)	ENSAPEG00000001056	slc17a5 (ENSAPEG00000001012)
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4502																ENSAPOG00000006466 #22
Spiny chromis	MODERN SPECIES	4501																ENSAPOG00000006478 #22
Spiny chromis	MODERN SPECIES	4530																ENSAPOG00000020655 #22
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00940000162741	ENSGT00910000144211	ENSGT00940000164334
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00940000164334	ENSGT00400000024746	ENSGT00950000183029.B.j.d
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00940000164334	ENSGT00400000024746	ENSGT00950000183029.B.j.d
Ballan wrasse	MODERN SPECIES	123										MDH1 (ENSLBEG00000008750) #17	ugp2b (ENSLBEG00000008705) #18	peli1b (ENSLBEG00000008670) ##20	ENSLBEG00000008607	lgalslb (ENSLBEG00000008580) #21	ENSLBEG00000008560	ENSLBEG00000008542 #22	ACTR2 (ENSLBEG00000008499) #27	SPRED2 (ENSLBEG00000008460) #28	meis1b (ENSLBEG00000008402) #30	ENSLBEG00000008369 #31	c1d (ENSLBEG00000008351) #32	dnaaf10 (ENSLBEG00000008344) #33	pno1 (ENSLBEG00000008305) #34	ppp3r1a (ENSLBEG00000008282) #35	cnrip1b (ENSLBEG00000008256) #36	KCNQ5 (ENSLBEG00000008083)	ddx43 (ENSLBEG00000007913)	EEF1A1 (ENSLBEG00000007846)	slc17a5 (ENSLBEG00000007798)	MAP4K3 (ENSLBEG00000007665)	ENSLBEG00000007585
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00940000164334	ENSGT00400000024746	ENSGT00950000183029.B.j.d
Perciformes	ANCESTRAL SPECIES	17	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01030000235205	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a.h #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT00940000174058	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000163420
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01030000235205	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a.h #28	ENSGT00940000156327.l #30	ENSGT01030000235154	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT01030000237580
Channel bull blenny	MODERN SPECIES	6	ENSCGOG00000018126	ENSCGOG00000018075	ENSCGOG00000018070 #7	b3gnt2b (ENSCGOG00000018067) #10	EHBP1 (ENSCGOG00000018066) #13	otx1 (ENSCGOG00000018063) #14	WDPCP (ENSCGOG00000018045) #16	MDH1 (ENSCGOG00000017586) #17	ENSCGOG00000017565	peli1b (ENSCGOG00000017558) ##20	ENSCGOG00000017525	lgalslb (ENSCGOG00000017523) #21	ENSCGOG00000017519	ENSCGOG00000017517	ENSCGOG00000017515	ENSCGOG00000017511 #22	ACTR2 (ENSCGOG00000017247) #27	SPRED2 (ENSCGOG00000017236) #28	meis1b (ENSCGOG00000014989) #30	c1d (ENSCGOG00000014962) #32	dnaaf10 (ENSCGOG00000014955) #33	pno1 (ENSCGOG00000014929) #34	ppp3r1a (ENSCGOG00000014926) #35	cnrip1b (ENSCGOG00000014921) #36	KCNQ5 (ENSCGOG00000014877)	ddx43 (ENSCGOG00000014781)	CGAS (ENSCGOG00000014721)	EEF1A1 (ENSCGOG00000013428)	slc17a5 (ENSCGOG00000013126)	ENSCGOG00000013110	MAP4K3 (ENSCGOG00000008956)
Pike perch	MODERN SPECIES	30	ciao2b (ENSSLUG00000016626)	ENSSLUG00000016721	b3gnt2b (ENSSLUG00000018228) #10	EHBP1 (ENSSLUG00000018256) #13	otx1 (ENSSLUG00000018349) #14	WDPCP (ENSSLUG00000018353) #16	mdh1aa (ENSSLUG00000018360) #17	ugp2b (ENSSLUG00000005472) #18	peli1b (ENSSLUG00000007153) ##20	ENSSLUG00000007184	lgalslb (ENSSLUG00000007241) #21	ENSSLUG00000007259	ENSSLUG00000007265	ENSSLUG00000007269	ENSSLUG00000007277	ENSSLUG00000007287 #22	ACTR2 (ENSSLUG00000007306) #27	SPRED2 (ENSSLUG00000007558) #28	meis1b (ENSSLUG00000007585) #30	ENSSLUG00000008032	c1d (ENSSLUG00000008045) #32	dnaaf10 (ENSSLUG00000008055) #33	pno1 (ENSSLUG00000008114) #34	sult6b1 (ENSSLUG00000008118)	cnrip1b (ENSSLUG00000008160) #36	KCNQ5 (ENSSLUG00000008175)	ddx43 (ENSSLUG00000008401)	CGAS (ENSSLUG00000008418)	eef1a1b (ENSSLUG00000008428)	slc17a5 (ENSSLUG00000008576)	MAP4K3 (ENSSLUG00000009726)
Eupecaria_C	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q #22
Gilthead seabream	MODERN SPECIES	6	ENSSAUG00010003745	ENSSAUG00010003703 #7	b3gnt2b (ENSSAUG00010003701) #10	EHBP1 (ENSSAUG00010003566) #13	otx1 (ENSSAUG00010003536) #14	WDPCP (ENSSAUG00010003517) #16	mdh1aa (ENSSAUG00010003388) #17	ugp2b (ENSSAUG00010001888) #18	peli1b (ENSSAUG00010001780) ##20	ENSSAUG00010001623	lgalslb (ENSSAUG00010001580) #21	ENSSAUG00010001562	ENSSAUG00010001554	ENSSAUG00010019559	ENSSAUG00010019557	ENSSAUG00010019554 #22	ACTR2 (ENSSAUG00010019253) #27	SPRED2 (ENSSAUG00010019238) #28	meis1b (ENSSAUG00010019201) #30	ENSSAUG00010019192 #31	c1d (ENSSAUG00010019188) #32	pno1 (ENSSAUG00010019182) #34	dnaaf10 (ENSSAUG00010019181) #33	cnrip1b (ENSSAUG00010019175) #36	KCNQ5 (ENSSAUG00010018578)	ddx43 (ENSSAUG00010018572)	CGAS (ENSSAUG00010018571)	EEF1A1 (ENSSAUG00010018560)	slc17a5 (ENSSAUG00010018543)	ENSSAUG00010018537	MAP4K3 (ENSSAUG00010018108)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q #22
Large yellow croaker	MODERN SPECIES	2	ITSN1 (ENSLCRG00005014379)	cryzl1 (ENSLCRG00005017969)	setd4 (ENSLCRG00005018012)	cbr1 (ENSLCRG00005018013)	ENSLCRG00005018014	ENSLCRG00005018016	si:ch1073-126c3.2 (ENSLCRG00005018017)	ENSLCRG00005018018	GFRA1 (ENSLCRG00005018019)	ENSLCRG00005018039	peli1b (ENSLCRG00005018506) ##20	ENSLCRG00005018527	lgalslb (ENSLCRG00005018532) #21	ENSLCRG00005000106	ENSLCRG00005000141	ENSLCRG00005000165 #22	ACTR2 (ENSLCRG00005000189) #27	SPRED2 (ENSLCRG00005000227) #28	meis1b (ENSLCRG00005000371) #30	ENSLCRG00005003502 #31	c1d (ENSLCRG00005003503) #32	dnaaf10 (ENSLCRG00005003504) #33	pno1 (ENSLCRG00005003507) #34	ppp3r1a (ENSLCRG00005003511) #35	cnrip1b (ENSLCRG00005003531) #36	KCNQ5 (ENSLCRG00005003543)	ddx43 (ENSLCRG00005004026)	ENSLCRG00005004073	EEF1A1 (ENSLCRG00005004079)	slc17a5 (ENSLCRG00005004152)	ENSLCRG00005004228
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT01030000237580
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT01030000237580
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000022373	ENSMAMG00000022372	ENSMAMG00000025775	ENSMAMG00000022370	ENSMAMG00000025255	ENSMAMG00000022263	b3gnt2b (ENSMAMG00000022230) #10	EHBP1 (ENSMAMG00000022226) #13	otx1 (ENSMAMG00000022224) #14	WDPCP (ENSMAMG00000022221) #16	MDH1 (ENSMAMG00000022218) #17	ugp2b (ENSMAMG00000022214) #18	peli1b (ENSMAMG00000022208) ##20	ENSMAMG00000022200	LGALSL (ENSMAMG00000022198) #21	AFTPH (ENSMAMG00000022192) #22	actr2b (ENSMAMG00000022188) #27	SPRED2 (ENSMAMG00000025530) #28	MEIS1 (ENSMAMG00000022171) #30	ENSMAMG00000022164 #31	C1D (ENSMAMG00000022156) #32	pno1 (ENSMAMG00000022144) #34	DNAAF10 (ENSMAMG00000022141) #33	ENSMAMG00000022136 #36	KCNQ5 (ENSMAMG00000022134)	ddx43 (ENSMAMG00000022128)	CGAS (ENSMAMG00000022124)	EEF1A1 (ENSMAMG00000004552)	slc17a5 (ENSMAMG00000022121)	ENSMAMG00000022108	ENSMAMG00000022090
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT01030000237580
Siamese fighting fish	MODERN SPECIES	6	tmem41ab (ENSBSLG00000019735)	GPR155 (ENSBSLG00000019629)	ENSBSLG00000019611	ciao2b (ENSBSLG00000019605)	ENSBSLG00000019449	ENSBSLG00000019316 #7	b3gnt2b (ENSBSLG00000019315) #10	EHBP1 (ENSBSLG00000019193) #13	otx1 (ENSBSLG00000019164) #14	WDPCP (ENSBSLG00000019147) #16	MDH1 (ENSBSLG00000019042) #17	ugp2b (ENSBSLG00000018667) #18	peli1b (ENSBSLG00000018653) ##20	ENSBSLG00000018627	lgalslb (ENSBSLG00000018607) #21	ENSBSLG00000018593 #22	actr2a (ENSBSLG00000018376) #27	SPRED2 (ENSBSLG00000018342) #28	meis1b (ENSBSLG00000017627) #30	ENSBSLG00000017560 #31	c1d (ENSBSLG00000017549) #32	dnaaf10 (ENSBSLG00000017449) #33	pno1 (ENSBSLG00000017358) #34	ppp3r1a (ENSBSLG00000017314) #35	ENSBSLG00000017307	cnrip1b (ENSBSLG00000017289) #36	ENSBSLG00000016785	ENSBSLG00000015916	EEF1A1 (ENSBSLG00000015871)	ddx43 (ENSBSLG00000015799)	slc17a5 (ENSBSLG00000015518)
Climbing perch	MODERN SPECIES	6	ENSATEG00000016233	ENSATEG00000016223	ENSATEG00000016209	ENSATEG00000013894	ENSATEG00000013581	b3gnt2b (ENSATEG00000013573) #10	EHBP1 (ENSATEG00000013475) #13	otx1 (ENSATEG00000013437) #14	WDPCP (ENSATEG00000013390) #16	MDH1 (ENSATEG00000013346) #17	ugp2b (ENSATEG00000013298) #18	peli1b (ENSATEG00000013249) ##20	ENSATEG00000013162	LGALSL (ENSATEG00000027905) #21	ENSATEG00000013084	ENSATEG00000028886 #22	ACTR2 (ENSATEG00000013034) #27	SPRED2 (ENSATEG00000013004) #28	MEIS1 (ENSATEG00000012952) #30	ENSATEG00000012939 #31	C1D (ENSATEG00000012922) #32	pno1 (ENSATEG00000012887) #34	DNAAF10 (ENSATEG00000012915) #33	ENSATEG00000027106 #36	KCNQ5 (ENSATEG00000012797)	ddx43 (ENSATEG00000012664)	CGAS (ENSATEG00000012654)	EEF1A1 (ENSATEG00000012623)	slc17a5 (ENSATEG00000012575)	ENSATEG00000012559	ENSATEG00000012370
Carangaria	ANCESTRAL SPECIES	19	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT00940000166594	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.a	ENSGT00940000174058	ENSGT00950000183029.B.j.c.b
Pleuronectoidei	ANCESTRAL SPECIES	60					ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT00940000166594	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT01050000244827.E	ENSGT00950000183029.B.j.c.a	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291
Turbot	MODERN SPECIES	6	chchd1 (ENSSMAG00000034402)	ENSSMAG00000018508	ENSSMAG00000018592	ENSSMAG00000018639	ENSSMAG00000018644	ENSSMAG00000018865	fbxo28 (ENSSMAG00000018869)	degs1 (ENSSMAG00000018894)	nvl (ENSSMAG00000018904)	ENSSMAG00000018945	ENSSMAG00000018949	aprt (ENSSMAG00000018985)	CDT1 (ENSSMAG00000019002)	PIEZO1 (ENSSMAG00000019053)	ctu2 (ENSSMAG00000019141)	ENSSMAG00000032537 #22	actr2b (ENSSMAG00000019164) #27	SPRED2 (ENSSMAG00000019178) #28	MEIS1 (ENSSMAG00000019196) #30	ENSSMAG00000019217 #31	C1D (ENSSMAG00000036865) #32	dnaaf10 (ENSSMAG00000019245) #33	pno1 (ENSSMAG00000019252) #34	cnrip1b (ENSSMAG00000019273) #36	KCNQ5 (ENSSMAG00000019274)	ddx43 (ENSSMAG00000019288)	CGAS (ENSSMAG00000019315)	EEF1A1 (ENSSMAG00000019345)	slc17a5 (ENSSMAG00000019352)	ENSSMAG00000030081	ENSSMAG00000019378
Tongue sole	MODERN SPECIES	3	htra1a (ENSCSEG00000003298)	ENSCSEG00000003302	ENSCSEG00000003306	GRID1 (ENSCSEG00000003314)	ENSCSEG00000003639	ENSCSEG00000003647	ENSCSEG00000003652	fam149b1 (ENSCSEG00000003657)	ENSCSEG00000003678	ecd (ENSCSEG00000003688)	ENSCSEG00000003697	peli1b (ENSCSEG00000003702) ##20	ENSCSEG00000003714	LGALSL (ENSCSEG00000003741) #21	ENSCSEG00000003745	ENSCSEG00000003748 #22	actr2a (ENSCSEG00000003753) #27	SPRED2 (ENSCSEG00000003762) #28	meis1b (ENSCSEG00000003763) #30	six2a (ENSCSEG00000003772)	six3a (ENSCSEG00000003775)	CAMKMT (ENSCSEG00000003780)	prepl (ENSCSEG00000003789)	SLC3A1 (ENSCSEG00000003809)	LRPPRC (ENSCSEG00000003850)	abcg8 (ENSCSEG00000003883)	abcg5 (ENSCSEG00000003890)	dync2li1 (ENSCSEG00000003902)	lyrm7 (ENSCSEG00000003923)	hint1 (ENSCSEG00000003930)	ENSCSEG00000003932
Carangaria_A	ANCESTRAL SPECIES	25			ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #7	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01030000235205	ENSGT00940000166594	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT00940000174058	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00530000063557.b
Seriola	ANCESTRAL SPECIES	17	ENSGT00910000144296	ENSGT00940000167313	ENSGT00390000017697.b	ENSGT00940000155345.q #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b #18	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000166587	ENSGT00940000155337.ab #21	ENSGT01100000263533.b.a.a.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000154556.a.b #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000155933.b.a	ENSGT00940000163653	ENSGT00950000183029.B.j.c.b	ENSGT00940000166291	ENSGT00940000155483.f	ENSGT00530000063557.b
Greater amberjack	MODERN SPECIES	72	ENSSDUG00000020688	ciao2b (ENSSDUG00000020677)	b3gnt2b (ENSSDUG00000020673) #10	EHBP1 (ENSSDUG00000020579) #13	otx1 (ENSSDUG00000020542) #14	WDPCP (ENSSDUG00000020512) #16	mdh1aa (ENSSDUG00000020483) #17	ENSSDUG00000020458	ugp2b (ENSSDUG00000020436) #18	ENSSDUG00000020421 ##20	ENSSDUG00000020392	lgalslb (ENSSDUG00000020375) #21	ENSSDUG00000020372	ENSSDUG00000020365	ENSSDUG00000020354	ENSSDUG00000020338 #22	ACTR2 (ENSSDUG00000020311) #27	SPRED2 (ENSSDUG00000020295) #28	meis1b (ENSSDUG00000020244) #30	ENSSDUG00000020231 #31	c1d (ENSSDUG00000020213) #32	dnaaf10 (ENSSDUG00000020203) #33	pno1 (ENSSDUG00000020189) #34	ppp3r1a (ENSSDUG00000020180) #35	cnrip1b (ENSSDUG00000020172) #36	KCNQ5 (ENSSDUG00000020143)	ddx43 (ENSSDUG00000020120)	CGAS (ENSSDUG00000020107)	ENSSDUG00000020072	EEF1A1 (ENSSDUG00000020050)	slc17a5 (ENSSDUG00000020030)
Yellowtail amberjack	MODERN SPECIES	2948						WDPCP (ENSSLDG00000017711) #16	mdh1aa (ENSSLDG00000017660) #17	ENSSLDG00000017640	ENSSLDG00000017626	ugp2b (ENSSLDG00000017597) #18	peli1b (ENSSLDG00000017579) ##20	ENSSLDG00000017547	lgalslb (ENSSLDG00000017531) #21	ENSSLDG00000017510	ENSSLDG00000017491	ENSSLDG00000017479 #22	ACTR2 (ENSSLDG00000017448) #27	SPRED2 (ENSSLDG00000017425) #28	meis1b (ENSSLDG00000017406) #30	ENSSLDG00000017390 #31	c1d (ENSSLDG00000017371) #32	dnaaf10 (ENSSLDG00000017358) #33	pno1 (ENSSLDG00000017330) #34	ppp3r1a (ENSSLDG00000017313) #35	cnrip1b (ENSSLDG00000017291) #36	KCNQ5 (ENSSLDG00000017263)	ddx43 (ENSSLDG00000017225)	EEF1A1 (ENSSLDG00000017189)	slc17a5 (ENSSLDG00000017146)	MAP4K3 (ENSSLDG00000016855)	ENSSLDG00000016788
Barramundi perch	MODERN SPECIES	33			ENSLCAG00010013366	ENSLCAG00010013374 #7	b3gnt2b (ENSLCAG00010013377) #10	EHBP1 (ENSLCAG00010013383) #13	otx1 (ENSLCAG00010013390) #14	WDPCP (ENSLCAG00010013399) #16	mdh1aa (ENSLCAG00010013412) #17	ugp2b (ENSLCAG00010013444) #18	peli1b (ENSLCAG00010013496) ##20	ENSLCAG00010013511	lgalslb (ENSLCAG00010013522) #21	ENSLCAG00010013527	ENSLCAG00010013530	ENSLCAG00010013537 #22	ACTR2 (ENSLCAG00010013559) #27	SPRED2 (ENSLCAG00010013603) #28	meis1b (ENSLCAG00010013649) #30	ENSLCAG00010014062	c1d (ENSLCAG00010014064) #32	dnaaf10 (ENSLCAG00010014068) #33	pno1 (ENSLCAG00010014077) #34	ppp3r1a (ENSLCAG00010014087) #35	cnrip1b (ENSLCAG00010014096) #36	KCNQ5 (ENSLCAG00010014113)	ddx43 (ENSLCAG00010014225)	ENSLCAG00010014227	EEF1A1 (ENSLCAG00010014256)	slc17a5 (ENSLCAG00010014365)	ENSLCAG00010014405
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005001408	ciao2b (ENSMMDG00005001424)	ENSMMDG00005001501	ENSMMDG00005002044	b3gnt2b (ENSMMDG00005002046) #10	EHBP1 (ENSMMDG00005002064) #13	ENSMMDG00005002101	otx1 (ENSMMDG00005002103) #14	WDPCP (ENSMMDG00005002107) #16	MDH1 (ENSMMDG00005002128) #17	ugp2b (ENSMMDG00005002214) #18	peli1b (ENSMMDG00005004574) ##20	ENSMMDG00005004598	lgalslb (ENSMMDG00005004651) #21	ENSMMDG00005004660	ENSMMDG00005004671 #22	ACTR2 (ENSMMDG00005004705) #27	SPRED2 (ENSMMDG00005005012) #28	meis1b (ENSMMDG00005005050) #30	ENSMMDG00005005164 #31	c1d (ENSMMDG00005005173) #32	dnaaf10 (ENSMMDG00005005183) #33	pno1 (ENSMMDG00005005242) #34	cnrip1b (ENSMMDG00005005245) #36	KCNQ5 (ENSMMDG00005005265)	ddx43 (ENSMMDG00005006480)	CGAS (ENSMMDG00005006487)	EEF1A1 (ENSMMDG00005006490)	slc17a5 (ENSMMDG00005006581)	SRBD1 (ENSMMDG00005007351)	six2a (ENSMMDG00005008747)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q #22
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	29						ENSGT00940000157597.i #13	ENSGT00940000161234.c #14	ENSGT00390000016551.g.b #16	ENSGT00530000063410.a.q.a #17	ENSGT00940000153464.B.z.b.e #18	ENSGT01100000263516.a.b.b.b.b.a.a.b.b.a.a.b.b.a.a	ENSGT00950000183050.b.b.b.a.a.a.a.f ##20	ENSGT00940000166587.a	ENSGT00940000166587.b.a	ENSGT00940000155337.ab.d #21	ENSGT00940000154186.a.q.c #22	ENSGT01050000244843.d.f.b.b.a.a.a	ENSGT00940000157081 #24	ENSGT00940000155080.m	ENSGT00940000165329	ENSGT00950000183136.b.a.a	ENSGT00940000155081.D.u.a	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d.f	ENSGT00940000160608.f
Atlantic salmon	MODERN SPECIES		ENSSSAG00000057531	ENSSSAG00000021967	ENSSSAG00000088767	ENSSSAG00000098410	ENSSSAG00000098224	ENSSSAG00000115891	EHBP1 (ENSSSAG00000084388) #13	WDPCP (ENSSSAG00000120781) #16	MDH1 (ENSSSAG00000052128) #17	ugp2b (ENSSSAG00000082064) #18	ENSSSAG00000088036	peli1b (ENSSSAG00000118555) ##20	ENSSSAG00000001253	ENSSSAG00000103788	LGALSL (ENSSSAG00000083428) #21	ENSSSAG00000098259 #22	ENSSSAG00000061071	ENSSSAG00000119645	ENSSSAG00000087311	ENSSSAG00000001213	ENSSSAG00000096529	ENSSSAG00000090377	ENSSSAG00000047198 #24	PHF3 (ENSSSAG00000047183)	ENSSSAG00000043941	zgc:171579 (ENSSSAG00000097883)	zgc:171579 (ENSSSAG00000084682)	ENSSSAG00000087538	ENSSSAG00000040815	ADGRB3 (ENSSSAG00000040332)	lmbrd1 (ENSSSAG00000086900)
River trout	MODERN SPECIES	35	SANBR (ENSSTUG00000021904)	XPO1 (ENSSTUG00000022024)	ENSSTUG00000022278	ENSSTUG00000022286	b3gnt2b (ENSSTUG00000022297) #10	otx1 (ENSSTUG00000022321) #14	otx1 (ENSSTUG00000022333) #14	ENSSTUG00000017983 #16	ENSSTUG00000017988	MDH1 (ENSSTUG00000018007) #17	ugp2b (ENSSTUG00000018287) #18	ENSSTUG00000019710	peli1b (ENSSTUG00000019729) ##20	ENSSTUG00000019856	lgalslb (ENSSTUG00000020161) #21	ENSSTUG00000020168 #22	ENSSTUG00000020208	slc1a4 (ENSSTUG00000020308) #24	ENSSTUG00000020382	ENSSTUG00000020427	zgc:171579 (ENSSTUG00000020488)	ADGRB3 (ENSSTUG00000020495)	lmbrd1 (ENSSTUG00000020610)	ENSSTUG00000021172	ENSSTUG00000021177	ENSSTUG00000021183	fam135a (ENSSTUG00000021273)	zgc:172136 (ENSSTUG00000021787)	ENSSTUG00000021842	ENSSTUG00000021915	ENSSTUG00000021926
Salmo	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q.d #22
River trout	MODERN SPECIES	9	pex13 (ENSSTUG00000018324)	SANBR (ENSSTUG00000018341)	XPO1 (ENSSTUG00000018409)	ENSSTUG00000018565	ENSSTUG00000018570	ENSSTUG00000018582	MDH1 (ENSSTUG00000018603) #17	ugp2b (ENSSTUG00000018863) #18	ENSSTUG00000019490	ENSSTUG00000019497	peli1b (ENSSTUG00000019507) ##20	ENSSTUG00000019570	ENSSTUG00000019682	lgalslb (ENSSTUG00000019685) #21	ENSSTUG00000019694	ENSSTUG00000019701 #22	ENSSTUG00000019718	ENSSTUG00000019746	slc1a4 (ENSSTUG00000019819) #24	ENSSTUG00000019864	ENSSTUG00000019910	zgc:171579 (ENSSTUG00000019995)	ADGRB3 (ENSSTUG00000020006)	lmbrd1 (ENSSTUG00000020101)	ENSSTUG00000021030	col9a1b (ENSSTUG00000021035)	fam135a (ENSSTUG00000021088)	zgc:172136 (ENSSTUG00000021444)	ENSSTUG00000021467	ENSSTUG00000021549	ENSSTUG00000021589
Otomorpha	ANCESTRAL SPECIES	10	ENSGT00940000157885 #37	ENSGT00390000004284.e #36	ENSGT00940000156530.c.`b.b #35	ENSGT00390000018052 #34	ENSGT00950000183091.A.b #33	ENSGT00390000015405 #32	ENSGT00390000009597.c #31	ENSGT00940000156327.l #30	ENSGT00940000156841.b #28	ENSGT00940000154556.c.b #27	ENSGT00810000125473.A #25	ENSGT00940000157081 #24	ENSGT00530000063867.b.b #23	ENSGT00940000155337.ab #21	ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.r #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t	ENSGT00390000008178	ENSGT00390000016883	ENSGT00940000158732	ENSGT00940000156467	ENSGT00940000156983.a.a.r
Clupeiformes	ANCESTRAL SPECIES	8	ENSGT00940000166657	ENSGT00940000157885 #37	ENSGT00390000004284.e #36	ENSGT00950000183091.A.b.m #33	ENSGT00390000018052 #34	ENSGT00950000183091.A.b.n #33	ENSGT00390000015405 #32	ENSGT00390000009597.c #31	ENSGT00940000156327.l #30	ENSGT00940000156841.b #28	ENSGT00940000154556.c.b #27	ENSGT00810000125473.A #25	ENSGT00940000157081 #24	ENSGT00530000063867.b.b #23	ENSGT00940000155337.ab #21	ENSGT00940000154186.a.q #22	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.r #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t	ENSGT00390000008178	ENSGT00390000016883	ENSGT00940000158732	ENSGT00940000156467	ENSGT00940000156983.a.a.r
Denticle herring	MODERN SPECIES	18	prokr1b (ENSDCDG00000032711)	plek (ENSDCDG00000032714) #37	cnrip1b (ENSDCDG00000032715) #36	dnaaf10 (ENSDCDG00000032721) #33	c1d (ENSDCDG00000032727) #32	ENSDCDG00000032730 #31	meis1a (ENSDCDG00000032751) #30	spred2b (ENSDCDG00000032821) #28	actr2b (ENSDCDG00000032825) #27	zgc:153169 (ENSDCDG00000032906)	rab1ab (ENSDCDG00000032925)	cep68 (ENSDCDG00000032975) #25	slc1a4 (ENSDCDG00000013999) #24	sertad2b (ENSDCDG00000014115) #23	lgalslb (ENSDCDG00000014126) #21	ENSDCDG00000014146 #22	ENSDCDG00000014166	ENSDCDG00000014232	peli1b (ENSDCDG00000014302) ##20	ugp2b (ENSDCDG00000014366) #18	ENSDCDG00000015051	mdh1ab (ENSDCDG00000015055) #17	WDPCP (ENSDCDG00000015075) #16	otx1 (ENSDCDG00000015687) #14	EHBP1 (ENSDCDG00000015700) #13	b3gnt2b (ENSDCDG00000015811) #10	ENSDCDG00000015816 #7	XPO1 (ENSDCDG00000015851)	SANBR (ENSDCDG00000015943)	pex13 (ENSDCDG00000016023)	rel (ENSDCDG00000016031)
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000017244	ENSCHAG00000017260	vox (ENSCHAG00000017267)	ENSCHAG00000017282	ENSCHAG00000017294	plek (ENSCHAG00000017624) #37	ENSCHAG00000017647	meis1b (ENSCHAG00000017672) #30	spred2b (ENSCHAG00000018338) #28	pno1 (ENSCHAG00000018350) #34	dnaaf10 (ENSCHAG00000018360) #33	c1d (ENSCHAG00000018513) #32	slc1a4 (ENSCHAG00000018548) #24	sertad2b (ENSCHAG00000018647) #23	lgalslb (ENSCHAG00000018658) #21	ENSCHAG00000018678 #22	ENSCHAG00000018667	ENSCHAG00000018691	peli1b (ENSCHAG00000018837) ##20	ugp2b (ENSCHAG00000018928) #18	ENSCHAG00000019202	ENSCHAG00000000462	mdh1ab (ENSCHAG00000000940) #17	WDPCP (ENSCHAG00000001434) #16	otx1 (ENSCHAG00000001784) #14	EHBP1 (ENSCHAG00000001812) #13	b3gnt2b (ENSCHAG00000002172) #10	b3gnt2b (ENSCHAG00000002175) #10	ENSCHAG00000002206	XPO1 (ENSCHAG00000002294)	SANBR (ENSCHAG00000003275)
Otophysi	ANCESTRAL SPECIES	541															ENSGT00940000177700	ENSGT00940000154186.a.q #22	ENSGT00940000174754
Cyprinoidei	ANCESTRAL SPECIES	76										ENSGT00390000006218	ENSGT00390000010799	ENSGT00940000165091.d.c	ENSGT00390000002053	ENSGT00940000154531	ENSGT00950000183034.B	ENSGT00940000154186.a.q #22	ENSGT00940000174754	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.r #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t.d.a	ENSGT00390000008178	ENSGT00390000016883	ENSGT00390000017746	ENSGT00940000157593
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	40	ENSGT00390000004254.i	ENSGT00940000154524.b.f	ENSGT00950000183092.b.b.c	ENSGT00950000183215.c.b.j	ENSGT00940000155187.A.b	ENSGT00940000164027.d	ENSGT00940000175997	ENSGT00940000163420.f	ENSGT00940000155483.f.nb.a.b	ENSGT00530000063557.b.l	ENSGT00390000006218.j	ENSGT00390000010799.l	ENSGT00940000165091.d.c.b	ENSGT00390000002053.c	ENSGT00950000183034.B.m	ENSGT00940000154186.a.q.e #22	ENSGT00940000166587.d	ENSGT00950000183050.b.b.b.a.a.a.a.b ##20	ENSGT00940000153464.B.z.b.h #18	ENSGT00530000063410.a.r.c.a #17	ENSGT00390000016551.j.a #16	ENSGT00390000016551.j.b #16	ENSGT00940000161234.a #14	ENSGT00940000157597.e.a.b #13	ENSGT00940000155345.q.c #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t.d.a.b	ENSGT00390000008178.l	ENSGT00390000016883.k	ENSGT00390000017746.g	ENSGT00940000157593.a
Goldfish	MODERN SPECIES	2567	zbtb8a (ENSCARG00000051153)	hmgcl (ENSCARG00000051105)	gjb3 (ENSCARG00000051089)	wdr43 (ENSCARG00000050962)	spdya (ENSCARG00000050938)	STAC (ENSCARG00000050918)	mtfr1l (ENSCARG00000050893)	ENSCARG00000050842	ENSCARG00000050825	ENSCARG00000050808	ENSCARG00000044146	rpl13a (ENSCARG00000043559)	atp5if1b (ENSCARG00000043525)	zmpste24 (ENSCARG00000043291)	RLF (ENSCARG00000043237)	ENSCARG00000043167 #22	ENSCARG00000043022	peli1b (ENSCARG00000042998) ##20	ugp2b (ENSCARG00000042727) #18	mdh1ab (ENSCARG00000042343) #17	WDPCP (ENSCARG00000042289) #16
Cyprininae_a	ANCESTRAL SPECIES	58	ENSGT00940000154524.b.f	ENSGT00950000183092.b.b.c	ENSGT00950000183215.c.b.j	ENSGT00940000181185	ENSGT00940000155187.A.b	ENSGT00940000164027.d	ENSGT00940000175997	ENSGT00940000163420.f	ENSGT00940000155483.f.nb.a.b	ENSGT00530000063557.b.l	ENSGT00390000006218.j	ENSGT00390000010799.l	ENSGT00390000002053.c	ENSGT00940000154531.vc.b	ENSGT00950000183034.B.m	ENSGT00940000154186.a.q.e #22	ENSGT00940000166587.d	ENSGT00950000183050.b.b.b.a.a.a.a.b ##20	ENSGT00940000153464.B.z.b.h #18	ENSGT00530000063410.a.r.c.a #17
Common carp reference	MODERN SPECIES	4	spdya (ENSCCRG00000019164)	ENSCCRG00000074590	mtfr1l (ENSCCRG00000033506)	ENSCCRG00000049661	ENSCCRG00000065602	selenon (ENSCCRG00000006950)	ENSCCRG00000034354	ENSCCRG00000033627	ENSCCRG00000033647	ENSCCRG00000034259	commd9 (ENSCCRG00000034261)	rpl13a (ENSCCRG00000034266)	ENSCCRG00000034282	zmpste24 (ENSCCRG00000065255)	ENSCCRG00000058947	ENSCCRG00000013697 #22	ENSCCRG00000013690	peli1b (ENSCCRG00000024542) ##20	ugp2b (ENSCCRG00000024567) #18	mdh1ab (ENSCCRG00000056932) #17	otx1 (ENSCCRG00000063935) #14	ENSCCRG00000073238	EHBP1 (ENSCCRG00000072862) #13	ENSCCRG00000061352 #7	b3gnt2b (ENSCCRG00000082775) #10	ENSCCRG00000073128	ENSCCRG00000003107	ENSCCRG00000002941	pex13 (ENSCCRG00000003017)	ENSCCRG00000027247	slc18a2 (ENSCCRG00000027262)
Golden-line barbel	MODERN SPECIES	3	gjb3 (ENSSGRG00000029601)	gjb10 (ENSSGRG00000029603)	wdr43 (ENSSGRG00000029605)	trmt61b (ENSSGRG00000029857)	spdya (ENSSGRG00000029858)	mtfr1l (ENSSGRG00000029861)	ENSSGRG00000029862	ENSSGRG00000029867	ENSSGRG00000029868	ENSSGRG00000029869	commd9 (ENSSGRG00000029871)	zmpste24 (ENSSGRG00000029872)	ENSSGRG00000029966	ENSSGRG00000029967	ENSSGRG00000029969	ENSSGRG00000029970 #22	ENSSGRG00000029971	peli1b (ENSSGRG00000029972) ##20	ugp2b (ENSSGRG00000029976) #18	ENSSGRG00000030693 #16
Cyprininae	ANCESTRAL SPECIES	351	ENSGT00950000183215.c.b.i	ENSGT00940000181185	ENSGT00940000155187.A.a	ENSGT00940000164027.c	ENSGT00390000004173	ENSGT00390000006619	ENSGT00940000163420.e	ENSGT00940000155483.f.nb.a.a	ENSGT00530000063557.b.k	ENSGT00390000006218.i	ENSGT00390000010799.k	ENSGT00940000165091.d.c.a	ENSGT00390000002053.d	ENSGT00940000154531.vc.b	ENSGT00950000183034.B.n	ENSGT00940000154186.a.q.f #22	ENSGT00940000166587.c	ENSGT00950000183050.b.b.b.a.a.a.a.a ##20	ENSGT00940000153464.B.z.b.g #18	ENSGT00530000063410.a.r.c.b #17
Goldfish	MODERN SPECIES	8	mtfr1l (ENSCARG00000024225)	ENSCARG00000024218	selenon (ENSCARG00000024155)	znf593 (ENSCARG00000024136)	ENSCARG00000024126	ENSCARG00000024116	ENSCARG00000019480	ENSCARG00000019318	commd9 (ENSCARG00000019311)	rpl13a (ENSCARG00000019293)	atp5if1b (ENSCARG00000019283)	zmpste24 (ENSCARG00000019269)	DYNLT1 (ENSCARG00000019246)	ENSCARG00000019232	ENSCARG00000019222	ENSCARG00000019214 #22	ENSCARG00000019178	peli1b (ENSCARG00000019169) ##20	ugp2b (ENSCARG00000069287) #18	mdh1ab (ENSCARG00000069245) #17	WDPCP (ENSCARG00000069226) #16	otx1 (ENSCARG00000069219) #14	ENSCARG00000069218	ENSCARG00000069212	eml1 (ENSCARG00000069101)	ENSCARG00000069059	degs2 (ENSCARG00000069051)	yy1a (ENSCARG00000069043)	tpp1 (ENSCARG00000068849)	GDF7 (ENSCARG00000068808)	ldah (ENSCARG00000068798)
Cyprininae_a	ANCESTRAL SPECIES	35	ENSGT01060000253468	ENSGT00950000183092.b.b.d	ENSGT00950000183215.c.b.i	ENSGT00940000155187.A.a	ENSGT00940000164027.c	ENSGT00390000004173	ENSGT00390000006619	ENSGT00940000163420.e	ENSGT00940000155483.f.nb.a.a	ENSGT00530000063557.b.k	ENSGT00390000006218.i	ENSGT00390000010799.k	ENSGT00940000165091.d.c.a	ENSGT00390000002053.d	ENSGT00950000183034.B.n	ENSGT00940000154186.a.q.f #22	ENSGT00940000166587.c	ENSGT00950000183050.b.b.b.a.a.a.a.a ##20	ENSGT00940000153464.B.z.b.g #18	ENSGT00530000063410.a.r.c.b #17	ENSGT00390000016551.j.a #16	ENSGT00390000016551.j.b #16	ENSGT00940000161234.a #14	ENSGT00940000157597.e.a.b #13	ENSGT00940000155345.q.c #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t.d.a.b	ENSGT00390000008178.l	ENSGT00390000016883.k	ENSGT00390000017746.g	ENSGT00940000157593.a
