Vertebrata	DUPLICATION
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638
Actinopterygii	ANCESTRAL SPECIES	55								ENSGT00940000157846 #12	ENSGT00390000012017	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C.b.a ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00950000183181.A.a	ENSGT00940000162787	ENSGT00390000003939	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00880000138034	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846 #12	ENSGT00390000012017	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C.b.a ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00730000110943.B.c	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638
Osteoglossocephalai	ANCESTRAL SPECIES	31	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029.a.b	ENSGT00940000177029.b	ENSGT00940000154292.a.b #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000176000	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00390000018245	ENSGT00940000164251	ENSGT00940000164218	ENSGT00940000155265.b.b
Clupeocephala	ANCESTRAL SPECIES	47	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00990000204854 #9	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES	17	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00990000204854 #9	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00390000003939	ENSGT00990000208446	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00990000204854 #9	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b #37
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	273	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00990000208446	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24
Salmoninae_a	ANCESTRAL SPECIES	109								ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.b #32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.h ##36	ENSGT00940000155669.mc.b	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b	ENSGT00940000155930.i.b
Salmo	ANCESTRAL SPECIES	31							ENSGT00390000008727.a.a.d.e #7	ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.b #32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.g.b.a #36	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b	ENSGT00940000155930.i.b	ENSGT00940000154711.a.a.f.a
Atlantic salmon	MODERN SPECIES		ENSSSAG00000086413 #7	kcnk1b (ENSSSAG00000083691) #8	ENSSSAG00000056942 #9	ENSSSAG00000056522 #10	agpat4 (ENSSSAG00000056486) #11	ENSSSAG00000047444 #12	ENSSSAG00000025627 #13	ENSSSAG00000092780 #14	ENSSSAG00000091768 #15	ENSSSAG00000103525 #16	ENSSSAG00000103901 #17	ENSSSAG00000015935 #18	ENSSSAG00000101951 #19	PSME4 (ENSSSAG00000043370) #20	ERLEC1 (ENSSSAG00000043168) #21	NRXN1 (ENSSSAG00000004275) #22	LHCGR (ENSSSAG00000055360) #23	gtf2a1l (ENSSSAG00000088164) #24	STON1 (ENSSSAG00000003728) #25	ppp1r21 (ENSSSAG00000003694) #26	ENSSSAG00000089922 #27	ENSSSAG00000043666 #28	ENSSSAG00000111856 #29	ENSSSAG00000118030 #30	ENSSSAG00000003555 #31	itga9 (ENSSSAG00000003063) #32	ENSSSAG00000103405 #33	ENSSSAG00000002972 #34	ENSSSAG00000094286 #35	ENSSSAG00000101996 #36	ENSSSAG00000002924 #37
River trout	MODERN SPECIES	9	ENSSTUG00000021549	ENSSTUG00000021589	SLC35F3 (ENSSTUG00000021596) #7	ENSSTUG00000021648	kcnk1b (ENSSTUG00000021658) #8	ENSSTUG00000021823 #10	ENSSTUG00000027638 #9	agpat4 (ENSSTUG00000027647) #11	ENSSTUG00000027697 #12	ENSSTUG00000028029	ENSSTUG00000028059	PSME4 (ENSSTUG00000028118) #20	GPR75 (ENSSTUG00000029230)	erlec1 (ENSSTUG00000029257) #21	ENSSTUG00000029465	NRXN1 (ENSSTUG00000029529) #22	ENSSTUG00000031573	ENSSTUG00000031581	ENSSTUG00000031598	ENSSTUG00000031614	LHCGR (ENSSTUG00000031622) #23	gtf2a1l (ENSSTUG00000031656) #24	ENSSTUG00000031680	STON1 (ENSSTUG00000031687) #25	ppp1r21 (ENSSTUG00000031776) #26	FOXN2 (ENSSTUG00000033587)	ENSSTUG00000033616 #28	KCNK12 (ENSSTUG00000033822) #29	GOLGA4 (ENSSTUG00000033860) #31	itga9 (ENSSTUG00000034021) #32	ENSSTUG00000034666 #34
Oncorhynchus	ANCESTRAL SPECIES	17							ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.b.a ##22	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.a.a ##32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.h ##36	ENSGT00940000155669.mc.b	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b	ENSGT00940000155930.i.b
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000052981	ENSOMYG00000024407	ENSOMYG00000024583 #12	ENSOMYG00000072637 ##13	ENSOMYG00000075183	ENSOMYG00000051807	ENSOMYG00000053929	ENSOMYG00000057002	PSME4 (ENSOMYG00000025175) #20	ENSOMYG00000077387	ENSOMYG00000026216	erlec1 (ENSOMYG00000026232) #21	ENSOMYG00000055620	ENSOMYG00000027535 ##22	ENSOMYG00000054114	NRXN1 (ENSOMYG00000026446) #22	LHCGR (ENSOMYG00000050586) #23	gtf2a1l (ENSOMYG00000037167) #24	STON1 (ENSOMYG00000037153) #25	ppp1r21 (ENSOMYG00000037105) #26	ENSOMYG00000048718	ENSOMYG00000037077	ENSOMYG00000034921 #28	ENSOMYG00000057037	ENSOMYG00000034742 #29	ENSOMYG00000034694 #31	itga9 (ENSOMYG00000034658) ##32	ENSOMYG00000034581 #34	ENSOMYG00000034628 #36	ENSOMYG00000034600	EPAS1 (ENSOMYG00000034554)
Oncorhynchus_a	ANCESTRAL SPECIES	13							ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.b.a ##22	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.a.a ##32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.g.b.b ##36	ENSGT00940000155669.mc.b	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b	ENSGT00940000155930.i.b
Chinook salmon	MODERN SPECIES		ENSOTSG00005026866	epas1b (ENSOTSG00005026875)	ENSOTSG00005029069	ENSOTSG00005029070	ENSOTSG00005029072	pcgf5a (ENSOTSG00005029077)	ENSOTSG00005029087 #37	ENSOTSG00005029089	ENSOTSG00005029093 ##36	ENSOTSG00005029102 #34	GOLGA4 (ENSOTSG00005029110) #31	PSME4 (ENSOTSG00005029152) #20	GPR75 (ENSOTSG00005035805)	erlec1 (ENSOTSG00005035877) #21	ENSOTSG00005036153 ##22	NRXN1 (ENSOTSG00005036190) #22	LHCGR (ENSOTSG00005036192) #23	gtf2a1l (ENSOTSG00005036193) #24	ENSOTSG00005036194 #25	ppp1r21 (ENSOTSG00005036205) #26	ENSOTSG00005039080	ENSOTSG00005039081	ENSOTSG00005039082	ENSOTSG00005039089 #28	KCNK12 (ENSOTSG00005039783) #29
Coho salmon	MODERN SPECIES	2								kcnk1b (ENSOKIG00005032111) #8	ENSOKIG00005032275 #10	agpat4 (ENSOKIG00005036311) #11	ENSOKIG00005036434 #9	ENSOKIG00005036450 #12	PSME4 (ENSOKIG00005036846) #20	GPR75 (ENSOKIG00005042312)	erlec1 (ENSOKIG00005042325) #21	NRXN1 (ENSOKIG00005042525) #22	ENSOKIG00005044766	ENSOKIG00005044777	LHCGR (ENSOKIG00005044786) #23	GTF2A1L (ENSOKIG00005044798) #24	PPP1R21 (ENSOKIG00005044830) #26	ENSOKIG00005045119	ENSOKIG00005045208 #28	KCNK12 (ENSOKIG00005046107) #29	GOLGA4 (ENSOKIG00005046116) #31	itga9 (ENSOKIG00005046299) ##32	ENSOKIG00005046838	ENSOKIG00005046845 #34	ENSOKIG00005046850 ##36	ENSOKIG00005046857	ANKRD1 (ENSOKIG00005046870) #37
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2581															ENSHHUG00000003767 #22	ENSHHUG00000003760 #22
Huchen	MODERN SPECIES	2581																ENSHHUG00000003767 #22	ENSHHUG00000003760 #22
Huchen	MODERN SPECIES	3081																ENSHHUG00000025095 #22
Salmoninae	ANCESTRAL SPECIES	19															ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.h.a.a ##22	ENSGT00940000157364.B.d ##23	ENSGT00940000158817.e ##25	ENSGT00390000006820.c ##26	ENSGT00940000159118.g	ENSGT00530000063425.a.a.a.b.i.a.a ##28	ENSGT00550000075024	ENSGT00940000161424.k.a ##29	ENSGT00730000111139.m ##31	ENSGT00940000156503.u ##32	ENSGT00830000128368.b.e ##34	ENSGT00940000156844.b.g.a ##36	ENSGT00940000155669.mc.a	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b.c ##37	ENSGT00940000155896.k.a
Huchen	MODERN SPECIES	2125																ENSHHUG00000024621 ##22
Salmoninae_a	ANCESTRAL SPECIES	38	ENSGT00530000064017.a.f	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00390000010434.b.d.b	ENSGT00510000049375.g	ENSGT00940000163723.A.f.a	ENSGT00940000165757.c.b.b	ENSGT00940000155293.a.a.i ##8	ENSGT00990000204854.d ##9	ENSGT00940000165701.g ##10	ENSGT00950000182836.b.b.b.b.l ##11	ENSGT00940000157846.c.c ##12	ENSGT00390000012017	ENSGT00390000011433.s.a.f ##20	ENSGT00530000063603.B.h ##21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.h.a.a ##22	ENSGT00940000157364.B.d ##23	ENSGT00940000158817.e ##25	ENSGT00390000006820.c ##26	ENSGT00940000159118.g	ENSGT00530000063425.a.a.a.b.i.a.a ##28	ENSGT00550000075024	ENSGT00940000161424.k.a ##29	ENSGT00730000111139.m ##31	ENSGT00940000156503.u ##32	ENSGT00940000157396.jc	ENSGT00830000128368.b.e ##34	ENSGT00940000156844.b.g.a ##36	ENSGT00940000155669.mc.a	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b.c ##37
Salmo	ANCESTRAL SPECIES	38	ENSGT00940000157049.c.b.a.a	ENSGT00530000064017.a.f	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00390000010434.b.d.b	ENSGT00510000049375.g	ENSGT00940000163723.A.f.a	ENSGT00940000165757.c.b.b	ENSGT00940000155293.a.a.i ##8	ENSGT00990000204854.d ##9	ENSGT00940000165701.g ##10	ENSGT00950000182836.b.b.b.b.l ##11	ENSGT00940000157846.c.c ##12	ENSGT00390000012017	ENSGT00390000011433.s.a.f ##20	ENSGT00530000063603.B.h ##21	ENSGT00940000154292.a.b.d.h.a.a ##22	ENSGT00940000157364.B.d ##23	ENSGT00940000158817.e ##25	ENSGT00390000006820.c ##26	ENSGT00940000159118.g	ENSGT00530000063425.a.a.a.b.i.a.a ##28	ENSGT00550000075024	ENSGT00940000161424.k.a ##29	ENSGT00730000111139.m ##31	ENSGT00940000156503.u ##32	ENSGT00940000157396.jc	ENSGT00830000128368.b.e ##34	ENSGT00940000156844.b.g.a ##36	ENSGT00940000155669.mc.a	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b.c ##37
River trout	MODERN SPECIES	1	ENSSTUG00000018821	zgc:171482 (ENSSTUG00000018804)	kcnk1b (ENSSTUG00000018792) ##8	ENSSTUG00000018776 ##9	ENSSTUG00000018149 ##10	agpat4 (ENSSTUG00000018116) ##11	ENSSTUG00000018109	THBS2 (ENSSTUG00000016312) ##12	ENSSTUG00000016231	ENSSTUG00000016224	ENSSTUG00000016069 ##20	erlec1 (ENSSTUG00000015971) ##21	ENSSTUG00000015961	ENSSTUG00000015951	ENSSTUG00000015938	nrxn1b (ENSSTUG00000013680) ##22	LHCGR (ENSSTUG00000013262) ##23	STON1 (ENSSTUG00000013233) ##25	ppp1r21 (ENSSTUG00000012084) ##26	FOXN2 (ENSSTUG00000012050)	ENSSTUG00000010533 ##28	msh6 (ENSSTUG00000010207)	ENSSTUG00000010183	KCNK12 (ENSSTUG00000010180) ##29	GOLGA4 (ENSSTUG00000009954) ##31	itga9 (ENSSTUG00000009715) ##32	ZC3H6 (ENSSTUG00000009680)	ENSSTUG00000009669 ##34	ENSSTUG00000009642 ##36	ENSSTUG00000009631	MERTK (ENSSTUG00000009479)
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000122151	ENSSSAG00000101173	ENSSSAG00000075553	ENSSSAG00000083955	ENSSSAG00000088446	ENSSSAG00000099101 ##35	ENSSSAG00000110104	kcnk1b (ENSSSAG00000075442) ##8	ENSSSAG00000075436 ##9	ENSSSAG00000072418 ##10	agpat4 (ENSSSAG00000072273) ##11	thbs2 (ENSSSAG00000071980) ##12	ENSSSAG00000071904	PSME4 (ENSSSAG00000071799) ##20	ERLEC1 (ENSSSAG00000071732) ##21	NRXN1 (ENSSSAG00000057796) ##22	LHCGR (ENSSSAG00000057492) ##23	ENSSSAG00000057485 ##25	ppp1r21 (ENSSSAG00000054096) ##26	ENSSSAG00000100373	ENSSSAG00000049879	ENSSSAG00000045454 ##28	ENSSSAG00000042313	ENSSSAG00000042206 ##29	ENSSSAG00000041544 ##31	itga9 (ENSSSAG00000040941) ##32	ENSSSAG00000091255	ZC3H6 (ENSSSAG00000040894)	ENSSSAG00000100465 ##34	ENSSSAG00000002948 ##36	MERTK (ENSSSAG00000040437)
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000157049.c.b.b	ENSGT00530000064017.a.f	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00390000010434.b.d.b	ENSGT00510000049375.g	ENSGT01060000253683	ENSGT00940000165757.c.a.b	ENSGT00940000155293.a.a.i ##8	ENSGT00940000165701.g ##10	ENSGT00950000182836.b.b.b.b.l ##11	ENSGT00940000157846.c.c ##12	ENSGT00390000012017	ENSGT00390000011433.s.a.f ##20	ENSGT00530000063603.B.h ##21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.h.a.a ##22	ENSGT00940000157364.B.d ##23	ENSGT00940000158817.e ##25	ENSGT00390000006820.c ##26	ENSGT00940000159118.g	ENSGT00530000063425.a.a.a.b.i.a.a ##28	ENSGT00550000075024	ENSGT00940000161424.k.a ##29	ENSGT00730000111139.m ##31	ENSGT00940000156503.u ##32	ENSGT00940000157396.jc	ENSGT00830000128368.b.e ##34	ENSGT00940000156844.b.g.a ##36	ENSGT00940000155669.mc.a	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b.c ##37
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000043076	ENSOMYG00000043052	ENSOMYG00000043047	ENSOMYG00000071543	ENSOMYG00000048427	kcnk1b (ENSOMYG00000043033) ##8	ENSOMYG00000038592 ##10	agpat4 (ENSOMYG00000037674) ##11	ENSOMYG00000037486 ##12	ENSOMYG00000037387	ENSOMYG00000036954 ##20	ERLEC1 (ENSOMYG00000036803) ##21	ENSOMYG00000049636	ENSOMYG00000058306	ENSOMYG00000052965	ENSOMYG00000035998 ##22	LHCGR (ENSOMYG00000035803) ##23	ENSOMYG00000035787 ##25	PPP1R21 (ENSOMYG00000033214) ##26	ENSOMYG00000032741	ENSOMYG00000030467 ##28	ENSOMYG00000029486	ENSOMYG00000029262 ##29	ENSOMYG00000029080 ##31	itga9 (ENSOMYG00000028775) ##32	ZC3H6 (ENSOMYG00000028668)	ENSOMYG00000069923	ENSOMYG00000028653 ##34	ENSOMYG00000028641 ##36	MERTK (ENSOMYG00000028465)	lhcgr (ENSOMYG00000028304) ##23
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000157049.c.b.b	ENSGT00530000064017.a.f	ENSGT00950000182926.b.d.a.a.b.h	ENSGT00390000010434.b.d.b	ENSGT00510000049375.g	ENSGT01060000253683	ENSGT00940000165757.c.a.b	ENSGT00940000155293.a.a.i ##8	ENSGT00940000165701.g ##10	ENSGT00950000182836.b.b.b.b.l ##11	ENSGT00940000157846.c.c ##12	ENSGT00390000012017	ENSGT00390000011433.s.a.f ##20	ENSGT00530000063603.B.h ##21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.h.a.a ##22	ENSGT00940000157364.B.d ##23	ENSGT00940000158817.e ##25	ENSGT00390000006820.c ##26	ENSGT00940000159118.g	ENSGT00530000063425.a.a.a.b.i.a.a ##28	ENSGT00550000075024	ENSGT00940000161424.k.a ##29	ENSGT00730000111139.m ##31	ENSGT00940000156503.u ##32	ENSGT00940000157396.jc	ENSGT00830000128368.b.e ##34	ENSGT00940000156844.b.g.a ##36	ENSGT00940000155669.mc.a	ENSGT00940000157364.A ##23	ENSGT00940000153956.a.b.c ##37
Chinook salmon	MODERN SPECIES	17	HPSE2 (ENSOTSG00005034422)	CNNM1 (ENSOTSG00005034416)	got1 (ENSOTSG00005034411)	nkx2.3 (ENSOTSG00005034407)	nkx3.3 (ENSOTSG00005034405)	kcnk1b (ENSOTSG00005034403) ##8	ENSOTSG00005029107 ##10	agpat4 (ENSOTSG00005029064) ##11	THBS2 (ENSOTSG00005027465) ##12	ENSOTSG00005027451	ENSOTSG00005027450	PSME4 (ENSOTSG00005026777) ##20	erlec1 (ENSOTSG00005025375) ##21	ENSOTSG00005025372	ENSOTSG00005025370	NRXN1 (ENSOTSG00005023915) ##22	LHCGR (ENSOTSG00005023894) ##23	STON1 (ENSOTSG00005023892) ##25	ppp1r21 (ENSOTSG00005021526) ##26	FOXN2 (ENSOTSG00005021516)	ENSOTSG00005021282 ##28	msh6 (ENSOTSG00005017579)	KCNK12 (ENSOTSG00005017576) ##29	GOLGA4 (ENSOTSG00005017572) ##31	itga9 (ENSOTSG00005017301) ##32	ZC3H6 (ENSOTSG00005017280)	ENSOTSG00005017277 ##34	ENSOTSG00005017273 ##36	MERTK (ENSOTSG00005017271)	lhcgr (ENSOTSG00005017209) ##23	ANKRD1 (ENSOTSG00005017205) ##37
Coho salmon	MODERN SPECIES	17	ENSOKIG00005018168	ENSOKIG00005018154	ENSOKIG00005018101	MARVELD1 (ENSOKIG00005018097)	ENSOKIG00005018091	ENSOKIG00005018083	kcnk1b (ENSOKIG00005018080) ##8	ENSOKIG00005018075	ENSOKIG00005012935 ##10	agpat4 (ENSOKIG00005012600) ##11	THBS2 (ENSOKIG00005012323) ##12	ENSOKIG00005012263	ENSOKIG00005012249	PSME4 (ENSOKIG00005012067) ##20	ERLEC1 (ENSOKIG00005011136) ##21	NRXN1 (ENSOKIG00005009580) ##22	LHCGR (ENSOKIG00005009460) ##23	STON1 (ENSOKIG00005009449) ##25	ppp1r21 (ENSOKIG00005006947) ##26	FOXN2 (ENSOKIG00005006794)	ENSOKIG00005006542 ##28	msh6 (ENSOKIG00005006274)	KCNK12 (ENSOKIG00005020653) ##29	GOLGA4 (ENSOKIG00005020615) ##31	itga9 (ENSOKIG00005020483) ##32	ZC3H6 (ENSOKIG00005020439)	ENSOKIG00005020425 ##34	ENSOKIG00005020407 ##36	MERTK (ENSOKIG00005020237)	lhcgr (ENSOKIG00005020060) ##23	ANKRD1 (ENSOKIG00005020019) ##37
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.h.b.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.h.b.a ##22
Oncorhynchus	ANCESTRAL SPECIES	17								ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.b.a ##22	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.a.a ##32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.h ##36	ENSGT00940000155669.mc.b	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000017912 #10	agpat4 (ENSOMYG00000024323) #11	ENSOMYG00000052981	ENSOMYG00000024407	ENSOMYG00000024583 #12	ENSOMYG00000072637 ##13	ENSOMYG00000075183	ENSOMYG00000051807	ENSOMYG00000053929	ENSOMYG00000057002	PSME4 (ENSOMYG00000025175) #20	ENSOMYG00000077387	ENSOMYG00000026216	erlec1 (ENSOMYG00000026232) #21	ENSOMYG00000055620	ENSOMYG00000027535 ##22	ENSOMYG00000054114	NRXN1 (ENSOMYG00000026446) #22	LHCGR (ENSOMYG00000050586) #23	gtf2a1l (ENSOMYG00000037167) #24	STON1 (ENSOMYG00000037153) #25	ppp1r21 (ENSOMYG00000037105) #26	ENSOMYG00000048718	ENSOMYG00000037077	ENSOMYG00000034921 #28	ENSOMYG00000057037	ENSOMYG00000034742 #29	ENSOMYG00000034694 #31	itga9 (ENSOMYG00000034658) ##32	ENSOMYG00000034581 #34	ENSOMYG00000034628 #36
Oncorhynchus_a	ANCESTRAL SPECIES	13								ENSGT00940000155293.a.a.j #8	ENSGT00940000165701.h #10	ENSGT00990000204854.c #9	ENSGT00950000182836.b.b.b.b.k #11	ENSGT00940000157846.c.d #12	ENSGT00390000011433.s.a.e #20	ENSGT00390000007723	ENSGT00530000063603.B.g #21	ENSGT00940000154292.a.b.d.h.b.a ##22	ENSGT00940000154292.a.b.d.h.a.b #22	ENSGT00940000157364.B.c #23	ENSGT00940000163055 #24	ENSGT00940000158817.f #25	ENSGT00390000006820.d #26	ENSGT00940000159118.h	ENSGT00530000063425.a.a.a.b.i.a.b #28	ENSGT00940000161424.k.b #29	ENSGT00730000111139.n #31	ENSGT00940000156503.v.a.a ##32	ENSGT00830000128368.b.f #34	ENSGT00940000156844.b.g.b.b ##36	ENSGT00940000155669.mc.b	ENSGT00940000153956.a.b.d #37	ENSGT00940000155896.k.b
Chinook salmon	MODERN SPECIES		ENSOTSG00005026863	ENSOTSG00005026866	epas1b (ENSOTSG00005026875)	ENSOTSG00005029069	ENSOTSG00005029070	ENSOTSG00005029072	pcgf5a (ENSOTSG00005029077)	ENSOTSG00005029087 #37	ENSOTSG00005029089	ENSOTSG00005029093 ##36	ENSOTSG00005029102 #34	GOLGA4 (ENSOTSG00005029110) #31	PSME4 (ENSOTSG00005029152) #20	GPR75 (ENSOTSG00005035805)	erlec1 (ENSOTSG00005035877) #21	ENSOTSG00005036153 ##22	NRXN1 (ENSOTSG00005036190) #22	LHCGR (ENSOTSG00005036192) #23	gtf2a1l (ENSOTSG00005036193) #24	ENSOTSG00005036194 #25	ppp1r21 (ENSOTSG00005036205) #26	ENSOTSG00005039080	ENSOTSG00005039081	ENSOTSG00005039082	ENSOTSG00005039089 #28	KCNK12 (ENSOTSG00005039783) #29
Huchen	MODERN SPECIES	6159																ENSHHUG00000017629 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.h.b.b ##22
Huchen	MODERN SPECIES	779						ENSHHUG00000029858	ENSHHUG00000029853	ENSHHUG00000029844	med13a (ENSHHUG00000029764)	rnft1 (ENSHHUG00000029756)	ENSHHUG00000029713	VMP1 (ENSHHUG00000029688)	ptrh2 (ENSHHUG00000029646)	cltca (ENSHHUG00000029538)	ENSHHUG00000029533	ENSHHUG00000029525 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.g ##22
Huchen	MODERN SPECIES	5458																ENSHHUG00000005885 ##22	ENSHHUG00000005889
Northern pike	MODERN SPECIES	4	fam135a (ENSELUG00000012515)	zgc:172136 (ENSELUG00000001042)	TARBP1 (ENSELUG00000012193)	ENSELUG00000012130	ENSELUG00000012116	SLC35F3 (ENSELUG00000012062) #7	kcnk1b (ENSELUG00000000431) #8	ENSELUG00000011854 #10	ENSELUG00000011781	agpat4 (ENSELUG00000011759) #11	THBS2 (ENSELUG00000000425) #12	ENSELUG00000001497	PSME4 (ENSELUG00000011276) #20	GPR75 (ENSELUG00000011209)	erlec1 (ENSELUG00000011166) #21	nrxn1b (ENSELUG00000011068) #22	LHCGR (ENSELUG00000010744) #23	gtf2a1l (ENSELUG00000034256) #24	STON1 (ENSELUG00000010706) #25	ppp1r21 (ENSELUG00000010645) #26	FOXN2 (ENSELUG00000010538)	ENSELUG00000010499 #28	msh6 (ENSELUG00000010431)	ENSELUG00000010344	mfsd13a (ENSELUG00000010231)	SEMA4G (ENSELUG00000010193)	RM43 (ENSELUG00000026129)	twnk (ENSELUG00000010089)	LZTS2 (ENSELUG00000010065)	PDZD7 (ENSELUG00000010038)	ENSELUG00000010023
Acanthomorphata	ANCESTRAL SPECIES	16	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00390000018525.a.a
Cod	MODERN SPECIES	6	zgc:172136 (ENSGMOG00000004632)	TARBP1 (ENSGMOG00000004549)	ENSGMOG00000004533 #7	kcnk1b (ENSGMOG00000034962) #8	ENSGMOG00000004476 #10	ENSGMOG00000036811	agpat4 (ENSGMOG00000004460) #11	ENSGMOG00000004422 #12	ENSGMOG00000002380	ENSGMOG00000034186	ENSGMOG00000002432	ENSGMOG00000030751	PSME4 (ENSGMOG00000016263) #20	ENSGMOG00000037227	erlec1 (ENSGMOG00000016227) #21	NRXN1 (ENSGMOG00000016160) #22	LHCGR (ENSGMOG00000016127) #23	gtf2a1l (ENSGMOG00000029158) #24	STON1 (ENSGMOG00000016089) #25	ppp1r21 (ENSGMOG00000016042) #26	FOXN2 (ENSGMOG00000024029)	ENSGMOG00000015987 #28	msh6 (ENSGMOG00000015945)	KCNK12 (ENSGMOG00000034834) #29	ENSGMOG00000005864	ENSGMOG00000024309 #31	itga9 (ENSGMOG00000015835) #32	ENSGMOG00000036075	ZC3H6 (ENSGMOG00000034184)	ENSGMOG00000015724 #34	ENSGMOG00000015677 #36
Euacanthomorphacea	ANCESTRAL SPECIES	6	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Pinecone sodierfish	MODERN SPECIES	6	fam135a (ENSMMDG00005013183)	zgc:172136 (ENSMMDG00005013293)	TARBP1 (ENSMMDG00005013311)	ENSMMDG00005013332	SLC35F3 (ENSMMDG00005013335) #7	kcnk1b (ENSMMDG00005013338) #8	ENSMMDG00005013425 #10	ENSMMDG00005019250	agpat4 (ENSMMDG00005019251) #11	THBS2 (ENSMMDG00005019253) #12	ENSMMDG00005019254 #12	ENSMMDG00005019255	PSME4 (ENSMMDG00005019266) #20	GPR75 (ENSMMDG00005019444)	erlec1 (ENSMMDG00005019450) #21	nrxn1b (ENSMMDG00005019785) #22	LHCGR (ENSMMDG00005020392) #23	gtf2a1l (ENSMMDG00005020427) #24	STON1 (ENSMMDG00005020429) #25	ppp1r21 (ENSMMDG00005001381) #26	FOXN2 (ENSMMDG00005004764)	ENSMMDG00005004823 ##28	msh6 (ENSMMDG00005006447)	KCNK12 (ENSMMDG00005006452) #29	GOLGA4 (ENSMMDG00005006457) #31	itga9 (ENSMMDG00005006481) #32	ZC3H6 (ENSMMDG00005006600)	ENSMMDG00005006606 #34	ENSMMDG00005006636 #36	MERTK (ENSMMDG00005006648)	lhcgr (ENSMMDG00005006784) ##23
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Tiger tail seahorse	MODERN SPECIES	177	fam135a (ENSHCOG00000013500)	zgc:172136 (ENSHCOG00000013456)	ENSHCOG00000013439	ENSHCOG00000013432	SLC35F3 (ENSHCOG00000000387) #7	kcnk1b (ENSHCOG00000013403) #8	ENSHCOG00000013380 #10	ENSHCOG00000013325	agpat4 (ENSHCOG00000013308) #11	THBS2 (ENSHCOG00000013278) #12	ENSHCOG00000013170	ENSHCOG00000013150	PSME4 (ENSHCOG00000013111) #20	GPR75 (ENSHCOG00000013014)	erlec1 (ENSHCOG00000013002) #21	nrxn1b (ENSHCOG00000012949) #22	ENSHCOG00000012898	ENSHCOG00000012884	LHCGR (ENSHCOG00000012870) #23	gtf2a1l (ENSHCOG00000012837) #24	STON1 (ENSHCOG00000012828) #25	ppp1r21 (ENSHCOG00000012808) #26	FOXN2 (ENSHCOG00000012727)	ENSHCOG00000012708 ##28	msh6 (ENSHCOG00000012671)	KCNK12 (ENSHCOG00000012622) #29	GOLGA4 (ENSHCOG00000012610) #31	itga9 (ENSHCOG00000012593) #32	ENSHCOG00000012538	ZC3H6 (ENSHCOG00000012519)	ENSHCOG00000012509 #34
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Cyprinodontiformes	ANCESTRAL SPECIES	17	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Aplocheiloidei	ANCESTRAL SPECIES	28	ENSGT00940000179915	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23
Mangrove rivulus	MODERN SPECIES	23	ENSKMAG00000017701	col9a1b (ENSKMAG00000017666)	fam135a (ENSKMAG00000017630)	zgc:172136 (ENSKMAG00000017593)	TARBP1 (ENSKMAG00000017546)	ENSKMAG00000017523	SLC35F3 (ENSKMAG00000017484) #7	kcnk1b (ENSKMAG00000017469) #8	ENSKMAG00000017351 #10	agpat4 (ENSKMAG00000017310) #11	THBS2 (ENSKMAG00000017188) #12	ENSKMAG00000017139	PSME4 (ENSKMAG00000017056) #20	GPR75 (ENSKMAG00000017037)	erlec1 (ENSKMAG00000016984) #21	nrxn1b (ENSKMAG00000016776) #22	LHCGR (ENSKMAG00000016701) #23	gtf2a1l (ENSKMAG00000016635) #24	STON1 (ENSKMAG00000016625) #25	ppp1r21 (ENSKMAG00000016541) #26	FOXN2 (ENSKMAG00000016522)	ENSKMAG00000016462 ##28	msh6 (ENSKMAG00000016437)	KCNK12 (ENSKMAG00000016419) #29	GOLGA4 (ENSKMAG00000016380) #31	itga9 (ENSKMAG00000016301) #32	ZC3H6 (ENSKMAG00000016252)	ENSKMAG00000016219 #34	ENSKMAG00000016189 #36	MERTK (ENSKMAG00000016162)	lhcgr (ENSKMAG00000016107) ##23
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015003588	ENSNFUG00015003593	ENSNFUG00015003595	ADGRB3 (ENSNFUG00015003648)	ENSNFUG00015003861	lmbrd1 (ENSNFUG00015003885)	ENSNFUG00015003960	ENSNFUG00015003964	ENSNFUG00015003972	ENSNFUG00015003975	THBS2 (ENSNFUG00015004001) #12	ENSNFUG00015004111	PSME4 (ENSNFUG00015004149) #20	GPR75 (ENSNFUG00015004255)	ERLEC1 (ENSNFUG00015004262) #21	nrxn1b (ENSNFUG00015004417) #22	ENSNFUG00015005117	ENSNFUG00015005123	ENSNFUG00015005126	LHCGR (ENSNFUG00015005163) #23	ENSNFUG00015005373	GTF2A1L (ENSNFUG00015005378) #25	ppp1r21 (ENSNFUG00015005400) #26	FOXN2 (ENSNFUG00015005477)	FBXO11A (ENSNFUG00015005577) ##28	MSH6 (ENSNFUG00015006310)	GOLGA4 (ENSNFUG00015006331) #31	itga9 (ENSNFUG00015006486) #32	ZC3H6 (ENSNFUG00015006907)	ENSNFUG00015006917 #34	MERTK (ENSNFUG00015006956)
Cyprinodontoidei	ANCESTRAL SPECIES	14	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
NAME_4	ANCESTRAL SPECIES	2	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396.f.a	ENSGT00940000157396.f.b	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Mummichog	MODERN SPECIES	1589	ENSFHEG00000007630	fam135a (ENSFHEG00000000196)	zgc:172136 (ENSFHEG00000007604)	TARBP1 (ENSFHEG00000007565)	ENSFHEG00000007299	SLC35F3 (ENSFHEG00000007283) #7	kcnk1b (ENSFHEG00000007246) #8	ENSFHEG00000007230 #10	ENSFHEG00000007039	agpat4 (ENSFHEG00000007012) #11	THBS2 (ENSFHEG00000006973) #12	ENSFHEG00000006799	PSME4 (ENSFHEG00000006708) #20	GPR75 (ENSFHEG00000006576)	erlec1 (ENSFHEG00000006565) #21	nrxn1b (ENSFHEG00000006531) #22	LHCGR (ENSFHEG00000006478) #23	gtf2a1l (ENSFHEG00000006445) #24	STON1 (ENSFHEG00000006436) #25	ppp1r21 (ENSFHEG00000006415) #26	FOXN2 (ENSFHEG00000006340)	ENSFHEG00000006317 ##28	ENSFHEG00000006271	msh6 (ENSFHEG00000006256)	KCNK12 (ENSFHEG00000006249) #29	GOLGA4 (ENSFHEG00000006230) #31	itga9 (ENSFHEG00000006188) #32	ENSFHEG00000006094	ENSFHEG00000006066	ENSFHEG00000006041	ENSFHEG00000006002 #34
Sheepshead minnow	MODERN SPECIES	358									agpat4 (ENSCVAG00000008480) #11	THBS2 (ENSCVAG00000008439) #12	ENSCVAG00000008292	ENSCVAG00000008274	PSME4 (ENSCVAG00000008232) #20	GPR75 (ENSCVAG00000008119)	erlec1 (ENSCVAG00000008105) #21	nrxn1b (ENSCVAG00000007981) #22	ENSCVAG00000007886	LHCGR (ENSCVAG00000007870) #23	gtf2a1l (ENSCVAG00000007845) #24	STON1 (ENSCVAG00000007755) #25	ppp1r21 (ENSCVAG00000007743) #26	FOXN2 (ENSCVAG00000007647)	ENSCVAG00000007631 ##28	msh6 (ENSCVAG00000007560)	KCNK12 (ENSCVAG00000007527) #29
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000157935.b	ENSGT00940000157565.p	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000157935.b	ENSGT00940000157565.p	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	727																ENSGT00940000154292.a.b.d.a #22	ENSGT00940000177029.b
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	415																ENSPLAG00000001024 #22	nrxn1b (ENSPLAG00000001023) #22	ENSPLAG00000001020
Sailfin molly	MODERN SPECIES	415															ENSPLAG00000001024 #22	nrxn1b (ENSPLAG00000001023) #22	ENSPLAG00000001020
NAME_6	ANCESTRAL SPECIES	73		ENSGT00940000157565.p	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d.b #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Amazon molly	MODERN SPECIES	267	ENSPFOG00000023358	ENSPFOG00000012555	ENSPFOG00000012726	fam135a (ENSPFOG00000012899)	zgc:172136 (ENSPFOG00000012967)	TARBP1 (ENSPFOG00000013020)	ENSPFOG00000013269	SLC35F3 (ENSPFOG00000013278) #7	kcnk1b (ENSPFOG00000013354) #8	ENSPFOG00000013390 #10	agpat4 (ENSPFOG00000013562) #11	THBS2 (ENSPFOG00000013623) #12	PSME4 (ENSPFOG00000014029) #20	GPR75 (ENSPFOG00000019996)	erlec1 (ENSPFOG00000014456) #21	nrxn1b (ENSPFOG00000014655) #22	LHCGR (ENSPFOG00000015093) #23	gtf2a1l (ENSPFOG00000015159) #24	STON1 (ENSPFOG00000015176) #25	STON1 (ENSPFOG00000024314) #25	ppp1r21 (ENSPFOG00000015194) #26	FOXN2 (ENSPFOG00000015286)	ENSPFOG00000015304 ##28	msh6 (ENSPFOG00000015401)	KCNK12 (ENSPFOG00000015461) #29	GOLGA4 (ENSPFOG00000015528) #31	itga9 (ENSPFOG00000024558) #32	ENSPFOG00000015736	ZC3H6 (ENSPFOG00000015748)	ENSPFOG00000015780 #34	ENSPFOG00000015814 #36
Sailfin molly	MODERN SPECIES	2214																ENSPLAG00000005386 #22
Guppy	MODERN SPECIES	445	col9a1b (ENSPREG00000022698)	fam135a (ENSPREG00000022736)	zgc:172136 (ENSPREG00000022743)	TARBP1 (ENSPREG00000022753)	ENSPREG00000022764	SLC35F3 (ENSPREG00000022773) #7	kcnk1b (ENSPREG00000022780) #8	ENSPREG00000022799 #10	ENSPREG00000022821	agpat4 (ENSPREG00000022826) #11	THBS2 (ENSPREG00000022838) #12	ENSPREG00000022863	PSME4 (ENSPREG00000022914) #20	GPR75 (ENSPREG00000022973)	erlec1 (ENSPREG00000022979) #21	nrxn1b (ENSPREG00000023025) #22	ENSPREG00000023061	LHCGR (ENSPREG00000023068) #23	gtf2a1l (ENSPREG00000023073) #24	STON1 (ENSPREG00000023075) #25	ppp1r21 (ENSPREG00000023082) #26	FOXN2 (ENSPREG00000023092)	ENSPREG00000023095 ##28	msh6 (ENSPREG00000023099)	KCNK12 (ENSPREG00000023105) #29	GOLGA4 (ENSPREG00000023109) #31	itga9 (ENSPREG00000023116) #32	ENSPREG00000023122	ZC3H6 (ENSPREG00000023126)	ENSPREG00000023128 #34	ENSPREG00000023132 #36
Platyfish	MODERN SPECIES	14	ENSXMAG00000009528	fam135a (ENSXMAG00000009591)	zgc:172136 (ENSXMAG00000009593)	TARBP1 (ENSXMAG00000009600)	ENSXMAG00000026609	SLC35F3 (ENSXMAG00000009605) #7	kcnk1b (ENSXMAG00000009607) #8	ENSXMAG00000009609 #10	agpat4 (ENSXMAG00000009628) #11	THBS2 (ENSXMAG00000003209) #12	ENSXMAG00000024878	ENSXMAG00000010767	PSME4 (ENSXMAG00000010781) #20	GPR75 (ENSXMAG00000019900)	erlec1 (ENSXMAG00000010822) #21	nrxn1b (ENSXMAG00000010885) #22	LHCGR (ENSXMAG00000010925) #23	gtf2a1l (ENSXMAG00000021012) #24	STON1 (ENSXMAG00000010933) #25	ppp1r21 (ENSXMAG00000010942) #26	FOXN2 (ENSXMAG00000022841)	ENSXMAG00000010970 ##28	msh6 (ENSXMAG00000010986)	KCNK12 (ENSXMAG00000010991) #29	GOLGA4 (ENSXMAG00000026123) #31	itga9 (ENSXMAG00000011004) #32	ENSXMAG00000029116	ZC3H6 (ENSXMAG00000020822)	ENSXMAG00000011046 #34	ENSXMAG00000011053 #36	MERTK (ENSXMAG00000011065)
Oryzias	ANCESTRAL SPECIES	6	ENSGT00940000158276	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Javanese ricefish	MODERN SPECIES	6	SLC35F3 (ENSOJAG00000015760) #7	kcnk1b (ENSOJAG00000015785) #8	ENSOJAG00000015893 #10	ENSOJAG00000017782	agpat4 (ENSOJAG00000017813) #11	THBS2 (ENSOJAG00000017860) #12	ENSOJAG00000018254	PSME4 (ENSOJAG00000018407) #20	GPR75 (ENSOJAG00000019784)	erlec1 (ENSOJAG00000019809) #21	ENSOJAG00000020097	kyat3.2 (ENSOJAG00000020123)	ENSOJAG00000020365	psmb11b (ENSOJAG00000020432)	slc34a2b (ENSOJAG00000020525)	nrxn1b (ENSOJAG00000021126) #22	LHCGR (ENSOJAG00000006489) #23	gtf2a1l (ENSOJAG00000006631) #24	STON1 (ENSOJAG00000006647) #25	ppp1r21 (ENSOJAG00000006701) #26	FOXN2 (ENSOJAG00000007278)	ENSOJAG00000007336 ##28	msh6 (ENSOJAG00000007853)	KCNK12 (ENSOJAG00000007871) #29	itga9 (ENSOJAG00000007963) #32	ZC3H6 (ENSOJAG00000008720)	ENSOJAG00000008730 #34	ENSOJAG00000008751 #36	MERTK (ENSOJAG00000008806)	sft2d1 (ENSOJAG00000009225)	ENSOJAG00000009238
Indian medaka	MODERN SPECIES	27	ENSOMEG00000001566	col9a1b (ENSOMEG00000001556)	fam135a (ENSOMEG00000001537)	zgc:172136 (ENSOMEG00000001523)	ENSOMEG00000001519	ENSOMEG00000001515	SLC35F3 (ENSOMEG00000001511) #7	kcnk1b (ENSOMEG00000001508) #8	ENSOMEG00000001494 #10	agpat4 (ENSOMEG00000001462) #11	THBS2 (ENSOMEG00000001451) #12	ENSOMEG00000001433	PSME4 (ENSOMEG00000001423) #20	GPR75 (ENSOMEG00000001409)	erlec1 (ENSOMEG00000001405) #21	nrxn1b (ENSOMEG00000001387) #22	LHCGR (ENSOMEG00000001366) #23	gtf2a1l (ENSOMEG00000001365) #24	STON1 (ENSOMEG00000001360) #25	ppp1r21 (ENSOMEG00000001353) #26	FOXN2 (ENSOMEG00000001346)	ENSOMEG00000001341 ##28	msh6 (ENSOMEG00000001336)	KCNK12 (ENSOMEG00000001334) #29	GOLGA4 (ENSOMEG00000001329) #31	itga9 (ENSOMEG00000001313) #32	ENSOMEG00000001303	ENSOMEG00000001299	ZC3H6 (ENSOMEG00000001296)	ENSOMEG00000001292 #34	ENSOMEG00000001288 #36
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00940000163514.C	ENSGT00940000158276	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000153348.C	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Japanese Medaka HdrR	MODERN SPECIES	6	fam135a (ENSORLG00000010498)	zgc:172136 (ENSORLG00000010510)	TARBP1 (ENSORLG00000010529)	SLC35F3 (ENSORLG00000010544) #7	ENSORLG00000010532	kcnk1b (ENSORLG00000010564) #8	ENSORLG00000010603 #10	ENSORLG00000027478	agpat4 (ENSORLG00000010639) #11	PSME4 (ENSORLG00000010828) #20	THBS2 (ENSORLG00000010727) #12	ENSORLG00000010747	GPR75 (ENSORLG00000010839)	erlec1 (ENSORLG00000010856) #21	ENSORLG00000023446	NRXN1 (ENSORLG00000010873) #22	ENSORLG00000027978	lhcgr (ENSORLG00000010892) #23	gtf2a1l (ENSORLG00000027977) #24	STON1 (ENSORLG00000010924) #25	ppp1r21 (ENSORLG00000010991) #26	FOXN2 (ENSORLG00000011005)	ENSORLG00000011053 ##28	msh6 (ENSORLG00000011074)	KCNK12 (ENSORLG00000011086) #29	ENSORLG00000022394 #31	ENSORLG00000029511 #31	ENSORLG00000027825 #31	itga9 (ENSORLG00000011143) #32	exosc5 (ENSORLG00000023035)	ENSORLG00000024659
Chinese medaka	MODERN SPECIES	247	ENSOSIG00000004114	fam135a (ENSOSIG00000004160)	zgc:172136 (ENSOSIG00000004400)	TARBP1 (ENSOSIG00000004409)	ENSOSIG00000004416	SLC35F3 (ENSOSIG00000004421) #7	kcnk1b (ENSOSIG00000004428) #8	ENSOSIG00000004494 #10	ENSOSIG00000007605	agpat4 (ENSOSIG00000007606) #11	THBS2 (ENSOSIG00000007658) #12	ENSOSIG00000011911	PSME4 (ENSOSIG00000011939) #20	GPR75 (ENSOSIG00000012058)	erlec1 (ENSOSIG00000012060) #21	nrxn1b (ENSOSIG00000012149) #22	ENSOSIG00000016362	LHCGR (ENSOSIG00000016365) #23	gtf2a1l (ENSOSIG00000016367) #24	ENSOSIG00000016370	STON1 (ENSOSIG00000016372) #25	ppp1r21 (ENSOSIG00000016378) #26	FOXN2 (ENSOSIG00000016613)	ENSOSIG00000016621 ##28	msh6 (ENSOSIG00000016948)	KCNK12 (ENSOSIG00000016949) #29	GOLGA4 (ENSOSIG00000016956) #31	itga9 (ENSOSIG00000016972) #32	exosc5 (ENSOSIG00000017145)	ENSOSIG00000017147	ZC3H6 (ENSOSIG00000017150)
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000012017.o	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Zebra mbuna	MODERN SPECIES	1095	COL9A1 (ENSMZEG00005005703)	fam135a (ENSMZEG00005005715)	zgc:172136 (ENSMZEG00005005734)	TARBP1 (ENSMZEG00005005751)	ENSMZEG00005005773	SLC35F3 (ENSMZEG00005005782) #7	kcnk1b (ENSMZEG00005005796) #8	ENSMZEG00005005814 #10	agpat4 (ENSMZEG00005005870) #11	THBS2 (ENSMZEG00005005891) #12	ENSMZEG00005005961	ENSMZEG00005005982	PSME4 (ENSMZEG00005006033) #20	erlec1 (ENSMZEG00005006219) #21	GPR75 (ENSMZEG00005006252)	nrxn1b (ENSMZEG00005006282) #22	ENSMZEG00005006330	LHCGR (ENSMZEG00005006356) #23	gtf2a1l (ENSMZEG00005006394) #24	STON1 (ENSMZEG00005006402) #25	ppp1r21 (ENSMZEG00005006418) #26	FOXN2 (ENSMZEG00005006507)	ENSMZEG00005006518 ##28	msh6 (ENSMZEG00005006617)	KCNK12 (ENSMZEG00005006650) #29	GOLGA4 (ENSMZEG00005006667) #31	itga9 (ENSMZEG00005006723) #32	ENSMZEG00005006766	ZC3H6 (ENSMZEG00005006828)	ENSMZEG00005006855 #34	ENSMZEG00005006888 #36
Eastern happy	MODERN SPECIES	4	ENSACLG00000002063	fam135a (ENSACLG00000002041)	zgc:172136 (ENSACLG00000002029)	ENSACLG00000002018	ENSACLG00000002014	SLC35F3 (ENSACLG00000001977) #7	kcnk1b (ENSACLG00000001964) #8	ENSACLG00000001769 #10	agpat4 (ENSACLG00000001626) #11	THBS2 (ENSACLG00000001480) #12	ENSACLG00000001451	PSME4 (ENSACLG00000001144) #20	GPR75 (ENSACLG00000001123)	erlec1 (ENSACLG00000001050) #21	ENSACLG00000001006	nrxn1b (ENSACLG00000000616) #22	LHCGR (ENSACLG00000000561) #23	gtf2a1l (ENSACLG00000000542) #24	STON1 (ENSACLG00000000523) #25	ppp1r21 (ENSACLG00000000394) #26	FOXN2 (ENSACLG00000000351)	ENSACLG00000000294 ##28	msh6 (ENSACLG00000000235)	KCNK12 (ENSACLG00000000222) #29	GOLGA4 (ENSACLG00000000164) #31	itga9 (ENSACLG00000026385) #32	ENSACLG00000026364	ZC3H6 (ENSACLG00000026343)	ENSACLG00000026326 #34	ENSACLG00000026318 #36	MERTK (ENSACLG00000026301)
P. nyererei	MODERN SPECIES	368	fam135a (ENSPNYG00000019229)	zgc:172136 (ENSPNYG00000019202)	TARBP1 (ENSPNYG00000019135)	ENSPNYG00000019119	SLC35F3 (ENSPNYG00000019101) #7	kcnk1b (ENSPNYG00000019085) #8	ENSPNYG00000019026 #10	agpat4 (ENSPNYG00000018995) #11	THBS2 (ENSPNYG00000018915) #12	ENSPNYG00000018875	ENSPNYG00000018847	PSME4 (ENSPNYG00000018711) #20	GPR75 (ENSPNYG00000018685)	erlec1 (ENSPNYG00000018639) #21	ENSPNYG00000018620	nrxn1b (ENSPNYG00000018576) #22	LHCGR (ENSPNYG00000018542) #23	gtf2a1l (ENSPNYG00000018511) #24	STON1 (ENSPNYG00000018501) #25	ppp1r21 (ENSPNYG00000018432) #26	FOXN2 (ENSPNYG00000018415)	ENSPNYG00000018356 ##28	msh6 (ENSPNYG00000018307)	KCNK12 (ENSPNYG00000018298) #29	GOLGA4 (ENSPNYG00000018282) #31	itga9 (ENSPNYG00000018199) #32	ENSPNYG00000018168	ZC3H6 (ENSPNYG00000018130)	ENSPNYG00000018097 #34	ENSPNYG00000018074 #36	MERTK (ENSPNYG00000018027)
Burton s mouthbrooder	MODERN SPECIES	279	zgc:172136 (ENSHBUG00000008861)	TARBP1 (ENSHBUG00000008877)	ENSHBUG00000008890	SLC35F3 (ENSHBUG00000008916) #7	kcnk1b (ENSHBUG00000008933) #8	ENSHBUG00000008953	ENSHBUG00000009033 #10	agpat4 (ENSHBUG00000009061) #11	THBS2 (ENSHBUG00000009211) #12	ENSHBUG00000009241	ENSHBUG00000009271	PSME4 (ENSHBUG00000009387) #20	GPR75 (ENSHBUG00000009399)	erlec1 (ENSHBUG00000009455) #21	ENSHBUG00000009473	nrxn1b (ENSHBUG00000009549) #22	LHCGR (ENSHBUG00000009591) #23	ENSHBUG00000009599	STON1 (ENSHBUG00000009606) #25	ppp1r21 (ENSHBUG00000009707) #26	FOXN2 (ENSHBUG00000009734)	ENSHBUG00000009802 ##28	msh6 (ENSHBUG00000009824)	KCNK12 (ENSHBUG00000009843) #29	GOLGA4 (ENSHBUG00000009893) #31	itga9 (ENSHBUG00000000257) #32	ENSHBUG00000010078	ZC3H6 (ENSHBUG00000010088)	ENSHBUG00000010119 #34	ENSHBUG00000010187 #36	MERTK (ENSHBUG00000010232)
