Mus	ANCESTRAL SPECIES	14	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #9	ENSGT00950000183152.A #8	ENSGT00940000155345 #11	ENSGT00940000153899.b.b #13	ENSGT00940000157597 #14	ENSGT00940000161234 #15	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #34	ENSGT00390000018052.s #33	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #9	ENSGT00950000183152.A #8	ENSGT00940000155345 #11	ENSGT00940000153899.b.b #13	ENSGT00940000157597 #14	ENSGT00940000161234 #15	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #34	ENSGT00390000018052.s #33	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #9	ENSGT00950000183152.A #8	ENSGT00940000155345 #11	ENSGT00940000153899.b.b #13	ENSGT00940000157597 #14	ENSGT00940000161234 #15	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #34	ENSGT00390000018052.s #33	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000153408.B	ENSGT00940000157824	ENSGT00550000074956 #7	ENSGT00390000012029 #9	ENSGT00950000183152.A #8	ENSGT00940000155345 #11	ENSGT00940000153899.b.b #13	ENSGT00940000157597 #14	ENSGT00940000161234 #15	ENSGT00390000016551 #16	ENSGT00530000063410.a #17	ENSGT00940000153464.B #18	ENSGT00390000000583 #19	ENSGT00950000183050.b.b.a #20	ENSGT00940000155337 #21	ENSGT00940000154186.a #22	ENSGT00530000063867.b #23	ENSGT00940000157081 #24	ENSGT00810000125473.A #25	ENSGT00940000154958 #26	ENSGT00940000154556 #27	ENSGT00940000156841 #28	ENSGT00940000156327 #30	ENSGT00390000009597 #31	ENSGT00390000015405 #32	ENSGT00950000183091.A.b #34	ENSGT00390000018052.s #33	ENSGT00940000156530.c #35	ENSGT00390000004284 #36	ENSGT00940000157885 #37	ENSGT00390000012248
spretus	MODERN SPECIES	2	Cct4 (MGP_SPRETEiJ_G0016977) #7	MGP_SPRETEiJ_G0016976 #8	Commd1 (MGP_SPRETEiJ_G0016975) #9	MGP_SPRETEiJ_G0016974 #10	B3gnt2 (MGP_SPRETEiJ_G0016973) #11	MGP_SPRETEiJ_G0016972 #12	Tmem17 (MGP_SPRETEiJ_G0016971) #13	Ehbp1 (MGP_SPRETEiJ_G0016970) #14	Otx1 (MGP_SPRETEiJ_G0016969) #15	Wdpcp (MGP_SPRETEiJ_G0016968) #16	Mdh1 (MGP_SPRETEiJ_G0016967) #17	Ugp2 (MGP_SPRETEiJ_G0016966) #18	Vps54 (MGP_SPRETEiJ_G0016965) #19	Peli1 (MGP_SPRETEiJ_G0016964) #20	Lgalsl (MGP_SPRETEiJ_G0016963) #21	Aftph (MGP_SPRETEiJ_G0016962) #22	Sertad2 (MGP_SPRETEiJ_G0016961) #23	Slc1a4 (MGP_SPRETEiJ_G0016960) #24	Cep68 (MGP_SPRETEiJ_G0016959) #25	Rab1a (MGP_SPRETEiJ_G0016958) #26	Actr2 (MGP_SPRETEiJ_G0016957) #27	Spred2 (MGP_SPRETEiJ_G0016956) #28	Asb12 (MGP_SPRETEiJ_G0016955) #29	Meis1 (MGP_SPRETEiJ_G0016954) #30	Etaa1 (MGP_SPRETEiJ_G0016953) #31	C1d (MGP_SPRETEiJ_G0016952) #32	Pno1 (MGP_SPRETEiJ_G0016951) #33	Dnaaf10 (MGP_SPRETEiJ_G0016950) #34	Ppp3r1 (MGP_SPRETEiJ_G0016949) #35	MGP_SPRETEiJ_G0016948 #36	Plek (MGP_SPRETEiJ_G0016947) #37
Steppe mouse	MODERN SPECIES	3178															ENSMSIG00000013501	Aftph (ENSMSIG00000013440) #22	Sertad2 (ENSMSIG00000013434) #23	ENSMSIG00000013417	Slc1a4 (ENSMSIG00000013384) #24	Cep68 (ENSMSIG00000013342) #25	Rab1a (ENSMSIG00000013288) #26	Actr2 (ENSMSIG00000013218) #27	Spred2 (ENSMSIG00000013142) #28	ENSMSIG00000013132	ENSMSIG00000013123	Meis1 (ENSMSIG00000012755) #30