Golden-line barbel	MODERN SPECIES	53	STAC (ENSSGRG00000013581)	mtfr1l (ENSSGRG00000013578)	ENSSGRG00000013576	ENSSGRG00000013575	selenon (ENSSGRG00000013573)	znf593 (ENSSGRG00000013572)	morn2 (ENSSGRG00000013571)	ENSSGRG00000013570	MAP4K3 (ENSSGRG00000010116)	ENSSGRG00000010077	commd9 (ENSSGRG00000010076)	rpl13a (ENSSGRG00000010044)	atp5if1b (ENSSGRG00000010042)	DYNLT1 (ENSSGRG00000010041)	RLF (ENSSGRG00000009969)	ENSSGRG00000009968 #22	ENSSGRG00000009966	peli1b (ENSSGRG00000009965) ##20	ugp2b (ENSSGRG00000009223) #18	mdh1ab (ENSSGRG00000009100) #17	ENSSGRG00000009096 #16	otx1 (ENSSGRG00000009093) #14	EHBP1 (ENSSGRG00000009079) #13	b3gnt2b (ENSSGRG00000009076) #10	ENSSGRG00000009075 #7	XPO1 (ENSSGRG00000008167)	SANBR (ENSSGRG00000008070)	pex13 (ENSSGRG00000008068)	PDZD8 (ENSSGRG00000008067)	slc18a2 (ENSSGRG00000008065)	kcnk18 (ENSSGRG00000008063)
Common carp reference	MODERN SPECIES	30	ENSCCRG00000067202	ENSCCRG00000070104	ENSCCRG00000063936	mtfr1l (ENSCCRG00000070238)	ENSCCRG00000058106	selenon (ENSCCRG00000034330)	ENSCCRG00000076662	znf593 (ENSCCRG00000064674)	ENSCCRG00000034639	ENSCCRG00000049249	commd9 (ENSCCRG00000049251)	rpl13a (ENSCCRG00000031859)	atp5if1b (ENSCCRG00000049269)	zmpste24 (ENSCCRG00000057683)	ENSCCRG00000058941	ENSCCRG00000049285 #22	ENSCCRG00000018709	peli1b (ENSCCRG00000018790) ##20	ugp2b (ENSCCRG00000018829) #18	mdh1ab (ENSCCRG00000026888) #17	WDPCP (ENSCCRG00000024549) #16	otx1 (ENSCCRG00000067814) #14	EHBP1 (ENSCCRG00000022494) #13	b3gnt2b (ENSCCRG00000053079) #10	ENSCCRG00000003438	ENSCCRG00000003451 #7	ENSCCRG00000055884	ENSCCRG00000057670	PDZD8 (ENSCCRG00000013188)	slc18a2 (ENSCCRG00000013071)	kcnk18 (ENSCCRG00000013054)
Zebrafish	MODERN SPECIES	8	ENSDARG00000097385	ENSDARG00000063511	selenon (ENSDARG00000033616)	znf593 (ENSDARG00000044102)	morn2 (ENSDARG00000071360)	ENSDARG00000097964	MAP4K3 (ENSDARG00000071357)	ENSDARG00000093070	commd9 (ENSDARG00000094258)	rpl13a (ENSDARG00000044093)	atp5if1b (ENSDARG00000044092)	zmpste24 (ENSDARG00000044090)	DYNLT1 (ENSDARG00000094627)	ENSDARG00000063553	ENSDARG00000116881	ENSDARG00000071347 #22	ENSDARG00000071341	peli1b (ENSDARG00000044083) ##20	ugp2b (ENSDARG00000008200) #18	mdh1ab (ENSDARG00000103849) #17	WDPCP (ENSDARG00000074590) #16	otx1 (ENSDARG00000094992) #14	EHBP1 (ENSDARG00000043643) #13	b3gnt2b (ENSDARG00000091902) #10	ENSDARG00000086305	ENSDARG00000097418	XPO1 (ENSDARG00000063229)	SANBR (ENSDARG00000079857)	pex13 (ENSDARG00000071037)	PDZD8 (ENSDARG00000088699)	slc18a2 (ENSDARG00000015110)
Characiphysae	DUPLICATION
Characiphysae	ANCESTRAL SPECIES	54	ENSGT00940000164766	ENSGT00940000155921	ENSGT00390000002053	ENSGT00940000165091.d.c	ENSGT00390000010799	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000156416.d	ENSGT00390000014563.a.a.b	ENSGT00940000156276	ENSGT00940000155109.a.a	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000177700	ENSGT00940000154186.a.q.g #22	ENSGT00940000174754	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.q.a #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t.d.a	ENSGT00390000008178	ENSGT00390000016883	ENSGT00390000017746	ENSGT00940000157593
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	53	ENSGT00940000164766	ENSGT00940000155921	ENSGT00390000002053	ENSGT00940000165091.d.c	ENSGT00390000010799	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000156416.d	ENSGT00390000014563.a.a.b	ENSGT00940000156276	ENSGT00940000155109.a.a	ENSGT00940000160793	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000177700	ENSGT00940000154186.a.q.g.a #22	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.q.a #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000153408.B.t.d.a	ENSGT00390000008178	ENSGT00390000016883	ENSGT00390000017746	ENSGT00940000157593	ENSGT00700000104522
Characoidei	ANCESTRAL SPECIES	149	ENSGT00940000164766	ENSGT00940000155921	ENSGT00390000002053	ENSGT00940000165091.d.c	ENSGT00390000010799	ENSGT01010000222287.B.b.a.b.a	ENSGT00940000156416.d	ENSGT00390000014563.a.a.b	ENSGT00940000156276	ENSGT00940000155109.a.a	ENSGT00940000160793	ENSGT00940000157776.d	ENSGT01100000263540.A.a	ENSGT00390000018613.a	ENSGT00950000183148.b.b	ENSGT00940000154186.a.q.g.a #22	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##20	ENSGT00940000153464.B.z.b #18	ENSGT00530000063410.a.q.a #17	ENSGT00390000016551 #16	ENSGT00940000161234 #14	ENSGT00940000157597 #13	ENSGT00940000155345.q #10	ENSGT00940000157824.i.b #7	ENSGT00940000166409	ENSGT00940000154551.b.s	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152
Red-bellied piranha	MODERN SPECIES	105	ENSPNAG00000004132	ccdc6a (ENSPNAG00000026830)	slc16a9a (ENSPNAG00000026785)	ENSPNAG00000026778	phyhipla (ENSPNAG00000007149)	BICC1 (ENSPNAG00000026738)	ube2d1a (ENSPNAG00000004925)	vsx1 (ENSPNAG00000005509)	ENSPNAG00000026538	entpd6 (ENSPNAG00000026516)	ENSPNAG00000026487	pygb (ENSPNAG00000006316)	ENSPNAG00000026332	ENSPNAG00000026303	ENSPNAG00000026287	ENSPNAG00000004038 #22	ENSPNAG00000026253	peli1b (ENSPNAG00000005864) ##20	ugp2b (ENSPNAG00000026069) #18	MDH1 (ENSPNAG00000006004) #17	WDPCP (ENSPNAG00000025965) #16	otx1 (ENSPNAG00000025936) #14	EHBP1 (ENSPNAG00000025894) #13	b3gnt2b (ENSPNAG00000025601) #10	ENSPNAG00000025594	abhd12 (ENSPNAG00000025576)	hspa12a (ENSPNAG00000025546)	shtn1 (ENSPNAG00000025377)	atp6v1ba (ENSPNAG00000025256)	vax1 (ENSPNAG00000025156)	ENSPNAG00000025100
Mexicana tetra	MODERN SPECIES	24	zmpste24 (ENSAMXG00000011314)	ENSAMXG00000044108	rpl13a (ENSAMXG00000033532)	ENSAMXG00000025418	ccdc6a (ENSAMXG00000039127)	slc16a9a (ENSAMXG00000037633)	ENSAMXG00000036384	ENSAMXG00000039779	phyhipla (ENSAMXG00000042049)	BICC1 (ENSAMXG00000011396)	ube2d1a (ENSAMXG00000036160)	ENSAMXG00000011442	entpd6 (ENSAMXG00000042365)	ENSAMXG00000011458	pygb (ENSAMXG00000011468)	ENSAMXG00000030790 #22	ENSAMXG00000031371	peli1b (ENSAMXG00000011500) ##20	ugp2b (ENSAMXG00000011506) #18	mdh1aa (ENSAMXG00000040846) #17	ENSAMXG00000043843 #16	otx1 (ENSAMXG00000011543) #14	ENSAMXG00000029465 #13	ENSAMXG00000037682	b3gnt2b (ENSAMXG00000025419) #10	ENSAMXG00000029062 #7	abhd12 (ENSAMXG00000043906)	hspa12a (ENSAMXG00000011627)	eno4 (ENSAMXG00000011630)	shtn1 (ENSAMXG00000011638)	atp6v1ba (ENSAMXG00000011653)
Electric eel	MODERN SPECIES	291									ube2d1a (ENSEEEG00000005771)	ENSEEEG00000005754	vsx1 (ENSEEEG00000005752)	entpd6 (ENSEEEG00000005751)	ENSEEEG00000005749	pygb (ENSEEEG00000005688)	ENSEEEG00000005676	ENSEEEG00000005675 #22	ENSEEEG00000005673	peli1b (ENSEEEG00000005670) ##20	ugp2b (ENSEEEG00000005505) #18	MDH1 (ENSEEEG00000005124) #17	ENSEEEG00000005103 #16	otx1 (ENSEEEG00000005101) #14	ENSEEEG00000005100	EHBP1 (ENSEEEG00000005099) #13	b3gnt2b (ENSEEEG00000005098) #10	XPO1 (ENSEEEG00000005037)	SANBR (ENSEEEG00000005004)	pex13 (ENSEEEG00000004983)	PDZD8 (ENSEEEG00000004979)
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q.g.b #22
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q.g.b #22
Mexicana tetra	MODERN SPECIES	1377															ENSAMXG00000032133	ENSAMXG00000030200 #22
Channel catfish	MODERN SPECIES	28	rpl13a (ENSIPUG00000014098)	ENSIPUG00000014092	ccdc6a (ENSIPUG00000014052)	slc16a9a (ENSIPUG00000014014)	ENSIPUG00000013975	phyhipla (ENSIPUG00000013956)	ENSIPUG00000013947	ENSIPUG00000013942	ube2d1a (ENSIPUG00000013898)	ENSIPUG00000013889	vsx1 (ENSIPUG00000013858)	ENTPD6 (ENSIPUG00000013815)	ENSIPUG00000013756	pygb (ENSIPUG00000013662)	ENSIPUG00000013655	ENSIPUG00000013628 #22	abcG20 (ENSIPUG00000013458)	peli1b (ENSIPUG00000013383) ##20	UGP2 (ENSIPUG00000013211) #18	MDH1 (ENSIPUG00000013164) #17	WDPCP (ENSIPUG00000013126) #16	otx1 (ENSIPUG00000013113) #14	EHBP1 (ENSIPUG00000013044) #13	b3gnt2b (ENSIPUG00000013024) #10	Xpo1 (ENSIPUG00000012891)	kiaa1841 (ENSIPUG00000012801)	pex13 (ENSIPUG00000012783)	pdzd8 (ENSIPUG00000012766)	slc18a2 (ENSIPUG00000012691)	kcnk18 (ENSIPUG00000012673)	ENSIPUG00000012647
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q.h #22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00940000154186.a.q.h #22
Electric eel	MODERN SPECIES	932									ENSEEEG00000005279	ENSEEEG00000005278	zgc:136864 (ENSEEEG00000005276)	vps54 (ENSEEEG00000005024) #19	ENSEEEG00000005016 ##20	lgalsla (ENSEEEG00000005014) #21	ENSEEEG00000005013	ENSEEEG00000005011 #22	ENSEEEG00000005010	rab1aa (ENSEEEG00000004849)	mb (ENSEEEG00000004841)	pane1 (ENSEEEG00000004839)	zgc:158803 (ENSEEEG00000004837)	mri1 (ENSEEEG00000004835)
Osteoglossiformes	ANCESTRAL SPECIES	115	ENSGT00940000157361.b	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a.i	ENSGT00940000156467.n	ENSGT00940000158732.l	ENSGT00390000016883	ENSGT00390000008178	ENSGT00940000155345.o #10	ENSGT00940000157597 #13	ENSGT00940000161234.e #14	ENSGT00390000016551 #16	ENSGT00950000183050.b.b.b.a.a.b.b ##20	ENSGT00940000166587	ENSGT00940000155337.`b.b #21	ENSGT00940000154186.a.q #22	ENSGT00530000063867.b #23	ENSGT00940000157081.h #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.e.b #27	ENSGT00940000154556.e.a #27	ENSGT00940000156841.b #28	ENSGT00940000156327.l #30	ENSGT00390000009597 #31	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00940000157885.j #37	ENSGT00390000012248	ENSGT00390000010591
Asian bonytongue	MODERN SPECIES	19	bcl11aa (ENSSFOG00015026685)	papolg (ENSSFOG00015011874)	rel (ENSSFOG00015011855)	pex13 (ENSSFOG00015026130)	SANBR (ENSSFOG00015011799)	ENSSFOG00015011598	B3GNT2 (ENSSFOG00015024343) #10	EHBP1 (ENSSFOG00015011508) #13	otx1 (ENSSFOG00015011487) #14	WDPCP (ENSSFOG00015027973) #16	MDH1 (ENSSFOG00015011431) #17	ugp2a (ENSSFOG00015011405) #18	ENSSFOG00015032922 ##20	ENSSFOG00015011260	lgalsla (ENSSFOG00015028463) #21	ENSSFOG00015027086 #22	ENSSFOG00015011233	ENSSFOG00015028900 #23	SLC1A4 (ENSSFOG00015011220) #24	cep68 (ENSSFOG00015028803) #25	ENSSFOG00015032633	zgc:153169 (ENSSFOG00015011091)	ACTR2 (ENSSFOG00015011048) #27	SPRED2 (ENSSFOG00015032832) #28	ENSSFOG00015010893 #30	c1d (ENSSFOG00015010861) #32	dnaaf10 (ENSSFOG00015010775) #33	plek (ENSSFOG00015010711) #37	cnrip1a (ENSSFOG00015010755) #36	prokr1b (ENSSFOG00015010694)	BFSP1 (ENSSFOG00015010667)
P. kingsleyae	MODERN SPECIES	11	papolg (ENSPKIG00000003313)	ENSPKIG00000003400	pex13 (ENSPKIG00000003409)	SANBR (ENSPKIG00000003437)	ENSPKIG00000003545	ENSPKIG00000003715	B3GNT2 (ENSPKIG00000003847) #10	EHBP1 (ENSPKIG00000004032) #13	otx1 (ENSPKIG00000004281) #14	WDPCP (ENSPKIG00000004302) #16	mdh1ab (ENSPKIG00000004347) #17	ugp2b (ENSPKIG00000004404) #18	ENSPKIG00000004483 ##20	ENSPKIG00000004509	LGALSL (ENSPKIG00000004562) #21	ENSPKIG00000004596 #22	ENSPKIG00000004619 #23	slc1a4 (ENSPKIG00000004639) #24	cep68 (ENSPKIG00000004675) #25	rab1ab (ENSPKIG00000004714)	zgc:153169 (ENSPKIG00000004744)	ACTR2 (ENSPKIG00000004770) #27	SPRED2 (ENSPKIG00000004810) #28	ENSPKIG00000004852	c1d (ENSPKIG00000004877) #32	dnaaf10 (ENSPKIG00000004908) #33	ENSPKIG00000004958 #35	cnrip1a (ENSPKIG00000005004) #36	plek (ENSPKIG00000005025) #37	prokr1b (ENSPKIG00000005050)	ENSPKIG00000005067
Osteoglossocephalai	ANCESTRAL SPECIES	39	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00940000178862	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345 #10	ENSGT00940000157597 #13	ENSGT00940000161234 #14	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284 #36
Clupeocephala	ANCESTRAL SPECIES	37	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000155078.a.b.a.a	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000155078.a.b.a.b	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841.a.a #28	ENSGT00940000156327.l #30	ENSGT00390000009597.c #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #33	ENSGT00390000018052 #34	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.e #36	ENSGT00940000157885 #37	ENSGT00940000166657	ENSGT00390000016976	ENSGT00940000156965
Euteleosteomorpha	ANCESTRAL SPECIES	18	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958 #26	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a
Acanthomorphata	ANCESTRAL SPECIES	78	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000014687
Euacanthomorphacea	ANCESTRAL SPECIES	37	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000014687
Percomorphaceae	ANCESTRAL SPECIES	37	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT01030000235154	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000014687
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t
Tetraodontidae	ANCESTRAL SPECIES	178									ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22
Fugu	MODERN SPECIES	8	ENSTRUG00000023709	map1lc3c (ENSTRUG00000010294)	strn (ENSTRUG00000009886)	btbd3a (ENSTRUG00000009813)	ndufaf5 (ENSTRUG00000009337)	ENSTRUG00000009141	ENSTRUG00000009228	snrpb2 (ENSTRUG00000009060)	otx2a (ENSTRUG00000020433)	mdh1aa (ENSTRUG00000008840) #17	ugp2a (ENSTRUG00000008604) #18	vps54 (ENSTRUG00000008328) #19	ENSTRUG00000008203 ##20	slc29a2 (ENSTRUG00000007976)	lgalsla (ENSTRUG00000007880) #21	aftpha (ENSTRUG00000021951) #22	ENSTRUG00000025352	ENSTRUG00000033070	ENSTRUG00000007617	slit1b (ENSTRUG00000006451)	ENSTRUG00000006194	MORN4 (ENSTRUG00000006096)	hoga1 (ENSTRUG00000005878)	cnnm1b (ENSTRUG00000033303)	ENSTRUG00000029841	NKX2-3 (ENSTRUG00000003800)	slc25a28 (ENSTRUG00000005224)	ENTPD7 (ENSTRUG00000004587)	ENSTRUG00000025299	atpv0e2 (ENSTRUG00000020769)	ENSTRUG00000004488
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002748	ENSTNIG00000001539	ENSTNIG00000002745	ENSTNIG00000002744	ENSTNIG00000002739	ndufaf5 (ENSTNIG00000002738)	gas8 (ENSTNIG00000002737)	ENSTNIG00000002736	snrpb2 (ENSTNIG00000002735)	otx2a (ENSTNIG00000002734)	mdh1aa (ENSTNIG00000002733) #17	ugp2a (ENSTNIG00000002732) #18	vps54 (ENSTNIG00000002731) #19	slc29a2 (ENSTNIG00000002730)	ENSTNIG00000001751	ENSTNIG00000002729 #22	PIK3R4 (ENSTNIG00000002727)	ENSTNIG00000002726	ENSTNIG00000002725	cenatac (ENSTNIG00000002724)	eno3 (ENSTNIG00000002719)	trappc1 (ENSTNIG00000001354)	ENSTNIG00000002718	ENSTNIG00000001909	ENSTNIG00000002717	ift46 (ENSTNIG00000002716)	ENSTNIG00000000419	cyb5d1 (ENSTNIG00000000191)	cyb5d1 (ENSTNIG00000002715)	plod3 (ENSTNIG00000002714)	kif5c (ENSTNIG00000002712)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t
Ballan wrasse	MODERN SPECIES	886															ENSLBEG00000028418	ENSLBEG00000028420 #22	ENSLBEG00000028423	RAB1A (ENSLBEG00000028426) #26	ENSLBEG00000028430	ENSLBEG00000028431 #27	ENSLBEG00000028435	SPRED2 (ENSLBEG00000028448) #28
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.j	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000007529	ENSGT00550000074956 #8	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.a.a	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a
Large yellow croaker	MODERN SPECIES	481	cct4 (ENSLCRG00005000430) #8	ENSLCRG00005000400 #7	ENSLCRG00005000395 #7	XPO1 (ENSLCRG00005000379)	USP34 (ENSLCRG00005000282)	commd1 (ENSLCRG00005000214) #9	b3gnt2a (ENSLCRG00005000207) #10	ENSLCRG00005018810	otx2a (ENSLCRG00005018806)	mdh1aa (ENSLCRG00005018780) #17	ugp2a (ENSLCRG00005018763) #18	vps54 (ENSLCRG00005017864) #19	ENSLCRG00005017841 ##20	slc29a2 (ENSLCRG00005017839)	lgalsla (ENSLCRG00005017838) #21	aftpha (ENSLCRG00005017835) #22	ENSLCRG00005017834 #23	RAB1A (ENSLCRG00005017831) #26	ENSLCRG00005017830	ENSLCRG00005017829	ACTR2 (ENSLCRG00005017810) #27	SPRED2 (ENSLCRG00005017808) #28	ENSLCRG00005017803 #30	ENSLCRG00005017797 #31	ENSLCRG00005017794	ENSLCRG00005017792	ENSLCRG00005017789 #35	cnrip1a (ENSLCRG00005017786) #36	fbxo48 (ENSLCRG00005017784)	ENSLCRG00005017783	prokr1a (ENSLCRG00005017781)
European seabass	MODERN SPECIES	20	ENSDLAG00005004902	ENSDLAG00005004960	ENSDLAG00005005184	ENSDLAG00005005654	commd1 (ENSDLAG00005033691) #9	b3gnt2a (ENSDLAG00005032538) #10	ENSDLAG00005011667	ENSDLAG00005030008	ENSDLAG00005034687	otx2a (ENSDLAG00005006154)	ENSDLAG00005006165 #17	VPS54 (ENSDLAG00005006511) #19	ugp2a (ENSDLAG00005006357) #18	ENSDLAG00005006861 ##20	ENSDLAG00005029267	ENSDLAG00005028918 #22	ENSDLAG00005006908 #23	RAB1A (ENSDLAG00005035043) #26	ENSDLAG00005029588	ENSDLAG00005032979 #27	SPRED2 (ENSDLAG00005021828) #28	ENSDLAG00005031613	ENSDLAG00005003260	ENSDLAG00005003298	ENSDLAG00005003360	ENSDLAG00005033994	ENSDLAG00005003427	ENSDLAG00005025252	ENSDLAG00005025247	ENSDLAG00005034351	ENSDLAG00005019304
Gilthead seabream	MODERN SPECIES		ENSSAUG00010000059	ENSSAUG00010000058	commd1 (ENSSAUG00010000055) #9	b3gnt2a (ENSSAUG00010000053) #10	ENSSAUG00010000051	otx2a (ENSSAUG00010000047)	mdh1aa (ENSSAUG00010000041) #17	slc29a2 (ENSSAUG00010000036)	ugp2a (ENSSAUG00010015967) #18	vps54 (ENSSAUG00010015425) #19	vps54 (ENSSAUG00010015872) #19	ENSSAUG00010015401 ##20	slc29a2 (ENSSAUG00010015396)	ENSSAUG00010015392 #21	ENSSAUG00010015387	aftpha (ENSSAUG00010015317) #22	ENSSAUG00010015314 #23	rab1aa (ENSSAUG00010015257)	ENSSAUG00010015251	ENSSAUG00010015245	ENSSAUG00010015231 #27	ENSSAUG00010015225	SPRED2 (ENSSAUG00010015220) #28	ENSSAUG00010015213	ENSSAUG00010015211	ENSSAUG00010013062 #30	ENSSAUG00010013026	ENSSAUG00010013021	ppp3r1b (ENSSAUG00010013005) #35	cnrip1a (ENSSAUG00010013003) #36	fbxo48 (ENSSAUG00010013002)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000178862	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.b	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a	ENSGT00940000155636.b.a	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000007529	ENSGT00550000074956 #8	ENSGT00940000178862	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.b	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT01030000235154	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a
Stickleback	MODERN SPECIES	4	ENSGACG00000019598	JAG1 (ENSGACG00000019600)	RRP36 (ENSGACG00000019603)	mdh1aa (ENSGACG00000019606) #17	ugp2a (ENSGACG00000019607) #18	vps54 (ENSGACG00000019620) #19	ENSGACG00000019626 ##20	ENSGACG00000019627	ENSGACG00000019628	ENSGACG00000019631	ENSGACG00000019632	ENSGACG00000019634	ENSGACG00000019635	ENSGACG00000019636	lgalsla (ENSGACG00000019637) #21	ENSGACG00000019639 #22	ENSGACG00000019641 #23	rab1aa (ENSGACG00000019642)	ACTR2 (ENSGACG00000019661) #27	SPRED2 (ENSGACG00000019664) #28	meis1b (ENSGACG00000019665) #30	ENSGACG00000019668	ppp3r1b (ENSGACG00000019669) #35	ENSGACG00000019670	cnrip1a (ENSGACG00000019671) #36	ENSGACG00000019675	fbxo48 (ENSGACG00000019676)	APLF (ENSGACG00000019678)	prokr1a (ENSGACG00000019681)	snrpb2 (ENSGACG00000019682)	KIF16B (ENSGACG00000019684)
Lumpfish	MODERN SPECIES		ENSCLMG00005015143	FAM161A (ENSCLMG00005015052) #7	XPO1 (ENSCLMG00005014924)	USP34 (ENSCLMG00005013361)	commd1 (ENSCLMG00005013349) #9	b3gnt2a (ENSCLMG00005013348) #10	ENSCLMG00005013347	otx2a (ENSCLMG00005013346)	mdh1aa (ENSCLMG00005013040) #17	ugp2a (ENSCLMG00005012905) #18	vps54 (ENSCLMG00005012756) #19	ENSCLMG00005012752 ##20	ENSCLMG00005012751	lgalsla (ENSCLMG00005012749) #21	ENSCLMG00005012748	aftpha (ENSCLMG00005012747) #22	ENSCLMG00005012745 #23	RAB1A (ENSCLMG00005012641) #26	ENSCLMG00005012639	ACTR2 (ENSCLMG00005012519) #27	SPRED2 (ENSCLMG00005012517) #28	ENSCLMG00005012515	ENSCLMG00005012513 #30	ENSCLMG00005012511	ENSCLMG00005012510	ENSCLMG00005012508	ENSCLMG00005012507	ppp3r1b (ENSCLMG00005012407) #35	cnrip1a (ENSCLMG00005012406) #36	fbxo48 (ENSCLMG00005012405)	prokr1a (ENSCLMG00005012404)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00550000074956 #8	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000154958 #26	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t
Channel bull blenny	MODERN SPECIES		XPO1 (ENSCGOG00000000002)	USP34 (ENSCGOG00000000003)	commd1 (ENSCGOG00000000007) #9	b3gnt2a (ENSCGOG00000000008) #10	ENSCGOG00000000009	otx2a (ENSCGOG00000000011)	mdh1aa (ENSCGOG00000000012) #17	ugp2a (ENSCGOG00000000013) #18	vps54 (ENSCGOG00000000014) #19	ENSCGOG00000000015 ##20	slc29a2 (ENSCGOG00000000016)	ENSCGOG00000000017	ENSCGOG00000000018	ENSCGOG00000000019	lgalsla (ENSCGOG00000000021) #21	aftpha (ENSCGOG00000000022) #22	ENSCGOG00000000023 #23	RAB1A (ENSCGOG00000000025) #26	ENSCGOG00000000026	ENSCGOG00000000027	ENSCGOG00000000028	ENSCGOG00000000029	ACTR2 (ENSCGOG00000000030) #27	ENSCGOG00000000031	SPRED2 (ENSCGOG00000000032) #28	ENSCGOG00000000033 #30	etaa1a (ENSCGOG00000000034) #31	ENSCGOG00000000035 #35	ENSCGOG00000000036	ENSCGOG00000000037	ENSCGOG00000000038
Pike perch	MODERN SPECIES	178	XPO1 (ENSSLUG00000009410)	USP34 (ENSSLUG00000009154)	ENSSLUG00000009084	ENSSLUG00000009079	commd1 (ENSSLUG00000009074) #9	b3gnt2a (ENSSLUG00000009066) #10	ENSSLUG00000009057	otx2a (ENSSLUG00000009049)	mdh1aa (ENSSLUG00000008772) #17	ugp2a (ENSSLUG00000007420) #18	vps54 (ENSSLUG00000006325) #19	ENSSLUG00000006285 ##20	slc29a2 (ENSSLUG00000006275)	lgalsla (ENSSLUG00000006260) #21	ENSSLUG00000006250	aftpha (ENSSLUG00000006238) #22	B3GNT2 (ENSSLUG00000006228) #10
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000176860	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881
Zig-zag eel	MODERN SPECIES	39	ENSMAMG00000017925	polr3f (ENSMAMG00000017975)	DZANK1 (ENSMAMG00000018017)	kat14 (ENSMAMG00000018053)	PET117 (ENSMAMG00000025003)	ENSMAMG00000018092	ENSMAMG00000018118	ENSMAMG00000018176	ENSMAMG00000018132	ENSMAMG00000018187	ENSMAMG00000026357	ENSMAMG00000018197	ENSMAMG00000018238	ENSMAMG00000028107	ENSMAMG00000026800	ENSMAMG00000018294 #22	ENSMAMG00000018306	ENSMAMG00000027595	ENSMAMG00000018327 #28	ENSMAMG00000018347 #30	etaa1a (ENSMAMG00000018382) #31	ppp3r1b (ENSMAMG00000018418) #35	cnrip1a (ENSMAMG00000018449) #36	fbxo48 (ENSMAMG00000018458)	ENSMAMG00000018475	ENSMAMG00000028308	ENSMAMG00000026568	ENSMAMG00000025879	snrpb2 (ENSMAMG00000018508)	ENSMAMG00000018548	ENSMAMG00000018627
Anabantoidei	ANCESTRAL SPECIES		ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000176860	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881
Climbing perch	MODERN SPECIES		ENSATEG00000015320	ENSATEG00000015329	ENSATEG00000015454	polr3f (ENSATEG00000015539)	DZANK1 (ENSATEG00000015570)	kat14 (ENSATEG00000015600)	PET117 (ENSATEG00000015625)	ENSATEG00000028742	ENSATEG00000030150	ENSATEG00000015702	ENSATEG00000015735	srd5a2a (ENSATEG00000015742)	ENSATEG00000025927	ENSATEG00000015779	ENSATEG00000015795	ENSATEG00000015832 #22	ENSATEG00000015844	ACTR2 (ENSATEG00000015864) #27	ENSATEG00000015886 #28	ENSATEG00000015914 #30	ENSATEG00000015947 #31	ENSATEG00000015981	ENSATEG00000027284	ppp3r1b (ENSATEG00000012880) #35	ENSATEG00000010114	cnrip1a (ENSATEG00000026047) #36	fbxo48 (ENSATEG00000016106)	ENSATEG00000016110	prokr1a (ENSATEG00000016138)	snrpb2 (ENSATEG00000016157)	ENSATEG00000016198
Carangaria	ANCESTRAL SPECIES		ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000158015.k.b	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35	ENSGT01030000235154	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a
Carangaria_A	ANCESTRAL SPECIES	63	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00940000158015.k.b	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35
Barramundi perch	MODERN SPECIES	56	dzank1 (ENSLCAG00010014369)	kat14 (ENSLCAG00010014370)	rrbp1b (ENSLCAG00010014371)	TMEM63B (ENSLCAG00010014440)	srd5a2a (ENSLCAG00010015204)	dpy30 (ENSLCAG00010015208)	psen2 (ENSLCAG00010015213)	ENSLCAG00010015219	ENSLCAG00010015223	tmem264 (ENSLCAG00010015225)	ENSLCAG00010015231	slc8a1a (ENSLCAG00010015246)	ENSLCAG00010015256	ENSLCAG00010015257	ENSLCAG00010015259	aftpha (ENSLCAG00010015260) #22	ENSLCAG00010015262	rab1aa (ENSLCAG00010015273)	ENSLCAG00010015329	ENSLCAG00010015330	ACTR2 (ENSLCAG00010015338) #27	SPRED2 (ENSLCAG00010015367) #28	ENSLCAG00010015388 #30	ENSLCAG00010015428	ENSLCAG00010015431
Seriola	ANCESTRAL SPECIES	87	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00940000158015.k.b	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.a #35
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3193	polr3f (ENSSLDG00000012761)	dzank1 (ENSSLDG00000012717)	kat14 (ENSSLDG00000012661)	rrbp1b (ENSSLDG00000012621)	TMEM63B (ENSSLDG00000012555)	srd5a2a (ENSSLDG00000012521)	dpy30 (ENSSLDG00000012505)	psen2 (ENSSLDG00000012471)	ENSSLDG00000012461	ENSSLDG00000012355	ENSSLDG00000012302	ENSSLDG00000012279	slc8a1a (ENSSLDG00000012261)	aftpha (ENSSLDG00000012239) #22	ENSSLDG00000012224	ENSSLDG00000012203 #22	rab1aa (ENSSLDG00000011757)	ACTR2 (ENSSLDG00000011605) #27	SPRED2 (ENSSLDG00000011578) #28	ENSSLDG00000011554 #30	ENSSLDG00000011501 #31
Yellowtail amberjack	MODERN SPECIES	3193	ENSSLDG00000012856	SPTBN1 (ENSSLDG00000012799)	polr3f (ENSSLDG00000012761)	dzank1 (ENSSLDG00000012717)	kat14 (ENSSLDG00000012661)	rrbp1b (ENSSLDG00000012621)	TMEM63B (ENSSLDG00000012555)	srd5a2a (ENSSLDG00000012521)	dpy30 (ENSSLDG00000012505)	psen2 (ENSSLDG00000012471)	ENSSLDG00000012461	ENSSLDG00000012355	ENSSLDG00000012302	ENSSLDG00000012279	slc8a1a (ENSSLDG00000012261)	aftpha (ENSSLDG00000012239) #22	ENSSLDG00000012224	ENSSLDG00000012203 #22	rab1aa (ENSSLDG00000011757)	ACTR2 (ENSSLDG00000011605) #27	SPRED2 (ENSSLDG00000011578) #28	ENSSLDG00000011554 #30	ENSSLDG00000011501 #31
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	209	ENSSDUG00000021762	ENSSDUG00000021772	SPTBN1 (ENSSDUG00000021869)	polr3f (ENSSDUG00000022435)	ENSSDUG00000022439	dzank1 (ENSSDUG00000022443)	kat14 (ENSSDUG00000022453)	TMEM63B (ENSSDUG00000022468)	srd5a2a (ENSSDUG00000022479)	dpy30 (ENSSDUG00000022485)	psen2 (ENSSDUG00000022491)	ENSSDUG00000022495	ENSSDUG00000022496	ENSSDUG00000022503	slc8a1a (ENSSDUG00000022509)	aftpha (ENSSDUG00000022518) #22	ENSSDUG00000022520	ENSSDUG00000022528 #22	RAB1A (ENSSDUG00000022535) #26	ENSSDUG00000022546	ACTR2 (ENSSDUG00000022560) #27	SPRED2 (ENSSDUG00000022578) #28	ENSSDUG00000022587 #30	ENSSDUG00000022600 #31	ENSSDUG00000022609 #35
Greater amberjack	MODERN SPECIES	209	SPTBN1 (ENSSDUG00000021869)	polr3f (ENSSDUG00000022435)	ENSSDUG00000022439	dzank1 (ENSSDUG00000022443)	kat14 (ENSSDUG00000022453)	TMEM63B (ENSSDUG00000022468)	srd5a2a (ENSSDUG00000022479)	dpy30 (ENSSDUG00000022485)	psen2 (ENSSDUG00000022491)	ENSSDUG00000022495	ENSSDUG00000022496	ENSSDUG00000022503	slc8a1a (ENSSDUG00000022509)	aftpha (ENSSDUG00000022518) #22	ENSSDUG00000022520	ENSSDUG00000022528 #22	RAB1A (ENSSDUG00000022535) #26	ENSSDUG00000022546	ACTR2 (ENSSDUG00000022560) #27	SPRED2 (ENSSDUG00000022578) #28	ENSSDUG00000022587 #30	ENSSDUG00000022600 #31	ENSSDUG00000022609 #35