Lyretail cichlid	MODERN SPECIES	364	col9a1b (ENSNBRG00000014193)	fam135a (ENSNBRG00000014275)	zgc:172136 (ENSNBRG00000014336)	ENSNBRG00000014368	ENSNBRG00000014386	SLC35F3 (ENSNBRG00000014400) #7	kcnk1b (ENSNBRG00000014423) #8	ENSNBRG00000014466 #10	agpat4 (ENSNBRG00000014537) #11	THBS2 (ENSNBRG00000014573) #12	ENSNBRG00000014630	ENSNBRG00000014649	PSME4 (ENSNBRG00000014722) #20	GPR75 (ENSNBRG00000014887)	erlec1 (ENSNBRG00000014899) #21	nrxn1b (ENSNBRG00000014934) #22	ENSNBRG00000014987	LHCGR (ENSNBRG00000015006) #23	ENSNBRG00000015035	STON1 (ENSNBRG00000015045) #25	ppp1r21 (ENSNBRG00000015063) #26	FOXN2 (ENSNBRG00000015119)	ENSNBRG00000015138 ##28	msh6 (ENSNBRG00000015186)	KCNK12 (ENSNBRG00000015224) #29	GOLGA4 (ENSNBRG00000015260) #31	itga9 (ENSNBRG00000015292) #32	ENSNBRG00000015354	ZC3H6 (ENSNBRG00000015382)	ENSNBRG00000015417 #34	ENSNBRG00000015438 #36
Nile tilapia	MODERN SPECIES	4	fam135a (ENSONIG00000009784)	zgc:172136 (ENSONIG00000009786)	TARBP1 (ENSONIG00000009789)	ENSONIG00000009792	slc35f3 (ENSONIG00000038716) #7	kcnk1 (ENSONIG00000036138) #8	ENSONIG00000009797 #10	ENSONIG00000030253	agpat4 (ENSONIG00000009801) #11	THBS2 (ENSONIG00000009805) #12	ENSONIG00000009817	PSME4 (ENSONIG00000009819) #20	GPR75 (ENSONIG00000021264)	erlec1 (ENSONIG00000009830) #21	ENSONIG00000031859	nrxn1b (ENSONIG00000009835) #22	ENSONIG00000039612	gth-rii (ENSONIG00000032593) #23	gtf2a1l (ENSONIG00000033084) #24	STON1 (ENSONIG00000009850) #25	ppp1r21 (ENSONIG00000009853) #26	FOXN2 (ENSONIG00000009856)	ENSONIG00000009859 ##28	msh6 (ENSONIG00000009861)	KCNK12 (ENSONIG00000009864) #29	GOLGA4 (ENSONIG00000009865) #31	itga9 (ENSONIG00000009870) #32	ENSONIG00000035804	ZC3H6 (ENSONIG00000009880)	ENSONIG00000009881 #34	ENSONIG00000009882 #36
Midas cichlid	MODERN SPECIES	1196	fam135a (ENSACIG00000020867)	zgc:172136 (ENSACIG00000020906)	ENSACIG00000020931	ENSACIG00000020943	SLC35F3 (ENSACIG00000020948) #7	kcnk1b (ENSACIG00000020962) #8	ENSACIG00000020995 #10	ENSACIG00000021241	agpat4 (ENSACIG00000021263) #11	THBS2 (ENSACIG00000021287) #12	ENSACIG00000021320	ENSACIG00000021344	PSME4 (ENSACIG00000021367) #20	GPR75 (ENSACIG00000021457)	erlec1 (ENSACIG00000021463) #21	nrxn1b (ENSACIG00000021500) #22	ENSACIG00000021537	LHCGR (ENSACIG00000021547) #23	ENSACIG00000021570	STON1 (ENSACIG00000021578) #25	ppp1r21 (ENSACIG00000021597) #26	FOXN2 (ENSACIG00000021633)	ENSACIG00000021646 ##28	msh6 (ENSACIG00000021689)	KCNK12 (ENSACIG00000021712) #29	ENSACIG00000021721 #31	ENSACIG00000021728 #31	ENSACIG00000021743 #31	itga9 (ENSACIG00000021762) #32	ENSACIG00000021820	ZC3H6 (ENSACIG00000021843)
Pomacentridae	DUPLICATION
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.c #22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.d.c #22
Spiny chromis	MODERN SPECIES	1664																ENSAPOG00000008630 #22
Pomacentridae	ANCESTRAL SPECIES	9	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Pomacentridae_A	ANCESTRAL SPECIES	7	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000011433.s.a.c #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Amphiprion	ANCESTRAL SPECIES	175	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017.p	ENSGT00390000011433.s.a.c #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d.d #22
Clown anemonefish	MODERN SPECIES	3485	ENSAOCG00000010163	col9a1b (ENSAOCG00000010103)	fam135a (ENSAOCG00000010024)	zgc:172136 (ENSAOCG00000009972)	ENSAOCG00000009950	ENSAOCG00000009926	SLC35F3 (ENSAOCG00000009901) #7	kcnk1b (ENSAOCG00000009855) #8	ENSAOCG00000009821 #10	agpat4 (ENSAOCG00000009687) #11	THBS2 (ENSAOCG00000000592) #12	ENSAOCG00000009520	PSME4 (ENSAOCG00000009496) #20	GPR75 (ENSAOCG00000000566)	erlec1 (ENSAOCG00000009379) #21	nrxn1b (ENSAOCG00000000563) #22	ENSAOCG00000009076	ENSAOCG00000002025
Orange clownfish	MODERN SPECIES	5	fam135a (ENSAPEG00000012871)	zgc:172136 (ENSAPEG00000012895)	ENSAPEG00000012906	ENSAPEG00000012925	SLC35F3 (ENSAPEG00000012939) #7	kcnk1b (ENSAPEG00000012959) #8	ENSAPEG00000013000 #10	ENSAPEG00000013190	agpat4 (ENSAPEG00000013212) #11	THBS2 (ENSAPEG00000013242) #12	ENSAPEG00000013336	ENSAPEG00000013368	PSME4 (ENSAPEG00000013431) #20	GPR75 (ENSAPEG00000013572)	erlec1 (ENSAPEG00000013586) #21	nrxn1b (ENSAPEG00000013674) #22	ENSAPEG00000013754	ENSAPEG00000013767	ENSAPEG00000013785	ENSAPEG00000013794	ENSAPEG00000013828	LHCGR (ENSAPEG00000013866) #23	gtf2a1l (ENSAPEG00000013898) #24	STON1 (ENSAPEG00000013911) #25	ppp1r21 (ENSAPEG00000013951) #26	FOXN2 (ENSAPEG00000014119)	ENSAPEG00000014176 ##28	msh6 (ENSAPEG00000014293)	KCNK12 (ENSAPEG00000014343) #29	ENSAPEG00000014358 #31	ENSAPEG00000014366 #31
Spiny chromis	MODERN SPECIES	945																nrxn1b (ENSAPOG00000002203) #22	nrxn1a (ENSAPOG00000002173)
Bicolor damselfish	MODERN SPECIES	442									agpat4 (ENSSPAG00000022207) #11	THBS2 (ENSSPAG00000022165) #12	ENSSPAG00000022145	ENSSPAG00000022133	PSME4 (ENSSPAG00000022078) #20	GPR75 (ENSSPAG00000022074)	erlec1 (ENSSPAG00000022060) #21	nrxn1b (ENSSPAG00000022027) #22
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT00940000158276	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00390000004172.g	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Fugu	MODERN SPECIES	16	rsph3 (ENSTRUG00000016315)	ENSTRUG00000028842	ENSTRUG00000016320	SLC35F3 (ENSTRUG00000030412) #7	kcnk1b (ENSTRUG00000016334) #8	ENSTRUG00000016338 #10	agpat4 (ENSTRUG00000016354) #11	THBS2 (ENSTRUG00000031037) #12	SLC35F3 (ENSTRUG00000016329) #7	ENSTRUG00000026015 #10	ENSTRUG00000027128	ENSTRUG00000016372	PSME4 (ENSTRUG00000016378) #20	GPR75 (ENSTRUG00000016399)	erlec1 (ENSTRUG00000016400) #21	nrxn1b (ENSTRUG00000016409) #22	ENSTRUG00000019977	LHCGR (ENSTRUG00000014020) #23	gtf2a1l (ENSTRUG00000024053) #24	STON1 (ENSTRUG00000013959) #25	ppp1r21 (ENSTRUG00000013766) #26	FOXN2 (ENSTRUG00000013724)	ENSTRUG00000013551 ##28	msh6 (ENSTRUG00000013478)	KCNK12 (ENSTRUG00000013473) #29	GOLGA4 (ENSTRUG00000013343) #31	itga9 (ENSTRUG00000013012) #32	ZC3H6 (ENSTRUG00000012901)	ENSTRUG00000012840 #34	ENSTRUG00000012656 #36	MERTK (ENSTRUG00000012242)
Tetraodon	MODERN SPECIES	9	fam135a (ENSTNIG00000016584)	zgc:172136 (ENSTNIG00000016585)	TARBP1 (ENSTNIG00000016586)	rsph3 (ENSTNIG00000016587)	ENSTNIG00000016588	SLC35F3 (ENSTNIG00000016589) #7	kcnk1b (ENSTNIG00000016590) #8	ENSTNIG00000016591 #10	agpat4 (ENSTNIG00000016592) #11	THBS2 (ENSTNIG00000016593) #12	ENSTNIG00000001688	ENSTNIG00000001096	PSME4 (ENSTNIG00000016594) #20	GPR75 (ENSTNIG00000016595)	erlec1 (ENSTNIG00000016596) #21	nrxn1b (ENSTNIG00000016597) #22	LHCGR (ENSTNIG00000016598) #23	STON1 (ENSTNIG00000016599) #25	ppp1r21 (ENSTNIG00000016600) #26	FOXN2 (ENSTNIG00000016601)	ENSTNIG00000016602 ##28	msh6 (ENSTNIG00000016603)	KCNK12 (ENSTNIG00000016604) #29	ENSTNIG00000016605 #29	GOLGA4 (ENSTNIG00000016606) #31	itga9 (ENSTNIG00000016607) #32	ZC3H6 (ENSTNIG00000016608)	ENSTNIG00000016609 #34	TMEM87B (ENSTNIG00000016610) #36	MERTK (ENSTNIG00000016611)	sft2d1 (ENSTNIG00000016612)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Ballan wrasse	MODERN SPECIES	51	fam135a (ENSLBEG00000012293)	zgc:172136 (ENSLBEG00000012206)	TARBP1 (ENSLBEG00000012132)	ENSLBEG00000012110	SLC35F3 (ENSLBEG00000012069) #7	kcnk1b (ENSLBEG00000012007) #8	ENSLBEG00000011825 #10	agpat4 (ENSLBEG00000011730) #11	THBS2 (ENSLBEG00000011604) #12	ENSLBEG00000011524	ENSLBEG00000011479	PSME4 (ENSLBEG00000011344) #20	GPR75 (ENSLBEG00000011300)	erlec1 (ENSLBEG00000011231) #21	ENSLBEG00000011199	NRXN1 (ENSLBEG00000011110) #22	LHCGR (ENSLBEG00000011063) #23	gtf2a1l (ENSLBEG00000011008) #24
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000158276	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000158276	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23
European seabass	MODERN SPECIES	1	lmbrd1 (ENSDLAG00005019575)	COL19A1 (ENSDLAG00005019537)	ENSDLAG00005019500	fam135a (ENSDLAG00005019353)	TARBP1 (ENSDLAG00005019113)	ENSDLAG00005027323 #7	kcnk1b (ENSDLAG00005027180) #8	ENSDLAG00005019057	ENSDLAG00005015953 #10	agpat4 (ENSDLAG00005015886) #11	ENSDLAG00005015473 #12	ENSDLAG00005015438	ENSDLAG00005014383 #20	ENSDLAG00005014210 #21	ENSDLAG00005030544	NRXN1 (ENSDLAG00005010554) #22	LHCGR (ENSDLAG00005010333) #23	GTF2A1L (ENSDLAG00005032828) #24	PPP1R21 (ENSDLAG00005009826) #26	FOXN2 (ENSDLAG00005033023)	ENSDLAG00005009587 ##28	msh6 (ENSDLAG00005009510)	ENSDLAG00005026949 #29	ENSDLAG00005008919 #31	itga9 (ENSDLAG00005008689) #32	ZC3H6 (ENSDLAG00005031590)	ENSDLAG00005033576 #34	ENSDLAG00005008592 #36	MERTK (ENSDLAG00005008421)	lhcgr (ENSDLAG00005008390) ##23	sft2d1 (ENSDLAG00005008313)
Large yellow croaker	MODERN SPECIES	2	ENSLCRG00005008766	fam135a (ENSLCRG00005008746)	zgc:172136 (ENSLCRG00005008743)	TARBP1 (ENSLCRG00005008723)	ENSLCRG00005008717	SLC35F3 (ENSLCRG00005008715) #7	kcnk1b (ENSLCRG00005008714) #8	ENSLCRG00005008712	ENSLCRG00005002210 #10	agpat4 (ENSLCRG00005002142) #11	THBS2 (ENSLCRG00005001662) #12	ENSLCRG00005001553	PSME4 (ENSLCRG00005016621) #20	GPR75 (ENSLCRG00005016609)	erlec1 (ENSLCRG00005016509) #21	nrxn1b (ENSLCRG00005013146) #22	LHCGR (ENSLCRG00005013089) #23	gtf2a1l (ENSLCRG00005013086) #24	STON1 (ENSLCRG00005013085) #25	ppp1r21 (ENSLCRG00005013026) #26	FOXN2 (ENSLCRG00005013024)	ENSLCRG00005012816 ##28	msh6 (ENSLCRG00005012814)	KCNK12 (ENSLCRG00005012813) #29	GOLGA4 (ENSLCRG00005012812) #31	itga9 (ENSLCRG00005012766) #32	ZC3H6 (ENSLCRG00005012758)	ENSLCRG00005012757 #34	ENSLCRG00005012755 #36	MERTK (ENSLCRG00005012751)	lhcgr (ENSLCRG00005012747) ##23
Gilthead seabream	MODERN SPECIES	6	ENSSAUG00010018490	fam135a (ENSSAUG00010018498)	zgc:172136 (ENSSAUG00010018524)	TARBP1 (ENSSAUG00010018534)	ENSSAUG00010018556	SLC35F3 (ENSSAUG00010018559) #7	kcnk1b (ENSSAUG00010018561) #8	ENSSAUG00010018576 #10	ENSSAUG00010022059	agpat4 (ENSSAUG00010022061) #11	THBS2 (ENSSAUG00010022066) #12	ENSSAUG00010023566	PSME4 (ENSSAUG00010023586) #20	GPR75 (ENSSAUG00010023619)	erlec1 (ENSSAUG00010023627) #21	nrxn1b (ENSSAUG00010023767) #22	ENSSAUG00010025536	LHCGR (ENSSAUG00010025540) #23	gtf2a1l (ENSSAUG00010025547) #24	STON1 (ENSSAUG00010025551) #25	ppp1r21 (ENSSAUG00010025560) #26	FOXN2 (ENSSAUG00010025584)	ENSSAUG00010025589 ##28	msh6 (ENSSAUG00010025603)	KCNK12 (ENSSAUG00010025605) #29	GOLGA4 (ENSSAUG00010025609) #31	itga9 (ENSSAUG00010025640) #32	ENSSAUG00010025649	ZC3H6 (ENSSAUG00010025650)	ENSSAUG00010025652 #34	ENSSAUG00010025654 #36
Perciformes	ANCESTRAL SPECIES	17	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23
Pike perch	MODERN SPECIES	10	col9a1b (ENSSLUG00000012722)	fam135a (ENSSLUG00000012691)	zgc:172136 (ENSSLUG00000012685)	TARBP1 (ENSSLUG00000012680)	ENSSLUG00000012674	SLC35F3 (ENSSLUG00000012642) #7	kcnk1b (ENSSLUG00000012635) #8	ENSSLUG00000012631	ENSSLUG00000008102 #10	agpat4 (ENSSLUG00000007886) #11	THBS2 (ENSSLUG00000004880) #12	ENSSLUG00000004729	PSME4 (ENSSLUG00000002206) #20	GPR75 (ENSSLUG00000002023)	erlec1 (ENSSLUG00000001976) #21	nrxn1b (ENSSLUG00000001201) #22	LHCGR (ENSSLUG00000001062) #23	gtf2a1l (ENSSLUG00000001051) #24	ENSSLUG00000001049	STON1 (ENSSLUG00000001047) #25	ppp1r21 (ENSSLUG00000000856) #26	FOXN2 (ENSSLUG00000000814)	ENSSLUG00000000671 ##28	msh6 (ENSSLUG00000000617)	KCNK12 (ENSSLUG00000000611) #29	GOLGA4 (ENSSLUG00000000476) #31	itga9 (ENSSLUG00000000343) #32	ZC3H6 (ENSSLUG00000000279)	ENSSLUG00000000274 #34	ENSSLUG00000000270 #36	MERTK (ENSSLUG00000000234)
Channel bull blenny	MODERN SPECIES	6	zgc:172136 (ENSCGOG00000017394)	TARBP1 (ENSCGOG00000017378)	ENSCGOG00000017375	SLC35F3 (ENSCGOG00000017373) #7	kcnk1b (ENSCGOG00000017372) #8	ENSCGOG00000017370	ENSCGOG00000015745 #10	agpat4 (ENSCGOG00000015457) #11	ENSCGOG00000015057 #12	THBS2 (ENSCGOG00000013876) #12	ENSCGOG00000013851	PSME4 (ENSCGOG00000011892) #20	GPR75 (ENSCGOG00000011823)	erlec1 (ENSCGOG00000011559) #21	ENSCGOG00000011552	nrxn1b (ENSCGOG00000008295) #22	LHCGR (ENSCGOG00000007939) #23	gtf2a1l (ENSCGOG00000007932) #24	STON1 (ENSCGOG00000007931) #25	ppp1r21 (ENSCGOG00000006886) #26	FOXN2 (ENSCGOG00000024538)	ENSCGOG00000024506 ##28	msh6 (ENSCGOG00000024492)	KCNK12 (ENSCGOG00000024491) #29	GOLGA4 (ENSCGOG00000024487) #31	ENSCGOG00000024482 #32	itga9 (ENSCGOG00000024460) #32	ZC3H6 (ENSCGOG00000024447)	ENSCGOG00000024444 #34	TMEM87B (ENSCGOG00000024440) #36	MERTK (ENSCGOG00000024432)
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000177029.b	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36
Lumpfish	MODERN SPECIES	6	pax2a (ENSCLMG00005001773)	cuedc2 (ENSCLMG00005001795)	hif1an (ENSCLMG00005001801)	wnt8b (ENSCLMG00005001839)	scdb (ENSCLMG00005001841)	trmt2b (ENSCLMG00005001842)	dnajb12a (ENSCLMG00005001843)	ENSCLMG00005001844	SPOCK2 (ENSCLMG00005001845)	tysnd1 (ENSCLMG00005001850)	sar1ab (ENSCLMG00005001852)	ppa1b (ENSCLMG00005001853)	PSME4 (ENSCLMG00005001911) #20	GPR75 (ENSCLMG00005003452)	erlec1 (ENSCLMG00005003462) #21	NRXN1 (ENSCLMG00005003554) #22	ENSCLMG00005003599	LHCGR (ENSCLMG00005003605) #23	ENSCLMG00005003616	STON1 (ENSCLMG00005003617) #25	ppp1r21 (ENSCLMG00005003647) #26	FOXN2 (ENSCLMG00005006460)	ENSCLMG00005006463 ##28	msh6 (ENSCLMG00005006697)	KCNK12 (ENSCLMG00005006707) #29	GOLGA4 (ENSCLMG00005006715) #31	itga9 (ENSCLMG00005007113) #32	ENSCLMG00005007119	ZC3H6 (ENSCLMG00005007120)	ENSCLMG00005007121 #34	TMEM87B (ENSCLMG00005007122) #36
Stickleback	MODERN SPECIES	6	ENSGACG00000005946	col9a1b (ENSGACG00000005921)	fam135a (ENSGACG00000005893)	zgc:172136 (ENSGACG00000005885)	TARBP1 (ENSGACG00000005865)	ENSGACG00000005859	SLC35F3 (ENSGACG00000005849) #7	kcnk1b (ENSGACG00000005832) #8	ENSGACG00000005813 #10	agpat4 (ENSGACG00000005781) #11	THBS2 (ENSGACG00000005771) #12	ENSGACG00000005759	PSME4 (ENSGACG00000005686) #20	ENSGACG00000005682	erlec1 (ENSGACG00000005596) #21	nrxn1b (ENSGACG00000005573) #22	LHCGR (ENSGACG00000005554) #23	STON1 (ENSGACG00000005527) #25	ppp1r21 (ENSGACG00000005491) #26	FOXN2 (ENSGACG00000005486)	ENSGACG00000005432 ##28	msh6 (ENSGACG00000005392)	KCNK12 (ENSGACG00000005387) #29	GOLGA4 (ENSGACG00000005370) #31	itga9 (ENSGACG00000005354) #32	ZC3H6 (ENSGACG00000005343)	ENSGACG00000005336 #34	ENSGACG00000005326 #36	MERTK (ENSGACG00000005304)	sft2d1 (ENSGACG00000005268)	TBXT (ENSGACG00000005258)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Anabantaria	ANCESTRAL SPECIES	17	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Zig-zag eel	MODERN SPECIES	6	TARBP1 (ENSMAMG00000021760)	ENSMAMG00000021753	ENSMAMG00000021748 #7	kcnk1b (ENSMAMG00000021745) #8	ENSMAMG00000021743	ENSMAMG00000021703 #10	agpat4 (ENSMAMG00000021738) #11	ENSMAMG00000021682 #12	ENSMAMG00000024937	ENSMAMG00000021677	ENSMAMG00000021668	PSME4 (ENSMAMG00000021658) #20	ENSMAMG00000021657	erlec1 (ENSMAMG00000021651) #21	ENSMAMG00000021645	NRXN1 (ENSMAMG00000021625) #22	LHCGR (ENSMAMG00000021622) #23	gtf2a1l (ENSMAMG00000021615) #24	STON1 (ENSMAMG00000021612) #25	ppp1r21 (ENSMAMG00000021599) #26	FOXN2 (ENSMAMG00000027340)	ENSMAMG00000021581 ##28	msh6 (ENSMAMG00000021571)	ENSMAMG00000021566 #29	ENSMAMG00000021562 #31	itga9 (ENSMAMG00000021548) #32	ZC3H6 (ENSMAMG00000021546)	ENSMAMG00000021537 #34	ENSMAMG00000021535 #36	MERTK (ENSMAMG00000025707)	lhcgr (ENSMAMG00000020043) ##23
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00900000143203	ENSGT00940000165701 #10	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Siamese fighting fish	MODERN SPECIES	6	lmbrd1 (ENSBSLG00000022884)	ADGRB3 (ENSBSLG00000021586)	ENSBSLG00000021389	PHF3 (ENSBSLG00000021295)	ENSBSLG00000021276	khdrbs2 (ENSBSLG00000021217)	prim2 (ENSBSLG00000021127)	agpat4 (ENSBSLG00000020964) #11	THBS2 (ENSBSLG00000019337) #12	ENSBSLG00000019310	PSME4 (ENSBSLG00000017025) #20	GPR75 (ENSBSLG00000015928)	erlec1 (ENSBSLG00000015870) #21	ENSBSLG00000015864	ENSBSLG00000015863	nrxn1b (ENSBSLG00000013551) #22	LHCGR (ENSBSLG00000013219) #23	gtf2a1l (ENSBSLG00000020436) #24	STON1 (ENSBSLG00000020435) #25	ppp1r21 (ENSBSLG00000020417) #26	FOXN2 (ENSBSLG00000020404)	ENSBSLG00000020227 ##28	msh6 (ENSBSLG00000020212)	KCNK12 (ENSBSLG00000020211) #29	GOLGA4 (ENSBSLG00000020174) #31	itga9 (ENSBSLG00000019977) #32	ZC3H6 (ENSBSLG00000019952)	ENSBSLG00000019933 #34	ENSBSLG00000019804 #36	MERTK (ENSBSLG00000019749)	lhcgr (ENSBSLG00000019732) ##23
Climbing perch	MODERN SPECIES	6	zgc:172136 (ENSATEG00000020306)	TARBP1 (ENSATEG00000020266)	ENSATEG00000020236 #7	kcnk1b (ENSATEG00000025224) #8	ENSATEG00000025457	ENSATEG00000020068 #10	agpat4 (ENSATEG00000020027) #11	ENSATEG00000019901 #12	ENSATEG00000030197	ENSATEG00000019885	PSME4 (ENSATEG00000019773) #20	ENSATEG00000019762	erlec1 (ENSATEG00000019717) #21	ENSATEG00000019697	ENSATEG00000019686	NRXN1 (ENSATEG00000019591) #22	LHCGR (ENSATEG00000019538) #23	gtf2a1l (ENSATEG00000027167) #24	STON1 (ENSATEG00000019499) #25	ppp1r21 (ENSATEG00000019424) #26	FOXN2 (ENSATEG00000019400)	ENSATEG00000019323 ##28	msh6 (ENSATEG00000019268)	ENSATEG00000019248 #29	ENSATEG00000019186 #31	itga9 (ENSATEG00000019109) #32	ENSATEG00000019078	ENSATEG00000019063	ENSATEG00000019031 #34	ENSATEG00000018993	lhcgr (ENSATEG00000018069) ##23
Carangaria	ANCESTRAL SPECIES	19	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Carangaria_A	ANCESTRAL SPECIES	29	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Seriola	ANCESTRAL SPECIES	14	ENSGT00940000157935.b	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Greater amberjack	MODERN SPECIES	30												ENSSDUG00000007087	PSME4 (ENSSDUG00000006984) #20	GPR75 (ENSSDUG00000006967)	erlec1 (ENSSDUG00000006899) #21	nrxn1b (ENSSDUG00000006832) #22	LHCGR (ENSSDUG00000006811) #23	gtf2a1l (ENSSDUG00000006789) #24	STON1 (ENSSDUG00000006775) #25	ppp1r21 (ENSSDUG00000006647) #26	FOXN2 (ENSSDUG00000006615)	ENSSDUG00000006533 ##28	msh6 (ENSSDUG00000006464)	KCNK12 (ENSSDUG00000006438) #29	GOLGA4 (ENSSDUG00000006326) #31	itga9 (ENSSDUG00000006163) #32	ENSSDUG00000006118	ZC3H6 (ENSSDUG00000006105)	ENSSDUG00000006046 #34	TMEM87B (ENSSDUG00000006017) #36	MERTK (ENSSDUG00000005985)
Yellowtail amberjack	MODERN SPECIES	2884	TARBP1 (ENSSLDG00000020200)	ENSSLDG00000020256	SLC35F3 (ENSSLDG00000020267) #7	kcnk1b (ENSSLDG00000020290) #8	ENSSLDG00000020326 #10	ENSSLDG00000020518	agpat4 (ENSSLDG00000020541) #11	agpat4 (ENSSLDG00000020579) #11	THBS2 (ENSSLDG00000020615) #12	ENSSLDG00000020689	ENSSLDG00000020712	PSME4 (ENSSLDG00000020757) #20	GPR75 (ENSSLDG00000020978)	erlec1 (ENSSLDG00000020984) #21	ENSSLDG00000021040	nrxn1b (ENSSLDG00000021098) #22	LHCGR (ENSSLDG00000021349) #23	gtf2a1l (ENSSLDG00000021374) #24	STON1 (ENSSLDG00000021433) #25	ppp1r21 (ENSSLDG00000021448) #26	FOXN2 (ENSSLDG00000021540)	ENSSLDG00000021561 ##28	msh6 (ENSSLDG00000021628)	ENSSLDG00000021660 #29	GOLGA4 (ENSSLDG00000021666) #31	itga9 (ENSSLDG00000021690) #32	ENSSLDG00000021799	ZC3H6 (ENSSLDG00000021813)	ENSSLDG00000021832 #34	ENSSLDG00000021855 #36	MERTK (ENSSLDG00000021879)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1336																ENSLCAG00010000026 #22
Barramundi perch	MODERN SPECIES	169	COL9A1 (ENSLCAG00010017127)	fam135a (ENSLCAG00010017105)	zgc:172136 (ENSLCAG00010017081)	ENSLCAG00010017072	SLC35F3 (ENSLCAG00010017068) #7	kcnk1b (ENSLCAG00010017064) #8	ENSLCAG00010017062	ENSLCAG00010016698 #10	agpat4 (ENSLCAG00010016557) #11	THBS2 (ENSLCAG00010016264) #12	ENSLCAG00010016138	PSME4 (ENSLCAG00010015920) #20	GPR75 (ENSLCAG00010015846)	erlec1 (ENSLCAG00010015826) #21	ENSLCAG00010015819	nrxn1b (ENSLCAG00010015182) #22	LHCGR (ENSLCAG00010014915) #23	gtf2a1l (ENSLCAG00010014904) #24
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000157565	ENSGT00940000162787.c	ENSGT00390000003939	ENSGT00940000166602.B	ENSGT00390000008727.a.a.d #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00900000143203	ENSGT00950000182836.b.b.b.b #11	ENSGT00940000157846.c #12	ENSGT00390000012017	ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000177029.b	ENSGT00940000154292.a.b.d #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Tongue sole	MODERN SPECIES	3	fam135a (ENSCSEG00000005211)	zgc:172136 (ENSCSEG00000005236)	TARBP1 (ENSCSEG00000005255)	ENSCSEG00000005282	SLC35F3 (ENSCSEG00000005906) #7	kcnk1b (ENSCSEG00000005918) #8	ENSCSEG00000005931 #10	ENSCSEG00000005969	agpat4 (ENSCSEG00000005977) #11	THBS2 (ENSCSEG00000006006) #12	ENSCSEG00000006045	ENSCSEG00000006049	PSME4 (ENSCSEG00000006059) #20	GPR75 (ENSCSEG00000006128)	erlec1 (ENSCSEG00000006132) #21	nrxn1b (ENSCSEG00000006156) #22	ENSCSEG00000006277	ENSCSEG00000006279	ENSCSEG00000006282 #23	gtf2a1l (ENSCSEG00000006290) #24	ENSCSEG00000006294	morn4 (ENSCSEG00000006299)	ANKRD2 (ENSCSEG00000006304) ##37	st3gal7 (ENSCSEG00000006314)	hps1 (ENSCSEG00000006320)	HPSE2 (ENSCSEG00000006339)	CNNM1 (ENSCSEG00000006403)	got1 (ENSCSEG00000006415)	nkx2.3 (ENSCSEG00000006432)	nkx3.3 (ENSCSEG00000006437)	slc25a28 (ENSCSEG00000006441)
Turbot	MODERN SPECIES	6	ENSSMAG00000006889	col9a1b (ENSSMAG00000006956)	fam135a (ENSSMAG00000006999)	zgc:172136 (ENSSMAG00000007052)	TARBP1 (ENSSMAG00000007081)	ENSSMAG00000007120 #7	kcnk1b (ENSSMAG00000007131) #8	ENSSMAG00000007154 #10	ENSSMAG00000007353	agpat4 (ENSSMAG00000007368) #11	ENSSMAG00000007386 #12	ENSSMAG00000007476	PSME4 (ENSSMAG00000007512) #20	ENSSMAG00000007593	erlec1 (ENSSMAG00000007601) #21	NRXN1 (ENSSMAG00000007668) #22	ENSSMAG00000007966	LHCGR (ENSSMAG00000037621) #23	LHCGR (ENSSMAG00000007980) #23	STON1 (ENSSMAG00000008014) #25	PPP1R21 (ENSSMAG00000008023) #26	FOXN2 (ENSSMAG00000008132)	ENSSMAG00000008157 ##28	ENSSMAG00000008237	ENSSMAG00000024041 #29	ENSSMAG00000008299 #31	itga9 (ENSSMAG00000008347) #32	ENSSMAG00000008397	ENSSMAG00000008411	ENSSMAG00000008458 #34	ENSSMAG00000008523
Euteleosteomorpha	DUPLICATION
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Salmoninae	ANCESTRAL SPECIES	330																ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.f	ENSGT00390000012424.a.g	ENSGT00390000011640.h	ENSGT00940000159867.n	ENSGT00940000154644.jb.a.a	ENSGT00950000182898.a.a.a.a.a.g.j.b	ENSGT00940000154035.a	ENSGT00940000161268.j	ENSGT00930000151033.c	ENSGT00940000159305.o	ENSGT00940000163587.a.b.b.e.b.f	ENSGT00940000168324.c.b	ENSGT00950000183153.c.a.r.f	ENSGT00940000160688.l	ENSGT00940000159816.h
Huchen	DUPLICATION
Huchen	MODERN SPECIES	126															ENSHHUG00000001209	ENSHHUG00000001192 ##22	MAP3K11 (ENSHHUG00000001163)	drap1 (ENSHHUG00000001155)	ENSHHUG00000001079	rela (ENSHHUG00000000983)	ENSHHUG00000000329	ENSHHUG00000000280	ENSHHUG00000000211	ENSHHUG00000000199	POLR2A (ENSHHUG00000000162)	capgb (ENSHHUG00000000059)	ENSHHUG00000000015	ENSHHUG00000042838	ENSHHUG00000042825	ENSHHUG00000042818	SLC2A4 (ENSHHUG00000042100)
Huchen	MODERN SPECIES	2688																ENSHHUG00000042900 ##22	MAP3K11 (ENSHHUG00000042889)	drap1 (ENSHHUG00000042882)	zgc:63470 (ENSHHUG00000042879)	rela (ENSHHUG00000042868)	ENSHHUG00000042866
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Ovalentaria	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Atherinomorphae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Cyprinodontiformes	ANCESTRAL SPECIES	214																ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.g
Cyprinodontoidei	ANCESTRAL SPECIES	50	ENSGT00390000009529	ENSGT00390000003894	ENSGT01090000260120	ENSGT00940000157535.m.a	ENSGT00390000006979.a	ENSGT00510000049875	ENSGT00940000164430.a.b.a.d.a	ENSGT00940000164430.a.b.a.d.b	ENSGT00940000164430.a.b.a.c	ENSGT00940000159753	ENSGT00940000160483.k.b	ENSGT00940000155978.a.a	ENSGT01030000234819	ENSGT00940000163749	ENSGT00940000161064.h	ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.g	ENSGT00390000012424.a	ENSGT00390000011640	ENSGT00940000159867	ENSGT00940000154644.jb.a	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000177059	ENSGT00940000162871	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000176978.a	ENSGT00950000183337	ENSGT00940000157318	ENSGT00390000005589.a.a
NAME_4	ANCESTRAL SPECIES	242																ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.h	ENSGT00390000012424.a	ENSGT00390000011640	ENSGT00940000159867	ENSGT00940000154644.jb.a	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000162871	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000176978.a	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a
Sheepshead minnow	MODERN SPECIES	174														ENSCVAG00000002955	NRXN2 (ENSCVAG00000002944)	ENSCVAG00000002891 ##22	ENSCVAG00000002870	drap1 (ENSCVAG00000002854)	rela (ENSCVAG00000023334)	zgc:63470 (ENSCVAG00000023330)	ENSCVAG00000023324	SLC29A2 (ENSCVAG00000023300)
Poeciliinae	ANCESTRAL SPECIES	40	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260120	ENSGT00940000157535.m.a	ENSGT00390000006979.a	ENSGT00510000049875	ENSGT00940000164430.a.b.a.d.a	ENSGT00940000164430.a.b.a.d.b	ENSGT00940000164430.a.b.a.c	ENSGT00940000159753	ENSGT00940000160483.k.b	ENSGT00940000155978.a.a	ENSGT01030000234819	ENSGT00940000163749	ENSGT00940000161064.h	ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.g	ENSGT00390000012424.a	ENSGT00390000011640	ENSGT00940000159867	ENSGT00940000154644.jb.a	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000177059	ENSGT00940000162871	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000176978.a.a	ENSGT00940000176978.b.b	ENSGT00940000176978.a.b	ENSGT00940000176978.b.a.a.a
Poecilia	ANCESTRAL SPECIES	40	ENSGT00940000155795.f	ENSGT00390000009529	ENSGT01090000260120	ENSGT00940000157535.m.a	ENSGT00390000006979.a	ENSGT00510000049875	ENSGT00940000164430.a.b.a.d.a	ENSGT00940000164430.a.b.a.d.b	ENSGT00940000164430.a.b.a.c	ENSGT00940000159753	ENSGT00940000160483.k.b	ENSGT00940000155978.a.a	ENSGT01030000234819	ENSGT00940000163749	ENSGT00940000161064.h	ENSGT00940000154292.a.b.c.a ##22	ENSGT00940000161064.g	ENSGT00390000012424.a	ENSGT00390000011640	ENSGT00940000159867	ENSGT00940000154644.jb.a	ENSGT00950000182898.a.a.a.a.a.g	ENSGT00940000177059	ENSGT00940000162871	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000176978.a.a	ENSGT00940000176978.b.b	ENSGT00940000176978.a.b	ENSGT00940000176978.b.a.a.a
Guppy	MODERN SPECIES	448	ndufs2 (ENSPREG00000000871)	ENSPREG00000000864	ENSPREG00000000818	otub1b (ENSPREG00000000776)	cskmt (ENSPREG00000000773)	epdl1 (ENSPREG00000000739)	ENSPREG00000000696	ENSPREG00000000667	ALPK1 (ENSPREG00000000599)	ENSPREG00000000571	RASGRP2 (ENSPREG00000022093)	ENSPREG00000022083	ENSPREG00000022074	ENSPREG00000022053	ENSPREG00000022040	ENSPREG00000022028 ##22	MAP3K11 (ENSPREG00000022005)	drap1 (ENSPREG00000021987)	zgc:63470 (ENSPREG00000021977)	rela (ENSPREG00000021967)	PPP1CB (ENSPREG00000021947)	SLC29A2 (ENSPREG00000021932)	ENSPREG00000021925	ENSPREG00000021921	S100P (ENSPREG00000021912)	kiaa0232 (ENSPREG00000021904)	TBC1D14 (ENSPREG00000021882)	ENSPREG00000021864	ENSPREG00000021859	ENSPREG00000021854	ENSPREG00000021842
Ovalentaria_B	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Pomacentridae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.a ##22
Clown anemonefish	MODERN SPECIES	2386													cratb (ENSAOCG00000010659)	ppt2b (ENSAOCG00000010679)	rps5 (ENSAOCG00000010721)	ENSAOCG00000010756 ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.b ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.b ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.c.b ##22
Huchen	MODERN SPECIES	4940															ENSHHUG00000039843	ENSHHUG00000039839 ##22
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00390000008727.a.a.d.i #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00990000204854 #9	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029.a.a	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000163749	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00950000182980.a.b.b.b.hc	ENSGT00940000164285.a.e	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.b.a	ENSGT01030000234573.B.c.b.a	ENSGT00990000203619.A.b.b.b.a.e.l	ENSGT01100000263502.B.a.a.d.b.c.b	ENSGT00940000155571.B	ENSGT00950000183027.a.b.c.b	ENSGT00950000183054.b.c
Clupeiformes	ANCESTRAL SPECIES	508									ENSGT01100000263542.C	ENSGT00390000008727.a.a.d.i #7	ENSGT00940000155293.a.a #8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.a #22
Atlantic herring	MODERN SPECIES	7	caprin2 (ENSCHAG00000021803)	ipo8 (ENSCHAG00000020555)	TMTC1 (ENSCHAG00000020489)	ovch1 (ENSCHAG00000020480)	lmf2b (ENSCHAG00000019968)	entpd1 (ENSCHAG00000019887)	slc35f3a (ENSCHAG00000019876) #7	kcnk1a (ENSCHAG00000019870) #8	ENSCHAG00000016817 ##12	ENSCHAG00000016737	psme4b (ENSCHAG00000012630) ##20	chac2 (ENSCHAG00000012521)	asb3 (ENSCHAG00000012430)	ENSCHAG00000012409	ENSCHAG00000012404	ENSCHAG00000011656 #22	tbc1d22a (ENSCHAG00000010757)	cerk (ENSCHAG00000010725)	GRAMD4 (ENSCHAG00000009568)	ENSCHAG00000009541	tafa5a (ENSCHAG00000009529)	PIM3 (ENSCHAG00000009507)	ENSCHAG00000009482	ENSCHAG00000009440	ENSCHAG00000009420	ENSCHAG00000009326	USP15 (ENSCHAG00000007794)	ENSCHAG00000006632	ENSCHAG00000006524	KDM5A (ENSCHAG00000003306)	ENSCHAG00000002998
Denticle herring	MODERN SPECIES	6	ENSDCDG00000035910	acsl5 (ENSDCDG00000035911)	zdhhc6 (ENSDCDG00000035912)	vti1a (ENSDCDG00000013025)	tcf7l2 (ENSDCDG00000013241)	crygmxl2 (ENSDCDG00000013358)	crygmx (ENSDCDG00000013374)	aldh18a1 (ENSDCDG00000013580)	entpd1 (ENSDCDG00000015703)	slc35f3a (ENSDCDG00000015710) #7	kcnk1a (ENSDCDG00000015715) #8	ENSDCDG00000015971 ##12	psme4b (ENSDCDG00000021867) ##20	chac2 (ENSDCDG00000021903)	asb3 (ENSDCDG00000021953)	ENSDCDG00000022073 #22	fshr (ENSDCDG00000025133)	msh2 (ENSDCDG00000025489)	mta3 (ENSDCDG00000025739)	ENSDCDG00000028550	ENSDCDG00000028579	ENSDCDG00000028580	ENSDCDG00000028582	ENSDCDG00000028585	si:ch211-214j24.10 (ENSDCDG00000028589)	osgep (ENSDCDG00000028600)	apex1 (ENSDCDG00000028610)	zgc:113263 (ENSDCDG00000028617)	ENSDCDG00000028625	ENSDCDG00000028629	ENSDCDG00000028634
Otophysi	ANCESTRAL SPECIES		ENSGT00390000008727.a.a.d.i #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00990000204854 #9	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029.a.a	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000163749.b	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23	ENSGT00940000161693	ENSGT00390000003178
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000164397.a	ENSGT00940000157107.a.a	ENSGT00390000018119	ENSGT00390000018109	ENSGT00530000063652.b.a	ENSGT00940000155590.i	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00950000182849.B.c.b.b	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00390000016550	ENSGT00930000151032.B	ENSGT00940000159080	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23	ENSGT00940000161693	ENSGT00940000178131
Channel catfish	MODERN SPECIES	4	sar1aa (ENSIPUG00000010046)	SPOCK2 (ENSIPUG00000010004)	ascc1 (ENSIPUG00000009943)	anapc16 (ENSIPUG00000009928)	ddit4 (ENSIPUG00000009920)	dnajb12 (ENSIPUG00000009889)	c13h17orf62 (ENSIPUG00000009877)	narf (ENSIPUG00000009858)	Slc9a3r1 (ENSIPUG00000009831)	mbtd1 (ENSIPUG00000009729)	tdrkh (ENSIPUG00000009673)	tmem94 (ENSIPUG00000009480)	ENSIPUG00000009393	asb3 (ENSIPUG00000009379)	ENSIPUG00000009365	ENSIPUG00000008972 #22	fshr (ENSIPUG00000008746)	foxn2 (ENSIPUG00000008720)	fbxo11 (ENSIPUG00000008553) ##28	MSH2 (ENSIPUG00000008454)	ENSIPUG00000008399	CALM (ENSIPUG00000008361)	socs5a (ENSIPUG00000008349)	gch2 (ENSIPUG00000008326)	cript (ENSIPUG00000008308)	pigf (ENSIPUG00000008235)	RHOQ (ENSIPUG00000008216)	cox7a2l (ENSIPUG00000008189)	KCNG3 (ENSIPUG00000008184)	mta3 (ENSIPUG00000008039)	OXER1 (ENSIPUG00000008015)
Characiphysae_b	ANCESTRAL SPECIES	3	ENSGT00940000164397.a	ENSGT00940000157107.a.a	ENSGT00390000018119	ENSGT00390000018109	ENSGT00530000063652.b.a	ENSGT00940000155590.i	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00950000182849.B.c.b.b	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00390000016550	ENSGT00930000151032.B	ENSGT00940000159080	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.b ##28	ENSGT00550000074867	ENSGT00390000018245	ENSGT00940000167711.a.a	ENSGT00940000164251.c	ENSGT00950000182980.a.b.b.b.hc	ENSGT00940000164285.a.e	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.f	ENSGT00390000016617	ENSGT00940000155970	ENSGT00940000154815.b.a	ENSGT00940000159658.b.a
Characoidei	ANCESTRAL SPECIES	6	ENSGT00940000164397.a	ENSGT00940000157107.a.a	ENSGT00390000018119	ENSGT00390000018109	ENSGT00530000063652.b.a	ENSGT00940000155590.i	ENSGT00390000004691	ENSGT00940000153514.a.b	ENSGT00950000182849.B.c.b.b	ENSGT00940000153840.a.a.a.a	ENSGT00940000166206	ENSGT00390000016550	ENSGT00930000151032.B	ENSGT00940000159080	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.b ##28	ENSGT00550000074867	ENSGT00950000182980.a.b.b.b.hc	ENSGT00940000164285.a.e	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.f	ENSGT00390000016617	ENSGT00940000155970	ENSGT00940000154815.b.a	ENSGT00940000159658.b.a	ENSGT01030000234573.B.c.b.a	ENSGT00990000203619.A.b.b.b.a.e.l	ENSGT00940000156070.a.b
Red-bellied piranha	MODERN SPECIES	3	ppa1a (ENSPNAG00000008606)	ENSPNAG00000001123	SPOCK2 (ENSPNAG00000008632)	ascc1 (ENSPNAG00000008666)	anapc16 (ENSPNAG00000008680)	ddit4 (ENSPNAG00000001155)	dnajb12b (ENSPNAG00000008719)	cybc1 (ENSPNAG00000001175)	narf (ENSPNAG00000008736)	nherf1a (ENSPNAG00000008743)	MBTD1 (ENSPNAG00000005449)	tdrkh (ENSPNAG00000008783)	TMEM94 (ENSPNAG00000008880)	ENSPNAG00000008915	asb3 (ENSPNAG00000008926)	ENSPNAG00000009070 #22	fshr (ENSPNAG00000009201)	foxn2b (ENSPNAG00000009227)	ENSPNAG00000009336 ##28	msh2 (ENSPNAG00000009400)	ENSPNAG00000009428	calm2b (ENSPNAG00000009449)	socs5a (ENSPNAG00000009458)	gch2 (ENSPNAG00000009481)	cript (ENSPNAG00000009503)	pigf (ENSPNAG00000009529)	rhoq (ENSPNAG00000009548)	cox7a2l (ENSPNAG00000009558)	KCNG3 (ENSPNAG00000009567)	mta3 (ENSPNAG00000009661)	OXER1 (ENSPNAG00000009683)
Mexicana tetra	MODERN SPECIES	21	SPOCK2 (ENSAMXG00000011715)	ascc1 (ENSAMXG00000011705)	anapc16 (ENSAMXG00000034010)	ddit4 (ENSAMXG00000042715)	dnajb12b (ENSAMXG00000029998)	cybc1 (ENSAMXG00000040081)	narf (ENSAMXG00000011681)	nherf1a (ENSAMXG00000011672)	MBTD1 (ENSAMXG00000011666)	tdrkh (ENSAMXG00000011664)	TMEM94 (ENSAMXG00000011661)	ENSAMXG00000011641	asb3 (ENSAMXG00000030442)	ENSAMXG00000036920	ENSAMXG00000041026	ENSAMXG00000011628 #22	fshr (ENSAMXG00000011613)	foxn2b (ENSAMXG00000040568)	ENSAMXG00000011591 ##28	msh2 (ENSAMXG00000015880)	ENSAMXG00000015893	calm2b (ENSAMXG00000031853)	socs5a (ENSAMXG00000025122)	gch2 (ENSAMXG00000039949)	ENSAMXG00000025123	cript (ENSAMXG00000037075)	pigf (ENSAMXG00000041319)	rhoq (ENSAMXG00000015971)	ENSAMXG00000039574	cox7a2l (ENSAMXG00000030489)	KCNG3 (ENSAMXG00000043786)
Electric eel	MODERN SPECIES	62	ENSEEEG00000016008	SPOCK2 (ENSEEEG00000016016)	ascc1 (ENSEEEG00000016020)	anapc16 (ENSEEEG00000016023)	ddit4 (ENSEEEG00000016026)	dnajb12b (ENSEEEG00000016029)	cybc1 (ENSEEEG00000016042)	narf (ENSEEEG00000016043)	nherf1a (ENSEEEG00000016059)	MBTD1 (ENSEEEG00000016060)	tdrkh (ENSEEEG00000016061)	TMEM94 (ENSEEEG00000016077)	ENSEEEG00000016441	asb3 (ENSEEEG00000016446)	ENSEEEG00000016447	ENSEEEG00000016452 #22	fshr (ENSEEEG00000016483)	foxn2b (ENSEEEG00000016493)	ENSEEEG00000016499 ##28	msh2 (ENSEEEG00000016977)	ENSEEEG00000016980	calm2b (ENSEEEG00000016981)	gch2 (ENSEEEG00000016983)	cript (ENSEEEG00000016984)	pigf (ENSEEEG00000016985)	rhoq (ENSEEEG00000016986)	cox7a2l (ENSEEEG00000016987)	KCNG3 (ENSEEEG00000016988)	mta3 (ENSEEEG00000016994)	zfp36l2 (ENSEEEG00000017042)	ppm1bb (ENSEEEG00000017043)
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b.c.b	ENSGT00940000158806	ENSGT00940000158582	ENSGT00940000166891.a	ENSGT00940000166891.b	ENSGT00940000154653	ENSGT01030000234540.A.a.a.w.a	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.b ##28	ENSGT00550000075024	ENSGT00940000161424.a #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00940000161847.a	ENSGT00690000102227	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669	ENSGT00940000157364.A ##23	ENSGT00940000161693
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	64	ENSGT00940000164184.f	ENSGT00940000156227.f.j	ENSGT00940000156625.p	ENSGT00940000156232.b.a	ENSGT00440000037780.a.y	ENSGT00940000154101.b.c.b.a	ENSGT00940000158806.r	ENSGT00940000158582.j	ENSGT00940000166891.a.g	ENSGT00940000154653.p.a	ENSGT00390000011433.s.b.b ##20	ENSGT00390000003855.a.a	ENSGT00940000159080.f	ENSGT00940000154292.a.b.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a.a #22	ENSGT00940000158952.h	ENSGT00940000159118.p.b	ENSGT00530000063425.a.a.b.a ##28	ENSGT00550000074867.r	ENSGT00950000182980.a.b.b.b.hc.a	ENSGT00940000164285.a.e.d	ENSGT00390000013481.c.b.a.h	ENSGT00950000183100.C.e.a	ENSGT00390000016617.s	ENSGT00940000155970.ab	ENSGT00940000154815.b.a.c.a.a	ENSGT00940000154815.b.a.d	ENSGT00940000159658.b.a.a	ENSGT01030000234573.B.c.b.a.a	ENSGT00990000203619.A.b.b.b.a.e.l.c
Goldfish	MODERN SPECIES	3	AFAP1 (ENSCARG00000014088)	rab18a (ENSCARG00000014022)	cdca9 (ENSCARG00000013992)	mkxa (ENSCARG00000013975)	ODAD2 (ENSCARG00000013961)	mpp7a (ENSCARG00000012737)	waca (ENSCARG00000012662)	bambia (ENSCARG00000012651)	MAP3K8 (ENSCARG00000012648)	MTPAP (ENSCARG00000012640)	ENSCARG00000012634	svila (ENSCARG00000012484)	psme4b (ENSCARG00000012316) ##20	chac2 (ENSCARG00000012289)	asb3 (ENSCARG00000012262)	ENSCARG00000006802 #22	foxn2b (ENSCARG00000006556)	ENSCARG00000005473 ##28	msh2 (ENSCARG00000005390)	calm2b (ENSCARG00000005358)	gch2 (ENSCARG00000005337)	CRIPT (ENSCARG00000005325)	pigf (ENSCARG00000005319)	rhoq (ENSCARG00000005311)	cox7a2l (ENSCARG00000005302)	efna5b (ENSCARG00000005293)	dgcr6 (ENSCARG00000005282)	RASAL1 (ENSCARG00000005085)	DTX1 (ENSCARG00000005016)	ENSCARG00000004998	si:ch73-130a3.4 (ENSCARG00000004978)