Mouse	MODERN SPECIES	2	Xpo1 (ENSMUSG00000020290)	Fam161a (ENSMUSG00000049811)	Cct4 (ENSMUSG00000007739) #7	Commd1 (ENSMUSG00000051355) #9	Commd1b (ENSMUSG00000098650)	B3gnt2 (ENSMUSG00000051650) #11	Tmem17 (ENSMUSG00000049904) #13	Ehbp1 (ENSMUSG00000042302) #14	Otx1 (ENSMUSG00000005917) #15	Wdpcp (ENSMUSG00000020319) #16	Mdh1 (ENSMUSG00000020321) #17	Ugp2 (ENSMUSG00000001891) #18	Vps54 (ENSMUSG00000020128) #19	Peli1 (ENSMUSG00000020134) #20	Lgalsl (ENSMUSG00000042363) #21	Aftph (ENSMUSG00000049659) #22	Sertad2 (ENSMUSG00000049800) #23	Slc1a4 (ENSMUSG00000020142) #24	Cep68 (ENSMUSG00000044066) #25	Rab1a (ENSMUSG00000020149) #26	Actr2 (ENSMUSG00000020152) #27	Spred2 (ENSMUSG00000045671) #28	Meis1 (ENSMUSG00000020160) #30	Etaa1 (ENSMUSG00000016984) #31	C1d (ENSMUSG00000000581) #32	Pno1 (ENSMUSG00000020116) #33	Dnaaf10 (ENSMUSG00000078970) #34	Ppp3r1 (ENSMUSG00000033953) #35	Cnrip1 (ENSMUSG00000044629) #36	Plek (ENSMUSG00000020120) #37	Fbxo48 (ENSMUSG00000044966)
Ryukyu mouse	MODERN SPECIES	2	Cct4 (MGP_CAROLIEiJ_G0016134) #7	MGP_CAROLIEiJ_G0016133 #8	MGP_CAROLIEiJ_G0016132 #9	B3gnt2 (MGP_CAROLIEiJ_G0016131) #11	MGP_CAROLIEiJ_G0016130 #9	MGP_CAROLIEiJ_G0016129 #12	Tmem17 (MGP_CAROLIEiJ_G0016128) #13	Ehbp1 (MGP_CAROLIEiJ_G0016127) #14	Otx1 (MGP_CAROLIEiJ_G0016126) #15	Wdpcp (MGP_CAROLIEiJ_G0016125) #16	Mdh1 (MGP_CAROLIEiJ_G0016124) #17	Ugp2 (MGP_CAROLIEiJ_G0016123) #18	Vps54 (MGP_CAROLIEiJ_G0016122) #19	Peli1 (MGP_CAROLIEiJ_G0016121) #20	Gm5065 (MGP_CAROLIEiJ_G0016120) #21	Aftph (MGP_CAROLIEiJ_G0016119) #22	Sertad2 (MGP_CAROLIEiJ_G0016118) #23	Slc1a4 (MGP_CAROLIEiJ_G0016117) #24	Cep68 (MGP_CAROLIEiJ_G0016116) #25	Rab1a (MGP_CAROLIEiJ_G0016115) #26	Actr2 (MGP_CAROLIEiJ_G0016114) #27	Spred2 (MGP_CAROLIEiJ_G0016113) #28	Meis1 (MGP_CAROLIEiJ_G0016112) #30	Etaa1 (MGP_CAROLIEiJ_G0016111) #31	C1d (MGP_CAROLIEiJ_G0016110) #32	Pno1 (MGP_CAROLIEiJ_G0016109) #33	Dnaaf10 (MGP_CAROLIEiJ_G0016108) #34	Ppp3r1 (MGP_CAROLIEiJ_G0016107) #35	Cnrip1 (MGP_CAROLIEiJ_G0016106) #36	Plek (MGP_CAROLIEiJ_G0016105) #37	Fbxo48 (MGP_CAROLIEiJ_G0016104)
Shrew mouse	MODERN SPECIES	4	Commd1 (MGP_PahariEiJ_G0016757) #9	MGP_PahariEiJ_G0016758 #9	MGP_PahariEiJ_G0016759 #8	B3gnt2 (MGP_PahariEiJ_G0016760) #11	MGP_PahariEiJ_G0016761 #12	Tmem17 (MGP_PahariEiJ_G0016762) #13	Ehbp1 (MGP_PahariEiJ_G0016763) #14	Otx1 (MGP_PahariEiJ_G0016764) #15	MGP_PahariEiJ_G0016765 #16	Mdh1 (MGP_PahariEiJ_G0016766) #17	Ugp2 (MGP_PahariEiJ_G0016767) #18	Vps54 (MGP_PahariEiJ_G0016768) #19	Peli1 (MGP_PahariEiJ_G0016769) #20	MGP_PahariEiJ_G0016770 #21	Lgalsl (MGP_PahariEiJ_G0016771) #21	Aftph (MGP_PahariEiJ_G0016772) #22	Sertad2 (MGP_PahariEiJ_G0016773) #23	Slc1a4 (MGP_PahariEiJ_G0016774) #24	Cep68 (MGP_PahariEiJ_G0016775) #25	Rab1a (MGP_PahariEiJ_G0016776) #26	Actr2 (MGP_PahariEiJ_G0016777) #27	Spred2 (MGP_PahariEiJ_G0016778) #28	Meis1 (MGP_PahariEiJ_G0016779) #30	Etaa1 (MGP_PahariEiJ_G0016780) #31	C1d (MGP_PahariEiJ_G0016781) #32	Dnaaf10 (MGP_PahariEiJ_G0016782) #34	Pno1 (MGP_PahariEiJ_G0016783) #33	Ppp3r1 (MGP_PahariEiJ_G0016784) #35	MGP_PahariEiJ_G0016785 #36	Plek (MGP_PahariEiJ_G0016786) #37	Fbxo48 (MGP_PahariEiJ_G0016787)