Pleuronectoidei	ANCESTRAL SPECIES	97									ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000165109	ENSGT00940000155037	ENSGT00400000022158.b	ENSGT01100000263524.G.f.b	ENSGT00390000015299.a.b.b.b.c	ENSGT00940000155423	ENSGT00390000006712	ENSGT00940000157482.f	ENSGT00950000182898.a.a.a.a.b.g
Tongue sole	MODERN SPECIES	19	tmem178a (ENSCSEG00000021061)	opn6a (ENSCSEG00000021060)	SRF (ENSCSEG00000021059)	eif4a3 (ENSCSEG00000021058)	soul4 (ENSCSEG00000021057)	ENSCSEG00000021056	ENSCSEG00000021055	EOLA1 (ENSCSEG00000021054)	ENSCSEG00000021053	ENSCSEG00000021052	ENSCSEG00000021051	slc8a1a (ENSCSEG00000021050)	ENSCSEG00000020995	ENSCSEG00000020986	ENSCSEG00000020981	ENSCSEG00000020980 #22	rab1aa (ENSCSEG00000020977)	psen2 (ENSCSEG00000020973)	dpy30 (ENSCSEG00000020968)	srd5a2a (ENSCSEG00000020967)	alg13 (ENSCSEG00000020964)	AARS2 (ENSCSEG00000020958)	capn2l (ENSCSEG00000020954)	capn2b (ENSCSEG00000020950)	capn1b (ENSCSEG00000020948)	mrps28 (ENSCSEG00000020947)	sde2 (ENSCSEG00000020946)	SDK1 (ENSCSEG00000020941)	GNA12 (ENSCSEG00000020937)	ENSCSEG00000020936	ENSCSEG00000020935
Turbot	MODERN SPECIES	20	fbxo48 (ENSSMAG00000024007)	ENSSMAG00000021055	prokr1a (ENSSMAG00000021056)	snrpb2 (ENSSMAG00000021057)	ENSSMAG00000021058	ENSSMAG00000021064	ENSSMAG00000021065	esf1 (ENSSMAG00000021067)	ENSSMAG00000021069	srd5a2a (ENSSMAG00000028642)	ENSSMAG00000021806	ENSSMAG00000033295	ENSSMAG00000021072	ENSSMAG00000021074	ENSSMAG00000021076	ENSSMAG00000021075 #22	ENSSMAG00000021077	ENSSMAG00000021079	ENSSMAG00000021078	ENSSMAG00000021080	ENSSMAG00000037901	ENSSMAG00000021082	ENSSMAG00000021083	ENSSMAG00000021084	ENSSMAG00000021085	ENSSMAG00000021086
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00940000156530.c.`b.a #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t
Atherinomorphae	ANCESTRAL SPECIES	30	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00940000158908.m.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	31	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b
Aplocheiloidei	ANCESTRAL SPECIES	119														ENSGT00940000155129.B	ENSGT00940000176860	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t	ENSGT00390000014687	ENSGT00390000004881	ENSGT01030000234626.C	ENSGT00940000167000
Turquoise killifish	MODERN SPECIES	1611	capn1b (ENSNFUG00015002472)	mrps28 (ENSNFUG00015002460)	sde2 (ENSNFUG00015002455)	mtif2 (ENSNFUG00015002449)	EML6 (ENSNFUG00015002208)	SPTBN1 (ENSNFUG00015001986)	ENSNFUG00015001940	dzank1 (ENSNFUG00015001926)	PSEN2 (ENSNFUG00015001918)	DPY30 (ENSNFUG00015001912)	Nfu_g_1_015740 (ENSNFUG00015001899)	TMEM63B (ENSNFUG00015001821)	CSRP2BP (ENSNFUG00015001777)	slc8a1a (ENSNFUG00015001729)	ENSNFUG00015001717	AFTPHA (ENSNFUG00015001714) #22	rab1aa (ENSNFUG00015001695)	SPRED2A (ENSNFUG00015001684) #28	ETAA1 (ENSNFUG00015001671) #31	CNRIP1A (ENSNFUG00015001656)	ENSNFUG00015001649	prokr1a (ENSNFUG00015001643)	SNRPB2 (ENSNFUG00015001633)	KIF16B (ENSNFUG00015001583)	ENSNFUG00015001553	ndufaf5 (ENSNFUG00015001513)	esf1 (ENSNFUG00015001485)	acaa1 (ENSNFUG00015001441)	btbd3a (ENSNFUG00015001422)	strn (ENSNFUG00015001383)	ENSNFUG00015001370
Mangrove rivulus	MODERN SPECIES	911														slc8a1a (ENSKMAG00000007560)	ENSKMAG00000007583	aftpha (ENSKMAG00000007602) #22	ENSKMAG00000007618
Cyprinodontoidei	ANCESTRAL SPECIES	44	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t.a	ENSGT00390000014687	ENSGT00390000004881	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.i.b	ENSGT01030000234626.C
NAME_4	ANCESTRAL SPECIES	256												ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b.g	ENSGT00950000183209.b.a.b.h	ENSGT00940000155129.B	ENSGT00940000154186.a.r #22	ENSGT00940000177082	ENSGT00940000155078.a.b.a.a	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT01030000235154	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00940000170452	ENSGT00390000007046.a
Mummichog	MODERN SPECIES	647	strn (ENSFHEG00000015033)	ENSFHEG00000015003	ENSFHEG00000000369	esf1 (ENSFHEG00000014984)	btbd3a (ENSFHEG00000014929)	ENSFHEG00000014909	acaa1 (ENSFHEG00000014889)	ndufaf5 (ENSFHEG00000014825)	KIF16B (ENSFHEG00000014787)	gas8 (ENSFHEG00000014602)	ENSFHEG00000014562	ENSFHEG00000014546	slc8a1a (ENSFHEG00000014525)	ENSFHEG00000014476	ENSFHEG00000000824	ENSFHEG00000014430 #22	ENSFHEG00000014414 #26	SPRED2 (ENSFHEG00000014393) #28	ENSFHEG00000014367	ENSFHEG00000014353	ENSFHEG00000014310 #35	ENSFHEG00000014302	cnrip1a (ENSFHEG00000014292) #36	fbxo48 (ENSFHEG00000014283)	APLF (ENSFHEG00000014277)	prokr1a (ENSFHEG00000014272)	snrpb2 (ENSFHEG00000014266)
Sheepshead minnow	MODERN SPECIES	769															ENSCVAG00000022826	aftpha (ENSCVAG00000022815) #22	ENSCVAG00000022807	rab1aa (ENSCVAG00000022799)	SPRED2 (ENSCVAG00000022792) #28	ENSCVAG00000022771	ENSCVAG00000022760 #35	ENSCVAG00000022743	ENSCVAG00000022727	CAAP1 (ENSCVAG00000022670)	ENSCVAG00000022657	ENSCVAG00000022597
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t.a	ENSGT00390000014687	ENSGT00390000004881	ENSGT01030000234626.C	ENSGT00940000167000	ENSGT00390000009477.t.b
Poecilia	ANCESTRAL SPECIES	36	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000009477.t.a	ENSGT00390000014687	ENSGT00390000004881	ENSGT01030000234626.C	ENSGT00940000167000
NAME_6	ANCESTRAL SPECIES	437															ENSGT00940000155129.B	ENSGT00940000154186.a.r #22	ENSGT00940000177082	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35
Sailfin molly	MODERN SPECIES	1612															slc8a1a (ENSPLAG00000015800)	aftpha (ENSPLAG00000015618) #22	ENSPLAG00000015610	ENSPLAG00000015592 #26	SPRED2 (ENSPLAG00000015573) #28	ENSPLAG00000015551 #31	ENSPLAG00000015539 #35
Amazon molly	MODERN SPECIES	1222																aftpha (ENSPFOG00000000472) #22	ENSPFOG00000000498 #26	SPRED2 (ENSPFOG00000000561) #28	ENSPFOG00000000592 #35
Guppy	MODERN SPECIES	439	mtif2 (ENSPREG00000005632)	ENSPREG00000005457	SPTBN1 (ENSPREG00000005315)	polr3f (ENSPREG00000005278)	ENSPREG00000005262	kat14 (ENSPREG00000005232)	PET117 (ENSPREG00000005219)	TMEM63B (ENSPREG00000005091)	srd5a2a (ENSPREG00000005061)	dpy30 (ENSPREG00000005039)	psen2 (ENSPREG00000005012)	slc8a1a (ENSPREG00000004990)	ENSPREG00000004972	ENSPREG00000004958	ENSPREG00000004942	aftpha (ENSPREG00000004911) #22	rab1aa (ENSPREG00000004889)	SPRED2 (ENSPREG00000004862) #28	ENSPREG00000004854 #31	ENSPREG00000004846 #35	cnrip1a (ENSPREG00000004825) #36	fbxo48 (ENSPREG00000004805)	ENSPREG00000004796	snrpb2 (ENSPREG00000004780)	ENSPREG00000004764	ENSPREG00000004565	ndufaf5 (ENSPREG00000004464)	esf1 (ENSPREG00000004431)	acaa1 (ENSPREG00000004408)	btbd3a (ENSPREG00000004395)	GAS8 (ENSPREG00000004356)
Platyfish	MODERN SPECIES	19	EML6 (ENSXMAG00000004468)	SPTBN1 (ENSXMAG00000004511)	polr3f (ENSXMAG00000004604)	ENSXMAG00000009755	kat14 (ENSXMAG00000009770)	PET117 (ENSXMAG00000009773)	TMEM63B (ENSXMAG00000009775)	srd5a2a (ENSXMAG00000009822)	dpy30 (ENSXMAG00000022052)	psen2 (ENSXMAG00000009831)	slc8a1a (ENSXMAG00000015733)	ENSXMAG00000025445	ENSXMAG00000024168	ENSXMAG00000026720	ENSXMAG00000021545	aftpha (ENSXMAG00000027245) #22	ENSXMAG00000015776 #26	SPRED2 (ENSXMAG00000027999) #28	ENSXMAG00000027364 #31	cnrip1a (ENSXMAG00000029354) #36	fbxo48 (ENSXMAG00000026821)	ENSXMAG00000023522	snrpb2 (ENSXMAG00000000699)	ENSXMAG00000022845	ENSXMAG00000021124	ENSXMAG00000026500	gas8 (ENSXMAG00000017665)	ndufaf5 (ENSXMAG00000017654)	esf1 (ENSXMAG00000017651)	acaa1 (ENSXMAG00000017640)	btbd3a (ENSXMAG00000017637)
Oryzias	ANCESTRAL SPECIES	34	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.b.c.b	ENSGT00940000154864.a.a	ENSGT00940000158908.m.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00930000152160	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004881.gb	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162977	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000004284.f #36	ENSGT01060000249238	ENSGT00390000012248
Oryzias_b	ANCESTRAL SPECIES	36	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00940000154864.a.b.c.b	ENSGT00940000154864.a.a	ENSGT00940000158908.m.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000155078.a.b.a.a	ENSGT00940000156841.a.b #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004881.gb	ENSGT00390000014687	ENSGT00940000162977	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000004284.f #36	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.a.w.a	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000
Javanese ricefish	MODERN SPECIES			capn1b (ENSOJAG00000009639)	mrps28 (ENSOJAG00000009621)	sde2 (ENSOJAG00000009610)	polr3f (ENSOJAG00000004980)	ENSOJAG00000004889	kat14 (ENSOJAG00000004823)	PET117 (ENSOJAG00000004807)	ENSOJAG00000003769	srd5a2a (ENSOJAG00000003684)	dpy30 (ENSOJAG00000003649)	psen2 (ENSOJAG00000006051)	slc8a1a (ENSOJAG00000005866)	ENSOJAG00000005825	ENSOJAG00000005796	aftpha (ENSOJAG00000005739) #22	rab1aa (ENSOJAG00000005617)	SPRED2 (ENSOJAG00000005605) #28	ENSOJAG00000005569 #31	ppp3r1a (ENSOJAG00000005550) #35	esf1 (ENSOJAG00000005538)	ndufaf5 (ENSOJAG00000005275)	ENSOJAG00000005248	snrpb2 (ENSOJAG00000005013)	ENSOJAG00000004954	strn (ENSOJAG00000004918)	btbd3a (ENSOJAG00000004877)	acaa1 (ENSOJAG00000004801)	ENSOJAG00000004744	GPM6A (ENSOJAG00000004724)	ENSOJAG00000004705
Indian medaka	MODERN SPECIES	5	ENSOMEG00000008616	ENSOMEG00000008631	polr3f (ENSOMEG00000008655)	ENSOMEG00000008678	kat14 (ENSOMEG00000008704)	PET117 (ENSOMEG00000008729)	TMEM63B (ENSOMEG00000008822)	srd5a2a (ENSOMEG00000008887)	dpy30 (ENSOMEG00000008929)	psen2 (ENSOMEG00000008962)	slc8a1a (ENSOMEG00000008982)	ENSOMEG00000009000	ENSOMEG00000009011	ENSOMEG00000009016	ENSOMEG00000009038	ENSOMEG00000009057 #22	rab1aa (ENSOMEG00000009074)	SPRED2 (ENSOMEG00000009093) #28	ENSOMEG00000009106	ENSOMEG00000009240 #35	esf1 (ENSOMEG00000009311)	ndufaf5 (ENSOMEG00000009351)	ENSOMEG00000009408	snrpb2 (ENSOMEG00000009435)	prokr1a (ENSOMEG00000009448)	ENSOMEG00000009498	cnrip1a (ENSOMEG00000009532) #36	map1lc3c (ENSOMEG00000009556)	ENSOMEG00000009579	strn (ENSOMEG00000009596)	btbd3a (ENSOMEG00000009611)
Oryzias_a	ANCESTRAL SPECIES	83	ENSGT00390000001057	ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00930000152160	ENSGT00940000154186.a.r #22	ENSGT00390000001858	ENSGT00940000155078.a.b.a.a	ENSGT00940000156841.a.b.c #28	ENSGT00390000009597.d #31	ENSGT00940000156530.c.ab #35	ENSGT00390000004881.gb	ENSGT00390000014687
Chinese medaka	MODERN SPECIES	5148																ENSOSIG00000018105 #22	ENSOSIG00000018107	RAB1A (ENSOSIG00000018110) #26
Japanese Medaka HdrR	MODERN SPECIES		kat14 (ENSORLG00000020896)	PET117 (ENSORLG00000024989)	ENSORLG00000029940	ENSORLG00000030658	ENSORLG00000028387	ENSORLG00000027389	ENSORLG00000027314	srd5a2a (ENSORLG00000023920)	dpy30 (ENSORLG00000020166)	psen2 (ENSORLG00000020169)	slc8a1a (ENSORLG00000021978)	ENSORLG00000030543	ENSORLG00000023941	ENSORLG00000024894	ENSORLG00000025109	ENSORLG00000026450 #22	rab1aa (ENSORLG00000021846)	SPRED2 (ENSORLG00000022060) #28	ENSORLG00000025932 #31	ENSORLG00000025788 #35	esf1 (ENSORLG00000018625)	ENSORLG00000026894	ndufaf5 (ENSORLG00000027460)	ENSORLG00000026980	ENSORLG00000030028	ENSORLG00000028642	ENSORLG00000027450	ENSORLG00000024703	ENSORLG00000018797	ENSORLG00000030094	snrpb2 (ENSORLG00000019421)
Ovalentaria_B	ANCESTRAL SPECIES	36	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31
Cichlidae	ANCESTRAL SPECIES	32	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000156258.f.b	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT01030000235154	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT01030000235154	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00940000156530.c.`b.a #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	43	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00940000156530.c.`b.a #35	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.a
Haplochromini	ANCESTRAL SPECIES	49	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000177082	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000182088	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00940000156530.c.`b.a #35
Haplochromini_A	ANCESTRAL SPECIES	55	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00940000176860.g.b.a	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000182088	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b	ENSGT00940000156530.c.`b.a #35
Haplochromini_B	ANCESTRAL SPECIES	23	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00390000003866.a.a.f	ENSGT00950000183209.b.a.b	ENSGT00940000155129.B	ENSGT00390000001858	ENSGT00940000154186.a.r #22	ENSGT00940000154958 #26	ENSGT00940000156841.a.b #28	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT01070000255475	ENSGT00390000012248	ENSGT00390000004284.f #36	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.a.a.b.a.b.b.a	ENSGT00940000156530.c.`b.a #35
Zebra mbuna	MODERN SPECIES	1109	AARS2 (ENSMZEG00005000526)	alg13 (ENSMZEG00005000463)	ENSMZEG00005000453	ENSMZEG00005000430	opn6a (ENSMZEG00005000389)	SRF (ENSMZEG00005000347)	eif4a3 (ENSMZEG00005000259)	soul4 (ENSMZEG00005000216)	tmem178a (ENSMZEG00005000177)	ENSMZEG00005000140	tmem264 (ENSMZEG00005000124)	ENSMZEG00005014141	slc8a1a (ENSMZEG00005014000)	ENSMZEG00005013983	ENSMZEG00005013979	aftpha (ENSMZEG00005013968) #22	ENSMZEG00005013959 #26	SPRED2 (ENSMZEG00005013949) #28	ENSMZEG00005013934 #30	ENSMZEG00005013921 #31	esf1 (ENSMZEG00005013912)	ENSMZEG00005013906	ndufaf5 (ENSMZEG00005013897)	gas8 (ENSMZEG00005013887)	KIF16B (ENSMZEG00005013858)	snrpb2 (ENSMZEG00005013844)	prokr1a (ENSMZEG00005013836)	ENSMZEG00005013832	fbxo48 (ENSMZEG00005013823)	cnrip1a (ENSMZEG00005013817) #36	ENSMZEG00005013813
Eastern happy	MODERN SPECIES	18	ENSACLG00000003783	SPTBN1 (ENSACLG00000003646)	polr3f (ENSACLG00000003615)	dzank1 (ENSACLG00000003589)	kat14 (ENSACLG00000003528)	TMEM63B (ENSACLG00000003492)	srd5a2a (ENSACLG00000003478)	dpy30 (ENSACLG00000003452)	psen2 (ENSACLG00000003436)	ENSACLG00000003417	tmem264 (ENSACLG00000003407)	ENSACLG00000003397	slc8a1a (ENSACLG00000003376)	ENSACLG00000003363	ENSACLG00000003347	aftpha (ENSACLG00000003341) #22	ENSACLG00000003326 #26	SPRED2 (ENSACLG00000003307) #28	ENSACLG00000003003 #30	ENSACLG00000002989 #31	esf1 (ENSACLG00000002972)	ndufaf5 (ENSACLG00000002961)	gas8 (ENSACLG00000002953)	KIF16B (ENSACLG00000002787)	snrpb2 (ENSACLG00000002731)	prokr1a (ENSACLG00000002717)	ENSACLG00000002702	fbxo48 (ENSACLG00000002696)	cnrip1a (ENSACLG00000002666) #36	ENSACLG00000002644	ENSACLG00000002637
P. nyererei	MODERN SPECIES	520	ENSPNYG00000016404	SPTBN1 (ENSPNYG00000016339)	polr3f (ENSPNYG00000016276)	dzank1 (ENSPNYG00000016194)	kat14 (ENSPNYG00000016135)	TMEM63B (ENSPNYG00000016084)	srd5a2a (ENSPNYG00000016027)	dpy30 (ENSPNYG00000016005)	psen2 (ENSPNYG00000015979)	ENSPNYG00000015944	tmem264 (ENSPNYG00000015938)	ENSPNYG00000015926	slc8a1a (ENSPNYG00000015908)	ENSPNYG00000015890	ENSPNYG00000015881	aftpha (ENSPNYG00000015867) #22	ENSPNYG00000015841 #26	ENSPNYG00000015821	SPRED2 (ENSPNYG00000015806) #28	ENSPNYG00000015778 #30	ENSPNYG00000015755 #31	esf1 (ENSPNYG00000015735)	ndufaf5 (ENSPNYG00000015685)	gas8 (ENSPNYG00000015666)	KIF16B (ENSPNYG00000015563)	snrpb2 (ENSPNYG00000015510)	prokr1a (ENSPNYG00000015482)	ENSPNYG00000015475	fbxo48 (ENSPNYG00000015468)	cnrip1a (ENSPNYG00000015458) #36	ENSPNYG00000015452
Burton s mouthbrooder	MODERN SPECIES	560											tmem264 (ENSHBUG00000001758)	ENSHBUG00000001764	ENSHBUG00000001768	ENSHBUG00000001773	ENSHBUG00000001782	aftpha (ENSHBUG00000001791) #22	ENSHBUG00000001802 #26	ENSHBUG00000001812	SPRED2 (ENSHBUG00000001816) #28	ENSHBUG00000001866 #30	ENSHBUG00000001880	esf1 (ENSHBUG00000001890)	ndufaf5 (ENSHBUG00000001909)	gas8 (ENSHBUG00000001919)	ENSHBUG00000001940	snrpb2 (ENSHBUG00000001962)	ENSHBUG00000001970	fbxo48 (ENSHBUG00000001975)	cnrip1a (ENSHBUG00000001986) #36	ENSHBUG00000001989	ENSHBUG00000002001 #35
Lyretail cichlid	MODERN SPECIES	454	dzank1 (ENSNBRG00000020762)	kat14 (ENSNBRG00000020725)	PET117 (ENSNBRG00000020712)	ENSNBRG00000020694	ENSNBRG00000020682	ENSNBRG00000020671	ENSNBRG00000020655	psen2 (ENSNBRG00000020606)	ENSNBRG00000020592	ENSNBRG00000020572	ENSNBRG00000020562	ENSNBRG00000020554	slc8a1a (ENSNBRG00000020535)	ENSNBRG00000020528	ENSNBRG00000020514	aftpha (ENSNBRG00000020506) #22	ENSNBRG00000020492 #26	SPRED2 (ENSNBRG00000020478) #28	ENSNBRG00000020371 #30	ENSNBRG00000020339 #31	esf1 (ENSNBRG00000020319)	ENSNBRG00000020312	ndufaf5 (ENSNBRG00000020263)	ENSNBRG00000020242	ENSNBRG00000020231	snrpb2 (ENSNBRG00000020214)	prokr1a (ENSNBRG00000020199)	fbxo48 (ENSNBRG00000020175)	cnrip1a (ENSNBRG00000020157) #36	acaa1 (ENSNBRG00000020134)	btbd3a (ENSNBRG00000020120)
Midas cichlid	MODERN SPECIES	117	RB1CC1 (ENSACIG00000018763)	ST18 (ENSACIG00000018723)	pcmtd1 (ENSACIG00000018704)	SNTG1 (ENSACIG00000018689)	snai2 (ENSACIG00000018641)	dpy30 (ENSACIG00000018634)	psen2 (ENSACIG00000018610)	ENSACIG00000018593	spast (ENSACIG00000018560)	ENSACIG00000018555	ENSACIG00000018520	ENSACIG00000018506	slc8a1a (ENSACIG00000018486)	ENSACIG00000018443	ENSACIG00000018430	ENSACIG00000018423 #22	ENSACIG00000018410 #26	SPRED2 (ENSACIG00000018400) #28	ENSACIG00000018380 #30	etaa1a (ENSACIG00000018367) #31	ENSACIG00000018359	ENSACIG00000018351	esf1 (ENSACIG00000018305)	ndufaf5 (ENSACIG00000018247)	GAS8 (ENSACIG00000018223)	KIF16B (ENSACIG00000018167)	snrpb2 (ENSACIG00000018146)	prokr1a (ENSACIG00000018124)	ENSACIG00000018116	fbxo48 (ENSACIG00000018104)	cnrip1a (ENSACIG00000018095) #36
Pomacentridae	ANCESTRAL SPECIES	113	ENSGT00530000063402.b	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00950000183209.b.a.b	ENSGT00940000177082	ENSGT00940000154186.a.r #22
Bicolor damselfish	MODERN SPECIES	1574	ENSSPAG00000002160	ENSSPAG00000002145	ENSSPAG00000002127	polr3f (ENSSPAG00000002092)	DZANK1 (ENSSPAG00000001937)	PET117 (ENSSPAG00000001920)	kat14 (ENSSPAG00000001897)	TMEM63B (ENSSPAG00000001852)	srd5a2a (ENSSPAG00000001822)	dpy30 (ENSSPAG00000001807)	psen2 (ENSSPAG00000001772)	ENSSPAG00000001715	slc8a1a (ENSSPAG00000001695)	ENSSPAG00000001470	ENSSPAG00000001422	ENSSPAG00000001395 #22
Pomacentridae_A	ANCESTRAL SPECIES	83	ENSGT00900000141103	ENSGT00940000155564.n	ENSGT00940000154864.a.a	ENSGT00390000009679	ENSGT00390000000549.bb	ENSGT00390000000549.cb	ENSGT00390000001146	ENSGT00520000059926	ENSGT00940000157084.e.a	ENSGT00950000182886.b.a.b	ENSGT00390000008808.q	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00950000183209.b.a.b	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000156841.a.b #28	ENSGT00940000154958 #26	ENSGT00940000156327.k #30	ENSGT00390000009597.d #31	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591
Amphiprion	ANCESTRAL SPECIES	124	ENSGT00940000173775	ENSGT00940000162658.b	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00940000175728	ENSGT00940000153974.A	ENSGT00940000157923	ENSGT00940000155129.B	ENSGT00950000183209.b.a.b	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00940000156841.a.b #28	ENSGT00940000154958 #26	ENSGT00390000009597.d #31	ENSGT00940000166218	ENSGT00950000183095.a.b.a.b.b.a	ENSGT00940000167000	ENSGT01030000234626.C	ENSGT00390000004881	ENSGT00390000014687	ENSGT00390000009477.t	ENSGT00940000162838.g.a	ENSGT00390000007046.a	ENSGT00940000170452	ENSGT00390000010591	ENSGT00390000012248
Clown anemonefish	MODERN SPECIES	2334												PTCD1 (ENSAOCG00000020741)	psen2 (ENSAOCG00000020726)	slc8a1a (ENSAOCG00000020709)	ENSAOCG00000001985	aftpha (ENSAOCG00000020649) #22	ENSAOCG00000020643	SPRED2 (ENSAOCG00000020630) #28	ENSAOCG00000020606 #26	ENSAOCG00000020579
Orange clownfish	MODERN SPECIES	17	hapstr1b (ENSAPEG00000022794)	ENSAPEG00000022789	ENSAPEG00000022754	ENSAPEG00000022728	alkbh5 (ENSAPEG00000022697)	mief2 (ENSAPEG00000022682)	smcr8b (ENSAPEG00000022674)	ENSAPEG00000022651	PTCD1 (ENSAPEG00000022632)	psen2 (ENSAPEG00000022613)	slc8a1a (ENSAPEG00000022587)	ENSAPEG00000022581	ENSAPEG00000022553	ENSAPEG00000022545	ENSAPEG00000022531	aftpha (ENSAPEG00000022525) #22	SPRED2 (ENSAPEG00000022501) #28	ENSAPEG00000022488 #26	ENSAPEG00000022475 #31	map1lc3c (ENSAPEG00000022466)	strn (ENSAPEG00000022429)	btbd3a (ENSAPEG00000022414)	acaa1 (ENSAPEG00000022396)	esf1 (ENSAPEG00000022385)	ndufaf5 (ENSAPEG00000022351)	gas8 (ENSAPEG00000022335)	KIF16B (ENSAPEG00000022252)	snrpb2 (ENSAPEG00000022231)	prokr1a (ENSAPEG00000022223)	APLF (ENSAPEG00000022214)	ENSAPEG00000022203
Spiny chromis	MODERN SPECIES	1371				kat14 (ENSAPOG00000008691)	ENSAPOG00000008636	ENSAPOG00000008622	ENSAPOG00000008609	ENSAPOG00000008595	srd5a2a (ENSAPOG00000008584)	dpy30 (ENSAPOG00000008560)	psen2 (ENSAPOG00000008472)	ENSAPOG00000008404	slc8a1a (ENSAPOG00000008275)	ENSAPOG00000008237	spast (ENSAPOG00000008209)	aftpha (ENSAPOG00000008199) #22	ENSAPOG00000008184	SPRED2 (ENSAPOG00000008161) #28	ENSAPOG00000008143 #26	ENSAPOG00000008132 #30	ENSAPOG00000008119 #31	map1lc3c (ENSAPOG00000008104)	strn (ENSAPOG00000008068)
Pinecone sodierfish	MODERN SPECIES		XPO1 (ENSMMDG00005011834)	USP34 (ENSMMDG00005010790)	ENSMMDG00005010738	ENSMMDG00005010735	commd1 (ENSMMDG00005010733) #9	b3gnt2a (ENSMMDG00005010730) #10	ENSMMDG00005010726	otx2a (ENSMMDG00005010720)	mdh1aa (ENSMMDG00005010643) #17	ugp2a (ENSMMDG00005009111) #18	vps54 (ENSMMDG00005008574) #19	ENSMMDG00005008567 ##20	slc29a2 (ENSMMDG00005008565)	lgalsla (ENSMMDG00005008564) #21	ENSMMDG00005008562	aftpha (ENSMMDG00005008560) #22	ENSMMDG00005008554 #23	RAB1A (ENSMMDG00005008549) #26	ACTR2 (ENSMMDG00005008542) #27	SPRED2 (ENSMMDG00005008521) #28	ENSMMDG00005008505 #30	ENSMMDG00005008491 #31	ppp3r1b (ENSMMDG00005008478) #35	cnrip1a (ENSMMDG00005008472) #36	ENSMMDG00005008468	snrpb2 (ENSMMDG00005008460)	ENSMMDG00005008402	ndufaf5 (ENSMMDG00005008365)	esf1 (ENSMMDG00005008361)	ENSMMDG00005008307	strn (ENSMMDG00005007845)
Cod	MODERN SPECIES	16	ENSGMOG00000035609	ENSGMOG00000029985	ENSGMOG00000025136	ENSGMOG00000014680 #9	ENSGMOG00000035226 #10	ENSGMOG00000031691	otx2a (ENSGMOG00000032864)	MDH1 (ENSGMOG00000003426) #17	ugp2a (ENSGMOG00000003445) #18	VPS54 (ENSGMOG00000003472) #19	ENSGMOG00000037064 ##20	ENSGMOG00000012791	ENSGMOG00000025534	LGALSL (ENSGMOG00000009968) #21	ENSGMOG00000032402	AFTPH (ENSGMOG00000030916) #22	ENSGMOG00000025646 #23	RAB1A (ENSGMOG00000010022) #26	actr2a (ENSGMOG00000010030) #27	SPRED2 (ENSGMOG00000033943) #28	meis1a (ENSGMOG00000014286) #30	ENSGMOG00000000841 #31	ENSGMOG00000030417	ENSGMOG00000031157	ENSGMOG00000000805	ENSGMOG00000000793	ENSGMOG00000032206	ENSGMOG00000004358	ENSGMOG00000033424	ENSGMOG00000030811	ENSGMOG00000029633
Protacanthopterygii	ANCESTRAL SPECIES	116	ENSGT00940000157824.i.a #7	ENSGT00940000153408.B.s.b	ENSGT00940000158659	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00940000163878	ENSGT00390000012029 #9	ENSGT00940000155345.r #10	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #17	ENSGT00940000153464.B.z.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b #23	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b #28	ENSGT00940000156327.l.p #30	ENSGT00390000009597.d #31	ENSGT00940000156530.c.`b.b #35	ENSGT00390000004284.f #36	ENSGT00390000012248	ENSGT00390000010591	ENSGT00990000212397	ENSGT00940000170452	ENSGT00390000007046.a	ENSGT00940000162838.g.a	ENSGT00390000014687
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	358														ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r.e #22	ENSGT00530000063867.b #23	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000156841.a.b.f #28	ENSGT00940000156327.l.p.b #30	ENSGT00390000009597.d.f #31	ENSGT00940000156530.c.`b.b.g.b #35	ENSGT00390000004284.f.e #36	ENSGT00390000012248.j	ENSGT00390000010591.k	ENSGT00390000007046.a.e.b	ENSGT00390000009597.d.e #31	ENSGT00940000156530.c.`b.b.g.a #35	ENSGT00390000004284.f.f #36	ENSGT00390000012248.i	ENSGT00390000010591.l
Huchen	MODERN SPECIES	1644															lgalsla (ENSHHUG00000036450) #21	aftpha (ENSHHUG00000036456) #22	sertad2b (ENSHHUG00000036469) #23	rab1ab (ENSHHUG00000036473)	ACTR2 (ENSHHUG00000036517) #27	SPRED2 (ENSHHUG00000036561) #28	meis1b (ENSHHUG00000036568) #30	etaa1a (ENSHHUG00000036767) #31	PPP3R1 (ENSHHUG00000036776) #35	cnrip1a (ENSHHUG00000036882) #36	fbxo48 (ENSHHUG00000036891)	APLF (ENSHHUG00000036895)
Salmoninae_a	ANCESTRAL SPECIES	67	ENSGT00940000178862.a.a	ENSGT00940000157824.i.a.eb.a #7	ENSGT00940000153408.B.s.b.m	ENSGT00940000158659.d	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #9	ENSGT00940000155345.r.a #10	ENSGT01100000263601.a	ENSGT00940000161234.d.b #14	ENSGT00530000063410.a.q.b.d #17	ENSGT00940000153464.B.z.a.g #18	ENSGT00390000000583.b #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r.e #22	ENSGT00530000063867.b.c #23	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b #27	ENSGT00940000156841.a.b.f #28	ENSGT00940000156327.l.p.b #30	ENSGT00390000009597.d.f #31	ENSGT00940000156530.c.`b.b.g.b #35	ENSGT00390000004284.f.e #36	ENSGT00390000012248.j	ENSGT01100000263476.C.a.a.a.b.b.b	ENSGT00390000010591.k	ENSGT00390000007046.a.e.b	ENSGT00940000162838.g.a.c.b	ENSGT00390000014687.d	ENSGT00390000004881.ac.a
Salmo	ANCESTRAL SPECIES	56	ENSGT00550000074956.f #8	ENSGT00940000178862.a.a	ENSGT00940000157824.i.a.eb.a #7	ENSGT00940000153408.B.s.b.m	ENSGT00940000158659.d	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #9	ENSGT00940000155345.r.a #10	ENSGT01100000263601.a	ENSGT00940000161234.d.b #14	ENSGT00530000063410.a.q.b.d #17	ENSGT00940000153464.B.z.a.g #18	ENSGT00390000000583.b #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r.e #22	ENSGT00530000063867.b.c #23	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b #27	ENSGT00940000156841.a.b.f #28	ENSGT00940000156327.l.p.b #30	ENSGT00390000009597.d.f.b #31	ENSGT00940000156530.c.`b.b.g.b #35	ENSGT00390000004284.f.e #36	ENSGT00390000012248.j	ENSGT01100000263476.C.a.a.a.b.b.b	ENSGT00390000010591.k	ENSGT00390000007046.a.e.b	ENSGT00940000162838.g.a.c.b	ENSGT00390000014687.d	ENSGT00390000004881.ac.a
Atlantic salmon	MODERN SPECIES	3	pus10 (ENSSSAG00000067264)	cct4 (ENSSSAG00000067334) #8	FAM161A (ENSSSAG00000067389) #7	XPO1 (ENSSSAG00000067396)	USP34 (ENSSSAG00000067530)	ENSSSAG00000105301	ENSSSAG00000067653	commd1 (ENSSSAG00000067660) #9	b3gnt2a (ENSSSAG00000089430) #10	ENSSSAG00000067665	OTX1 (ENSSSAG00000084328) #14	MDH1 (ENSSSAG00000067693) #17	ugpa (ENSSSAG00000067874) #18	vps54 (ENSSSAG00000067962) #19	ENSSSAG00000114332 ##20	aftpha (ENSSSAG00000068076) #22	SERTAD2 (ENSSSAG00000111855) #23	ENSSSAG00000068085	ARP2A (ENSSSAG00000068208) #27	ENSSSAG00000102278	ENSSSAG00000087132	SPRED2 (ENSSSAG00000092399) #28	MEIS1 (ENSSSAG00000068225) #30	etaa1a (ENSSSAG00000068884) #31	ENSSSAG00000068903 #35	fbxo48 (ENSSSAG00000121997)	ENSSSAG00000068923	ENSSSAG00000068926	ENSSSAG00000107393	snrpb2 (ENSSSAG00000068944)	ENSSSAG00000069013