Cyprininae_a	ANCESTRAL SPECIES	18	ENSGT00940000164184.f	ENSGT00940000156227.f.j	ENSGT00940000156625.p	ENSGT00940000156232.b.a	ENSGT00440000037780.a.y	ENSGT00940000154101.b.c.b.a	ENSGT00940000158806.r	ENSGT00940000158582.j	ENSGT00940000166891.a.g	ENSGT00940000154653.p.a	ENSGT00390000011433.s.b.b ##20	ENSGT00390000003855.a.a	ENSGT00940000159080.f	ENSGT00940000154292.a.b.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a.a #22	ENSGT00940000158952.h	ENSGT00940000159118.p.b	ENSGT00530000063425.a.a.b.a ##28	ENSGT00550000074867.r	ENSGT00950000182980.a.b.b.b.hc.a	ENSGT00940000164285.a.e.d	ENSGT00390000013481.c.b.a.h	ENSGT00950000183100.C.f	ENSGT00390000016617.s	ENSGT00940000155970.ab	ENSGT00940000154815.b.a.d	ENSGT00940000159658.b.a.a	ENSGT01030000234573.B.c.b.a.a	ENSGT00990000203619.A.b.b.b.a.e.l.c	ENSGT00940000161584.l.a
Common carp reference	MODERN SPECIES	25	cdca9 (ENSCCRG00000046835)	ENSCCRG00000058055	ENSCCRG00000001507	rab18a (ENSCCRG00000075147)	mkxa (ENSCCRG00000073641)	ODAD2 (ENSCCRG00000015428)	mpp7a (ENSCCRG00000061976)	waca (ENSCCRG00000026819)	bambia (ENSCCRG00000067488)	ENSCCRG00000020144	ENSCCRG00000020143	svila (ENSCCRG00000015186)	psme4b (ENSCCRG00000045880) ##20	chac2 (ENSCCRG00000080988)	asb3 (ENSCCRG00000045913)	ENSCCRG00000080925 #22	ENSCCRG00000047406	foxn2b (ENSCCRG00000067390)	ENSCCRG00000002427 ##28	msh2 (ENSCCRG00000061893)	calm2b (ENSCCRG00000082265)	socs5a (ENSCCRG00000061434)	gch2 (ENSCCRG00000067312)	cript (ENSCCRG00000019690)	pigf (ENSCCRG00000070582)	rhoq (ENSCCRG00000019701)	cox7a2l (ENSCCRG00000056079)	KCNG3 (ENSCCRG00000062429)	mta3 (ENSCCRG00000064946)	OXER1 (ENSCCRG00000069397)	zfp36l2 (ENSCCRG00000066647)
Golden-line barbel	MODERN SPECIES	385																ENSSGRG00000021643 #22	ENSSGRG00000021846	fshr (ENSSGRG00000021848)	foxn2b (ENSSGRG00000021850)	ENSSGRG00000021874 ##28	msh2 (ENSSGRG00000022768)	calm2b (ENSSGRG00000022781)	gch2 (ENSSGRG00000022901)	cript (ENSSGRG00000022908)	pigf (ENSSGRG00000022912)	rhoq (ENSSGRG00000022913)	cox7a2l (ENSSGRG00000022914)	mta3 (ENSSGRG00000022920)	OXER1 (ENSSGRG00000023152)	zfp36l2 (ENSSGRG00000023154)	ppm1bb (ENSSGRG00000023155)
Cyprininae	ANCESTRAL SPECIES	88	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a.f	ENSGT00940000164184.e	ENSGT00940000156227.f.i	ENSGT00940000156625.o	ENSGT00940000156232.b.b	ENSGT00440000037780.a.z	ENSGT00940000154101.b.c.b.b	ENSGT00940000158806.q	ENSGT00940000158582.i	ENSGT00940000166891.a.h	ENSGT00940000154653.p.b	ENSGT00390000011433.s.b.a ##20	ENSGT00390000003855.a.b	ENSGT00940000159080.e	ENSGT00940000154292.a.b.a.b #22	ENSGT00940000158952.g	ENSGT00940000159118.p.a	ENSGT00530000063425.a.a.b.b ##28	ENSGT00550000074867.q	ENSGT00950000182980.a.b.b.b.hc.b	ENSGT00940000164285.a.e.c	ENSGT00390000013481.c.b.a.g	ENSGT00950000183100.C.f	ENSGT00390000016617.t	ENSGT00940000155970.bb	ENSGT00940000154815.b.a.c.a.b	ENSGT00940000159658.b.a.b	ENSGT01030000234573.B.c.b.a.b	ENSGT00990000203619.A.b.b.b.a.e.l.d	ENSGT00940000161584.l.b
Goldfish	MODERN SPECIES	30	ABLIM2 (ENSCARG00000016243)	AFAP1 (ENSCARG00000016271)	rab18a (ENSCARG00000016409)	mkxa (ENSCARG00000016574)	ODAD2 (ENSCARG00000016619)	mpp7a (ENSCARG00000016886)	waca (ENSCARG00000018680)	bambia (ENSCARG00000018753)	MAP3K8 (ENSCARG00000018758)	MTPAP (ENSCARG00000018770)	ENSCARG00000018815	svila (ENSCARG00000019153)	psme4b (ENSCARG00000028435) ##20	ENSCARG00000032377	asb3 (ENSCARG00000032386)	ENSCARG00000032577 #22	ENSCARG00000038084	ENSCARG00000038088	fshr (ENSCARG00000038097)	foxn2b (ENSCARG00000038104)	ENSCARG00000038131 ##28	msh2 (ENSCARG00000038661)	calm2b (ENSCARG00000039693)	socs5a (ENSCARG00000039762)	gch2 (ENSCARG00000039792)	cript (ENSCARG00000039816)	pigf (ENSCARG00000039840)	rhoq (ENSCARG00000039851)	cox7a2l (ENSCARG00000039886)	KCNG3 (ENSCARG00000039891)	mta3 (ENSCARG00000040053)
Cyprininae_a	ANCESTRAL SPECIES	8	ENSGT00950000182850.a.b.a.a	ENSGT00950000183067.a.a.f	ENSGT00940000164184.e	ENSGT00940000156227.f.i	ENSGT00940000156625.o	ENSGT00940000156232.b.b	ENSGT00440000037780.a.z	ENSGT00940000154101.b.c.b.b	ENSGT00940000158806.q	ENSGT00940000158582.i	ENSGT00940000166891.a.h	ENSGT00940000154653.p.b	ENSGT00390000011433.s.b.a ##20	ENSGT00390000003855.a.b	ENSGT00940000159080.e	ENSGT00940000154292.a.b.a.b #22	ENSGT00940000158952.g	ENSGT00940000159118.p.a	ENSGT00530000063425.a.a.b.b ##28	ENSGT00550000074867.q	ENSGT00950000182980.a.b.b.b.hc.b	ENSGT00940000164285.a.e.c	ENSGT00390000013481.c.b.a.g	ENSGT00950000183100.C.e.b	ENSGT00390000016617.t	ENSGT00940000155970.bb	ENSGT00940000154815.b.a.c.a.a	ENSGT00940000159658.b.a.b	ENSGT01030000234573.B.c.b.a.b	ENSGT00990000203619.A.b.b.b.a.e.l.d	ENSGT00940000161584.l.b
Common carp reference	MODERN SPECIES	44	ENSCCRG00000066542	ENSCCRG00000004777	rab18a (ENSCCRG00000076010)	mkxa (ENSCCRG00000004485)	ODAD2 (ENSCCRG00000004379)	mpp7a (ENSCCRG00000004348)	waca (ENSCCRG00000020077)	bambia (ENSCCRG00000026806)	ENSCCRG00000020148	ENSCCRG00000061636	svila (ENSCCRG00000047293)	psme4b (ENSCCRG00000047187) ##20	chac2 (ENSCCRG00000045910)	asb3 (ENSCCRG00000015097)	ENSCCRG00000007045	ENSCCRG00000005363 #22	fshr (ENSCCRG00000064180)	foxn2b (ENSCCRG00000002444)	ENSCCRG00000058473 ##28	msh2 (ENSCCRG00000079291)	calm2b (ENSCCRG00000064783)	socs5a (ENSCCRG00000059664)	gch2 (ENSCCRG00000060432)	cript (ENSCCRG00000056291)	pigf (ENSCCRG00000003343)	rhoq (ENSCCRG00000073831)	cox7a2l (ENSCCRG00000077249)	KCNG3 (ENSCCRG00000005654)	mta3 (ENSCCRG00000010443)	OXER1 (ENSCCRG00000073858)	zfp36l2 (ENSCCRG00000055269)
Golden-line barbel	MODERN SPECIES	46															ENSSGRG00000046352	ENSSGRG00000044014 #22	fshr (ENSSGRG00000043987)	foxn2b (ENSSGRG00000043985)	ENSSGRG00000043974 ##28	msh2 (ENSSGRG00000043582)	calm2b (ENSSGRG00000043494)	socs5a (ENSSGRG00000043490)	ENSSGRG00000043489	cript (ENSSGRG00000043488)	pigf (ENSSGRG00000043487)	rhoq (ENSSGRG00000043483)	cox7a2l (ENSSGRG00000043481)	mta3 (ENSSGRG00000043259)	OXER1 (ENSSGRG00000043254)	zfp36l2 (ENSSGRG00000043253)	ppm1bb (ENSSGRG00000043251)
Otomorpha	ANCESTRAL SPECIES	1	ENSGT00940000155535	ENSGT00940000164940.a	ENSGT00940000164940.b	ENSGT00500000044903.b	ENSGT01100000263542.C	ENSGT00390000008727.a.a.d.i #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00990000204854 #9	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029.a.a	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000163749	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00950000182980.a.b.b.b.hc	ENSGT00940000164285.a.e	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.b.a	ENSGT01030000234573.B.c.b.a
Clupeiformes	ANCESTRAL SPECIES	451													ENSGT00390000011433.s.a #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000162193	ENSGT00550000074857
Denticle herring	MODERN SPECIES	18	lhcgr (ENSDCDG00000012143) ##23	MERTK (ENSDCDG00000012177)	TMEM87B (ENSDCDG00000012292) #36	ENSDCDG00000012692 #34	ZC3H6 (ENSDCDG00000012701)	ENSDCDG00000012704	itga9 (ENSDCDG00000012721) #32	GOLGA4 (ENSDCDG00000012893) #31	KCNK12 (ENSDCDG00000012922) #29	msh6 (ENSDCDG00000013015)	fbxo11a (ENSDCDG00000013147) #28	FOXN2 (ENSDCDG00000016671)	PSME4 (ENSDCDG00000016685) #20	GPR75 (ENSDCDG00000017197)	erlec1 (ENSDCDG00000017206) #21	nrxn1b (ENSDCDG00000017362) #22	LHCGR (ENSDCDG00000022642) #23	gtf2a1l (ENSDCDG00000022763) #24	STON1 (ENSDCDG00000022768) #25	ppp1r21 (ENSDCDG00000022775) #26	exoc1l (ENSDCDG00000022783)	smc2 (ENSDCDG00000022793)	ENSDCDG00000022824	ENSDCDG00000022827	ENSDCDG00000022830	zgc:172136 (ENSDCDG00000022833)	TARBP1 (ENSDCDG00000022839)	SLC35F3 (ENSDCDG00000022850) #7	kcnk1b (ENSDCDG00000022861) #8	ENSDCDG00000022901 #10	agpat4 (ENSDCDG00000026056) #11
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000024526	ENSCHAG00000024075	ENSCHAG00000024038	ENSCHAG00000024034	ENSCHAG00000024026	ENSCHAG00000024016	ENSCHAG00000024008	ENSCHAG00000024000	ENSCHAG00000023992	PSME4 (ENSCHAG00000022960) #20	GPR75 (ENSCHAG00000022883)	erlec1 (ENSCHAG00000022749) #21	ENSCHAG00000022731	ENSCHAG00000022723	ENSCHAG00000022715	NRXN1 (ENSCHAG00000022517) #22	LHCGR (ENSCHAG00000022457) #23	gtf2a1l (ENSCHAG00000022448) #24	STON1 (ENSCHAG00000022435) #25	ppp1r21 (ENSCHAG00000021670) #26	exoc1l (ENSCHAG00000021620)	smc2 (ENSCHAG00000021493)	FOXN2 (ENSCHAG00000021475)	fbxo11a (ENSCHAG00000020377) #28	msh6 (ENSCHAG00000020180)	ENSCHAG00000020163	GOLGA4 (ENSCHAG00000019954) #31	ENSCHAG00000019928	ENSCHAG00000019807 #34	ENSCHAG00000019779 #36	ENSCHAG00000019701
Otophysi	ANCESTRAL SPECIES		ENSGT00940000155535	ENSGT00940000164940.a	ENSGT00940000164940.b	ENSGT00500000044903.b	ENSGT01100000263542.C	ENSGT00390000008727.a.a.d.i #7	ENSGT00940000155293.a.a #8	ENSGT00940000165701 #10	ENSGT00990000204854 #9	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029.a.a	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000163749.b	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.a.a ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT01030000234543.E	ENSGT00940000157396	ENSGT00830000128368.b #34
Cyprinoidei	ANCESTRAL SPECIES	26	ENSGT00940000164184	ENSGT00940000156227.f	ENSGT00940000156625	ENSGT00940000156232.b	ENSGT00440000037780.a	ENSGT00940000154101.b.c.b	ENSGT00940000158806	ENSGT00940000158582	ENSGT00940000166891.a	ENSGT00940000166891.b	ENSGT00940000154653	ENSGT01030000234540.A.a.a.w.a	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a #22	ENSGT00940000158952	ENSGT00940000159118	ENSGT00530000063425.a.a.b ##28	ENSGT00550000075024	ENSGT00940000161424.a #29	ENSGT00730000111139 #31	ENSGT00940000156503 #32	ENSGT00940000157396	ENSGT00940000161847.a	ENSGT00690000102227	ENSGT00830000128368.b #34	ENSGT00940000156844.b #36	ENSGT00940000155669
Zebrafish	MODERN SPECIES	4	ENSDARG00000109285	ENSDARG00000109278	lgi1a (ENSDARG00000020493)	EFEMP1 (ENSDARG00000059121)	HEATR5B (ENSDARG00000059116)	fbxo28 (ENSDARG00000027159)	degs1 (ENSDARG00000007347)	nvl (ENSDARG00000025605)	ENSDARG00000094249	slit1a (ENSDARG00000044954)	tp53bp2a (ENSDARG00000009136)	ENSDARG00000113766	cutc (ENSDARG00000077306)	abcc2 (ENSDARG00000014031)	cox15 (ENSDARG00000075933)	nrxn1b (ENSDARG00000063635) #22	polh (ENSDARG00000070231)	gsta.2 (ENSDARG00000039832)	ENSDARG00000113274	ENSDARG00000090228	tmem14a (ENSDARG00000095157)	ENSDARG00000117000	ENSDARG00000115762	pcsk2 (ENSDARG00000019451)	BFSP1 (ENSDARG00000074919)	prokr1b (ENSDARG00000111213)	plek (ENSDARG00000104325)	cnrip1b (ENSDARG00000037337)	ppp3r1a (ENSDARG00000092659)	pno1 (ENSDARG00000008502)	dnaaf10 (ENSDARG00000037334)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	492	ENSGT00940000156288.b.a.a	ENSGT00940000156288.b.a.b	ENSGT00940000155043	ENSGT00510000052164.a.e	ENSGT00940000159330.e.a	ENSGT00940000164645.a	ENSGT00940000157837.c.b	ENSGT00390000002970.b	ENSGT00390000013448.a.a.g	ENSGT00940000162611.b.a.a	ENSGT00940000157322.b.a.c	ENSGT00940000153463.b.a.a	ENSGT00940000157798.a	ENSGT00940000164383.i	ENSGT00390000002223	ENSGT00940000154292.a.b.b.a.a #22	ENSGT00940000154292.a.b.b.a.b #22	ENSGT01090000260030.a.b.a.b.b.a.b.a.a.a.a.b.a.b.a.a.a.b.b	ENSGT00950000183052.a.a.b.a.a.b.b
Goldfish	MODERN SPECIES	4	ENSCARG00000050209	irf1a (ENSCARG00000050166)	ENSCARG00000050135	VIT (ENSCARG00000049936)	ENSCARG00000049863	HEATR5B (ENSCARG00000048553)	ENSCARG00000048507	fbxo28 (ENSCARG00000048502)	degs1 (ENSCARG00000048487)	nvl (ENSCARG00000048446)	ENSCARG00000048431	slit1a (ENSCARG00000046849)	tp53bp2a (ENSCARG00000046687)	cutc (ENSCARG00000046534)	ENSCARG00000044337	ENSCARG00000044154 #22	ENSCARG00000044143	ENSCARG00000044115	pno1 (ENSCARG00000044036)	dnaaf10 (ENSCARG00000043739)	cnrip1b (ENSCARG00000043719)	plek (ENSCARG00000043514)	ENSCARG00000017562	prokr1b (ENSCARG00000017551)	BFSP1 (ENSCARG00000017522)	pcsk2 (ENSCARG00000017217)	OTOR (ENSCARG00000017181)	GTPBP2 (ENSCARG00000017120)	ENSCARG00000017109	tmem14a (ENSCARG00000017089)	psmb1 (ENSCARG00000017029)
Cyprininae_a	ANCESTRAL SPECIES	335	ENSGT00940000156288.b.a.a	ENSGT00940000155043.f	ENSGT00940000164645.a.d	ENSGT00940000157837.c.a	ENSGT00390000006205.a	ENSGT00390000002970.a.a	ENSGT00390000013448.a.a.h	ENSGT00570000079239	ENSGT00940000162611.b.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a.d	ENSGT00940000153463.b.a.b	ENSGT00390000008454	ENSGT00940000164383.j	ENSGT00390000002223	ENSGT00940000154292.a.b.b.a.a #22	ENSGT00940000154292.a.b.b.a.b #22	ENSGT00950000183091.A.b.r	ENSGT00390000018052.d	ENSGT00940000156530.c.`b.b.e.b	ENSGT00390000004284.e.a	ENSGT00940000157885.a	ENSGT00940000166657.d	ENSGT00390000016976.d	ENSGT00940000156965.d	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000155636.b.b.b	ENSGT00940000158206.d	ENSGT00940000154526.a
Common carp reference	MODERN SPECIES	18	ENSCCRG00000061346	fbxo28 (ENSCCRG00000074796)	ENSCCRG00000081311	ENSCCRG00000080849	ENSCCRG00000052847	degs1 (ENSCCRG00000056597)	nvl (ENSCCRG00000055816)	ENSCCRG00000045777	slit1a (ENSCCRG00000082725)	tp53bp2a (ENSCCRG00000034125)	cutc (ENSCCRG00000074952)	ENSCCRG00000049662	ENSCCRG00000065931	cox15 (ENSCCRG00000001468)	ENSCCRG00000049565 #22	ENSCCRG00000015517 #22	dnaaf10 (ENSCCRG00000018475)	ENSCCRG00000070863	ENSCCRG00000081490	ENSCCRG00000061026	ENSCCRG00000070978	pno1 (ENSCCRG00000018512)	ppp3r1a (ENSCCRG00000065352)	plek (ENSCCRG00000015167)	cnrip1b (ENSCCRG00000066285)	prokr1b (ENSCCRG00000067016)	BFSP1 (ENSCCRG00000040795)	pcsk2 (ENSCCRG00000040428)	ENSCCRG00000063892	OTOR (ENSCCRG00000000836)	ENSCCRG00000061866
Golden-line barbel	MODERN SPECIES	634						EFEMP1 (ENSSGRG00000017082)	HEATR5B (ENSSGRG00000016971)	fbxo28 (ENSSGRG00000016962)	nvl (ENSSGRG00000016958)	ENSSGRG00000016957	slit1a (ENSSGRG00000015861)	tp53bp2a (ENSSGRG00000015839)	cutc (ENSSGRG00000015761)	ENSSGRG00000015605	cox15 (ENSSGRG00000015596)	nrxn1b (ENSSGRG00000015595) #22	ENSSGRG00000015594	ENSSGRG00000015593	DNAAF10 (ENSSGRG00000015592)	pno1 (ENSSGRG00000015590)	ppp3r1a (ENSSGRG00000015588)	plek (ENSSGRG00000015416)
Cyprininae	ANCESTRAL SPECIES	492	ENSGT00940000156288.b.a.b	ENSGT00940000155043	ENSGT00510000052164.a.e	ENSGT00940000159330.e.a	ENSGT00940000164645.a	ENSGT00940000157837.c.b	ENSGT00390000002970.b	ENSGT00390000013448.a.a.g	ENSGT00940000162611.b.a.a	ENSGT00940000157322.b.a.c	ENSGT00940000153463.b.a.a	ENSGT00940000157798.a	ENSGT00940000164383.i	ENSGT00390000002223	ENSGT00940000154292.a.b.b.a.a #22	ENSGT00940000154292.a.b.b.a.b #22	ENSGT01090000260030.a.b.a.b.b.a.b.a.a.a.a.b.a.b.a.a.a.b.b	ENSGT00950000183052.a.a.b.a.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	335	ENSGT00940000155043.f	ENSGT00940000164645.a.d	ENSGT00940000157837.c.a	ENSGT00390000006205.a	ENSGT00390000002970.a.a	ENSGT00390000013448.a.a.h	ENSGT00570000079239	ENSGT00940000162611.b.a.b	ENSGT00940000154965.A	ENSGT00940000157322.b.a.d	ENSGT00940000153463.b.a.b	ENSGT00390000008454	ENSGT00940000164383.j	ENSGT00390000002223	ENSGT00940000154292.a.b.b.a.a #22	ENSGT00940000154292.a.b.b.a.b #22	ENSGT00950000183091.A.b.r	ENSGT00390000018052.d	ENSGT00940000156530.c.`b.b.e.b	ENSGT00390000004284.e.a	ENSGT00940000157885.a	ENSGT00940000166657.d	ENSGT00390000016976.d	ENSGT00940000156965.d	ENSGT00950000182767.b.a.b.b.a	ENSGT00940000155636.b.b.b	ENSGT00940000158206.d	ENSGT00940000154526.a
Common carp reference	MODERN SPECIES	48	lgi1a (ENSCCRG00000068875)	ENSCCRG00000036209	ENSCCRG00000073463	fbxo28 (ENSCCRG00000036205)	degs1 (ENSCCRG00000067667)	ENSCCRG00000080831	slit1a (ENSCCRG00000034390)	ENSCCRG00000080800	tp53bp2a (ENSCCRG00000000113)	ENSCCRG00000000177	ENSCCRG00000006380	ENSCCRG00000008914	ENSCCRG00000052738	cox15 (ENSCCRG00000049621)	ENSCCRG00000063766	ENSCCRG00000030074 #22	ENSCCRG00000070050	ENSCCRG00000059129	ENSCCRG00000066056	ENSCCRG00000004121	ENSCCRG00000056091	ENSCCRG00000077864	ENSCCRG00000070835	ENSCCRG00000060253	ENSCCRG00000068757	dnaaf10 (ENSCCRG00000050061)	pno1 (ENSCCRG00000064184)	cnrip1b (ENSCCRG00000058935)	plek (ENSCCRG00000050078)	ENSCCRG00000077993	prokr1b (ENSCCRG00000051227)
Golden-line barbel	MODERN SPECIES	39	ENSSGRG00000001998	ENSSGRG00000001991	ENSSGRG00000001988	gsk3ab (ENSSGRG00000001965)	znf574 (ENSSGRG00000001962)	grik5 (ENSSGRG00000001930)	ENSSGRG00000001924	ENSSGRG00000001921	tp53bp2a (ENSSGRG00000001920)	KCNIP2 (ENSSGRG00000001919)	ENSSGRG00000001787	ENSSGRG00000001775	ches1 (ENSSGRG00000001774)	ENSSGRG00000001773	ENSSGRG00000001770	nrxn1b (ENSSGRG00000001316) #22	ENSSGRG00000001239
Goldfish	MODERN SPECIES	31	ENSCARG00000050618	ENSCARG00000050624	ENSCARG00000050628	ENSCARG00000050645	VIT (ENSCARG00000050687)	lgi1a (ENSCARG00000050741)	fbxo28 (ENSCARG00000050933)	degs1 (ENSCARG00000050939)	ENSCARG00000050951	slit1a (ENSCARG00000051117)	tp53bp2a (ENSCARG00000053693)	KCNIP2 (ENSCARG00000053838)	ENSCARG00000053880	cox15 (ENSCARG00000054342)	ENSCARG00000054393	nrxn1b (ENSCARG00000054460) #22	ENSCARG00000055712	ENSCARG00000055723	ENSCARG00000055730	ENSCARG00000055736	ENSCARG00000055742	PLPP4 (ENSCARG00000055766)	ENSCARG00000056139	XPO5 (ENSCARG00000056212)	ENSCARG00000057487	fbln5 (ENSCARG00000057525)	ENSCARG00000058326	plek2 (ENSCARG00000058331)	si:ch211-10a23.2 (ENSCARG00000058341)
Cyprininae	ANCESTRAL SPECIES	64		ENSGT00950000183067.a.a.e	ENSGT00940000164184.f	ENSGT00940000156227.f.j	ENSGT00940000156625.p	ENSGT00940000156232.b.a	ENSGT00440000037780.a.y	ENSGT00940000154101.b.c.b.a	ENSGT00940000158806.r	ENSGT00940000158582.j	ENSGT00940000166891.a.g	ENSGT00940000154653.p.a	ENSGT00390000011433.s.b.b ##20	ENSGT00390000003855.a.a	ENSGT00940000159080.f	ENSGT00940000154292.a.b.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a.a #22	ENSGT00940000158952.h	ENSGT00940000159118.p.b	ENSGT00530000063425.a.a.b.a ##28	ENSGT00550000074867.r	ENSGT00950000182980.a.b.b.b.hc.a	ENSGT00940000164285.a.e.d	ENSGT00390000013481.c.b.a.h	ENSGT00950000183100.C.e.a	ENSGT00390000016617.s	ENSGT00940000155970.ab	ENSGT00940000154815.b.a.c.a.a	ENSGT00940000154815.b.a.d	ENSGT00940000159658.b.a.a
Cyprininae_a	ANCESTRAL SPECIES	18		ENSGT00950000183067.a.a.e	ENSGT00940000164184.f	ENSGT00940000156227.f.j	ENSGT00940000156625.p	ENSGT00940000156232.b.a	ENSGT00440000037780.a.y	ENSGT00940000154101.b.c.b.a	ENSGT00940000158806.r	ENSGT00940000158582.j	ENSGT00940000166891.a.g	ENSGT00940000154653.p.a	ENSGT00390000011433.s.b.b ##20	ENSGT00390000003855.a.a	ENSGT00940000159080.f	ENSGT00940000154292.a.b.b.b #22	ENSGT00940000177029.a.a	ENSGT00940000154292.a.b.a.a #22	ENSGT00940000158952.h	ENSGT00940000159118.p.b	ENSGT00530000063425.a.a.b.a ##28	ENSGT00550000074867.r	ENSGT00950000182980.a.b.b.b.hc.a	ENSGT00940000164285.a.e.d	ENSGT00390000013481.c.b.a.h	ENSGT00950000183100.C.f	ENSGT00390000016617.s	ENSGT00940000155970.ab	ENSGT00940000154815.b.a.d	ENSGT00940000159658.b.a.a	ENSGT01030000234573.B.c.b.a.a
Common carp reference	MODERN SPECIES	18	ENSCCRG00000065520	ENSCCRG00000061346	fbxo28 (ENSCCRG00000074796)	ENSCCRG00000081311	ENSCCRG00000080849	ENSCCRG00000052847	degs1 (ENSCCRG00000056597)	nvl (ENSCCRG00000055816)	ENSCCRG00000045777	slit1a (ENSCCRG00000082725)	tp53bp2a (ENSCCRG00000034125)	cutc (ENSCCRG00000074952)	ENSCCRG00000049662	ENSCCRG00000065931	cox15 (ENSCCRG00000001468)	ENSCCRG00000049565 #22	ENSCCRG00000015517 #22	dnaaf10 (ENSCCRG00000018475)	ENSCCRG00000070863	ENSCCRG00000081490	ENSCCRG00000061026	ENSCCRG00000070978	pno1 (ENSCCRG00000018512)	ppp3r1a (ENSCCRG00000065352)	plek (ENSCCRG00000015167)	cnrip1b (ENSCCRG00000066285)	prokr1b (ENSCCRG00000067016)	BFSP1 (ENSCCRG00000040795)	pcsk2 (ENSCCRG00000040428)	ENSCCRG00000063892	OTOR (ENSCCRG00000000836)
Golden-line barbel	MODERN SPECIES	58	ABLIM2 (ENSSGRG00000025863)	AFAP1 (ENSSGRG00000025646)	ENSSGRG00000025644	mkxa (ENSSGRG00000025643)	ODAD2 (ENSSGRG00000025641)	mpp7a (ENSSGRG00000025640)	waca (ENSSGRG00000025639)	bambia (ENSSGRG00000025637)	MAP3K8 (ENSSGRG00000025636)	ENSSGRG00000025635	ENSSGRG00000025634	svila (ENSSGRG00000025459)	psme4b (ENSSGRG00000025178) ##20	chac2 (ENSSGRG00000025161)	asb3 (ENSSGRG00000025160)	ENSSGRG00000025157 #22
Characiphysae	ANCESTRAL SPECIES	114	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000157364.B #23	ENSGT00940000176000	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000177131	ENSGT00940000156568.r.a	ENSGT00390000006820 #26	ENSGT00440000033965	ENSGT00940000155559.a.a	ENSGT00390000018199.b	ENSGT00390000014001	ENSGT00390000012785	ENSGT00950000183059.b.a.b.q
Channel catfish	MODERN SPECIES	21	suclg1 (ENSIPUG00000015947)	ENSIPUG00000015942	rps7 (ENSIPUG00000015939)	lrrtm1 (ENSIPUG00000015932)	ctnna2 (ENSIPUG00000015855)	adra1d (ENSIPUG00000015829)	ENSIPUG00000015818	ENSIPUG00000015778	smox (ENSIPUG00000015754)	rnf24 (ENSIPUG00000015739)	FBXO41 (ENSIPUG00000015690)	ENSIPUG00000015685	mogs (ENSIPUG00000015678)	Mogs (ENSIPUG00000015668)	ENSIPUG00000015661	nrxn1b (ENSIPUG00000015520) #22	LHCGR (ENSIPUG00000015402) #23	gtf2a1l (ENSIPUG00000015378) #24	STON1 (ENSIPUG00000015372) #25	rps27a (ENSIPUG00000015317)	clhc1 (ENSIPUG00000015255)	rtn4 (ENSIPUG00000015207)	ppp1r21 (ENSIPUG00000015104) #26	ENSIPUG00000015090	ccdc88a (ENSIPUG00000014755)	ppp4r3b (ENSIPUG00000014682)	PNPT1 (ENSIPUG00000014624)	cfap36 (ENSIPUG00000014596)	pld5 (ENSIPUG00000014566)	STRN (ENSIPUG00000014190)	heatr5b (ENSIPUG00000014110)
Characiphysae_b	ANCESTRAL SPECIES	341															ENSGT00940000177029.b	ENSGT00940000154292.a.b.b #22	ENSGT00940000163749.b
Electric eel	MODERN SPECIES	187								ENSEEEG00000012101	ADRA1D (ENSEEEG00000012100)	smox (ENSEEEG00000012097)	rnf24 (ENSEEEG00000012096)	FBXO41 (ENSEEEG00000012095)	ENSEEEG00000012093	mogs (ENSEEEG00000012091)	ENSEEEG00000012090	nrxn1b (ENSEEEG00000012052) #22
Characoidei	ANCESTRAL SPECIES	133	ENSGT00940000156074.a.b	ENSGT00940000153745.b.f	ENSGT00940000156721	ENSGT00390000013285.g	ENSGT00940000156660	ENSGT00940000156351	ENSGT01030000234543.A.a	ENSGT00940000161705	ENSGT00940000160795	ENSGT00950000182934.a.a	ENSGT00940000157511	ENSGT00940000159443	ENSGT00530000063713.b.a	ENSGT00940000160184.c.b	ENSGT00390000017452	ENSGT00940000154292.a.b.b #22	ENSGT00940000163749.b	ENSGT00940000157364.B #23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000177131	ENSGT00940000156568.r.a	ENSGT00390000006820 #26	ENSGT00440000033965	ENSGT00940000155559.a.a	ENSGT00390000018199.b	ENSGT00390000014001	ENSGT00390000012785	ENSGT00950000183059.b.a.b.q
Mexicana tetra	MODERN SPECIES	13	ENSAMXG00000038878	ENSAMXG00000032330	ENSAMXG00000037149	ENSAMXG00000029932	ENSAMXG00000042821	ENSAMXG00000043772	ENSAMXG00000035261	ENSAMXG00000039503	ENSAMXG00000025549	ENSAMXG00000038836	smox (ENSAMXG00000004855)	ENSAMXG00000035254	rnf24 (ENSAMXG00000004867)	FBXO41 (ENSAMXG00000037362)	mogs (ENSAMXG00000029487)	nrxn1b (ENSAMXG00000000283) #22	ENSAMXG00000043081	ENSAMXG00000042595	ENSAMXG00000032474	ENSAMXG00000020132 #23	ENSAMXG00000020139	STON1 (ENSAMXG00000031020) #25	rps27a (ENSAMXG00000040689)	ENSAMXG00000020193	ENSAMXG00000042185	ENSAMXG00000040046	ppp1r21 (ENSAMXG00000020345) #26	prorsd1 (ENSAMXG00000025264)	CCDC88A (ENSAMXG00000020481)	PPP4R3C (ENSAMXG00000020618)	PNPT1 (ENSAMXG00000042321)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	571																NRXN1 (ENSPNAG00000011653) #22	nrxn1a (ENSPNAG00000001860)
Red-bellied piranha	MODERN SPECIES	156	ENSPNAG00000029014	cisd2 (ENSPNAG00000029003)	suclg1 (ENSPNAG00000004480)	ENSPNAG00000028976	ctnna2 (ENSPNAG00000028952)	LRRTM1 (ENSPNAG00000028901)	CTNNA2 (ENSPNAG00000005916)	ADRA1D (ENSPNAG00000028861)	ENSPNAG00000028860	ENSPNAG00000004447	smox (ENSPNAG00000004442)	rnf24 (ENSPNAG00000005051)	FBXO41 (ENSPNAG00000028757)	ENSPNAG00000028743	mogs (ENSPNAG00000004421)	ENSPNAG00000004415 #22
Osteoglossiformes	ANCESTRAL SPECIES	463											ENSGT01100000263542.C	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.a.h #20	ENSGT00940000159080	ENSGT00940000177029.a.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	344		aldh18a1 (ENSPKIG00000001496)	crygmxl2 (ENSPKIG00000001474)	tcf7l2 (ENSPKIG00000001419)	vti1a (ENSPKIG00000001358)	zdhhc6 (ENSPKIG00000001306)	acsl5 (ENSPKIG00000001235)	ENSPKIG00000001130	tectb (ENSPKIG00000001093)	ENSPKIG00000001083	GPAM (ENSPKIG00000000983)	kcnk1a (ENSPKIG00000000958) #8	THBS2 (ENSPKIG00000000928) ##12	asb3 (ENSPKIG00000024768)	ENSPKIG00000024756	ENSPKIG00000024637 #22	fbxo11a (ENSPKIG00000024461) #28
P. kingsleyae	MODERN SPECIES	184																nrxn1b (ENSPKIG00000002163) #22	ENSPKIG00000002440	LHCGR (ENSPKIG00000002456) #23	GTF2A1L (ENSPKIG00000002477) #24	ENSPKIG00000002489 #24	STON1 (ENSPKIG00000002500) #25	ppp1r21 (ENSPKIG00000002532) #26	FOXN2 (ENSPKIG00000002583)	ENSPKIG00000002607 ##28	msh6 (ENSPKIG00000002633)	ENSPKIG00000002664	ENSPKIG00000002703	ncoa4 (ENSPKIG00000002720)	TIMM23B (ENSPKIG00000002755)	QKI (ENSPKIG00000002778)	ENSPKIG00000002797
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	18	GPAM (ENSSFOG00015021655)	tectb (ENSSFOG00015021623)	acsl5 (ENSSFOG00015021510)	zdhhc6 (ENSSFOG00015021479)	vti1a (ENSSFOG00015021444)	tcf7l2 (ENSSFOG00015021035)	crygmxl2 (ENSSFOG00015020974)	aldh18a1 (ENSSFOG00015020936)	entpd1 (ENSSFOG00015020906)	SLC35F3 (ENSSFOG00015020900) #7	kcnk1a (ENSSFOG00015020890) #8	THBS2 (ENSSFOG00015020833) ##12	PSME4 (ENSSFOG00015020760) #20	asb3 (ENSSFOG00015030774)	ENSSFOG00015030631	ENSSFOG00015020525 #22	fshr (ENSSFOG00015028734)	ENSSFOG00015031167	fshr (ENSSFOG00015024708)	tbcc (ENSSFOG00015005101)	ENSSFOG00015005107	ENSSFOG00015005144	ENSSFOG00015005172	ENSSFOG00015005226	ENSSFOG00015030730	ENSSFOG00015018258	ENSSFOG00015008642	ENSSFOG00015005951	ENSSFOG00015005185	ENSSFOG00015029926	ENSSFOG00015032448
Asian bonytongue	MODERN SPECIES	19	otub1a (ENSSFOG00015031352)	ENSSFOG00015021850	NRG2 (ENSSFOG00015025951)	puraa (ENSSFOG00015029820)	PSD2 (ENSSFOG00015021796)	ENSSFOG00015025909	CXXC5 (ENSSFOG00015028761)	ube2d2 (ENSSFOG00015021755)	ENSSFOG00015021741	dnajc18 (ENSSFOG00015021720)	BRD8 (ENSSFOG00015021698)	RASGRP2 (ENSSFOG00015021580)	NRXN2 (ENSSFOG00015021521)	ENSSFOG00015021551	MAP3K11 (ENSSFOG00015024467)	ENSSFOG00015024612 #22	MAP3K11 (ENSSFOG00015021499)	PCNX3 (ENSSFOG00015021443)	zgc:165604 (ENSSFOG00015021420)	drap1 (ENSSFOG00015021405)	rela (ENSSFOG00015021380)	PPP1CB (ENSSFOG00015021367)	SLC29A2 (ENSSFOG00015021337)	cfbl (ENSSFOG00015021195)	bbs1 (ENSSFOG00015021161)	CAPN1 (ENSSFOG00015021141)	sf3b2 (ENSSFOG00015021125)	pacs1a (ENSSFOG00015021082)	actn3b (ENSSFOG00015021040)	GAL3ST3 (ENSSFOG00015021031)	ENSSFOG00015021013
Asian bonytongue	MODERN SPECIES	23	SMOC2 (ENSSFOG00015002962)	dact2 (ENSSFOG00015002843)	zgc:172136 (ENSSFOG00015002811)	TARBP1 (ENSSFOG00015002660)	ENSSFOG00015026660	SLC35F3 (ENSSFOG00015002610) #7	kcnk1b (ENSSFOG00015002601) #8	ENSSFOG00015002445 #10	agpat4 (ENSSFOG00015002397) #11	ENSSFOG00015002253 #12	ENSSFOG00015002220	PSME4 (ENSSFOG00015002060) #20	GPR75 (ENSSFOG00015002045)	erlec1 (ENSSFOG00015001975) #21	chac2 (ENSSFOG00015001968)	nrxn1b (ENSSFOG00015001893) #22	LHCGR (ENSSFOG00015001859) #23	ENSSFOG00015026862	STON1 (ENSSFOG00015001840) #25	ppp1r21 (ENSSFOG00015001831) #26	FOXN2 (ENSSFOG00015001820)	ENSSFOG00015001698 ##28	msh6 (ENSSFOG00015001648)	KCNK12 (ENSSFOG00015001638) #29	epcam (ENSSFOG00015001618)	ENSSFOG00015001588	ENSSFOG00015024584	calm2a (ENSSFOG00015001500)	TTC7A (ENSSFOG00015001488)	mcfd2 (ENSSFOG00015001471)	ENSSFOG00015001463
Spotted gar	MODERN SPECIES	654	SMOC2 (ENSLOCG00000016200)	dact2 (ENSLOCG00000016207)	ENSLOCG00000016209	TARBP1 (ENSLOCG00000016214)	slc35f3a (ENSLOCG00000016220) #7	kcnk1a (ENSLOCG00000016222) #8	MAP3K4 (ENSLOCG00000016223)	agpat4 (ENSLOCG00000016235) #11	THBS2 (ENSLOCG00000016241) #12	ENSLOCG00000016248	psme4b (ENSLOCG00000016250) #20	GPR75 (ENSLOCG00000017362)	erlec1 (ENSLOCG00000016265) #21	chac2 (ENSLOCG00000016270)	ASB3 (ENSLOCG00000016273)	nrxn1b (ENSLOCG00000016276) #22	fshr (ENSLOCG00000016280)	ENSLOCG00000016282 ##23	STON1 (ENSLOCG00000016284) #25	ppp1r21 (ENSLOCG00000016286) #26	foxn2b (ENSLOCG00000016292)	FBXO11 (ENSLOCG00000016294) ##28	msh6 (ENSLOCG00000016298)	KCNK12 (ENSLOCG00000016299) #29	msh2 (ENSLOCG00000016301)	epcam (ENSLOCG00000016306)	ENSLOCG00000016309	ENSLOCG00000016311	calm2a (ENSLOCG00000016313)	si:ch211-93n23.7 (ENSLOCG00000016315)	TTC7A (ENSLOCG00000016316)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	6	mcph1 (ENSECRG00000012964)	angpt2a (ENSECRG00000013004)	agpat5 (ENSECRG00000013068) ##11	tmem14a (ENSECRG00000013096)	ENSECRG00000013115	CILK1 (ENSECRG00000013210)	fbxo9 (ENSECRG00000013246)	GCM1 (ENSECRG00000013270)	elovl5 (ENSECRG00000013292)	chac2 (ENSECRG00000013318)	ASB3 (ENSECRG00000013333)	ENSECRG00000013346	ENSECRG00000013371	ENSECRG00000013376 #22	nrxn1b (ENSECRG00000013391) #22	ENSECRG00000013409 #22	ENSECRG00000013420
Reedfish	MODERN SPECIES	6	CSMD1 (ENSECRG00000012880)	mcph1 (ENSECRG00000012964)	angpt2a (ENSECRG00000013004)	agpat5 (ENSECRG00000013068) ##11	tmem14a (ENSECRG00000013096)	ENSECRG00000013115	CILK1 (ENSECRG00000013210)	fbxo9 (ENSECRG00000013246)	GCM1 (ENSECRG00000013270)	elovl5 (ENSECRG00000013292)	chac2 (ENSECRG00000013318)	ASB3 (ENSECRG00000013333)	ENSECRG00000013346	ENSECRG00000013371	ENSECRG00000013376 #22	nrxn1b (ENSECRG00000013391) #22	ENSECRG00000013409 #22	ENSECRG00000013420
Reedfish	MODERN SPECIES	6	myom2a (ENSECRG00000012745)	CSMD1 (ENSECRG00000012880)	mcph1 (ENSECRG00000012964)	angpt2a (ENSECRG00000013004)	agpat5 (ENSECRG00000013068) ##11	tmem14a (ENSECRG00000013096)	ENSECRG00000013115	CILK1 (ENSECRG00000013210)	fbxo9 (ENSECRG00000013246)	GCM1 (ENSECRG00000013270)	elovl5 (ENSECRG00000013292)	chac2 (ENSECRG00000013318)	ASB3 (ENSECRG00000013333)	ENSECRG00000013346	ENSECRG00000013371	ENSECRG00000013376 #22	nrxn1b (ENSECRG00000013391) #22	ENSECRG00000013409 #22	ENSECRG00000013420
Sarcopterygii	ANCESTRAL SPECIES	23	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT01020000230346.C
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1060																ENSLACG00000007669 #22	ENSLACG00000012689
Coelacanth	MODERN SPECIES	2710																ENSLACG00000003804 #22
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000157820.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245	ENSGT00950000182980.a.b.b.b	ENSGT00940000167263	ENSGT00940000158638
Amniota	ANCESTRAL SPECIES	12	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Mammalia	ANCESTRAL SPECIES	22	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000177029	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Platypus	MODERN SPECIES	20	CFAP36 (ENSOANG00000042731)	CCDC88A (ENSOANG00000011182)	ENSOANG00000011186	MTIF2 (ENSOANG00000011187)	ENSOANG00000045853	CLHC1 (ENSOANG00000011190)	ENSOANG00000040841	ENSOANG00000011191	ENSOANG00000040330	EML6 (ENSOANG00000011192)	SPTBN1 (ENSOANG00000011193)	ENSOANG00000050395	PSME4 (ENSOANG00000004646) #20	ERLEC1 (ENSOANG00000004645) #21	ENSOANG00000005333	NRXN1 (ENSOANG00000040029) #22	ENSOANG00000014530	FSHR (ENSOANG00000038550)	LHCGR (ENSOANG00000002542) ##23	ENSOANG00000002541 #24	ENSOANG00000045943 #25	PPP1R21 (ENSOANG00000012259) #26	FOXN2 (ENSOANG00000039826)	FBXO11 (ENSOANG00000009864) ##28	MSH6 (ENSOANG00000041939)	MSH2 (ENSOANG00000013431)	ENSOANG00000009081	CALM2 (ENSOANG00000001711)	ENSOANG00000040717	TTC7A (ENSOANG00000002071)	ENSOANG00000036617
Theria	ANCESTRAL SPECIES	13	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Marsupialia	ANCESTRAL SPECIES	12	ENSGT00940000157941	ENSGT00940000162373	ENSGT00390000007971	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000157004.b	ENSGT00620000087966.b	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00390000014237	ENSGT00940000162250	ENSGT00940000157258	ENSGT00950000183148.b.a	ENSGT00940000160483	ENSGT00940000155978.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000162485	ENSGT00940000161083	ENSGT00940000162048	ENSGT00390000018173	ENSGT00390000009268	ENSGT00940000160341	ENSGT00940000171135	ENSGT00940000160310	ENSGT00940000153986.b.b	ENSGT00940000165892	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000161844
Marsupialia_b	ANCESTRAL SPECIES	15	ENSGT00940000157941	ENSGT00940000162373	ENSGT00390000007971	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000157004.b	ENSGT00620000087966.b.i	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00390000014237	ENSGT00940000162250	ENSGT00940000157258	ENSGT00950000183148.b.a	ENSGT00940000160483	ENSGT00940000155978.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000162485	ENSGT00940000161083	ENSGT00940000162048	ENSGT00390000018173	ENSGT00390000009268	ENSGT00940000160341	ENSGT00940000171135	ENSGT00940000160310	ENSGT00940000153986.b.b	ENSGT00940000165892	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000161844
Tasmanian devil	MODERN SPECIES	1	MTIF2 (ENSSHAG00000004418)	ENSSHAG00000026110	CLHC1 (ENSSHAG00000005461)	RTN4 (ENSSHAG00000006351)	ENSSHAG00000008871	EML6 (ENSSHAG00000007063)	SPTBN1 (ENSSHAG00000010204)	ENSSHAG00000021902	ENSSHAG00000021773	PSME4 (ENSSHAG00000014276) #20	GPR75 (ENSSHAG00000028974)	ERLEC1 (ENSSHAG00000014734) #21	CHAC2 (ENSSHAG00000014871)	ASB3 (ENSSHAG00000014938)	ENSSHAG00000002825	NRXN1 (ENSSHAG00000014272) #22	ENSSHAG00000032322	FSHR (ENSSHAG00000012463)	LHCGR (ENSSHAG00000014648) ##23	GTF2A1L (ENSSHAG00000014978) #24	STON1 (ENSSHAG00000001134) #25	PPP1R21 (ENSSHAG00000000153) #26	FOXN2 (ENSSHAG00000001461)	FBXO11 (ENSSHAG00000007704) ##28	MSH6 (ENSSHAG00000008029)	KCNK12 (ENSSHAG00000028144) #29	MSH2 (ENSSHAG00000000468)	EPCAM (ENSSHAG00000027223)	ENSSHAG00000031926	STPG4 (ENSSHAG00000001017)	TTC7A (ENSSHAG00000004355)
Diprotodontia	ANCESTRAL SPECIES	26	ENSGT00940000157941	ENSGT00940000162373	ENSGT00390000007971	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000157004.b	ENSGT00620000087966.b.i	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00390000014237	ENSGT00940000162250	ENSGT00940000157258	ENSGT00950000183148.b.a	ENSGT00940000160483	ENSGT00940000155978.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000162485	ENSGT00940000161083	ENSGT00940000162048	ENSGT00390000018173	ENSGT00390000009268	ENSGT00940000160341	ENSGT00940000171135	ENSGT00940000160310	ENSGT00940000153986.b.b	ENSGT00940000165892	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000161844
Diprotodontia_a	ANCESTRAL SPECIES	15	ENSGT00940000157941	ENSGT00940000162373	ENSGT00390000007971	ENSGT00390000009379	ENSGT01030000234620.a.b.b.a	ENSGT00940000157004.b	ENSGT00620000087966.b.i	ENSGT00940000158249	ENSGT01030000234517.G	ENSGT00390000014237	ENSGT00940000162250	ENSGT00940000157258	ENSGT00950000183148.b.a	ENSGT00940000160483	ENSGT00940000155978.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000162485	ENSGT00940000161083	ENSGT00940000162048	ENSGT00390000018173	ENSGT00390000009268	ENSGT00940000160341	ENSGT00940000171135	ENSGT00940000160310	ENSGT00940000153986.b.b	ENSGT00940000165892	ENSGT00940000160539	ENSGT00950000182985.b.b	ENSGT00940000157074	ENSGT00940000161844
koala	DUPLICATION
koala	MODERN SPECIES	63	CLHC1 (ENSPCIG00000010411)	RTN4 (ENSPCIG00000010419)	EML6 (ENSPCIG00000010427)	ENSPCIG00000010431	ENSPCIG00000010434	SPTBN1 (ENSPCIG00000018457)	ENSPCIG00000026925	ENSPCIG00000026924	ENSPCIG00000026923	PSME4 (ENSPCIG00000008643) #20	GPR75 (ENSPCIG00000008642)	ERLEC1 (ENSPCIG00000007406) #21	CHAC2 (ENSPCIG00000007404)	ASB3 (ENSPCIG00000007187)	ENSPCIG00000024152	ENSPCIG00000016001 #22	ENSPCIG00000008827 #22	ENSPCIG00000035154	ENSPCIG00000012044	ENSPCIG00000022612
koala	MODERN SPECIES	63	RTN4 (ENSPCIG00000010419)	EML6 (ENSPCIG00000010427)	ENSPCIG00000010431	ENSPCIG00000010434	SPTBN1 (ENSPCIG00000018457)	ENSPCIG00000026925	ENSPCIG00000026924	ENSPCIG00000026923	PSME4 (ENSPCIG00000008643) #20	GPR75 (ENSPCIG00000008642)	ERLEC1 (ENSPCIG00000007406) #21	CHAC2 (ENSPCIG00000007404)	ASB3 (ENSPCIG00000007187)	ENSPCIG00000024152	ENSPCIG00000016001 #22	ENSPCIG00000008827 #22	ENSPCIG00000035154	ENSPCIG00000012044	ENSPCIG00000022612
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1017	ENSVURG00010014144	CLHC1 (ENSVURG00010014155)	ENSVURG00010014197	EML6 (ENSVURG00010014289)	SPTBN1 (ENSVURG00010014369)	ENSVURG00010014468	ENSVURG00010014481	ENSVURG00010014502	PSME4 (ENSVURG00010014522) #20	GPR75 (ENSVURG00010014637)	ERLEC1 (ENSVURG00010014651) #21	ASB3 (ENSVURG00010014669)	CHAC2 (ENSVURG00010014690)	ENSVURG00010014704	ENSVURG00010014727 #22	ENSVURG00010014760 #22	ENSVURG00010014807	ENSVURG00010014902	ENSVURG00010014912	FSHR (ENSVURG00010014932)	LHCGR (ENSVURG00010014953) ##23	GTF2A1L (ENSVURG00010014973) #24	STON1 (ENSVURG00010015010) #25	PPP1R21 (ENSVURG00010015035) #26	FOXN2 (ENSVURG00010015092)	FBXO11 (ENSVURG00010015131) ##28	MSH6 (ENSVURG00010015249)	KCNK12 (ENSVURG00010015272) #29	MSH2 (ENSVURG00010015285)	EPCAM (ENSVURG00010015305)	ENSVURG00010015322
Common wonbat	MODERN SPECIES	1017	MTIF2 (ENSVURG00010014139)	ENSVURG00010014144	CLHC1 (ENSVURG00010014155)	ENSVURG00010014197	EML6 (ENSVURG00010014289)	SPTBN1 (ENSVURG00010014369)	ENSVURG00010014468	ENSVURG00010014481	ENSVURG00010014502	PSME4 (ENSVURG00010014522) #20	GPR75 (ENSVURG00010014637)	ERLEC1 (ENSVURG00010014651) #21	ASB3 (ENSVURG00010014669)	CHAC2 (ENSVURG00010014690)	ENSVURG00010014704	ENSVURG00010014727 #22	ENSVURG00010014760 #22	ENSVURG00010014807	ENSVURG00010014902	ENSVURG00010014912	FSHR (ENSVURG00010014932)	LHCGR (ENSVURG00010014953) ##23	GTF2A1L (ENSVURG00010014973) #24	STON1 (ENSVURG00010015010) #25	PPP1R21 (ENSVURG00010015035) #26	FOXN2 (ENSVURG00010015092)	FBXO11 (ENSVURG00010015131) ##28	MSH6 (ENSVURG00010015249)	KCNK12 (ENSVURG00010015272) #29	MSH2 (ENSVURG00010015285)	EPCAM (ENSVURG00010015305)