River trout	MODERN SPECIES	5	pus10 (ENSSTUG00000030653)	cct4 (ENSSTUG00000030507) #8	ENSSTUG00000030498	ENSSTUG00000030496 #7	XPO1 (ENSSTUG00000030289)	ENSSTUG00000030085	commd1 (ENSSTUG00000030068) #9	b3gnt2a (ENSSTUG00000030059) #10	ENSSTUG00000030046	OTX1 (ENSSTUG00000030039) #14	mdh1aa (ENSSTUG00000029738) #17	ugp2a (ENSSTUG00000029583) #18	vps54 (ENSSTUG00000028493) #19	ENSSTUG00000028433 ##20	lgalsla (ENSSTUG00000028414) #21	aftpha (ENSSTUG00000028372) #22	sertad2b (ENSSTUG00000028367) #23	rab1ab (ENSSTUG00000028280)	ACTR2 (ENSSTUG00000028049) #27	SPRED2 (ENSSTUG00000035506) #28	meis1b (ENSSTUG00000034640) #30	etaa1a (ENSSTUG00000034507) #31	PPP3R1 (ENSSTUG00000034407) #35	cnrip1a (ENSSTUG00000034391) #36	fbxo48 (ENSSTUG00000034385)	ENSSTUG00000034373	APLF (ENSSTUG00000034342)	snrpb2 (ENSSTUG00000034295)	KIF16B (ENSSTUG00000034101)	esf1 (ENSSTUG00000034056)	ENSSTUG00000034034
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000157824.i.a.db.a.a #7	ENSGT00940000157824.i.a.eb.a #7	ENSGT00940000153408.B.s.b.m	ENSGT00940000158659.d	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #9	ENSGT00940000155345.r.a #10	ENSGT01100000263601.a	ENSGT00940000161234.d.b.a #14	ENSGT00530000063410.a.q.b.d #17	ENSGT00940000153464.B.z.a.g #18	ENSGT00390000000583.b #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r.e #22	ENSGT00530000063867.b.c #23	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b #27	ENSGT00940000156841.a.b.f #28	ENSGT00940000156327.l.p.b #30	ENSGT00390000009597.d.f #31	ENSGT00940000156530.c.`b.b.g.b #35	ENSGT00390000004284.f.e #36	ENSGT00390000012248.j	ENSGT01060000249238	ENSGT00390000007046.a.e.b	ENSGT00940000162838.g.a.c.b	ENSGT00390000014687.d	ENSGT00390000004881.ac.a	ENSGT00940000156461.o.b
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00940000157824.i.a.db.a.a #7	ENSGT00940000157824.i.a.eb.a #7	ENSGT00940000153408.B.s.b.m	ENSGT00940000158659.d	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #9	ENSGT00940000155345.r.a #10	ENSGT01100000263601.a	ENSGT00940000161234.d.b.a #14	ENSGT00530000063410.a.q.b.d #17	ENSGT00940000153464.B.z.a.g #18	ENSGT00390000000583.b #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##20	ENSGT00940000155337.`b #21	ENSGT00940000177082	ENSGT00940000154186.a.r.e #22	ENSGT00530000063867.b.c #23	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b #27	ENSGT00940000156841.a.b.f #28	ENSGT00940000156327.l.p.b #30	ENSGT00390000009597.d.f #31	ENSGT00940000156530.c.`b.b.g.b #35	ENSGT00390000004284.f.e #36	ENSGT00390000012248.j	ENSGT01060000249238	ENSGT00390000007046.a.e.b	ENSGT00940000162838.g.a.c.b	ENSGT00390000014687.d	ENSGT00390000004881.ac.a	ENSGT00940000156461.o.b
Chinook salmon	MODERN SPECIES	11	ENSOTSG00005009005 #7	XPO1 (ENSOTSG00005009013)	USP34 (ENSOTSG00005009050)	ENSOTSG00005009228	ENSOTSG00005009229	ENSOTSG00005009230	commd1 (ENSOTSG00005009231) #9	b3gnt2a (ENSOTSG00005009232) #10	ENSOTSG00005009233	OTX1 (ENSOTSG00005009235) #14	mdh1aa (ENSOTSG00005009236) #17	ugp2a (ENSOTSG00005009238) #18	vps54 (ENSOTSG00005009904) #19	ENSOTSG00005010658 ##20	lgalsla (ENSOTSG00005010659) #21	aftpha (ENSOTSG00005010660) #22	sertad2b (ENSOTSG00005010663) #23	rab1ab (ENSOTSG00005010665)	ACTR2 (ENSOTSG00005010672) #27	SPRED2 (ENSOTSG00005010765) #28	meis1b (ENSOTSG00005010767) #30	etaa1a (ENSOTSG00005010768) #31	PPP3R1 (ENSOTSG00005010770) #35	cnrip1a (ENSOTSG00005010806) #36	ENSOTSG00005010807	ENSOTSG00005010809	snrpb2 (ENSOTSG00005010811)	KIF16B (ENSOTSG00005010818)	ndufaf5 (ENSOTSG00005010825)	esf1 (ENSOTSG00005010830)	ENSOTSG00005010833
Coho salmon	MODERN SPECIES		cct4 (ENSOKIG00005045653) #8	FAM161A (ENSOKIG00005045635) #7	ENSOKIG00005045490	USP34 (ENSOKIG00005044727)	ENSOKIG00005044680	commd1 (ENSOKIG00005044673) #9	b3gnt2a (ENSOKIG00005044669) #10	ENSOKIG00005044662	OTX1 (ENSOKIG00005044655) #14	mdh1aa (ENSOKIG00005044577) #17	ugp2a (ENSOKIG00005043894) #18	vps54 (ENSOKIG00005042711) #19	ENSOKIG00005042591 ##20	lgalsla (ENSOKIG00005042539) #21	ENSOKIG00005042517	aftpha (ENSOKIG00005042497) #22	SERTAD2 (ENSOKIG00005042488) #23	ENSOKIG00005042429	ACTR2 (ENSOKIG00005042275) #27	SPRED2 (ENSOKIG00005042251) #28	MEIS1 (ENSOKIG00005041796) #30	etaa1a (ENSOKIG00005041770) #31	PPP3R1 (ENSOKIG00005041674) #35	cnrip1a (ENSOKIG00005041645) #36	fbxo48 (ENSOKIG00005041638)	ENSOKIG00005041623	ENSOKIG00005041611	snrpb2 (ENSOKIG00005041545)	KIF16B (ENSOKIG00005041310)	ENSOKIG00005041263	ndufaf5 (ENSOKIG00005041204)
Rainbow trout	MODERN SPECIES	8	cct4 (ENSOMYG00000018803) #8	ENSOMYG00000074120 #7	ENSOMYG00000018929 #7	XPO1 (ENSOMYG00000018989)	USP34 (ENSOMYG00000019272)	commd1 (ENSOMYG00000019628) #9	b3gnt2a (ENSOMYG00000019635) #10	ENSOMYG00000019642	OTX1 (ENSOMYG00000019650) #14	MDH1 (ENSOMYG00000019660) #17	UGP2 (ENSOMYG00000019790) #18	vps54 (ENSOMYG00000020947) #19	ENSOMYG00000021247 ##20	ENSOMYG00000052056	lgalsla (ENSOMYG00000021281) #21	ENSOMYG00000070037 #22	SERTAD2 (ENSOMYG00000021333) #23	ENSOMYG00000021355	ACTR2 (ENSOMYG00000021385) #27	SPRED2 (ENSOMYG00000048611) #28	ENSOMYG00000068147	MEIS1 (ENSOMYG00000021484) #30	etaa1a (ENSOMYG00000021545) #31	PPP3R1 (ENSOMYG00000021603) #35	cnrip1a (ENSOMYG00000021755) #36	fbxo48 (ENSOMYG00000021763)	ENSOMYG00000021766	ENSOMYG00000021770	snrpb2 (ENSOMYG00000021783)	ENSOMYG00000021901	ENSOMYG00000022012
Salmoninae	ANCESTRAL SPECIES	187	ENSGT00550000074956.e #8	ENSGT00940000157824.i.a.db #7	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #7	ENSGT00940000153408.B.s.b.n	ENSGT00940000158659	ENSGT00940000163878	ENSGT00390000012029.hb #9	ENSGT00940000155345.r.b #10	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #17	ENSGT00940000153464.B.z.a.h #18	ENSGT00390000000583.a #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##20	ENSGT00940000154186.a.r.f #22	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a #27	ENSGT00940000156841.a.b.e #28	ENSGT00940000156327.l.p.a #30
Salmoninae_a	ANCESTRAL SPECIES	58	ENSGT00390000007529.c	ENSGT00550000074956.e #8	ENSGT00940000157824.i.a.db #7	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #7	ENSGT00940000153408.B.s.b.n	ENSGT00940000158659.c	ENSGT00390000012029.hb #9	ENSGT00940000155345.r.b #10	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #17	ENSGT00940000153464.B.z.a.h #18	ENSGT00390000000583.a #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##20	ENSGT00940000154186.a.r.f #22	ENSGT00530000063867.b.d #23	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a #27	ENSGT00940000156841.a.b.e #28	ENSGT00940000156327.l.p.a #30	ENSGT00390000009597.d.e.a #31	ENSGT00940000156530.c.`b.b.g.a #35	ENSGT00390000004284.f.f #36	ENSGT00390000012248.i	ENSGT00390000010591.l	ENSGT00940000166657.b	ENSGT00940000170452	ENSGT00390000007046.a.e.a	ENSGT00940000162838.g.a.c.a	ENSGT00390000014687.c
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000166495.d	ENSGT00390000007529.c	ENSGT00550000074956.e #8	ENSGT00940000157824.i.a.db #7	ENSGT00940000157824.i.a.eb.b #7	ENSGT00940000153408.B.s.b.n	ENSGT00940000158659.c	ENSGT00390000012029.hb #9	ENSGT00940000155345.r.b #10	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #17	ENSGT00940000153464.B.z.a.h #18	ENSGT00390000000583.a #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##20	ENSGT00940000154186.a.r.f #22	ENSGT00530000063867.b.d #23	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a #27	ENSGT00940000156841.a.b.e #28	ENSGT00940000156327.l.p.a #30	ENSGT00390000009597.d.f.a #31	ENSGT00940000156530.c.`b.b.h #35	ENSGT00390000004284.f.f #36	ENSGT00390000012248.i	ENSGT00390000010591.l	ENSGT00940000166657.b	ENSGT00390000007046.a.e.a	ENSGT00940000162838.g.a.c.a	ENSGT00390000014687.c	ENSGT00390000004881.ac.b
River trout	MODERN SPECIES	31	cct4 (ENSSTUG00000040147) #8	ENSSTUG00000040233 #7	ENSSTUG00000040240 #7	XPO1 (ENSSTUG00000040259)	USP34 (ENSSTUG00000040582)	ENSSTUG00000041961	commd1 (ENSSTUG00000041981) #9	b3gnt2a (ENSSTUG00000041990) #10	ENSSTUG00000041996	otx2a (ENSSTUG00000042030)	mdh1aa (ENSSTUG00000042055) #17	ugp2a (ENSSTUG00000042169) #18	vps54 (ENSSTUG00000043877) #19	ENSSTUG00000044491 ##20	ENSSTUG00000044535	aftpha (ENSSTUG00000044544) #22	sertad2b (ENSSTUG00000044559) #23	rab1ab (ENSSTUG00000044565)	ACTR2 (ENSSTUG00000044585) #27	SPRED2 (ENSSTUG00000044781) #28	meis1b (ENSSTUG00000044793) #30	ENSSTUG00000044961	etaa1a (ENSSTUG00000044971) #31	PPP3R1 (ENSSTUG00000045013) #35	cnrip1a (ENSSTUG00000045100) #36	fbxo48 (ENSSTUG00000045114)	ENSSTUG00000045128	ENSSTUG00000045138	snrpb2 (ENSSTUG00000045143)	KIF16B (ENSSTUG00000045176)	ndufaf5 (ENSSTUG00000045298)
Atlantic salmon	MODERN SPECIES	11	tcpd (ENSSSAG00000001365) #8	pus10 (ENSSSAG00000001442)	ENSSSAG00000001342 #7	FAM161A (ENSSSAG00000001345) #7	XPO1 (ENSSSAG00000001278)	USP34 (ENSSSAG00000001012)	commd1 (ENSSSAG00000106111) #9	b3gnt2a (ENSSSAG00000105672) #10	ENSSSAG00000000945	OTX1 (ENSSSAG00000081994) #14	ENSSSAG00000104132	MDH1 (ENSSSAG00000000909) #17	UGP2 (ENSSSAG00000000820) #18	vps54 (ENSSSAG00000000613) #19	ENSSSAG00000090533 ##20	aftpha (ENSSSAG00000000430) #22	SERTAD2 (ENSSSAG00000112806) #23	ENSSSAG00000000410	ARP2A (ENSSSAG00000000385) #27	SPRED2 (ENSSSAG00000106065) #28	MEIS1 (ENSSSAG00000000278) #30	etaa1a (ENSSSAG00000053570) #31	PPP3R1 (ENSSSAG00000100782) #35	cnrip1a (ENSSSAG00000083138) #36	fbxo48 (ENSSSAG00000053532)	ENSSSAG00000081788	ENSSSAG00000114042	RU2B (ENSSSAG00000053481)	ENSSSAG00000052734	ENSSSAG00000052530	ENSSSAG00000052501
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT00940000166495.d	ENSGT00390000007529.c	ENSGT00550000074956.e #8	ENSGT00940000157824.i.a.db.b #7	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #7	ENSGT00940000153408.B.s.b.n	ENSGT00940000158659.c	ENSGT00390000012029.hb #9	ENSGT00940000155345.r.b #10	ENSGT00940000161234.d.b.b #14	ENSGT00530000063410.a.q.b.c #17	ENSGT00940000153464.B.z.a.h #18	ENSGT00390000000583.a #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##20	ENSGT00940000154186.a.r.f #22	ENSGT00530000063867.b.d #23	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a #27	ENSGT00940000156841.a.b.e #28	ENSGT00940000156327.l.p.a #30	ENSGT00390000009597.d.e.a #31	ENSGT00940000156530.c.`b.b.g.a #35	ENSGT00390000004284.f.f #36	ENSGT00390000012248.i	ENSGT00940000170452	ENSGT00390000007046.a.e.a	ENSGT00940000162838.g.a.c.a	ENSGT00390000014687.c	ENSGT00390000004881.ac.b	ENSGT00940000156461.o.a
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00940000166495.d	ENSGT00390000007529.c	ENSGT00550000074956.e #8	ENSGT00940000157824.i.a.db.b #7	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #7	ENSGT00940000153408.B.s.b.n	ENSGT00940000158659.c	ENSGT00390000012029.hb #9	ENSGT00940000155345.r.b #10	ENSGT00940000161234.d.b.b #14	ENSGT00530000063410.a.q.b.c #17	ENSGT00940000153464.B.z.a.h #18	ENSGT00390000000583.a #19	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##20	ENSGT00940000154186.a.r.f #22	ENSGT00530000063867.b.d #23	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a #27	ENSGT00940000156841.a.b.e #28	ENSGT00940000156327.l.p.a #30	ENSGT00390000009597.d.e.a #31	ENSGT00940000156530.c.`b.b.g.a #35	ENSGT00390000004284.f.f #36	ENSGT00390000012248.i	ENSGT00940000170452	ENSGT00390000007046.a.e.a	ENSGT00940000162838.g.a.c.a	ENSGT00390000014687.c	ENSGT00390000004881.ac.b	ENSGT00940000156461.o.a
Coho salmon	MODERN SPECIES	12	ENSOKIG00005026590	ENSOKIG00005024950	pus10 (ENSOKIG00005024865)	cct4 (ENSOKIG00005024618) #8	ENSOKIG00005024587 #7	ENSOKIG00005024580 #7	ENSOKIG00005024422	USP34 (ENSOKIG00005023249)	commd1 (ENSOKIG00005023193) #9	b3gnt2a (ENSOKIG00005023184) #10	OTX1 (ENSOKIG00005023176) #14	MDH1 (ENSOKIG00005023137) #17	UGP2 (ENSOKIG00005022462) #18	VPS54 (ENSOKIG00005020639) #19	ENSOKIG00005020548 ##20	AFTPH (ENSOKIG00005020534) #22	sertad2b (ENSOKIG00005020528) #23	RAB1B (ENSOKIG00005020521)	ACTR2 (ENSOKIG00005020367) #27	SPRED2 (ENSOKIG00005020341) #28	MEIS1 (ENSOKIG00005020265) #30	etaa1a (ENSOKIG00005020222) #31	PPP3R1 (ENSOKIG00005020178) #35	cnrip1a (ENSOKIG00005020161) #36	fbxo48 (ENSOKIG00005020152)	prokr1a (ENSOKIG00005020143)	snrpb2 (ENSOKIG00005020115)	ENSOKIG00005019978	NDUFAF5 (ENSOKIG00005019820)	ENSOKIG00005019787	ENSOKIG00005019773
Chinook salmon	MODERN SPECIES	25	ENSOTSG00005012868	pus10 (ENSOTSG00005016390)	cct4 (ENSOTSG00005016399) #8	ENSOTSG00005016455	ENSOTSG00005016456 #7	XPO1 (ENSOTSG00005016459)	USP34 (ENSOTSG00005016527)	ENSOTSG00005016550	commd1 (ENSOTSG00005016552) #9	b3gnt2a (ENSOTSG00005016554) #10	OTX1 (ENSOTSG00005016556) #14	MDH1 (ENSOTSG00005016559) #17	ugp2a (ENSOTSG00005016561) #18	vps54 (ENSOTSG00005016938) #19	ENSOTSG00005017663 ##20	aftpha (ENSOTSG00005017664) #22	ENSOTSG00005017665	sertad2b (ENSOTSG00005017666) #23	rab1ab (ENSOTSG00005017667)	ACTR2 (ENSOTSG00005017668) #27	SPRED2 (ENSOTSG00005017671) #28	meis1b (ENSOTSG00005017681) #30	etaa1a (ENSOTSG00005021779) #31	PPP3R1 (ENSOTSG00005021808) #35	cnrip1a (ENSOTSG00005021863) #36	fbxo48 (ENSOTSG00005021864)	prokr1a (ENSOTSG00005021865)	snrpb2 (ENSOTSG00005021873)	KIF16B (ENSOTSG00005021886)	ndufaf5 (ENSOTSG00005021890)	esf1 (ENSOTSG00005021977)
Rainbow trout	MODERN SPECIES	4	ENSOMYG00000035654	ENSOMYG00000035758	cct4 (ENSOMYG00000035825) #8	ENSOMYG00000035913 #7	ENSOMYG00000035915 #7	XPO1 (ENSOMYG00000035963)	USP34 (ENSOMYG00000036212)	commd1 (ENSOMYG00000036577) #9	ENSOMYG00000052475	b3gnt2a (ENSOMYG00000036592) #10	OTX1 (ENSOMYG00000036609) #14	MDH1 (ENSOMYG00000036635) #17	UGP2 (ENSOMYG00000036702) #18	VPS54 (ENSOMYG00000036941) #19	ENSOMYG00000037389 ##20	AFTPH (ENSOMYG00000037408) #22	ENSOMYG00000037421	SERTAD2 (ENSOMYG00000037427) #23	ENSOMYG00000059668	ENSOMYG00000037436	ACTR2 (ENSOMYG00000037471) #27	SPRED2 (ENSOMYG00000037493) #28	MEIS1 (ENSOMYG00000037531) #30	etaa1a (ENSOMYG00000037561) #31	PPP3R1 (ENSOMYG00000037628) #35	cnrip1a (ENSOMYG00000037698) #36	fbxo48 (ENSOMYG00000037703)	ENSOMYG00000037708	snrpb2 (ENSOMYG00000037727)	ENSOMYG00000037879	ENSOMYG00000037978
Huchen	MODERN SPECIES	240		ENSHHUG00000043635	ENSHHUG00000043623	commd1 (ENSHHUG00000043622) #9	B3GNT2 (ENSHHUG00000043619) #10	ENSHHUG00000043615	otx2a (ENSHHUG00000043609)	mdh1aa (ENSHHUG00000043462) #17	ENSHHUG00000043460	ugp2a (ENSHHUG00000043434) #18	vps54 (ENSHHUG00000043428) #19	ENSHHUG00000043417 ##20	rpl9 (ENSHHUG00000043410)	LGALSL (ENSHHUG00000043405) #21	ENSHHUG00000043403	aftpha (ENSHHUG00000043393) #22	sertad2b (ENSHHUG00000043391) #23	rab1ab (ENSHHUG00000043386)	ACTR2 (ENSHHUG00000043267) #27	SPRED2 (ENSHHUG00000043253) #28	meis1b (ENSHHUG00000043203) #30	ENSHHUG00000043187 #31	PPP3R1 (ENSHHUG00000043141) #35	cnrip1a (ENSHHUG00000043133) #36	fbxo48 (ENSHHUG00000043132)	ENSHHUG00000043131	ENSHHUG00000043122	ENSHHUG00000043111	KIF16B (ENSHHUG00000043069)	ndufaf5 (ENSHHUG00000043066)	esf1 (ENSHHUG00000043060)
Northern pike	MODERN SPECIES	8	cct4 (ENSELUG00000012818) #8	ENSELUG00000027408	ENSELUG00000012751 #7	XPO1 (ENSELUG00000012707)	USP34 (ENSELUG00000001065)	ENSELUG00000012557	commd1 (ENSELUG00000012544) #9	b3gnt2a (ENSELUG00000012534) #10	ENSELUG00000012525	otx2a (ENSELUG00000034038)	mdh1aa (ENSELUG00000012493) #17	ugp2a (ENSELUG00000012451) #18	vps54 (ENSELUG00000012386) #19	ENSELUG00000012297 ##20	ENSELUG00000012197	aftpha (ENSELUG00000012264) #22	sertad2b (ENSELUG00000000448) #23	rab1ab (ENSELUG00000012166)	ACTR2 (ENSELUG00000001618) #27	SPRED2 (ENSELUG00000012081) #28	meis1b (ENSELUG00000012000) #30	ENSELUG00000011957 #31	ppp3r1a (ENSELUG00000011909) #35	cnrip1a (ENSELUG00000028977) #36	fbxo48 (ENSELUG00000011861)	ENSELUG00000030123	ENSELUG00000033337	prokr1a (ENSELUG00000011801)	snrpb2 (ENSELUG00000011788)	KIF16B (ENSELUG00000011722)	ENSELUG00000025581
Otomorpha	ANCESTRAL SPECIES	102												ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT01100000265091	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b.a #23	ENSGT00940000155078.a.b.a.b	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00940000159781.b	ENSGT00940000156644.e.a	ENSGT00390000003512.r	ENSGT00940000156048.e.b.b	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991
Clupeiformes	ANCESTRAL SPECIES	228													ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00940000159781.b	ENSGT00940000156644.e.a	ENSGT00390000003512.r	ENSGT00940000156048.e.b.a.e	ENSGT00390000011529	ENSGT00940000165109	ENSGT00940000157908.h	ENSGT00940000157560.d.a	ENSGT00950000182772.A.b	ENSGT00940000163836.a
Denticle herring	MODERN SPECIES	13	GPR139 (ENSDCDG00000027311)	si:ch211-202h22.8 (ENSDCDG00000027312)	tekt4 (ENSDCDG00000027315)	ENSDCDG00000027316	ENSDCDG00000027326	TSC2 (ENSDCDG00000027385)	NTHL1 (ENSDCDG00000031283)	NHERF2 (ENSDCDG00000031293)	TNPO2 (ENSDCDG00000031306)	rln3b (ENSDCDG00000031382)	RFX1 (ENSDCDG00000031412)	DCAF15 (ENSDCDG00000031736)	vps54 (ENSDCDG00000031751) #19	ENSDCDG00000031925 ##20	lgalsla (ENSDCDG00000031927) #21	aftpha (ENSDCDG00000031930) #22	cdc25d (ENSDCDG00000031935)	pi4k2a (ENSDCDG00000031949)	ENSDCDG00000031984	ENSDCDG00000031986	zfyve27 (ENSDCDG00000000220)	golga7ba (ENSDCDG00000000246)	mfng (ENSDCDG00000000265)	ENSDCDG00000000273	ELFN2 (ENSDCDG00000000293)	lgals2b (ENSDCDG00000000304)	ENSDCDG00000000316	ADAP1 (ENSDCDG00000000361)	CACNA1I (ENSDCDG00000000418)	ENSDCDG00000000434	fam83fb (ENSDCDG00000000435)
Atlantic herring	MODERN SPECIES	18	pgam1b (ENSCHAG00000010262)	pi4k2a (ENSCHAG00000010291)	ENSCHAG00000010349	ENSCHAG00000010367	zgc:171482 (ENSCHAG00000010390)	zfyve27 (ENSCHAG00000010413)	golga7ba (ENSCHAG00000010531)	ENSCHAG00000010601	mis12 (ENSCHAG00000010606)	ENSCHAG00000010620	ENSCHAG00000010630	sumf2 (ENSCHAG00000010633)	cct6a (ENSCHAG00000010792)	vps54 (ENSCHAG00000011092) #19	ENSCHAG00000012014 ##20	aftpha (ENSCHAG00000012103) #22	mb (ENSCHAG00000012126)	pane1 (ENSCHAG00000012136)	smdt1b (ENSCHAG00000012144)	ENSCHAG00000012152	dla (ENSCHAG00000012220)	RHOU (ENSCHAG00000012258)	ENSCHAG00000012301	ACTA1 (ENSCHAG00000012335)	nup133 (ENSCHAG00000012386)	ENSCHAG00000014828	soul4 (ENSCHAG00000014856)	ptk7a (ENSCHAG00000014892)	ENSCHAG00000016388	ENSCHAG00000018249	ENSCHAG00000018311
Otophysi	ANCESTRAL SPECIES	28	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b	ENSGT00510000049872	ENSGT00390000013298	ENSGT00390000000134.a.f	ENSGT00390000013726.d	ENSGT00530000063711.b	ENSGT00940000156051.c.b	ENSGT00940000159428.e.a	ENSGT00940000161004	ENSGT00390000011740	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b.a #23	ENSGT00940000155078.a.b.a.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00940000177102	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759	ENSGT00940000166147	ENSGT00530000063936.a.a	ENSGT00940000166522	ENSGT00390000004692.d.a.m.a
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00950000182926.b.d.a.a.a.a	ENSGT00940000166659	ENSGT00390000010434.b	ENSGT00510000049872	ENSGT00390000013298	ENSGT00390000000134.a.f	ENSGT00390000013726.d	ENSGT00530000063711.b	ENSGT00940000156051.c.b	ENSGT00940000159428.e.a	ENSGT00940000161004	ENSGT00390000011740	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00940000177082	ENSGT00940000178911	ENSGT00940000155078.a.b.a.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000007688.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT00940000164566.a	ENSGT00950000182886.a.a.b.s	ENSGT00390000018759
Characiphysae_b	ANCESTRAL SPECIES	49	ENSGT00950000182926.b.d.a.a.a.a.i	ENSGT00940000166659	ENSGT00390000010434.b	ENSGT00510000049872	ENSGT00390000013298	ENSGT00390000000134.a.f	ENSGT00390000013726.d	ENSGT00530000063711.b	ENSGT00940000156051.c.b	ENSGT00940000159428.e.a	ENSGT00940000161004	ENSGT00390000011740	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00940000178911	ENSGT00940000155078.a.b.a.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000007688.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01010000222294.c.b.a.a.a.a	ENSGT01100000263535.b.b
Characoidei	ANCESTRAL SPECIES	54	ENSGT00950000182926.b.d.a.a.a.a.i	ENSGT00940000166659	ENSGT00390000010434.b	ENSGT00510000049872	ENSGT00390000013298	ENSGT00390000000134.a.f	ENSGT00390000013726.d	ENSGT00530000063711.b	ENSGT00940000156051.c.b	ENSGT00940000159428.e.a	ENSGT00940000161004	ENSGT00390000011740	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00940000178911	ENSGT00940000155078.a.b.a.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00950000183135.A.b	ENSGT00390000007688.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263541.a.a.a.b.b.a.c.c.b	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01010000222294.c.b.a.a.a.a	ENSGT01100000263535.b.b
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	3	pgam1b (ENSAMXG00000011124)	cdc25d (ENSAMXG00000032311)	pi4k2a (ENSAMXG00000011178)	ENSAMXG00000024931	zfyve27 (ENSAMXG00000040197)	golga7ba (ENSAMXG00000032870)	crtac1a (ENSAMXG00000011545)	ENSAMXG00000011674	khsrp (ENSAMXG00000036582)	ENSAMXG00000011724	ENSAMXG00000011734	ENSAMXG00000030674	vps54 (ENSAMXG00000011759) #19	ENSAMXG00000038207 ##20	lgalsla (ENSAMXG00000032614) #21	aftpha (ENSAMXG00000033598) #22	ENSAMXG00000030121 #22	ENSAMXG00000029475	ENSAMXG00000034850 #26	mb (ENSAMXG00000030396)	pane1 (ENSAMXG00000036381)	zgc:158803 (ENSAMXG00000042216)	mri1 (ENSAMXG00000011982)	CC2D1A (ENSAMXG00000012041)	ENSAMXG00000034714	ENSAMXG00000012102	si:ch211-286b5.5 (ENSAMXG00000012105)	ENSAMXG00000012113	ENSAMXG00000035878	ENSAMXG00000029205	ENSAMXG00000007630
Mexicana tetra	MODERN SPECIES	3	cdc25d (ENSAMXG00000032311)	pi4k2a (ENSAMXG00000011178)	ENSAMXG00000024931	zfyve27 (ENSAMXG00000040197)	golga7ba (ENSAMXG00000032870)	crtac1a (ENSAMXG00000011545)	ENSAMXG00000011674	khsrp (ENSAMXG00000036582)	ENSAMXG00000011724	ENSAMXG00000011734	ENSAMXG00000030674	vps54 (ENSAMXG00000011759) #19	ENSAMXG00000038207 ##20	lgalsla (ENSAMXG00000032614) #21	aftpha (ENSAMXG00000033598) #22	ENSAMXG00000030121 #22	ENSAMXG00000029475	ENSAMXG00000034850 #26	mb (ENSAMXG00000030396)	pane1 (ENSAMXG00000036381)	zgc:158803 (ENSAMXG00000042216)	mri1 (ENSAMXG00000011982)	CC2D1A (ENSAMXG00000012041)	ENSAMXG00000034714	ENSAMXG00000012102	si:ch211-286b5.5 (ENSAMXG00000012105)	ENSAMXG00000012113	ENSAMXG00000035878	ENSAMXG00000029205	ENSAMXG00000007630	ENSAMXG00000030599
Red-bellied piranha	MODERN SPECIES	206	ENSPNAG00000011836	pi4k2a (ENSPNAG00000005075)	ENSPNAG00000011880	ENSPNAG00000001989	zfyve27 (ENSPNAG00000002003)	golga7ba (ENSPNAG00000011927)	crtac1a (ENSPNAG00000002039)	ENSPNAG00000002051	khsrp (ENSPNAG00000012026)	SLC25A23 (ENSPNAG00000012055)	ENSPNAG00000002085	zgc:136864 (ENSPNAG00000012075)	vps54 (ENSPNAG00000012220) #19	ENSPNAG00000012347 ##20	lgalsla (ENSPNAG00000012375) #21	aftpha (ENSPNAG00000002239) #22	ENSPNAG00000012418	nanos3 (ENSPNAG00000002259)	ENSPNAG00000012488	mri1 (ENSPNAG00000012506)	mb (ENSPNAG00000002280)	rab1aa (ENSPNAG00000012540)	ENSPNAG00000012560
Channel catfish	MODERN SPECIES	18	ENSIPUG00000007724	PGAM1 (ENSIPUG00000007742)	pi4k2a (ENSIPUG00000007771)	ENSIPUG00000007798	zfyve27 (ENSIPUG00000007823)	GOLGA7B (ENSIPUG00000007951)	ENSIPUG00000007991	ENSIPUG00000008001	khsrp (ENSIPUG00000008034)	SLC25A23 (ENSIPUG00000008144)	ENSIPUG00000008372	c26h19orf53 (ENSIPUG00000008390)	VPS54 (ENSIPUG00000008415) #19	ENSIPUG00000008563 ##20	grpb (ENSIPUG00000008575) #21	aftph (ENSIPUG00000008613) #22	ENSIPUG00000008625	ENSIPUG00000008638	rab1a (ENSIPUG00000008650)	mb (ENSIPUG00000008680)	pane1 (ENSIPUG00000008705)	LUC7L2 (ENSIPUG00000008734)	mri1 (ENSIPUG00000008756)	ENSIPUG00000008803	nanos3 (ENSIPUG00000008857)	ENSIPUG00000008866	si:ch211-286b5.5 (ENSIPUG00000008882)	ENSIPUG00000008897	ENSIPUG00000008934	ENSIPUG00000008956	ENSIPUG00000009000
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00940000166659	ENSGT00390000010434.b	ENSGT00510000049872	ENSGT01030000234958	ENSGT00390000013298	ENSGT00390000000134.a.f	ENSGT00390000013726.d	ENSGT00530000063711.b	ENSGT00940000156051.c.b	ENSGT00940000159428.e.a	ENSGT00940000161004	ENSGT00390000011740	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.a.b ##20	ENSGT00940000155337.`b #21	ENSGT00940000154186.a.r #22	ENSGT00530000063867.b.a #23	ENSGT00940000154958 #26	ENSGT00940000178911	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000013732	ENSGT00390000009595.b	ENSGT00990000210012	ENSGT00950000183135.A.b	ENSGT00390000007688.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01010000222294.c.b.a.b.a.b.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	139	ENSGT00530000063711.b.i.b	ENSGT00940000156051.c.b.a	ENSGT00940000159428.e.a.b	ENSGT01030000234958	ENSGT00390000013298.c	ENSGT00390000000134.a.f.a	ENSGT00390000013726.d	ENSGT00530000063711.b.i.a	ENSGT00940000156051.c.b.b	ENSGT00940000159428.e.a.a	ENSGT00940000161004	ENSGT00390000011740.g	ENSGT00390000000583.f #19	ENSGT00950000183050.b.b.b.a.a.a.b.g ##20	ENSGT00940000155337.`b.d #21	ENSGT00940000154186.a.r.i #22	ENSGT00530000063867.b.a #23	ENSGT00940000154958 #26	ENSGT00940000155078.a.b.a.a.b	ENSGT00940000160809.c	ENSGT00950000183213.a.a.a.g	ENSGT00390000013732.j	ENSGT00390000009595.b.d	ENSGT00940000177102	ENSGT01030000235252.d.b	ENSGT01030000235252.d.a
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	211	ENSGT00500000044955	ENSGT00390000015287.b.a.a	ENSGT00940000166659.i.b	ENSGT00940000166659.j	ENSGT00390000010434.b.n	ENSGT00730000112219	ENSGT00390000013298.d	ENSGT00390000000134.a.f.b	ENSGT00940000156051.c.b.a	ENSGT00940000159428.e.a.b	ENSGT00940000161004	ENSGT00390000011740.g	ENSGT00390000000583.f #19	ENSGT00950000183050.b.b.b.a.a.a.b.g ##20	ENSGT00940000155337.`b.d #21	ENSGT00940000154186.a.r.i.a #22	ENSGT00530000063867.b.a #23	ENSGT00940000154958 #26	ENSGT00940000155078.a.b.a.a.b	ENSGT00940000160809.c	ENSGT00950000183213.a.a.a.g	ENSGT00390000013732.j	ENSGT00390000009595.b.d	ENSGT00950000183135.A.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01010000222294.c.b.a.b.a.b.a.b.a	ENSGT00940000163334.d.l.b	ENSGT00940000164566.a.e	ENSGT00950000182886.a.a.b.s.g	ENSGT00390000018759.r
Golden-line barbel	MODERN SPECIES	180	gprc5bb (ENSSGRG00000042059)	ENSSGRG00000042057	exosc1 (ENSSGRG00000042009)	cdc25d (ENSSGRG00000042007)	ENSSGRG00000042006	zfyve27 (ENSSGRG00000042004)	golga7ba (ENSSGRG00000042002)	khsrp (ENSSGRG00000041861)	ENSSGRG00000041593	ENSSGRG00000041589	zgc:136864 (ENSSGRG00000041588)	vps54 (ENSSGRG00000041583) #19	ENSSGRG00000041582 ##20	lgalsla (ENSSGRG00000041580) #21	ENSSGRG00000041579	aftpha (ENSSGRG00000041455) #22	ENSSGRG00000041453 #23	RAB1B (ENSSGRG00000041286)	mb (ENSSGRG00000041283)	zgc:158803 (ENSSGRG00000041281)	mri1 (ENSSGRG00000041277)	CC2D1A (ENSSGRG00000041257)	nanos3 (ENSSGRG00000041255)	si:ch211-286b5.5 (ENSSGRG00000041252)	ENSSGRG00000041251	ENSSGRG00000041249	ENSSGRG00000041247	ENSSGRG00000041240	ENSSGRG00000041234	ENSSGRG00000041232	dnajb1b (ENSSGRG00000041226)
Common carp reference	MODERN SPECIES	22	si:ch211-202h22.8 (ENSCCRG00000059845)	gprc5bb (ENSCCRG00000055467)	exosc1 (ENSCCRG00000024520)	pgam1b (ENSCCRG00000065548)	ENSCCRG00000081744	cdc25d (ENSCCRG00000024507)	pi4k2a (ENSCCRG00000024458)	ENSCCRG00000063636	zfyve27 (ENSCCRG00000031705)	golga7ba (ENSCCRG00000061429)	khsrp (ENSCCRG00000002491)	ENSCCRG00000021673	vps54 (ENSCCRG00000021668) #19	ENSCCRG00000077908 ##20	lgalsla (ENSCCRG00000057927) #21	aftpha (ENSCCRG00000068040) #22	ENSCCRG00000068299 #23	ENSCCRG00000070586 #26	mb (ENSCCRG00000028699)	ENSCCRG00000000498	ENSCCRG00000074250	ENSCCRG00000079013	ENSCCRG00000000444	ENSCCRG00000058943	ENSCCRG00000039598	ENSCCRG00000036319	ENSCCRG00000058282	ENSCCRG00000009903	ENSCCRG00000060402	ENSCCRG00000000042	ENSCCRG00000000041
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00390000010434.b.m	ENSGT00510000049872	ENSGT01030000234958	ENSGT00390000013298.c	ENSGT00390000000134.a.f.a	ENSGT00390000013726.d	ENSGT00530000063711.b.i.a	ENSGT00940000156051.c.b.b	ENSGT00940000159428.e.a.a	ENSGT00390000011740.h	ENSGT00390000000583.e #19	ENSGT00950000183050.b.b.b.a.a.a.b.h ##20	ENSGT00940000155337.`b.c #21	ENSGT00940000154186.a.r.j #22	ENSGT01100000265091	ENSGT00940000154186.a.r.i.b #22	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000160809.d	ENSGT00390000017504	ENSGT00950000183213.a.a.a.h	ENSGT00390000013732.i	ENSGT00390000009595.b.c	ENSGT00990000210012
Golden-line barbel	MODERN SPECIES	251	pgam1b (ENSSGRG00000025996)	cdc25d (ENSSGRG00000025995)	pi4k2a (ENSSGRG00000025968)	ENSSGRG00000025966	zfyve27 (ENSSGRG00000025965)	golga7ba (ENSSGRG00000025963)	crtac1a (ENSSGRG00000025865)	ENSSGRG00000025859	khsrp (ENSSGRG00000025834)	ENSSGRG00000025730	zgc:136864 (ENSSGRG00000025726)	vps54 (ENSSGRG00000025530) #19	ENSSGRG00000025524 ##20	lgalsla (ENSSGRG00000025523) #21	ENSSGRG00000025521	ENSSGRG00000025518 #22	rab1aa (ENSSGRG00000025424)	mb (ENSSGRG00000025422)	pane1 (ENSSGRG00000025421)	zgc:158803 (ENSSGRG00000025393)	mri1 (ENSSGRG00000025392)	CC2D1A (ENSSGRG00000025390)	ENSSGRG00000025386	nanos3 (ENSSGRG00000025384)	si:ch211-286b5.5 (ENSSGRG00000025382)	ENSSGRG00000025379	ENSSGRG00000025377
Goldfish	MODERN SPECIES		gprc5bb (ENSCARG00000000823)	exosc1 (ENSCARG00000000811)	pgam1b (ENSCARG00000000796)	cdc25d (ENSCARG00000000785)	pi4k2a (ENSCARG00000000764)	ENSCARG00000000753	zfyve27 (ENSCARG00000000715)	golga7ba (ENSCARG00000000685)	ENSCARG00000000675	khsrp (ENSCARG00000000602)	ENSCARG00000000526	zgc:136864 (ENSCARG00000000495)	vps54 (ENSCARG00000000416) #19	ENSCARG00000000354 ##20	lgalsla (ENSCARG00000000343) #21	aftpha (ENSCARG00000000324) #22	ENSCARG00000000283 #23	ENSCARG00000000270	ENSCARG00000000235	mb (ENSCARG00000000233)	zgc:158803 (ENSCARG00000000208)	mri1 (ENSCARG00000000173)	CC2D1A (ENSCARG00000000158)	ENSCARG00000000137	ENSCARG00000000126	ENSCARG00000000115	ENSCARG00000000111	ENSCARG00000000107	ENSCARG00000000105	ENSCARG00000019659	ENSCARG00000019653
Cyprininae	ANCESTRAL SPECIES	361												ENSGT00390000011740.h	ENSGT00390000000583.e #19	ENSGT00950000183050.b.b.b.a.a.a.b.h ##20	ENSGT00940000155337.`b.c #21	ENSGT00940000154186.a.r.j #22	ENSGT00940000178911	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000160809.d	ENSGT00390000017504	ENSGT00950000183213.a.a.a.h	ENSGT00390000013732.i	ENSGT00390000009595.b.c	ENSGT00990000210012	ENSGT00950000183135.A.b	ENSGT01100000263525.a.b.a.b.b.a	ENSGT01010000222294.c.b.a.b.a.b.a.a.b	ENSGT01010000222294.c.b.a.b.a.b.a.b.a	ENSGT00940000163334.d.l.b	ENSGT00940000164566.a.e	ENSGT00950000182886.a.a.b.s.g
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00950000182926.b.d.a.a.a.a.h	ENSGT00940000166659.i.a	ENSGT00390000010434.b.m	ENSGT00510000049872	ENSGT01030000234958	ENSGT00390000013298.c	ENSGT00390000000134.a.f.a	ENSGT00390000013726.d	ENSGT00530000063711.b.i.a	ENSGT00940000156051.c.b.b	ENSGT00940000159428.e.a.a	ENSGT00390000011740.h	ENSGT00390000000583.e #19	ENSGT00950000183050.b.b.b.a.a.a.b.h ##20	ENSGT00940000155337.`b.c #21	ENSGT00940000154186.a.r.j #22	ENSGT01100000265091	ENSGT00940000154186.a.r.i.b #22	ENSGT00940000155078.a.b.a.a.a	ENSGT00940000160809.d	ENSGT00390000017504	ENSGT00950000183213.a.a.a.h	ENSGT00390000013732.i	ENSGT00390000009595.b.c	ENSGT00990000210012
Common carp reference	MODERN SPECIES	27	pi4k2a (ENSCCRG00000031717)	ENSCCRG00000063326	ENSCCRG00000003859	ENSCCRG00000024682	zfyve27 (ENSCCRG00000023777)	golga7ba (ENSCCRG00000076611)	crtac1a (ENSCCRG00000023744)	ENSCCRG00000023741	khsrp (ENSCCRG00000023737)	ENSCCRG00000023699	ENSCCRG00000023693	ENSCCRG00000023691	vps54 (ENSCCRG00000021698) #19	ENSCCRG00000005752 ##20	lgalsla (ENSCCRG00000005755) #21	aftpha (ENSCCRG00000005761) #22	ENSCCRG00000028890 #26	ENSCCRG00000064146	mb (ENSCCRG00000005769)	pane1 (ENSCCRG00000063559)	zgc:158803 (ENSCCRG00000000658)	mri1 (ENSCCRG00000062632)	ENSCCRG00000029782	si:ch211-286b5.5 (ENSCCRG00000060149)	ENSCCRG00000034938	ENSCCRG00000034935	ENSCCRG00000009892	ENSCCRG00000009894	ENSCCRG00000039587	ENSCCRG00000074442	ENSCCRG00000009918
Goldfish	MODERN SPECIES	1251			ENSCARG00000039006	ENSCARG00000039041	ENSCARG00000039049	golga7ba (ENSCARG00000039058)	crtac1a (ENSCARG00000039117)	ENSCARG00000039398	khsrp (ENSCARG00000039473)	ENSCARG00000040525	ENSCARG00000040812	vps54 (ENSCARG00000040856) #19	ENSCARG00000041200 ##20	ENSCARG00000041211	lgalsla (ENSCARG00000041223) #21	aftpha (ENSCARG00000041248) #22	ENSCARG00000041258	rab1aa (ENSCARG00000041286)	mb (ENSCARG00000041292)	pane1 (ENSCARG00000041307)	zgc:158803 (ENSCARG00000041369)	mri1 (ENSCARG00000041547)	ENSCARG00000042107	nanos3 (ENSCARG00000042137)	si:ch211-286b5.5 (ENSCARG00000042150)	ENSCARG00000042161	ENSCARG00000042270	ENSCARG00000042195	ENSCARG00000042283	ENSCARG00000042292	ENSCARG00000042316
Zebrafish	MODERN SPECIES		ENSDARG00000096214	ENSDARG00000091320	ENSDARG00000094782	ENSDARG00000069264	zfyve27 (ENSDARG00000059835)	golga7ba (ENSDARG00000036295)	crtac1a (ENSDARG00000059826)	ENSDARG00000089243	khsrp (ENSDARG00000026489)	ENSDARG00000005690	ENSDARG00000028276	vps54 (ENSDARG00000102960) #19	zgc:136864 (ENSDARG00000059816)	ENSDARG00000091592 ##20	lgalsla (ENSDARG00000059060) #21	aftpha (ENSDARG00000069249) #22	ENSDARG00000093412 #23	rab1aa (ENSDARG00000052263)	mb (ENSDARG00000031952)	pane1 (ENSDARG00000024681)	zgc:158803 (ENSDARG00000019765)	mri1 (ENSDARG00000075754)	CC2D1A (ENSDARG00000036281)	ENSDARG00000096514	nanos3 (ENSDARG00000068255)	ENSDARG00000089765	si:ch211-286b5.5 (ENSDARG00000096661)	ENSDARG00000110697	ENSDARG00000096576	zgc:172106 (ENSDARG00000017984)	ENSDARG00000096625
Osteoglossiformes	ANCESTRAL SPECIES	94	ENSGT00940000158659	ENSGT00940000153408.B	ENSGT00940000157824 #7	ENSGT00940000178862	ENSGT00550000074956 #8	ENSGT00390000012029 #9	ENSGT00940000155345.p #10	ENSGT01100000263601	ENSGT00940000161234.f #14	ENSGT00530000063410.a #17	ENSGT00940000153464.B.z.a.a #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.b.a.a.b.a ##20	ENSGT00940000155337.`b.a #21	ENSGT00940000177082	ENSGT00940000154186.a.r #22
P. kingsleyae	MODERN SPECIES	21	pus10 (ENSPKIG00000005909)	USP34 (ENSPKIG00000005774)	XPO1 (ENSPKIG00000005688)	FAM161A (ENSPKIG00000005663) #7	cct4 (ENSPKIG00000005618) #8	commd1 (ENSPKIG00000005530) #9	B3GNT2 (ENSPKIG00000005518) #10	ENSPKIG00000005498	OTX1 (ENSPKIG00000005463) #14	MDH1 (ENSPKIG00000005390) #17	ugp2a (ENSPKIG00000005328) #18	vps54 (ENSPKIG00000005241) #19	ENSPKIG00000005190 ##20	lgalsla (ENSPKIG00000005170) #21	ENSPKIG00000005147	aftpha (ENSPKIG00000005133) #22	sertad2b (ENSPKIG00000005118) #23	SLC1A4 (ENSPKIG00000005084) #24	ENSPKIG00000005049	actr2a (ENSPKIG00000005014) #27	spred2b (ENSPKIG00000004984) #28	meis1b (ENSPKIG00000004887) #30	ENSPKIG00000004813 #31	pno1 (ENSPKIG00000004780) #34	PPP3R1 (ENSPKIG00000004748) #35	PLEK (ENSPKIG00000004709) #37	fbxo48 (ENSPKIG00000004681)	ENSPKIG00000004664	APLF (ENSPKIG00000004644)	BFSP1 (ENSPKIG00000004624)	ENSPKIG00000004441
Asian bonytongue	MODERN SPECIES	7	USP34 (ENSSFOG00015001953)	XPO1 (ENSSFOG00015001881)	ENSSFOG00015029812 #7	ENSSFOG00015001847	cct4 (ENSSFOG00015001765) #8	commd1 (ENSSFOG00015001751) #9	B3GNT2 (ENSSFOG00015001747) #10	ENSSFOG00015001741	OTX1 (ENSSFOG00015001725) #14	MDH1 (ENSSFOG00015001676) #17	ugp2a (ENSSFOG00015001656) #18	vps54 (ENSSFOG00015001545) #19	ENSSFOG00015031456 ##20	lgalsla (ENSSFOG00015001472) #21	ENSSFOG00015001442	aftpha (ENSSFOG00015001420) #22	sertad2b (ENSSFOG00015024685) #23	slc1a4 (ENSSFOG00015001340) #24	rab1ab (ENSSFOG00015029420)	ACTR2 (ENSSFOG00015001243) #27	spred2b (ENSSFOG00015001205) #28	meis1b (ENSSFOG00015001129) #30	ENSSFOG00015001088 #31	pno1 (ENSSFOG00015001066) #34	ppp3r1a (ENSSFOG00015001039) #35	PLEK (ENSSFOG00015001005) #37	fbxo48 (ENSSFOG00015030152)	APLF (ENSSFOG00015000991)	prokr1b (ENSSFOG00015000967)	BFSP1 (ENSSFOG00015000902)	pcsk2 (ENSSFOG00015000888)
Spotted gar	MODERN SPECIES	654	ENSLOCG00000016093	FAM161A (ENSLOCG00000016091) #7	cct4 (ENSLOCG00000016088) #8	commd1 (ENSLOCG00000016086) #9	b3gnt2a (ENSLOCG00000016084) #10	ENSLOCG00000016082	EHBP1 (ENSLOCG00000016075) #13	otx1 (ENSLOCG00000016074) #14	WDPCP (ENSLOCG00000016068) #16	mdh1ab (ENSLOCG00000016063) #17	ugp2a (ENSLOCG00000016059) #18	vps54 (ENSLOCG00000016056) #19	ENSLOCG00000016053 ##20	ENSLOCG00000016051	lgalslb (ENSLOCG00000016049) #21	AFTPH (ENSLOCG00000016046) #22	sertad2b (ENSLOCG00000017361) #23	slc1a4 (ENSLOCG00000016041) #24	cep68 (ENSLOCG00000016038) #25	rab1ab (ENSLOCG00000016037)	zgc:153169 (ENSLOCG00000016036)	actr2a (ENSLOCG00000016032) #27	spred2b (ENSLOCG00000016028) #28	meis1b (ENSLOCG00000016026) #30	ENSLOCG00000016025 #31	c1d (ENSLOCG00000016024) #32	ENSLOCG00000016022	dnaaf10 (ENSLOCG00000016020) #33	pno1 (ENSLOCG00000016017) #34	ppp3r1a (ENSLOCG00000016015) #35	cnrip1a (ENSLOCG00000016014) #36
Elephant shark	MODERN SPECIES	2178															ENSCMIG00000014632	AFTPH (ENSCMIG00000014628) #22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154186.a #22
Hagfish	MODERN SPECIES	1371	ENSEBUG00000009726	ENSEBUG00000005042	ENSEBUG00000014334	ENSEBUG00000001189	ENSEBUG00000011380	ENSEBUG00000001559	ATL2 (ENSEBUG00000015077)	arf6a (ENSEBUG00000004811)	ENSEBUG00000003580	ENSEBUG00000015856	sos2 (ENSEBUG00000003137)	ENSEBUG00000016053	ENSEBUG00000003133	ENSEBUG00000013719	ENSEBUG00000003495	ENSEBUG00000007625 #22	ENSEBUG00000014486
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154186.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154186.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154186.b ##22
Sarcopterygii	ANCESTRAL SPECIES																	ENSGT00940000154186.b ##22
Tetrapoda	ANCESTRAL SPECIES	480															ENSGT00940000163336	ENSGT00940000154186.b ##22
Amniota	ANCESTRAL SPECIES	8	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Mammalia	ANCESTRAL SPECIES	16	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Theria	ANCESTRAL SPECIES	14	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00940000156067	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000156068.a	ENSGT00940000156386	ENSGT00390000003225	ENSGT00390000018781	ENSGT00390000016991	ENSGT00940000156288	ENSGT00940000154155	ENSGT00940000159536
Opossum	MODERN SPECIES		RD3L (ENSMODG00000028050)	TDRD9 (ENSMODG00000013609)	ASPG (ENSMODG00000013615)	ENSMODG00000013636	TMEM179 (ENSMODG00000013642)	ENSMODG00000048370	ENSMODG00000050866	INF2 (ENSMODG00000013660)	ADSS1 (ENSMODG00000013667)	SIVA1 (ENSMODG00000013672)	AKT1 (ENSMODG00000013693)	ENSMODG00000042982	CEP170B (ENSMODG00000013774)	PLD4 (ENSMODG00000013788)	ENSMODG00000042540	ENSMODG00000027908 ##22	HSPA4 (ENSMODG00000013823)	ZCCHC10 (ENSMODG00000013827)	LEAP2 (ENSMODG00000013847)	AFF4 (ENSMODG00000013842)	ENSMODG00000013849	GDF9 (ENSMODG00000048752)	SOWAHA (ENSMODG00000013874)	ENSMODG00000039421	ENSMODG00000013909	KIF3A (ENSMODG00000013930)	RAD50 (ENSMODG00000013947)	IL5 (ENSMODG00000013956)	IRF1 (ENSMODG00000013963)	ENSMODG00000013976	ENSMODG00000013979
Marsupialia_b	ANCESTRAL SPECIES	21	ENSGT00940000153463.a	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00940000156067	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000156068.a	ENSGT00940000156386	ENSGT00390000003225	ENSGT00390000018781	ENSGT00390000016991	ENSGT00940000156288	ENSGT00940000154155	ENSGT00940000159536
Diprotodontia	ANCESTRAL SPECIES	34	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00940000156067	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000156068.a	ENSGT00940000156386	ENSGT00390000003225	ENSGT00390000018781	ENSGT00390000016991	ENSGT00940000156288	ENSGT00940000154155	ENSGT00940000159536
Diprotodontia_a	ANCESTRAL SPECIES	33	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000016760.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00940000156067	ENSGT00730000111200	ENSGT00950000182974.a.a.b	ENSGT00390000013467	ENSGT00390000004029	ENSGT00940000159784	ENSGT00950000183003.a.a.a.a.b	ENSGT00940000156068.a	ENSGT00940000156386	ENSGT00390000003225	ENSGT00390000018781	ENSGT00390000016991	ENSGT00940000156288	ENSGT00940000154155	ENSGT00940000159536
Common wonbat	MODERN SPECIES	455	PPP1R13B (ENSVURG00010005071)	ENSVURG00010005115	TDRD9 (ENSVURG00010005150)	RD3L (ENSVURG00010005206)	ASPG (ENSVURG00010005231)	KIF26A (ENSVURG00010005300)	TMEM179 (ENSVURG00010005332)	ENSVURG00010005343	ENSVURG00010005353	ADSS1 (ENSVURG00010005386)	SIVA1 (ENSVURG00010005407)	AKT1 (ENSVURG00010005413)	ENSVURG00010005422	CEP170B (ENSVURG00010005438)	PLD4 (ENSVURG00010005479)	ENSVURG00010005508 ##22	HSPA4 (ENSVURG00010005522)	ZCCHC10 (ENSVURG00010005568)	AFF4 (ENSVURG00010005580)	LEAP2 (ENSVURG00010005589)	UQCRQ (ENSVURG00010005598)	GDF9 (ENSVURG00010005609)	SOWAHA (ENSVURG00010005648)	ENSVURG00010005660	KIF3A (ENSVURG00010005711)	ENSVURG00010005777	RAD50 (ENSVURG00010005808)	IL5 (ENSVURG00010005850)	IRF1 (ENSVURG00010005871)	ENSVURG00010005882	ENSVURG00010005895
koala	MODERN SPECIES	41																ENSPCIG00000018099 ##22	HSPA4 (ENSPCIG00000018100)	ZCCHC10 (ENSPCIG00000000173)	AFF4 (ENSPCIG00000000197)	ENSPCIG00000000228	ENSPCIG00000000300	GDF9 (ENSPCIG00000000319)	SOWAHA (ENSPCIG00000000331)	ENSPCIG00000000355	KIF3A (ENSPCIG00000000389)	ENSPCIG00000000419	RAD50 (ENSPCIG00000000437)	IL5 (ENSPCIG00000000474)	IRF1 (ENSPCIG00000000595)	ENSPCIG00000000632	ENSPCIG00000000667
Wallaby	MODERN SPECIES	4757																ENSMEUG00000012699 ##22	ENSMEUG00000012718
Tasmanian devil	MODERN SPECIES	1	RD3L (ENSSHAG00000014495)	TDRD9 (ENSSHAG00000013742)	ASPG (ENSSHAG00000012851)	KIF26A (ENSSHAG00000011581)	ENSSHAG00000026217	ENSSHAG00000027215	TMEM179 (ENSSHAG00000030269)	INF2 (ENSSHAG00000010889)	ADSS1 (ENSSHAG00000010303)	SIVA1 (ENSSHAG00000010175)	AKT1 (ENSSHAG00000008957)	ENSSHAG00000030413	CEP170B (ENSSHAG00000006663)	PLD4 (ENSSHAG00000006062)	ENSSHAG00000031853	ENSSHAG00000001671 ##22	ENSSHAG00000013815	ZCCHC10 (ENSSHAG00000027044)	AFF4 (ENSSHAG00000013198)	LEAP2 (ENSSHAG00000013151)	UQCRQ (ENSSHAG00000027678)	GDF9 (ENSSHAG00000012875)	SOWAHA (ENSSHAG00000025314)	ENSSHAG00000012403	KIF3A (ENSSHAG00000011952)	ENSSHAG00000027514	ENSSHAG00000010792	ENSSHAG00000028225	ENSSHAG00000009209	ENSSHAG00000023817	ENSSHAG00000021482
Eutheria	ANCESTRAL SPECIES	12	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296	ENSGT00390000003866.a.b	ENSGT00940000164671
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296	ENSGT00390000003866.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Suina	ANCESTRAL SPECIES	24	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000163076	ENSGT00940000162793
Pig	MODERN SPECIES	162	TDRD9 (ENSSSCG00000002552)	RD3L (ENSSSCG00000060746)	ASPG (ENSSSCG00000039553)	KIF26A (ENSSSCG00000035093)	ENSSSCG00000039825	TMEM179 (ENSSSCG00000039537)	ENSSSCG00000055777	ENSSSCG00000033720	ADSS1 (ENSSSCG00000037334)	SIVA1 (ENSSSCG00000031132)	AKT1 (ENSSSCG00000039139)	ZBTB42 (ENSSSCG00000052434)	CEP170B (ENSSSCG00000002558)	PLD4 (ENSSSCG00000002554)	ENSSSCG00000035669	CLBA1 (ENSSSCG00000040365) ##22	CDCA4 (ENSSSCG00000002559) ##23	ENSSSCG00000036892	JAG2 (ENSSSCG00000002555)	NUDT14 (ENSSSCG00000002557)	BRF1 (ENSSSCG00000031710)	BTBD6 (ENSSSCG00000035555)	PACS2 (ENSSSCG00000037671)	TEX22 (ENSSSCG00000036444)	MTA1 (ENSSSCG00000032544)	CRIP2 (ENSSSCG00000038713)	ENSSSCG00000037142	TEDC1 (ENSSSCG00000040089)	TMEM121 (ENSSSCG00000058170)	ENSSSCG00000053901	ENSSSCG00000056525
Chacoan peccary	MODERN SPECIES	878												ZBTB42 (ENSCWAG00000005644)	CEP170B (ENSCWAG00000005661)	PLD4 (ENSCWAG00000005699)	ENSCWAG00000005765	ENSCWAG00000005782 ##22	CDCA4 (ENSCWAG00000005817) ##23	GPR132 (ENSCWAG00000005830)	JAG2 (ENSCWAG00000005877)	NUDT14 (ENSCWAG00000006107)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b.k ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000016760.c.a.b	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b.k ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000016760.c.a.b	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b.k ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT01010000228353	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b.k ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Monodontidae	ANCESTRAL SPECIES	26	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT01010000228353	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a.m	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b.k ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Narwhal	MODERN SPECIES	308	RD3L (ENSMMNG00015014464)	ASPG (ENSMMNG00015014499)	KIF26A (ENSMMNG00015014549)	ENSMMNG00015014577	ENSMMNG00015014589	TMEM179 (ENSMMNG00015014610)	ENSMMNG00015014630	ENSMMNG00015014638	ADSS1 (ENSMMNG00015014657)	SIVA1 (ENSMMNG00015014699)	AKT1 (ENSMMNG00015014726)	ZBTB42 (ENSMMNG00015014738)	CEP170B (ENSMMNG00015014777)	PLD4 (ENSMMNG00015014809)	ENSMMNG00015014827	CLBA1 (ENSMMNG00015014838) ##22	ENSMMNG00015014854 ##23	ENSMMNG00015014862	JAG2 (ENSMMNG00015014947)	NUDT14 (ENSMMNG00015015068)	BRF1 (ENSMMNG00015015106)	BTBD6 (ENSMMNG00015015163)	PACS2 (ENSMMNG00015015205)	TEX22 (ENSMMNG00015015275)	MTA1 (ENSMMNG00015015323)	CRIP2 (ENSMMNG00015015373)	ENSMMNG00015015386	TEDC1 (ENSMMNG00015015599)	TMEM121 (ENSMMNG00015015668)	ENSMMNG00015015675	ENSMMNG00015015690
Beluga whale	MODERN SPECIES	24	ASPG (ENSDLEG00000000515)	KIF26A (ENSDLEG00000000396)	ENSDLEG00000000348	ENSDLEG00000000335	TMEM179 (ENSDLEG00000000320)	ENSDLEG00000000309	ENSDLEG00000000274	ADSSL1 (ENSDLEG00000000222)	SIVA1 (ENSDLEG00000000173)	AKT1 (ENSDLEG00000000134)	ZBTB42 (ENSDLEG00000000104)	CEP170B (ENSDLEG00000000076)	ENSDLEG00000015740	ENSDLEG00000015728	ENSDLEG00000015720	CLBA1 (ENSDLEG00000015703) ##22	CDCA4 (ENSDLEG00000015690) ##23	ENSDLEG00000015674	JAG2 (ENSDLEG00000015600)	NUDT14 (ENSDLEG00000015581)	BTBD6 (ENSDLEG00000015574)	BRF1 (ENSDLEG00000015471)	PACS2 (ENSDLEG00000015411)	TEX22 (ENSDLEG00000015393)	MTA1 (ENSDLEG00000015341)	CRIP2 (ENSDLEG00000015310)	CRIP1 (ENSDLEG00000015279)	TEDC1 (ENSDLEG00000015245)	TMEM121 (ENSDLEG00000015231)	ENSDLEG00000015226	ENSDLEG00000015217
Vaquita	MODERN SPECIES	11	TDRD9 (ENSPSNG00000013566)	RD3L (ENSPSNG00000014337)	ASPG (ENSPSNG00000014407)	KIF26A (ENSPSNG00000014965)	ENSPSNG00000015303	C14orf180 (ENSPSNG00000015364)	TMEM179 (ENSPSNG00000015440)	INF2 (ENSPSNG00000015600)	ADSS1 (ENSPSNG00000015758)	SIVA1 (ENSPSNG00000015824)	AKT1 (ENSPSNG00000015962)	ZBTB42 (ENSPSNG00000016026)	CEP170B (ENSPSNG00000016052)	ENSPSNG00000016128	ENSPSNG00000016163	CLBA1 (ENSPSNG00000016197) ##22	ENSPSNG00000016275 ##23	ENSPSNG00000016307	JAG2 (ENSPSNG00000016391)	NUDT14 (ENSPSNG00000016515)	BRF1 (ENSPSNG00000016633)	BTBD6 (ENSPSNG00000016925)	PACS2 (ENSPSNG00000017055)	TEX22 (ENSPSNG00000017197)	MTA1 (ENSPSNG00000017276)	CRIP2 (ENSPSNG00000017449)	ENSPSNG00000017504	TEDC1 (ENSPSNG00000017571)	TMEM121 (ENSPSNG00000017755)	ENSPSNG00000017811	ENSPSNG00000018243
Dolphin	MODERN SPECIES	657																ENSTTRG00000005726 ##22
Sperm whale	MODERN SPECIES	2	RD3L (ENSPCTG00005006295)	ASPG (ENSPCTG00005006345)	KIF26A (ENSPCTG00005006474)	C11H14orf180 (ENSPCTG00005006532)	TMEM179 (ENSPCTG00005006558)	ENSPCTG00005006624	ENSPCTG00005006636	ADSSL1 (ENSPCTG00005006663)	SIVA1 (ENSPCTG00005006719)	AKT1 (ENSPCTG00005006784)	ZBTB42 (ENSPCTG00005006892)	CEP170B (ENSPCTG00005006927)	ENSPCTG00005007196	ENSPCTG00005007237	ENSPCTG00005007253	CLBA1 (ENSPCTG00005007270) ##22	CDCA4 (ENSPCTG00005007301) ##23	ENSPCTG00005007315	JAG2 (ENSPCTG00005007376)	NUDT14 (ENSPCTG00005007575)	BRF1 (ENSPCTG00005007623)	BTBD6 (ENSPCTG00005007876)	PACS2 (ENSPCTG00005007912)	ENSPCTG00005008042	TEX22 (ENSPCTG00005008060)	MTA1 (ENSPCTG00005008100)	CRIP2 (ENSPCTG00005008205)	CRIP1 (ENSPCTG00005008246)	TEDC1 (ENSPCTG00005008301)	TMEM121 (ENSPCTG00005008686)	ENSPCTG00005008694
Blue whale	MODERN SPECIES	11	RD3L (ENSBMSG00010011364)	ENSBMSG00010011374	ASPG (ENSBMSG00010011404)	KIF26A (ENSBMSG00010011458)	ENSBMSG00010011486	ENSBMSG00010011497	TMEM179 (ENSBMSG00010011508)	INF2 (ENSBMSG00010011529)	ADSS1 (ENSBMSG00010011576)	SIVA1 (ENSBMSG00010011587)	AKT1 (ENSBMSG00010011602)	ZBTB42 (ENSBMSG00010011622)	CEP170B (ENSBMSG00010011638)	ENSBMSG00010011664	ENSBMSG00010011673	CLBA1 (ENSBMSG00010011691) ##22	ENSBMSG00010011708 ##23	ENSBMSG00010011714	JAG2 (ENSBMSG00010011735)	NUDT14 (ENSBMSG00010011769)	BRF1 (ENSBMSG00010011779)	BTBD6 (ENSBMSG00010011797)	PACS2 (ENSBMSG00010011843)	ENSBMSG00010011873	MTA1 (ENSBMSG00010011914)	CRIP2 (ENSBMSG00010012007)	CRIP1 (ENSBMSG00010012017)	TEDC1 (ENSBMSG00010012035)	TMEM121 (ENSBMSG00010012059)	ENSBMSG00010012089	ENSBMSG00010012147
Pecora	ANCESTRAL SPECIES	18	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Yarkand deer	MODERN SPECIES	4	RD3L (ENSCHYG00000005926)	TDRD9 (ENSCHYG00000005960)	ASPG (ENSCHYG00000006023)	KIF26A (ENSCHYG00000006246)	ENSCHYG00000006381	ENSCHYG00000006388	ENSCHYG00000006405	ENSCHYG00000006423	ADSS1 (ENSCHYG00000006452)	ENSCHYG00000006510	AKT1 (ENSCHYG00000006556)	ZBTB42 (ENSCHYG00000006701)	CEP170B (ENSCHYG00000006729)	PLD4 (ENSCHYG00000006800)	ENSCHYG00000006990	ENSCHYG00000007010 ##22	CDCA4 (ENSCHYG00000007064) ##23	ENSCHYG00000007080	JAG2 (ENSCHYG00000007139)	NUDT14 (ENSCHYG00000007340)	BRF1 (ENSCHYG00000007421)	BTBD6 (ENSCHYG00000007698)	PACS2 (ENSCHYG00000007765)	TEX22 (ENSCHYG00000008049)	MTA1 (ENSCHYG00000008098)	CRIP2 (ENSCHYG00000008414)	CRIP1 (ENSCHYG00000008460)	TEDC1 (ENSCHYG00000008488)	TMEM121 (ENSCHYG00000008586)	ENSCHYG00000008611	ENSCHYG00000008649
Percora_a	ANCESTRAL SPECIES	20	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Siberian musk deer	MODERN SPECIES	1238															ENSMMSG00000019932	CLBA1 (ENSMMSG00000019952) ##22	CDCA4 (ENSMMSG00000019997) ##23	ENSMMSG00000020012
Bovidae	ANCESTRAL SPECIES	20	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Caprinae	ANCESTRAL SPECIES	36	ENSGT00390000016760.c.b.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Rambouillet Sheep	MODERN SPECIES	9	PPP1R13B (ENSOARG00020017481)	ENSOARG00020017719	TDRD9 (ENSOARG00020017845)	RD3L (ENSOARG00020018479)	ASPG (ENSOARG00020018531)	KIF26A (ENSOARG00020018926)	TMEM179 (ENSOARG00020019369)	ENSOARG00020019411	ENSOARG00020019462	ADSS1 (ENSOARG00020019516)	SIVA1 (ENSOARG00020019622)	AKT1 (ENSOARG00020019748)	ZBTB42 (ENSOARG00020019830)	CEP170B (ENSOARG00020019866)	ENSOARG00020019970	CLBA1 (ENSOARG00020020019) ##22	CDCA4 (ENSOARG00020010088) ##23	ENSOARG00020010119	JAG2 (ENSOARG00020010210)	NUDT14 (ENSOARG00020011040)	ENSOARG00020011076	ENSOARG00020011162	BTBD6 (ENSOARG00020011262)	ENSOARG00020011353	PACS2 (ENSOARG00020011454)	TEX22 (ENSOARG00020012465)	MTA1 (ENSOARG00020012510)	ENSOARG00020012760	CRIP2 (ENSOARG00020012802)	CRIP1 (ENSOARG00020012857)	TEDC1 (ENSOARG00020012930)
Goat	MODERN SPECIES	13	ENSCHIG00000013979	BTBD6 (ENSCHIG00000012041)	ENSCHIG00000008318	ENSCHIG00000011145	NUDT14 (ENSCHIG00000011553)	PACS2 (ENSCHIG00000011419)	MTA1 (ENSCHIG00000024820)	ENSCHIG00000026753	ADSS1 (ENSCHIG00000018279)	SIVA1 (ENSCHIG00000021492)	AKT1 (ENSCHIG00000023255)	ZBTB42 (ENSCHIG00000007493)	CEP170B (ENSCHIG00000022357)	PLD4 (ENSCHIG00000011348)	ENSCHIG00000012025	CLBA1 (ENSCHIG00000001097) ##22	ENSCHIG00000025723	JAG2 (ENSCHIG00000015794)	ENSCHIG00000012445	ENSCHIG00000024628	ENSCHIG00000014983	ENSCHIG00000013577	ENSCHIG00000017462	ENSCHIG00000014225	ENSCHIG00000022824	ENSCHIG00000010165	ENSCHIG00000012975	ENSCHIG00000014345	ENSCHIG00000022354	ENSCHIG00000018729	ENSCHIG00000011662
Bovinae	ANCESTRAL SPECIES	19	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Bos	ANCESTRAL SPECIES	18	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Bos_b	ANCESTRAL SPECIES	18	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296	ENSGT00390000011474	ENSGT00390000003866.a.b
Hybrid Bos Indicus	MODERN SPECIES	13	ENSBIXG00005013147	TDRD9 (ENSBIXG00005013101)	RD3L (ENSBIXG00005013046)	ASPG (ENSBIXG00005013016)	KIF26A (ENSBIXG00005012948)	ENSBIXG00005012885	TMEM179 (ENSBIXG00005012856)	INF2 (ENSBIXG00005001421)	ADSS1 (ENSBIXG00005000295)	SIVA1 (ENSBIXG00005012675)	AKT1 (ENSBIXG00005012629)	ZBTB42 (ENSBIXG00005001375)	CEP170B (ENSBIXG00005001360)	PLD4 (ENSBIXG00005012482)	ENSBIXG00005006920	CLBA1 (ENSBIXG00005012448) ##22	CDCA4 (ENSBIXG00005012433) ##23	GPR132 (ENSBIXG00005012429)	JAG2 (ENSBIXG00005012390)	ENSBIXG00005012270	BRF1 (ENSBIXG00005005825)	BTBD6 (ENSBIXG00005012163)	PACS2 (ENSBIXG00005012087)	ENSBIXG00005006793	TEX22 (ENSBIXG00005012001)	MTA1 (ENSBIXG00005001217)	CRIP2 (ENSBIXG00005001188)	ENSBIXG00005011874	TEDC1 (ENSBIXG00005011821)	TMEM121 (ENSBIXG00005011652)	ENSBIXG00005001142
Cow	MODERN SPECIES	13	RD3L (ENSBTAG00000046401)	ASPG (ENSBTAG00000017194)	KIF26A (ENSBTAG00000021904)	C21H14orf180 (ENSBTAG00000022775)	TMEM179 (ENSBTAG00000006673)	ENSBTAG00000054250	ENSBTAG00000007187	ADSS1 (ENSBTAG00000017616)	SIVA1 (ENSBTAG00000017622)	AKT1 (ENSBTAG00000017636)	ZBTB42 (ENSBTAG00000005038)	CEP170B (ENSBTAG00000004802)	PLD4 (ENSBTAG00000015160)	AHNAK2 (ENSBTAG00000048906)	ENSBTAG00000053749	CLBA1 (ENSBTAG00000010370) ##22	CDCA4 (ENSBTAG00000031242) ##23	GPR132 (ENSBTAG00000005647)	JAG2 (ENSBTAG00000007319)	NUDT14 (ENSBTAG00000048010)	BRF1 (ENSBTAG00000012753)	BTBD6 (ENSBTAG00000012751)	PACS2 (ENSBTAG00000046346)	ENSBTAG00000051324	MTA1 (ENSBTAG00000047606)	CRIP1 (ENSBTAG00000047229)	ENSBTAG00000049082	TEDC1 (ENSBTAG00000046857)	ENSBTAG00000049275	TMEM121 (ENSBTAG00000045594)