Wallaby	MODERN SPECIES	8688																NRXN1 (ENSMEUG00000007055) #22
Opossum	DUPLICATION
Opossum	MODERN SPECIES		RTN4 (ENSMODG00000001803)	EML6 (ENSMODG00000001783)	ENSMODG00000037328	SPTBN1 (ENSMODG00000001736)	ENSMODG00000025768	ENSMODG00000045772	ENSMODG00000049670	PSME4 (ENSMODG00000001673) #20	GPR75 (ENSMODG00000023107)	ERLEC1 (ENSMODG00000001631) #21	ASB3 (ENSMODG00000001584)	CHAC2 (ENSMODG00000001593)	ENSMODG00000040115	ENSMODG00000004334	ENSMODG00000041639	ENSMODG00000023106 #22	NRXN1 (ENSMODG00000001531) #22	ENSMODG00000001301	ENSMODG00000047857	ENSMODG00000050387	ENSMODG00000050026	FSHR (ENSMODG00000001267)	LHCGR (ENSMODG00000001240) ##23	ENSMODG00000043681	STON1 (ENSMODG00000001190) #25	PPP1R21 (ENSMODG00000001186) #26	FOXN2 (ENSMODG00000001169)	ENSMODG00000051547	FBXO11 (ENSMODG00000001160) ##28	MSH6 (ENSMODG00000001129)	KCNK12 (ENSMODG00000001106) #29
Opossum	MODERN SPECIES		EML6 (ENSMODG00000001783)	ENSMODG00000037328	SPTBN1 (ENSMODG00000001736)	ENSMODG00000025768	ENSMODG00000045772	ENSMODG00000049670	PSME4 (ENSMODG00000001673) #20	GPR75 (ENSMODG00000023107)	ERLEC1 (ENSMODG00000001631) #21	ASB3 (ENSMODG00000001584)	CHAC2 (ENSMODG00000001593)	ENSMODG00000040115	ENSMODG00000004334	ENSMODG00000041639	ENSMODG00000023106 #22	NRXN1 (ENSMODG00000001531) #22	ENSMODG00000001301	ENSMODG00000047857	ENSMODG00000050387	ENSMODG00000050026	FSHR (ENSMODG00000001267)	LHCGR (ENSMODG00000001240) ##23	ENSMODG00000043681	STON1 (ENSMODG00000001190) #25	PPP1R21 (ENSMODG00000001186) #26	FOXN2 (ENSMODG00000001169)	ENSMODG00000051547	FBXO11 (ENSMODG00000001160) ##28	MSH6 (ENSMODG00000001129)	KCNK12 (ENSMODG00000001106) #29	ENSMODG00000001098
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Atlantogenata	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564.c	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Xenarthra	ANCESTRAL SPECIES	719																ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118
Sloth	MODERN SPECIES	6460																NRXN1 (ENSCHOG00000006151) #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1600												ENSDNOG00000046784	ENSDNOG00000036653 #22	ENSDNOG00000005027 #22	ENSDNOG00000036308	ENSDNOG00000034122 #22	FSHR (ENSDNOG00000042209)	LHCGR (ENSDNOG00000015389) ##23	STON1 (ENSDNOG00000035658) #25	PPP1R21 (ENSDNOG00000000200) #26	FOXN2 (ENSDNOG00000035609)
Armadillo	MODERN SPECIES	1600															ENSDNOG00000046784	ENSDNOG00000036653 #22	ENSDNOG00000005027 #22	ENSDNOG00000036308	ENSDNOG00000034122 #22	FSHR (ENSDNOG00000042209)	LHCGR (ENSDNOG00000015389) ##23	STON1 (ENSDNOG00000035658) #25	PPP1R21 (ENSDNOG00000000200) #26	FOXN2 (ENSDNOG00000035609)
Armadillo	MODERN SPECIES	1600														ENSDNOG00000046784	ENSDNOG00000036653 #22	ENSDNOG00000005027 #22	ENSDNOG00000036308	ENSDNOG00000034122 #22	FSHR (ENSDNOG00000042209)	LHCGR (ENSDNOG00000015389) ##23	STON1 (ENSDNOG00000035658) #25	PPP1R21 (ENSDNOG00000000200) #26	FOXN2 (ENSDNOG00000035609)
Afrotheria	ANCESTRAL SPECIES	39	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564.c	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Afrotheria_a	ANCESTRAL SPECIES	36	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564.c	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Elephant	DUPLICATION
Elephant	MODERN SPECIES	438	CCDC88A (ENSLAFG00000007346)	ENSLAFG00000007344	MTIF2 (ENSLAFG00000007341)	RPS27A (ENSLAFG00000023133)	CLHC1 (ENSLAFG00000016854)	RTN4 (ENSLAFG00000011641)	EML6 (ENSLAFG00000020864)	SPTBN1 (ENSLAFG00000012062)	C2orf73 (ENSLAFG00000029000)	ENSLAFG00000023366	PSME4 (ENSLAFG00000002830) #20	GPR75 (ENSLAFG00000002828)	ERLEC1 (ENSLAFG00000014394) #21	CHAC2 (ENSLAFG00000010523)	ASB3 (ENSLAFG00000010517)	ENSLAFG00000029467 #22	ENSLAFG00000000247 #22	FSHR (ENSLAFG00000017106)	LHCGR (ENSLAFG00000011056) ##23	GTF2A1L (ENSLAFG00000031070) #24	STON1 (ENSLAFG00000013732) #25	PPP1R21 (ENSLAFG00000013728) #26	FOXN2 (ENSLAFG00000012466)	FBXO11 (ENSLAFG00000001595) ##28	MSH6 (ENSLAFG00000001592)	KCNK12 (ENSLAFG00000029102) #29	MSH2 (ENSLAFG00000017344)	EPCAM (ENSLAFG00000006360)	ENSLAFG00000009865	ENSLAFG00000026903	TTC7A (ENSLAFG00000008028)
Elephant	MODERN SPECIES	438	ENSLAFG00000007344	MTIF2 (ENSLAFG00000007341)	RPS27A (ENSLAFG00000023133)	CLHC1 (ENSLAFG00000016854)	RTN4 (ENSLAFG00000011641)	EML6 (ENSLAFG00000020864)	SPTBN1 (ENSLAFG00000012062)	C2orf73 (ENSLAFG00000029000)	ENSLAFG00000023366	PSME4 (ENSLAFG00000002830) #20	GPR75 (ENSLAFG00000002828)	ERLEC1 (ENSLAFG00000014394) #21	CHAC2 (ENSLAFG00000010523)	ASB3 (ENSLAFG00000010517)	ENSLAFG00000029467 #22	ENSLAFG00000000247 #22	FSHR (ENSLAFG00000017106)	LHCGR (ENSLAFG00000011056) ##23	GTF2A1L (ENSLAFG00000031070) #24	STON1 (ENSLAFG00000013732) #25	PPP1R21 (ENSLAFG00000013728) #26	FOXN2 (ENSLAFG00000012466)	FBXO11 (ENSLAFG00000001595) ##28	MSH6 (ENSLAFG00000001592)	KCNK12 (ENSLAFG00000029102) #29	MSH2 (ENSLAFG00000017344)	EPCAM (ENSLAFG00000006360)	ENSLAFG00000009865	ENSLAFG00000026903	TTC7A (ENSLAFG00000008028)	MCFD2 (ENSLAFG00000007876)
Hyrax	MODERN SPECIES	6017																NRXN1 (ENSPCAG00000004815) #22
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	7158																ENSETEG00000019755 #22
Tenrec	MODERN SPECIES	8529																ENSETEG00000004612 #22
Tenrec	MODERN SPECIES	8531																ENSETEG00000018255 #22
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Primates	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	7099																ENSTSYG00000035991 #22
Tarsier	MODERN SPECIES	6040																NRXN1 (ENSTSYG00000000328) #22
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01050000247958	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000154980.u.b	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Mas night monkey	MODERN SPECIES	862														ENSANAG00000034085	ENSANAG00000035517	NRXN1 (ENSANAG00000021872) #22	FSHR (ENSANAG00000008317)	LHCGR (ENSANAG00000001006) ##23	GTF2A1L (ENSANAG00000020689) #24	STON1 (ENSANAG00000025622) #25	PPP1R21 (ENSANAG00000033376) #26	FOXN2 (ENSANAG00000037703)
Cebidae	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01050000247958	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000154980.u.b	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Marmoset	MODERN SPECIES	5	RTN4 (ENSCJAG00000010079)	EML6 (ENSCJAG00000010107)	SPTBN1 (ENSCJAG00000010149)	C2orf73 (ENSCJAG00000063846)	ENSCJAG00000010291	TSPYL6 (ENSCJAG00000063293)	ENSCJAG00000087191	PSME4 (ENSCJAG00000010300) #20	ERLEC1 (ENSCJAG00000010521) #21	ASB3 (ENSCJAG00000010478)	CHAC2 (ENSCJAG00000061560)	ENSCJAG00000048625	ENSCJAG00000047176	ENSCJAG00000074175	ENSCJAG00000047273	NRXN1 (ENSCJAG00000010631) #22	ENSCJAG00000070176	ENSCJAG00000071532	ENSCJAG00000076841	FSHR (ENSCJAG00000010640)	ENSCJAG00000079069	LHCGR (ENSCJAG00000010733) ##23	GTF2A1L (ENSCJAG00000041412) #24	ENSCJAG00000081429	STON1 (ENSCJAG00000010678) #25	PPP1R21 (ENSCJAG00000010751) #26	ENSCJAG00000085607	FOXN2 (ENSCJAG00000010894)	ENSCJAG00000085256	ENSCJAG00000068888	FBXO11 (ENSCJAG00000010907) ##28
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01050000247958	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433.i #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000154980.u.b	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c
Bolivian squirrel monkey	MODERN SPECIES	48	CCDC88A (ENSSBOG00000019821)	ENSSBOG00000035508	MTIF2 (ENSSBOG00000026993)	RPS27A (ENSSBOG00000035895)	CLHC1 (ENSSBOG00000031988)	RTN4 (ENSSBOG00000032024)	EML6 (ENSSBOG00000024484)	SPTBN1 (ENSSBOG00000027662)	C2orf73 (ENSSBOG00000033884)	ACYP2 (ENSSBOG00000030505)	ENSSBOG00000021730 #20	GPR75 (ENSSBOG00000019537)	ERLEC1 (ENSSBOG00000022814) #21	ASB3 (ENSSBOG00000034288)	CHAC2 (ENSSBOG00000030058)	NRXN1 (ENSSBOG00000026811) #22	ENSSBOG00000034030	ENSSBOG00000028134	FSHR (ENSSBOG00000033299)	ENSSBOG00000020971	LHCGR (ENSSBOG00000019216) ##23	GTF2A1L (ENSSBOG00000023060) #24	STON1 (ENSSBOG00000034719) #25	ENSSBOG00000036123 #26	FOXN2 (ENSSBOG00000025167)	ENSSBOG00000032584	FBXO11 (ENSSBOG00000027980) ##28	MSH6 (ENSSBOG00000011609)	KCNK12 (ENSSBOG00000000094) #29	MSH2 (ENSSBOG00000027484)	ENSSBOG00000021194
Capuchin	MODERN SPECIES	209																NRXN1 (ENSCCAG00000035100) #22	ENSCCAG00000036676	FSHR (ENSCCAG00000027381)	LHCGR (ENSCCAG00000021729) ##23	GTF2A1L (ENSCCAG00000025702) #24	STON1 (ENSCCAG00000025357) #25	PPP1R21 (ENSCCAG00000032998) #26	ENSCCAG00000027252	FOXN2 (ENSCCAG00000031206)	ENSCCAG00000035618	FBXO11 (ENSCCAG00000030714) ##28	MSH6 (ENSCCAG00000032532)	ENSCCAG00000025169	ENSCCAG00000035979	KCNK12 (ENSCCAG00000018060) #29	MSH2 (ENSCCAG00000018888)
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Hominidae	ANCESTRAL SPECIES	19	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Gorilla	MODERN SPECIES	14	MTIF2 (ENSGGOG00000007681)	RPS27A (ENSGGOG00000007678)	ENSGGOG00000038513	RTN4 (ENSGGOG00000025845)	EML6 (ENSGGOG00000002787)	SPTBN1 (ENSGGOG00000011605)	ENSGGOG00000039527	C2orf73 (ENSGGOG00000016735)	ACYP2 (ENSGGOG00000011114)	TSPYL6 (ENSGGOG00000003174)	PSME4 (ENSGGOG00000005258) #20	GPR75 (ENSGGOG00000012504)	ERLEC1 (ENSGGOG00000000544) #21	ASB3 (ENSGGOG00000000538)	CHAC2 (ENSGGOG00000039185)	NRXN1 (ENSGGOG00000038758) #22	ENSGGOG00000036155	FSHR (ENSGGOG00000014436)	LHCGR (ENSGGOG00000008461) ##23	ENSGGOG00000012507 #25	PPP1R21 (ENSGGOG00000016362) #26	FOXN2 (ENSGGOG00000037794)	FBXO11 (ENSGGOG00000011606) ##28	MSH6 (ENSGGOG00000021987)	KCNK12 (ENSGGOG00000042739) #29	MSH2 (ENSGGOG00000007088)	EPCAM (ENSGGOG00000022888)	CALM1 (ENSGGOG00000002521)	STPG4 (ENSGGOG00000002525)	TTC7A (ENSGGOG00000009310)	MCFD2 (ENSGGOG00000012267)
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Human	MODERN SPECIES	11	CCDC88A (ENSG00000115355)	MTIF2 (ENSG00000085760)	RPS27A (ENSG00000143947)	CLHC1 (ENSG00000162994)	RTN4 (ENSG00000115310)	EML6 (ENSG00000214595)	SPTBN1 (ENSG00000115306)	C2orf73 (ENSG00000177994)	TSPYL6 (ENSG00000178021)	ACYP2 (ENSG00000170634)	PSME4 (ENSG00000068878) #20	GPR75 (ENSG00000119737)	ERLEC1 (ENSG00000068912) #21	CHAC2 (ENSG00000143942)	ASB3 (ENSG00000115239)	NRXN1 (ENSG00000179915) #22	FSHR (ENSG00000170820)	LHCGR (ENSG00000138039) ##23	GTF2A1L (ENSG00000242441) #24	STON1-GTF2A1L (ENSG00000068781)	STON1 (ENSG00000243244) #25	PPP1R21 (ENSG00000162869) #26	FOXN2 (ENSG00000170802)	FBXO11 (ENSG00000138081) ##28	MSH6 (ENSG00000116062)	KCNK12 (ENSG00000184261) #29	MSH2 (ENSG00000095002)	EPCAM (ENSG00000119888)	CALM2 (ENSG00000143933)	STPG4 (ENSG00000239605)	TTC7A (ENSG00000068724)
Pan	ANCESTRAL SPECIES	17	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00950000182878.b.a.c.a.a.b.i.a	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.r	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Bonobo	MODERN SPECIES	14	RPS27A (ENSPPAG00000034709)	CLHC1 (ENSPPAG00000027781)	ENSPPAG00000030361	ENSPPAG00000039335	EML6 (ENSPPAG00000028028)	ENSPPAG00000020806	SPTBN1 (ENSPPAG00000020369)	ENSPPAG00000022129	TSPYL6 (ENSPPAG00000017725)	ACYP2 (ENSPPAG00000029074)	PSME4 (ENSPPAG00000041872) #20	GPR75 (ENSPPAG00000002907)	ERLEC1 (ENSPPAG00000041587) #21	CHAC2 (ENSPPAG00000028207)	ASB3 (ENSPPAG00000037721)	NRXN1 (ENSPPAG00000040015) #22	ENSPPAG00000019705	FSHR (ENSPPAG00000032263)	LHCGR (ENSPPAG00000031995) ##23	ENSPPAG00000026437 #25	PPP1R21 (ENSPPAG00000030784) #26	FOXN2 (ENSPPAG00000037048)	FBXO11 (ENSPPAG00000033090) ##28	MSH6 (ENSPPAG00000041533)	ENSPPAG00000036758	ENSPPAG00000001152	MSH2 (ENSPPAG00000034124)	EPCAM (ENSPPAG00000029030)	ENSPPAG00000030799	STPG4 (ENSPPAG00000029033)	TTC7A (ENSPPAG00000035331)
Chimpanzee	MODERN SPECIES	14	CCDC88A (ENSPTRG00000011931)	ENSPTRG00000047403	MTIF2 (ENSPTRG00000011929)	RPS27A (ENSPTRG00000011928)	CLHC1 (ENSPTRG00000011927)	RTN4 (ENSPTRG00000011926)	EML6 (ENSPTRG00000034390)	SPTBN1 (ENSPTRG00000011924)	C2AH2orf73 (ENSPTRG00000011923)	TSPYL6 (ENSPTRG00000011922)	ACYP2 (ENSPTRG00000047166)	PSME4 (ENSPTRG00000011920) #20	ERLEC1 (ENSPTRG00000011918) #21	CHAC2 (ENSPTRG00000011917)	ASB3 (ENSPTRG00000011916)	NRXN1 (ENSPTRG00000047199) #22	ENSPTRG00000044663	FSHR (ENSPTRG00000011914)	LHCGR (ENSPTRG00000011912) ##23	STON1 (ENSPTRG00000011911) #25	PPP1R21 (ENSPTRG00000011910) #26	FOXN2 (ENSPTRG00000011908)	FBXO11 (ENSPTRG00000011907) ##28	MSH6 (ENSPTRG00000011906)	ENSPTRG00000040206	ENSPTRG00000045070	KCNK12 (ENSPTRG00000044458) #29	MSH2 (ENSPTRG00000050712)	EPCAM (ENSPTRG00000011902)	CALM2 (ENSPTRG00000011901)	STPG4 (ENSPTRG00000011900)
Orangutan	MODERN SPECIES	14	ENSPPYG00000012402	MTIF2 (ENSPPYG00000012403)	ENSPPYG00000031054	CLHC1 (ENSPPYG00000012404)	RTN4 (ENSPPYG00000012405)	EML6 (ENSPPYG00000012407)	SPTBN1 (ENSPPYG00000012408)	C2orf73 (ENSPPYG00000012409)	ACYP2 (ENSPPYG00000012410)	TSPYL6 (ENSPPYG00000012411)	PSME4 (ENSPPYG00000012412) #20	GPR75 (ENSPPYG00000037778)	ERLEC1 (ENSPPYG00000033647) #21	ASB3 (ENSPPYG00000012415)	CHAC2 (ENSPPYG00000012416)	NRXN1 (ENSPPYG00000012417) #22	FSHR (ENSPPYG00000012418)	LHCGR (ENSPPYG00000012419) ##23	GTF2A1L (ENSPPYG00000033807) #24	STON1 (ENSPPYG00000012420) #25	PPP1R21 (ENSPPYG00000012422) #26	FOXN2 (ENSPPYG00000032110)	FBXO11 (ENSPPYG00000012424) ##28	MSH6 (ENSPPYG00000012425)	KCNK12 (ENSPPYG00000012427) #29	MSH2 (ENSPPYG00000012428)	EPCAM (ENSPPYG00000012429)	CALM2 (ENSPPYG00000012430)	STPG4 (ENSPPYG00000012431)	TTC7A (ENSPPYG00000012432)	MCFD2 (ENSPPYG00000036629)
Gibbon	MODERN SPECIES	4	MTIF2 (ENSNLEG00000009228)	ENSNLEG00000031405	CLHC1 (ENSNLEG00000009217)	RTN4 (ENSNLEG00000009159)	EML6 (ENSNLEG00000028369)	SPTBN1 (ENSNLEG00000009127)	C2orf73 (ENSNLEG00000009117)	ENSNLEG00000034601	ENSNLEG00000033783	PSME4 (ENSNLEG00000008976) #20	GPR75 (ENSNLEG00000035582)	ERLEC1 (ENSNLEG00000008901) #21	CHAC2 (ENSNLEG00000008894)	ASB3 (ENSNLEG00000008845)	ENSNLEG00000028637	NRXN1 (ENSNLEG00000031429) #22	FSHR (ENSNLEG00000008784)	LHCGR (ENSNLEG00000008774) ##23	ENSNLEG00000008717 #25	PPP1R21 (ENSNLEG00000008656) #26	FOXN2 (ENSNLEG00000008649)	MSH6 (ENSNLEG00000008521)	FBXO11 (ENSNLEG00000008539) ##28	ENSNLEG00000029761	MSH2 (ENSNLEG00000008421)	EPCAM (ENSNLEG00000008380)	ENSNLEG00000035354	CRLF3 (ENSNLEG00000005850)	ATAD5 (ENSNLEG00000005853)	TEFM (ENSNLEG00000005875)	ADAP2 (ENSNLEG00000005879)
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00940000154882.eb	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a	ENSGT00390000008095	ENSGT00940000158638
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00940000154882.eb	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a	ENSGT00390000008095	ENSGT00940000158638
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	5	ENSCSAG00000014143	CLHC1 (ENSCSAG00000014126)	ENSCSAG00000014089	ENSCSAG00000014078	EML6 (ENSCSAG00000014003)	SPTBN1 (ENSCSAG00000013879)	ENSCSAG00000013849	TSPYL6 (ENSCSAG00000013844)	ENSCSAG00000013836	PSME4 (ENSCSAG00000013819) #20	GPR75 (ENSCSAG00000019451)	ERLEC1 (ENSCSAG00000013797) #21	CHAC2 (ENSCSAG00000013789)	ASB3 (ENSCSAG00000013775)	NRXN1 (ENSCSAG00000013726) #22	ENSCSAG00000013718 #22	FSHR (ENSCSAG00000013713)	LHCGR (ENSCSAG00000013697) ##23	GTF2A1L (ENSCSAG00000013639) #24	STON1 (ENSCSAG00000013632) #25	ENSCSAG00000013624	PPP1R21 (ENSCSAG00000013613) #26	FOXN2 (ENSCSAG00000013601)	FBXO11 (ENSCSAG00000013597) ##28	MSH6 (ENSCSAG00000013583)	KCNK12 (ENSCSAG00000013576) #29	MSH2 (ENSCSAG00000013571)	EPCAM (ENSCSAG00000013561)	CALM2 (ENSCSAG00000013552)	STPG4 (ENSCSAG00000013545)	TTC7A (ENSCSAG00000013538)
Vervet Monkey	MODERN SPECIES	5	MTIF2 (ENSCSAG00000014153)	ENSCSAG00000014143	CLHC1 (ENSCSAG00000014126)	ENSCSAG00000014089	ENSCSAG00000014078	EML6 (ENSCSAG00000014003)	SPTBN1 (ENSCSAG00000013879)	ENSCSAG00000013849	TSPYL6 (ENSCSAG00000013844)	ENSCSAG00000013836	PSME4 (ENSCSAG00000013819) #20	GPR75 (ENSCSAG00000019451)	ERLEC1 (ENSCSAG00000013797) #21	CHAC2 (ENSCSAG00000013789)	ASB3 (ENSCSAG00000013775)	NRXN1 (ENSCSAG00000013726) #22	ENSCSAG00000013718 #22	FSHR (ENSCSAG00000013713)	LHCGR (ENSCSAG00000013697) ##23	GTF2A1L (ENSCSAG00000013639) #24	STON1 (ENSCSAG00000013632) #25	ENSCSAG00000013624	PPP1R21 (ENSCSAG00000013613) #26	FOXN2 (ENSCSAG00000013601)	FBXO11 (ENSCSAG00000013597) ##28	MSH6 (ENSCSAG00000013583)	KCNK12 (ENSCSAG00000013576) #29	MSH2 (ENSCSAG00000013571)	EPCAM (ENSCSAG00000013561)	CALM2 (ENSCSAG00000013552)	STPG4 (ENSCSAG00000013545)
Cercopithecinae_a	ANCESTRAL SPECIES	107																ENSGT00940000154292.a.b #22	ENSGT00940000163749
Macaca	ANCESTRAL SPECIES	17	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT00940000154882.eb	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00910000148206	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a	ENSGT00390000008095	ENSGT00940000158638
Pig-tailed macaque	MODERN SPECIES	341	ENSMNEG00000038538	MTIF2 (ENSMNEG00000034768)	RPS27A (ENSMNEG00000037303)	CLHC1 (ENSMNEG00000027284)	RTN4 (ENSMNEG00000029510)	EML6 (ENSMNEG00000042682)	SPTBN1 (ENSMNEG00000036219)	C2orf73 (ENSMNEG00000019290)	ENSMNEG00000042704	ACYP2 (ENSMNEG00000042083)	PSME4 (ENSMNEG00000029938) #20	ERLEC1 (ENSMNEG00000025610) #21	CHAC2 (ENSMNEG00000044372)	ASB3 (ENSMNEG00000042717)	ENSMNEG00000033897	NRXN1 (ENSMNEG00000004728) #22	FSHR (ENSMNEG00000035866)	ENSMNEG00000040960	LHCGR (ENSMNEG00000035625) ##23	STON1 (ENSMNEG00000034762) #25	PPP1R21 (ENSMNEG00000033788) #26	ENSMNEG00000023674	FOXN2 (ENSMNEG00000044769)	FBXO11 (ENSMNEG00000029583) ##28	MSH6 (ENSMNEG00000039742)	ENSMNEG00000008190	KCNK12 (ENSMNEG00000008106) #29	MSH2 (ENSMNEG00000036444)	EPCAM (ENSMNEG00000032326)	CALM2 (ENSMNEG00000036829)	ENSMNEG00000027057
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01100000263539.b.b.a.b.a.a	ENSGT00390000005045	ENSGT00940000166162	ENSGT00390000011103.A	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.b.a.a.a.b.a.a.a	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT01100000263508.A.d.e.b.a.c.b.c.a.b.a.a.a.b.a	ENSGT00940000161627.a.a.a.b.b.b.b.a.a.a.a.a.a.a.b.b.a.a.a.b.a.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B.cb
Rhesus	MODERN SPECIES	4	SPTBN1 (ENSMMUG00000013541)	ENSMMUG00000061616	C13H2orf73 (ENSMMUG00000002155)	ACYP2 (ENSMMUG00000002152)	TSPYL6 (ENSMMUG00000002154)	ENSMMUG00000054164	PSME4 (ENSMMUG00000008104) #20	ASB3 (ENSMMUG00000010634)	GPR75 (ENSMMUG00000008105)	ERLEC1 (ENSMMUG00000010640) #21	CHAC2 (ENSMMUG00000010639)	ENSMMUG00000065301	ENSMMUG00000054488	ENSMMUG00000062396	ENSMMUG00000063336	NRXN1 (ENSMMUG00000038179) #22	FSHR (ENSMMUG00000017196)	LHCGR (ENSMMUG00000010368) ##23	STON1 (ENSMMUG00000030838) #25	PPP1R21 (ENSMMUG00000022853) #26	ENSMMUG00000065125	FOXN2 (ENSMMUG00000020677)	FBXO11 (ENSMMUG00000022843) ##28	MSH6 (ENSMMUG00000022842)	KCNK12 (ENSMMUG00000052169) #29	ENSMMUG00000053577	MSH2 (ENSMMUG00000000974)	EPCAM (ENSMMUG00000012390)	ENSMMUG00000017466	STPG4 (ENSMMUG00000058455)	TTC7A (ENSMMUG00000003310)
Crab-eating macaque	MODERN SPECIES	4	SPTBN1 (ENSMFAG00000003466)	ENSMFAG00000058805	C2orf73 (ENSMFAG00000002665)	ACYP2 (ENSMFAG00000045208)	TSPYL6 (ENSMFAG00000054972)	ENSMFAG00000060648	PSME4 (ENSMFAG00000003418) #20	ASB3 (ENSMFAG00000033020)	GPR75 (ENSMFAG00000064656)	ERLEC1 (ENSMFAG00000032604) #21	CHAC2 (ENSMFAG00000040381)	ENSMFAG00000049383	ENSMFAG00000051701	ENSMFAG00000062104	ENSMFAG00000052423	NRXN1 (ENSMFAG00000038443) #22	ENSMFAG00000065365	ENSMFAG00000056014	ENSMFAG00000049764	ENSMFAG00000056240	FSHR (ENSMFAG00000029660)	LHCGR (ENSMFAG00000032456) ##23	ENSMFAG00000057488	GTF2A1L (ENSMFAG00000003441) #24	STON1 (ENSMFAG00000058922) #25	PPP1R21 (ENSMFAG00000032105) #26	FOXN2 (ENSMFAG00000041347)	ENSMFAG00000048932	FBXO11 (ENSMFAG00000030637) ##28	ENSMFAG00000048255	ENSMFAG00000050144
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b.t	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00940000154882.eb	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00910000148206	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00910000144347.w.b.a.b	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a
Olive baboon	MODERN SPECIES	5	RTN4 (ENSPANG00000005683)	EML6 (ENSPANG00000004287)	SPTBN1 (ENSPANG00000000683)	C2orf73 (ENSPANG00000001209)	TSPYL6 (ENSPANG00000038364)	ENSPANG00000048389	ENSPANG00000000195	PSME4 (ENSPANG00000014551) #20	GPR75 (ENSPANG00000049693)	ERLEC1 (ENSPANG00000009778) #21	CHAC2 (ENSPANG00000025448)	ASB3 (ENSPANG00000000697)	ENSPANG00000019787	ENSPANG00000050504	ENSPANG00000041553	NRXN1 (ENSPANG00000035821) #22	ENSPANG00000050757	FSHR (ENSPANG00000020441)	ENSPANG00000037254	LHCGR (ENSPANG00000025379) ##23	GTF2A1L (ENSPANG00000048288) #24	STON1 (ENSPANG00000025377) #25	PPP1R21 (ENSPANG00000019616) #26	SERF2 (ENSPANG00000030418)	FOXN2 (ENSPANG00000013263)	ENSPANG00000046108	ENSPANG00000046063	ENSPANG00000047197	FBXO11 (ENSPANG00000019148) ##28	MSH6 (ENSPANG00000019107)	KCNK12 (ENSPANG00000007920) #29
Cercopithecinae_d	ANCESTRAL SPECIES	79																ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00910000148206	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00910000144347.w.b.a.b	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.q.a
Sooty mangabey	MODERN SPECIES	161																NRXN1 (ENSCATG00000028673) #22	FSHR (ENSCATG00000036507)	ENSCATG00000003181	LHCGR (ENSCATG00000039941) ##23	STON1 (ENSCATG00000000431) #25	PPP1R21 (ENSCATG00000031248) #26	FOXN2 (ENSCATG00000016283)	FBXO11 (ENSCATG00000009908) ##28	ENSCATG00000035720	ENSCATG00000035297	KCNK12 (ENSCATG00000039034) #29	MSH2 (ENSCATG00000040981)	EPCAM (ENSCATG00000015834)	CALM2 (ENSCATG00000033791)	STPG4 (ENSCATG00000032856)	TTC7A (ENSCATG00000040563)
Drill	DUPLICATION
Drill	MODERN SPECIES	829																ENSMLEG00000002945 #22	FSHR (ENSMLEG00000034966)	ENSMLEG00000031411	LHCGR (ENSMLEG00000012058) ##23	ENSMLEG00000033834	GTF2A1L (ENSMLEG00000030439) #24	STON1 (ENSMLEG00000006061) #25	PPP1R21 (ENSMLEG00000035726) #26	ENSMLEG00000001095	FOXN2 (ENSMLEG00000025625)	FBXO11 (ENSMLEG00000034219) ##28	MSH6 (ENSMLEG00000034239)	ENSMLEG00000004077	ENSMLEG00000028389	MSH2 (ENSMLEG00000026537)	EPCAM (ENSMLEG00000031925)
Drill	MODERN SPECIES	1441																NRXN1 (ENSMLEG00000000131) #22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	691															ENSRBIG00000039712 #22	ENSRBIG00000021321 #22	CNTN4 (ENSRBIG00000028848)	IL5RA (ENSRBIG00000034082)
Black snub-nosed monkey	MODERN SPECIES	691																ENSRBIG00000039712 #22	ENSRBIG00000021321 #22	CNTN4 (ENSRBIG00000028848)	IL5RA (ENSRBIG00000034082)
Golden snub-nosed monkey	MODERN SPECIES	1625																NRXN1 (ENSRROG00000029999) #22	ENSRROG00000021609	FSHR (ENSRROG00000040903)	ENSRROG00000039903	ENSRROG00000040642	LHCGR (ENSRROG00000036358) ##23	ENSRROG00000036002	STON1 (ENSRROG00000039823) #25	PPP1R21 (ENSRROG00000027863) #26
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c.g	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Lemuriformes	ANCESTRAL SPECIES	23																ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c.g	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Greater bamboo lemur	DUPLICATION
Greater bamboo lemur	MODERN SPECIES	427			RTN4 (ENSPSMG00000017575)	EML6 (ENSPSMG00000017733)	SPTBN1 (ENSPSMG00000017937)	C2orf73 (ENSPSMG00000018048)	ENSPSMG00000018076	ENSPSMG00000018084	PSME4 (ENSPSMG00000018241) #20	GPR75 (ENSPSMG00000018298)	ERLEC1 (ENSPSMG00000018379) #21	CHAC2 (ENSPSMG00000018434)	ASB3 (ENSPSMG00000018450)	ENSPSMG00000018463	ENSPSMG00000018472	ENSPSMG00000018486 #22	ENSPSMG00000018541 #22
Greater bamboo lemur	MODERN SPECIES	427		RTN4 (ENSPSMG00000017575)	EML6 (ENSPSMG00000017733)	SPTBN1 (ENSPSMG00000017937)	C2orf73 (ENSPSMG00000018048)	ENSPSMG00000018076	ENSPSMG00000018084	PSME4 (ENSPSMG00000018241) #20	GPR75 (ENSPSMG00000018298)	ERLEC1 (ENSPSMG00000018379) #21	CHAC2 (ENSPSMG00000018434)	ASB3 (ENSPSMG00000018450)	ENSPSMG00000018463	ENSPSMG00000018472	ENSPSMG00000018486 #22	ENSPSMG00000018541 #22
Coquerels sifaka	MODERN SPECIES	153																NRXN1 (ENSPCOG00000018138) #22	ENSPCOG00000015113	ENSPCOG00000020487	FSHR (ENSPCOG00000022018)	LHCGR (ENSPCOG00000022481) ##23	GTF2A1L (ENSPCOG00000024995) #24	STON1 (ENSPCOG00000018288) #25	PPP1R21 (ENSPCOG00000021946) #26	FOXN2 (ENSPCOG00000016686)	FBXO11 (ENSPCOG00000017053) ##28	ENSPCOG00000025775	MSH6 (ENSPCOG00000014994)	KCNK12 (ENSPCOG00000026056) #29	MSH2 (ENSPCOG00000013918)	ENSPCOG00000014926	ENSPCOG00000017122
Mouse lemur	MODERN SPECIES	30	ENSMICG00000042030	ENSMICG00000028396	PLEKHB2 (ENSMICG00000031046)	FAM168B (ENSMICG00000009507)	ENSMICG00000009501	ENSMICG00000030156	ENSMICG00000008794	ENSMICG00000042668	ENSMICG00000006310	PTPN18 (ENSMICG00000010256)	IMP4 (ENSMICG00000011797)	CCDC115 (ENSMICG00000029104)	ENSMICG00000006771	ENSMICG00000031591	ENSMICG00000034193	NRXN1 (ENSMICG00000009937) #22	FSHR (ENSMICG00000006050)	LHCGR (ENSMICG00000014907) ##23	GTF2A1L (ENSMICG00000044654) #24	STON1 (ENSMICG00000036882) #25	PPP1R21 (ENSMICG00000014867) #26	FOXN2 (ENSMICG00000028974)	ENSMICG00000045175	FBXO11 (ENSMICG00000010582) ##28	MSH6 (ENSMICG00000029031)	ENSMICG00000038615	KCNK12 (ENSMICG00000044965) #29	MSH2 (ENSMICG00000000152)	EPCAM (ENSMICG00000000151)	ENSMICG00000047661	ENSMICG00000000397
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	139	MTIF2 (ENSOGAG00000004306)	CLHC1 (ENSOGAG00000004301)	ENSOGAG00000002719	EML6 (ENSOGAG00000029470)	SPTBN1 (ENSOGAG00000007249)	ENSOGAG00000024407	C2orf73 (ENSOGAG00000015145)	ENSOGAG00000034440	ENSOGAG00000015142	PSME4 (ENSOGAG00000010343) #20	GPR75 (ENSOGAG00000010342)	ERLEC1 (ENSOGAG00000010335) #21	CHAC2 (ENSOGAG00000010331)	ASB3 (ENSOGAG00000010327)	ENSOGAG00000028211	ENSOGAG00000031790 #22	ENSOGAG00000033422	NRXN1 (ENSOGAG00000006352) #22	FSHR (ENSOGAG00000009698)	LHCGR (ENSOGAG00000011759) ##23	STON1 (ENSOGAG00000011753) #25	PPP1R21 (ENSOGAG00000011747) #26	FOXN2 (ENSOGAG00000011745)	ENSOGAG00000000555	FBXO11 (ENSOGAG00000011985) ##28	MSH6 (ENSOGAG00000032157)	KCNK12 (ENSOGAG00000032494) #29	ENSOGAG00000024744	MSH2 (ENSOGAG00000015506)	ENSOGAG00000015415	ENSOGAG00000008824
Bushbaby	MODERN SPECIES	139	ENSOGAG00000002719	EML6 (ENSOGAG00000029470)	SPTBN1 (ENSOGAG00000007249)	ENSOGAG00000024407	C2orf73 (ENSOGAG00000015145)	ENSOGAG00000034440	ENSOGAG00000015142	PSME4 (ENSOGAG00000010343) #20	GPR75 (ENSOGAG00000010342)	ERLEC1 (ENSOGAG00000010335) #21	CHAC2 (ENSOGAG00000010331)	ASB3 (ENSOGAG00000010327)	ENSOGAG00000028211	ENSOGAG00000031790 #22	ENSOGAG00000033422	NRXN1 (ENSOGAG00000006352) #22	FSHR (ENSOGAG00000009698)	LHCGR (ENSOGAG00000011759) ##23	STON1 (ENSOGAG00000011753) #25	PPP1R21 (ENSOGAG00000011747) #26	FOXN2 (ENSOGAG00000011745)	ENSOGAG00000000555	FBXO11 (ENSOGAG00000011985) ##28	MSH6 (ENSOGAG00000032157)	KCNK12 (ENSOGAG00000032494) #29	ENSOGAG00000024744	MSH2 (ENSOGAG00000015506)	ENSOGAG00000015415	ENSOGAG00000008824	STPG4 (ENSOGAG00000034812)	TTC7A (ENSOGAG00000008818)
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Glires	ANCESTRAL SPECIES	13	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00390000012785	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b.m	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b.s	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00900000143213	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Rabbit	MODERN SPECIES	11	ENSOCUG00000011673	MTIF2 (ENSOCUG00000003617)	ENSOCUG00000003609	RTN4 (ENSOCUG00000012050)	EML6 (ENSOCUG00000012044)	SPTBN1 (ENSOCUG00000005008)	C2orf73 (ENSOCUG00000011269)	ENSOCUG00000015408	ENSOCUG00000027435	ENSOCUG00000037992	ENSOCUG00000004696 #20	GPR75 (ENSOCUG00000000815)	ERLEC1 (ENSOCUG00000014412) #21	ASB3 (ENSOCUG00000013610)	CHAC2 (ENSOCUG00000028058)	NRXN1 (ENSOCUG00000005620) #22	ENSOCUG00000028197	ENSOCUG00000038083	ENSOCUG00000035063	FSHR (ENSOCUG00000011234)	LHCGR (ENSOCUG00000011227) ##23	GTF2A1L (ENSOCUG00000034645) #24	STON1 (ENSOCUG00000006982) #25	PPP1R21 (ENSOCUG00000006967) #26	ENSOCUG00000012631	FOXN2 (ENSOCUG00000009784)	ENSOCUG00000033049	ENSOCUG00000031844	ENSOCUG00000037389	ENSOCUG00000034738	ENSOCUG00000024873
Pika	MODERN SPECIES	3807																NRXN1 (ENSOPRG00000007523) #22
Rodentia	ANCESTRAL SPECIES	15	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Kangaroo rat	MODERN SPECIES	356	Mtif2 (ENSDORG00000006292)	ENSDORG00000006291	Clhc1 (ENSDORG00000006289)	Rtn4 (ENSDORG00000003397)	Eml6 (ENSDORG00000003394)	Sptbn1 (ENSDORG00000000885)	ENSDORG00000014547	Acyp2 (ENSDORG00000007536)	ENSDORG00000010656 #20	ENSDORG00000023265	ENSDORG00000027700 #20	Gpr75 (ENSDORG00000001719)	Erlec1 (ENSDORG00000011020) #21	Chac2 (ENSDORG00000000943)	Asb3 (ENSDORG00000000942)	Nrxn1 (ENSDORG00000008504) #22	Fshr (ENSDORG00000006417)	Lhcgr (ENSDORG00000007024) ##23	Gtf2a1l (ENSDORG00000025799) #24	Ston1 (ENSDORG00000007023) #25	Ppp1r21 (ENSDORG00000007021) #26	Foxn2 (ENSDORG00000007020)	ENSDORG00000029277 ##28	ENSDORG00000012562 ##28	Msh6 (ENSDORG00000012561)	Kcnk12 (ENSDORG00000014373) #29	Msh2 (ENSDORG00000006850)	Epcam (ENSDORG00000006849)	Calm2 (ENSDORG00000010058)	Stpg4 (ENSDORG00000010057)	Ttc7 (ENSDORG00000010053)
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	74										Erlec1 (ENSJJAG00000017554) #21	ENSJJAG00000011848	Psme4 (ENSJJAG00000014002) #20	ENSJJAG00000016709	Chac2 (ENSJJAG00000022588)	Asb3 (ENSJJAG00000011694)	ENSJJAG00000011457 #22	ENSJJAG00000014946 #22	ENSJJAG00000011233	ENSJJAG00000011083	Fshr (ENSJJAG00000015980)	Lhcgr (ENSJJAG00000014188) ##23	Gtf2a1l (ENSJJAG00000016480) #24	Ston1 (ENSJJAG00000017027) #25	Ppp1r21 (ENSJJAG00000021055) #26	ENSJJAG00000000448	Fbxo11 (ENSJJAG00000017285) ##28	Msh6 (ENSJJAG00000009057)	Kcnk12 (ENSJJAG00000024426) #29	Msh2 (ENSJJAG00000012482)	Epcam (ENSJJAG00000010101)	Calm2 (ENSJJAG00000023155)
Lesser Egyptian jerboa	MODERN SPECIES	74									Erlec1 (ENSJJAG00000017554) #21	ENSJJAG00000011848	Psme4 (ENSJJAG00000014002) #20	ENSJJAG00000016709	Chac2 (ENSJJAG00000022588)	Asb3 (ENSJJAG00000011694)	ENSJJAG00000011457 #22	ENSJJAG00000014946 #22	ENSJJAG00000011233	ENSJJAG00000011083	Fshr (ENSJJAG00000015980)	Lhcgr (ENSJJAG00000014188) ##23	Gtf2a1l (ENSJJAG00000016480) #24	Ston1 (ENSJJAG00000017027) #25	Ppp1r21 (ENSJJAG00000021055) #26	ENSJJAG00000000448	Fbxo11 (ENSJJAG00000017285) ##28	Msh6 (ENSJJAG00000009057)	Kcnk12 (ENSJJAG00000024426) #29	Msh2 (ENSJJAG00000012482)	Epcam (ENSJJAG00000010101)	Calm2 (ENSJJAG00000023155)	Stpg4 (ENSJJAG00000016935)
Muroidea	ANCESTRAL SPECIES	21	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	1826	Mtif2 (ENSNGAG00000023658)	Rps27a (ENSNGAG00000019912)	Clhc1 (ENSNGAG00000012024)	ENSNGAG00000014196	ENSNGAG00000020822	Eml6 (ENSNGAG00000023299)	Sptbn1 (ENSNGAG00000021695)	4930505A04Rik (ENSNGAG00000021461)	Acyp2 (ENSNGAG00000024260)	Psme4 (ENSNGAG00000008096) #20	Asb3 (ENSNGAG00000021703)	Erlec1 (ENSNGAG00000003875) #21	ENSNGAG00000007293	Chac2 (ENSNGAG00000021028)	ENSNGAG00000009682	Nrxn1 (ENSNGAG00000017496) #22	Fshr (ENSNGAG00000020967)	Lhcgr (ENSNGAG00000021653) ##23	Gtf2a1l (ENSNGAG00000016933) #24	Ston1 (ENSNGAG00000014271) #25	Ppp1r21 (ENSNGAG00000020731) #26	Foxn2 (ENSNGAG00000015470)	ENSNGAG00000022377	Fbxo11 (ENSNGAG00000017830) ##28	ENSNGAG00000009050	ENSNGAG00000020513	Kcnk12 (ENSNGAG00000011927) #29	Msh2 (ENSNGAG00000020810)	Epcam (ENSNGAG00000012351)	Calm2 (ENSNGAG00000020613)	Stpg4 (ENSNGAG00000023496)
Muroidea_A	ANCESTRAL SPECIES	24															ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Murinae	ANCESTRAL SPECIES	8															ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Mus	ANCESTRAL SPECIES	16													ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Mus_A	ANCESTRAL SPECIES	10													ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.cb	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Mus_B	ANCESTRAL SPECIES	9													ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.cb	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Mus_C	ANCESTRAL SPECIES	9													ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b.cb	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
spretus	MODERN SPECIES	8													Mettl4 (MGP_SPRETEiJ_G0022879)	Adcyap1 (MGP_SPRETEiJ_G0022878)	MGP_SPRETEiJ_G0022877	Nrxn1 (MGP_SPRETEiJ_G0022876) #22	Fshr (MGP_SPRETEiJ_G0022875)	Lhcgr (MGP_SPRETEiJ_G0022874) ##23	Gtf2a1l (MGP_SPRETEiJ_G0022873) #24	Ston1 (MGP_SPRETEiJ_G0022872) #25	Ppp1r21 (MGP_SPRETEiJ_G0022871) #26	Foxn2 (MGP_SPRETEiJ_G0022870)	MGP_SPRETEiJ_G0022869 ##28	Msh6 (MGP_SPRETEiJ_G0022868)	MGP_SPRETEiJ_G0022867	Kcnk12 (MGP_SPRETEiJ_G0022866) #29	Msh2 (MGP_SPRETEiJ_G0022865)	Epcam (MGP_SPRETEiJ_G0022864)	Calm2 (MGP_SPRETEiJ_G0022863)	Stpg4 (MGP_SPRETEiJ_G0022862)	Ttc7 (MGP_SPRETEiJ_G0022861)
Steppe mouse	MODERN SPECIES	3358								ENSMSIG00000030987	ENSMSIG00000030988	Mettl4 (ENSMSIG00000030995)	Adcyap1 (ENSMSIG00000031006)	ENSMSIG00000031009	ENSMSIG00000031011	ENSMSIG00000031014	ENSMSIG00000031015	Nrxn1 (ENSMSIG00000031017) #22	ENSMSIG00000031104	Fshr (ENSMSIG00000031109)	ENSMSIG00000031111	Lhcgr (ENSMSIG00000031112) ##23	Gtf2a1l (ENSMSIG00000000118) #24	Ston1 (ENSMSIG00000000231) #25	Ppp1r21 (ENSMSIG00000000304) #26	Foxn2 (ENSMSIG00000000446)
Mouse	MODERN SPECIES	8														Mettl4 (ENSMUSG00000055660)	Adcyap1 (ENSMUSG00000024256)	Nrxn1 (ENSMUSG00000024109) #22	Gm10184 (ENSMUSG00000066878)	Fshr (ENSMUSG00000032937)	Lhcgr (ENSMUSG00000024107) ##23	Gtf2a1l (ENSMUSG00000024154) #24	Ston1 (ENSMUSG00000033855) #25	Ppp1r21 (ENSMUSG00000034709) #26	Foxn2 (ENSMUSG00000034998)	Fbxo11 (ENSMUSG00000005371) ##28	Msh6 (ENSMUSG00000005370)	Kcnk12 (ENSMUSG00000050138) #29	Msh2 (ENSMUSG00000024151)	Epcam (ENSMUSG00000045394)	Calm2 (ENSMUSG00000036438)	Stpg4 (ENSMUSG00000036557)	Ttc7 (ENSMUSG00000036918)
Ryukyu mouse	MODERN SPECIES	8													Mettl4 (MGP_CAROLIEiJ_G0021963)	Adcyap1 (MGP_CAROLIEiJ_G0021962)	MGP_CAROLIEiJ_G0021961	Nrxn1 (MGP_CAROLIEiJ_G0021959) #22	Fshr (MGP_CAROLIEiJ_G0021958)	Lhcgr (MGP_CAROLIEiJ_G0021957) ##23	Gtf2a1l (MGP_CAROLIEiJ_G0021956) #24	MGP_CAROLIEiJ_G0021955 #25	Ppp1r21 (MGP_CAROLIEiJ_G0021954) #26	Foxn2 (MGP_CAROLIEiJ_G0021953)	Fbxo11 (MGP_CAROLIEiJ_G0021952) ##28	Msh6 (MGP_CAROLIEiJ_G0021951)	Kcnk12 (MGP_CAROLIEiJ_G0021950) #29	Msh2 (MGP_CAROLIEiJ_G0021949)	Epcam (MGP_CAROLIEiJ_G0021948)	Calm2 (MGP_CAROLIEiJ_G0021947)	Stpg4 (MGP_CAROLIEiJ_G0021946)	Ttc7 (MGP_CAROLIEiJ_G0021945)	Mcfd2 (MGP_CAROLIEiJ_G0021944)
Shrew mouse	MODERN SPECIES	9													Mettl4 (MGP_PahariEiJ_G0020952)	Adcyap1 (MGP_PahariEiJ_G0020951)	MGP_PahariEiJ_G0020950	Nrxn1 (MGP_PahariEiJ_G0020949) #22	Fshr (MGP_PahariEiJ_G0020948)	Lhcgr (MGP_PahariEiJ_G0020947) ##23	MGP_PahariEiJ_G0020946 #24	Ston1 (MGP_PahariEiJ_G0020945) #25	Ppp1r21 (MGP_PahariEiJ_G0020944) #26	Foxn2 (MGP_PahariEiJ_G0020943)	Fbxo11 (MGP_PahariEiJ_G0020942) ##28	Msh6 (MGP_PahariEiJ_G0020941)	Kcnk12 (MGP_PahariEiJ_G0020940) #29	Msh2 (MGP_PahariEiJ_G0020939)	Epcam (MGP_PahariEiJ_G0020938)	Calm2 (MGP_PahariEiJ_G0020937)	Stpg4 (MGP_PahariEiJ_G0020936)	Ttc7 (MGP_PahariEiJ_G0020935)	Mcfd2 (MGP_PahariEiJ_G0020934)
Rat	MODERN SPECIES	16								AABR07064590.1 (ENSRNOG00000050408)	Cwf19l2 (ENSRNOG00000024372)	Alkbh8 (ENSRNOG00000024525)	Mtm1 (ENSRNOG00000002516)	AABR07063126.1 (ENSRNOG00000002495)	Crnkl1-ps1 (ENSRNOG00000040045)	ENSRNOG00000067942	AABR07063082.1 (ENSRNOG00000031342)	Nrxn1 (ENSRNOG00000050220) #22	ENSRNOG00000069544	ENSRNOG00000070393	ENSRNOG00000070800	Fshr (ENSRNOG00000016783)	Lhcgr (ENSRNOG00000016712) ##23	Gtf2a1l (ENSRNOG00000016703) #24	Ston1 (ENSRNOG00000016688) #25	Ppp1r21 (ENSRNOG00000016528) #26	Foxn2 (ENSRNOG00000040110)	H2az1-ps2 (ENSRNOG00000031564)	Fbxo11 (ENSRNOG00000016396) ##28	Msh6 (ENSRNOG00000016134)	Kcnk12 (ENSRNOG00000016110) #29	Msh2 (ENSRNOG00000015796)	Epcam (ENSRNOG00000015667)
Cricetidae	ANCESTRAL SPECIES	24															ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000183069.b.b.a.b.c.a.b.b	ENSGT00940000163012.g	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00530000063460.B	ENSGT00940000154595.n	ENSGT00940000158995	ENSGT00940000161659	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a.h.k	ENSGT00390000006553	ENSGT00730000111436	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	730	Actl9 (ENSMAUG00000004280)	Adamts10 (ENSMAUG00000012826)	Myo1f (ENSMAUG00000002414)	Zfp414 (ENSMAUG00000015759)	Pram1 (ENSMAUG00000013923)	Hnrnpm (ENSMAUG00000017476)	Marchf2 (ENSMAUG00000014822)	Rab11b (ENSMAUG00000021579)	Angptl4 (ENSMAUG00000014673)	Kank3 (ENSMAUG00000009653)	Rps28 (ENSMAUG00000014417)	Ndufa7 (ENSMAUG00000011679)	Cd320 (ENSMAUG00000011368)	ENSMAUG00000003574	ENSMAUG00000018269	ENSMAUG00000011549 #22	ENSMAUG00000009040 #22	ENSMAUG00000016648 #22	ENSMAUG00000010504	ENSMAUG00000010637	ENSMAUG00000003588 #22
Golden Hamster	MODERN SPECIES	730	Hnrnpm (ENSMAUG00000017476)	Marchf2 (ENSMAUG00000014822)	Rab11b (ENSMAUG00000021579)	Angptl4 (ENSMAUG00000014673)	Kank3 (ENSMAUG00000009653)	Rps28 (ENSMAUG00000014417)	Ndufa7 (ENSMAUG00000011679)	Cd320 (ENSMAUG00000011368)	ENSMAUG00000003574	ENSMAUG00000018269	ENSMAUG00000011549 #22	ENSMAUG00000009040 #22	ENSMAUG00000016648 #22	ENSMAUG00000010504	ENSMAUG00000010637	ENSMAUG00000003588 #22
Golden Hamster	MODERN SPECIES	730	Myo1f (ENSMAUG00000002414)	Zfp414 (ENSMAUG00000015759)	Pram1 (ENSMAUG00000013923)	Hnrnpm (ENSMAUG00000017476)	Marchf2 (ENSMAUG00000014822)	Rab11b (ENSMAUG00000021579)	Angptl4 (ENSMAUG00000014673)	Kank3 (ENSMAUG00000009653)	Rps28 (ENSMAUG00000014417)	Ndufa7 (ENSMAUG00000011679)	Cd320 (ENSMAUG00000011368)	ENSMAUG00000003574	ENSMAUG00000018269	ENSMAUG00000011549 #22	ENSMAUG00000009040 #22	ENSMAUG00000016648 #22	ENSMAUG00000010504	ENSMAUG00000010637	ENSMAUG00000003588 #22