Bos_a	ANCESTRAL SPECIES	10	ENSGT00940000155555	ENSGT00930000151053	ENSGT00940000159639	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Wild yak	MODERN SPECIES	2872													CEP170B (ENSBMUG00000003896)	PLD4 (ENSBMUG00000003759)	ENSBMUG00000003688	CLBA1 (ENSBMUG00000003656) ##22	CDCA4 (ENSBMUG00000003643) ##23	GPR132 (ENSBMUG00000003635)
Domestic yak	MODERN SPECIES	8	TDRD9 (ENSBGRG00000004595)	RD3L (ENSBGRG00000004882)	ASPG (ENSBGRG00000004910)	KIF26A (ENSBGRG00000004995)	ENSBGRG00000005062	ENSBGRG00000005088	ENSBGRG00000005143	ENSBGRG00000005153	ENSBGRG00000005179	ENSBGRG00000005221	ADSS1 (ENSBGRG00000005277)	SIVA1 (ENSBGRG00000005385)	ENSBGRG00000005467	ENSBGRG00000005500	PLD4 (ENSBGRG00000005552)	ENSBGRG00000005879 ##22	CDCA4 (ENSBGRG00000005931) ##23	GPR132 (ENSBGRG00000005941)	JAG2 (ENSBGRG00000006002)	NUDT14 (ENSBGRG00000006421)	BRF1 (ENSBGRG00000006476)	BTBD6 (ENSBGRG00000006797)	PACS2 (ENSBGRG00000006870)	TEX22 (ENSBGRG00000007377)	MTA1 (ENSBGRG00000007465)	ENSBGRG00000007640	TEDC1 (ENSBGRG00000007879)	TMEM121 (ENSBGRG00000008089)	ENSBGRG00000008126	ENSBGRG00000008181	ENSBGRG00000008247
Camelidae	ANCESTRAL SPECIES	8	ENSGT00390000016760.c.a.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.d	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000164671	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Arabian camel	MODERN SPECIES	32	TDRD9 (ENSCDRG00005007986)	RD3L (ENSCDRG00005008419)	ASPG (ENSCDRG00005008457)	KIF26A (ENSCDRG00005008650)	ENSCDRG00005000064	TMEM179 (ENSCDRG00005000074)	ENSCDRG00005000086	ENSCDRG00005000102	ADSS1 (ENSCDRG00005000148)	SIVA1 (ENSCDRG00005000351)	AKT1 (ENSCDRG00005000405)	ZBTB42 (ENSCDRG00005000448)	CEP170B (ENSCDRG00005000585)	ENSCDRG00005001583	ENSCDRG00005001606	CLBA1 (ENSCDRG00005001623) ##22	GPR132 (ENSCDRG00005001637)	JAG2 (ENSCDRG00005001676)	NUDT14 (ENSCDRG00005001885)	BRF1 (ENSCDRG00005001899)	BTBD6 (ENSCDRG00005001920)	PACS2 (ENSCDRG00005001942)	ENSCDRG00005002000	ENSCDRG00005002016	MTA1 (ENSCDRG00005002034)	CRIP2 (ENSCDRG00005002075)	ENSCDRG00005002095	TEDC1 (ENSCDRG00005002114)	TMEM121 (ENSCDRG00005002164)	ENSCDRG00005002174	ENSCDRG00005002185
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296
Carnivora	ANCESTRAL SPECIES		ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296	ENSGT00940000165752
Caniformia	ANCESTRAL SPECIES	15	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00940000171771	ENSGT00950000185296
Canidae	ANCESTRAL SPECIES	4	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000171771	ENSGT00950000185296	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516	ENSGT00940000163076
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000171771	ENSGT00950000185296	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516	ENSGT00940000163076
Dingo	MODERN SPECIES	161	ATP5MJ (ENSCAFG00020008682)	RD3L (ENSCAFG00020008680)	TDRD9 (ENSCAFG00020008631)	ASPG (ENSCAFG00020008565)	KIF26A (ENSCAFG00020008539)	ENSCAFG00020008518	TMEM179 (ENSCAFG00020008514)	ENSCAFG00020008299	ENSCAFG00020008266	SIVA1 (ENSCAFG00020008257)	AKT1 (ENSCAFG00020008240)	ENSCAFG00020008238	CEP170B (ENSCAFG00020008040)	ENSCAFG00020008014	ENSCAFG00020008013	ENSCAFG00020008003 ##22	CDCA4 (ENSCAFG00020007997) ##23	ENSCAFG00020007943	JAG2 (ENSCAFG00020007920)	NUDT14 (ENSCAFG00020007916)	BTBD6 (ENSCAFG00020007909)	BRF1 (ENSCAFG00020007648)	PACS2 (ENSCAFG00020007625)	MTA1 (ENSCAFG00020007555)	ENSCAFG00020007545	CRIP1 (ENSCAFG00020007525)	ENSCAFG00020007520	ENSCAFG00020007514	TMEM121 (ENSCAFG00020007511)	ENSCAFG00020007502	ENSCAFG00020007433
Dog	MODERN SPECIES	36	ATP5MJ (ENSCAFG00845020355)	TDRD9 (ENSCAFG00845020420)	RD3L (ENSCAFG00845020748)	ENSCAFG00845020802	KIF26A (ENSCAFG00845021077)	C8H14orf180 (ENSCAFG00845021444)	TMEM179 (ENSCAFG00845021480)	ADSSL1 (ENSCAFG00845021664)	SIVA1 (ENSCAFG00845021746)	AKT1 (ENSCAFG00845021825)	ENSCAFG00845021942	CEP170B (ENSCAFG00845021994)	ENSCAFG00845022238	ENSCAFG00845022334	ENSCAFG00845022389	ENSCAFG00845022426 ##22	CDCA4 (ENSCAFG00845022507) ##23	ENSCAFG00845022583	JAG2 (ENSCAFG00845022668)	BRF1 (ENSCAFG00845023117)	BTBD6 (ENSCAFG00845023437)	PACS2 (ENSCAFG00845023540)	TEX22 (ENSCAFG00845023873)	MTA1 (ENSCAFG00845024038)	ENSCAFG00845024778	CRIP1 (ENSCAFG00845024912)	ENSCAFG00845024966	ENSCAFG00845025010	ENSCAFG00845025041	ENSCAFG00845025067	ENSCAFG00845025124
Red fox	MODERN SPECIES	93	ZFYVE21 (ENSVVUG00000001046)	PPP1R13B (ENSVVUG00000001129)	RD3L (ENSVVUG00000002573)	TDRD9 (ENSVVUG00000002584)	ASPG (ENSVVUG00000002615)	KIF26A (ENSVVUG00000002653)	ENSVVUG00000002734	TMEM179 (ENSVVUG00000002741)	INF2 (ENSVVUG00000002759)	ADSS1 (ENSVVUG00000002814)	SIVA1 (ENSVVUG00000003195)	AKT1 (ENSVVUG00000003207)	CEP170B (ENSVVUG00000003257)	PLD4 (ENSVVUG00000003842)	ENSVVUG00000003856	ENSVVUG00000003866 ##22	CDCA4 (ENSVVUG00000003876) ##23	ENSVVUG00000003882	ENSVVUG00000003889	JAG2 (ENSVVUG00000004008)	NUDT14 (ENSVVUG00000005414)	BRF1 (ENSVVUG00000005457)	BTBD6 (ENSVVUG00000006187)	PACS2 (ENSVVUG00000006191)	TEX22 (ENSVVUG00000006219)	MTA1 (ENSVVUG00000006234)	CRIP2 (ENSVVUG00000006252)	CRIP1 (ENSVVUG00000006266)	ENSVVUG00000006290	TMEM121 (ENSVVUG00000006296)	ENSVVUG00000006297
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Mustelinae	ANCESTRAL SPECIES	37	ENSGT00390000016760.d	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
American mink	MODERN SPECIES	427						ENSNVIG00000007448	TMEM179 (ENSNVIG00000007437)	ENSNVIG00000007429	ENSNVIG00000007415	ADSS1 (ENSNVIG00000007383)	SIVA1 (ENSNVIG00000007371)	AKT1 (ENSNVIG00000007234)	ZBTB42 (ENSNVIG00000007216)	CEP170B (ENSNVIG00000007176)	ENSNVIG00000007164	ENSNVIG00000007108 ##22	CDCA4 (ENSNVIG00000007102) ##23	ENSNVIG00000007099	JAG2 (ENSNVIG00000007018)	NUDT14 (ENSNVIG00000006981)	BTBD6 (ENSNVIG00000006974)	BRF1 (ENSNVIG00000006897)	PACS2 (ENSNVIG00000006743)	MTA1 (ENSNVIG00000006532)	ENSNVIG00000006513	CRIP1 (ENSNVIG00000006499)	TEDC1 (ENSNVIG00000006414)	TMEM121 (ENSNVIG00000006400)
Ferret	MODERN SPECIES	208	ENSMPUG00000019159	ASPG (ENSMPUG00000002283)	KIF26A (ENSMPUG00000002257)	ENSMPUG00000002252	ENSMPUG00000002245	ENSMPUG00000019158	TMEM179 (ENSMPUG00000002239)	ENSMPUG00000019153	INF2 (ENSMPUG00000002197)	ADSS1 (ENSMPUG00000002167)	SIVA1 (ENSMPUG00000002160)	AKT1 (ENSMPUG00000002158)	CEP170B (ENSMPUG00000002152)	PLD4 (ENSMPUG00000002148)	ENSMPUG00000002142	ENSMPUG00000002136 ##22	CDCA4 (ENSMPUG00000002135) ##23	ENSMPUG00000019149
Ursidae	ANCESTRAL SPECIES	10	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780
Ursus	ANCESTRAL SPECIES	124	ENSGT00390000016760.c.b	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT01030000234573.A.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
American black bear	MODERN SPECIES	1139																CLBA1 (ENSUAMG00000011857) ##22	CDCA4 (ENSUAMG00000011854) ##23	ENSUAMG00000011852	JAG2 (ENSUAMG00000011755)	NUDT14 (ENSUAMG00000011732)	BTBD6 (ENSUAMG00000011728)	BRF1 (ENSUAMG00000011723)	PACS2 (ENSUAMG00000011718)
Polar bear	MODERN SPECIES	283	ENSUMAG00000024885	PPP1R13B (ENSUMAG00000024832)	ENSUMAG00000024831	RD3L (ENSUMAG00000024830)	TDRD9 (ENSUMAG00000024822)	ASPG (ENSUMAG00000024820)	ENSUMAG00000024817	ENSUMAG00000024816	INF2 (ENSUMAG00000024814)	ADSS1 (ENSUMAG00000024813)	ENSUMAG00000024812	AKT1 (ENSUMAG00000024713)	ENSUMAG00000024710	ENSUMAG00000024708	ENSUMAG00000024707	ENSUMAG00000024705 ##22	CDCA4 (ENSUMAG00000024704) ##23	ENSUMAG00000024703	ENSUMAG00000024700	BTBD6 (ENSUMAG00000024698)	BRF1 (ENSUMAG00000024695)	PACS2 (ENSUMAG00000024582)	ENSUMAG00000024567	ENSUMAG00000024563	CRIP2 (ENSUMAG00000024561)	CRIP1 (ENSUMAG00000024559)	ENSUMAG00000024557	ENSUMAG00000024555	ENSUMAG00000024554	ENSUMAG00000024553
Giant Panda	MODERN SPECIES	5	TDRD9 (ENSAMEG00000018095)	ASPG (ENSAMEG00000018086)	KIF26A (ENSAMEG00000030034)	ENSAMEG00000030789	ENSAMEG00000008005	ENSAMEG00000024465	ENSAMEG00000007980	ADSS1 (ENSAMEG00000007927)	ENSAMEG00000007907	AKT1 (ENSAMEG00000007766)	CEP170B (ENSAMEG00000007686)	PLD4 (ENSAMEG00000007639)	ENSAMEG00000024517	ENSAMEG00000028419	ENSAMEG00000027045	CLBA1 (ENSAMEG00000027851) ##22	CDCA4 (ENSAMEG00000029931) ##23	ENSAMEG00000030844	JAG2 (ENSAMEG00000000094)	NUDT14 (ENSAMEG00000000093)	BRF1 (ENSAMEG00000000085)	BTBD6 (ENSAMEG00000000091)	PACS2 (ENSAMEG00000000075)	TEX22 (ENSAMEG00000023829)	MTA1 (ENSAMEG00000000073)	CRIP2 (ENSAMEG00000000071)	ENSAMEG00000000070	TEDC1 (ENSAMEG00000000069)	ENSAMEG00000031173	ENSAMEG00000001079	ENSAMEG00000024170
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000016760.c.a.a.a	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000016760.c.a.a.a	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00390000016760.c.a.a.a	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
lion	MODERN SPECIES	83																ENSPLOG00000015458 ##22	CDCA4 (ENSPLOG00000015569) ##23	ENSPLOG00000015587	JAG2 (ENSPLOG00000015619)	NUDT14 (ENSPLOG00000015986)	BRF1 (ENSPLOG00000016030)	BTBD6 (ENSPLOG00000016331)	PACS2 (ENSPLOG00000016417)	TEX22 (ENSPLOG00000016624)	MTA1 (ENSPLOG00000016719)	CRIP2 (ENSPLOG00000017335)	CRIP1 (ENSPLOG00000017402)	TEDC1 (ENSPLOG00000017455)	TMEM121 (ENSPLOG00000017707)
Tiger	MODERN SPECIES	490	MARK3 (ENSPTIG00000013919)	CKB (ENSPTIG00000012834)	TRMT61A (ENSPTIG00000012664)	ENSPTIG00000012187	KLC1 (ENSPTIG00000021796)	XRCC3 (ENSPTIG00000021183)	ZFYVE21 (ENSPTIG00000020854)	PPP1R13B (ENSPTIG00000019969)	ATP5MJ (ENSPTIG00000019687)	RD3L (ENSPTIG00000019597)	TDRD9 (ENSPTIG00000017411)	ASPG (ENSPTIG00000016326)	ADSS1 (ENSPTIG00000015676)	SIVA1 (ENSPTIG00000015456)	ENSPTIG00000015395	ENSPTIG00000014779 ##22	ENSPTIG00000013911	ENSPTIG00000013253	ENSPTIG00000011461	BTBD6 (ENSPTIG00000010564)	ENSPTIG00000009902	ENSPTIG00000007641	ENSPTIG00000007209	ENSPTIG00000006540
Cat	MODERN SPECIES	237	ASPG (ENSFCAG00000024828)	KIF26A (ENSFCAG00000028169)	ENSFCAG00000051790	CB3H14orf180 (ENSFCAG00000028425)	ENSFCAG00000040445	ENSFCAG00000051804	ENSFCAG00000004939	ENSFCAG00000049445	ADSS1 (ENSFCAG00000042471)	SIVA1 (ENSFCAG00000004953)	AKT1 (ENSFCAG00000004957)	ENSFCAG00000046223	CEP170B (ENSFCAG00000046110)	PLD4 (ENSFCAG00000011100)	ENSFCAG00000049568	CLBA1 (ENSFCAG00000043181) ##22	CDCA4 (ENSFCAG00000032825) ##23	ENSFCAG00000040214	JAG2 (ENSFCAG00000031155)	NUDT14 (ENSFCAG00000032903)	BRF1 (ENSFCAG00000000686)	BTBD6 (ENSFCAG00000029656)	PACS2 (ENSFCAG00000030580)	TEX22 (ENSFCAG00000037189)	MTA1 (ENSFCAG00000000688)	CRIP2 (ENSFCAG00000000689)	CRIP1 (ENSFCAG00000016258)	TEDC1 (ENSFCAG00000028779)	TMEM121 (ENSFCAG00000041914)	ENSFCAG00000027020	ENSFCAG00000050655
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000018085.a.a.a.a	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Chiroptera	ANCESTRAL SPECIES	15	ENSGT00940000165819	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00940000161516	ENSGT00940000163076	ENSGT00940000162793
Microchiroptera	ANCESTRAL SPECIES	19	ENSGT00940000165819	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00940000161516	ENSGT00940000163076	ENSGT00940000162793	ENSGT00940000161491.d
Greater horseshoe bat	MODERN SPECIES	24	ENSRFEG00010002374	ENSRFEG00010002350	TDRD9 (ENSRFEG00010002295)	ASPG (ENSRFEG00010002245)	KIF26A (ENSRFEG00010002187)	ENSRFEG00010002091	TMEM179 (ENSRFEG00010002066)	INF2 (ENSRFEG00010001988)	ADSS1 (ENSRFEG00010001936)	ENSRFEG00010001890	AKT1 (ENSRFEG00010001809)	ZBTB42 (ENSRFEG00010001782)	CEP170B (ENSRFEG00010001756)	PLD4 (ENSRFEG00010001675)	ENSRFEG00010001635	CLBA1 (ENSRFEG00010001608) ##22	CDCA4 (ENSRFEG00010001598) ##23	GPR132 (ENSRFEG00010001584)	JAG2 (ENSRFEG00010001414)	NUDT14 (ENSRFEG00010001345)	BTBD6 (ENSRFEG00010001301)	BRF1 (ENSRFEG00010001247)	PACS2 (ENSRFEG00010001127)	TEX22 (ENSRFEG00010001075)	MTA1 (ENSRFEG00010000983)	CRIP2 (ENSRFEG00010000906)	ENSRFEG00010000892	TEDC1 (ENSRFEG00010000722)	ENSRFEG00010000626	ENSRFEG00010000617	ENSRFEG00010000599
Megabat	MODERN SPECIES	4824																ENSPVAG00000002605 ##22
Equus	ANCESTRAL SPECIES	17	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000018085.a.a.a.a	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT01030000234878
Horse	MODERN SPECIES	16	RD3L (ENSECAG00000036061)	ENSECAG00000050675 ##29	ASPG (ENSECAG00000013195)	KIF26A (ENSECAG00000018772)	C24H14orf180 (ENSECAG00000004388)	TMEM179 (ENSECAG00000052374)	ENSECAG00000038326	INF2 (ENSECAG00000007611)	ADSS1 (ENSECAG00000017366)	AKT1 (ENSECAG00000008264)	SIVA1 (ENSECAG00000007350)	ZBTB42 (ENSECAG00000031609)	CEP170B (ENSECAG00000019152)	PLD4 (ENSECAG00000022446)	ENSECAG00000042557	CLBA1 (ENSECAG00000000391) ##22	CDCA4 (ENSECAG00000006445) ##23	GPR132 (ENSECAG00000006513)	JAG2 (ENSECAG00000006609)	NUDT14 (ENSECAG00000016942)	BRF1 (ENSECAG00000018468)	BTBD6 (ENSECAG00000024116)	ENSECAG00000047963	PACS2 (ENSECAG00000005752)	MTA1 (ENSECAG00000009658)	CRIP2 (ENSECAG00000029783)	CRIP1 (ENSECAG00000031569)	TEDC1 (ENSECAG00000021909)	TMEM121 (ENSECAG00000041613)	ENSECAG00000009625	IGHE (ENSECAG00000009575)
Donkey	MODERN SPECIES	27	ENSEASG00005007833	ASPG (ENSEASG00005004249)	KIF26A (ENSEASG00005004267)	ENSEASG00005038486	TMEM179 (ENSEASG00005004296)	ENSEASG00005038139	ENSEASG00005004323	ADSS1 (ENSEASG00005004384)	ENSEASG00005004404	AKT1 (ENSEASG00005004424)	ZBTB42 (ENSEASG00005036474)	CEP170B (ENSEASG00005004442)	ENSEASG00005004459	ENSEASG00005030341	ENSEASG00005038187	CLBA1 (ENSEASG00005004481) ##22	CDCA4 (ENSEASG00005034124) ##23	ENSEASG00005024201	JAG2 (ENSEASG00005004497)	ENSEASG00005004512	BRF1 (ENSEASG00005004538)	BTBD6 (ENSEASG00005035163)	PACS2 (ENSEASG00005004608)	TEX22 (ENSEASG00005029031)	MTA1 (ENSEASG00005004635)	CRIP2 (ENSEASG00005004651)	ENSEASG00005029112	TEDC1 (ENSEASG00005004663)	TMEM121 (ENSEASG00005004670)	ENSEASG00005035502	ENSEASG00005004673
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Primates	ANCESTRAL SPECIES	2	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Simiiformes	ANCESTRAL SPECIES	2	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Hominoidea	ANCESTRAL SPECIES	12	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Hominidae	ANCESTRAL SPECIES	14	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT01050000244871.a.b.d.q.b.a.a.b
Pan	ANCESTRAL SPECIES	8	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Bonobo	MODERN SPECIES	5	ASPG (ENSPPAG00000000731)	KIF26A (ENSPPAG00000037737)	ENSPPAG00000032971	C14orf180 (ENSPPAG00000041150)	TMEM179 (ENSPPAG00000039000)	ENSPPAG00000029954	INF2 (ENSPPAG00000035161)	ENSPPAG00000011748	ADSS1 (ENSPPAG00000030656)	SIVA1 (ENSPPAG00000035159)	AKT1 (ENSPPAG00000040270)	ZBTB42 (ENSPPAG00000014266)	CEP170B (ENSPPAG00000028585)	PLD4 (ENSPPAG00000041861)	ENSPPAG00000017187	CLBA1 (ENSPPAG00000039688) ##22	CDCA4 (ENSPPAG00000024269) ##23	ENSPPAG00000040408	JAG2 (ENSPPAG00000030702)	NUDT14 (ENSPPAG00000016772)	BRF1 (ENSPPAG00000033076)	ENSPPAG00000043626	PACS2 (ENSPPAG00000033997)	ENSPPAG00000027701	TEX22 (ENSPPAG00000029911)	ENSPPAG00000040803	ENSPPAG00000027732	CRIP1 (ENSPPAG00000029039)	TEDC1 (ENSPPAG00000031172)	ENSPPAG00000032809	IGHV1-45 (ENSPPAG00000025317)
Chimpanzee	MODERN SPECIES	5	ASPG (ENSPTRG00000006766)	KIF26A (ENSPTRG00000033926)	ENSPTRG00000048997	C14H14orf180 (ENSPTRG00000006769)	ENSPTRG00000049533	TMEM179 (ENSPTRG00000006770)	INF2 (ENSPTRG00000006772)	ENSPTRG00000046678	ADSS1 (ENSPTRG00000006773)	SIVA1 (ENSPTRG00000006774)	AKT1 (ENSPTRG00000006775)	ZBTB42 (ENSPTRG00000040287)	CEP170B (ENSPTRG00000006778)	PLD4 (ENSPTRG00000051225)	AHNAK2 (ENSPTRG00000030658)	CLBA1 (ENSPTRG00000006781) ##22	CDCA4 (ENSPTRG00000047801) ##23	GPR132 (ENSPTRG00000048987)	JAG2 (ENSPTRG00000006784)	NUDT14 (ENSPTRG00000006785)	BRF1 (ENSPTRG00000006786)	BTBD6 (ENSPTRG00000052248)	PACS2 (ENSPTRG00000006789)	TEX22 (ENSPTRG00000049114)	MTA1 (ENSPTRG00000043446)	CRIP2 (ENSPTRG00000049215)	CRIP1 (ENSPTRG00000033768)	TEDC1 (ENSPTRG00000006795)	TMEM121 (ENSPTRG00000044299)	ENSPTRG00000046910	ENSPTRG00000045601
Human	MODERN SPECIES	5	ATP5MJ (ENSG00000156411)	TDRD9 (ENSG00000156414)	RD3L (ENSG00000227729)	ASPG (ENSG00000166183)	KIF26A (ENSG00000066735)	TMEM179 (ENSG00000258986)	C14orf180 (ENSG00000184601)	INF2 (ENSG00000203485)	ADSS1 (ENSG00000185100)	SIVA1 (ENSG00000184990)	AKT1 (ENSG00000142208)	ZBTB42 (ENSG00000179627)	CEP170B (ENSG00000099814)	PLD4 (ENSG00000166428)	AHNAK2 (ENSG00000185567)	CLBA1 (ENSG00000140104) ##22	CDCA4 (ENSG00000170779) ##23	GPR132 (ENSG00000183484)	JAG2 (ENSG00000184916)	NUDT14 (ENSG00000183828)	BRF1 (ENSG00000185024)	BTBD6 (ENSG00000184887)	PACS2 (ENSG00000179364)	TEX22 (ENSG00000226174)	MTA1 (ENSG00000182979)	CRIP2 (ENSG00000182809)	CRIP1 (ENSG00000213145)	TEDC1 (ENSG00000185347)	TMEM121 (ENSG00000184986)	IGHA2 (ENSG00000211890)	IGHE (ENSG00000211891)
Gorilla	MODERN SPECIES	5	RD3L (ENSGGOG00000038139)	ASPG (ENSGGOG00000003238)	KIF26A (ENSGGOG00000015026)	ENSGGOG00000010761	C14orf180 (ENSGGOG00000014934)	TMEM179 (ENSGGOG00000013426)	INF2 (ENSGGOG00000014158)	ENSGGOG00000040933	ADSSL1 (ENSGGOG00000012967)	SIVA1 (ENSGGOG00000012979)	AKT1 (ENSGGOG00000012984)	ZBTB42 (ENSGGOG00000024932)	CEP170B (ENSGGOG00000006499)	PLD4 (ENSGGOG00000009833)	ENSGGOG00000039798	CLBA1 (ENSGGOG00000002944) ##22	CDCA4 (ENSGGOG00000011424) ##23	GPR132 (ENSGGOG00000007056)	JAG2 (ENSGGOG00000007597)	NUDT14 (ENSGGOG00000007607)	BRF1 (ENSGGOG00000007611)	BTBD6 (ENSGGOG00000007627)	PACS2 (ENSGGOG00000007688)	TEX22 (ENSGGOG00000040770)	MTA1 (ENSGGOG00000002113)	ENSGGOG00000024135	CRIP1 (ENSGGOG00000027381)	TEDC1 (ENSGGOG00000001313)	TMEM121 (ENSGGOG00000001315)	ENSGGOG00000042986	ENSGGOG00000023644
Orangutan	MODERN SPECIES	5	KIF26A (ENSPPYG00000006182)	ENSPPYG00000039613	ENSPPYG00000006185	ENSPPYG00000006186	TMEM179 (ENSPPYG00000006187)	ENSPPYG00000006188	ENSPPYG00000006189	ADSS1 (ENSPPYG00000006190)	ENSPPYG00000006191	AKT1 (ENSPPYG00000006192)	ZBTB42 (ENSPPYG00000006193)	ENSPPYG00000006194	CEP170B (ENSPPYG00000006195)	PLD4 (ENSPPYG00000006196)	ENSPPYG00000006197	CLBA1 (ENSPPYG00000006200) ##22	CDCA4 (ENSPPYG00000006201) ##23	ENSPPYG00000034841	JAG2 (ENSPPYG00000006203)	NUDT14 (ENSPPYG00000006204)	BRF1 (ENSPPYG00000006205)	BTBD6 (ENSPPYG00000006206)	PACS2 (ENSPPYG00000006207)	TEX22 (ENSPPYG00000036286)	MTA1 (ENSPPYG00000006208)	CRIP2 (ENSPPYG00000034610)	ENSPPYG00000006209	TEDC1 (ENSPPYG00000006210)	TMEM121 (ENSPPYG00000006211)	ENSPPYG00000040335	ENSPPYG00000006228
Gibbon	MODERN SPECIES	14	PPP1R13B (ENSNLEG00000016238)	ENSNLEG00000016248	RD3L (ENSNLEG00000029602)	TDRD9 (ENSNLEG00000016251)	ASPG (ENSNLEG00000016278)	KIF26A (ENSNLEG00000016290)	ENSNLEG00000016298	ENSNLEG00000016306	TMEM179 (ENSNLEG00000016307)	INF2 (ENSNLEG00000016310)	ADSS1 (ENSNLEG00000016314)	SIVA1 (ENSNLEG00000016337)	AKT1 (ENSNLEG00000016343)	CEP170B (ENSNLEG00000016361)	ENSNLEG00000016390	ENSNLEG00000016393 ##22	ENSNLEG00000030806	ENSNLEG00000016395 ##23	ENSNLEG00000030249	JAG2 (ENSNLEG00000016400)	NUDT14 (ENSNLEG00000016418)	ENSNLEG00000027703	BRF1 (ENSNLEG00000016427)	PACS2 (ENSNLEG00000035430)	ENSNLEG00000028847	TEX22 (ENSNLEG00000030099)	MTA1 (ENSNLEG00000016496)	ENSNLEG00000035001	TEDC1 (ENSNLEG00000016503)	TMEM121 (ENSNLEG00000019087)	ENSNLEG00000036250
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000012831.b	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Macaca	ANCESTRAL SPECIES	1	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Pig-tailed macaque	MODERN SPECIES	160	TDRD9 (ENSMNEG00000044098)	RD3L (ENSMNEG00000037706)	ASPG (ENSMNEG00000043858)	KIF26A (ENSMNEG00000037576)	C14orf180 (ENSMNEG00000044931)	TMEM179 (ENSMNEG00000000690)	ENSMNEG00000044790	INF2 (ENSMNEG00000037123)	ENSMNEG00000036010	ADSS1 (ENSMNEG00000028814)	SIVA1 (ENSMNEG00000044089)	AKT1 (ENSMNEG00000036318)	ZBTB42 (ENSMNEG00000009274)	CEP170B (ENSMNEG00000036988)	PLD4 (ENSMNEG00000035633)	CLBA1 (ENSMNEG00000012891) ##22	ENSMNEG00000039948	ENSMNEG00000040694	GPR132 (ENSMNEG00000040051)	JAG2 (ENSMNEG00000044121)	ENSMNEG00000035924	BRF1 (ENSMNEG00000038206)	BTBD6 (ENSMNEG00000028873)	PACS2 (ENSMNEG00000039168)	ENSMNEG00000027688	TEX22 (ENSMNEG00000039388)	MTA1 (ENSMNEG00000044997)	CRIP2 (ENSMNEG00000045557)	CRIP1 (ENSMNEG00000041546)	TEDC1 (ENSMNEG00000044462)	TMEM121 (ENSMNEG00000024125)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00940000164709.a.b.b.a.a.b.b.b.a.b.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Rhesus	MODERN SPECIES	17	RD3L (ENSMMUG00000001698)	ENSMMUG00000055793	ASPG (ENSMMUG00000014295)	KIF26A (ENSMMUG00000009477)	ENSMMUG00000063241	C7H14orf180 (ENSMMUG00000050660)	TMEM179 (ENSMMUG00000029177)	INF2 (ENSMMUG00000016552)	ADSS1 (ENSMMUG00000016556)	SIVA1 (ENSMMUG00000052518)	AKT1 (ENSMMUG00000001044)	ZBTB42 (ENSMMUG00000001047)	CEP170B (ENSMMUG00000010576)	PLD4 (ENSMMUG00000010578)	AHNAK2 (ENSMMUG00000064694)	CLBA1 (ENSMMUG00000001273) ##22	CDCA4 (ENSMMUG00000007516) ##23	GPR132 (ENSMMUG00000007517)	JAG2 (ENSMMUG00000001276)	BRF1 (ENSMMUG00000029174)	BTBD6 (ENSMMUG00000013828)	PACS2 (ENSMMUG00000022939)	TEX22 (ENSMMUG00000060690)	MTA1 (ENSMMUG00000017313)	CRIP2 (ENSMMUG00000011475)	CRIP1 (ENSMMUG00000056589)	TEDC1 (ENSMMUG00000007159)	TMEM121 (ENSMMUG00000007163)	ENSMMUG00000002764	IGHE (ENSMMUG00000030305)	ENSMMUG00000015202
Crab-eating macaque	MODERN SPECIES	17	PPP1R13B (ENSMFAG00000000305)	ENSMFAG00000045832	TDRD9 (ENSMFAG00000001293)	RD3L (ENSMFAG00000035352)	ENSMFAG00000055064	ASPG (ENSMFAG00000032841)	ENSMFAG00000048273	ENSMFAG00000033912	TMEM179 (ENSMFAG00000039506)	ENSMFAG00000063944	ADSS1 (ENSMFAG00000039464)	SIVA1 (ENSMFAG00000036228)	AKT1 (ENSMFAG00000031655)	ZBTB42 (ENSMFAG00000029822)	PLD4 (ENSMFAG00000045718)	CLBA1 (ENSMFAG00000033689) ##22	ENSMFAG00000053259	CDCA4 (ENSMFAG00000051104) ##23	ENSMFAG00000035755	ENSMFAG00000034083	BRF1 (ENSMFAG00000001381)	BTBD6 (ENSMFAG00000031060)	PACS2 (ENSMFAG00000001091)	TEX22 (ENSMFAG00000059095)	MTA1 (ENSMFAG00000031186)	ENSMFAG00000035907	CRIP1 (ENSMFAG00000039395)	TEDC1 (ENSMFAG00000043836)	ENSMFAG00000060234	ENSMFAG00000063051	IGHE (ENSMFAG00000051850)
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000153463.a	ENSGT00940000165819	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Olive baboon	MODERN SPECIES	17	PPP1R13B (ENSPANG00000016275)	ENSPANG00000031228	RD3L (ENSPANG00000017601)	TDRD9 (ENSPANG00000004811)	ASPG (ENSPANG00000000882)	KIF26A (ENSPANG00000000883)	C14orf180 (ENSPANG00000037690)	TMEM179 (ENSPANG00000016733)	ENSPANG00000010776	ADSS1 (ENSPANG00000020415)	SIVA1 (ENSPANG00000023251)	AKT1 (ENSPANG00000017600)	ZBTB42 (ENSPANG00000024108)	CEP170B (ENSPANG00000004875)	PLD4 (ENSPANG00000012333)	CLBA1 (ENSPANG00000021762) ##22	CDCA4 (ENSPANG00000000090) ##23	ENSPANG00000011338	JAG2 (ENSPANG00000016732)	BTBD6 (ENSPANG00000021760)	ENSPANG00000021761	ENSPANG00000040373	PACS2 (ENSPANG00000025005)	TEX22 (ENSPANG00000025004)	MTA1 (ENSPANG00000013433)	CRIP2 (ENSPANG00000022246)	CRIP1 (ENSPANG00000020548)	TEDC1 (ENSPANG00000026051)	TMEM121 (ENSPANG00000014692)	IGHM (ENSPANG00000032125)	ENSPANG00000034836
Cercopithecinae_d	ANCESTRAL SPECIES	11	ENSGT00940000153463.a	ENSGT00940000165819	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00910000147497	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000166988	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00910000147468	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b
Sooty mangabey	MODERN SPECIES	249	TDRD9 (ENSCATG00000032905)	RD3L (ENSCATG00000030191)	ASPG (ENSCATG00000038024)	KIF26A (ENSCATG00000035120)	C14orf180 (ENSCATG00000027034)	ENSCATG00000020497	ENSCATG00000040734	TMEM179 (ENSCATG00000017806)	INF2 (ENSCATG00000043795)	ADSS1 (ENSCATG00000041846)	SIVA1 (ENSCATG00000033323)	AKT1 (ENSCATG00000019504)	ZBTB42 (ENSCATG00000020270)	CEP170B (ENSCATG00000013754)	PLD4 (ENSCATG00000036829)	CLBA1 (ENSCATG00000038997) ##22	ENSCATG00000018949	CDCA4 (ENSCATG00000020351) ##23	ENSCATG00000030167	JAG2 (ENSCATG00000018611)	ENSCATG00000030357	BRF1 (ENSCATG00000043565)	BTBD6 (ENSCATG00000032590)	PACS2 (ENSCATG00000000074)	MTA1 (ENSCATG00000036416)	CRIP2 (ENSCATG00000040077)	CRIP1 (ENSCATG00000035521)	TEDC1 (ENSCATG00000036061)	TMEM121 (ENSCATG00000020853)	ENSCATG00000032606	ENSCATG00000022274
Drill	MODERN SPECIES	862	ENSMLEG00000042511	RD3L (ENSMLEG00000036969)	TDRD9 (ENSMLEG00000032473)	ASPG (ENSMLEG00000035366)	KIF26A (ENSMLEG00000042165)	C14orf180 (ENSMLEG00000038106)	TMEM179 (ENSMLEG00000032654)	ENSMLEG00000033719	INF2 (ENSMLEG00000036125)	ADSS1 (ENSMLEG00000039349)	SIVA1 (ENSMLEG00000024810)	AKT1 (ENSMLEG00000038137)	ZBTB42 (ENSMLEG00000018617)	CEP170B (ENSMLEG00000028088)	PLD4 (ENSMLEG00000044336)	CLBA1 (ENSMLEG00000042807) ##22	ENSMLEG00000029218	CDCA4 (ENSMLEG00000027583) ##23	GPR132 (ENSMLEG00000043183)	JAG2 (ENSMLEG00000042898)	ENSMLEG00000034156	BRF1 (ENSMLEG00000027646)	BTBD6 (ENSMLEG00000027358)	PACS2 (ENSMLEG00000043108)	ENSMLEG00000000093	TEX22 (ENSMLEG00000040811)	MTA1 (ENSMLEG00000033919)	ENSMLEG00000032673	ENSMLEG00000040391	TEDC1 (ENSMLEG00000040448)	TMEM121 (ENSMLEG00000026200)
Vervet Monkey	MODERN SPECIES	16	TDRD9 (ENSCSAG00000009835)	RD3L (ENSCSAG00000009807)	ASPG (ENSCSAG00000009792)	KIF26A (ENSCSAG00000009760)	ENSCSAG00000019586	ENSCSAG00000019587	C14orf180 (ENSCSAG00000009732)	TMEM179 (ENSCSAG00000009730)	INF2 (ENSCSAG00000009722)	ADSS1 (ENSCSAG00000009714)	SIVA1 (ENSCSAG00000009707)	AKT1 (ENSCSAG00000009699)	ZBTB42 (ENSCSAG00000019588)	CEP170B (ENSCSAG00000009689)	PLD4 (ENSCSAG00000009675)	CLBA1 (ENSCSAG00000009640) ##22	CDCA4 (ENSCSAG00000019589) ##23	ENSCSAG00000009637	JAG2 (ENSCSAG00000009598)	NUDT14 (ENSCSAG00000009534)	BRF1 (ENSCSAG00000009526)	BTBD6 (ENSCSAG00000009515)	PACS2 (ENSCSAG00000009503)	TEX22 (ENSCSAG00000009492)	MTA1 (ENSCSAG00000009471)	CRIP2 (ENSCSAG00000009378)	CRIP1 (ENSCSAG00000009369)	TEDC1 (ENSCSAG00000009358)	TMEM121 (ENSCSAG00000019590)	ENSCSAG00000009341	ENSCSAG00000009319
Rhinopithecus	ANCESTRAL SPECIES	8	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00910000147394	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000148189	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720.i	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342.t	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Golden snub-nosed monkey	MODERN SPECIES	2004	ASPG (ENSRROG00000043061)	KIF26A (ENSRROG00000043380)	C14orf180 (ENSRROG00000000689)	ENSRROG00000042648	TMEM179 (ENSRROG00000038588)	INF2 (ENSRROG00000045582)	ENSRROG00000028121	ENSRROG00000004770	ADSS1 (ENSRROG00000033316)	SIVA1 (ENSRROG00000029716)	AKT1 (ENSRROG00000007711)	ZBTB42 (ENSRROG00000002265)	CEP170B (ENSRROG00000013222)	PLD4 (ENSRROG00000032791)	AHNAK2 (ENSRROG00000042226)	CLBA1 (ENSRROG00000036857) ##22	ENSRROG00000023122 ##23	GPR132 (ENSRROG00000035726)	JAG2 (ENSRROG00000039460)	NUDT14 (ENSRROG00000037648)	BTBD6 (ENSRROG00000035229)	BRF1 (ENSRROG00000005240)	PACS2 (ENSRROG00000028875)	TEX22 (ENSRROG00000042534)	MTA1 (ENSRROG00000016832)	CRIP2 (ENSRROG00000040113)	TEDC1 (ENSRROG00000040054)	TMEM121 (ENSRROG00000020084)	ENSRROG00000012963	ENSRROG00000026726	ENSRROG00000025140