Golden Hamster	MODERN SPECIES	730	Adamts10 (ENSMAUG00000012826)	Myo1f (ENSMAUG00000002414)	Zfp414 (ENSMAUG00000015759)	Pram1 (ENSMAUG00000013923)	Hnrnpm (ENSMAUG00000017476)	Marchf2 (ENSMAUG00000014822)	Rab11b (ENSMAUG00000021579)	Angptl4 (ENSMAUG00000014673)	Kank3 (ENSMAUG00000009653)	Rps28 (ENSMAUG00000014417)	Ndufa7 (ENSMAUG00000011679)	Cd320 (ENSMAUG00000011368)	ENSMAUG00000003574	ENSMAUG00000018269	ENSMAUG00000011549 #22	ENSMAUG00000009040 #22	ENSMAUG00000016648 #22	ENSMAUG00000010504	ENSMAUG00000010637	ENSMAUG00000003588 #22
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001012021	Marchf2 (ENSCGRG00001014555)	Rab11b (ENSCGRG00001013827)	Angptl4 (ENSCGRG00001012499)	Kank3 (ENSCGRG00001009872)	Rps28 (ENSCGRG00001022084)	Ndufa7 (ENSCGRG00001021655)	Cd320 (ENSCGRG00001016305)	ENSCGRG00001014808	ENSCGRG00001014569	ENSCGRG00001012809 #22	Nrxn1 (ENSCGRG00001024322) #22	ENSCGRG00001007291	ENSCGRG00001005913	ENSCGRG00001003809	ENSCGRG00001010857 #22	Fshr (ENSCGRG00001014045)	ENSCGRG00001013067	Lhcgr (ENSCGRG00001019339) ##23	Gtf2a1l (ENSCGRG00001015738) #24	Ston1 (ENSCGRG00001014467) #25	Ppp1r21 (ENSCGRG00001012297) #26	Foxn2 (ENSCGRG00001011928)	Fbxo11 (ENSCGRG00001010880) ##28	Msh6 (ENSCGRG00001006510)	Kcnk12 (ENSCGRG00001024728) #29	Msh2 (ENSCGRG00001024165)	Epcam (ENSCGRG00001015160)	ENSCGRG00001012854	Stpg4 (ENSCGRG00001014859)	Ttc7 (ENSCGRG00001024318)
Chinese hamster chok1gshd	MODERN SPECIES	2	Actl9 (ENSCGRG00001008637)	Adamts10 (ENSCGRG00001018715)	Myo1f (ENSCGRG00001014051)	Zfp414 (ENSCGRG00001019364)	Pram1 (ENSCGRG00001016954)	ENSCGRG00001012021	Marchf2 (ENSCGRG00001014555)	Rab11b (ENSCGRG00001013827)	Angptl4 (ENSCGRG00001012499)	Kank3 (ENSCGRG00001009872)	Rps28 (ENSCGRG00001022084)	Ndufa7 (ENSCGRG00001021655)	Cd320 (ENSCGRG00001016305)	ENSCGRG00001014808	ENSCGRG00001014569	ENSCGRG00001012809 #22	Nrxn1 (ENSCGRG00001024322) #22	ENSCGRG00001007291	ENSCGRG00001005913	ENSCGRG00001003809	ENSCGRG00001010857 #22	Fshr (ENSCGRG00001014045)	ENSCGRG00001013067	Lhcgr (ENSCGRG00001019339) ##23	Gtf2a1l (ENSCGRG00001015738) #24	Ston1 (ENSCGRG00001014467) #25	Ppp1r21 (ENSCGRG00001012297) #26	Foxn2 (ENSCGRG00001011928)	Fbxo11 (ENSCGRG00001010880) ##28	Msh6 (ENSCGRG00001006510)	Kcnk12 (ENSCGRG00001024728) #29
Chinese hamster chok1gshd	MODERN SPECIES	2	Adamts10 (ENSCGRG00001018715)	Myo1f (ENSCGRG00001014051)	Zfp414 (ENSCGRG00001019364)	Pram1 (ENSCGRG00001016954)	ENSCGRG00001012021	Marchf2 (ENSCGRG00001014555)	Rab11b (ENSCGRG00001013827)	Angptl4 (ENSCGRG00001012499)	Kank3 (ENSCGRG00001009872)	Rps28 (ENSCGRG00001022084)	Ndufa7 (ENSCGRG00001021655)	Cd320 (ENSCGRG00001016305)	ENSCGRG00001014808	ENSCGRG00001014569	ENSCGRG00001012809 #22	Nrxn1 (ENSCGRG00001024322) #22	ENSCGRG00001007291	ENSCGRG00001005913	ENSCGRG00001003809	ENSCGRG00001010857 #22	Fshr (ENSCGRG00001014045)	ENSCGRG00001013067	Lhcgr (ENSCGRG00001019339) ##23	Gtf2a1l (ENSCGRG00001015738) #24	Ston1 (ENSCGRG00001014467) #25	Ppp1r21 (ENSCGRG00001012297) #26	Foxn2 (ENSCGRG00001011928)	Fbxo11 (ENSCGRG00001010880) ##28	Msh6 (ENSCGRG00001006510)	Kcnk12 (ENSCGRG00001024728) #29	Msh2 (ENSCGRG00001024165)
Cricetidae_B	ANCESTRAL SPECIES	104															ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00900000143213
Northern American deer mouse	MODERN SPECIES	14	Zfp811 (ENSPEMG00000009779)	Zfp871 (ENSPEMG00000012037)	ENSPEMG00000002401	Cyp4f15 (ENSPEMG00000017659)	Cyp4f40 (ENSPEMG00000001335)	ENSPEMG00000026298	ENSPEMG00000016364	ENSPEMG00000013083	Cyp4f17 (ENSPEMG00000016853)	Cyp4f39 (ENSPEMG00000009938)	ENSPEMG00000027394	ENSPEMG00000031405	ENSPEMG00000002220	ENSPEMG00000020979	ENSPEMG00000027751	Nrxn1 (ENSPEMG00000023385) #22	ENSPEMG00000030210	Fshr (ENSPEMG00000023546)	ENSPEMG00000031007	Lhcgr (ENSPEMG00000020668) ##23	Gtf2a1l (ENSPEMG00000020907) #24	Ston1 (ENSPEMG00000022164) #25	ENSPEMG00000030792	ENSPEMG00000028108	Foxn2 (ENSPEMG00000021326)	Fbxo11 (ENSPEMG00000020489) ##28	Msh6 (ENSPEMG00000013591)	Kcnk12 (ENSPEMG00000024468) #29	Msh2 (ENSPEMG00000015577)	Calm2 (ENSPEMG00000010363)	Stpg4 (ENSPEMG00000020631)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	3	Abi1 (ENSMOCG00000020584)	Pdss1 (ENSMOCG00000020894)	Apbb1ip (ENSMOCG00000012582)	Gad2 (ENSMOCG00000012215)	ENSMOCG00000001785	ENSMOCG00000017133	ENSMOCG00000013399	Gpr158 (ENSMOCG00000014104)	Thnsl1 (ENSMOCG00000008966)	Enkur (ENSMOCG00000021111)	ENSMOCG00000017062	ENSMOCG00000002476	Arhgap21 (ENSMOCG00000002205)	ENSMOCG00000022264	ENSMOCG00000009508	ENSMOCG00000018863 #22	ENSMOCG00000012986	Fshr (ENSMOCG00000001235)	Lhcgr (ENSMOCG00000015497) ##23	Gtf2a1l (ENSMOCG00000001793) #24	Ston1 (ENSMOCG00000021349) #25	Ppp1r21 (ENSMOCG00000014427) #26	Foxn2 (ENSMOCG00000003766)	Fbxo11 (ENSMOCG00000018879) ##28	Msh6 (ENSMOCG00000017271)	Kcnk12 (ENSMOCG00000017929) #29	ENSMOCG00000001820	Msh2 (ENSMOCG00000003615)	Epcam (ENSMOCG00000017750)	Calm2 (ENSMOCG00000007388)	Stpg4 (ENSMOCG00000006592)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	353	Ephx3 (ENSMOCG00000016735)	Notch3 (ENSMOCG00000001344)	Ilvbl (ENSMOCG00000007265)	Syde1 (ENSMOCG00000010233)	Casp14 (ENSMOCG00000013844)	Ccdc105 (ENSMOCG00000013529)	Slc1a6 (ENSMOCG00000020405)	Or7a36 (ENSMOCG00000002619)	ENSMOCG00000008222	2610008E11Rik (ENSMOCG00000008949)	ENSMOCG00000017805	ENSMOCG00000020687	ENSMOCG00000021154	ENSMOCG00000007015	ENSMOCG00000011467	ENSMOCG00000011429 #22	ENSMOCG00000014683 #22	ENSMOCG00000021185	Zfp36l2 (ENSMOCG00000011066)	Haao (ENSMOCG00000015453)	Mta3 (ENSMOCG00000017936)	Kcng3 (ENSMOCG00000011778)	Cox7a2l (ENSMOCG00000012418)	Eml4 (ENSMOCG00000020764)	Pkdcc (ENSMOCG00000002662)	Slc8a1 (ENSMOCG00000017983)	ENSMOCG00000000636	Thumpd2 (ENSMOCG00000018094)	Tmem178 (ENSMOCG00000003539)	Map4k3 (ENSMOCG00000009231)	Cdkl4 (ENSMOCG00000001506)
Prairie vole	MODERN SPECIES	353	Notch3 (ENSMOCG00000001344)	Ilvbl (ENSMOCG00000007265)	Syde1 (ENSMOCG00000010233)	Casp14 (ENSMOCG00000013844)	Ccdc105 (ENSMOCG00000013529)	Slc1a6 (ENSMOCG00000020405)	Or7a36 (ENSMOCG00000002619)	ENSMOCG00000008222	2610008E11Rik (ENSMOCG00000008949)	ENSMOCG00000017805	ENSMOCG00000020687	ENSMOCG00000021154	ENSMOCG00000007015	ENSMOCG00000011467	ENSMOCG00000011429 #22	ENSMOCG00000014683 #22	ENSMOCG00000021185	Zfp36l2 (ENSMOCG00000011066)	Haao (ENSMOCG00000015453)	Mta3 (ENSMOCG00000017936)	Kcng3 (ENSMOCG00000011778)	Cox7a2l (ENSMOCG00000012418)	Eml4 (ENSMOCG00000020764)	Pkdcc (ENSMOCG00000002662)	Slc8a1 (ENSMOCG00000017983)	ENSMOCG00000000636	Thumpd2 (ENSMOCG00000018094)	Tmem178 (ENSMOCG00000003539)	Map4k3 (ENSMOCG00000009231)	Cdkl4 (ENSMOCG00000001506)	Sos1 (ENSMOCG00000008243)
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Eurasian red squirrel	MODERN SPECIES	5	CLHC1 (ENSSVLG00005016556)	ENSSVLG00005016681	RTN4 (ENSSVLG00005016782)	EML6 (ENSSVLG00005017004)	SPTBN1 (ENSSVLG00005017516)	C2orf73 (ENSSVLG00005017963)	ACYP2 (ENSSVLG00005018034)	ENSSVLG00005018110	PSME4 (ENSSVLG00005018188) #20	ASB3 (ENSSVLG00005018629)	ERLEC1 (ENSSVLG00005018796) #21	CHAC2 (ENSSVLG00005018909)	ENSSVLG00005018947	ENSSVLG00005018991	ENSSVLG00005019024	NRXN1 (ENSSVLG00005019798) #22	ENSSVLG00005021489	FSHR (ENSSVLG00005021556)	LHCGR (ENSSVLG00005021740) ##23	GTF2A1L (ENSSVLG00005022039) #24	STON1 (ENSSVLG00005022192) #25	ENSSVLG00005022227	PPP1R21 (ENSSVLG00005022287) #26	ENSSVLG00005022380	FOXN2 (ENSSVLG00005022414)	FBXO11 (ENSSVLG00005022435) ##28	MSH6 (ENSSVLG00005022532)	KCNK12 (ENSSVLG00005022712) #29	ENSSVLG00005022741	ENSSVLG00005022780	ENSSVLG00005022866
Marmotini	ANCESTRAL SPECIES	14	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Alpin marmot	MODERN SPECIES	6	EML6 (ENSMMMG00000007601)	SPTBN1 (ENSMMMG00000007693)	ENSMMMG00000007907	C2orf73 (ENSMMMG00000007917)	ENSMMMG00000007921	ENSMMMG00000007923	ENSMMMG00000007926	ENSMMMG00000007931	PSME4 (ENSMMMG00000007941) #20	ENSMMMG00000008010	ASB3 (ENSMMMG00000008012)	ERLEC1 (ENSMMMG00000008054) #21	CHAC2 (ENSMMMG00000008065)	ENSMMMG00000008091	ENSMMMG00000008163	NRXN1 (ENSMMMG00000008244) #22	ENSMMMG00000009117	FSHR (ENSMMMG00000009138)	LHCGR (ENSMMMG00000009175) ##23	GTF2A1L (ENSMMMG00000009226) #24	STON1 (ENSMMMG00000009238) #25	PPP1R21 (ENSMMMG00000009249) #26	FOXN2 (ENSMMMG00000009297)	FBXO11 (ENSMMMG00000009335) ##28	MSH6 (ENSMMMG00000009374)	MSH2 (ENSMMMG00000009438)	EPCAM (ENSMMMG00000009917)	CALM2 (ENSMMMG00000009965)	STPG4 (ENSMMMG00000009975)	TTC7A (ENSMMMG00000010016)	ENSMMMG00000010047
Marmotini_b	ANCESTRAL SPECIES	95															ENSGT00860000135827	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Arctic ground squirrel	MODERN SPECIES	38																NRXN1 (ENSUPAG00010019885) #22	FSHR (ENSUPAG00010020467)	LHCGR (ENSUPAG00010020477) ##23	GTF2A1L (ENSUPAG00010020487) #24	STON1 (ENSUPAG00010020489) #25	PPP1R21 (ENSUPAG00010020493) #26	FOXN2 (ENSUPAG00010020506)	FBXO11 (ENSUPAG00010020510) ##28	MSH6 (ENSUPAG00010020546)	KCNK12 (ENSUPAG00010020558) #29	MSH2 (ENSUPAG00010020566)	EPCAM (ENSUPAG00010020586)	ENSUPAG00010020594	STPG4 (ENSUPAG00010020605)	TTC7A (ENSUPAG00010020623)	MCFD2 (ENSUPAG00010020633)
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	108												ENSSTOG00000029377	ENSSTOG00000031131 #22	ENSSTOG00000029552 #22	ENSSTOG00000000682 #22	ENSSTOG00000002126 #22	FSHR (ENSSTOG00000010396)	LHCGR (ENSSTOG00000023268) ##23	GTF2A1L (ENSSTOG00000005847) #24	STON1 (ENSSTOG00000033757) #25	PPP1R21 (ENSSTOG00000005801) #26	FOXN2 (ENSSTOG00000000862)	FBXO11 (ENSSTOG00000004759) ##28	MSH6 (ENSSTOG00000022429)	KCNK12 (ENSSTOG00000026767) #29	MSH2 (ENSSTOG00000007110)	EPCAM (ENSSTOG00000008631)	CALM2 (ENSSTOG00000021814)	STPG4 (ENSSTOG00000016339)	TTC7A (ENSSTOG00000022551)	MCFD2 (ENSSTOG00000003692)
Squirrel	DUPLICATION
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	108															ENSSTOG00000029377	ENSSTOG00000031131 #22	ENSSTOG00000029552 #22	ENSSTOG00000000682 #22	ENSSTOG00000002126 #22	FSHR (ENSSTOG00000010396)	LHCGR (ENSSTOG00000023268) ##23	GTF2A1L (ENSSTOG00000005847) #24	STON1 (ENSSTOG00000033757) #25	PPP1R21 (ENSSTOG00000005801) #26	FOXN2 (ENSSTOG00000000862)	FBXO11 (ENSSTOG00000004759) ##28	MSH6 (ENSSTOG00000022429)	KCNK12 (ENSSTOG00000026767) #29	MSH2 (ENSSTOG00000007110)	EPCAM (ENSSTOG00000008631)	CALM2 (ENSSTOG00000021814)
Squirrel	MODERN SPECIES	108														ENSSTOG00000029377	ENSSTOG00000031131 #22	ENSSTOG00000029552 #22	ENSSTOG00000000682 #22	ENSSTOG00000002126 #22	FSHR (ENSSTOG00000010396)	LHCGR (ENSSTOG00000023268) ##23	GTF2A1L (ENSSTOG00000005847) #24	STON1 (ENSSTOG00000033757) #25	PPP1R21 (ENSSTOG00000005801) #26	FOXN2 (ENSSTOG00000000862)	FBXO11 (ENSSTOG00000004759) ##28	MSH6 (ENSSTOG00000022429)	KCNK12 (ENSSTOG00000026767) #29	MSH2 (ENSSTOG00000007110)	EPCAM (ENSSTOG00000008631)	CALM2 (ENSSTOG00000021814)	STPG4 (ENSSTOG00000016339)
Squirrel	MODERN SPECIES	108													ENSSTOG00000029377	ENSSTOG00000031131 #22	ENSSTOG00000029552 #22	ENSSTOG00000000682 #22	ENSSTOG00000002126 #22	FSHR (ENSSTOG00000010396)	LHCGR (ENSSTOG00000023268) ##23	GTF2A1L (ENSSTOG00000005847) #24	STON1 (ENSSTOG00000033757) #25	PPP1R21 (ENSSTOG00000005801) #26	FOXN2 (ENSSTOG00000000862)	FBXO11 (ENSSTOG00000004759) ##28	MSH6 (ENSSTOG00000022429)	KCNK12 (ENSSTOG00000026767) #29	MSH2 (ENSSTOG00000007110)	EPCAM (ENSSTOG00000008631)	CALM2 (ENSSTOG00000021814)	STPG4 (ENSSTOG00000016339)	TTC7A (ENSSTOG00000022551)
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Naked mole-rat female	MODERN SPECIES	23	ENSHGLG00000038413	ENSHGLG00000032708	ENSHGLG00000042061	ENSHGLG00000021136	ENSHGLG00000036087	ENSHGLG00000033420	ENSHGLG00000019292 #20	GPR75 (ENSHGLG00000019285)	ERLEC1 (ENSHGLG00000019605) #21	CHAC2 (ENSHGLG00000019608)	ENSHGLG00000019602	ENSHGLG00000019613	ENSHGLG00000020954	ENSHGLG00000020828	ENSHGLG00000047180	ENSHGLG00000015032 #22	ENSHGLG00000049442	FSHR (ENSHGLG00000049867)	LHCGR (ENSHGLG00000045687) ##23	STON1 (ENSHGLG00000014159) #25	PPP1R21 (ENSHGLG00000016153) #26	FOXN2 (ENSHGLG00000041365)	FBXO11 (ENSHGLG00000014524) ##28	ENSHGLG00000014228	MSH6 (ENSHGLG00000014307)	ENSHGLG00000018270	KCNK12 (ENSHGLG00000044659) #29	MSH2 (ENSHGLG00000013169)	EPCAM (ENSHGLG00000017588)	ENSHGLG00000041487	CALM2 (ENSHGLG00000017572)
Hystricomorpha_a	ANCESTRAL SPECIES	31						ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433.n #20	ENSGT00990000214317	ENSGT00390000011433.m #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Guinea pig	DUPLICATION
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	18	TUBB4B (ENSCPOG00000031843)	FAM166A (ENSCPOG00000009796)	STPG3 (ENSCPOG00000015441)	NELFB (ENSCPOG00000015444)	TOR4A (ENSCPOG00000037931)	NOXA1 (ENSCPOG00000009860)	ENTPD8 (ENSCPOG00000009866)	NSMF (ENSCPOG00000000564)	PNPLA7 (ENSCPOG00000000566)	MRPL41 (ENSCPOG00000032480)	DPH7 (ENSCPOG00000000569)	ZMYND19 (ENSCPOG00000025655)	ARRDC1 (ENSCPOG00000020757)	ENSCPOG00000006808	CACNA1B (ENSCPOG00000004438)	ENSCPOG00000020392 #22	ENSCPOG00000040367 #22	ENSCPOG00000003316 #22	ENSCPOG00000036335	FSHR (ENSCPOG00000011752)	LHCGR (ENSCPOG00000015685) ##23	GTF2A1L (ENSCPOG00000033931) #24	STON1 (ENSCPOG00000015684) #25	PPP1R21 (ENSCPOG00000009740) #26	FOXN2 (ENSCPOG00000034360)	FBXO11 (ENSCPOG00000000933) ##28	MSH6 (ENSCPOG00000000931)	KCNK12 (ENSCPOG00000035370) #29	MSH2 (ENSCPOG00000014297)	EPCAM (ENSCPOG00000003748)	ENSCPOG00000012181
Guinea pig	MODERN SPECIES	18	STPG3 (ENSCPOG00000015441)	NELFB (ENSCPOG00000015444)	TOR4A (ENSCPOG00000037931)	NOXA1 (ENSCPOG00000009860)	ENTPD8 (ENSCPOG00000009866)	NSMF (ENSCPOG00000000564)	PNPLA7 (ENSCPOG00000000566)	MRPL41 (ENSCPOG00000032480)	DPH7 (ENSCPOG00000000569)	ZMYND19 (ENSCPOG00000025655)	ARRDC1 (ENSCPOG00000020757)	ENSCPOG00000006808	CACNA1B (ENSCPOG00000004438)	ENSCPOG00000020392 #22	ENSCPOG00000040367 #22	ENSCPOG00000003316 #22	ENSCPOG00000036335	FSHR (ENSCPOG00000011752)	LHCGR (ENSCPOG00000015685) ##23	GTF2A1L (ENSCPOG00000033931) #24	STON1 (ENSCPOG00000015684) #25	PPP1R21 (ENSCPOG00000009740) #26	FOXN2 (ENSCPOG00000034360)	FBXO11 (ENSCPOG00000000933) ##28	MSH6 (ENSCPOG00000000931)	KCNK12 (ENSCPOG00000035370) #29	MSH2 (ENSCPOG00000014297)	EPCAM (ENSCPOG00000003748)	ENSCPOG00000012181	STPG4 (ENSCPOG00000020691)	TTC7A (ENSCPOG00000012175)
Guinea pig	MODERN SPECIES	18	FAM166A (ENSCPOG00000009796)	STPG3 (ENSCPOG00000015441)	NELFB (ENSCPOG00000015444)	TOR4A (ENSCPOG00000037931)	NOXA1 (ENSCPOG00000009860)	ENTPD8 (ENSCPOG00000009866)	NSMF (ENSCPOG00000000564)	PNPLA7 (ENSCPOG00000000566)	MRPL41 (ENSCPOG00000032480)	DPH7 (ENSCPOG00000000569)	ZMYND19 (ENSCPOG00000025655)	ARRDC1 (ENSCPOG00000020757)	ENSCPOG00000006808	CACNA1B (ENSCPOG00000004438)	ENSCPOG00000020392 #22	ENSCPOG00000040367 #22	ENSCPOG00000003316 #22	ENSCPOG00000036335	FSHR (ENSCPOG00000011752)	LHCGR (ENSCPOG00000015685) ##23	GTF2A1L (ENSCPOG00000033931) #24	STON1 (ENSCPOG00000015684) #25	PPP1R21 (ENSCPOG00000009740) #26	FOXN2 (ENSCPOG00000034360)	FBXO11 (ENSCPOG00000000933) ##28	MSH6 (ENSCPOG00000000931)	KCNK12 (ENSCPOG00000035370) #29	MSH2 (ENSCPOG00000014297)	EPCAM (ENSCPOG00000003748)	ENSCPOG00000012181	STPG4 (ENSCPOG00000020691)
Hystricomorpha_b	ANCESTRAL SPECIES	26						ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433.n #20	ENSGT00390000007723	ENSGT00990000214317	ENSGT00390000011433.m #20	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000164310.e	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Degu	DUPLICATION
Degu	MODERN SPECIES	215	SPTBN1 (ENSODEG00000000573)	C2orf73 (ENSODEG00000000597)	ENSODEG00000000606	ENSODEG00000018665	ENSODEG00000001189 #20	ENSODEG00000001210	ENSODEG00000001226 #20	ERLEC1 (ENSODEG00000001247) #21	CHAC2 (ENSODEG00000001289)	ASB3 (ENSODEG00000001318)	ENSODEG00000001331	ENSODEG00000001344	ENSODEG00000018662	ENSODEG00000001366	ENSODEG00000001376 #22	ENSODEG00000001393 #22	ENSODEG00000001439
Degu	MODERN SPECIES	215		SPTBN1 (ENSODEG00000000573)	C2orf73 (ENSODEG00000000597)	ENSODEG00000000606	ENSODEG00000018665	ENSODEG00000001189 #20	ENSODEG00000001210	ENSODEG00000001226 #20	ERLEC1 (ENSODEG00000001247) #21	CHAC2 (ENSODEG00000001289)	ASB3 (ENSODEG00000001318)	ENSODEG00000001331	ENSODEG00000001344	ENSODEG00000018662	ENSODEG00000001366	ENSODEG00000001376 #22	ENSODEG00000001393 #22	ENSODEG00000001439
Long-tailed chinchilla	MODERN SPECIES	148							SPTBN1 (ENSCLAG00000008903)	C2orf73 (ENSCLAG00000008798)	ENSCLAG00000008761	PSME4 (ENSCLAG00000007934) #20	GPR75 (ENSCLAG00000017751)	ERLEC1 (ENSCLAG00000005600) #21	CHAC2 (ENSCLAG00000005517)	ENSCLAG00000017744	ASB3 (ENSCLAG00000005325)	NRXN1 (ENSCLAG00000004141) #22	FSHR (ENSCLAG00000003730)	LHCGR (ENSCLAG00000003661) ##23	GTF2A1L (ENSCLAG00000003604) #24	STON1 (ENSCLAG00000003568) #25	PPP1R21 (ENSCLAG00000003493) #26	FOXN2 (ENSCLAG00000003421)	FBXO11 (ENSCLAG00000003238) ##28	MSH6 (ENSCLAG00000003134)	KCNK12 (ENSCLAG00000003092) #29	MSH2 (ENSCLAG00000003069)	EPCAM (ENSCLAG00000003018)	ENSCLAG00000007800	STPG4 (ENSCLAG00000007677)	TTC7A (ENSCLAG00000007527)	MCFD2 (ENSCLAG00000009903)
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	4251																ENSTBEG00000012265 #22
Tree shrew	MODERN SPECIES	5241																ENSTBEG00000000977 #22
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Megabat	MODERN SPECIES	2590																NRXN1 (ENSPVAG00000009788) #22
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Microbat	MODERN SPECIES	943	ENSMLUG00000017067	ENSMLUG00000029449	CLHC1 (ENSMLUG00000016016)	RTN4 (ENSMLUG00000009620)	EML6 (ENSMLUG00000009594)	SPTBN1 (ENSMLUG00000008419)	C2orf73 (ENSMLUG00000003463)	ENSMLUG00000003460	ENSMLUG00000025512	PSME4 (ENSMLUG00000014052) #20	GPR75 (ENSMLUG00000014051)	ERLEC1 (ENSMLUG00000016924) #21	CHAC2 (ENSMLUG00000029712)	ASB3 (ENSMLUG00000011108)	ENSMLUG00000029070	NRXN1 (ENSMLUG00000007944) #22	ENSMLUG00000007921	ENSMLUG00000026006	FSHR (ENSMLUG00000007827)	LHCGR (ENSMLUG00000011758) ##23	STON1 (ENSMLUG00000011744) #25	PPP1R21 (ENSMLUG00000017568) #26	FOXN2 (ENSMLUG00000017567)	FBXO11 (ENSMLUG00000008808) ##28	MSH6 (ENSMLUG00000008787)	MSH2 (ENSMLUG00000011007)	KCNK12 (ENSMLUG00000011046) #29	EPCAM (ENSMLUG00000003363)	CALM2 (ENSMLUG00000029016)	TTC7A (ENSMLUG00000004211)	MCFD2 (ENSMLUG00000004210)
Greater horseshoe bat	MODERN SPECIES	4	MTIF2 (ENSRFEG00010012133)	ENSRFEG00010012185	CLHC1 (ENSRFEG00010012230)	RTN4 (ENSRFEG00010012390)	EML6 (ENSRFEG00010012563)	ENSRFEG00010012608	SPTBN1 (ENSRFEG00010012649)	C2orf73 (ENSRFEG00010013217)	ENSRFEG00010013322	PSME4 (ENSRFEG00010013444) #20	ASB3 (ENSRFEG00010013559)	ERLEC1 (ENSRFEG00010013813) #21	CHAC2 (ENSRFEG00010014005)	ENSRFEG00010014062	ENSRFEG00010014116	NRXN1 (ENSRFEG00010014266) #22	FSHR (ENSRFEG00010016578)	LHCGR (ENSRFEG00010016889) ##23	GTF2A1L (ENSRFEG00010016969) #24	STON1 (ENSRFEG00010017218) #25	PPP1R21 (ENSRFEG00010017268) #26	FOXN2 (ENSRFEG00010017393)	FBXO11 (ENSRFEG00010005278) ##28	MSH6 (ENSRFEG00010005308)	KCNK12 (ENSRFEG00010005334) #29	MSH2 (ENSRFEG00010005356)	EPCAM (ENSRFEG00010005391)	CALM2 (ENSRFEG00010005417)	ENSRFEG00010005450	STPG4 (ENSRFEG00010005468)	TTC7A (ENSRFEG00010005555)
Equus	ANCESTRAL SPECIES	7	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b	ENSGT01050000244924.a.a.b.eb	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Horse	MODERN SPECIES	6	RPS27A (ENSECAG00000018773)	CLHC1 (ENSECAG00000022052)	ENSECAG00000059492	RTN4 (ENSECAG00000011846)	ENSECAG00000054633	EML6 (ENSECAG00000022521)	SPTBN1 (ENSECAG00000014446)	ACYP2 (ENSECAG00000012531)	PSME4 (ENSECAG00000013197) #20	GPR75 (ENSECAG00000003142)	ERLEC1 (ENSECAG00000012769) #21	ASB3 (ENSECAG00000022145)	CHAC2 (ENSECAG00000020243)	ENSECAG00000053538	ENSECAG00000041125	NRXN1 (ENSECAG00000009451) #22	ENSECAG00000032180	FSHR (ENSECAG00000012303)	LHCGR (ENSECAG00000020677) ##23	GTF2A1L (ENSECAG00000012644) #24	STON1 (ENSECAG00000030329) #25	PPP1R21 (ENSECAG00000020797) #26	FOXN2 (ENSECAG00000008390)	FBXO11 (ENSECAG00000009988) ##28	MSH6 (ENSECAG00000005949)	KCNK12 (ENSECAG00000040062) #29	MSH2 (ENSECAG00000010315)	EPCAM (ENSECAG00000024630)	STPG4 (ENSECAG00000008396)	ENSECAG00000020990	TTC7A (ENSECAG00000018622)
Donkey	MODERN SPECIES	26	ENSEASG00005038395	CLHC1 (ENSEASG00005000691)	ENSEASG00005034230	ENSEASG00005000618	EML6 (ENSEASG00005000215)	SPTBN1 (ENSEASG00005000175)	C2orf73 (ENSEASG00005027364)	ENSEASG00005030051	PSME4 (ENSEASG00005000053) #20	GPR75 (ENSEASG00005025186)	ERLEC1 (ENSEASG00005000017) #21	ENSEASG00005024339	ENSEASG00005015153	ENSEASG00005037238	ENSEASG00005002596	ENSEASG00005002590 #22	ENSEASG00005002618	ENSEASG00005026193	FSHR (ENSEASG00005002622)	LHCGR (ENSEASG00005002627) ##23	GTF2A1L (ENSEASG00005002630) #24	STON1 (ENSEASG00005002632) #25	PPP1R21 (ENSEASG00005002636) #26	FOXN2 (ENSEASG00005002642)	FBXO11 (ENSEASG00005002648) ##28	MSH6 (ENSEASG00005002660)	KCNK12 (ENSEASG00005031477) #29	MSH2 (ENSEASG00005002682)	EPCAM (ENSEASG00005003002)	CALM2 (ENSEASG00005032373)	STPG4 (ENSEASG00005003021)
Carnivora	ANCESTRAL SPECIES	19	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Caniformia	ANCESTRAL SPECIES	18	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Mustelinae	ANCESTRAL SPECIES	86																ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00390000017614.j	ENSGT00390000017614.i	ENSGT00390000016769
Ferret	DUPLICATION
Ferret	MODERN SPECIES	199																ENSMPUG00000010902 #22	ENSMPUG00000010905 #22	ENSMPUG00000010913	ENSMPUG00000010917	FSHR (ENSMPUG00000010921)	LHCGR (ENSMPUG00000010934) ##23	STON1 (ENSMPUG00000010943) #25	PPP1R21 (ENSMPUG00000010980) #26	FOXN2 (ENSMPUG00000010993)	FBXO11 (ENSMPUG00000011000) ##28	MSH6 (ENSMPUG00000011012)	KCNK12 (ENSMPUG00000011022) #29	MSH2 (ENSMPUG00000011028)	EPCAM (ENSMPUG00000011040)	LYG1 (ENSMPUG00000011050)	LYG2 (ENSMPUG00000011054)
Ferret	MODERN SPECIES	199															ENSMPUG00000010902 #22	ENSMPUG00000010905 #22	ENSMPUG00000010913	ENSMPUG00000010917	FSHR (ENSMPUG00000010921)	LHCGR (ENSMPUG00000010934) ##23	STON1 (ENSMPUG00000010943) #25	PPP1R21 (ENSMPUG00000010980) #26	FOXN2 (ENSMPUG00000010993)	FBXO11 (ENSMPUG00000011000) ##28	MSH6 (ENSMPUG00000011012)	KCNK12 (ENSMPUG00000011022) #29	MSH2 (ENSMPUG00000011028)	EPCAM (ENSMPUG00000011040)	LYG1 (ENSMPUG00000011050)	LYG2 (ENSMPUG00000011054)	MRPL30 (ENSMPUG00000011085)
American mink	MODERN SPECIES	276																NRXN1 (ENSNVIG00000020188) #22
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Giant Panda	MODERN SPECIES	14	CCDC88A (ENSAMEG00000003927)	ENSAMEG00000003982	ENSAMEG00000030167	MTIF2 (ENSAMEG00000003983)	ENSAMEG00000004017	CLHC1 (ENSAMEG00000004031)	RTN4 (ENSAMEG00000004062)	EML6 (ENSAMEG00000004086)	SPTBN1 (ENSAMEG00000004191)	C2orf73 (ENSAMEG00000030021)	ENSAMEG00000029360	PSME4 (ENSAMEG00000004483) #20	ERLEC1 (ENSAMEG00000004550) #21	CHAC2 (ENSAMEG00000004580)	ASB3 (ENSAMEG00000004591)	NRXN1 (ENSAMEG00000013969) #22	FSHR (ENSAMEG00000000237)	ENSAMEG00000006534 ##23	GTF2A1L (ENSAMEG00000006495) #24	STON1 (ENSAMEG00000023761) #25	PPP1R21 (ENSAMEG00000006444) #26	FOXN2 (ENSAMEG00000006413)	FBXO11 (ENSAMEG00000006341) ##28	MSH6 (ENSAMEG00000006324)	KCNK12 (ENSAMEG00000006310) #29	MSH2 (ENSAMEG00000006254)	ENSAMEG00000006223	CALM2 (ENSAMEG00000026131)	STPG4 (ENSAMEG00000006199)	TTC7A (ENSAMEG00000006106)	ENSAMEG00000006097
Ursus	ANCESTRAL SPECIES	20	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	223	ENSUMAG00000016811	MTIF2 (ENSUMAG00000016809)	ENSUMAG00000016807	CLHC1 (ENSUMAG00000016805)	RTN4 (ENSUMAG00000016787)	EML6 (ENSUMAG00000016770)	SPTBN1 (ENSUMAG00000014109)	C2orf73 (ENSUMAG00000013819)	ENSUMAG00000013813	PSME4 (ENSUMAG00000013777) #20	GPR75 (ENSUMAG00000013744)	ERLEC1 (ENSUMAG00000013734) #21	CHAC2 (ENSUMAG00000013731)	ASB3 (ENSUMAG00000013726)	NRXN1 (ENSUMAG00000013682) #22	ENSUMAG00000013659 #22	FSHR (ENSUMAG00000013633)	LHCGR (ENSUMAG00000013617) ##23	GTF2A1L (ENSUMAG00000013612) #24	STON1 (ENSUMAG00000013608) #25	PPP1R21 (ENSUMAG00000013439) #26	ENSUMAG00000013431	FOXN2 (ENSUMAG00000013426)	FBXO11 (ENSUMAG00000013221) ##28	MSH6 (ENSUMAG00000013204)	MSH2 (ENSUMAG00000013174)	EPCAM (ENSUMAG00000013164)	CALM2 (ENSUMAG00000013143)	STPG4 (ENSUMAG00000013136)	TTC7A (ENSUMAG00000013027)	ENSUMAG00000013016
Polar bear	MODERN SPECIES	223	CCDC88A (ENSUMAG00000017062)	ENSUMAG00000016811	MTIF2 (ENSUMAG00000016809)	ENSUMAG00000016807	CLHC1 (ENSUMAG00000016805)	RTN4 (ENSUMAG00000016787)	EML6 (ENSUMAG00000016770)	SPTBN1 (ENSUMAG00000014109)	C2orf73 (ENSUMAG00000013819)	ENSUMAG00000013813	PSME4 (ENSUMAG00000013777) #20	GPR75 (ENSUMAG00000013744)	ERLEC1 (ENSUMAG00000013734) #21	CHAC2 (ENSUMAG00000013731)	ASB3 (ENSUMAG00000013726)	NRXN1 (ENSUMAG00000013682) #22	ENSUMAG00000013659 #22	FSHR (ENSUMAG00000013633)	LHCGR (ENSUMAG00000013617) ##23	GTF2A1L (ENSUMAG00000013612) #24	STON1 (ENSUMAG00000013608) #25	PPP1R21 (ENSUMAG00000013439) #26	ENSUMAG00000013431	FOXN2 (ENSUMAG00000013426)	FBXO11 (ENSUMAG00000013221) ##28	MSH6 (ENSUMAG00000013204)	MSH2 (ENSUMAG00000013174)	EPCAM (ENSUMAG00000013164)	CALM2 (ENSUMAG00000013143)	STPG4 (ENSUMAG00000013136)	TTC7A (ENSUMAG00000013027)
American black bear	DUPLICATION
American black bear	MODERN SPECIES	6535																ENSUAMG00000009808 #22
American black bear	MODERN SPECIES	1456																ENSUAMG00000022787 #22
American black bear	MODERN SPECIES	2448																ENSUAMG00000025024 #22
Canidae	ANCESTRAL SPECIES	10	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000153425.a.b	ENSGT00950000185692	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00390000013951.db.b	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Red fox	DUPLICATION
Red fox	MODERN SPECIES	10	RPS27A (ENSVVUG00000009891)	CLHC1 (ENSVVUG00000009864)	ENSVVUG00000009844	ENSVVUG00000009841	RTN4 (ENSVVUG00000009833)	EML6 (ENSVVUG00000009773)	SPTBN1 (ENSVVUG00000007915)	C2orf73 (ENSVVUG00000007804)	ENSVVUG00000007794	PSME4 (ENSVVUG00000007068) #20	ERLEC1 (ENSVVUG00000006195) #21	CHAC2 (ENSVVUG00000006167)	ASB3 (ENSVVUG00000006060)	ENSVVUG00000005943 #22	ENSVVUG00000005903 #22	NRXN1 (ENSVVUG00000005879) #22	FSHR (ENSVVUG00000005808)	LHCGR (ENSVVUG00000005772) ##23	GTF2A1L (ENSVVUG00000005754) #24	ENSVVUG00000005753	STON1 (ENSVVUG00000005749) #25	PPP1R21 (ENSVVUG00000005690) #26	FOXN2 (ENSVVUG00000005687)	ENSVVUG00000005684	FBXO11 (ENSVVUG00000005674) ##28	MSH6 (ENSVVUG00000005670)	KCNK12 (ENSVVUG00000005655) #29	MSH2 (ENSVVUG00000005653)	ENSVVUG00000005641	TTC7A (ENSVVUG00000005602)	MCFD2 (ENSVVUG00000005570)
Red fox	MODERN SPECIES	10	MTIF2 (ENSVVUG00000009923)	RPS27A (ENSVVUG00000009891)	CLHC1 (ENSVVUG00000009864)	ENSVVUG00000009844	ENSVVUG00000009841	RTN4 (ENSVVUG00000009833)	EML6 (ENSVVUG00000009773)	SPTBN1 (ENSVVUG00000007915)	C2orf73 (ENSVVUG00000007804)	ENSVVUG00000007794	PSME4 (ENSVVUG00000007068) #20	ERLEC1 (ENSVVUG00000006195) #21	CHAC2 (ENSVVUG00000006167)	ASB3 (ENSVVUG00000006060)	ENSVVUG00000005943 #22	ENSVVUG00000005903 #22	NRXN1 (ENSVVUG00000005879) #22	FSHR (ENSVVUG00000005808)	LHCGR (ENSVVUG00000005772) ##23	GTF2A1L (ENSVVUG00000005754) #24	ENSVVUG00000005753	STON1 (ENSVVUG00000005749) #25	PPP1R21 (ENSVVUG00000005690) #26	FOXN2 (ENSVVUG00000005687)	ENSVVUG00000005684	FBXO11 (ENSVVUG00000005674) ##28	MSH6 (ENSVVUG00000005670)	KCNK12 (ENSVVUG00000005655) #29	MSH2 (ENSVVUG00000005653)	ENSVVUG00000005641	TTC7A (ENSVVUG00000005602)
Red fox	MODERN SPECIES	10	ENSVVUG00000009931	MTIF2 (ENSVVUG00000009923)	RPS27A (ENSVVUG00000009891)	CLHC1 (ENSVVUG00000009864)	ENSVVUG00000009844	ENSVVUG00000009841	RTN4 (ENSVVUG00000009833)	EML6 (ENSVVUG00000009773)	SPTBN1 (ENSVVUG00000007915)	C2orf73 (ENSVVUG00000007804)	ENSVVUG00000007794	PSME4 (ENSVVUG00000007068) #20	ERLEC1 (ENSVVUG00000006195) #21	CHAC2 (ENSVVUG00000006167)	ASB3 (ENSVVUG00000006060)	ENSVVUG00000005943 #22	ENSVVUG00000005903 #22	NRXN1 (ENSVVUG00000005879) #22	FSHR (ENSVVUG00000005808)	LHCGR (ENSVVUG00000005772) ##23	GTF2A1L (ENSVVUG00000005754) #24	ENSVVUG00000005753	STON1 (ENSVVUG00000005749) #25	PPP1R21 (ENSVVUG00000005690) #26	FOXN2 (ENSVVUG00000005687)	ENSVVUG00000005684	FBXO11 (ENSVVUG00000005674) ##28	MSH6 (ENSVVUG00000005670)	KCNK12 (ENSVVUG00000005655) #29	MSH2 (ENSVVUG00000005653)	ENSVVUG00000005641
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000153425.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00390000013951.db.b	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Dog	MODERN SPECIES	1	RPS27A (ENSCAFG00845010792)	CLHC1 (ENSCAFG00845010710)	ENSCAFG00845010592	RTN4 (ENSCAFG00845010381)	EML6 (ENSCAFG00845010062)	SPTBN1 (ENSCAFG00845009556)	ENSCAFG00845009286	ENSCAFG00845009195	PSME4 (ENSCAFG00845008342) #20	GPR75 (ENSCAFG00845008125)	ERLEC1 (ENSCAFG00845007879) #21	CHAC2 (ENSCAFG00845007798)	ASB3 (ENSCAFG00845007688)	ENSCAFG00845007623	ENSCAFG00845007601	NRXN1 (ENSCAFG00845006920) #22	FSHR (ENSCAFG00845006515)	LHCGR (ENSCAFG00845006174) ##23	GTF2A1L (ENSCAFG00845006018) #24	STON1 (ENSCAFG00845005959) #25	STON1 (ENSCAFG00845005733) #26	FOXN2 (ENSCAFG00845005620)	LSM3 (ENSCAFG00845005601)	FBXO11 (ENSCAFG00845005550) ##28	MSH6 (ENSCAFG00845005493)	ENSCAFG00845005461	KCNK12 (ENSCAFG00845005433) #29	MSH2 (ENSCAFG00845005364)	EPCAM (ENSCAFG00845005300)	CALM2 (ENSCAFG00845005256)	CALM2 (ENSCAFG00845005229)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	307	CLHC1 (ENSCAFG00020026536)	ENSCAFG00020026533	RTN4 (ENSCAFG00020026516)	EML6 (ENSCAFG00020026514)	SPTBN1 (ENSCAFG00020026512)	ENSCAFG00020026510	C2orf73 (ENSCAFG00020026508)	ENSCAFG00020026506	ENSCAFG00020026500 #20	ENSCAFG00020026491 #20	GPR75 (ENSCAFG00020026490)	ERLEC1 (ENSCAFG00020026488) #21	CHAC2 (ENSCAFG00020026485)	ASB3 (ENSCAFG00020026483)	ENSCAFG00020026478 #22	ENSCAFG00020026469 #22	ENSCAFG00020026463	ENSCAFG00020026461	FSHR (ENSCAFG00020026460)	LHCGR (ENSCAFG00020026458) ##23	GTF2A1L (ENSCAFG00020026457) #24	STON1 (ENSCAFG00020026456) #25	PPP1R21 (ENSCAFG00020026455) #26	FOXN2 (ENSCAFG00020026454)	ENSCAFG00020026452	FBXO11 (ENSCAFG00020026423) ##28	MSH6 (ENSCAFG00020026419)	ENSCAFG00020026417	KCNK12 (ENSCAFG00020026415) #29	MSH2 (ENSCAFG00020026414)	EPCAM (ENSCAFG00020026413)
Dingo	MODERN SPECIES	307	ENSCAFG00020026537	CLHC1 (ENSCAFG00020026536)	ENSCAFG00020026533	RTN4 (ENSCAFG00020026516)	EML6 (ENSCAFG00020026514)	SPTBN1 (ENSCAFG00020026512)	ENSCAFG00020026510	C2orf73 (ENSCAFG00020026508)	ENSCAFG00020026506	ENSCAFG00020026500 #20	ENSCAFG00020026491 #20	GPR75 (ENSCAFG00020026490)	ERLEC1 (ENSCAFG00020026488) #21	CHAC2 (ENSCAFG00020026485)	ASB3 (ENSCAFG00020026483)	ENSCAFG00020026478 #22	ENSCAFG00020026469 #22	ENSCAFG00020026463	ENSCAFG00020026461	FSHR (ENSCAFG00020026460)	LHCGR (ENSCAFG00020026458) ##23	GTF2A1L (ENSCAFG00020026457) #24	STON1 (ENSCAFG00020026456) #25	PPP1R21 (ENSCAFG00020026455) #26	FOXN2 (ENSCAFG00020026454)	ENSCAFG00020026452	FBXO11 (ENSCAFG00020026423) ##28	MSH6 (ENSCAFG00020026419)	ENSCAFG00020026417	KCNK12 (ENSCAFG00020026415) #29	MSH2 (ENSCAFG00020026414)
Felidae	ANCESTRAL SPECIES	3	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000010721.a.a.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c.a	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Cat	MODERN SPECIES	2	RPS27A (ENSFCAG00000023939)	CLHC1 (ENSFCAG00000024453)	ENSFCAG00000030730	ENSFCAG00000049785	RTN4 (ENSFCAG00000029439)	EML6 (ENSFCAG00000018728)	SPTBN1 (ENSFCAG00000010592)	ENSFCAG00000023425	CA3H2orf73 (ENSFCAG00000022329)	ACYP2 (ENSFCAG00000042187)	PSME4 (ENSFCAG00000027866) #20	GPR75 (ENSFCAG00000013366)	ERLEC1 (ENSFCAG00000013362) #21	CHAC2 (ENSFCAG00000022762)	ASB3 (ENSFCAG00000022032)	NRXN1 (ENSFCAG00000009031) #22	FSHR (ENSFCAG00000001215)	LHCGR (ENSFCAG00000009256) ##23	GTF2A1L (ENSFCAG00000023357) #24	STON1 (ENSFCAG00000009254) #25	PPP1R21 (ENSFCAG00000009251) #26	FOXN2 (ENSFCAG00000039724)	FBXO11 (ENSFCAG00000007090) ##28	MSH6 (ENSFCAG00000007089)	KCNK12 (ENSFCAG00000044950) #29	MSH2 (ENSFCAG00000013448)	EPCAM (ENSFCAG00000013445)	CALM2 (ENSFCAG00000029141)	STPG4 (ENSFCAG00000006968)	TTC7A (ENSFCAG00000004961)	ENSFCAG00000034741
Panthera	ANCESTRAL SPECIES	2	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000010721.a.a.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c.a	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000010721.a.a.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c.a	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
lion	MODERN SPECIES	3	CFAP36 (ENSPLOG00000001719)	CCDC88A (ENSPLOG00000001817)	ENSPLOG00000001882	MTIF2 (ENSPLOG00000001898)	ENSPLOG00000001924	CLHC1 (ENSPLOG00000001957)	RTN4 (ENSPLOG00000002045)	EML6 (ENSPLOG00000002127)	SPTBN1 (ENSPLOG00000002269)	C2orf73 (ENSPLOG00000002370)	ENSPLOG00000002388	PSME4 (ENSPLOG00000002477) #20	ASB3 (ENSPLOG00000002638)	ERLEC1 (ENSPLOG00000002723) #21	CHAC2 (ENSPLOG00000002842)	NRXN1 (ENSPLOG00000003208) #22	FSHR (ENSPLOG00000003577)	LHCGR (ENSPLOG00000003642) ##23	GTF2A1L (ENSPLOG00000003710) #24	STON1 (ENSPLOG00000003756) #25	PPP1R21 (ENSPLOG00000003826) #26	FOXN2 (ENSPLOG00000003886)	ENSPLOG00000003898	FBXO11 (ENSPLOG00000003916) ##28	MSH6 (ENSPLOG00000003957)	KCNK12 (ENSPLOG00000004005) #29	MSH2 (ENSPLOG00000004013)	EPCAM (ENSPLOG00000004026)	STPG4 (ENSPLOG00000004056)	TTC7A (ENSPLOG00000004103)	ENSPLOG00000004135
leopard	MODERN SPECIES		MTIF2 (ENSPPRG00000004891)	RPS27A (ENSPPRG00000005461)	CLHC1 (ENSPPRG00000005593)	ENSPPRG00000005724	RTN4 (ENSPPRG00000006496)	EML6 (ENSPPRG00000007012)	SPTBN1 (ENSPPRG00000008098)	ENSPPRG00000008260	C2orf73 (ENSPPRG00000008427)	ENSPPRG00000008622	PSME4 (ENSPPRG00000009001) #20	GPR75 (ENSPPRG00000020956)	ERLEC1 (ENSPPRG00000009477) #21	CHAC2 (ENSPPRG00000010860)	ASB3 (ENSPPRG00000010985)	ENSPPRG00000011052 #22	ENSPPRG00000011805	FSHR (ENSPPRG00000011890)	LHCGR (ENSPPRG00000012894) ##23	GTF2A1L (ENSPPRG00000013037) #24	STON1 (ENSPPRG00000014094) #25	PPP1R21 (ENSPPRG00000016006) #26	FOXN2 (ENSPPRG00000017153)	FBXO11 (ENSPPRG00000019934) ##28	MSH6 (ENSPPRG00000021052)	KCNK12 (ENSPPRG00000021838) #29	ENSPPRG00000022363	MSH2 (ENSPPRG00000022862)	ENSPPRG00000022685	CALM2 (ENSPPRG00000000159)	STPG4 (ENSPPRG00000000369)
Tiger	DUPLICATION
Tiger	MODERN SPECIES	130	KDELR3 (ENSPTIG00000006911)	CSNK1E (ENSPTIG00000021791)	TMEM184B (ENSPTIG00000020913)	PLA2G6 (ENSPTIG00000016175)	BAIAP2L2 (ENSPTIG00000012149)	PICK1 (ENSPTIG00000006829)	SOX10 (ENSPTIG00000004936)	POLR2F (ENSPTIG00000000632)	C22orf23 (ENSPTIG00000019073)	MICALL1 (ENSPTIG00000017255)	EIF3L (ENSPTIG00000013809)	ENSPTIG00000013256	GCAT (ENSPTIG00000011126)	H1-0 (ENSPTIG00000007072)	NRXN1 (ENSPTIG00000018682) #22	ENSPTIG00000017171 #22
Tiger	MODERN SPECIES	130	DDX17 (ENSPTIG00000008733)	KDELR3 (ENSPTIG00000006911)	CSNK1E (ENSPTIG00000021791)	TMEM184B (ENSPTIG00000020913)	PLA2G6 (ENSPTIG00000016175)	BAIAP2L2 (ENSPTIG00000012149)	PICK1 (ENSPTIG00000006829)	SOX10 (ENSPTIG00000004936)	POLR2F (ENSPTIG00000000632)	C22orf23 (ENSPTIG00000019073)	MICALL1 (ENSPTIG00000017255)	EIF3L (ENSPTIG00000013809)	ENSPTIG00000013256	GCAT (ENSPTIG00000011126)	H1-0 (ENSPTIG00000007072)	NRXN1 (ENSPTIG00000018682) #22	ENSPTIG00000017171 #22
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00950000185154	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Camelidae	ANCESTRAL SPECIES	12	ENSGT00390000012785	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000165870	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00950000185154	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Alpaca	MODERN SPECIES	2271																NRXN1 (ENSVPAG00000003899) #22
Arabian camel	MODERN SPECIES	6	CCDC88A (ENSCDRG00005022438)	ENSCDRG00005022437	MTIF2 (ENSCDRG00005022436)	ENSCDRG00005022434	CLHC1 (ENSCDRG00005022433)	RTN4 (ENSCDRG00005022430)	EML6 (ENSCDRG00005022427)	SPTBN1 (ENSCDRG00005022417)	C2orf73 (ENSCDRG00005022414)	ENSCDRG00005022412	ACYP2 (ENSCDRG00005022410)	PSME4 (ENSCDRG00005022403) #20	ERLEC1 (ENSCDRG00005022398) #21	CHAC2 (ENSCDRG00005022396)	ASB3 (ENSCDRG00005022394)	NRXN1 (ENSCDRG00005022389) #22	FSHR (ENSCDRG00005022388)	LHCGR (ENSCDRG00005022386) ##23	GTF2A1L (ENSCDRG00005022385) #24	STON1 (ENSCDRG00005022383) #25	PPP1R21 (ENSCDRG00005022382) #26	FOXN2 (ENSCDRG00005022381)	ENSCDRG00005022380	FBXO11 (ENSCDRG00005022378) ##28	MSH6 (ENSCDRG00005022377)	KCNK12 (ENSCDRG00005022375) #29	MSH2 (ENSCDRG00005022352)	EPCAM (ENSCDRG00005022333)	CALM2 (ENSCDRG00005022330)	STPG4 (ENSCDRG00005022325)	TTC7A (ENSCDRG00005022322)
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00950000185154	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B
Yarkand deer	MODERN SPECIES	2	ENSCHYG00000018614	ENSCHYG00000018581	RTN4 (ENSCHYG00000018275)	EML6 (ENSCHYG00000017556)	SPTBN1 (ENSCHYG00000016452)	ENSCHYG00000016372	C2orf73 (ENSCHYG00000016294)	ENSCHYG00000016240	ENSCHYG00000016207	ENSCHYG00000016000	PSME4 (ENSCHYG00000015425) #20	ERLEC1 (ENSCHYG00000014797) #21	CHAC2 (ENSCHYG00000014670)	ASB3 (ENSCHYG00000014492)	ENSCHYG00000014456	NRXN1 (ENSCHYG00000011322) #22	ENSCHYG00000011174	FSHR (ENSCHYG00000010939)	LHCGR (ENSCHYG00000010738) ##23	GTF2A1L (ENSCHYG00000010466) #24	ENSCHYG00000010413 #25	PPP1R21 (ENSCHYG00000010072) #26	FOXN2 (ENSCHYG00000009915)	ENSCHYG00000009840	FBXO11 (ENSCHYG00000009476) ##28	MSH6 (ENSCHYG00000009226)	KCNK12 (ENSCHYG00000009154) #29	MSH2 (ENSCHYG00000018673)	EPCAM (ENSCHYG00000018529)	STPG4 (ENSCHYG00000018178)	TTC7A (ENSCHYG00000017758)
Percora_a	ANCESTRAL SPECIES	13	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B.t
Siberian musk deer	MODERN SPECIES	243	ENSMMSG00000004022	MTIF2 (ENSMMSG00000004033)	RPS27A (ENSMMSG00000004050)	CLHC1 (ENSMMSG00000004065)	RTN4 (ENSMMSG00000004093)	EML6 (ENSMMSG00000004137)	SPTBN1 (ENSMMSG00000004184)	C2orf73 (ENSMMSG00000004228)	ACYP2 (ENSMMSG00000004240)	PSME4 (ENSMMSG00000004288) #20	ASB3 (ENSMMSG00000004359)	ERLEC1 (ENSMMSG00000004416) #21	CHAC2 (ENSMMSG00000004484)	ENSMMSG00000004498	ENSMMSG00000004511	NRXN1 (ENSMMSG00000004682) #22	FSHR (ENSMMSG00000008638)	LHCGR (ENSMMSG00000008813) ##23	GTF2A1L (ENSMMSG00000009159) #24	STON1 (ENSMMSG00000009347) #25	PPP1R21 (ENSMMSG00000009439) #26	FOXN2 (ENSMMSG00000009580)	ENSMMSG00000009637	ENSMMSG00000009665	FBXO11 (ENSMMSG00000009698) ##28	MSH6 (ENSMMSG00000009764)	KCNK12 (ENSMMSG00000009891) #29	ENSMMSG00000009925	EPCAM (ENSMMSG00000010033)	ENSMMSG00000010072	CALM2 (ENSMMSG00000010115)
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B.s
Caprinae	ANCESTRAL SPECIES	9	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a.b	ENSGT00910000144152.b.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00900000143213	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00950000183210.d.a.c.a.a.b.f.a.a.b.b	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b
Rambouillet Sheep	MODERN SPECIES	19	CCDC88A (ENSOARG00020000430)	ENSOARG00020000668	MTIF2 (ENSOARG00020000721)	RPS27A (ENSOARG00020000741)	RTN4 (ENSOARG00020000804)	EML6 (ENSOARG00020000918)	SPTBN1 (ENSOARG00020000992)	C2orf73 (ENSOARG00020001065)	ENSOARG00020001082	ENSOARG00020001110	PSME4 (ENSOARG00020001134) #20	ASB3 (ENSOARG00020001287)	ERLEC1 (ENSOARG00020001369) #21	CHAC2 (ENSOARG00020001428)	ENSOARG00020001440	NRXN1 (ENSOARG00020001627) #22	ENSOARG00020003028	ENSOARG00020003042	ENSOARG00020003060	FSHR (ENSOARG00020003107)	ENSOARG00020003239	LHCGR (ENSOARG00020003269) ##23	GTF2A1L (ENSOARG00020003448) #24	STON1 (ENSOARG00020003561) #25	PPP1R21 (ENSOARG00020003660) #26	ENSOARG00020004435	FOXN2 (ENSOARG00020004450)	ENSOARG00020004540	ENSOARG00020004545	FBXO11 (ENSOARG00020004568) ##28	MSH6 (ENSOARG00020004740)
Goat	DUPLICATION
Goat	MODERN SPECIES	2	MTIF2 (ENSCHIG00000010297)	ENSCHIG00000013743	CLHC1 (ENSCHIG00000022862)	RTN4 (ENSCHIG00000007157)	EML6 (ENSCHIG00000023364)	SPTBN1 (ENSCHIG00000014950)	C2orf73 (ENSCHIG00000022786)	ENSCHIG00000025445	ENSCHIG00000001765	PSME4 (ENSCHIG00000022596) #20	GPR75 (ENSCHIG00000009039)	ERLEC1 (ENSCHIG00000012003) #21	CHAC2 (ENSCHIG00000016681)	ASB3 (ENSCHIG00000025413)	ENSCHIG00000027041 #22	ENSCHIG00000016778 #22	ENSCHIG00000023901	ENSCHIG00000013329	ENSCHIG00000023509	ENSCHIG00000021404	FSHR (ENSCHIG00000023353)	LHCGR (ENSCHIG00000005935) ##23	GTF2A1L (ENSCHIG00000019307) #24	STON1 (ENSCHIG00000013272) #25	ENSCHIG00000022262	PPP1R21 (ENSCHIG00000018575) #26	FOXN2 (ENSCHIG00000025720)	ENSCHIG00000011530	FBXO11 (ENSCHIG00000024805) ##28	MSH6 (ENSCHIG00000014129)	KCNK12 (ENSCHIG00000009025) #29
Goat	MODERN SPECIES	2	ENSCHIG00000010720	MTIF2 (ENSCHIG00000010297)	ENSCHIG00000013743	CLHC1 (ENSCHIG00000022862)	RTN4 (ENSCHIG00000007157)	EML6 (ENSCHIG00000023364)	SPTBN1 (ENSCHIG00000014950)	C2orf73 (ENSCHIG00000022786)	ENSCHIG00000025445	ENSCHIG00000001765	PSME4 (ENSCHIG00000022596) #20	GPR75 (ENSCHIG00000009039)	ERLEC1 (ENSCHIG00000012003) #21	CHAC2 (ENSCHIG00000016681)	ASB3 (ENSCHIG00000025413)	ENSCHIG00000027041 #22	ENSCHIG00000016778 #22	ENSCHIG00000023901	ENSCHIG00000013329	ENSCHIG00000023509	ENSCHIG00000021404	FSHR (ENSCHIG00000023353)	LHCGR (ENSCHIG00000005935) ##23	GTF2A1L (ENSCHIG00000019307) #24	STON1 (ENSCHIG00000013272) #25	ENSCHIG00000022262	PPP1R21 (ENSCHIG00000018575) #26	FOXN2 (ENSCHIG00000025720)	ENSCHIG00000011530	FBXO11 (ENSCHIG00000024805) ##28	MSH6 (ENSCHIG00000014129)
Bovinae	ANCESTRAL SPECIES	1	ENSGT00730000111085.A	ENSGT00940000156988	ENSGT00940000159127	ENSGT00940000161304	ENSGT00390000004835	ENSGT00530000063187.B.a	ENSGT00530000063187.B.b	ENSGT00940000158798.e	ENSGT00940000158798.f	ENSGT00940000154327.b.e.a	ENSGT00940000160740	ENSGT00940000156073	ENSGT01060000248556.B.t	ENSGT00390000001523	ENSGT00390000003156.a.a	ENSGT00940000154292.a.b #22	ENSGT00910000148099	ENSGT00940000154819.a.a	ENSGT00940000167507	ENSGT00940000161912	ENSGT00940000159218.b	ENSGT00390000014590	ENSGT00390000010157.a	ENSGT00940000154482.b.a	ENSGT00390000012620	ENSGT00390000002727	ENSGT00390000008557	ENSGT00390000008279.a.c	ENSGT00390000014384	ENSGT00940000158291	ENSGT00920000149170
American bison	MODERN SPECIES	3284	GOLT1B (ENSBBBG00000011257)	RECQL (ENSBBBG00000011291)	PYROXD1 (ENSBBBG00000011307)	ENSBBBG00000011315	SLCO1A2 (ENSBBBG00000011337)	ENSBBBG00000011351	SLCO1C1 (ENSBBBG00000011379)	PDE3A (ENSBBBG00000002016)	AEBP2 (ENSBBBG00000002084)	PLEKHA5 (ENSBBBG00000011510)	CAPZA3 (ENSBBBG00000008490)	PLCZ1 (ENSBBBG00000011547)	ENSBBBG00000011554	ENSBBBG00000011557	ENSBBBG00000011562	NRXN1 (ENSBBBG00000011976) #22	FSHR (ENSBBBG00000012015)	LHCGR (ENSBBBG00000002263) ##23	GTF2A1L (ENSBBBG00000008281) #24	STON1 (ENSBBBG00000002275) #25	PPP1R21 (ENSBBBG00000007544) #26	FOXN2 (ENSBBBG00000002303)
Bos	ANCESTRAL SPECIES	5	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000162821.h	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000153431.a.l.a	ENSGT00940000163627	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B.t.a
Bos_a	ANCESTRAL SPECIES	6	ENSGT00440000033965	ENSGT00900000141103	ENSGT00940000165870	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000162821.h	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638	ENSGT00940000154141.B.t.a
Domestic yak	MODERN SPECIES	28	CLHC1 (ENSBGRG00000017260)	ENSBGRG00000017230	RTN4 (ENSBGRG00000016653)	EML6 (ENSBGRG00000016097)	SPTBN1 (ENSBGRG00000015284)	C2orf73 (ENSBGRG00000015151)	ENSBGRG00000015082	ENSBGRG00000014877	PSME4 (ENSBGRG00000014328) #20	ERLEC1 (ENSBGRG00000014222) #21	CHAC2 (ENSBGRG00000014198)	ASB3 (ENSBGRG00000014000)	ENSBGRG00000013902	ENSBGRG00000013848	ENSBGRG00000013820	NRXN1 (ENSBGRG00000012349) #22	FSHR (ENSBGRG00000011870)	LHCGR (ENSBGRG00000011219) ##23	ENSBGRG00000011163	GTF2A1L (ENSBGRG00000010808) #24	STON1 (ENSBGRG00000010690) #25	PPP1R21 (ENSBGRG00000010524) #26	FOXN2 (ENSBGRG00000010377)	ENSBGRG00000010333	FBXO11 (ENSBGRG00000009485) ##28	MSH6 (ENSBGRG00000009341)	KCNK12 (ENSBGRG00000009326) #29	MSH2 (ENSBGRG00000009226)	EPCAM (ENSBGRG00000009151)	ENSBGRG00000008892	STPG4 (ENSBGRG00000008758)
Wild yak	MODERN SPECIES	858																NRXN1 (ENSBMUG00000023826) #22	ENSBMUG00000023880
Bos_b	ANCESTRAL SPECIES	9	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00940000162821.h	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000156532.l	ENSGT00940000159080	ENSGT00940000153431.a.l.a	ENSGT00940000163627	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.a.a.a	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Hybrid Bos Indicus	MODERN SPECIES	2	SPTBN1 (ENSBIXG00005003004)	C2orf73 (ENSBIXG00005018616)	ENSBIXG00005018704	PSME4 (ENSBIXG00005018741) #20	GPR75 (ENSBIXG00005018758)	ERLEC1 (ENSBIXG00005018839) #21	CHAC2 (ENSBIXG00005018860)	ENSBIXG00005018883	ASB3 (ENSBIXG00005018919)	ENSBIXG00005018960	ENSBIXG00005018968	ENSBIXG00005018993	ENSBIXG00005019024	ENSBIXG00005019035	ENSBIXG00005019055	NRXN1 (ENSBIXG00005020353) #22	FSHR (ENSBIXG00005020542)	ENSBIXG00005007156	ENSBIXG00005020568	LHCGR (ENSBIXG00005020676) ##23	GTF2A1L (ENSBIXG00005020773) #24	STON1 (ENSBIXG00005020833) #25	PPP1R21 (ENSBIXG00005020937) #26	FOXN2 (ENSBIXG00005003545)	FBXO11 (ENSBIXG00005021079) ##28	MSH6 (ENSBIXG00005021217)	KCNK12 (ENSBIXG00005021241) #29	MSH2 (ENSBIXG00005021319)	EPCAM (ENSBIXG00005003602)	CALM2 (ENSBIXG00005021412)	STPG4 (ENSBIXG00005021460)
Cow	DUPLICATION
Cow	MODERN SPECIES	2	SPTBN1 (ENSBTAG00000006995)	C11H2orf73 (ENSBTAG00000006861)	ENSBTAG00000046563	ACYP2 (ENSBTAG00000006852)	ENSBTAG00000024019	PSME4 (ENSBTAG00000020262) #20	GPR75 (ENSBTAG00000000102)	ERLEC1 (ENSBTAG00000008068) #21	CHAC2 (ENSBTAG00000019459)	ENSBTAG00000051601	ASB3 (ENSBTAG00000019458)	ENSBTAG00000002943	ENSBTAG00000027786	ENSBTAG00000052116	NRXN1 (ENSBTAG00000024021) #22	NRXN1 (ENSBTAG00000046199) #22	FSHR (ENSBTAG00000032424)	ENSBTAG00000027015	LHCGR (ENSBTAG00000016573) ##23	GTF2A1L (ENSBTAG00000023999) #24	STON1 (ENSBTAG00000004168) #25	PPP1R21 (ENSBTAG00000002570) #26	FOXN2 (ENSBTAG00000015151)	FBXO11 (ENSBTAG00000001425) ##28	MSH6 (ENSBTAG00000001424)	KCNK12 (ENSBTAG00000017500) #29	MSH2 (ENSBTAG00000002742)	EPCAM (ENSBTAG00000006474)	CALM2 (ENSBTAG00000001575)	STPG4 (ENSBTAG00000049698)	TTC7A (ENSBTAG00000032558)
Cow	MODERN SPECIES	2	EML6 (ENSBTAG00000011101)	SPTBN1 (ENSBTAG00000006995)	C11H2orf73 (ENSBTAG00000006861)	ENSBTAG00000046563	ACYP2 (ENSBTAG00000006852)	ENSBTAG00000024019	PSME4 (ENSBTAG00000020262) #20	GPR75 (ENSBTAG00000000102)	ERLEC1 (ENSBTAG00000008068) #21	CHAC2 (ENSBTAG00000019459)	ENSBTAG00000051601	ASB3 (ENSBTAG00000019458)	ENSBTAG00000002943	ENSBTAG00000027786	ENSBTAG00000052116	NRXN1 (ENSBTAG00000024021) #22	NRXN1 (ENSBTAG00000046199) #22	FSHR (ENSBTAG00000032424)	ENSBTAG00000027015	LHCGR (ENSBTAG00000016573) ##23	GTF2A1L (ENSBTAG00000023999) #24	STON1 (ENSBTAG00000004168) #25	PPP1R21 (ENSBTAG00000002570) #26	FOXN2 (ENSBTAG00000015151)	FBXO11 (ENSBTAG00000001425) ##28	MSH6 (ENSBTAG00000001424)	KCNK12 (ENSBTAG00000017500) #29	MSH2 (ENSBTAG00000002742)	EPCAM (ENSBTAG00000006474)	CALM2 (ENSBTAG00000001575)	STPG4 (ENSBTAG00000049698)
Cetacea	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Blue whale	MODERN SPECIES	4	MTIF2 (ENSBMSG00010019514)	ENSBMSG00010019536	CLHC1 (ENSBMSG00010019565)	ENSBMSG00010019608	RTN4 (ENSBMSG00010019650)	EML6 (ENSBMSG00010019842)	SPTBN1 (ENSBMSG00010019921)	ENSBMSG00010020013	C2orf73 (ENSBMSG00010020022)	ACYP2 (ENSBMSG00010020044)	ENSBMSG00010020058	PSME4 (ENSBMSG00010020110) #20	ASB3 (ENSBMSG00010020218)	ERLEC1 (ENSBMSG00010020317) #21	CHAC2 (ENSBMSG00010020397)	NRXN1 (ENSBMSG00010020610) #22	FSHR (ENSBMSG00010021830)	LHCGR (ENSBMSG00010021848) ##23	GTF2A1L (ENSBMSG00010021873) #24	STON1 (ENSBMSG00010021880) #25	PPP1R21 (ENSBMSG00010021894) #26	FOXN2 (ENSBMSG00010021911)	FBXO11 (ENSBMSG00010021915) ##28	MSH6 (ENSBMSG00010021923)	KCNK12 (ENSBMSG00010011727) #29	MSH2 (ENSBMSG00010011772)	EPCAM (ENSBMSG00010011820)	ENSBMSG00010011835	CALM2 (ENSBMSG00010011851)	STPG4 (ENSBMSG00010011867)	TTC7A (ENSBMSG00010011891)
Odontoceti	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Sperm whale	MODERN SPECIES	3	MTIF2 (ENSPCTG00005004195)	RPS27A (ENSPCTG00005004175)	CLHC1 (ENSPCTG00005004134)	ENSPCTG00005004097	RTN4 (ENSPCTG00005020439)	EML6 (ENSPCTG00005020165)	SPTBN1 (ENSPCTG00005018634)	ENSPCTG00005018482	C12H2orf73 (ENSPCTG00005018405)	ACYP2 (ENSPCTG00005018357)	PSME4 (ENSPCTG00005018222) #20	ERLEC1 (ENSPCTG00005017732) #21	CHAC2 (ENSPCTG00005017650)	ASB3 (ENSPCTG00005017506)	ENSPCTG00005017492	NRXN1 (ENSPCTG00005014692) #22	FSHR (ENSPCTG00005014365)	LHCGR (ENSPCTG00005013644) ##23	GTF2A1L (ENSPCTG00005013351) #24	STON1 (ENSPCTG00005013286) #25	PPP1R21 (ENSPCTG00005013035) #26	FOXN2 (ENSPCTG00005012938)	FBXO11 (ENSPCTG00005012807) ##28	MSH6 (ENSPCTG00005012642)	KCNK12 (ENSPCTG00005012592) #29	MSH2 (ENSPCTG00005012352)	EPCAM (ENSPCTG00005012231)	ENSPCTG00005012212	CALM3 (ENSPCTG00005012107)	STPG4 (ENSPCTG00005012076)	TTC7A (ENSPCTG00005012058)
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Dolphin	MODERN SPECIES	2190																NRXN1 (ENSTTRG00000016494) #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Vaquita	MODERN SPECIES	4	CLHC1 (ENSPSNG00000016185)	RTN4 (ENSPSNG00000015861)	EML6 (ENSPSNG00000015381)	SPTBN1 (ENSPSNG00000014881)	C2orf73 (ENSPSNG00000014725)	ACYP2 (ENSPSNG00000014627)	ENSPSNG00000014551	PSME4 (ENSPSNG00000014194) #20	GPR75 (ENSPSNG00000014097)	ERLEC1 (ENSPSNG00000013931) #21	CHAC2 (ENSPSNG00000013787)	ASB3 (ENSPSNG00000013556)	ENSPSNG00000013504	ENSPSNG00000013411	ENSPSNG00000013363	NRXN1 (ENSPSNG00000011177) #22	FSHR (ENSPSNG00000010658)	LHCGR (ENSPSNG00000010226) ##23	GTF2A1L (ENSPSNG00000009974) #24	STON1 (ENSPSNG00000010101) #25	PPP1R21 (ENSPSNG00000009787) #26	FOXN2 (ENSPSNG00000009685)	FBXO11 (ENSPSNG00000009596) ##28	MSH6 (ENSPSNG00000009454)	KCNK12 (ENSPSNG00000009311) #29	MSH2 (ENSPSNG00000009243)	EPCAM (ENSPSNG00000009186)	ENSPSNG00000009132	CALM2 (ENSPSNG00000009077)	STPG4 (ENSPSNG00000008945)	TTC7A (ENSPSNG00000008809)
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00910000144152.a.b	ENSGT00950000183166.a.a.a.b	ENSGT00390000006707.q.c	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00940000160112.o.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00860000136122	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00950000185154	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00390000003248.a.a.b.c.a	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095
Narwhal	MODERN SPECIES	305	ENSMMNG00015009978	CLHC1 (ENSMMNG00015010001)	ENSMMNG00015010027	RTN4 (ENSMMNG00015010056)	EML6 (ENSMMNG00015010115)	SPTBN1 (ENSMMNG00015010187)	ENSMMNG00015010286	C2orf73 (ENSMMNG00015010299)	ENSMMNG00015010308	ENSMMNG00015010319	PSME4 (ENSMMNG00015010338) #20	GPR75 (ENSMMNG00015010387)	ERLEC1 (ENSMMNG00015010437) #21	ASB3 (ENSMMNG00015010548)	CHAC2 (ENSMMNG00015010577)	NRXN1 (ENSMMNG00015010769) #22	ENSMMNG00015011190	ENSMMNG00015011204	FSHR (ENSMMNG00015011225)	LHCGR (ENSMMNG00015011283) ##23	GTF2A1L (ENSMMNG00015011353) #24	STON1 (ENSMMNG00015011373) #25	PPP1R21 (ENSMMNG00015011420) #26	FOXN2 (ENSMMNG00015011506)	FBXO11 (ENSMMNG00015011536) ##28	MSH6 (ENSMMNG00015011587)	KCNK12 (ENSMMNG00015011625) #29	MSH2 (ENSMMNG00015011643)	EPCAM (ENSMMNG00015011682)	ENSMMNG00015011701	CALM2 (ENSMMNG00015011714)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	37															ENSDLEG00000000212 #22	ENSDLEG00000000285 #22	NRXN1 (ENSDLEG00000000435)	ENSDLEG00000000480	ENSDLEG00000000494	FSHR (ENSDLEG00000000519)	GTF2A1L (ENSDLEG00000000559) #24	LHCGR (ENSDLEG00000000631) ##23	STON1 (ENSDLEG00000000689) #25	PPP1R21 (ENSDLEG00000000735) #26	FOXN2 (ENSDLEG00000000878)	ENSDLEG00000000900	FBXO11 (ENSDLEG00000000914) ##28	MSH6 (ENSDLEG00000000971)	KCNK12 (ENSDLEG00000001009) #29	MSH2 (ENSDLEG00000001025)	EPCAM (ENSDLEG00000001072)
Beluga whale	MODERN SPECIES	37																ENSDLEG00000000212 #22	ENSDLEG00000000285 #22	NRXN1 (ENSDLEG00000000435)	ENSDLEG00000000480	ENSDLEG00000000494	FSHR (ENSDLEG00000000519)	GTF2A1L (ENSDLEG00000000559) #24	LHCGR (ENSDLEG00000000631) ##23	STON1 (ENSDLEG00000000689) #25	PPP1R21 (ENSDLEG00000000735) #26	FOXN2 (ENSDLEG00000000878)	ENSDLEG00000000900	FBXO11 (ENSDLEG00000000914) ##28	MSH6 (ENSDLEG00000000971)	KCNK12 (ENSDLEG00000001009) #29	MSH2 (ENSDLEG00000001025)
Suina	ANCESTRAL SPECIES	124																ENSGT00940000154292.a.b #22	ENSGT00900000143213
Chacoan peccary	MODERN SPECIES	777	CCDC88A (ENSCWAG00000011225)	ENSCWAG00000011162	MTIF2 (ENSCWAG00000011119)	ENSCWAG00000011072	CLHC1 (ENSCWAG00000010969)	RTN4 (ENSCWAG00000010735)	EML6 (ENSCWAG00000010482)	SPTBN1 (ENSCWAG00000010294)	C2orf73 (ENSCWAG00000010195)	ACYP2 (ENSCWAG00000010136)	PSME4 (ENSCWAG00000009805) #20	ERLEC1 (ENSCWAG00000009517) #21	CHAC2 (ENSCWAG00000009439)	ASB3 (ENSCWAG00000009257)	ENSCWAG00000009228	NRXN1 (ENSCWAG00000005409) #22	FSHR (ENSCWAG00000005119)	LHCGR (ENSCWAG00000004817) ##23	GTF2A1L (ENSCWAG00000004721) #24	STON1 (ENSCWAG00000004671) #25	PPP1R21 (ENSCWAG00000004171) #26	FOXN2 (ENSCWAG00000004088)	FBXO11 (ENSCWAG00000004007) ##28	MSH6 (ENSCWAG00000003923)	KCNK12 (ENSCWAG00000003900) #29	MSH2 (ENSCWAG00000003791)	EPCAM (ENSCWAG00000003750)	ENSCWAG00000003668	STPG4 (ENSCWAG00000019847)	TTC7A (ENSCWAG00000019747)	ENSCWAG00000019718
Pig	DUPLICATION
Pig	MODERN SPECIES	11	ENSSSCG00000034617	CLHC1 (ENSSSCG00000008402)	RTN4 (ENSSSCG00000032007)	EML6 (ENSSSCG00000026559)	SPTBN1 (ENSSSCG00000040786)	C2orf73 (ENSSSCG00000008410)	ACYP2 (ENSSSCG00000025224)	PSME4 (ENSSSCG00000008412) #20	GPR75 (ENSSSCG00000008413)	ERLEC1 (ENSSSCG00000008414) #21	ASB3 (ENSSSCG00000008415)	CHAC2 (ENSSSCG00000037577)	ENSSSCG00000042900	ENSSSCG00000044149	NRXN1 (ENSSSCG00000026180) #22	ENSSSCG00000053662 #22	ENSSSCG00000035920	ENSSSCG00000048824	FSHR (ENSSSCG00000029084)	LHCGR (ENSSSCG00000008421) ##23	ENSSSCG00000053929	GTF2A1L (ENSSSCG00000033106) #24	STON1 (ENSSSCG00000057606) #25	PPP1R21 (ENSSSCG00000008423) #26	FOXN2 (ENSSSCG00000029593)	ENSSSCG00000058673	FBXO11 (ENSSSCG00000029485) ##28	MSH6 (ENSSSCG00000020931)	KCNK12 (ENSSSCG00000062991) #29	ENSSSCG00000052201	MSH2 (ENSSSCG00000008428)
Pig	MODERN SPECIES	11	MTIF2 (ENSSSCG00000008404)	ENSSSCG00000034617	CLHC1 (ENSSSCG00000008402)	RTN4 (ENSSSCG00000032007)	EML6 (ENSSSCG00000026559)	SPTBN1 (ENSSSCG00000040786)	C2orf73 (ENSSSCG00000008410)	ACYP2 (ENSSSCG00000025224)	PSME4 (ENSSSCG00000008412) #20	GPR75 (ENSSSCG00000008413)	ERLEC1 (ENSSSCG00000008414) #21	ASB3 (ENSSSCG00000008415)	CHAC2 (ENSSSCG00000037577)	ENSSSCG00000042900	ENSSSCG00000044149	NRXN1 (ENSSSCG00000026180) #22	ENSSSCG00000053662 #22	ENSSSCG00000035920	ENSSSCG00000048824	FSHR (ENSSSCG00000029084)	LHCGR (ENSSSCG00000008421) ##23	ENSSSCG00000053929	GTF2A1L (ENSSSCG00000033106) #24	STON1 (ENSSSCG00000057606) #25	PPP1R21 (ENSSSCG00000008423) #26	FOXN2 (ENSSSCG00000029593)	ENSSSCG00000058673	FBXO11 (ENSSSCG00000029485) ##28	MSH6 (ENSSSCG00000020931)	KCNK12 (ENSSSCG00000062991) #29	ENSSSCG00000052201
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	7295																ENSEEUG00000004677 #22
Hedgehog	MODERN SPECIES	8594																ENSEEUG00000003548 #22
Hedgehog	MODERN SPECIES	12687																ENSEEUG00000006263 #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	5715																ENSSARG00000002059 #22
Common shrew	MODERN SPECIES	6782																ENSSARG00000012450 #22
Sauria	ANCESTRAL SPECIES	1	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01030000234712.a	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01030000234712.a	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00950000182980.a.b.b.b	ENSGT00390000008095	ENSGT00940000158638
Cryptodira	ANCESTRAL SPECIES	49	ENSGT00940000155559.b	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01030000234712.a	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000158638	ENSGT00390000008095	ENSGT00950000182980.a.b.b.b	ENSGT00390000018245.c	ENSGT00550000074867	ENSGT00940000161424 #29	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01030000234712.a	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00970000193722	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00910000144152.a	ENSGT00900000141103	ENSGT00940000155559.b
Emydidae	ANCESTRAL SPECIES	302																ENSGT00940000154292.a.b #22	ENSGT00940000163749
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2373														ENSCPBG00000016563	ODC1 (ENSCPBG00000016560)	ENSCPBG00000016523 #22	NRXN1 (ENSCPBG00000016509) #22
painted turtle	MODERN SPECIES	2373													ENSCPBG00000016563	ODC1 (ENSCPBG00000016560)	ENSCPBG00000016523 #22	NRXN1 (ENSCPBG00000016509) #22
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	56																ENSTMTG00000007408 #22	ENSTMTG00000007422 #22	ENSTMTG00000007500
Three-toed box turtle	MODERN SPECIES	57																ENSTMTG00000007520 #22	ENSTMTG00000007540 #22	ENSTMTG00000007627	ENSTMTG00000007637
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	57															ENSTMTG00000007520 #22	ENSTMTG00000007540 #22	ENSTMTG00000007627	ENSTMTG00000007637
Three-toed box turtle	MODERN SPECIES	56															ENSTMTG00000007408 #22	ENSTMTG00000007422 #22	ENSTMTG00000007500
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000154141.B	ENSGT00940000158638	ENSGT00390000008095	ENSGT00950000182980.a.b.b.b	ENSGT00390000018245.c	ENSGT00550000074867	ENSGT00940000161424 #29	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433.e #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00910000144152.a	ENSGT00900000141103	ENSGT00940000155559.b	ENSGT00390000012785
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	17	EPCAM (ENSGEVG00005000300)	MSH2 (ENSGEVG00005000351)	ENSGEVG00005000389 #29	ENSGEVG00005000403 #29	SPTBN1 (ENSGEVG00005000431)	ENSGEVG00005000568	C2orf73 (ENSGEVG00005000581)	ACYP2 (ENSGEVG00005000596)	PSME4 (ENSGEVG00005000654) #20	GPR75 (ENSGEVG00005000753)	ERLEC1 (ENSGEVG00005000764) #21	ASB3 (ENSGEVG00005000787)	CHAC2 (ENSGEVG00005000817)	ENSGEVG00005000827	ENSGEVG00005000844	ENSGEVG00005000854 #22	ENSGEVG00005000915 #22	ENSGEVG00005001020	ENSGEVG00005001032 #22	ENSGEVG00005001044	ENSGEVG00005001062	FSHR (ENSGEVG00005001085)	STON1 (ENSGEVG00005001161) #25	PPP1R21 (ENSGEVG00005001229) #26	FOXN2 (ENSGEVG00005001264)	FBXO11 (ENSGEVG00005001345) ##28	MSH6 (ENSGEVG00005001536)	ENSGEVG00005001560	EML6 (ENSGEVG00005001611)	RTN4 (ENSGEVG00005001708)	CLHC1 (ENSGEVG00005001797)
Goode s thornscrub tortoise	DUPLICATION
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005000403 #29	SPTBN1 (ENSGEVG00005000431)	ENSGEVG00005000568	C2orf73 (ENSGEVG00005000581)	ACYP2 (ENSGEVG00005000596)	PSME4 (ENSGEVG00005000654) #20	GPR75 (ENSGEVG00005000753)	ERLEC1 (ENSGEVG00005000764) #21	ASB3 (ENSGEVG00005000787)	CHAC2 (ENSGEVG00005000817)	ENSGEVG00005000827	ENSGEVG00005000844	ENSGEVG00005000854 #22	ENSGEVG00005000915 #22	ENSGEVG00005001020	ENSGEVG00005001032 #22	ENSGEVG00005001044	ENSGEVG00005001062	FSHR (ENSGEVG00005001085)	STON1 (ENSGEVG00005001161) #25	PPP1R21 (ENSGEVG00005001229) #26	FOXN2 (ENSGEVG00005001264)	FBXO11 (ENSGEVG00005001345) ##28	MSH6 (ENSGEVG00005001536)	ENSGEVG00005001560	EML6 (ENSGEVG00005001611)	RTN4 (ENSGEVG00005001708)	CLHC1 (ENSGEVG00005001797)	RPS27A (ENSGEVG00005001865)	MTIF2 (ENSGEVG00005001889)	ENSGEVG00005001931
Goode s thornscrub tortoise	MODERN SPECIES	17	MSH2 (ENSGEVG00005000351)	ENSGEVG00005000389 #29	ENSGEVG00005000403 #29	SPTBN1 (ENSGEVG00005000431)	ENSGEVG00005000568	C2orf73 (ENSGEVG00005000581)	ACYP2 (ENSGEVG00005000596)	PSME4 (ENSGEVG00005000654) #20	GPR75 (ENSGEVG00005000753)	ERLEC1 (ENSGEVG00005000764) #21	ASB3 (ENSGEVG00005000787)	CHAC2 (ENSGEVG00005000817)	ENSGEVG00005000827	ENSGEVG00005000844	ENSGEVG00005000854 #22	ENSGEVG00005000915 #22	ENSGEVG00005001020	ENSGEVG00005001032 #22	ENSGEVG00005001044	ENSGEVG00005001062	FSHR (ENSGEVG00005001085)	STON1 (ENSGEVG00005001161) #25	PPP1R21 (ENSGEVG00005001229) #26	FOXN2 (ENSGEVG00005001264)	FBXO11 (ENSGEVG00005001345) ##28	MSH6 (ENSGEVG00005001536)	ENSGEVG00005001560	EML6 (ENSGEVG00005001611)	RTN4 (ENSGEVG00005001708)	CLHC1 (ENSGEVG00005001797)	RPS27A (ENSGEVG00005001865)
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	2525													ENSCABG00000009178	ENSCABG00000009177	ENSCABG00000009176	ENSCABG00000009174 #22	IGFALS (ENSCABG00000009173)	NUBP2 (ENSCABG00000009172)	SPSB3 (ENSCABG00000009171)
Abingdon island giant tortoise	MODERN SPECIES	557																ENSCABG00000012214 #22
Abingdon island giant tortoise	MODERN SPECIES	2437															ENSCABG00000015310	NRXN1 (ENSCABG00000015282) #22	ENSCABG00000015273
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1011	CCDC88A (ENSPSIG00000012810)	MTIF2 (ENSPSIG00000012738)	RPS27A (ENSPSIG00000012727)	CLHC1 (ENSPSIG00000012719)	ENSPSIG00000012712	RTN4 (ENSPSIG00000012697)	EML6 (ENSPSIG00000011986)	SPTBN1 (ENSPSIG00000011434)	C2orf73 (ENSPSIG00000011396)	ACYP2 (ENSPSIG00000011389)	PSME4 (ENSPSIG00000010998) #20	GPR75 (ENSPSIG00000001856)	ERLEC1 (ENSPSIG00000010984) #21	CHAC2 (ENSPSIG00000010886)	ASB3 (ENSPSIG00000010758)	ENSPSIG00000001851 #22	NRXN1 (ENSPSIG00000010475) #22	FSHR (ENSPSIG00000010412)	STON1 (ENSPSIG00000010184) #25	UTP25 (ENSPSIG00000010092)	TRERF1 (ENSPSIG00000009755)	UBR2 (ENSPSIG00000009033)	PRPH2 (ENSPSIG00000008499)	BICRAL (ENSPSIG00000008181)
Chinese turtle	MODERN SPECIES	1011	MTIF2 (ENSPSIG00000012738)	RPS27A (ENSPSIG00000012727)	CLHC1 (ENSPSIG00000012719)	ENSPSIG00000012712	RTN4 (ENSPSIG00000012697)	EML6 (ENSPSIG00000011986)	SPTBN1 (ENSPSIG00000011434)	C2orf73 (ENSPSIG00000011396)	ACYP2 (ENSPSIG00000011389)	PSME4 (ENSPSIG00000010998) #20	GPR75 (ENSPSIG00000001856)	ERLEC1 (ENSPSIG00000010984) #21	CHAC2 (ENSPSIG00000010886)	ASB3 (ENSPSIG00000010758)	ENSPSIG00000001851 #22	NRXN1 (ENSPSIG00000010475) #22	FSHR (ENSPSIG00000010412)	STON1 (ENSPSIG00000010184) #25	UTP25 (ENSPSIG00000010092)	TRERF1 (ENSPSIG00000009755)	UBR2 (ENSPSIG00000009033)	PRPH2 (ENSPSIG00000008499)	BICRAL (ENSPSIG00000008181)
Archosauria	ANCESTRAL SPECIES	5	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b	ENSGT00630000089942	ENSGT00950000183044.a.a.b	ENSGT00390000013955	ENSGT00940000155144	ENSGT00940000163359	ENSGT00940000155786	ENSGT00390000004599	ENSGT00390000008624	ENSGT00390000010423	ENSGT00940000158221	ENSGT00940000164869	ENSGT00940000154618	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000154482.b.b.b	ENSGT00390000007020	ENSGT00940000156510	ENSGT00940000156726	ENSGT00940000159392	ENSGT00940000156671	ENSGT00940000158937	ENSGT00390000003303	ENSGT01100000263537.b.b.c.a.b	ENSGT00940000156147	ENSGT00390000014113	ENSGT00940000155613	ENSGT00440000038430	ENSGT00940000156613
Aves	ANCESTRAL SPECIES	2	ENSGT00390000006580	ENSGT00940000164710	ENSGT00530000063651.b	ENSGT00630000089942	ENSGT00950000183044.a.a.b	ENSGT00390000013955	ENSGT00940000155144	ENSGT00940000163359	ENSGT00940000155786	ENSGT00390000004599	ENSGT00390000008624	ENSGT00390000010423	ENSGT00940000158221	ENSGT00940000164869	ENSGT00940000154618	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000154482.b.b.b	ENSGT00390000007020	ENSGT00940000156510	ENSGT00940000156726	ENSGT00940000159392	ENSGT00940000156671	ENSGT00940000158937	ENSGT00390000003303	ENSGT01100000263537.b.b.c.a.b	ENSGT00940000156147	ENSGT00390000014113	ENSGT00940000155613	ENSGT00440000038430	ENSGT00940000156613
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	254																ENSSCUG00000004199 #22	ENSSCUG00000004194	ENSSCUG00000004191 #22	FSHR (ENSSCUG00000004188)	LHCGR (ENSSCUG00000004186) ##23	ENSSCUG00000004185	GTF2A1L (ENSSCUG00000004184) #24	STON1 (ENSSCUG00000004183) #25	PPP1R21 (ENSSCUG00000004181) #26	ENSSCUG00000004180	FOXN2 (ENSSCUG00000004178)	FBXO11 (ENSSCUG00000004173) ##28	MSH6 (ENSSCUG00000004166)	KCNK12 (ENSSCUG00000004163) #29	MSH2 (ENSSCUG00000004160)	EPCAM (ENSSCUG00000004159)
African ostrich	MODERN SPECIES	254														ENSSCUG00000004199 #22	ENSSCUG00000004194	ENSSCUG00000004191 #22	FSHR (ENSSCUG00000004188)	LHCGR (ENSSCUG00000004186) ##23	ENSSCUG00000004185	GTF2A1L (ENSSCUG00000004184) #24	STON1 (ENSSCUG00000004183) #25	PPP1R21 (ENSSCUG00000004181) #26	ENSSCUG00000004180	FOXN2 (ENSSCUG00000004178)	FBXO11 (ENSSCUG00000004173) ##28	MSH6 (ENSSCUG00000004166)	KCNK12 (ENSSCUG00000004163) #29	MSH2 (ENSSCUG00000004160)	EPCAM (ENSSCUG00000004159)	SPDYA (ENSSCUG00000004158)	TRMT61B (ENSSCUG00000004155)
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254
Anatidae	ANCESTRAL SPECIES	11	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254
Pink-footed goose	DUPLICATION
Pink-footed goose	MODERN SPECIES	3																ENSABRG00000018436 #22	ENSABRG00000018428 #22	ENSABRG00000018423	FSHR (ENSABRG00000018391)	LHCGR (ENSABRG00000018381) ##23	ENSABRG00000018372 #24	ENSABRG00000018366 #24	STON1 (ENSABRG00000018362) #25	PPP1R21 (ENSABRG00000018335) #26	FOXN2 (ENSABRG00000018328)	FBXO11 (ENSABRG00000018311) ##28	MSH6 (ENSABRG00000018300)	KCNK12 (ENSABRG00000018292) #29	MSH2 (ENSABRG00000018277)	EPCAM (ENSABRG00000018271)	SPDYA (ENSABRG00000018268)
Pink-footed goose	MODERN SPECIES	3															ENSABRG00000018436 #22	ENSABRG00000018428 #22	ENSABRG00000018423	FSHR (ENSABRG00000018391)	LHCGR (ENSABRG00000018381) ##23	ENSABRG00000018372 #24	ENSABRG00000018366 #24	STON1 (ENSABRG00000018362) #25	PPP1R21 (ENSABRG00000018335) #26	FOXN2 (ENSABRG00000018328)	FBXO11 (ENSABRG00000018311) ##28	MSH6 (ENSABRG00000018300)	KCNK12 (ENSABRG00000018292) #29	MSH2 (ENSABRG00000018277)	EPCAM (ENSABRG00000018271)	SPDYA (ENSABRG00000018268)	TRMT61B (ENSABRG00000018263)
Duck	MODERN SPECIES	21	CST7 (ENSAPLG00000003056)	SYNDIG1 (ENSAPLG00000002971)	ENSAPLG00000002886	DSTN (ENSAPLG00000023943)	RRBP1 (ENSAPLG00000000581)	SNX5 (ENSAPLG00000016284)	MGME1 (ENSAPLG00000016203)	OVOL2 (ENSAPLG00000016199)	PET117 (ENSAPLG00000029005)	KAT14 (ENSAPLG00000016172)	DZANK1 (ENSAPLG00000005843)	POLR3F (ENSAPLG00000005533)	SEC23B (ENSAPLG00000004406)	ENSAPLG00000029844	DTD1 (ENSAPLG00000004266)	NRXN1 (ENSAPLG00000003929) #22	FSHR (ENSAPLG00000003689)	LHCGR (ENSAPLG00000003003) ##23	GTF2A1L (ENSAPLG00000028188) #24	STON1 (ENSAPLG00000002684) #25	PPP1R21 (ENSAPLG00000001162) #26	FOXN2 (ENSAPLG00000016372)	FBXO11 (ENSAPLG00000016215) ##28	MSH6 (ENSAPLG00000016015)	KCNK12 (ENSAPLG00000011603) #29	MSH2 (ENSAPLG00000015347)	EPCAM (ENSAPLG00000015136)	SPDYA (ENSAPLG00000015043)	TRMT61B (ENSAPLG00000023240)	WDR43 (ENSAPLG00000014314)	TOGARAM2 (ENSAPLG00000014230)
Phasianidae	ANCESTRAL SPECIES	29																ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182	ENSGT00940000160921	ENSGT00950000182836.a ##11	ENSGT00390000009189	ENSGT00940000154800	ENSGT00940000164440	ENSGT00940000159280	ENSGT00940000157706
Phasianidae_b	ANCESTRAL SPECIES	28																ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00960000189414	ENSGT00940000159274	ENSGT00940000160421	ENSGT00940000158182	ENSGT00940000160921	ENSGT00950000182836.a ##11	ENSGT00940000154800	ENSGT00940000164440	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768
Turkey	DUPLICATION
Turkey	MODERN SPECIES	11	CRLS1 (ENSMGAG00000007742)	MCM8 (ENSMGAG00000007701)	TRMT6 (ENSMGAG00000007678)	CHGB (ENSMGAG00000007670)	ENSMGAG00000007668	ENSMGAG00000007629	ENSMGAG00000007605	ENSMGAG00000007494	ENSMGAG00000019993	ENSMGAG00000021573	ENSMGAG00000005614 #25	ENSMGAG00000020688 #24	ENSMGAG00000005659 ##23	ENSMGAG00000005711	ENSMGAG00000021680	ENSMGAG00000022460 #22	ENSMGAG00000022438	ENSMGAG00000018947 #22	ENSMGAG00000022821	ENSMGAG00000005883	ENSMGAG00000005891	ENSMGAG00000005931	ENSMGAG00000005950	ENSMGAG00000006004	ENSMGAG00000006022	ENSMGAG00000006078	ENSMGAG00000019717	ENSMGAG00000006083	ENSMGAG00000006175	ENSMGAG00000006184	ENSMGAG00000006259
Turkey	MODERN SPECIES	11	TRMT6 (ENSMGAG00000007678)	CHGB (ENSMGAG00000007670)	ENSMGAG00000007668	ENSMGAG00000007629	ENSMGAG00000007605	ENSMGAG00000007494	ENSMGAG00000019993	ENSMGAG00000021573	ENSMGAG00000005614 #25	ENSMGAG00000020688 #24	ENSMGAG00000005659 ##23	ENSMGAG00000005711	ENSMGAG00000021680	ENSMGAG00000022460 #22	ENSMGAG00000022438	ENSMGAG00000018947 #22	ENSMGAG00000022821	ENSMGAG00000005883	ENSMGAG00000005891	ENSMGAG00000005931	ENSMGAG00000005950	ENSMGAG00000006004	ENSMGAG00000006022	ENSMGAG00000006078	ENSMGAG00000019717	ENSMGAG00000006083	ENSMGAG00000006175	ENSMGAG00000006184	ENSMGAG00000006259	ENSMGAG00000006275	ENSMGAG00000006281
Chicken	MODERN SPECIES	22	ENSGALG00010018520	MRPL2 (ENSGALG00010018556)	ENSGALG00010018560	ENSGALG00010018566	PTK7 (ENSGALG00010018576)	SRF (ENSGALG00010018587)	ENSGALG00010018598	XDH (ENSGALG00010018628)	ESF1 (ENSGALG00010018644)	ENSGALG00010018693	FLRT3 (ENSGALG00010018747)	ENSGALG00010020009	ENSGALG00010018857	SNRPB2 (ENSGALG00010019263)	CTAGE1 (ENSGALG00010019275)	NRXN1 (ENSGALG00010017272) #22	ENSGALG00010017295	FSHR (ENSGALG00010019997)	LHCGR (ENSGALG00010017301) ##23	GTF2A1L (ENSGALG00010017311) #24	STON1 (ENSGALG00010017326) #25	ENSGALG00010017350	EHD3 (ENSGALG00010017359)	CAPN14 (ENSGALG00010017369)	GALNT14 (ENSGALG00010017376)	CAPN13 (ENSGALG00010017447)	LBH (ENSGALG00010017485) ##11	YPEL5 (ENSGALG00010017493)	ANKRD9L (ENSGALG00010017511)	ALK (ENSGALG00010017563)	CLIP4 (ENSGALG00010017660)
Japanese quail	MODERN SPECIES	21	FANCL (ENSCJPG00005016555)	VRK2 (ENSCJPG00005016556)	CCDC85A (ENSCJPG00005016565)	EFEMP1 (ENSCJPG00005016569)	PNPT1 (ENSCJPG00005016570)	ENSCJPG00005016787	ENSCJPG00005000785	ENSCJPG00005000786	ENSCJPG00005000794	CFAP36 (ENSCJPG00005000800)	CCDC88A (ENSCJPG00005000821)	MTIF2 (ENSCJPG00005000879)	ENSCJPG00005000905	RPS27A (ENSCJPG00005000922)	ENSCJPG00005000929	NRXN1 (ENSCJPG00005001038) #22	ENSCJPG00005001174	FSHR (ENSCJPG00005001206)	LHCGR (ENSCJPG00005001245) ##23	GTF2A1L (ENSCJPG00005001252) #24	STON1 (ENSCJPG00005001259) #25	EHD3 (ENSCJPG00005001263)	CAPN14 (ENSCJPG00005001274)	GALNT14 (ENSCJPG00005001296)	CAPN13 (ENSCJPG00005001316)	LCLAT1 (ENSCJPG00005001334) ##11	LBH (ENSCJPG00005001339)	YPEL5 (ENSCJPG00005001342)	ENSCJPG00005001344	ALK (ENSCJPG00005001356)	CLIP4 (ENSCJPG00005001389)
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254
Golden eagle	DUPLICATION
Golden eagle	MODERN SPECIES	4	ENSACCG00020015264	SYNDIG1 (ENSACCG00020015314)	ENSACCG00020015327	DSTN (ENSACCG00020015353)	RRBP1 (ENSACCG00020015379)	SNX5 (ENSACCG00020015410)	MGME1 (ENSACCG00020015431)	OVOL2 (ENSACCG00020015449)	PET117 (ENSACCG00020015481)	BIRC5 (ENSACCG00020015492)	DZANK1 (ENSACCG00020015517)	POLR3F (ENSACCG00020015559)	SEC23B (ENSACCG00020015586)	DTD1 (ENSACCG00020015615)	ENSACCG00020015633 #22	ENSACCG00020015707 #22	ENSACCG00020015737	FSHR (ENSACCG00020015752)	LHCGR (ENSACCG00020015764) ##23	GTF2A1L (ENSACCG00020015791) #24	STON1 (ENSACCG00020015810) #25	PPP1R21 (ENSACCG00020015841) #26	FOXN2 (ENSACCG00020015867)	FBXO11 (ENSACCG00020015881) ##28	MSH6 (ENSACCG00020015946)	KCNK12 (ENSACCG00020015962) #29	MSH2 (ENSACCG00020015980)	EPCAM (ENSACCG00020011459)	SPDYA (ENSACCG00020011509)	TRMT61B (ENSACCG00020011548)	WDR43 (ENSACCG00020011569)
Golden eagle	MODERN SPECIES	4	CST7 (ENSACCG00020015242)	ENSACCG00020015264	SYNDIG1 (ENSACCG00020015314)	ENSACCG00020015327	DSTN (ENSACCG00020015353)	RRBP1 (ENSACCG00020015379)	SNX5 (ENSACCG00020015410)	MGME1 (ENSACCG00020015431)	OVOL2 (ENSACCG00020015449)	PET117 (ENSACCG00020015481)	BIRC5 (ENSACCG00020015492)	DZANK1 (ENSACCG00020015517)	POLR3F (ENSACCG00020015559)	SEC23B (ENSACCG00020015586)	DTD1 (ENSACCG00020015615)	ENSACCG00020015633 #22	ENSACCG00020015707 #22	ENSACCG00020015737	FSHR (ENSACCG00020015752)	LHCGR (ENSACCG00020015764) ##23	GTF2A1L (ENSACCG00020015791) #24	STON1 (ENSACCG00020015810) #25	PPP1R21 (ENSACCG00020015841) #26	FOXN2 (ENSACCG00020015867)	FBXO11 (ENSACCG00020015881) ##28	MSH6 (ENSACCG00020015946)	KCNK12 (ENSACCG00020015962) #29	MSH2 (ENSACCG00020015980)	EPCAM (ENSACCG00020011459)	SPDYA (ENSACCG00020011509)	TRMT61B (ENSACCG00020011548)
Kakapo	MODERN SPECIES	2	APMAP (ENSSHBG00005015055)	ENSSHBG00005015067	SYNDIG1 (ENSSHBG00005015073)	CST3 (ENSSHBG00005015078)	DSTN (ENSSHBG00005015085)	RRBP1 (ENSSHBG00005015114)	SNX5 (ENSSHBG00005015201)	MGME1 (ENSSHBG00005015217)	OVOL2 (ENSSHBG00005015243)	KAT14 (ENSSHBG00005015339)	BIRC5 (ENSSHBG00005015346)	DZANK1 (ENSSHBG00005015352)	POLR3F (ENSSHBG00005015359)	SEC23B (ENSSHBG00005015365)	DTD1 (ENSSHBG00005015380)	NRXN1 (ENSSHBG00005015393) #22	FSHR (ENSSHBG00005015407)	LHCGR (ENSSHBG00005015410) ##23	GTF2A1L (ENSSHBG00005015415) #24	STON1 (ENSSHBG00005015418) #25	PPP1R21 (ENSSHBG00005015420) #26	FOXN2 (ENSSHBG00005015431)	FBXO11 (ENSSHBG00005015436) ##28	MSH6 (ENSSHBG00005015441)	KCNK12 (ENSSHBG00005015444) #29	MSH2 (ENSSHBG00005015450)	EPCAM (ENSSHBG00005000860)	SPDYA (ENSSHBG00005010401)	TRMT61B (ENSSHBG00005010429)	WDR43 (ENSSHBG00005010451)	ENSSHBG00005010552
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254	ENSGT00390000002768
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254	ENSGT00390000002768
Flycatcher	MODERN SPECIES	21	ENSFALG00000013671	ENSFALG00000026638	DSTN (ENSFALG00000029095)	RRBP1 (ENSFALG00000007560)	SNX5 (ENSFALG00000007581)	MGME1 (ENSFALG00000007588)	OVOL2 (ENSFALG00000024504)	KAT14 (ENSFALG00000007603)	BIRC5 (ENSFALG00000028516)	DZANK1 (ENSFALG00000007607)	POLR3F (ENSFALG00000007623)	SEC23B (ENSFALG00000007639)	DTD1 (ENSFALG00000007665)	ENSFALG00000023727	ENSFALG00000028335	NRXN1 (ENSFALG00000011012) #22	FSHR (ENSFALG00000011021)	LHCGR (ENSFALG00000011041) ##23	GTF2A1L (ENSFALG00000011062) #24	STON1 (ENSFALG00000011065) #25	PPP1R21 (ENSFALG00000011088) #26	FOXN2 (ENSFALG00000025970)	FBXO11 (ENSFALG00000011118) ##28	MSH6 (ENSFALG00000011127)	KCNK12 (ENSFALG00000011138) #29	MSH2 (ENSFALG00000011151)	EPCAM (ENSFALG00000027848)	SPDYA (ENSFALG00000011186)	TRMT61B (ENSFALG00000011196)	WDR43 (ENSFALG00000011213)	PCARE (ENSFALG00000025802)
Passeriformes_g	ANCESTRAL SPECIES	45	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254	ENSGT00390000002768
Medium ground finch	MODERN SPECIES	108	APMAP (ENSGFOG00000002861)	CST7 (ENSGFOG00000002907)	SYNDIG1 (ENSGFOG00000002974)	CST3 (ENSGFOG00000002991)	DSTN (ENSGFOG00000003071)	RRBP1 (ENSGFOG00000003113)	ENSGFOG00000003221	ENSGFOG00000003230	MGME1 (ENSGFOG00000003246)	OVOL2 (ENSGFOG00000003259)	KAT14 (ENSGFOG00000003273)	DZANK1 (ENSGFOG00000003297)	POLR3F (ENSGFOG00000003349)	SEC23B (ENSGFOG00000003379)	DTD1 (ENSGFOG00000003463)	NRXN1 (ENSGFOG00000004075) #22	FSHR (ENSGFOG00000004366)	LHCGR (ENSGFOG00000004407) ##23	GTF2A1L (ENSGFOG00000004470) #24	STON1 (ENSGFOG00000004497) #25	PPP1R21 (ENSGFOG00000004516) #26	FOXN2 (ENSGFOG00000004539)	FBXO11 (ENSGFOG00000004559) ##28	MSH6 (ENSGFOG00000004595)	ENSGFOG00000004620
Passeroidea	ANCESTRAL SPECIES	34	ENSGT00950000183147.B	ENSGT00940000154755	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000006916.c	ENSGT00960000190962	ENSGT00940000153431.b	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00940000154524.b	ENSGT00940000154239.b	ENSGT00390000004254	ENSGT00390000002768