Black snub-nosed monkey	MODERN SPECIES	1584														CEP170B (ENSRBIG00000013028)	PLD4 (ENSRBIG00000026635)	CLBA1 (ENSRBIG00000043848) ##22	CDCA4 (ENSRBIG00000029234) ##23	GPR132 (ENSRBIG00000039561)	JAG2 (ENSRBIG00000024310)	NUDT14 (ENSRBIG00000031191)	BRF1 (ENSRBIG00000032530)	PACS2 (ENSRBIG00000041969)	TEX22 (ENSRBIG00000022146)	MTA1 (ENSRBIG00000033104)	CRIP2 (ENSRBIG00000043729)	CRIP1 (ENSRBIG00000041997)	TEDC1 (ENSRBIG00000031936)	TMEM121 (ENSRBIG00000024740)
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Cebidae	ANCESTRAL SPECIES	3	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000165819	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00860000136327	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00910000147056	ENSGT00390000015553.a.b	ENSGT00390000004842.m	ENSGT00940000158752	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516	ENSGT00910000147322
Capuchin	MODERN SPECIES	338	ENSCCAG00000035325	ENSCCAG00000012217	TDRD9 (ENSCCAG00000022528)	RD3L (ENSCCAG00000034127)	ASPG (ENSCCAG00000014047)	KIF26A (ENSCCAG00000020022)	ENSCCAG00000031711	ENSCCAG00000025725	TMEM179 (ENSCCAG00000037124)	INF2 (ENSCCAG00000025214)	ADSSL1 (ENSCCAG00000022580)	SIVA1 (ENSCCAG00000032114)	AKT1 (ENSCCAG00000035086)	CEP170B (ENSCCAG00000035683)	PLD4 (ENSCCAG00000023538)	CLBA1 (ENSCCAG00000026964) ##22	GPR132 (ENSCCAG00000032947)	JAG2 (ENSCCAG00000020675)	NUDT14 (ENSCCAG00000035949)	BRF1 (ENSCCAG00000021388)	BTBD6 (ENSCCAG00000023022)	PACS2 (ENSCCAG00000037332)	TEX22 (ENSCCAG00000024991)	MTA1 (ENSCCAG00000037924)	EIF3C (ENSCCAG00000029099)	CRIP2 (ENSCCAG00000036293)	CRIP1 (ENSCCAG00000030536)	TEDC1 (ENSCCAG00000024169)	TMEM121 (ENSCCAG00000020723)	ENSCCAG00000019815	ENSCCAG00000008313
Bolivian squirrel monkey	MODERN SPECIES	98	ENSSBOG00000006745	RD3L (ENSSBOG00000035782)	TDRD9 (ENSSBOG00000027466)	ENSSBOG00000020362	ASPG (ENSSBOG00000032975)	KIF26A (ENSSBOG00000025778)	C14orf180 (ENSSBOG00000020567)	TMEM179 (ENSSBOG00000033653)	INF2 (ENSSBOG00000020658)	ENSSBOG00000031571	ADSS1 (ENSSBOG00000030331)	ENSSBOG00000017090	AKT1 (ENSSBOG00000020088)	CEP170B (ENSSBOG00000022866)	PLD4 (ENSSBOG00000022514)	CLBA1 (ENSSBOG00000031221) ##22	GPR132 (ENSSBOG00000022225)	JAG2 (ENSSBOG00000021616)	NUDT14 (ENSSBOG00000021318)	BTBD6 (ENSSBOG00000032514)	BRF1 (ENSSBOG00000024558)	PACS2 (ENSSBOG00000019138)	TEX22 (ENSSBOG00000021164)	MTA1 (ENSSBOG00000030247)	CRIP2 (ENSSBOG00000023215)	ENSSBOG00000020758	TEDC1 (ENSSBOG00000023616)	TMEM121 (ENSSBOG00000009564)	ENSSBOG00000014954	ENSSBOG00000014842	ENSSBOG00000008122
Marmoset	MODERN SPECIES	1	ATP5MJ (ENSCJAG00000044960)	TDRD9 (ENSCJAG00000017235)	RD3L (ENSCJAG00000082473)	KIF26A (ENSCJAG00000017272)	ENSCJAG00000007904	TMEM179 (ENSCJAG00000069879)	ENSCJAG00000057715	INF2 (ENSCJAG00000009247)	ADSS1 (ENSCJAG00000054537)	SIVA1 (ENSCJAG00000009290)	AKT1 (ENSCJAG00000009300)	ZBTB42 (ENSCJAG00000009308)	CEP170B (ENSCJAG00000002052)	PLD4 (ENSCJAG00000002039)	AHNAK2 (ENSCJAG00000072135)	CLBA1 (ENSCJAG00000081358) ##22	CDCA4 (ENSCJAG00000002020) ##23	GPR132 (ENSCJAG00000011755)	JAG2 (ENSCJAG00000011762)	BRF1 (ENSCJAG00000046093)	BTBD6 (ENSCJAG00000019754)	PACS2 (ENSCJAG00000019763)	MTA1 (ENSCJAG00000019780)	CRIP2 (ENSCJAG00000019783)	CRIP1 (ENSCJAG00000019788)	TEDC1 (ENSCJAG00000019791)	TMEM121 (ENSCJAG00000006338)	ENSCJAG00000076997	ENSCJAG00000071939	ENSCJAG00000075973	IGHM (ENSCJAG00000057231)
Mas night monkey	MODERN SPECIES	831	ENSANAG00000019756	RD3L (ENSANAG00000026776)	TDRD9 (ENSANAG00000020949)	ASPG (ENSANAG00000025896)	KIF26A (ENSANAG00000036661)	C14orf180 (ENSANAG00000027878)	ENSANAG00000031898	TMEM179 (ENSANAG00000033576)	INF2 (ENSANAG00000027924)	ENSANAG00000037653	ADSS1 (ENSANAG00000023043)	SIVA1 (ENSANAG00000034081)	AKT1 (ENSANAG00000027515)	CEP170B (ENSANAG00000038015)	PLD4 (ENSANAG00000032705)	CLBA1 (ENSANAG00000031506) ##22	GPR132 (ENSANAG00000022150)	JAG2 (ENSANAG00000033915)	NUDT14 (ENSANAG00000034770)	BRF1 (ENSANAG00000025319)	ENSANAG00000024643	BTBD6 (ENSANAG00000004230)	PACS2 (ENSANAG00000022931)	TEX22 (ENSANAG00000036433)	MTA1 (ENSANAG00000022882)	ENSANAG00000031896	CRIP1 (ENSANAG00000031961)	TEDC1 (ENSANAG00000032158)	TMEM121 (ENSANAG00000016678)	ENSANAG00000014076	ENSANAG00000013934
Tarsier	MODERN SPECIES	3840								INF2 (ENSTSYG00000033285)	ADSSL1 (ENSTSYG00000014528)	SIVA1 (ENSTSYG00000014530)	AKT1 (ENSTSYG00000034096)	ENSTSYG00000034326	CEP170B (ENSTSYG00000027709)	PLD4 (ENSTSYG00000033685)	AHNAK2 (ENSTSYG00000026700)	CLBA1 (ENSTSYG00000007352) ##22	GPR132 (ENSTSYG00000011865)	ENSTSYG00000002903	JAG2 (ENSTSYG00000028215)
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Lemuriformes	ANCESTRAL SPECIES	40	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780
Mouse lemur	MODERN SPECIES	22	PPP1R13B (ENSMICG00000014947)	ATP5MJ (ENSMICG00000047123)	TDRD9 (ENSMICG00000000428)	RD3L (ENSMICG00000043039)	ASPG (ENSMICG00000013859)	KIF26A (ENSMICG00000028277)	ENSMICG00000042488	TMEM179 (ENSMICG00000029522)	INF2 (ENSMICG00000034871)	ADSS1 (ENSMICG00000016511)	SIVA1 (ENSMICG00000016525)	AKT1 (ENSMICG00000013771)	CEP170B (ENSMICG00000035450)	PLD4 (ENSMICG00000005479)	ENSMICG00000031638	CLBA1 (ENSMICG00000034003) ##22	ENSMICG00000042147	JAG2 (ENSMICG00000033950)	NUDT14 (ENSMICG00000004115)	BRF1 (ENSMICG00000004119)	BTBD6 (ENSMICG00000004126)	PACS2 (ENSMICG00000001030)	TEX22 (ENSMICG00000034469)	MTA1 (ENSMICG00000004266)	CRIP2 (ENSMICG00000033237)	ENSMICG00000047747	TEDC1 (ENSMICG00000006490)	TMEM121 (ENSMICG00000032245)	ENSMICG00000044429	ENSMICG00000031235	ENSMICG00000030058
Lemuriformes_a	ANCESTRAL SPECIES	203																ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00900000143780	ENSGT00940000161516
Coquerels sifaka	MODERN SPECIES	1032																CLBA1 (ENSPCOG00000024526) ##22	GPR132 (ENSPCOG00000025014)	JAG2 (ENSPCOG00000012629)	NUDT14 (ENSPCOG00000009216)	BRF1 (ENSPCOG00000016488)	BTBD6 (ENSPCOG00000017854)	PACS2 (ENSPCOG00000013634)	TEX22 (ENSPCOG00000020677)	ENSPCOG00000013557
Greater bamboo lemur	MODERN SPECIES	311																CLBA1 (ENSPSMG00000000066) ##22	CDCA4 (ENSPSMG00000000055) ##23	GPR132 (ENSPSMG00000000043)	NUDT14 (ENSPSMG00000021353)	BTBD6 (ENSPSMG00000021349)	BRF1 (ENSPSMG00000021336)	PACS2 (ENSPSMG00000021269)	TEX22 (ENSPSMG00000021113)	MTA1 (ENSPSMG00000021010)	CRIP2 (ENSPSMG00000020769)	ENSPSMG00000020740	TEDC1 (ENSPSMG00000020732)	TMEM121 (ENSPSMG00000020695)	ENSPSMG00000020690
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Glires	ANCESTRAL SPECIES	12	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Muroidea	ANCESTRAL SPECIES	16	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00900000142981	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Cricetidae_B	ANCESTRAL SPECIES	18	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00900000142981	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000024643	Tdrd9 (ENSPEMG00000012496)	Rd3l (ENSPEMG00000017732)	Aspg (ENSPEMG00000009783)	Kif26a (ENSPEMG00000007760)	A530016L24Rik (ENSPEMG00000001566)	Tmem179 (ENSPEMG00000012685)	Inf2 (ENSPEMG00000000569)	Adssl1 (ENSPEMG00000000885)	Siva1 (ENSPEMG00000015079)	Akt1 (ENSPEMG00000013949)	ENSPEMG00000026105	Cep170b (ENSPEMG00000014648)	Pld4 (ENSPEMG00000007970)	ENSPEMG00000013784	Clba1 (ENSPEMG00000030978) ##22	Cdca4 (ENSPEMG00000026851) ##23	Gpr132 (ENSPEMG00000000863)	Jag2 (ENSPEMG00000012540)	Nudt14 (ENSPEMG00000013028)	Brf1 (ENSPEMG00000002810)	Btbd6 (ENSPEMG00000017258)	Pacs2 (ENSPEMG00000006112)	Tex22 (ENSPEMG00000009291)	Mta1 (ENSPEMG00000014497)	Crip2 (ENSPEMG00000016069)	Crip1 (ENSPEMG00000006620)	Tedc1 (ENSPEMG00000018246)	Tmem121 (ENSPEMG00000002237)	ENSPEMG00000028107	Ighe (ENSPEMG00000027488)
Prairie vole	MODERN SPECIES		Zfyve21 (ENSMOCG00000013746)	Ppp1r13b (ENSMOCG00000017048)	Atp5mpl (ENSMOCG00000018303)	Tdrd9 (ENSMOCG00000017012)	ENSMOCG00000006567	Aspg (ENSMOCG00000011052)	Kif26a (ENSMOCG00000001640)	A530016L24Rik (ENSMOCG00000005085)	Tmem179 (ENSMOCG00000019593)	Inf2 (ENSMOCG00000015901)	Adssl1 (ENSMOCG00000013298)	ENSMOCG00000002696	Akt1 (ENSMOCG00000015676)	Cep170b (ENSMOCG00000008247)	Pld4 (ENSMOCG00000018109)	Clba1 (ENSMOCG00000010028) ##22	Cdca4 (ENSMOCG00000011335) ##23	Gpr132 (ENSMOCG00000013396)	Jag2 (ENSMOCG00000022935)	Nudt14 (ENSMOCG00000005584)	Brf1 (ENSMOCG00000017813)	Btbd6 (ENSMOCG00000021298)	Pacs2 (ENSMOCG00000002425)	Tex22 (ENSMOCG00000003772)	Mta1 (ENSMOCG00000019316)	ENSMOCG00000006199	ENSMOCG00000009725	Tedc1 (ENSMOCG00000018454)	ENSMOCG00000009709	Tmem121 (ENSMOCG00000008761)	ENSMOCG00000020403
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00900000142981	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01030000234518.C.b	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000163307.e.a
Chinese hamster chok1gshd	MODERN SPECIES	266	Atp5mpl (ENSCGRG00001000674)	Rd3l (ENSCGRG00001000482)	Tdrd9 (ENSCGRG00001023336)	Aspg (ENSCGRG00001020993)	Kif26a (ENSCGRG00001017284)	A530016L24Rik (ENSCGRG00001020089)	Tmem179 (ENSCGRG00001018078)	Inf2 (ENSCGRG00001003961)	ADSSL1 (ENSCGRG00001019301)	Siva1 (ENSCGRG00001018931)	Akt1 (ENSCGRG00001016419)	ENSCGRG00001009300	Cep170b (ENSCGRG00001018499)	Pld4 (ENSCGRG00001015830)	ENSCGRG00001015333	Clba1 (ENSCGRG00001015070) ##22	Cdca4 (ENSCGRG00001015742) ##23	ENSCGRG00001014746	Jag2 (ENSCGRG00001000489)	Nudt14 (ENSCGRG00001011115)	Btbd6 (ENSCGRG00001009658)	Brf1 (ENSCGRG00001000222)	Pacs2 (ENSCGRG00001023001)	Tex22 (ENSCGRG00001020608)	ENSCGRG00001020502	Mta1 (ENSCGRG00001022230)	ENSCGRG00001000726	ENSCGRG00001013609	Tedc1 (ENSCGRG00001003215)	Tmem121 (ENSCGRG00001016221)	ENSCGRG00001017803
Golden Hamster	MODERN SPECIES	630	ENSMAUG00000012836	Rd3l (ENSMAUG00000013408)	Tdrd9 (ENSMAUG00000020617)	Aspg (ENSMAUG00000015535)	Kif26a (ENSMAUG00000020776)	A530016L24Rik (ENSMAUG00000009851)	Tmem179 (ENSMAUG00000001149)	Inf2 (ENSMAUG00000009995)	Adssl1 (ENSMAUG00000018516)	Siva1 (ENSMAUG00000020151)	Akt1 (ENSMAUG00000013021)	ENSMAUG00000009325	Cep170b (ENSMAUG00000016685)	Pld4 (ENSMAUG00000012543)	ENSMAUG00000019558	Clba1 (ENSMAUG00000004221) ##22	Gpr132 (ENSMAUG00000017659)	Jag2 (ENSMAUG00000002557)	Nudt14 (ENSMAUG00000011230)	Btbd6 (ENSMAUG00000007406)	Brf1 (ENSMAUG00000000770)	ENSMAUG00000021225	Pacs2 (ENSMAUG00000012528)	Tex22 (ENSMAUG00000014471)	Mta1 (ENSMAUG00000021432)	Crip2 (ENSMAUG00000017001)	Crip1 (ENSMAUG00000014051)	Tedc1 (ENSMAUG00000011838)	Tmem121 (ENSMAUG00000012378)	ENSMAUG00000016341	Ighm (ENSMAUG00000007816)
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b.d	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Mus	ANCESTRAL SPECIES	10	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00900000143306	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b.d	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00900000143306	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b.d	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00900000143306	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b.d	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Mouse	MODERN SPECIES	3	Atp5mpl (ENSMUSG00000021290)	Tdrd9 (ENSMUSG00000054003)	Rd3l (ENSMUSG00000091402)	Aspg (ENSMUSG00000037686)	Kif26a (ENSMUSG00000021294)	A530016L24Rik (ENSMUSG00000043122)	Tmem179 (ENSMUSG00000054013)	Inf2 (ENSMUSG00000037679)	Adssl1 (ENSMUSG00000011148)	Siva1 (ENSMUSG00000064326)	Akt1 (ENSMUSG00000001729)	Zbtb42 (ENSMUSG00000037638)	Cep170b (ENSMUSG00000072825)	Pld4 (ENSMUSG00000052160)	Ahnak2 (ENSMUSG00000118667)	Clba1 (ENSMUSG00000037594) ##22	Cdca4 (ENSMUSG00000047832) ##23	Gpr132 (ENSMUSG00000021298)	Jag2 (ENSMUSG00000002799)	Nudt14 (ENSMUSG00000002804)	Brf1 (ENSMUSG00000011158)	Btbd6 (ENSMUSG00000002803)	Pacs2 (ENSMUSG00000021143)	Tex22 (ENSMUSG00000012211)	Mta1 (ENSMUSG00000021144)	Crip2 (ENSMUSG00000006356)	Crip1 (ENSMUSG00000006360)	Tedc1 (ENSMUSG00000037466)	Tmem121 (ENSMUSG00000049036)	Igha (ENSMUSG00000095079)	Ighe (ENSMUSG00000087642)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00900000143791	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00900000143306	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b.d	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Steppe mouse	MODERN SPECIES	3394	Tdrd9 (ENSMSIG00000028705)	Rd3l (ENSMSIG00000028788)	Aspg (ENSMSIG00000028797)	Kif26a (ENSMSIG00000028809)	ENSMSIG00000028823	A530016L24Rik (ENSMSIG00000028824)	ENSMSIG00000028829	ENSMSIG00000028835	Adssl1 (ENSMSIG00000028896)	ENSMSIG00000028912	Akt1 (ENSMSIG00000028919)	ENSMSIG00000028948	Cep170b (ENSMSIG00000028952)	Pld4 (ENSMSIG00000029010)	ENSMSIG00000029023	Clba1 (ENSMSIG00000029030) ##22	Cdca4 (ENSMSIG00000029032) ##23	ENSMSIG00000029035	Jag2 (ENSMSIG00000029036)	Nudt14 (ENSMSIG00000029042)	Brf1 (ENSMSIG00000029057)	Btbd6 (ENSMSIG00000029080)	Pacs2 (ENSMSIG00000029089)	Tex22 (ENSMSIG00000029118)
spretus	MODERN SPECIES	3	Rd3l (MGP_SPRETEiJ_G0018995)	Aspg (MGP_SPRETEiJ_G0018996)	Kif26a (MGP_SPRETEiJ_G0018997)	MGP_SPRETEiJ_G0018998	A530016L24Rik (MGP_SPRETEiJ_G0018999)	Tmem179 (MGP_SPRETEiJ_G0019000)	Inf2 (MGP_SPRETEiJ_G0019001)	Adssl1 (MGP_SPRETEiJ_G0019002)	MGP_SPRETEiJ_G0019003	MGP_SPRETEiJ_G0019004	Akt1 (MGP_SPRETEiJ_G0019005)	Zbtb42 (MGP_SPRETEiJ_G0019006)	Cep170b (MGP_SPRETEiJ_G0019007)	Pld4 (MGP_SPRETEiJ_G0019008)	MGP_SPRETEiJ_G0019009	Clba1 (MGP_SPRETEiJ_G0019010) ##22	Cdca4 (MGP_SPRETEiJ_G0019011) ##23	Gpr132 (MGP_SPRETEiJ_G0019012)	Jag2 (MGP_SPRETEiJ_G0019013)	Nudt14 (MGP_SPRETEiJ_G0019014)	Brf1 (MGP_SPRETEiJ_G0019015)	Btbd6 (MGP_SPRETEiJ_G0019016)	MGP_SPRETEiJ_G0019017	Pacs2 (MGP_SPRETEiJ_G0019018)	Tex22 (MGP_SPRETEiJ_G0019019)	Mta1 (MGP_SPRETEiJ_G0019020)	Crip2 (MGP_SPRETEiJ_G0019021)	Crip1 (MGP_SPRETEiJ_G0019022)	Tedc1 (MGP_SPRETEiJ_G0019023)	Tmem121 (MGP_SPRETEiJ_G0019024)	MGP_SPRETEiJ_G0000003
Ryukyu mouse	MODERN SPECIES	3	Rd3l (MGP_CAROLIEiJ_G0018146)	Aspg (MGP_CAROLIEiJ_G0018147)	Kif26a (MGP_CAROLIEiJ_G0018148)	MGP_CAROLIEiJ_G0018149	A530016L24Rik (MGP_CAROLIEiJ_G0018150)	Tmem179 (MGP_CAROLIEiJ_G0018151)	Inf2 (MGP_CAROLIEiJ_G0018152)	Adssl1 (MGP_CAROLIEiJ_G0018153)	MGP_CAROLIEiJ_G0018154	MGP_CAROLIEiJ_G0018155	Akt1 (MGP_CAROLIEiJ_G0018156)	Zbtb42 (MGP_CAROLIEiJ_G0018157)	Cep170b (MGP_CAROLIEiJ_G0018158)	Pld4 (MGP_CAROLIEiJ_G0018159)	MGP_CAROLIEiJ_G0018160	Clba1 (MGP_CAROLIEiJ_G0018161) ##22	Cdca4 (MGP_CAROLIEiJ_G0018162) ##23	Gpr132 (MGP_CAROLIEiJ_G0018163)	Jag2 (MGP_CAROLIEiJ_G0018164)	Nudt14 (MGP_CAROLIEiJ_G0018165)	Brf1 (MGP_CAROLIEiJ_G0018166)	Btbd6 (MGP_CAROLIEiJ_G0018167)	MGP_CAROLIEiJ_G0018168	Pacs2 (MGP_CAROLIEiJ_G0018169)	Tex22 (MGP_CAROLIEiJ_G0018170)	Mta1 (MGP_CAROLIEiJ_G0018171)	Crip2 (MGP_CAROLIEiJ_G0018172)	Crip1 (MGP_CAROLIEiJ_G0018173)	Tedc1 (MGP_CAROLIEiJ_G0018174)	Tmem121 (MGP_CAROLIEiJ_G0018175)	Igha (MGP_CAROLIEiJ_G0000003)
Shrew mouse	MODERN SPECIES	20	Rd3l (MGP_PahariEiJ_G0029903)	Aspg (MGP_PahariEiJ_G0029904)	Kif26a (MGP_PahariEiJ_G0029905)	MGP_PahariEiJ_G0029906	A530016L24Rik (MGP_PahariEiJ_G0029907)	Tmem179 (MGP_PahariEiJ_G0029908)	MGP_PahariEiJ_G0029909	Adssl1 (MGP_PahariEiJ_G0029910)	MGP_PahariEiJ_G0029911	MGP_PahariEiJ_G0029912	Akt1 (MGP_PahariEiJ_G0029913)	Zbtb42 (MGP_PahariEiJ_G0029914)	Cep170b (MGP_PahariEiJ_G0029915)	Pld4 (MGP_PahariEiJ_G0029916)	MGP_PahariEiJ_G0029917	Clba1 (MGP_PahariEiJ_G0029918) ##22	Cdca4 (MGP_PahariEiJ_G0029919) ##23	Gpr132 (MGP_PahariEiJ_G0029920)	Jag2 (MGP_PahariEiJ_G0029921)	Nudt14 (MGP_PahariEiJ_G0029922)	Brf1 (MGP_PahariEiJ_G0029923)	Btbd6 (MGP_PahariEiJ_G0029924)	MGP_PahariEiJ_G0029925	Pacs2 (MGP_PahariEiJ_G0029926)	Tex22 (MGP_PahariEiJ_G0029927)	Mta1 (MGP_PahariEiJ_G0029928)	Crip2 (MGP_PahariEiJ_G0029929)	MGP_PahariEiJ_G0029930	Tedc1 (MGP_PahariEiJ_G0029931)	Tmem121 (MGP_PahariEiJ_G0029932)	Igha (MGP_PahariEiJ_G0000006)
Rat	MODERN SPECIES	16	ENSRNOG00000068254	Tdrd9 (ENSRNOG00000053631)	Rd3l (ENSRNOG00000043031)	Aspg (ENSRNOG00000012843)	Kif26a (ENSRNOG00000013661)	C6h14orf180 (ENSRNOG00000013097)	Tmem179 (ENSRNOG00000013128)	Inf2 (ENSRNOG00000028650)	Adss1 (ENSRNOG00000046763)	Siva1 (ENSRNOG00000028640)	Akt1 (ENSRNOG00000028629)	Zbtb42 (ENSRNOG00000037562)	Cep170b (ENSRNOG00000033688)	Pld4 (ENSRNOG00000028566)	ENSRNOG00000065195	Clba1 (ENSRNOG00000013690) ##22	Cdca4 (ENSRNOG00000013898) ##23	Gpr132 (ENSRNOG00000013914)	Jag2 (ENSRNOG00000013927)	Nudt14 (ENSRNOG00000014362)	Brf1 (ENSRNOG00000014595)	Btbd6 (ENSRNOG00000014693)	Pacs2 (ENSRNOG00000014744)	Tex22 (ENSRNOG00000028158)	Mta1 (ENSRNOG00000004711)	Crip2 (ENSRNOG00000005041)	Crip1 (ENSRNOG00000027990)	Tedc1 (ENSRNOG00000070355)	Tmem121 (ENSRNOG00000005174)	ENSRNOG00000063638	Ighm (ENSRNOG00000034190)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1766						A530016L24Rik (ENSNGAG00000014381)	Tmem179 (ENSNGAG00000017291)	Inf2 (ENSNGAG00000018366)	Adssl1 (ENSNGAG00000020226)	ENSNGAG00000017894	Akt1 (ENSNGAG00000018674)	ENSNGAG00000021557	Cep170b (ENSNGAG00000011929)	ENSNGAG00000017677	ENSNGAG00000019831	Clba1 (ENSNGAG00000010374) ##22	Cdca4 (ENSNGAG00000011717) ##23	Jag2 (ENSNGAG00000000769)	Nudt14 (ENSNGAG00000019625)	Brf1 (ENSNGAG00000000519)	Btbd6 (ENSNGAG00000011175)	Pacs2 (ENSNGAG00000012745)	Tex22 (ENSNGAG00000016084)	Mta1 (ENSNGAG00000018395)	Crip2 (ENSNGAG00000013098)	Crip1 (ENSNGAG00000000499)	Tedc1 (ENSNGAG00000002521)	Tmem121 (ENSNGAG00000010435)
Lesser Egyptian jerboa	MODERN SPECIES	122	Xrcc3 (ENSJJAG00000013625)	Zfyve21 (ENSJJAG00000016650)	ENSJJAG00000018703	ENSJJAG00000020211	Tdrd9 (ENSJJAG00000022462)	Aspg (ENSJJAG00000022213)	Kif26a (ENSJJAG00000000781)	A530016L24Rik (ENSJJAG00000020219)	Tmem179 (ENSJJAG00000021084)	Inf2 (ENSJJAG00000023781)	Adssl1 (ENSJJAG00000012984)	Siva1 (ENSJJAG00000020772)	Akt1 (ENSJJAG00000000878)	Cep170b (ENSJJAG00000016516)	ENSJJAG00000020123	Clba1 (ENSJJAG00000022030) ##22	ENSJJAG00000009518	ENSJJAG00000010705	Jag2 (ENSJJAG00000013134)	ENSJJAG00000021917	Brf1 (ENSJJAG00000010884)	Btbd6 (ENSJJAG00000020321)	Pacs2 (ENSJJAG00000009320)	ENSJJAG00000012615	Mta1 (ENSJJAG00000020994)	Crip1 (ENSJJAG00000021448)	Tedc1 (ENSJJAG00000007352)	Tmem121 (ENSJJAG00000014821)	ENSJJAG00000018043	ENSJJAG00000011673	ENSJJAG00000021648
Kangaroo rat	MODERN SPECIES	321	Xrcc3 (ENSDORG00000002650)	Zfyve21 (ENSDORG00000002651)	Ppp1r13b (ENSDORG00000002653)	ENSDORG00000023525	Tdrd9 (ENSDORG00000015167)	Aspg (ENSDORG00000023228)	Kif26a (ENSDORG00000029634)	ENSDORG00000029317	Inf2 (ENSDORG00000005106)	Adssl1 (ENSDORG00000009132)	ENSDORG00000027134	ENSDORG00000005935	ENSDORG00000026378	Cep170b (ENSDORG00000000834)	Pld4 (ENSDORG00000005219)	Clba1 (ENSDORG00000016646) ##22	Cdca4 (ENSDORG00000024944) ##23	Jag2 (ENSDORG00000014258)	ENSDORG00000010823	Btbd6 (ENSDORG00000010185)	Brf1 (ENSDORG00000003189)	Pacs2 (ENSDORG00000011546)	Mta1 (ENSDORG00000001352)	ENSDORG00000029238	Tedc1 (ENSDORG00000029524)	Tmem121 (ENSDORG00000029400)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161516	ENSGT00940000163076
Marmotini	ANCESTRAL SPECIES	27	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b	ENSGT00940000161491.d
Marmotini_b	ANCESTRAL SPECIES	99	ENSGT00390000016760	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000163959	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Arctic ground squirrel	MODERN SPECIES	320	TDRD9 (ENSUPAG00010018401)	RD3L (ENSUPAG00010018456)	ASPG (ENSUPAG00010018503)	KIF26A (ENSUPAG00010018523)	ENSUPAG00010018557	TMEM179 (ENSUPAG00010018572)	ENSUPAG00010018579	ENSUPAG00010018585	ADSS1 (ENSUPAG00010018597)	SIVA1 (ENSUPAG00010018682)	AKT1 (ENSUPAG00010018628)	ZBTB42 (ENSUPAG00010018703)	CEP170B (ENSUPAG00010018707)	PLD4 (ENSUPAG00010018801)	ENSUPAG00010018815	CLBA1 (ENSUPAG00010018822) ##22	CDCA4 (ENSUPAG00010018833) ##23	ENSUPAG00010018837	JAG2 (ENSUPAG00010018845)	NUDT14 (ENSUPAG00010018910)	BRF1 (ENSUPAG00010018960)	BTBD6 (ENSUPAG00010019005)	PACS2 (ENSUPAG00010019028)	TEX22 (ENSUPAG00010019836)	MTA1 (ENSUPAG00010019846)	CRIP2 (ENSUPAG00010019987)	ENSUPAG00010019995	TEDC1 (ENSUPAG00010020002)	TMEM121 (ENSUPAG00010020014)
Squirrel	MODERN SPECIES	221	PPP1R13B (ENSSTOG00000010345)	ATP5MJ (ENSSTOG00000007883)	RD3L (ENSSTOG00000026241)	ENSSTOG00000002831	TDRD9 (ENSSTOG00000007890)	ASPG (ENSSTOG00000023161)	KIF26A (ENSSTOG00000021225)	TMEM179 (ENSSTOG00000022354)	INF2 (ENSSTOG00000022460)	ADSS1 (ENSSTOG00000028911)	SIVA1 (ENSSTOG00000014621)	AKT1 (ENSSTOG00000013484)	ENSSTOG00000025960	CEP170B (ENSSTOG00000028623)	PLD4 (ENSSTOG00000020603)	CLBA1 (ENSSTOG00000013345) ##22	ENSSTOG00000006295	JAG2 (ENSSTOG00000027539)	NUDT14 (ENSSTOG00000005666)	BTBD6 (ENSSTOG00000024723)	BRF1 (ENSSTOG00000013651)	PACS2 (ENSSTOG00000027387)	MTA1 (ENSSTOG00000008095)	CRIP2 (ENSSTOG00000023992)	CRIP1 (ENSSTOG00000025103)	TEDC1 (ENSSTOG00000025493)	ENSSTOG00000016391	TMEM121 (ENSSTOG00000008122)
Alpin marmot	MODERN SPECIES	1	PPP1R13B (ENSMMMG00000004811)	ENSMMMG00000004833	RD3L (ENSMMMG00000004838)	TDRD9 (ENSMMMG00000004862)	ASPG (ENSMMMG00000004917)	KIF26A (ENSMMMG00000004945)	ENSMMMG00000004995	ENSMMMG00000005003	ADSS1 (ENSMMMG00000005086)	ENSMMMG00000005111	AKT1 (ENSMMMG00000005125)	ZBTB42 (ENSMMMG00000005169)	CEP170B (ENSMMMG00000005175)	PLD4 (ENSMMMG00000005275)	ENSMMMG00000005291	CLBA1 (ENSMMMG00000005300) ##22	CDCA4 (ENSMMMG00000005323) ##23	ENSMMMG00000005329	ENSMMMG00000005345	NUDT14 (ENSMMMG00000005352)	BRF1 (ENSMMMG00000005360)	BTBD6 (ENSMMMG00000005389)	PACS2 (ENSMMMG00000005410)	TEX22 (ENSMMMG00000005567)	MTA1 (ENSMMMG00000005587)	CRIP2 (ENSMMMG00000005887)	ENSMMMG00000005907	TMEM121 (ENSMMMG00000005920)	IGHM (ENSMMMG00000005950)
Eurasian red squirrel	MODERN SPECIES	11	TDRD9 (ENSSVLG00005011123)	ASPG (ENSSVLG00005010927)	KIF26A (ENSSVLG00005010683)	ENSSVLG00005010660	ENSSVLG00005010617	TMEM179 (ENSSVLG00005010567)	ENSSVLG00005010542	ENSSVLG00005010467	ADSS1 (ENSSVLG00005010440)	SIVA1 (ENSSVLG00005010361)	AKT1 (ENSSVLG00005010322)	ZBTB42 (ENSSVLG00005010306)	CEP170B (ENSSVLG00005010117)	PLD4 (ENSSVLG00005009941)	AHNAK2 (ENSSVLG00005009681)	CLBA1 (ENSSVLG00005009599) ##22	CDCA4 (ENSSVLG00005009582) ##23	ENSSVLG00005009552	NUDT14 (ENSSVLG00005009164)	BTBD6 (ENSSVLG00005009121)	BRF1 (ENSSVLG00005008953)	PACS2 (ENSSVLG00005008854)	TEX22 (ENSSVLG00005008795)	MTA1 (ENSSVLG00005008400)	CRIP2 (ENSSVLG00005008309)	CRIP1 (ENSSVLG00005008289)	ENSSVLG00005008276	ENSSVLG00005008256	TMEM121 (ENSSVLG00005008239)	ENSSVLG00005008144	ENSSVLG00005008000
Hystricomorpha	ANCESTRAL SPECIES	51	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Naked mole-rat female	MODERN SPECIES	18	PPP1R13B (ENSHGLG00000006763)	ENSHGLG00000036711	TDRD9 (ENSHGLG00000007727)	RD3L (ENSHGLG00000047639)	ASPG (ENSHGLG00000005952)	KIF26A (ENSHGLG00000005481)	TMEM179 (ENSHGLG00000047899)	ENSHGLG00000011755	ADSS1 (ENSHGLG00000010136)	SIVA1 (ENSHGLG00000009428)	AKT1 (ENSHGLG00000008399)	ENSHGLG00000040755	CEP170B (ENSHGLG00000006593)	PLD4 (ENSHGLG00000015672)	ENSHGLG00000039796	CLBA1 (ENSHGLG00000017277) ##22	CDCA4 (ENSHGLG00000017997) ##23	ENSHGLG00000015889	JAG2 (ENSHGLG00000015237)	ENSHGLG00000039460	BRF1 (ENSHGLG00000017851)	BTBD6 (ENSHGLG00000046326)	ENSHGLG00000015541	ENSHGLG00000044615	PACS2 (ENSHGLG00000017800)	ENSHGLG00000044463	ENSHGLG00000039006	ENSHGLG00000014674
Hystricomorpha_a	ANCESTRAL SPECIES	58	ENSGT00940000153463.a	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000164671	ENSGT00390000011474	ENSGT00390000003866.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	92	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000016760	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00900000142981	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000164671	ENSGT00390000011474	ENSGT00390000003866.a.b
Long-tailed chinchilla	MODERN SPECIES	245	ZFYVE21 (ENSCLAG00000010702)	PPP1R13B (ENSCLAG00000010854)	ENSCLAG00000006358	TDRD9 (ENSCLAG00000006616)	ASPG (ENSCLAG00000007283)	KIF26A (ENSCLAG00000007753)	ENSCLAG00000008417	TMEM179 (ENSCLAG00000008467)	INF2 (ENSCLAG00000011708)	ADSS1 (ENSCLAG00000004836)	ENSCLAG00000006003	AKT1 (ENSCLAG00000006147)	ENSCLAG00000006339	CEP170B (ENSCLAG00000006617)	PLD4 (ENSCLAG00000004150)	CLBA1 (ENSCLAG00000004906) ##22	CDCA4 (ENSCLAG00000005280) ##23	ENSCLAG00000005467	JAG2 (ENSCLAG00000006434)	NUDT14 (ENSCLAG00000006641)	BRF1 (ENSCLAG00000013343)	BTBD6 (ENSCLAG00000012630)	PACS2 (ENSCLAG00000012851)	MTA1 (ENSCLAG00000008352)	CRIP2 (ENSCLAG00000005876)	ENSCLAG00000006126	TEDC1 (ENSCLAG00000006165)	TMEM121 (ENSCLAG00000017732)
Degu	MODERN SPECIES	267	XRCC3 (ENSODEG00000002520)	ZFYVE21 (ENSODEG00000002496)	ENSODEG00000002481	ENSODEG00000002459	TDRD9 (ENSODEG00000002255)	ASPG (ENSODEG00000002164)	KIF26A (ENSODEG00000002137)	TMEM179 (ENSODEG00000002119)	INF2 (ENSODEG00000002088)	ADSS1 (ENSODEG00000002065)	ENSODEG00000002046	AKT1 (ENSODEG00000002014)	ENSODEG00000001993	CEP170B (ENSODEG00000001823)	PLD4 (ENSODEG00000001760)	CLBA1 (ENSODEG00000001743) ##22	JAG2 (ENSODEG00000003270)	NUDT14 (ENSODEG00000003206)	BTBD6 (ENSODEG00000003194)	BRF1 (ENSODEG00000003136)	ENSODEG00000003078	PACS2 (ENSODEG00000002989)	MTA1 (ENSODEG00000002593)	ENSODEG00000002414	ENSODEG00000002387	TEDC1 (ENSODEG00000002363)	TMEM121 (ENSODEG00000018948)
Guinea pig	MODERN SPECIES	111	ZFYVE21 (ENSCPOG00000024426)	PPP1R13B (ENSCPOG00000021000)	ENSCPOG00000033733	TDRD9 (ENSCPOG00000002760)	RD3L (ENSCPOG00000036429)	ASPG (ENSCPOG00000026114)	KIF26A (ENSCPOG00000019833)	ENSCPOG00000039530	INF2 (ENSCPOG00000015219)	ADSS1 (ENSCPOG00000009566)	SIVA1 (ENSCPOG00000040620)	AKT1 (ENSCPOG00000004489)	ENSCPOG00000021122	CEP170B (ENSCPOG00000011480)	PLD4 (ENSCPOG00000002049)	ENSCPOG00000008116 ##22	CDCA4 (ENSCPOG00000001734) ##23	GPR132 (ENSCPOG00000038100)	JAG2 (ENSCPOG00000008419)	NUDT14 (ENSCPOG00000020487)	BRF1 (ENSCPOG00000000067)	BTBD6 (ENSCPOG00000021021)	PACS2 (ENSCPOG00000005656)	MTA1 (ENSCPOG00000020163)	CRIP2 (ENSCPOG00000033280)	ENSCPOG00000040343	TEDC1 (ENSCPOG00000011010)	TMEM121 (ENSCPOG00000021532)
Atlantogenata	ANCESTRAL SPECIES	102	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT00520000061791	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Afrotheria	ANCESTRAL SPECIES	129	ENSGT00930000151053	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Afrotheria_a	ANCESTRAL SPECIES	132	ENSGT00930000151053	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00390000001214	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00950000183209.b.b	ENSGT01030000234573.B.c.a	ENSGT00940000158683.b	ENSGT00940000162342	ENSGT00390000011474	ENSGT00390000003866.a.b