Zebra finch	MODERN SPECIES	23	SYNDIG1 (ENSTGUG00000006051)	ENSTGUG00000006006	DSTN (ENSTGUG00000005998)	RRBP1 (ENSTGUG00000005958)	SNX5 (ENSTGUG00000005916)	MGME1 (ENSTGUG00000005912)	OVOL2 (ENSTGUG00000005909)	PET117 (ENSTGUG00000027932)	KAT14 (ENSTGUG00000005899)	BIRC5 (ENSTGUG00000005891)	DZANK1 (ENSTGUG00000005864)	POLR3F (ENSTGUG00000005839)	SEC23B (ENSTGUG00000005787)	ENSTGUG00000029617	DTD1 (ENSTGUG00000005772)	NRXN1 (ENSTGUG00000005731) #22	FSHR (ENSTGUG00000005697)	LHCGR (ENSTGUG00000020079) ##23	GTF2A1L (ENSTGUG00000005655) #24	STON1 (ENSTGUG00000019303) #25	PPP1R21 (ENSTGUG00000005626) #26	FOXN2 (ENSTGUG00000022926)	FBXO11 (ENSTGUG00000005572) ##28	MSH6 (ENSTGUG00000005559)	KCNK12 (ENSTGUG00000005557) #29	MSH2 (ENSTGUG00000005502)	EPCAM (ENSTGUG00000005491)	SPDYA (ENSTGUG00000005486)	TRMT61B (ENSTGUG00000005482)	WDR43 (ENSTGUG00000005464)	PCARE (ENSTGUG00000019778)
Common canary	DUPLICATION
Common canary	MODERN SPECIES	23	SYNDIG1 (ENSSCAG00000012241)	CST3 (ENSSCAG00000012232)	DSTN (ENSSCAG00000012226)	RRBP1 (ENSSCAG00000012207)	SNX5 (ENSSCAG00000012191)	MGME1 (ENSSCAG00000012184)	OVOL2 (ENSSCAG00000012177)	ENSSCAG00000012175	KAT14 (ENSSCAG00000012168)	BIRC5 (ENSSCAG00000012163)	DZANK1 (ENSSCAG00000012121)	POLR3F (ENSSCAG00000012106)	SEC23B (ENSSCAG00000012095)	ENSSCAG00000012091	DTD1 (ENSSCAG00000012086)	ENSSCAG00000012078 #22	ENSSCAG00000012073	NRXN1 (ENSSCAG00000012065) #22	ENSSCAG00000012055 #22	FSHR (ENSSCAG00000012045)	LHCGR (ENSSCAG00000012040) ##23	GTF2A1L (ENSSCAG00000012036) #24	STON1 (ENSSCAG00000012033) #25	PPP1R21 (ENSSCAG00000012017) #26	FOXN2 (ENSSCAG00000012012)	FBXO11 (ENSSCAG00000012002) ##28	MSH6 (ENSSCAG00000011999)	KCNK12 (ENSSCAG00000011994) #29	MSH2 (ENSSCAG00000011988)	EPCAM (ENSSCAG00000011961)	SPDYA (ENSSCAG00000011939)
Common canary	MODERN SPECIES	23	RRBP1 (ENSSCAG00000012207)	SNX5 (ENSSCAG00000012191)	MGME1 (ENSSCAG00000012184)	OVOL2 (ENSSCAG00000012177)	ENSSCAG00000012175	KAT14 (ENSSCAG00000012168)	BIRC5 (ENSSCAG00000012163)	DZANK1 (ENSSCAG00000012121)	POLR3F (ENSSCAG00000012106)	SEC23B (ENSSCAG00000012095)	ENSSCAG00000012091	DTD1 (ENSSCAG00000012086)	ENSSCAG00000012078 #22	ENSSCAG00000012073	NRXN1 (ENSSCAG00000012065) #22	ENSSCAG00000012055 #22	FSHR (ENSSCAG00000012045)	LHCGR (ENSSCAG00000012040) ##23	GTF2A1L (ENSSCAG00000012036) #24	STON1 (ENSSCAG00000012033) #25	PPP1R21 (ENSSCAG00000012017) #26	FOXN2 (ENSSCAG00000012012)	FBXO11 (ENSSCAG00000012002) ##28	MSH6 (ENSSCAG00000011999)	KCNK12 (ENSSCAG00000011994) #29	MSH2 (ENSSCAG00000011988)	EPCAM (ENSSCAG00000011961)	SPDYA (ENSSCAG00000011939)	TRMT61B (ENSSCAG00000011923)	WDR43 (ENSSCAG00000011889)
Common canary	MODERN SPECIES	23	DSTN (ENSSCAG00000012226)	RRBP1 (ENSSCAG00000012207)	SNX5 (ENSSCAG00000012191)	MGME1 (ENSSCAG00000012184)	OVOL2 (ENSSCAG00000012177)	ENSSCAG00000012175	KAT14 (ENSSCAG00000012168)	BIRC5 (ENSSCAG00000012163)	DZANK1 (ENSSCAG00000012121)	POLR3F (ENSSCAG00000012106)	SEC23B (ENSSCAG00000012095)	ENSSCAG00000012091	DTD1 (ENSSCAG00000012086)	ENSSCAG00000012078 #22	ENSSCAG00000012073	NRXN1 (ENSSCAG00000012065) #22	ENSSCAG00000012055 #22	FSHR (ENSSCAG00000012045)	LHCGR (ENSSCAG00000012040) ##23	GTF2A1L (ENSSCAG00000012036) #24	STON1 (ENSSCAG00000012033) #25	PPP1R21 (ENSSCAG00000012017) #26	FOXN2 (ENSSCAG00000012012)	FBXO11 (ENSSCAG00000012002) ##28	MSH6 (ENSSCAG00000011999)	KCNK12 (ENSSCAG00000011994) #29	MSH2 (ENSSCAG00000011988)	EPCAM (ENSSCAG00000011961)	SPDYA (ENSSCAG00000011939)	TRMT61B (ENSSCAG00000011923)	WDR43 (ENSSCAG00000011889)
Great tit	DUPLICATION
Great tit	MODERN SPECIES	22	CST7 (ENSPMJG00000004127)	SYNDIG1 (ENSPMJG00000004131)	CST3 (ENSPMJG00000004135)	DSTN (ENSPMJG00000004137)	RRBP1 (ENSPMJG00000004155)	SNX5 (ENSPMJG00000004188)	MGME1 (ENSPMJG00000004199)	OVOL2 (ENSPMJG00000004201)	ENSPMJG00000004206	KAT14 (ENSPMJG00000004207)	ENSPMJG00000004213	DZANK1 (ENSPMJG00000004216)	POLR3F (ENSPMJG00000004232)	SEC23B (ENSPMJG00000004234)	DTD1 (ENSPMJG00000004259)	ENSPMJG00000004278 #22	ENSPMJG00000004301 #22	ENSPMJG00000004306 #22	FSHR (ENSPMJG00000004316)	LHCGR (ENSPMJG00000004330) ##23	GTF2A1L (ENSPMJG00000004333) #24	STON1 (ENSPMJG00000004337) #25	PPP1R21 (ENSPMJG00000004338) #26	FOXN2 (ENSPMJG00000004351)	FBXO11 (ENSPMJG00000004357) ##28	MSH6 (ENSPMJG00000004361)	KCNK12 (ENSPMJG00000004365) #29	MSH2 (ENSPMJG00000004366)	EPCAM (ENSPMJG00000004378)	SPDYA (ENSPMJG00000004379)	TRMT61B (ENSPMJG00000004381)
Great tit	DUPLICATION
Great tit	MODERN SPECIES	22	SYNDIG1 (ENSPMJG00000004131)	CST3 (ENSPMJG00000004135)	DSTN (ENSPMJG00000004137)	RRBP1 (ENSPMJG00000004155)	SNX5 (ENSPMJG00000004188)	MGME1 (ENSPMJG00000004199)	OVOL2 (ENSPMJG00000004201)	ENSPMJG00000004206	KAT14 (ENSPMJG00000004207)	ENSPMJG00000004213	DZANK1 (ENSPMJG00000004216)	POLR3F (ENSPMJG00000004232)	SEC23B (ENSPMJG00000004234)	DTD1 (ENSPMJG00000004259)	ENSPMJG00000004278 #22	ENSPMJG00000004301 #22	ENSPMJG00000004306 #22	FSHR (ENSPMJG00000004316)	LHCGR (ENSPMJG00000004330) ##23	GTF2A1L (ENSPMJG00000004333) #24	STON1 (ENSPMJG00000004337) #25	PPP1R21 (ENSPMJG00000004338) #26	FOXN2 (ENSPMJG00000004351)	FBXO11 (ENSPMJG00000004357) ##28	MSH6 (ENSPMJG00000004361)	KCNK12 (ENSPMJG00000004365) #29	MSH2 (ENSPMJG00000004366)	EPCAM (ENSPMJG00000004378)	SPDYA (ENSPMJG00000004379)	TRMT61B (ENSPMJG00000004381)	WDR43 (ENSPMJG00000004384)
Great tit	MODERN SPECIES	22	CST3 (ENSPMJG00000004135)	DSTN (ENSPMJG00000004137)	RRBP1 (ENSPMJG00000004155)	SNX5 (ENSPMJG00000004188)	MGME1 (ENSPMJG00000004199)	OVOL2 (ENSPMJG00000004201)	ENSPMJG00000004206	KAT14 (ENSPMJG00000004207)	ENSPMJG00000004213	DZANK1 (ENSPMJG00000004216)	POLR3F (ENSPMJG00000004232)	SEC23B (ENSPMJG00000004234)	DTD1 (ENSPMJG00000004259)	ENSPMJG00000004278 #22	ENSPMJG00000004301 #22	ENSPMJG00000004306 #22	FSHR (ENSPMJG00000004316)	LHCGR (ENSPMJG00000004330) ##23	GTF2A1L (ENSPMJG00000004333) #24	STON1 (ENSPMJG00000004337) #25	PPP1R21 (ENSPMJG00000004338) #26	FOXN2 (ENSPMJG00000004351)	FBXO11 (ENSPMJG00000004357) ##28	MSH6 (ENSPMJG00000004361)	KCNK12 (ENSPMJG00000004365) #29	MSH2 (ENSPMJG00000004366)	EPCAM (ENSPMJG00000004378)	SPDYA (ENSPMJG00000004379)	TRMT61B (ENSPMJG00000004381)	WDR43 (ENSPMJG00000004384)	PCARE (ENSPMJG00000004394)
Australian saltwater crocodile	DUPLICATION
Australian saltwater crocodile	MODERN SPECIES	60	RPS27A (ENSCPRG00005013955)	CLHC1 (ENSCPRG00005013963)	RTN4 (ENSCPRG00005013967)	EML6 (ENSCPRG00005013983)	ENSCPRG00005014019	SPTBN1 (ENSCPRG00005014032)	C2orf73 (ENSCPRG00005014087)	ACYP2 (ENSCPRG00005014089)	PSME4 (ENSCPRG00005014147) #20	GPR75 (ENSCPRG00005014333)	TLR15 (ENSCPRG00005014339)	ERLEC1 (ENSCPRG00005014344) #21	ASB3 (ENSCPRG00005014363)	CHAC2 (ENSCPRG00005014372)	ENSCPRG00005014410	ENSCPRG00005014415 #22	ENSCPRG00005014446	NRXN1 (ENSCPRG00005014464) #22	ENSCPRG00005014512	FSHR (ENSCPRG00005014530)	GTF2A1L (ENSCPRG00005014546) #24	STON1 (ENSCPRG00005014552) #25	PPP1R21 (ENSCPRG00005014556) #26	FOXN2 (ENSCPRG00005014578)	FBXO11 (ENSCPRG00005014585) ##28	MSH6 (ENSCPRG00005014589)	KCNK12 (ENSCPRG00005014617) #29	ENSCPRG00005014618	MSH2 (ENSCPRG00005014621)	EPCAM (ENSCPRG00005014626)	CALM2 (ENSCPRG00005014636)
Australian saltwater crocodile	MODERN SPECIES	60	RTN4 (ENSCPRG00005013967)	EML6 (ENSCPRG00005013983)	ENSCPRG00005014019	SPTBN1 (ENSCPRG00005014032)	C2orf73 (ENSCPRG00005014087)	ACYP2 (ENSCPRG00005014089)	PSME4 (ENSCPRG00005014147) #20	GPR75 (ENSCPRG00005014333)	TLR15 (ENSCPRG00005014339)	ERLEC1 (ENSCPRG00005014344) #21	ASB3 (ENSCPRG00005014363)	CHAC2 (ENSCPRG00005014372)	ENSCPRG00005014410	ENSCPRG00005014415 #22	ENSCPRG00005014446	NRXN1 (ENSCPRG00005014464) #22	ENSCPRG00005014512	FSHR (ENSCPRG00005014530)	GTF2A1L (ENSCPRG00005014546) #24	STON1 (ENSCPRG00005014552) #25	PPP1R21 (ENSCPRG00005014556) #26	FOXN2 (ENSCPRG00005014578)	FBXO11 (ENSCPRG00005014585) ##28	MSH6 (ENSCPRG00005014589)	KCNK12 (ENSCPRG00005014617) #29	ENSCPRG00005014618	MSH2 (ENSCPRG00005014621)	EPCAM (ENSCPRG00005014626)	CALM2 (ENSCPRG00005014636)	STPG4 (ENSCPRG00005014639)	TTC7A (ENSCPRG00005014677)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01030000234712.a	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1066														ENSSPUG00000016734 #22	ENSSPUG00000016751 #22	ENSSPUG00000016775 #22
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1066																ENSSPUG00000016734 #22	ENSSPUG00000016751 #22	ENSSPUG00000016775 #22
tuatara	MODERN SPECIES	1066															ENSSPUG00000016734 #22	ENSSPUG00000016751 #22	ENSSPUG00000016775 #22
Episquamata	ANCESTRAL SPECIES		ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01080000257342.H.h	ENSGT01030000234712.a	ENSGT00940000163630.Q	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Laterata	ANCESTRAL SPECIES	4	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT01080000257342.H.h	ENSGT01030000234712.a	ENSGT00990000204784	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793	ENSGT01100000263540.A.a
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	7	ENSSMRG00000014793	ENSSMRG00000014794	RTN4 (ENSSMRG00000014796)	EML6 (ENSSMRG00000014798)	SPTBN1 (ENSSMRG00000014804)	C2orf73 (ENSSMRG00000014807)	ACYP2 (ENSSMRG00000014808)	ENSSMRG00000014809	PSME4 (ENSSMRG00000014811) #20	GPR75 (ENSSMRG00000014814)	ENSSMRG00000014815	ERLEC1 (ENSSMRG00000014818) #21	ASB3 (ENSSMRG00000014822)	CHAC2 (ENSSMRG00000014825)	ENSSMRG00000014829	ENSSMRG00000014830 #22	NRXN1 (ENSSMRG00000014832) #22	ENSSMRG00000014889	FSHR (ENSSMRG00000014891)	GTF2A1L (ENSSMRG00000014894) #24	ENSSMRG00000014895	STON1 (ENSSMRG00000014896) #25	PPP1R21 (ENSSMRG00000014897) #26	FOXN2 (ENSSMRG00000014899)	FBXO11 (ENSSMRG00000014902) ##28	MSH6 (ENSSMRG00000014903)	ENSSMRG00000014904	KCNK12 (ENSSMRG00000014905) #29	MSH2 (ENSSMRG00000014906)	EPCAM (ENSSMRG00000014907)	APMAP (ENSSMRG00000014908)
Argentine black and white tegu	MODERN SPECIES	7	ENSSMRG00000014794	RTN4 (ENSSMRG00000014796)	EML6 (ENSSMRG00000014798)	SPTBN1 (ENSSMRG00000014804)	C2orf73 (ENSSMRG00000014807)	ACYP2 (ENSSMRG00000014808)	ENSSMRG00000014809	PSME4 (ENSSMRG00000014811) #20	GPR75 (ENSSMRG00000014814)	ENSSMRG00000014815	ERLEC1 (ENSSMRG00000014818) #21	ASB3 (ENSSMRG00000014822)	CHAC2 (ENSSMRG00000014825)	ENSSMRG00000014829	ENSSMRG00000014830 #22	NRXN1 (ENSSMRG00000014832) #22	ENSSMRG00000014889	FSHR (ENSSMRG00000014891)	GTF2A1L (ENSSMRG00000014894) #24	ENSSMRG00000014895	STON1 (ENSSMRG00000014896) #25	PPP1R21 (ENSSMRG00000014897) #26	FOXN2 (ENSSMRG00000014899)	FBXO11 (ENSSMRG00000014902) ##28	MSH6 (ENSSMRG00000014903)	ENSSMRG00000014904	KCNK12 (ENSSMRG00000014905) #29	MSH2 (ENSSMRG00000014906)	EPCAM (ENSSMRG00000014907)	APMAP (ENSSMRG00000014908)	ACSS1 (ENSSMRG00000014909)
Common wall lizard	DUPLICATION
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002449	CLHC1 (ENSPMRG00000002439)	ENSPMRG00000002426	EML6 (ENSPMRG00000002255)	SPTBN1 (ENSPMRG00000002200)	C2orf73 (ENSPMRG00000002186)	ENSPMRG00000002182	ACYP2 (ENSPMRG00000002171)	PSME4 (ENSPMRG00000002084) #20	GPR75 (ENSPMRG00000002052)	ENSPMRG00000002045	ERLEC1 (ENSPMRG00000002005) #21	CHAC2 (ENSPMRG00000001987)	ENSPMRG00000001969	ENSPMRG00000001953	ENSPMRG00000001947 #22	NRXN1 (ENSPMRG00000001894) #22	ENSPMRG00000001868	ENSPMRG00000001744	FSHR (ENSPMRG00000001703)	GTF2A1L (ENSPMRG00000001686) #24	STON1 (ENSPMRG00000001676) #25	FOXN2 (ENSPMRG00000001669)	FBXO11 (ENSPMRG00000001473) ##28	MSH6 (ENSPMRG00000001653)	KCNK12 (ENSPMRG00000001414) #29	MSH2 (ENSPMRG00000001394)	EPCAM (ENSPMRG00000001376)	APMAP (ENSPMRG00000001359)	ENSPMRG00000001336	ENSPMRG00000001348
Common wall lizard	MODERN SPECIES	11	CLHC1 (ENSPMRG00000002439)	ENSPMRG00000002426	EML6 (ENSPMRG00000002255)	SPTBN1 (ENSPMRG00000002200)	C2orf73 (ENSPMRG00000002186)	ENSPMRG00000002182	ACYP2 (ENSPMRG00000002171)	PSME4 (ENSPMRG00000002084) #20	GPR75 (ENSPMRG00000002052)	ENSPMRG00000002045	ERLEC1 (ENSPMRG00000002005) #21	CHAC2 (ENSPMRG00000001987)	ENSPMRG00000001969	ENSPMRG00000001953	ENSPMRG00000001947 #22	NRXN1 (ENSPMRG00000001894) #22	ENSPMRG00000001868	ENSPMRG00000001744	FSHR (ENSPMRG00000001703)	GTF2A1L (ENSPMRG00000001686) #24	STON1 (ENSPMRG00000001676) #25	FOXN2 (ENSPMRG00000001669)	FBXO11 (ENSPMRG00000001473) ##28	MSH6 (ENSPMRG00000001653)	KCNK12 (ENSPMRG00000001414) #29	MSH2 (ENSPMRG00000001394)	EPCAM (ENSPMRG00000001376)	APMAP (ENSPMRG00000001359)	ENSPMRG00000001336	ENSPMRG00000001348	VSX1 (ENSPMRG00000001309)
Toxicofera	DUPLICATION
Toxicofera	DUPLICATION
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.le.a #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.le.a #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b.le.a #22
Blue-lipped sea krait	MODERN SPECIES	3364																ENSLLTG00000016871 #22
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000154292.a.b.me #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550
Elapidae	ANCESTRAL SPECIES		ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000154292.a.b.me #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00940000165870	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000163749	ENSGT00940000154292.a.b.me #22	ENSGT00940000158952	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118.d	ENSGT00940000159118.c	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867.l	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550.g
Blue-lipped sea krait	MODERN SPECIES	4411																ENSLLTG00000013199 #22
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00900000141103	ENSGT00940000157820.a.b	ENSGT00940000165870	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00990000212567	ENSGT00940000163749	ENSGT00940000154292.a.b.me #22	ENSGT00940000158952	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118.d	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867.l	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550.g
Eastern brown snake	MODERN SPECIES	5	ENSPTXG00000008391	MTIF2 (ENSPTXG00000008389)	ENSPTXG00000008388	CLHC1 (ENSPTXG00000008387)	ENSPTXG00000008386	EML6 (ENSPTXG00000008383)	SPTBN1 (ENSPTXG00000008380)	ENSPTXG00000008378	ACYP2 (ENSPTXG00000008377)	PSME4 (ENSPTXG00000008322) #20	GPR75 (ENSPTXG00000008318)	ENSPTXG00000008316	ERLEC1 (ENSPTXG00000008315) #21	CHAC2 (ENSPTXG00000008314)	ASB3 (ENSPTXG00000008204)	ENSPTXG00000008200 #22	NRXN1 (ENSPTXG00000008197) #22	ENSPTXG00000008195	ENSPTXG00000008192	ENSPTXG00000008190 #22	FSHR (ENSPTXG00000008187)	ENSPTXG00000008185	STON1 (ENSPTXG00000008183) #25	PPP1R21 (ENSPTXG00000008181) #26	FOXN2 (ENSPTXG00000008180)	FBXO11 (ENSPTXG00000008178) ##28	MSH6 (ENSPTXG00000008177)	ENSPTXG00000008175	KCNK12 (ENSPTXG00000008174) #29	MSH2 (ENSPTXG00000008173)	EPCAM (ENSPTXG00000008171)
Indian cobra	MODERN SPECIES		CCDC88A (ENSNNAG00000002738)	ENSNNAG00000002759	MTIF2 (ENSNNAG00000002775)	RPS27A (ENSNNAG00000002816)	CLHC1 (ENSNNAG00000002825)	ENSNNAG00000002839	EML6 (ENSNNAG00000002875)	SPTBN1 (ENSNNAG00000003427)	ACYP2 (ENSNNAG00000009013)	PSME4 (ENSNNAG00000009123) #20	GPR75 (ENSNNAG00000010274)	ENSNNAG00000000155	ERLEC1 (ENSNNAG00000000158) #21	ASB3 (ENSNNAG00000000165)	CHAC2 (ENSNNAG00000000173)	ENSNNAG00000000177 #22	NRXN1 (ENSNNAG00000000184) #22	ENSNNAG00000000193	FSHR (ENSNNAG00000000200)	GTF2A1L (ENSNNAG00000000205) #24	PPP1R21 (ENSNNAG00000000216) #26	STON1 (ENSNNAG00000000225) #25	FOXN2 (ENSNNAG00000000230)	FBXO11 (ENSNNAG00000000249) ##28	MSH6 (ENSNNAG00000000316)	KCNK12 (ENSNNAG00000000330) #29	MSH2 (ENSNNAG00000000347)	EPCAM (ENSNNAG00000000379)	APMAP (ENSNNAG00000000397)	ACSS1 (ENSNNAG00000000429)	VSX1 (ENSNNAG00000000488)
Lizard	MODERN SPECIES					RTN4 (ENSACAG00000011654)	EML6 (ENSACAG00000011806)	SPTBN1 (ENSACAG00000011972)	ENSACAG00000042646	C2orf73 (ENSACAG00000028381)	ACYP2 (ENSACAG00000012326)	PSME4 (ENSACAG00000012331) #20	ENSACAG00000025732	ERLEC1 (ENSACAG00000012393) #21	CHAC2 (ENSACAG00000040737)	ASB3 (ENSACAG00000012429)	ENSACAG00000040936	ENSACAG00000001538 #22	NRXN1 (ENSACAG00000001550) #22	ENSACAG00000037380	ENSACAG00000016244	FSHR (ENSACAG00000016258)	ENSACAG00000043415	ENSACAG00000016383 #24	ENSACAG00000004051	ENSACAG00000013487	ENSACAG00000013449	PAPOLG (ENSACAG00000015048)	ENSACAG00000044226	ENSACAG00000037341	ENSACAG00000015159	ENSACAG00000037435	ENSACAG00000042761
Toxicofera	ANCESTRAL SPECIES		ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000154292.a.b.me #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Lizard	MODERN SPECIES				RTN4 (ENSACAG00000011654)	EML6 (ENSACAG00000011806)	SPTBN1 (ENSACAG00000011972)	ENSACAG00000042646	C2orf73 (ENSACAG00000028381)	ACYP2 (ENSACAG00000012326)	PSME4 (ENSACAG00000012331) #20	ENSACAG00000025732	ERLEC1 (ENSACAG00000012393) #21	CHAC2 (ENSACAG00000040737)	ASB3 (ENSACAG00000012429)	ENSACAG00000040936	ENSACAG00000001538 #22	NRXN1 (ENSACAG00000001550) #22	ENSACAG00000037380	ENSACAG00000016244	FSHR (ENSACAG00000016258)	ENSACAG00000043415	ENSACAG00000016383 #24	ENSACAG00000004051	ENSACAG00000013487	ENSACAG00000013449	PAPOLG (ENSACAG00000015048)	ENSACAG00000044226	ENSACAG00000037341	ENSACAG00000015159	ENSACAG00000037435	ENSACAG00000042761	ENSACAG00000039824
Elapidae	ANCESTRAL SPECIES		ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152.a	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000154292.a.b.me #22	ENSGT00940000163749	ENSGT00940000158952	ENSGT00940000163055 #24	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550	ENSGT00940000160793
Indian cobra	MODERN SPECIES		ENSNNAG00000002759	MTIF2 (ENSNNAG00000002775)	RPS27A (ENSNNAG00000002816)	CLHC1 (ENSNNAG00000002825)	ENSNNAG00000002839	EML6 (ENSNNAG00000002875)	SPTBN1 (ENSNNAG00000003427)	ACYP2 (ENSNNAG00000009013)	PSME4 (ENSNNAG00000009123) #20	GPR75 (ENSNNAG00000010274)	ENSNNAG00000000155	ERLEC1 (ENSNNAG00000000158) #21	ASB3 (ENSNNAG00000000165)	CHAC2 (ENSNNAG00000000173)	ENSNNAG00000000177 #22	NRXN1 (ENSNNAG00000000184) #22	ENSNNAG00000000193	FSHR (ENSNNAG00000000200)	GTF2A1L (ENSNNAG00000000205) #24	PPP1R21 (ENSNNAG00000000216) #26	STON1 (ENSNNAG00000000225) #25	FOXN2 (ENSNNAG00000000230)	FBXO11 (ENSNNAG00000000249) ##28	MSH6 (ENSNNAG00000000316)	KCNK12 (ENSNNAG00000000330) #29	MSH2 (ENSNNAG00000000347)	EPCAM (ENSNNAG00000000379)	APMAP (ENSNNAG00000000397)	ACSS1 (ENSNNAG00000000429)	VSX1 (ENSNNAG00000000488)	ENTPD6 (ENSNNAG00000000515)
Elapidae_a	ANCESTRAL SPECIES	2	ENSGT00940000165870	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00940000163749	ENSGT00940000154292.a.b.me #22	ENSGT00940000158952	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118.d	ENSGT00940000159118.c	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867.l	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550.g	ENSGT00940000158550.h	ENSGT00940000160793
Blue-lipped sea krait	MODERN SPECIES	7949																ENSLLTG00000005782 #22
Acanthophiinae	ANCESTRAL SPECIES	3	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT01030000237115	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00940000156323	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b.le.b #22	ENSGT00990000212567	ENSGT00940000163749	ENSGT00940000154292.a.b.me #22	ENSGT00940000158952	ENSGT00960000192401	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118.d	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867.l	ENSGT00390000018245.c	ENSGT00440000039984.a	ENSGT00940000158550.g	ENSGT00940000158550.h	ENSGT00940000160793	ENSGT01100000263540.A.a
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	3															ENSNSUG00000016450 #22	ENSNSUG00000016448 #22	ENSNSUG00000016445	ENSNSUG00000016441	FSHR (ENSNSUG00000016438)	ENSNSUG00000016437	STON1 (ENSNSUG00000016435) #25	PPP1R21 (ENSNSUG00000016381) #26	FOXN2 (ENSNSUG00000016380)	FBXO11 (ENSNSUG00000016378) ##28	MSH6 (ENSNSUG00000016377)	KCNK12 (ENSNSUG00000016376) #29	MSH2 (ENSNSUG00000016250)	EPCAM (ENSNSUG00000016245)	APMAP (ENSNSUG00000016243)	ENSNSUG00000016241	ENSNSUG00000016240
Mainland tiger snake	MODERN SPECIES	3																ENSNSUG00000016450 #22	ENSNSUG00000016448 #22	ENSNSUG00000016445	ENSNSUG00000016441	FSHR (ENSNSUG00000016438)	ENSNSUG00000016437	STON1 (ENSNSUG00000016435) #25	PPP1R21 (ENSNSUG00000016381) #26	FOXN2 (ENSNSUG00000016380)	FBXO11 (ENSNSUG00000016378) ##28	MSH6 (ENSNSUG00000016377)	KCNK12 (ENSNSUG00000016376) #29	MSH2 (ENSNSUG00000016250)	EPCAM (ENSNSUG00000016245)	APMAP (ENSNSUG00000016243)	ENSNSUG00000016241
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	5	ENSPTXG00000008386	EML6 (ENSPTXG00000008383)	SPTBN1 (ENSPTXG00000008380)	ENSPTXG00000008378	ACYP2 (ENSPTXG00000008377)	PSME4 (ENSPTXG00000008322) #20	GPR75 (ENSPTXG00000008318)	ENSPTXG00000008316	ERLEC1 (ENSPTXG00000008315) #21	CHAC2 (ENSPTXG00000008314)	ASB3 (ENSPTXG00000008204)	ENSPTXG00000008200 #22	NRXN1 (ENSPTXG00000008197) #22	ENSPTXG00000008195	ENSPTXG00000008192	ENSPTXG00000008190 #22	FSHR (ENSPTXG00000008187)	ENSPTXG00000008185	STON1 (ENSPTXG00000008183) #25	PPP1R21 (ENSPTXG00000008181) #26	FOXN2 (ENSPTXG00000008180)	FBXO11 (ENSPTXG00000008178) ##28	MSH6 (ENSPTXG00000008177)	ENSPTXG00000008175	KCNK12 (ENSPTXG00000008174) #29	MSH2 (ENSPTXG00000008173)	EPCAM (ENSPTXG00000008171)	APMAP (ENSPTXG00000008170)	ACSS1 (ENSPTXG00000008168)	ENSPTXG00000008166	VSX1 (ENSPTXG00000008164)
Eastern brown snake	MODERN SPECIES	5	MTIF2 (ENSPTXG00000008389)	ENSPTXG00000008388	CLHC1 (ENSPTXG00000008387)	ENSPTXG00000008386	EML6 (ENSPTXG00000008383)	SPTBN1 (ENSPTXG00000008380)	ENSPTXG00000008378	ACYP2 (ENSPTXG00000008377)	PSME4 (ENSPTXG00000008322) #20	GPR75 (ENSPTXG00000008318)	ENSPTXG00000008316	ERLEC1 (ENSPTXG00000008315) #21	CHAC2 (ENSPTXG00000008314)	ASB3 (ENSPTXG00000008204)	ENSPTXG00000008200 #22	NRXN1 (ENSPTXG00000008197) #22	ENSPTXG00000008195	ENSPTXG00000008192	ENSPTXG00000008190 #22	FSHR (ENSPTXG00000008187)	ENSPTXG00000008185	STON1 (ENSPTXG00000008183) #25	PPP1R21 (ENSPTXG00000008181) #26	FOXN2 (ENSPTXG00000008180)	FBXO11 (ENSPTXG00000008178) ##28	MSH6 (ENSPTXG00000008177)	ENSPTXG00000008175	KCNK12 (ENSPTXG00000008174) #29	MSH2 (ENSPTXG00000008173)	EPCAM (ENSPTXG00000008171)	APMAP (ENSPTXG00000008170)
Anura	ANCESTRAL SPECIES	16	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568.b	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433 #20	ENSGT00390000007723	ENSGT00530000063603.B #21	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000154292.a.b #22	ENSGT00940000158952	ENSGT00940000157364.C ##23	ENSGT00940000163055 #24	ENSGT00940000158817 #25	ENSGT00390000006820 #26	ENSGT00940000159118	ENSGT00530000063425.a.b ##28	ENSGT00550000075024	ENSGT00940000161424 #29	ENSGT00550000074867	ENSGT00390000018245	ENSGT00390000005524	ENSGT00950000182980.a.a	ENSGT00940000158474	ENSGT00390000002237
Frog	MODERN SPECIES	5	mtif2 (ENSXETG00000032249)	rps27a (ENSXETG00000004519)	clhc1 (ENSXETG00000032814)	rtn4 (ENSXETG00000004521)	eml6 (ENSXETG00000015159)	sptbn1 (ENSXETG00000029995)	c2orf73 (ENSXETG00000015189)	acyp2 (ENSXETG00000027759)	atp12a-like (ENSXETG00000015190)	ENSXETG00000042312 ##30	psme4 (ENSXETG00000015195) #20	gpr75 (ENSXETG00000045730)	erlec1 (ENSXETG00000015197) #21	chac2 (ENSXETG00000015198)	asb3 (ENSXETG00000015199)	nrxn1 (ENSXETG00000018835) #22	ENSXETG00000046661	fshr (ENSXETG00000025827)	lhcgr (ENSXETG00000022663) ##23	gtf2a1l (ENSXETG00000022658) #24	ston1 (ENSXETG00000034496) #25	ppp1r21 (ENSXETG00000022652) #26	foxn2 (ENSXETG00000045985)	fbxo11 (ENSXETG00000022644) ##28	msh6 (ENSXETG00000022635)	kcnk12 (ENSXETG00000022624) #29	msh2 (ENSXETG00000022615)	epcam (ENSXETG00000022614)	ENSXETG00000039390	calm2 (ENSXETG00000015713)	stpg4 (ENSXETG00000036736)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000005606	SPTBN1 (ENSLLEG00000005643)	ENSLLEG00000006055	C2orf73 (ENSLLEG00000006067)	ACYP2 (ENSLLEG00000006098)	PSME4 (ENSLLEG00000006224) #20	GPR75 (ENSLLEG00000007287)	ERLEC1 (ENSLLEG00000007319) #21	CHAC2 (ENSLLEG00000007456)	ASB3 (ENSLLEG00000007484)	ENSLLEG00000007577	ENSLLEG00000007592	ENSLLEG00000007609	ENSLLEG00000007620	ENSLLEG00000007631 #22	NRXN1 (ENSLLEG00000007675) #22	ENSLLEG00000007829	ENSLLEG00000007845	ENSLLEG00000007885	ENSLLEG00000008101	FSHR (ENSLLEG00000008142)	LHCGR (ENSLLEG00000008344) ##23	GTF2A1L (ENSLLEG00000008495) #24	STON1 (ENSLLEG00000008577) #25	PPP1R21 (ENSLLEG00000008688) #26	ENSLLEG00000009433	FOXN2 (ENSLLEG00000009478)	ENSLLEG00000009634	FBXO11 (ENSLLEG00000009678) ##28	MSH6 (ENSLLEG00000010182)	ENSLLEG00000010340
Leishan spiny toad	MODERN SPECIES	7	EML6 (ENSLLEG00000005462)	ENSLLEG00000005606	SPTBN1 (ENSLLEG00000005643)	ENSLLEG00000006055	C2orf73 (ENSLLEG00000006067)	ACYP2 (ENSLLEG00000006098)	PSME4 (ENSLLEG00000006224) #20	GPR75 (ENSLLEG00000007287)	ERLEC1 (ENSLLEG00000007319) #21	CHAC2 (ENSLLEG00000007456)	ASB3 (ENSLLEG00000007484)	ENSLLEG00000007577	ENSLLEG00000007592	ENSLLEG00000007609	ENSLLEG00000007620	ENSLLEG00000007631 #22	NRXN1 (ENSLLEG00000007675) #22	ENSLLEG00000007829	ENSLLEG00000007845	ENSLLEG00000007885	ENSLLEG00000008101	FSHR (ENSLLEG00000008142)	LHCGR (ENSLLEG00000008344) ##23	GTF2A1L (ENSLLEG00000008495) #24	STON1 (ENSLLEG00000008577) #25	PPP1R21 (ENSLLEG00000008688) #26	ENSLLEG00000009433	FOXN2 (ENSLLEG00000009478)	ENSLLEG00000009634	FBXO11 (ENSLLEG00000009678) ##28	MSH6 (ENSLLEG00000010182)
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1619															ENSCMIG00000011396	ENSCMIG00000011402 #22	ENSCMIG00000011405	fshr (ENSCMIG00000011410)	TAF1A (ENSCMIG00000011416)	HHIPL2 (ENSCMIG00000011423)	DUSP10 (ENSCMIG00000011441)	ENSCMIG00000011447	RD3 (ENSCMIG00000011449)	slc30a1a (ENSCMIG00000011452)	nek2 (ENSCMIG00000011460)	ints7 (ENSCMIG00000011505)	ENSCMIG00000011653	PPP2R5A (ENSCMIG00000011705)	pacc1 (ENSCMIG00000011833)	nenf (ENSCMIG00000011860)	atf3 (ENSCMIG00000011864)
Elephant shark	MODERN SPECIES	1534	ENSCMIG00000004479	LRPPRC (ENSCMIG00000004641)	ppm1ba (ENSCMIG00000004894)	ENSCMIG00000004907	SLC3A1 (ENSCMIG00000004920)	ENSCMIG00000004928	ENSCMIG00000004932	CAMKMT (ENSCMIG00000004946)	SRBD1 (ENSCMIG00000005064)	PRKCE (ENSCMIG00000005496)	epas1b (ENSCMIG00000005662)	rhoq (ENSCMIG00000005671)	pigf (ENSCMIG00000005675)	cript (ENSCMIG00000005679)	ENSCMIG00000005689	ENSCMIG00000005708 #22	NRXN1 (ENSCMIG00000005750) #22	ENSCMIG00000005828	RREB1 (ENSCMIG00000005832)	ssr1 (ENSCMIG00000005844)	nphp3 (ENSCMIG00000005887)	uba5 (ENSCMIG00000005963)	acad11 (ENSCMIG00000006018)	ackr4b (ENSCMIG00000006169)	myripb (ENSCMIG00000006173)	ENSCMIG00000006179	eif1b (ENSCMIG00000006183)	CCK (ENSCMIG00000006193)	TRAK1 (ENSCMIG00000006222)	ENSCMIG00000006315	ENSCMIG00000006332
Elephant shark	MODERN SPECIES	1534	LRPPRC (ENSCMIG00000004641)	ppm1ba (ENSCMIG00000004894)	ENSCMIG00000004907	SLC3A1 (ENSCMIG00000004920)	ENSCMIG00000004928	ENSCMIG00000004932	CAMKMT (ENSCMIG00000004946)	SRBD1 (ENSCMIG00000005064)	PRKCE (ENSCMIG00000005496)	epas1b (ENSCMIG00000005662)	rhoq (ENSCMIG00000005671)	pigf (ENSCMIG00000005675)	cript (ENSCMIG00000005679)	ENSCMIG00000005689	ENSCMIG00000005708 #22	NRXN1 (ENSCMIG00000005750) #22	ENSCMIG00000005828	RREB1 (ENSCMIG00000005832)	ssr1 (ENSCMIG00000005844)	nphp3 (ENSCMIG00000005887)	uba5 (ENSCMIG00000005963)	acad11 (ENSCMIG00000006018)	ackr4b (ENSCMIG00000006169)	myripb (ENSCMIG00000006173)	ENSCMIG00000006179	eif1b (ENSCMIG00000006183)	CCK (ENSCMIG00000006193)	TRAK1 (ENSCMIG00000006222)	ENSCMIG00000006315	ENSCMIG00000006332	ENSCMIG00000006336
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.b #22
Hagfish	MODERN SPECIES	1422														ENSEBUG00000011798	rrad (ENSEBUG00000011084)	ENSEBUG00000010096 #22	pomt2 (ENSEBUG00000003103)	ENSEBUG00000015354	ENSEBUG00000005814	ENSEBUG00000013982	ENSEBUG00000010819	ENSEBUG00000013754	ENSEBUG00000003957	polr3c (ENSEBUG00000015243)	flad1 (ENSEBUG00000003057)	ENSEBUG00000007836	DYM (ENSEBUG00000009896)	acat2 (ENSEBUG00000005716)	SMAD3 (ENSEBUG00000015275)	ENSEBUG00000005908	ENSEBUG00000000625
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Reedfish	MODERN SPECIES		pmt (ENSECRG00000001525)	kat5b (ENSECRG00000001441)	rnaseh2c (ENSECRG00000001401)	ENSECRG00000001386	zdhhc24 (ENSECRG00000001369)	rbm4.3 (ENSECRG00000001356)	ENSECRG00000001333	ENSECRG00000001313	sf1 (ENSECRG00000001286)	pygmb (ENSECRG00000001247)	RASGRP2 (ENSECRG00000001118)	ENSECRG00000001078	ENSECRG00000000978	ENSECRG00000000880	nrxn2a (ENSECRG00000000834)	ENSECRG00000000815 ##22	MAP3K11 (ENSECRG00000000795)	PCNX3 (ENSECRG00000000755)	drap1 (ENSECRG00000000735)	zgc:63470 (ENSECRG00000000714)	rela (ENSECRG00000000703)	ENSECRG00000000616	ENSECRG00000000480	bbs1 (ENSECRG00000000457)	ENSECRG00000000448	ENSECRG00000000437	ENSECRG00000000425	pacs1a (ENSECRG00000000414)	sf3b2 (ENSECRG00000000403)	ENSECRG00000000397	ENSECRG00000000396
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a ##22
Euteleosteomorpha	ANCESTRAL SPECIES	262												ENSGT01100000263542.C	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b #28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b
Protacanthopterygii	ANCESTRAL SPECIES	126	ENSGT00390000016052	ENSGT00940000154335.b	ENSGT00550000074823.b.a	ENSGT00950000182946.lb.b.k.b	ENSGT00940000162142.c	ENSGT00950000183126.b.b	ENSGT00940000163053.c.a	ENSGT00390000009613.a	ENSGT00390000018409.g	ENSGT00390000015792	ENSGT00940000158678	ENSGT00390000004632	ENSGT00940000165723.a	ENSGT00940000156675.d	ENSGT00940000155309	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b #28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b
Northern pike	MODERN SPECIES	4	lipf (ENSELUG00000003363)	rnls (ENSELUG00000003342)	ENSELUG00000003315	atad1b (ENSELUG00000003303)	papss2b (ENSELUG00000003284)	minpp1b (ENSELUG00000003262)	ENSELUG00000028760	sgms1b (ENSELUG00000003250)	asah2 (ENSELUG00000003226)	A1CF (ENSELUG00000003159)	PRKG1 (ENSELUG00000003133)	dkk1b (ENSELUG00000003096)	pcdh15b (ENSELUG00000003074)	cox7a2l (ENSELUG00000002703)	ipmkb (ENSELUG00000003019)	ENSELUG00000002964 ##22	fshr (ENSELUG00000002850)	ENSELUG00000002834 #28	msh2 (ENSELUG00000002790)	gch2 (ENSELUG00000002769)	cript (ENSELUG00000002745)	pigf (ENSELUG00000002727)	ENSELUG00000002718	ENSELUG00000002694	mta3 (ENSELUG00000002680)	ppm1bb (ENSELUG00000000067)	ENSELUG00000002584	ENSELUG00000002563	sec24c (ENSELUG00000002559)	SYNPO2L (ENSELUG00000002540)	myoz1b (ENSELUG00000002528)
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a.a ##22
Huchen	DUPLICATION
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2382															ENSHHUG00000052726	ENSHHUG00000052724 ##22	ENSHHUG00000052722
Huchen	MODERN SPECIES	1685												ENSHHUG00000051643	ENSHHUG00000051646	ENSHHUG00000051648	ENSHHUG00000051650	ENSHHUG00000051653 ##22
Huchen	MODERN SPECIES	2063																ENSHHUG00000006836 ##22	ENSHHUG00000006729 ##28	cript (ENSHHUG00000006705)	pigf (ENSHHUG00000006697)	cox7a2l (ENSHHUG00000006689)	ENSHHUG00000006677	mta3 (ENSHHUG00000006298)	ENSHHUG00000006065	ppm1bb (ENSHHUG00000006050)	ENSHHUG00000006049	ENSHHUG00000006042	ENSHHUG00000005985	ENSHHUG00000005983	sec24c (ENSHHUG00000005492)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a.b.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a.b.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00940000154148.a.a	ENSGT00940000153710.b.b	ENSGT00390000009005	ENSGT00940000154696.e	ENSGT00390000016052.w	ENSGT00940000154335.b.n	ENSGT00550000074823.b.a.b	ENSGT00390000009613.a	ENSGT00390000018409.g.b	ENSGT00940000158306.e.b	ENSGT00940000158678.i.a	ENSGT00940000154704.d.b.z.b.a	ENSGT00940000165723.a.d	ENSGT00940000156675.d.d	ENSGT00940000155309.n	ENSGT00940000154292.a.a.b.a.a ##22	ENSGT00530000063425.a.a.a.b.i.b.a ##28	ENSGT00950000183100.C.c	ENSGT00390000016617.x	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a.d	ENSGT00940000156070.a.b.f	ENSGT00940000160346.A	ENSGT00940000154711.a.b.n	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.b.b	ENSGT00950000182924.A.b.a.a.h	ENSGT00950000183054.b.c.f	ENSGT00950000183027.a.b.c.b.f	ENSGT00940000155571.B.q.b.b	ENSGT01100000263502.B.a.a.d.b.c.b.a
Rainbow trout	MODERN SPECIES	7	ankrd22 (ENSOMYG00000013746)	lipf (ENSOMYG00000013606)	rnls (ENSOMYG00000013568)	ENSOMYG00000013531	atad1b (ENSOMYG00000013435)	papss2b (ENSOMYG00000013252)	minpp1b (ENSOMYG00000013155)	ENSOMYG00000073318	sgms1b (ENSOMYG00000013144)	ENSOMYG00000013093	ENSOMYG00000013019	dkk1b (ENSOMYG00000012983)	pcdh15b (ENSOMYG00000009324)	ipmkb (ENSOMYG00000007485)	ENSOMYG00000007414	ENSOMYG00000054165 ##22	ENSOMYG00000016314 ##28	cript (ENSOMYG00000060147)	pigf (ENSOMYG00000016272)	cox7a2l (ENSOMYG00000016248)	ENSOMYG00000049563	mta3 (ENSOMYG00000014153)	ppm1bb (ENSOMYG00000013973)	ENSOMYG00000013960	ENSOMYG00000007388	ENSOMYG00000006494	SYNPO2L (ENSOMYG00000005345)	myoz1b (ENSOMYG00000005323)	USP54 (ENSOMYG00000057992)	ENSOMYG00000075205	ENSOMYG00000062520
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00940000154148.a.a	ENSGT00940000153710.b.b	ENSGT00390000009005	ENSGT00940000154696.e	ENSGT00390000016052.w	ENSGT00940000154335.b.n	ENSGT00550000074823.b.a.b	ENSGT00390000009613.a	ENSGT00390000018409.g.b	ENSGT00940000158306.e.b	ENSGT00940000158678.i.a	ENSGT00940000154704.d.b.z.b.a	ENSGT00940000165723.a.d	ENSGT00940000156675.d.d	ENSGT00940000155309.n	ENSGT00940000154292.a.a.b.a.a ##22	ENSGT00530000063425.a.a.a.b.i.b.a ##28	ENSGT00950000183100.C.c	ENSGT00390000016617.x	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a.d	ENSGT00940000156070.a.b.f	ENSGT00940000160346.A	ENSGT00940000154711.a.b.n	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.b.b	ENSGT00950000182924.A.b.a.a.h	ENSGT00950000183054.b.c.f	ENSGT00950000183027.a.b.c.b.f	ENSGT00940000155571.B.q.b.a.b	ENSGT01100000263502.B.a.a.d.b.c.b.a
Coho salmon	MODERN SPECIES	12	ankrd22 (ENSOKIG00005006914)	lipf (ENSOKIG00005006837)	rnls (ENSOKIG00005006807)	ptenb (ENSOKIG00005006734)	atad1b (ENSOKIG00005006711)	papss2b (ENSOKIG00005006074)	minpp1b (ENSOKIG00005006024)	sgms1b (ENSOKIG00005006014)	ENSOKIG00005006004	A1CF (ENSOKIG00005005967)	PRKG1 (ENSOKIG00005036413)	dkk1b (ENSOKIG00005036367)	ENSOKIG00005036359	pcdh15b (ENSOKIG00005029469)	ipmkb (ENSOKIG00005029159)	ENSOKIG00005028865 ##22	ENSOKIG00005027176 ##28	cript (ENSOKIG00005027079)	pigf (ENSOKIG00005027060)	cox7a2l (ENSOKIG00005027041)	ENSOKIG00005027040	mta3 (ENSOKIG00005026608)	ppm1bb (ENSOKIG00005026564)	ENSOKIG00005026551	ENSOKIG00005026540	ENSOKIG00005026528	sec24c (ENSOKIG00005021968)	SYNPO2L (ENSOKIG00005021777)	myoz1b (ENSOKIG00005021761)	ENSOKIG00005021753	OPN4 (ENSOKIG00005021679)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a.b.a.b.a.a ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	7646																ENSHHUG00000007172 ##22	ENSHHUG00000007168 ##22
Huchen	MODERN SPECIES	7646															ENSHHUG00000007172 ##22	ENSHHUG00000007168 ##22
Salmoninae	ANCESTRAL SPECIES	371	ENSGT00940000153710.b.b	ENSGT00390000009005	ENSGT00940000154696.e	ENSGT00390000016052.w	ENSGT00940000154335.b.n	ENSGT00550000074823.b.a.b	ENSGT00390000018409.g.b	ENSGT00940000158306.e.b	ENSGT00940000158678.i.a	ENSGT00390000004632.b	ENSGT00940000154704.d.b.y	ENSGT00940000154704.d.b.z.b.a	ENSGT00940000165723.a.d	ENSGT00940000156675.d.d	ENSGT00940000155309.n	ENSGT00940000154292.a.a.b.a.b.a.b ##22
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00940000154710.a.a.f	ENSGT00940000154148.a.a	ENSGT00940000153710.b.b	ENSGT00390000009005	ENSGT00940000154696.e	ENSGT00390000016052.w	ENSGT00940000154335.b.n	ENSGT00550000074823.b.a.b	ENSGT00390000018409.g.b	ENSGT00940000158306.e.b	ENSGT00940000158678.i.a	ENSGT00940000154704.d.b.z.b.a	ENSGT00940000165723.a.d	ENSGT00940000156675.d.d	ENSGT00940000155309.n	ENSGT00940000154292.a.a.b.a.b.a.b ##22	ENSGT00530000063425.a.a.a.b.i.b.a ##28	ENSGT00950000183100.C.c	ENSGT00390000016617.x	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a.d	ENSGT00940000156070.a.b.f	ENSGT00940000160346.A	ENSGT00940000154711.a.b.m.b	ENSGT00940000154711.a.b.n	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.b.b	ENSGT00950000182924.A.b.a.a.h	ENSGT00950000183054.b.c.f	ENSGT00950000183027.a.b.c.b.f	ENSGT00940000155571.B.q.b.b
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000162142.d.j	ENSGT00940000154710.a.a.f	ENSGT00940000153710.b.b	ENSGT00390000009005	ENSGT00940000154696.e	ENSGT00390000016052.w	ENSGT00940000154335.b.n	ENSGT00550000074823.b.a.b	ENSGT00390000018409.g.b	ENSGT00940000158306.e.b	ENSGT00940000158678.i.a	ENSGT00940000154704.d.b.z.b.a	ENSGT00940000165723.a.d	ENSGT00940000156675.d.d	ENSGT00940000155309.n	ENSGT00940000154292.a.a.b.a.b.a.b ##22	ENSGT00530000063425.a.a.a.b.i.b.a ##28	ENSGT00950000183100.C.c	ENSGT00390000016617.x	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a.d	ENSGT00940000156070.a.b.f	ENSGT00940000160346.A	ENSGT00940000154711.a.b.m.b	ENSGT01100000263476.E.b.a.a.a.a.a.b.h.b.b	ENSGT00950000182924.A.b.a.a.h	ENSGT00950000183054.b.c.f	ENSGT00950000183027.a.b.c.b.f	ENSGT00940000155571.B.q.b.b	ENSGT01100000263502.B.a.a.d.b.c.b.a
Atlantic salmon	MODERN SPECIES	10	STAMBPL1 (ENSSSAG00000115451)	ankrd22 (ENSSSAG00000079009)	lipf (ENSSSAG00000078919)	rnls (ENSSSAG00000092349)	ENSSSAG00000078896	atad1b (ENSSSAG00000078880)	papss2b (ENSSSAG00000078629)	minpp1b (ENSSSAG00000099627)	sgms1b (ENSSSAG00000078606)	A1CF (ENSSSAG00000078531)	PRKG1 (ENSSSAG00000103015)	dkk1 (ENSSSAG00000104093)	pcdh15b (ENSSSAG00000121097)	ipmkb (ENSSSAG00000108547)	ENSSSAG00000113387	ENSSSAG00000073616 ##22	ENSSSAG00000072631 ##28	PIGF (ENSSSAG00000072584)	cox7a2l (ENSSSAG00000072577)	ENSSSAG00000107436	mta3 (ENSSSAG00000069251)	ppm1bb (ENSSSAG00000069158)	ENSSSAG00000069153	ENSSSAG00000069151	ENSSSAG00000069137	ENSSSAG00000066421	SYNPO2L (ENSSSAG00000106756)	myoz1b (ENSSSAG00000066344)	USP54 (ENSSSAG00000084243)	ENSSSAG00000066332	ldb3b (ENSSSAG00000066323)