Elephant	MODERN SPECIES	602	XRCC3 (ENSLAFG00000010642)	ZFYVE21 (ENSLAFG00000012540)	PPP1R13B (ENSLAFG00000012542)	TDRD9 (ENSLAFG00000007580)	ASPG (ENSLAFG00000031455)	KIF26A (ENSLAFG00000022951)	ENSLAFG00000026667	TMEM179 (ENSLAFG00000006445)	ENSLAFG00000027091	ADSS1 (ENSLAFG00000013331)	SIVA1 (ENSLAFG00000014514)	AKT1 (ENSLAFG00000027344)	CEP170B (ENSLAFG00000014298)	PLD4 (ENSLAFG00000010724)	ENSLAFG00000026357	CLBA1 (ENSLAFG00000007919) ##22	ENSLAFG00000012979	ENSLAFG00000029424	NUDT14 (ENSLAFG00000027587)	BRF1 (ENSLAFG00000002155)	BTBD6 (ENSLAFG00000002157)	PACS2 (ENSLAFG00000030594)	MTA1 (ENSLAFG00000016298)	ENSLAFG00000029242	CRIP2 (ENSLAFG00000025571)	CRIP1 (ENSLAFG00000030344)	TMEM121 (ENSLAFG00000023144)	ENSLAFG00000015425
Platypus	MODERN SPECIES		BAG5 (ENSOANG00000000627)	XRCC3 (ENSOANG00000000792)	ENSOANG00000049279	PPP1R13B (ENSOANG00000000793)	ATP5MPL (ENSOANG00000043647)	TDRD9 (ENSOANG00000000797)	RD3L (ENSOANG00000000795)	KIF26A (ENSOANG00000042686)	ENSOANG00000011958	INF2 (ENSOANG00000001085)	ADSS1 (ENSOANG00000005973)	AKT1 (ENSOANG00000031179)	ENSOANG00000038038	CEP170B (ENSOANG00000005494)	PLD4 (ENSOANG00000008687)	ENSOANG00000029951 ##22	CDCA4 (ENSOANG00000039971) ##23	ENSOANG00000038069	ENSOANG00000043846	FBLN7 (ENSOANG00000038995)	ZC3H6 (ENSOANG00000012054)	ENSOANG00000012053	MRPS5 (ENSOANG00000020547)	ENSOANG00000031935	ENSOANG00000006702	THUMPD2 (ENSOANG00000004028)	TMEM178A (ENSOANG00000014971)	MAP4K3 (ENSOANG00000014972)	CDKL4 (ENSOANG00000014973)	RDH13 (ENSOANG00000014974)	SOS1 (ENSOANG00000014976)
Sauria	ANCESTRAL SPECIES	3	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Archelosauria	ANCESTRAL SPECIES	2	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Archosauria	ANCESTRAL SPECIES	5	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C
Aves	ANCESTRAL SPECIES	2	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Neognathae	ANCESTRAL SPECIES	4	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.g.a	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Neognathae_b	ANCESTRAL SPECIES	6	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.g.a	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT01050000244827.D.b.a.h	ENSGT01030000235253	ENSGT00960000187998	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746
Passeriformes	ANCESTRAL SPECIES	5	ENSGT00940000153463.a	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT01050000244827.D.b.a.h	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Passeriformes_d	ANCESTRAL SPECIES	5	ENSGT00940000153463.a	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a.r	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT01050000244827.D.b.a.h	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Passeriformes_g	ANCESTRAL SPECIES		ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a.r	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT01050000244827.D.b.a.h	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Passeroidea	ANCESTRAL SPECIES	1	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a.r	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT01050000244827.D.b.a.h	ENSGT00960000187998	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C
Common canary	MODERN SPECIES	3	ZFYVE21 (ENSSCAG00000006542)	PPP1R13B (ENSSCAG00000006505)	ENSSCAG00000006497	RD3L (ENSSCAG00000006493)	ASPG (ENSSCAG00000006462)	KIF26A (ENSSCAG00000006458)	TMEM179 (ENSSCAG00000006441)	INF2 (ENSSCAG00000006426)	ADSS1 (ENSSCAG00000006419)	SIVA1 (ENSSCAG00000006412)	AKT1 (ENSSCAG00000006407)	ENSSCAG00000006397	CEP170B (ENSSCAG00000006374)	PLD4 (ENSSCAG00000006365)	ENSSCAG00000006362	CLBA1 (ENSSCAG00000006351) ##22	ENSSCAG00000006349 ##23	CDCA4 (ENSSCAG00000006348) ##23	ENSSCAG00000006345	ENSSCAG00000006342	JAG2 (ENSSCAG00000006224)	NUDT14 (ENSSCAG00000006200)	ENSSCAG00000006191	ENSSCAG00000006184	ENSSCAG00000006178	BTBD6 (ENSSCAG00000006173)	ENSSCAG00000006168	HSPA2 (ENSSCAG00000006153)	ZBTB1 (ENSSCAG00000006148)	ZBTB25 (ENSSCAG00000006142)	AKAP5 (ENSSCAG00000006138)
Zebra finch	MODERN SPECIES	27	XRCC3 (ENSTGUG00000012872)	ZFYVE21 (ENSTGUG00000012879)	PPP1R13B (ENSTGUG00000012883)	TDRD9 (ENSTGUG00000012887)	RD3L (ENSTGUG00000012886)	ASPG (ENSTGUG00000012891)	KIF26A (ENSTGUG00000012894)	TMEM179 (ENSTGUG00000029779)	INF2 (ENSTGUG00000012898)	ADSS1 (ENSTGUG00000012901)	ENSTGUG00000012902	AKT1 (ENSTGUG00000012904)	ENSTGUG00000023786	CEP170B (ENSTGUG00000012907)	PLD4 (ENSTGUG00000012908)	CLBA1 (ENSTGUG00000012915) ##22	ENSTGUG00000027350 ##23	CDCA4 (ENSTGUG00000024772) ##23	ENSTGUG00000012919	JAG2 (ENSTGUG00000012921)	NUDT14 (ENSTGUG00000012924)	ENSTGUG00000012925	BRF1 (ENSTGUG00000012926)	BTBD6 (ENSTGUG00000012927)	HSPA2 (ENSTGUG00000012929)	ZBTB1 (ENSTGUG00000012931)	MTHFD1 (ENSTGUG00000012936)	ZBTB25 (ENSTGUG00000020182)	ESR2 (ENSTGUG00000012942)	SYNE2 (ENSTGUG00000012947)	SGPP1 (ENSTGUG00000021316)
Flycatcher	MODERN SPECIES	24	ZFYVE21 (ENSFALG00000025223)	PPP1R13B (ENSFALG00000002885)	ENSFALG00000002903	RD3L (ENSFALG00000002905)	TDRD9 (ENSFALG00000002911)	ASPG (ENSFALG00000002919)	KIF26A (ENSFALG00000027781)	TMEM179 (ENSFALG00000002938)	INF2 (ENSFALG00000002942)	ADSS1 (ENSFALG00000002967)	AKT1 (ENSFALG00000002974)	ENSFALG00000014898	CEP170B (ENSFALG00000002978)	PLD4 (ENSFALG00000002991)	ENSFALG00000026963	CLBA1 (ENSFALG00000027749) ##22	ENSFALG00000014915 ##23	CDCA4 (ENSFALG00000027613) ##23	ENSFALG00000014925	JAG2 (ENSFALG00000003041)	NUDT14 (ENSFALG00000003099)	ENSFALG00000014946	BRF1 (ENSFALG00000003108)	BTBD6 (ENSFALG00000003115)	ENSFALG00000003127	ZBTB25 (ENSFALG00000025936)	ENSFALG00000022949	MTHFD1 (ENSFALG00000003203)	ESR2 (ENSFALG00000003252)	ENSFALG00000003274	ENSFALG00000003315
Great tit	MODERN SPECIES	25	PPP1R13B (ENSPMJG00000000511)	ENSPMJG00000000602	TDRD9 (ENSPMJG00000000607)	RD3L (ENSPMJG00000000680)	ASPG (ENSPMJG00000000689)	KIF26A (ENSPMJG00000000742)	TMEM179 (ENSPMJG00000000866)	INF2 (ENSPMJG00000000946)	ADSS1 (ENSPMJG00000000977)	SIVA1 (ENSPMJG00000000984)	AKT1 (ENSPMJG00000000990)	ENSPMJG00000000996	CEP170B (ENSPMJG00000001031)	PLD4 (ENSPMJG00000001081)	ENSPMJG00000001093	CLBA1 (ENSPMJG00000001103) ##22	ENSPMJG00000001110 ##23	CDCA4 (ENSPMJG00000001114) ##23	ENSPMJG00000001119	JAG2 (ENSPMJG00000001182)	NUDT14 (ENSPMJG00000001235)	ENSPMJG00000001250	BRF1 (ENSPMJG00000001283)	BTBD6 (ENSPMJG00000001366)	HSPA2 (ENSPMJG00000001378)	ZBTB25 (ENSPMJG00000001385)	ZBTB1 (ENSPMJG00000001496)	AKAP5 (ENSPMJG00000001500)	MTHFD1 (ENSPMJG00000001516)	ESR2 (ENSPMJG00000001555)	SYNE2 (ENSPMJG00000001609)
Neognathae_c	ANCESTRAL SPECIES	6	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.g.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656	ENSGT00940000158836
Kakapo	MODERN SPECIES	21	ZFYVE21 (ENSSHBG00005011794)	PPP1R13B (ENSSHBG00005011748)	ENSSHBG00005011720	RD3L (ENSSHBG00005011705)	TDRD9 (ENSSHBG00005011669)	ASPG (ENSSHBG00005011634)	KIF26A (ENSSHBG00005011575)	TMEM179 (ENSSHBG00005011522)	INF2 (ENSSHBG00005011499)	ADSS1 (ENSSHBG00005011467)	SIVA1 (ENSSHBG00005011449)	AKT1 (ENSSHBG00005011420)	ENSSHBG00005011409	CEP170B (ENSSHBG00005011383)	PLD4 (ENSSHBG00005011360)	CLBA1 (ENSSHBG00005011320) ##22	ENSSHBG00005011301 ##23	CDCA4 (ENSSHBG00005011188) ##23	ENSSHBG00005011152	JAG2 (ENSSHBG00005011115)	ENSSHBG00005011074	NUDT14 (ENSSHBG00005011040)	ENSSHBG00005011014	BTBD6 (ENSSHBG00005010989)	BRF1 (ENSSHBG00005010950)	HSPA2 (ENSSHBG00005010911)	ZBTB1 (ENSSHBG00005010854)	ZBTB25 (ENSSHBG00005010830)	AKAP5 (ENSSHBG00005010820)	MTHFD1 (ENSSHBG00005010791)	ESR2 (ENSSHBG00005010702)
Golden eagle	MODERN SPECIES	11	ENSACCG00020014880	RD3L (ENSACCG00020014869)	TDRD9 (ENSACCG00020014851)	ASPG (ENSACCG00020014821)	KIF26A (ENSACCG00020014793)	TMEM179 (ENSACCG00020014775)	INF2 (ENSACCG00020014757)	ADSS1 (ENSACCG00020014725)	SIVA1 (ENSACCG00020014708)	AKT1 (ENSACCG00020014694)	ENSACCG00020014680	CEP170B (ENSACCG00020014626)	PLD4 (ENSACCG00020014585)	ENSACCG00020014566	ENSACCG00020014496	CLBA1 (ENSACCG00020014433) ##22	ENSACCG00020014419 ##23	CDCA4 (ENSACCG00020014398) ##23	ENSACCG00020014374	ENSACCG00020014361	JAG2 (ENSACCG00020014329)	NUDT14 (ENSACCG00020014310)	BTBD6 (ENSACCG00020014294)	ENSACCG00020014273	BRF1 (ENSACCG00020014250)	HSPA2 (ENSACCG00020014228)	ZBTB1 (ENSACCG00020014205)	ZBTB25 (ENSACCG00020014194)	AKAP5 (ENSACCG00020014122)	MTHFD1 (ENSACCG00020014089)	ESR2 (ENSACCG00020014061)
Galloanserae	ANCESTRAL SPECIES	4	ENSGT01030000235387	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336.g.a	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Anatidae	ANCESTRAL SPECIES	9	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00940000171479	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.h	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656	ENSGT00900000143157
Pink-footed goose	MODERN SPECIES	159																CLBA1 (ENSABRG00000009485) ##22	ENSABRG00000009457 ##23	CDCA4 (ENSABRG00000009449) ##23	ENSABRG00000009442	JAG2 (ENSABRG00000009408)	NUDT14 (ENSABRG00000009400)	BTBD6 (ENSABRG00000009361)	BRF1 (ENSABRG00000009340)	HSPA2 (ENSABRG00000009298)	ZBTB1 (ENSABRG00000009294)	ZBTB25 (ENSABRG00000009283)	ENSABRG00000009248	MTHFD1 (ENSABRG00000009207)	ESR2 (ENSABRG00000009109)	SYNE2 (ENSABRG00000006476)	SGPP1 (ENSABRG00000006254)
Duck	MODERN SPECIES	23	ENSAPLG00000029834	TDRD9 (ENSAPLG00000007429)	RD3L (ENSAPLG00000007355)	ASPG (ENSAPLG00000008103)	ENSAPLG00000029098	ENSAPLG00000029958	TMEM179 (ENSAPLG00000007213)	INF2 (ENSAPLG00000015886)	ADSS1 (ENSAPLG00000027680)	SIVA1 (ENSAPLG00000016312)	AKT1 (ENSAPLG00000016314)	ENSAPLG00000016394	CEP170B (ENSAPLG00000016395)	PLD4 (ENSAPLG00000016446)	ENSAPLG00000000580	CLBA1 (ENSAPLG00000005947) ##22	ENSAPLG00000022415 ##23	CDCA4 (ENSAPLG00000002218) ##23	ENSAPLG00000002216	JAG2 (ENSAPLG00000004118)	NUDT14 (ENSAPLG00000003998)	ENSAPLG00000010609	ENSAPLG00000025913	BTBD6 (ENSAPLG00000010734)	ENSAPLG00000016761	ENSAPLG00000010843	ZBTB1 (ENSAPLG00000001073)	ZBTB25 (ENSAPLG00000016857)	ENSAPLG00000017943	MTHFD1 (ENSAPLG00000010974)	ESR2 (ENSAPLG00000011895)
Phasianidae	ANCESTRAL SPECIES	4	ENSGT00940000153463.a	ENSGT01030000235387	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336.g.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Japanese quail	MODERN SPECIES	23	TDRD9 (ENSCJPG00005002971)	ENSCJPG00005002980	RD3L (ENSCJPG00005002982)	ASPG (ENSCJPG00005002984)	KIF26A (ENSCJPG00005002989)	TMEM179 (ENSCJPG00005003011)	ENSCJPG00005003014	ENSCJPG00005003016	ADSS1 (ENSCJPG00005003017)	SIVA1 (ENSCJPG00005003020)	AKT1 (ENSCJPG00005003022)	ENSCJPG00005003023	CEP170B (ENSCJPG00005003032)	PLD4 (ENSCJPG00005003041)	ENSCJPG00005003045	CLBA1 (ENSCJPG00005003050) ##22	ENSCJPG00005003052 ##23	CDCA4 (ENSCJPG00005003054) ##23	ENSCJPG00005003057	JAG2 (ENSCJPG00005003061)	NUDT14 (ENSCJPG00005003070)	ENSCJPG00005003086	ENSCJPG00005003091	ENSCJPG00005003094	ENSCJPG00005003096	ENSCJPG00005003098	HSPA2 (ENSCJPG00005003100)	ZBTB1 (ENSCJPG00005003101)	ZBTB25 (ENSCJPG00005003102)	ENSCJPG00005003104	MTHFD1 (ENSCJPG00005003119)
Phasianidae_b	ANCESTRAL SPECIES	3	ENSGT00940000153463.a	ENSGT01030000235387	ENSGT00940000157035	ENSGT00390000002089.b	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00940000163336.g.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Chicken	MODERN SPECIES	34	C14orf2 (ENSGALG00010016066)	TDRD9 (ENSGALG00010016086)	RD3L (ENSGALG00010016115)	ASPG (ENSGALG00010016159)	KIF26A (ENSGALG00010016247)	TMEM179 (ENSGALG00010016897)	INF2 (ENSGALG00010017283)	ADSS1 (ENSGALG00010017318)	SIVA1 (ENSGALG00010017340)	AKT1 (ENSGALG00010017364)	ENSGALG00010019906	CEP170B (ENSGALG00010019967)	PLD4 (ENSGALG00010019994)	ENSGALG00010020003	ENSGALG00010020018	CLBA1 (ENSGALG00010016783) ##22	ENSGALG00010016834 ##23	CDCA4 (ENSGALG00010016885) ##23	GPR132 (ENSGALG00010019816)	JAG2 (ENSGALG00010019830)	NUDT14 (ENSGALG00010019713)	BRF1 (ENSGALG00010017110)	BTBD6 (ENSGALG00010017119)	PPP1R36 (ENSGALG00010017463)	HSPA2 (ENSGALG00010017470)	ZBTB1 (ENSGALG00010017520)	ZBTB25 (ENSGALG00010017543)	ENSGALG00010017576	MTHFD1 (ENSGALG00010017583)	ESR2 (ENSGALG00010017591)	SYNE2 (ENSGALG00010017621)
Turkey	MODERN SPECIES	25	TDRD9 (ENSMGAG00000013431)	RD3L (ENSMGAG00000019047)	ASPG (ENSMGAG00000013435)	KIF26A (ENSMGAG00000013441)	TMEM179 (ENSMGAG00000013443)	ENSMGAG00000013449	ENSMGAG00000017690	ADSS1 (ENSMGAG00000013451)	ENSMGAG00000017846	AKT1 (ENSMGAG00000013444)	ENSMGAG00000015389	CEP170B (ENSMGAG00000013455)	PLD4 (ENSMGAG00000013458)	ENSMGAG00000017134	ENSMGAG00000018051	ENSMGAG00000013464 ##22	CDCA4 (ENSMGAG00000019799) ##23	ENSMGAG00000015390	JAG2 (ENSMGAG00000013468)	NUDT14 (ENSMGAG00000013489)	BRF1 (ENSMGAG00000013493)	BTBD6 (ENSMGAG00000013496)	HSPA2 (ENSMGAG00000015391)	ZBTB1 (ENSMGAG00000015392)	ZBTB25 (ENSMGAG00000013502)	AKAP5 (ENSMGAG00000013504)	MTHFD1 (ENSMGAG00000013505)	ESR2 (ENSMGAG00000013507)	SYNE2 (ENSMGAG00000013516)	SGPP1 (ENSMGAG00000013534)	WDR89 (ENSMGAG00000013536)
African ostrich	MODERN SPECIES	631	RD3L (ENSSCUG00000009360)	TDRD9 (ENSSCUG00000009364)	ASPG (ENSSCUG00000009367)	KIF26A (ENSSCUG00000009371)	ENSSCUG00000009381	TMEM179 (ENSSCUG00000009385)	INF2 (ENSSCUG00000009391)	ADSS1 (ENSSCUG00000009406)	ENSSCUG00000009419	AKT1 (ENSSCUG00000009423)	ENSSCUG00000009427	CEP170B (ENSSCUG00000009437)	PLD4 (ENSSCUG00000009447)	ENSSCUG00000009451	ENSSCUG00000009454	CLBA1 (ENSSCUG00000009461) ##22	ENSSCUG00000009463 ##23	CDCA4 (ENSSCUG00000009467) ##23	ENSSCUG00000009470	JAG2 (ENSSCUG00000009476)	NUDT14 (ENSSCUG00000009485)	BRF1 (ENSSCUG00000009496)	BTBD6 (ENSSCUG00000009499)	ENSSCUG00000009504	HSPA2 (ENSSCUG00000009508)	ZBTB1 (ENSSCUG00000009510)	ZBTB25 (ENSSCUG00000009512)	MTHFD1 (ENSSCUG00000009515)	ESR2 (ENSSCUG00000009518)	SYNE2 (ENSSCUG00000009530)
Australian saltwater crocodile	MODERN SPECIES	64	PPP1R13B (ENSCPRG00005015869)	ENSCPRG00005015875	TDRD9 (ENSCPRG00005015883)	RD3L (ENSCPRG00005015908)	ASPG (ENSCPRG00005015909)	KIF26A (ENSCPRG00005015914)	TMEM179 (ENSCPRG00005015921)	INF2 (ENSCPRG00005015924)	ADSS1 (ENSCPRG00005015931)	ENSCPRG00005015958	AKT1 (ENSCPRG00005015965)	ENSCPRG00005015980	CEP170B (ENSCPRG00005015985)	PLD4 (ENSCPRG00005015991)	ENSCPRG00005015998	CLBA1 (ENSCPRG00005016007) ##22	ENSCPRG00005016008 ##23	ENSCPRG00005016010	JAG2 (ENSCPRG00005016017)	NUDT14 (ENSCPRG00005016074)	BRF1 (ENSCPRG00005016078)	ENSCPRG00005016085	ENSCPRG00005016087	PPP1R36 (ENSCPRG00005016089)	HSPA2 (ENSCPRG00005016094)	ZBTB1 (ENSCPRG00005016100)	ZBTB25 (ENSCPRG00005016106)	AKAP5 (ENSCPRG00005016108)	MTHFD1 (ENSCPRG00005016135)	ESR2 (ENSCPRG00005016580)	SYNE2 (ENSCPRG00005016617)
Cryptodira	ANCESTRAL SPECIES	3	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720
Testudinoidea	ANCESTRAL SPECIES	3	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.e.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Emydidae	ANCESTRAL SPECIES	43	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058.a	ENSGT00950000183059.b.a.a	ENSGT01030000236029	ENSGT00940000163336.f	ENSGT00940000163336.e.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Three-toed box turtle	MODERN SPECIES	87	PPP1R13B (ENSTMTG00000016842)	ENSTMTG00000016912	RD3L (ENSTMTG00000016920)	TDRD9 (ENSTMTG00000016940)	ASPG (ENSTMTG00000017026)	KIF26A (ENSTMTG00000017129)	TMEM179 (ENSTMTG00000017156)	INF2 (ENSTMTG00000017189)	ADSS1 (ENSTMTG00000017241)	SIVA1 (ENSTMTG00000017250)	AKT1 (ENSTMTG00000017269)	ENSTMTG00000017293	CEP170B (ENSTMTG00000017305)	ENSTMTG00000014619	ENSTMTG00000014643	CLBA1 (ENSTMTG00000014734) ##22	ENSTMTG00000014738 ##23	CDCA4 (ENSTMTG00000014750) ##23	ENSTMTG00000014757	JAG2 (ENSTMTG00000014808)	NUDT14 (ENSTMTG00000015234)	BRF1 (ENSTMTG00000015248)	BTBD6 (ENSTMTG00000015290)	PPP1R36 (ENSTMTG00000015298)	HSPA2 (ENSTMTG00000015317)	ZBTB1 (ENSTMTG00000015325)	ENSTMTG00000015338	AKAP5 (ENSTMTG00000015349)	MTHFD1 (ENSTMTG00000015364)	ENSTMTG00000015416	ESR2 (ENSTMTG00000015564)
painted turtle	MODERN SPECIES	701	ENSCPBG00000022328	ESR2 (ENSCPBG00000022325)	SYNE2 (ENSCPBG00000022163)	SGPP1 (ENSCPBG00000022031)	WDR89 (ENSCPBG00000022026)	PPP2R5E (ENSCPBG00000020473)	GPHB5 (ENSCPBG00000020424)	RHOJ (ENSCPBG00000020422)	KCNH5 (ENSCPBG00000020418)	ENSCPBG00000020417	SYT16 (ENSCPBG00000020415)	ENSCPBG00000020411	HIF1A (ENSCPBG00000020405)	PRKCH (ENSCPBG00000020401)	ENSCPBG00000020396	CLBA1 (ENSCPBG00000020388) ##22	ENSCPBG00000020387 ##23	CDCA4 (ENSCPBG00000020385) ##23	ENSCPBG00000020384	JAG2 (ENSCPBG00000020376)	ENSCPBG00000020372	NUDT14 (ENSCPBG00000020368)	BTBD6 (ENSCPBG00000020362)	BRF1 (ENSCPBG00000020355)	PPP1R36 (ENSCPBG00000020341)	ENSCPBG00000020336	EXOC3L4 (ENSCPBG00000020331)	TNFAIP2 (ENSCPBG00000020328)	ENSCPBG00000020327	EIF5 (ENSCPBG00000020321)	MARK3 (ENSCPBG00000020304)
Testudinidae	ANCESTRAL SPECIES	37	ENSGT01030000235387	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b.a	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336.e.a	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00940000160944	ENSGT00940000166988
Goode s thornscrub tortoise	MODERN SPECIES	18	RD3L (ENSGEVG00005002616)	TDRD9 (ENSGEVG00005002591)	ASPG (ENSGEVG00005002564)	TMEM179 (ENSGEVG00005002509)	INF2 (ENSGEVG00005002490)	ADSS1 (ENSGEVG00005002439)	SIVA1 (ENSGEVG00005002396)	AKT1 (ENSGEVG00005002380)	ENSGEVG00005002346	ENSGEVG00005002335	PLD4 (ENSGEVG00005002319)	ENSGEVG00005002307	ENSGEVG00005002298	ENSGEVG00005002283	ENSGEVG00005002247	CLBA1 (ENSGEVG00005002207) ##22	ENSGEVG00005002196 ##23	CDCA4 (ENSGEVG00005002190) ##23	ENSGEVG00005002182	JAG2 (ENSGEVG00005002116)	ENSGEVG00005002065	BTBD6 (ENSGEVG00005002039)	BRF1 (ENSGEVG00005001986)	PPP1R36 (ENSGEVG00005001959)	HSPA2 (ENSGEVG00005001893)	ZBTB1 (ENSGEVG00005001885)	ENSGEVG00005001877	AKAP5 (ENSGEVG00005001869)	MTHFD1 (ENSGEVG00005001817)	ENSGEVG00005001784	ESR2 (ENSGEVG00005001763)
Abingdon island giant tortoise	MODERN SPECIES	2662										SIVA1 (ENSCABG00000006764)	AKT1 (ENSCABG00000006741)	ENSCABG00000006739	ENSCABG00000006738	ENSCABG00000006737	ENSCABG00000006695	CLBA1 (ENSCABG00000006692) ##22	ENSCABG00000006691 ##23	CDCA4 (ENSCABG00000006690) ##23	ENSCABG00000006689	JAG2 (ENSCABG00000006688)
Lepidosauria	ANCESTRAL SPECIES	32								ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00950000183059.b.a.a	ENSGT00870000136707	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Episquamata	ANCESTRAL SPECIES		ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.f	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00940000163336	ENSGT00870000136707	ENSGT00950000183059.b.a.a	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.f	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00940000163336	ENSGT00870000136707	ENSGT00950000183059.b.a.a	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00940000155720	ENSGT00390000010349.a.a	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Common wall lizard	MODERN SPECIES		RD3L (ENSPMRG00000005767)	TDRD9 (ENSPMRG00000005698)	ASPG (ENSPMRG00000005655)	TMEM179 (ENSPMRG00000005643)	INF2 (ENSPMRG00000005621)	ENSPMRG00000005608	ENSPMRG00000005597	ENSPMRG00000005582	ENSPMRG00000005569	PLD4 (ENSPMRG00000005498)	CEP170B (ENSPMRG00000005451)	ENSPMRG00000005440	AKT1 (ENSPMRG00000005409)	SIVA1 (ENSPMRG00000005397)	ADSS1 (ENSPMRG00000005381)	CLBA1 (ENSPMRG00000005367) ##22	ENSPMRG00000005361 ##23	CDCA4 (ENSPMRG00000005352) ##23	ENSPMRG00000005347	ENSPMRG00000005343	JAG2 (ENSPMRG00000005299)	NUDT14 (ENSPMRG00000005287)	BTBD6 (ENSPMRG00000005277)	BRF1 (ENSPMRG00000005265)	PPP1R36 (ENSPMRG00000005257)	HSPA2 (ENSPMRG00000005250)	ZBTB1 (ENSPMRG00000005245)	ENSPMRG00000005243	ZBTB25 (ENSPMRG00000005241)	AKAP5 (ENSPMRG00000005239)	MTHFD1 (ENSPMRG00000005227)
Argentine black and white tegu	MODERN SPECIES	35	RD3L (ENSSMRG00000002085)	TDRD9 (ENSSMRG00000002065)	ENSSMRG00000001864	ENSSMRG00000001839	KIF26A (ENSSMRG00000001803)	TMEM179 (ENSSMRG00000001764)	ENSSMRG00000001761	ENSSMRG00000001760	ENSSMRG00000001708	PLD4 (ENSSMRG00000001692)	CEP170B (ENSSMRG00000001647)	ENSSMRG00000001638	AKT1 (ENSSMRG00000001630)	SIVA1 (ENSSMRG00000001626)	ADSS1 (ENSSMRG00000001616)	CLBA1 (ENSSMRG00000001587) ##22	ENSSMRG00000001572 ##23	CDCA4 (ENSSMRG00000001569) ##23	ENSSMRG00000001566	JAG2 (ENSSMRG00000001501)	NUDT14 (ENSSMRG00000001462)
Toxicofera	ANCESTRAL SPECIES	5	ENSGT01040000244769	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.f	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00940000163336	ENSGT00950000183059.b.a.a	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Elapidae	ANCESTRAL SPECIES	3	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00940000163336	ENSGT00870000136707	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944.d	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887.k	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Elapidae_a	ANCESTRAL SPECIES	10	ENSGT00930000151053	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00870000136707	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944.d	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887.k	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Acanthophiinae	ANCESTRAL SPECIES	13	ENSGT00930000151053	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610.e	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00870000136707	ENSGT00940000157058	ENSGT00940000155092.a	ENSGT00940000158752	ENSGT00390000004842	ENSGT00390000015553.a.b	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT00950000183136.a.b	ENSGT00940000160944.d	ENSGT00940000154045.b	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813	ENSGT00940000157501	ENSGT00940000159887.k	ENSGT00390000019941	ENSGT00940000154746	ENSGT00940000156116.C	ENSGT00940000154656
Eastern brown snake	MODERN SPECIES	10	XRCC3 (ENSPTXG00000014928)	ZFYVE21 (ENSPTXG00000014932)	PPP1R13B (ENSPTXG00000014936)	RD3L (ENSPTXG00000014943)	TDRD9 (ENSPTXG00000014945)	ASPG (ENSPTXG00000014946)	KIF26A (ENSPTXG00000014948)	TMEM179 (ENSPTXG00000014949)	INF2 (ENSPTXG00000014950)	ENSPTXG00000014951	CEP170B (ENSPTXG00000014952)	ENSPTXG00000014953	AKT1 (ENSPTXG00000014954)	SIVA1 (ENSPTXG00000014955)	ADSS1 (ENSPTXG00000014956)	CLBA1 (ENSPTXG00000014957) ##22	ENSPTXG00000014958 ##23	CDCA4 (ENSPTXG00000014959) ##23	ENSPTXG00000014960	JAG2 (ENSPTXG00000014961)	NUDT14 (ENSPTXG00000014965)	BRF1 (ENSPTXG00000014967)	BTBD6 (ENSPTXG00000014968)	PPP1R36 (ENSPTXG00000014969)	HSPA2 (ENSPTXG00000014970)	ZBTB1 (ENSPTXG00000014971)	ZBTB25 (ENSPTXG00000014972)	ENSPTXG00000014973	MTHFD1 (ENSPTXG00000014974)	ESR2 (ENSPTXG00000014975)	SYNE2 (ENSPTXG00000014976)
Mainland tiger snake	MODERN SPECIES	31	ZFYVE21 (ENSNSUG00000018257)	PPP1R13B (ENSNSUG00000018258)	RD3L (ENSNSUG00000018260)	TDRD9 (ENSNSUG00000018261)	ASPG (ENSNSUG00000018262)	KIF26A (ENSNSUG00000018264)	TMEM179 (ENSNSUG00000018265)	INF2 (ENSNSUG00000018266)	ENSNSUG00000018267	ENSNSUG00000018268	ENSNSUG00000018269	AKT1 (ENSNSUG00000018270)	SIVA1 (ENSNSUG00000018271)	ENSNSUG00000018272	ENSNSUG00000018273	CLBA1 (ENSNSUG00000018274) ##22	ENSNSUG00000018275 ##23	CDCA4 (ENSNSUG00000018276) ##23	ENSNSUG00000018277	ENSNSUG00000018278	JAG2 (ENSNSUG00000018279)	NUDT14 (ENSNSUG00000018280)	ENSNSUG00000018281	ENSNSUG00000018282	BTBD6 (ENSNSUG00000018283)	ENSNSUG00000018284	PPP1R36 (ENSNSUG00000018285)	ENSNSUG00000018286	HSPA2 (ENSNSUG00000018287)	ZBTB1 (ENSNSUG00000018288)	ENSNSUG00000018289
Blue-lipped sea krait	MODERN SPECIES	866														ENSLLTG00000002575	ADSS1 (ENSLLTG00000002563)	ENSLLTG00000002556 ##22	ENSLLTG00000002545 ##23
Indian cobra	MODERN SPECIES		ZFYVE21 (ENSNNAG00000001939)	PPP1R13B (ENSNNAG00000001963)	TDRD9 (ENSNNAG00000002011)	RD3L (ENSNNAG00000002097)	ASPG (ENSNNAG00000002110)	KIF26A (ENSNNAG00000002137)	TMEM179 (ENSNNAG00000002157)	INF2 (ENSNNAG00000002215)	ENSNNAG00000002460	ENSNNAG00000002468	ENSNNAG00000002476	ENSNNAG00000002480	AKT1 (ENSNNAG00000002487)	SIVA1 (ENSNNAG00000002500)	ADSS1 (ENSNNAG00000002509)	CLBA1 (ENSNNAG00000002524) ##22	ENSNNAG00000002534 ##23	CDCA4 (ENSNNAG00000002545) ##23	ENSNNAG00000002550	JAG2 (ENSNNAG00000002568)	NUDT14 (ENSNNAG00000002591)	BRF1 (ENSNNAG00000002602)	BTBD6 (ENSNNAG00000002616)	ENSNNAG00000002626	ENSNNAG00000002649	ZBTB1 (ENSNNAG00000002656)	ZBTB25 (ENSNNAG00000002662)	AKAP5 (ENSNNAG00000002668)	MTHFD1 (ENSNNAG00000002995)	ESR2 (ENSNNAG00000009689)	ENSNNAG00000009799
Lizard	MODERN SPECIES		ENSACAG00000041293	ENSACAG00000010962	ENSACAG00000042276	KIF26A (ENSACAG00000011013)	TMEM179 (ENSACAG00000041902)	ENSACAG00000035927	INF2 (ENSACAG00000011137)	ENSACAG00000011202	PLD4 (ENSACAG00000011309)	CEP170B (ENSACAG00000011394)	ZBTB42 (ENSACAG00000011451)	ENSACAG00000037867	AKT1 (ENSACAG00000011455)	SIVA1 (ENSACAG00000040990)	ADSS1 (ENSACAG00000011672)	ENSACAG00000025647 ##22	ENSACAG00000035107 ##23	ENSACAG00000011840 ##23	ENSACAG00000011854	PRKCH (ENSACAG00000006398)	HIF1A (ENSACAG00000016205)	SNAPC1 (ENSACAG00000016191)	SYT16 (ENSACAG00000016179)	ENSACAG00000016178	KCNH5 (ENSACAG00000016161)	RHOJ (ENSACAG00000037956)	gpb5 (ENSACAG00000016144)	PPP2R5E (ENSACAG00000016037)	WDR89 (ENSACAG00000016032)	ENSACAG00000044528	SGPP1 (ENSACAG00000016008)
tuatara	MODERN SPECIES	1795														CEP170B (ENSSPUG00000011109)	PLD4 (ENSSPUG00000011174)	CLBA1 (ENSSPUG00000011189) ##22	CDCA4 (ENSSPUG00000011199) ##23	ENSSPUG00000011208
Anura	ANCESTRAL SPECIES	22	ENSGT00940000159639	ENSGT00940000153463.a	ENSGT01060000248685	ENSGT00390000002089.b	ENSGT00940000157035	ENSGT00390000001610	ENSGT00940000159075.A	ENSGT00510000048283.d	ENSGT00940000155691.d	ENSGT00390000015553.a.b	ENSGT00390000004842	ENSGT00940000158752	ENSGT00940000155092.a	ENSGT00940000157058	ENSGT00940000163336	ENSGT00940000154186.b ##22	ENSGT00530000063867.a.a ##23	ENSGT00530000063867.a.b ##23	ENSGT01100000263537.b.b.c.b	ENSGT00950000183136.a.b	ENSGT00940000160944	ENSGT00390000010349.a.a	ENSGT00940000155720	ENSGT00390000012412	ENSGT00940000154813.j	ENSGT00940000157501	ENSGT00940000159887	ENSGT01010000229409	ENSGT00940000154746	ENSGT00390000012924.b	ENSGT00940000156116.C
Frog	MODERN SPECIES	8	ppp1r13b (ENSXETG00000023064)	ENSXETG00000039943	ENSXETG00000046748	tdrd9 (ENSXETG00000023069)	rd3l (ENSXETG00000037614)	ENSXETG00000036467	aspg (ENSXETG00000023076)	kif26a (ENSXETG00000023080)	tmem179 (ENSXETG00000042362)	inf2 (ENSXETG00000008613)	adss1 (ENSXETG00000024695)	siva1 (ENSXETG00000024697)	akt1 (ENSXETG00000008603)	cep170b (ENSXETG00000002232)	ENSXETG00000034466	clba1 (ENSXETG00000033448) ##22	ENSXETG00000049252 ##23	cdca4 (ENSXETG00000006803) ##23	gpr132 (ENSXETG00000033354)	jag2 (ENSXETG00000033099)	brf1 (ENSXETG00000022549)	btbd6 (ENSXETG00000022556)	zbtb1 (ENSXETG00000035055)	hspa2 (ENSXETG00000022536)	zbtb25 (ENSXETG00000022529)	ENSXETG00000041149	mthfd1 (ENSXETG00000022511)	ENSXETG00000038605	esr2 (ENSXETG00000007257)	syne2 (ENSXETG00000007253)	wdr89 (ENSXETG00000003583)