River trout	MODERN SPECIES	11	STAMBPL1 (ENSSTUG00000021026)	ankrd22 (ENSSTUG00000020992)	lipf (ENSSTUG00000020954)	rnls (ENSSTUG00000020942)	ptenb (ENSSTUG00000020846)	atad1b (ENSSTUG00000020648)	papss2b (ENSSTUG00000019894)	minpp1b (ENSSTUG00000019854)	sgms1b (ENSSTUG00000019844)	A1CF (ENSSTUG00000019791)	PRKG1 (ENSSTUG00000019607)	dkk1b (ENSSTUG00000019594)	ENSSTUG00000019586	pcdh15b (ENSSTUG00000014070)	ipmkb (ENSSTUG00000013945)	ENSSTUG00000013578 ##22	ENSSTUG00000012861 ##28	ENSSTUG00000012809	cript (ENSSTUG00000012787)	pigf (ENSSTUG00000012774)	cox7a2l (ENSSTUG00000012765)	ENSSTUG00000012761	mta3 (ENSSTUG00000010806)	ppm1bb (ENSSTUG00000010745)	ENSSTUG00000010738	ENSSTUG00000010734	ENSSTUG00000010724	sec24c (ENSSTUG00000008402)	ENSSTUG00000008350	OPN4 (ENSSTUG00000008119)	ldb3b (ENSSTUG00000008100)
Huchen	MODERN SPECIES	8584																ENSHHUG00000009850 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000154292.a.a.b.a.b.b ##22
Huchen	MODERN SPECIES	1450	trpt1 (ENSHHUG00000042302)	ZBTB3 (ENSHHUG00000042310)	ENSHHUG00000042313	ENSHHUG00000042320	ENSHHUG00000042329	dpf2l (ENSHHUG00000042335)	ENSHHUG00000042343	ENSHHUG00000042346	ENSHHUG00000042349	SLC16A2 (ENSHHUG00000042355)	ENSHHUG00000042370	zgc:152774 (ENSHHUG00000042396)	ENSHHUG00000042415	ENSHHUG00000042421	ENSHHUG00000042424	ENSHHUG00000042426 ##22
Salmoninae	ANCESTRAL SPECIES	203	ENSGT00940000162142.d.i	ENSGT00940000154710.a.a.e	ENSGT00940000153710.b.a	ENSGT00940000154696.f	ENSGT00390000016052.x	ENSGT00940000154335.b.m	ENSGT00550000074823.b.a.a	ENSGT00390000018409.g.a	ENSGT00940000158306.e.a	ENSGT00390000015792	ENSGT00940000158678.i.b	ENSGT00940000154704.d.b.z.b.b	ENSGT00940000165723.a.c	ENSGT00940000156675.d.c	ENSGT00940000155309.m	ENSGT00940000154292.a.a.b.b ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b.i.b.b ##28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.d	ENSGT00390000016617.w	ENSGT00990000203830.a	ENSGT01030000234573.B.c.b.a.c	ENSGT00940000156070.a.b.e	ENSGT00940000154711.a.b.m	ENSGT00950000182924.A.b.a.a.g	ENSGT00950000183054.b.c.e	ENSGT00950000183027.a.b.c.b.e	ENSGT00940000155571.B.r	ENSGT00940000155571.A.h
Huchen	MODERN SPECIES	948															ipmkb (ENSHHUG00000010794)	ENSHHUG00000010848 ##22	ENSHHUG00000012561	ENSHHUG00000012567 ##28	msh2 (ENSHHUG00000012775)	gch2 (ENSHHUG00000013153)	cript (ENSHHUG00000013161)	pigf (ENSHHUG00000013173)	ENSHHUG00000013188	mta3 (ENSHHUG00000013213)	ENSHHUG00000013538	ppm1bb (ENSHHUG00000013544)	ENSHHUG00000013570	sec24c (ENSHHUG00000013594)	SYNPO2L (ENSHHUG00000014690)	myoz1b (ENSHHUG00000014696)	ENSHHUG00000014706
Salmoninae_a	ANCESTRAL SPECIES	45	ENSGT00940000162142.d.i	ENSGT00940000154710.a.a.e	ENSGT00940000153710.b.a	ENSGT00940000154696.f	ENSGT00390000016052.x.c	ENSGT00940000154335.b.m	ENSGT00550000074823.b.a.a	ENSGT00390000018409.g.a	ENSGT00940000158306.e.a	ENSGT00390000015792	ENSGT00940000158678.i.b	ENSGT00940000154704.d.b.z.b.b	ENSGT00940000165723.a.c	ENSGT00940000156675.d.c	ENSGT00940000155309.m	ENSGT00940000154292.a.a.b.b ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b.i.b.b ##28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.d	ENSGT00390000016617.w	ENSGT00990000203830.a	ENSGT01030000234573.B.c.b.a.c	ENSGT00940000156070.a.b.e	ENSGT00940000154711.a.b.m.a	ENSGT00950000182924.A.b.a.a.g	ENSGT00950000183054.b.c.e	ENSGT00950000183027.a.b.c.b.e	ENSGT00940000155571.B.q.b.a.a	ENSGT01100000263502.B.a.a.d.b.c.b.b
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000162142.d.i	ENSGT00940000154710.a.a.e	ENSGT00940000153710.b.a	ENSGT00940000154696.f	ENSGT00390000016052.x.c	ENSGT00940000154335.b.m	ENSGT00550000074823.b.a.a	ENSGT00390000018409.g.a	ENSGT00940000158306.e.a	ENSGT00390000015792	ENSGT00940000158678.i.b	ENSGT00940000154704.d.b.z.b.b	ENSGT00940000165723.a.c	ENSGT00940000156675.d.c	ENSGT00940000155309.m	ENSGT00940000154292.a.a.b.b ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b.i.b.b ##28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.d	ENSGT00390000016617.w	ENSGT00990000203830.a	ENSGT01030000234573.B.c.b.a.c	ENSGT00940000156070.a.b.e	ENSGT00940000154711.a.b.m.a	ENSGT00950000182924.A.b.a.a.g	ENSGT00950000183054.b.c.e	ENSGT00950000183027.a.b.c.b.e	ENSGT00940000155571.B.q.b.a.a	ENSGT00940000154877.C.jb.b
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000015734 ##35	ENSOMYG00000015612	atad1b (ENSOMYG00000015572)	MINPP1 (ENSOMYG00000015566)	ENSOMYG00000068829	sgms1b (ENSOMYG00000015549)	asah2 (ENSOMYG00000015445)	ENSOMYG00000015382	ENSOMYG00000064730	ENSOMYG00000055228	PRKG1 (ENSOMYG00000015282)	dkk1b (ENSOMYG00000015214)	pcdh15b (ENSOMYG00000009611)	ipmkb (ENSOMYG00000007590)	ENSOMYG00000065781	ENSOMYG00000007355 ##22	fshr (ENSOMYG00000006788)	ENSOMYG00000006276 ##28	ENSOMYG00000058020	msh2 (ENSOMYG00000005664)	gch2 (ENSOMYG00000077146)	cript (ENSOMYG00000070257)	pigf (ENSOMYG00000005297)	ENSOMYG00000058055	mta3 (ENSOMYG00000023897)	ppm1bb (ENSOMYG00000023570)	ENSOMYG00000061464	ENSOMYG00000022961	ENSOMYG00000022674	ENSOMYG00000075635	ENSOMYG00000073483
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000162142.d.i	ENSGT00940000154710.a.a.e	ENSGT00940000153710.b.a	ENSGT00940000154696.f	ENSGT00390000016052.x.c	ENSGT00940000154335.b.m	ENSGT00550000074823.b.a.a	ENSGT00390000018409.g.a	ENSGT00940000158306.e.a	ENSGT00390000015792	ENSGT00940000158678.i.b	ENSGT00940000154704.d.b.z.b.b	ENSGT00940000165723.a.c	ENSGT00940000156675.d.c	ENSGT00940000155309.m	ENSGT00940000154292.a.a.b.b ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b.i.b.b ##28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.d	ENSGT00390000016617.w	ENSGT00990000203830.a	ENSGT01030000234573.B.c.b.a.c	ENSGT00940000156070.a.b.e	ENSGT00940000154711.a.b.m.a	ENSGT00950000182924.A.b.a.a.g	ENSGT00950000183054.b.c.e	ENSGT00950000183027.a.b.c.b.e	ENSGT00940000155571.B.q.b.a.a	ENSGT00940000154877.C.jb.b
Coho salmon	MODERN SPECIES	17	acta2 (ENSOKIG00005022349)	STAMBPL1 (ENSOKIG00005022387)	lipf (ENSOKIG00005022447)	rnls (ENSOKIG00005022766)	ptenb (ENSOKIG00005022866)	atad1b (ENSOKIG00005023124)	minpp1b (ENSOKIG00005023191)	sgms1b (ENSOKIG00005023210)	asah2 (ENSOKIG00005023313)	ENSOKIG00005023534	A1CF (ENSOKIG00005023556)	PRKG1 (ENSOKIG00005023685)	dkk1b (ENSOKIG00005023988)	pcdh15b (ENSOKIG00005024144)	ipmkb (ENSOKIG00005025230)	ENSOKIG00005025404 ##22	ENSOKIG00005026194	fshr (ENSOKIG00005026200)	ENSOKIG00005026412 ##28	msh2 (ENSOKIG00005029611)	gch2 (ENSOKIG00005029689)	cript (ENSOKIG00005029701)	ENSOKIG00005029725	ENSOKIG00005029758	mta3 (ENSOKIG00005029857)	ppm1bb (ENSOKIG00005031286)	ENSOKIG00005031358	ENSOKIG00005032224	SYNPO2L (ENSOKIG00005034353)	MYOZ1 (ENSOKIG00005034360)	ENSOKIG00005034402
Chinook salmon	MODERN SPECIES	17	ch25h (ENSOTSG00005004767)	acta2 (ENSOTSG00005004768)	STAMBPL1 (ENSOTSG00005004787)	lipf (ENSOTSG00005004799)	atad1b (ENSOTSG00005006228)	ENSOTSG00005006651	minpp1b (ENSOTSG00005006673)	sgms1b (ENSOTSG00005006674)	asah2 (ENSOTSG00005006679)	ENSOTSG00005006690	A1CF (ENSOTSG00005006693)	PRKG1 (ENSOTSG00005006763)	dkk1b (ENSOTSG00005006881)	pcdh15b (ENSOTSG00005006912)	ipmkb (ENSOTSG00005012431)	ENSOTSG00005012462 ##22	fshr (ENSOTSG00005022021)	ENSOTSG00005022026 ##28	msh2 (ENSOTSG00005025555)	gch2 (ENSOTSG00005025556)	cript (ENSOTSG00005025557)	pigf (ENSOTSG00005025558)	ENSOTSG00005025559	mta3 (ENSOTSG00005025565)	ppm1bb (ENSOTSG00005025842)	ENSOTSG00005025843	sec24c (ENSOTSG00005025845)	myoz1b (ENSOTSG00005025856)	ENSOTSG00005025857	glud1b (ENSOTSG00005025860)	ldb3b (ENSOTSG00005025950)
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000162142.d.i	ENSGT00940000154710.a.a.e	ENSGT00940000153710.b.a	ENSGT00940000154696.f	ENSGT00390000016052.x.c	ENSGT00940000154335.b.m	ENSGT00550000074823.b.a.a	ENSGT00390000018409.g.a	ENSGT00940000158306.e.a	ENSGT00390000015792	ENSGT00940000158678.i.b	ENSGT00940000154704.d.b.z.b.b	ENSGT00940000165723.a.c	ENSGT00940000156675.d.c	ENSGT00940000155309.m	ENSGT00940000154292.a.a.b.b ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b.i.b.b ##28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C.d	ENSGT00390000016617.w	ENSGT00990000203830.a	ENSGT01030000234573.B.c.b.a.c	ENSGT00940000156070.a.b.e	ENSGT00940000154711.a.b.m.a	ENSGT00950000182924.A.b.a.a.g	ENSGT00950000183054.b.c.e	ENSGT00950000183027.a.b.c.b.e	ENSGT00940000155571.B.q.b.a.a	ENSGT01100000263502.B.a.a.d.b.c.b.b
River trout	MODERN SPECIES	1	ch25h (ENSSTUG00000028337)	acta2 (ENSSTUG00000028343)	STAMBPL1 (ENSSTUG00000028373)	lipf (ENSSTUG00000028446)	rnls (ENSSTUG00000029420)	ENSSTUG00000029437	atad1b (ENSSTUG00000029487)	A1CF (ENSSTUG00000029748)	sgms1b (ENSSTUG00000029819)	asah2 (ENSSTUG00000029837)	PRKG1 (ENSSTUG00000030007)	ENSSTUG00000030128	dkk1b (ENSSTUG00000030139)	pcdh15b (ENSSTUG00000030201)	ipmkb (ENSSTUG00000031089)	ENSSTUG00000031145 ##22	fshr (ENSSTUG00000033687)	ENSSTUG00000033777 ##28	msh2 (ENSSTUG00000035661)	gch2 (ENSSTUG00000036334)	cript (ENSSTUG00000036349)	pigf (ENSSTUG00000036363)	ENSSTUG00000036383	mta3 (ENSSTUG00000036454)	ppm1bb (ENSSTUG00000038389)	PRKCE (ENSSTUG00000038455)	sec24c (ENSSTUG00000039165)	SYNPO2L (ENSSTUG00000039593)	myoz1b (ENSSTUG00000039598)	ENSSTUG00000039603	glud1b (ENSSTUG00000039626)
Atlantic salmon	MODERN SPECIES	20	ch25h (ENSSSAG00000068373)	acta2 (ENSSSAG00000068379)	STAMBPL1 (ENSSSAG00000114861)	lich (ENSSSAG00000068628)	rnls (ENSSSAG00000068984)	rnls (ENSSSAG00000115824)	ptenb (ENSSSAG00000068992)	atad1b (ENSSSAG00000069025)	minpp1b (ENSSSAG00000086246)	asah2 (ENSSSAG00000069141)	A1CF (ENSSSAG00000070249)	PRKG1 (ENSSSAG00000070265)	dkk1b (ENSSSAG00000070290)	pcdh15b (ENSSSAG00000070424)	ipmkb (ENSSSAG00000086567)	ENSSSAG00000073569 ##22	fshr (ENSSSAG00000073651)	ENSSSAG00000073710 ##28	msh2 (ENSSSAG00000074238)	gch2 (ENSSSAG00000086698)	cript (ENSSSAG00000084477)	pigf (ENSSSAG00000074315)	ENSSSAG00000115758	mta3 (ENSSSAG00000074371)	ppm1bb (ENSSSAG00000075905)	ENSSSAG00000075914	ENSSSAG00000076008	ENSSSAG00000094040	ENSSSAG00000077817	myoz1b (ENSSSAG00000077833)	ENSSSAG00000085705
Acanthomorphata	ANCESTRAL SPECIES	12	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000160878.f	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b #28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000154711.a.a	ENSGT00940000155930	ENSGT00390000000854.c.a
Cod	MODERN SPECIES	9	ENSGMOG00000013303	INSYN2A (ENSGMOG00000022713)	dock1 (ENSGMOG00000001074)	ENSGMOG00000024965	ENSGMOG00000024962	foxi1 (ENSGMOG00000026966)	ENSGMOG00000023979	foxi1 (ENSGMOG00000005470)	ENSGMOG00000015020	ENSGMOG00000014054	ENSGMOG00000014095	ENSGMOG00000035788 ##8	ENSGMOG00000014129 ##12	psme4b (ENSGMOG00000014159) ##20	ENSGMOG00000035138	ENSGMOG00000014265 ##22	fshr (ENSGMOG00000017651)	ENSGMOG00000031941	ENSGMOG00000012800	ENSGMOG00000032351	ENSGMOG00000026426	ENSGMOG00000024268	ENSGMOG00000001503	ENSGMOG00000001496	ENSGMOG00000001481	ENSGMOG00000036982	ENSGMOG00000001460	ENSGMOG00000035922	ENSGMOG00000017330	vkorc1 (ENSGMOG00000009953)	mapk7 (ENSGMOG00000031595)
Euacanthomorphacea	ANCESTRAL SPECIES	21	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000160878.f	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b #28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000154711.a.a	ENSGT00940000155930	ENSGT00390000000854.c.a
Pinecone sodierfish	MODERN SPECIES	10	uros (ENSMMDG00005024738)	bccip (ENSMMDG00005024739)	dhx32a (ENSMMDG00005024740)	FANK1 (ENSMMDG00005024741)	ADAM12 (ENSMMDG00005024742)	dock1 (ENSMMDG00005024743)	INSYN2A (ENSMMDG00005024777)	foxi1 (ENSMMDG00005024778)	CLRN3 (ENSMMDG00005024779)	PTPRE (ENSMMDG00005024780)	entpd1 (ENSMMDG00005024935)	ENSMMDG00005024936 ##8	ENSMMDG00005024937 ##12	psme4b (ENSMMDG00005024938) ##20	chac2 (ENSMMDG00005024939)	ENSMMDG00005024940 ##22	fshr (ENSMMDG00005024941)	ENSMMDG00005024944 #28	msh2 (ENSMMDG00005024965)	gch2 (ENSMMDG00005024968)	cript (ENSMMDG00005024969)	pigf (ENSMMDG00005024970)	cox7a2l (ENSMMDG00005024972)	KCNG3 (ENSMMDG00005024973)	mta3 (ENSMMDG00005024978)	ppm1bb (ENSMMDG00005025028)	ENSMMDG00005025029	PRKCE (ENSMMDG00005025030)	ENSMMDG00005012927	glud1b (ENSMMDG00005012943)	sncgb (ENSMMDG00005013010)
Percomorphaceae	ANCESTRAL SPECIES	21	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00530000063425.a.a.a.b #28	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000154711.a.a	ENSGT00940000155930	ENSGT00390000000854.c.a
Tiger tail seahorse	MODERN SPECIES	126	ENSHCOG00000016655	ENSHCOG00000016810	ENSHCOG00000016831	dock1 (ENSHCOG00000016880)	INSYN2A (ENSHCOG00000016896)	ENSHCOG00000016925	foxi1 (ENSHCOG00000016959)	CLRN3 (ENSHCOG00000016967)	PTPRE (ENSHCOG00000017013)	entpd1 (ENSHCOG00000017044)	ENSHCOG00000017051 ##8	ENSHCOG00000017547 ##12	ENSHCOG00000017607 ##20	ENSHCOG00000017635 ##20	chac2 (ENSHCOG00000017643)	ENSHCOG00000017706 ##22	fshr (ENSHCOG00000018243)	ENSHCOG00000018332 #28
Percomorphaceae_B	ANCESTRAL SPECIES	23	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000154430.c.a	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000155495.C.a.a	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Mangrove rivulus	MODERN SPECIES	4	CTBP2 (ENSKMAG00000013423)	mmp21 (ENSKMAG00000013383)	uros (ENSKMAG00000013364)	bccip (ENSKMAG00000013341)	ADAM12 (ENSKMAG00000013300)	INSYN2A (ENSKMAG00000013278)	dock1 (ENSKMAG00000012961)	foxi1 (ENSKMAG00000012856)	CLRN3 (ENSKMAG00000012843)	PTPRE (ENSKMAG00000012734)	entpd1 (ENSKMAG00000012692)	ENSKMAG00000012680 ##8	ENSKMAG00000012624 ##12	psme4b (ENSKMAG00000012510) ##20	chac2 (ENSKMAG00000012469)	ENSKMAG00000012218 ##22	fshr (ENSKMAG00000011968)	ENSKMAG00000011840 #28	msh2 (ENSKMAG00000011724)	gch2 (ENSKMAG00000011696)	cript (ENSKMAG00000011671)	pigf (ENSKMAG00000011651)	cox7a2l (ENSKMAG00000011641)	KCNG3 (ENSKMAG00000011631)	mta3 (ENSKMAG00000011576)	ppm1bb (ENSKMAG00000011540)	ENSKMAG00000011517	PRKCE (ENSKMAG00000011472)	ENSKMAG00000011437	glud1b (ENSKMAG00000011383)	sncgb (ENSKMAG00000011327)
Turquoise killifish	MODERN SPECIES	1621	FAM196A (ENSNFUG00015023337)	dock1 (ENSNFUG00015022465)	ENSNFUG00015022381	foxi1 (ENSNFUG00015022377)	ENSNFUG00015022376	ENSNFUG00015022374	PTPRE (ENSNFUG00015022136)	ENTPD1 (ENSNFUG00015022121)	ENSNFUG00015022118 ##8	ENSNFUG00015022115 ##20	ENSNFUG00015022050 ##12	ENSNFUG00015022024 ##20	chac2 (ENSNFUG00015022019)	ENSNFUG00015022017	ENSNFUG00015022016	ENSNFUG00015017985 ##22	fshr (ENSNFUG00015017788)	ENSNFUG00015017625 #28	msh2 (ENSNFUG00015015901)	gch2 (ENSNFUG00015015801)	CRIPT (ENSNFUG00015015792)	pigf (ENSNFUG00015015785)	COX7A3 (ENSNFUG00015015777)	KCNG3 (ENSNFUG00015015774)	mta3 (ENSNFUG00015015255)	ENSNFUG00015015201	ENSNFUG00015015197	PPM1BB (ENSNFUG00015015177)	ENSNFUG00015015160	Nfu_g_1_022893 (ENSNFUG00015014128)	ENSNFUG00015014040
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
NAME_6	ANCESTRAL SPECIES	103					ENSGT00730000113876	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Amazon molly	MODERN SPECIES	386					ENSPFOG00000001833	dock1 (ENSPFOG00000002188)	INSYN2A (ENSPFOG00000005489)	foxi1 (ENSPFOG00000005531)	CLRN3 (ENSPFOG00000005546)	PTPRE (ENSPFOG00000005586)	entpd1 (ENSPFOG00000006089)	ENSPFOG00000006225 ##8	ENSPFOG00000006243 ##12	psme4b (ENSPFOG00000006853) ##20	chac2 (ENSPFOG00000008142)	ENSPFOG00000008208 ##22	fshr (ENSPFOG00000009187)	ENSPFOG00000009352 #28	msh2 (ENSPFOG00000009659)	gch2 (ENSPFOG00000009913)	cript (ENSPFOG00000009956)	pigf (ENSPFOG00000009963)	cox7a2l (ENSPFOG00000009996)	KCNG3 (ENSPFOG00000010029)	mta3 (ENSPFOG00000010071)	ppm1bb (ENSPFOG00000010234)	ENSPFOG00000010291	ENSPFOG00000010318	ENSPFOG00000010588	glud1b (ENSPFOG00000010615)	sncgb (ENSPFOG00000023320)
Sailfin molly	MODERN SPECIES	298														ENSPLAG00000001743 ##20	chac2 (ENSPLAG00000001736)	ENSPLAG00000001692 ##22	fshr (ENSPLAG00000001557)	ENSPLAG00000001544 #28	msh2 (ENSPLAG00000001517)	gch2 (ENSPLAG00000001507)	cript (ENSPLAG00000001504)	pigf (ENSPLAG00000001501)	cox7a2l (ENSPLAG00000001499)	KCNG3 (ENSPLAG00000001495)	mta3 (ENSPLAG00000001493)	ppm1bb (ENSPLAG00000001479)	ENSPLAG00000001473	ENSPLAG00000001462
Guppy	MODERN SPECIES	449	ENSPREG00000006829	mmp21 (ENSPREG00000006771)	uros (ENSPREG00000006720)	bccip (ENSPREG00000006691)	dhx32a (ENSPREG00000006556)	ADAM12 (ENSPREG00000006491)	INSYN2A (ENSPREG00000006465)	dock1 (ENSPREG00000006116)	ENSPREG00000006020	PTPRE (ENSPREG00000005928)	entpd1 (ENSPREG00000005868)	ENSPREG00000005798 ##8	ENSPREG00000005749 ##12	psme4b (ENSPREG00000005613) ##20	chac2 (ENSPREG00000005589)	ENSPREG00000005402 ##22	fshr (ENSPREG00000005324)	ENSPREG00000005237 #28	msh2 (ENSPREG00000005175)	gch2 (ENSPREG00000005135)	cript (ENSPREG00000005111)	pigf (ENSPREG00000005090)	cox7a2l (ENSPREG00000005067)	KCNG3 (ENSPREG00000005051)	mta3 (ENSPREG00000005028)	ppm1bb (ENSPREG00000004991)	ENSPREG00000004970	ENSPREG00000004923	glud1b (ENSPREG00000004860)	sncgb (ENSPREG00000004823)	ldb3b (ENSPREG00000004787)
Platyfish	MODERN SPECIES	1	uros (ENSXMAG00000016520)	bccip (ENSXMAG00000029181)	dhx32a (ENSXMAG00000016496)	ADAM12 (ENSXMAG00000016474)	INSYN2A (ENSXMAG00000016473)	dock1 (ENSXMAG00000016344)	foxi1 (ENSXMAG00000016341)	CLRN3 (ENSXMAG00000016337)	PTPRE (ENSXMAG00000016284)	entpd1 (ENSXMAG00000016261)	ENSXMAG00000016254 ##8	ENSXMAG00000016191 ##12	ENSXMAG00000016164 ##20	ENSXMAG00000024975 ##20	chac2 (ENSXMAG00000016161)	ENSXMAG00000016119 ##22	fshr (ENSXMAG00000016086)	ENSXMAG00000016053 #28	msh2 (ENSXMAG00000014388)	ENSXMAG00000026472	ENSXMAG00000023099	gch2 (ENSXMAG00000016045)	cript (ENSXMAG00000023833)	pigf (ENSXMAG00000016036)	cox7a2l (ENSXMAG00000016032)	ENSXMAG00000027936	mta3 (ENSXMAG00000015994)	ppm1bb (ENSXMAG00000015990)	ENSXMAG00000020326	ENSXMAG00000015967	ENSXMAG00000015965
NAME_4	ANCESTRAL SPECIES	22	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867.x	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b
Mummichog	MODERN SPECIES	312					ENSFHEG00000020223	ENSFHEG00000020248	foxi1 (ENSFHEG00000020252)	CLRN3 (ENSFHEG00000020261)	PTPRE (ENSFHEG00000020293)	entpd1 (ENSFHEG00000020312)	ENSFHEG00000020323 ##8	ENSFHEG00000020354 ##12	ENSFHEG00000020397 ##20	ENSFHEG00000020452 ##20	chac2 (ENSFHEG00000020465)	ENSFHEG00000020535 ##22	fshr (ENSFHEG00000020704)	ENSFHEG00000020778 #28	msh2 (ENSFHEG00000020813)
Sheepshead minnow	MODERN SPECIES	239	bccip (ENSCVAG00000006764)	dhx32a (ENSCVAG00000006752)	ADAM12 (ENSCVAG00000006639)	dock1 (ENSCVAG00000006615)	INSYN2A (ENSCVAG00000006444)	foxi1 (ENSCVAG00000006440)	CLRN3 (ENSCVAG00000006429)	PTPRE (ENSCVAG00000006423)	entpd1 (ENSCVAG00000006313)	ENSCVAG00000006293 ##8	ENSCVAG00000000182 ##12	ENSCVAG00000006260	ENSCVAG00000006175 ##20	ENSCVAG00000006153 ##20	chac2 (ENSCVAG00000006136)	ENSCVAG00000006113 ##22	fshr (ENSCVAG00000005887)	ENSCVAG00000005863 #28	msh2 (ENSCVAG00000005802)	gch2 (ENSCVAG00000005750)	cript (ENSCVAG00000005727)	pigf (ENSCVAG00000005714)	cox7a2l (ENSCVAG00000005708)	KCNG3 (ENSCVAG00000005682)	mta3 (ENSCVAG00000005678)	ppm1bb (ENSCVAG00000005615)	ENSCVAG00000005602	ENSCVAG00000005595	ENSCVAG00000005589	ENSCVAG00000005560
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b.c.a	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Oryzias_b	ANCESTRAL SPECIES	9	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b.c.a	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00390000000854.c.b	ENSGT00950000183175.A.d.b
Indian medaka	MODERN SPECIES	17	uros (ENSOMEG00000010827)	bccip (ENSOMEG00000010778)	dhx32a (ENSOMEG00000010746)	ADAM12 (ENSOMEG00000010655)	dock1 (ENSOMEG00000010526)	INSYN2A (ENSOMEG00000000245)	foxi1 (ENSOMEG00000010282)	CLRN3 (ENSOMEG00000010278)	PTPRE (ENSOMEG00000010226)	entpd1 (ENSOMEG00000009992)	ENSOMEG00000009974 ##8	ENSOMEG00000009961 ##12	ENSOMEG00000009910 ##20	ENSOMEG00000009867 ##20	chac2 (ENSOMEG00000009857)	ENSOMEG00000009788 ##22	fshr (ENSOMEG00000009499)	ENSOMEG00000009461 #28	msh2 (ENSOMEG00000009381)	gch2 (ENSOMEG00000009319)	cript (ENSOMEG00000009295)	pigf (ENSOMEG00000009279)	cox7a2l (ENSOMEG00000009264)	KCNG3 (ENSOMEG00000009254)	mta3 (ENSOMEG00000009222)	ppm1bb (ENSOMEG00000009121)	ENSOMEG00000009091	PRKCE (ENSOMEG00000009065)	ENSOMEG00000008971	glud1b (ENSOMEG00000008889)	ENSOMEG00000008839
Javanese ricefish	MODERN SPECIES	10	ADAM12 (ENSOJAG00000022277)	ENSOJAG00000022470	ENSOJAG00000011978	ENSOJAG00000011995	ENSOJAG00000012030	dock1 (ENSOJAG00000012110)	INSYN2A (ENSOJAG00000012806)	foxi1 (ENSOJAG00000012819)	ENSOJAG00000012850	PTPRE (ENSOJAG00000013059)	entpd1 (ENSOJAG00000015172)	ENSOJAG00000015189 ##8	ENSOJAG00000015247 ##12	psme4b (ENSOJAG00000016473) ##20	chac2 (ENSOJAG00000017414)	ENSOJAG00000017475 ##22	TSHR (ENSOJAG00000018301)	ENSOJAG00000018983 #28	msh2 (ENSOJAG00000019472)	gch2 (ENSOJAG00000019556)	cript (ENSOJAG00000019595)	pigf (ENSOJAG00000019606)	cox7a2l (ENSOJAG00000019628)	KCNG3 (ENSOJAG00000019637)	mta3 (ENSOJAG00000019831)	ppm1bb (ENSOJAG00000021069)	ENSOJAG00000021083	PRKCE (ENSOJAG00000021098)	ENSOJAG00000021153	glud1b (ENSOJAG00000021202)	sncgb (ENSOJAG00000021260)
Oryzias_a	ANCESTRAL SPECIES	17	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b.c.a	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Japanese Medaka HdrR	MODERN SPECIES	10	bccip (ENSORLG00000029153)	dhx32a (ENSORLG00000009790)	ADAM12 (ENSORLG00000009815)	dock1 (ENSORLG00000009890)	INSYN2A (ENSORLG00000009903)	foxi1 (ENSORLG00000030100)	CLRN3 (ENSORLG00000009909)	PTPRE (ENSORLG00000009934)	entpd1 (ENSORLG00000009989)	ENSORLG00000010007 ##8	ENSORLG00000010020 ##12	ENSORLG00000025797 ##12	ENSORLG00000010088 ##20	ENSORLG00000023995 ##20	chac2 (ENSORLG00000029575)	ENSORLG00000010148 ##22	fshr (ENSORLG00000010178)	ENSORLG00000010222 #28	ENSORLG00000028053	msh2 (ENSORLG00000010268)	gch2 (ENSORLG00000018755)	cript (ENSORLG00000027213)	pigf (ENSORLG00000026182)	cox7a2l (ENSORLG00000027806)	ENSORLG00000030175	mta3 (ENSORLG00000010299)	ppm1bb (ENSORLG00000010309)	six3b (ENSORLG00000010313)	ENSORLG00000024750	ENSORLG00000010344	ENSORLG00000027573
Chinese medaka	MODERN SPECIES	1099	ENSOSIG00000017255	mmp21 (ENSOSIG00000017266)	bccip (ENSOSIG00000017300)	dhx32a (ENSOSIG00000017305)	ADAM12 (ENSOSIG00000017517)	dock1 (ENSOSIG00000018381)	INSYN2A (ENSOSIG00000018441)	foxi1 (ENSOSIG00000018442)	CLRN3 (ENSOSIG00000018445)	PTPRE (ENSOSIG00000018625)	entpd1 (ENSOSIG00000021024)	ENSOSIG00000021027 ##8	ENSOSIG00000021054 ##12	psme4b (ENSOSIG00000021455) ##20	chac2 (ENSOSIG00000021863)	ENSOSIG00000021986 ##22	fshr (ENSOSIG00000022380)	ENSOSIG00000022568 #28	msh2 (ENSOSIG00000022879)	gch2 (ENSOSIG00000022882)	cript (ENSOSIG00000022885)	pigf (ENSOSIG00000022886)	cox7a2l (ENSOSIG00000022888)	KCNG3 (ENSOSIG00000022890)	mta3 (ENSOSIG00000022918)	ppm1bb (ENSOSIG00000022945)	ENSOSIG00000022948	ENSOSIG00000022963	ENSOSIG00000022979	glud1b (ENSOSIG00000023003)	sncgb (ENSOSIG00000023012)
Ovalentaria_B	ANCESTRAL SPECIES	21	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Pomacentridae	ANCESTRAL SPECIES	13	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b.h.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Pomacentridae_A	ANCESTRAL SPECIES	11	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b.h.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Amphiprion	ANCESTRAL SPECIES	78	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b.h.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943
Clown anemonefish	MODERN SPECIES	1675														ENSAOCG00000020218 ##20	chac2 (ENSAOCG00000020230)	ENSAOCG00000020464 ##22	fshr (ENSAOCG00000021150)	ENSAOCG00000021339 #28	msh2 (ENSAOCG00000021411)	gch2 (ENSAOCG00000021468)	cript (ENSAOCG00000021510)	pigf (ENSAOCG00000021542)	cox7a2l (ENSAOCG00000021576)	KCNG3 (ENSAOCG00000021587)	mta3 (ENSAOCG00000021610)	ppm1bb (ENSAOCG00000001579)	ENSAOCG00000021670	PRKCE (ENSAOCG00000021738)	ENSAOCG00000021859	glud1b (ENSAOCG00000021949)
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000020611	mmp21 (ENSAPEG00000020650)	bccip (ENSAPEG00000020684)	dhx32a (ENSAPEG00000020721)	ADAM12 (ENSAPEG00000020789)	dock1 (ENSAPEG00000021059)	INSYN2A (ENSAPEG00000021246)	foxi1 (ENSAPEG00000021260)	CLRN3 (ENSAPEG00000021262)	PTPRE (ENSAPEG00000021345)	entpd1 (ENSAPEG00000021399)	ENSAPEG00000021423 ##8	ENSAPEG00000021432 ##12	psme4b (ENSAPEG00000021580) ##20	chac2 (ENSAPEG00000022001)	ENSAPEG00000022012 ##22	ENSAPEG00000022050	fshr (ENSAPEG00000022124)	ENSAPEG00000022423 #28	msh2 (ENSAPEG00000022490)	gch2 (ENSAPEG00000022541)	cript (ENSAPEG00000022564)	pigf (ENSAPEG00000022584)	cox7a2l (ENSAPEG00000022595)	KCNG3 (ENSAPEG00000022615)	mta3 (ENSAPEG00000022633)	ppm1bb (ENSAPEG00000022669)	ENSAPEG00000022689	PRKCE (ENSAPEG00000022706)	ENSAPEG00000022746	glud1b (ENSAPEG00000022759)
Spiny chromis	MODERN SPECIES	1626															ENSAPOG00000018255	ENSAPOG00000018357 ##22	fshr (ENSAPOG00000018739)	ENSAPOG00000018851 #28	ENSAPOG00000000518	ENSAPOG00000018884
Bicolor damselfish	MODERN SPECIES	623	ENSSPAG00000015952	h2ax (ENSSPAG00000016057)	c2cd2l (ENSSPAG00000016075)	dpagt1 (ENSSPAG00000016152)	hinfp (ENSSPAG00000016177)	ABCG4 (ENSSPAG00000016238)	kat5b (ENSSPAG00000016282)	SIPA1 (ENSSPAG00000016355)	ENSSPAG00000016382	entpd1 (ENSSPAG00000016423)	ENSSPAG00000016450 ##8	ENSSPAG00000016466 ##12	ENSSPAG00000016528 ##20	ENSSPAG00000016576 ##20	chac2 (ENSSPAG00000016597)	ENSSPAG00000016608 ##22	fshr (ENSSPAG00000016656)	ENSSPAG00000016684 #28
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000178120	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000178120	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156563.b.o	ENSGT00940000159150	ENSGT00940000156563.b.p	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156563.b.o.c.b.b	ENSGT00940000159150	ENSGT00940000156563.b.o.c.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930
Burton s mouthbrooder	MODERN SPECIES	300	mmp21 (ENSHBUG00000019529)	uros (ENSHBUG00000019555)	bccip (ENSHBUG00000019589)	dhx32a (ENSHBUG00000019742)	ADAM12 (ENSHBUG00000019769)	INSYN2A (ENSHBUG00000019788)	dock1 (ENSHBUG00000020126)	foxi1 (ENSHBUG00000020153)	CLRN3 (ENSHBUG00000020162)	PTPRE (ENSHBUG00000020246)	entpd1 (ENSHBUG00000020265)	ENSHBUG00000020276 ##8	ENSHBUG00000020343 ##12	psme4b (ENSHBUG00000020548) ##20	chac2 (ENSHBUG00000020573)	ENSHBUG00000020867 ##22	fshr (ENSHBUG00000023442)	ENSHBUG00000023563 #28	msh2 (ENSHBUG00000023622)	gch2 (ENSHBUG00000023634)	cript (ENSHBUG00000023665)	pigf (ENSHBUG00000023672)	cox7a2l (ENSHBUG00000023685)	KCNG3 (ENSHBUG00000023714)	ENSHBUG00000023761	mta3 (ENSHBUG00000023778)
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156563.b.o.c.b.b	ENSGT00940000159150	ENSGT00940000156563.b.o.c.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930
P. nyererei	MODERN SPECIES	364	mmp21 (ENSPNYG00000001575)	uros (ENSPNYG00000001614)	bccip (ENSPNYG00000001654)	dhx32a (ENSPNYG00000001703)	ADAM12 (ENSPNYG00000001858)	dock1 (ENSPNYG00000002157)	INSYN2A (ENSPNYG00000002374)	foxi1 (ENSPNYG00000002384)	CLRN3 (ENSPNYG00000002403)	ENSPNYG00000002428	entpd1 (ENSPNYG00000002453)	ENSPNYG00000002482 ##8	ENSPNYG00000002602 ##12	psme4b (ENSPNYG00000002640) ##20	chac2 (ENSPNYG00000003008)	ENSPNYG00000003022 ##22	fshr (ENSPNYG00000003121)	ENSPNYG00000003427 #28	msh2 (ENSPNYG00000003507)	gch2 (ENSPNYG00000003567)	cript (ENSPNYG00000003596)	pigf (ENSPNYG00000003633)	cox7a2l (ENSPNYG00000003750)	KCNG3 (ENSPNYG00000003767)	mta3 (ENSPNYG00000003779)	NQO2 (ENSPNYG00000003817)
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156563.b.o.c.b.b	ENSGT00940000159150	ENSGT00940000156563.b.o.c.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930
Zebra mbuna	MODERN SPECIES	1111	uros (ENSMZEG00005001738)	bccip (ENSMZEG00005001767)	dhx32a (ENSMZEG00005001790)	ADAM12 (ENSMZEG00005001803)	dock1 (ENSMZEG00005001868)	INSYN2A (ENSMZEG00005002021)	foxi1 (ENSMZEG00005002029)	CLRN3 (ENSMZEG00005002033)	PTPRE (ENSMZEG00005002062)	entpd1 (ENSMZEG00005002126)	ENSMZEG00005002135 ##8	ENSMZEG00005002139 ##12	ENSMZEG00005002158 ##20	ENSMZEG00005002201 ##20	chac2 (ENSMZEG00005002207)	ENSMZEG00005002243 ##22	fshr (ENSMZEG00005002353)	ENSMZEG00005002410 #28	msh2 (ENSMZEG00005002445)	gch2 (ENSMZEG00005002482)	cript (ENSMZEG00005002506)	pigf (ENSMZEG00005002520)	cox7a2l (ENSMZEG00005002534)	KCNG3 (ENSMZEG00005002548)	mta3 (ENSMZEG00005002564)	ENSMZEG00005002630	nqo1 (ENSMZEG00005002670)	nqo1 (ENSMZEG00005002686)	ENSMZEG00005002707	ENSMZEG00005002729	nqo1 (ENSMZEG00005002743)
Eastern happy	MODERN SPECIES	20	mmp21 (ENSACLG00000003816)	uros (ENSACLG00000003787)	bccip (ENSACLG00000003741)	dhx32a (ENSACLG00000003726)	ADAM12 (ENSACLG00000003663)	INSYN2A (ENSACLG00000003653)	dock1 (ENSACLG00000003552)	foxi1 (ENSACLG00000003169)	CLRN3 (ENSACLG00000003144)	PTPRE (ENSACLG00000003046)	entpd1 (ENSACLG00000003027)	ENSACLG00000003022 ##8	ENSACLG00000002990 ##12	psme4b (ENSACLG00000002958) ##20	chac2 (ENSACLG00000002921)	ENSACLG00000002596 ##22	fshr (ENSACLG00000002263)	ENSACLG00000002160 #28	msh2 (ENSACLG00000002055)	gch2 (ENSACLG00000002031)	cript (ENSACLG00000002008)	pigf (ENSACLG00000001978)	cox7a2l (ENSACLG00000001956)	KCNG3 (ENSACLG00000001935)	mta3 (ENSACLG00000001843)	NQO2 (ENSACLG00000001653)	ENSACLG00000001606	nqo1 (ENSACLG00000001590)	nqo1 (ENSACLG00000001581)	ENSACLG00000001548	ppm1bb (ENSACLG00000001519)
Lyretail cichlid	MODERN SPECIES	309	uros (ENSNBRG00000012750)	bccip (ENSNBRG00000012591)	dhx32a (ENSNBRG00000012459)	ADAM12 (ENSNBRG00000012394)	INSYN2A (ENSNBRG00000012379)	dock1 (ENSNBRG00000012166)	foxi1 (ENSNBRG00000012107)	CLRN3 (ENSNBRG00000012095)	PTPRE (ENSNBRG00000012054)	entpd1 (ENSNBRG00000012036)	ENSNBRG00000011959 ##8	ENSNBRG00000011922 ##12	psme4b (ENSNBRG00000011572) ##20	chac2 (ENSNBRG00000011445)	ENSNBRG00000011426	ENSNBRG00000011367 ##22	fshr (ENSNBRG00000011328)	ENSNBRG00000011234 #28	msh2 (ENSNBRG00000011181)	gch2 (ENSNBRG00000011160)	cript (ENSNBRG00000011134)	pigf (ENSNBRG00000011076)	cox7a2l (ENSNBRG00000011058)	KCNG3 (ENSNBRG00000011043)	mta3 (ENSNBRG00000010995)	nqo1 (ENSNBRG00000010883)	ENSNBRG00000010834	NQO2 (ENSNBRG00000010813)	ppm1bb (ENSNBRG00000010782)	ENSNBRG00000010759	PRKCE (ENSNBRG00000010716)
Nile tilapia	MODERN SPECIES	20	uros (ENSONIG00000042838)	bccip (ENSONIG00000016006)	dhx32a (ENSONIG00000016005)	ADAM12 (ENSONIG00000015999)	INSYN2A (ENSONIG00000015997)	dock1 (ENSONIG00000015979)	foxi1 (ENSONIG00000015977)	CLRN3 (ENSONIG00000015976)	PTPRE (ENSONIG00000015969)	entpd1 (ENSONIG00000015966)	ENSONIG00000043002 ##8	ENSONIG00000015950 ##12	psme4b (ENSONIG00000015943) ##20	chac2 (ENSONIG00000028018)	ENSONIG00000042691	ENSONIG00000015930 ##22	gth-ri (ENSONIG00000035442)	ENSONIG00000015909 #28	msh2 (ENSONIG00000015907)	gch2 (ENSONIG00000015905)	cript (ENSONIG00000029387)	pigf (ENSONIG00000015903)	cox7a2l (ENSONIG00000035385)	KCNG3 (ENSONIG00000015901)	mta3 (ENSONIG00000015893)	ENSONIG00000042263	ENSONIG00000037396	ENSONIG00000028185	ENSONIG00000038903	ppm1bb (ENSONIG00000015891)	ENSONIG00000015890
Midas cichlid	MODERN SPECIES	518	mmp21 (ENSACIG00000001160)	uros (ENSACIG00000001192)	bccip (ENSACIG00000001411)	dhx32a (ENSACIG00000001436)	ADAM12 (ENSACIG00000001512)	dock1 (ENSACIG00000001686)	INSYN2A (ENSACIG00000001802)	foxi1 (ENSACIG00000001810)	CLRN3 (ENSACIG00000001820)	PTPRE (ENSACIG00000001845)	entpd1 (ENSACIG00000001894)	ENSACIG00000001928 ##8	ENSACIG00000001970 ##12	psme4b (ENSACIG00000002039) ##20	chac2 (ENSACIG00000002511)	ENSACIG00000002525 ##22	ENSACIG00000002582	fshr (ENSACIG00000002625)	ENSACIG00000003211 #28	msh2 (ENSACIG00000003262)	gch2 (ENSACIG00000003301)	cript (ENSACIG00000003316)	pigf (ENSACIG00000003340)	cox7a2l (ENSACIG00000003357)	KCNG3 (ENSACIG00000003375)	mta3 (ENSACIG00000003392)	ppm1bb (ENSACIG00000003685)	ENSACIG00000003696	ENSACIG00000003702	ENSACIG00000003746	glud1b (ENSACIG00000003836)
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Zig-zag eel	MODERN SPECIES	10	MMP21 (ENSMAMG00000019689)	bccip (ENSMAMG00000020052)	dhx32a (ENSMAMG00000020062)	ADAM12 (ENSMAMG00000020105)	ENSMAMG00000020124	dock1 (ENSMAMG00000020132)	INSYN2A (ENSMAMG00000020207)	foxi1 (ENSMAMG00000020215)	CLRN3 (ENSMAMG00000000392)	PTPRE (ENSMAMG00000000426)	ENSMAMG00000000544	ENSMAMG00000000852 ##8	ENSMAMG00000000592 ##12	ENSMAMG00000000863 ##20	chac2 (ENSMAMG00000026406)	ENSMAMG00000000894 ##22	fshr (ENSMAMG00000001028)	ENSMAMG00000001073 #28	msh2 (ENSMAMG00000001147)	gch2 (ENSMAMG00000001199)	cript (ENSMAMG00000001230)	pigf (ENSMAMG00000001251)	cox7a2l (ENSMAMG00000001259)	ENSMAMG00000025855	mta3 (ENSMAMG00000001282)	ppm1bb (ENSMAMG00000001356)	ENSMAMG00000001391	ENSMAMG00000001414	ENSMAMG00000001493	glud1b (ENSMAMG00000001594)	sncgb (ENSMAMG00000001628)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Climbing perch	MODERN SPECIES	10	bccip (ENSATEG00000001234)	dhx32a (ENSATEG00000001267)	ADAM12 (ENSATEG00000001358)	ENSATEG00000001467	dock1 (ENSATEG00000001484)	INSYN2A (ENSATEG00000001760)	foxi1 (ENSATEG00000001765)	CLRN3 (ENSATEG00000001770)	PTPRE (ENSATEG00000001800)	ENSATEG00000001899	ENSATEG00000001906 ##8	ENSATEG00000001914 ##12	ENSATEG00000001923 ##20	ENSATEG00000028796 ##20	chac2 (ENSATEG00000030104)	ENSATEG00000002127 ##22	fshr (ENSATEG00000002215)	ENSATEG00000002263 #28	msh2 (ENSATEG00000002352)	gch2 (ENSATEG00000002423)	cript (ENSATEG00000002443)	pigf (ENSATEG00000002462)	cox7a2l (ENSATEG00000002490)	ENSATEG00000002496	mta3 (ENSATEG00000002519)	ppm1bb (ENSATEG00000002599)	ENSATEG00000002618	ENSATEG00000002634	ENSATEG00000029351	glud1b (ENSATEG00000002692)	sncgb (ENSATEG00000026192)
Siamese fighting fish	MODERN SPECIES	9	uros (ENSBSLG00000025733)	bccip (ENSBSLG00000025752)	dhx32a (ENSBSLG00000025763)	ADAM12 (ENSBSLG00000025799)	ENSBSLG00000025943	dock1 (ENSBSLG00000026198)	INSYN2A (ENSBSLG00000026465)	foxi1 (ENSBSLG00000026469)	CLRN3 (ENSBSLG00000026470)	PTPRE (ENSBSLG00000026475)	entpd1 (ENSBSLG00000026484)	ENSBSLG00000026488 ##8	THBS2 (ENSBSLG00000026494) ##12	psme4b (ENSBSLG00000026527) ##20	chac2 (ENSBSLG00000026542)	ENSBSLG00000026566 ##22	fshr (ENSBSLG00000026584)	ENSBSLG00000026602 #28	msh2 (ENSBSLG00000026610)	gch2 (ENSBSLG00000026612)	cript (ENSBSLG00000026613)	pigf (ENSBSLG00000026614)	cox7a2l (ENSBSLG00000026615)	KCNG3 (ENSBSLG00000026616)	mta3 (ENSBSLG00000026619)	ppm1bb (ENSBSLG00000026621)	ENSBSLG00000026622	ENSBSLG00000026623	ENSBSLG00000026624	glud1b (ENSBSLG00000026625)	SYNPO2L (ENSBSLG00000026626)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000178120	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b
Turbot	MODERN SPECIES	9	MMP21 (ENSSMAG00000003080)	UROS (ENSSMAG00000003092)	bccip (ENSSMAG00000003119)	dhx32a (ENSSMAG00000003101)	ADAM12 (ENSSMAG00000003145)	dock1 (ENSSMAG00000003179)	INSYN2A (ENSSMAG00000003452)	foxi1 (ENSSMAG00000003460)	CLRN3 (ENSSMAG00000003475)	PTPRE (ENSSMAG00000003503)	ENSSMAG00000003586	ENSSMAG00000003604 ##8	ENSSMAG00000003621 ##12	psme4b (ENSSMAG00000003686) ##20	ENSSMAG00000034734	ENSSMAG00000004070 ##22	ENSSMAG00000004323	fshr (ENSSMAG00000004334)	ENSSMAG00000004406 #28	ENSSMAG00000005014	msh2 (ENSSMAG00000004474)	gch2 (ENSSMAG00000004540)	cript (ENSSMAG00000004553)	pigf (ENSSMAG00000025703)	cox7a2l (ENSSMAG00000004604)	ENSSMAG00000021547	mta3 (ENSSMAG00000004708)	ppm1bb (ENSSMAG00000004769)	ENSSMAG00000004784	ENSSMAG00000004798	ENSSMAG00000004841
Tongue sole	MODERN SPECIES	18	ENSCSEG00000007751	scn4aa (ENSCSEG00000007695)	selenou1b (ENSCSEG00000007675)	ENSCSEG00000007672	ENSCSEG00000007653	ENSCSEG00000007637	PDZD7 (ENSCSEG00000010463)	LZTS2 (ENSCSEG00000010449)	twnk (ENSCSEG00000010425)	mrpl43 (ENSCSEG00000010410)	SEMA4G (ENSCSEG00000010373)	ENSCSEG00000010364 ##8	ENSCSEG00000010304 ##12	psme4b (ENSCSEG00000010231) ##20	chac2 (ENSCSEG00000010217)	ENSCSEG00000009912 ##22	fshr (ENSCSEG00000009807)	ENSCSEG00000009730 #28	msh2 (ENSCSEG00000009672)	gch2 (ENSCSEG00000009652)	cript (ENSCSEG00000009642)	pigf (ENSCSEG00000009629)	KCNG3 (ENSCSEG00000009620)	mta3 (ENSCSEG00000009509)	ppm1bb (ENSCSEG00000009461)	ENSCSEG00000008872	PRKCE (ENSCSEG00000008849)	ENSCSEG00000008844	glud1b (ENSCSEG00000008806)	sncgb (ENSCSEG00000008780)	ldb3b (ENSCSEG00000008740)
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000159140.d	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Yellowtail amberjack	MODERN SPECIES	2739	uros (ENSSLDG00000019335)	bccip (ENSSLDG00000019314)	dhx32a (ENSSLDG00000019300)	ADAM12 (ENSSLDG00000019253)	INSYN2A (ENSSLDG00000019229)	dock1 (ENSSLDG00000019045)	foxi1 (ENSSLDG00000018994)	CLRN3 (ENSSLDG00000018981)	PTPRE (ENSSLDG00000018865)	entpd1 (ENSSLDG00000018802)	ENSSLDG00000018780 ##8	ENSSLDG00000018556 ##12	ENSSLDG00000018464 ##20	ENSSLDG00000018410 ##20	chac2 (ENSSLDG00000018388)	ENSSLDG00000018042 ##22	fshr (ENSSLDG00000017431)	ENSSLDG00000017277 #28	msh2 (ENSSLDG00000017228)	gch2 (ENSSLDG00000017197)	cript (ENSSLDG00000017178)	pigf (ENSSLDG00000017163)	cox7a2l (ENSSLDG00000017151)	KCNG3 (ENSSLDG00000017142)	mta3 (ENSSLDG00000017109)	ppm1bb (ENSSLDG00000017076)	ENSSLDG00000017057	ENSSLDG00000017025	ENSSLDG00000017005	glud1b (ENSSLDG00000016956)	sncgb (ENSSLDG00000016926)
Greater amberjack	MODERN SPECIES	27	mmp21 (ENSSDUG00000018543)	uros (ENSSDUG00000017922)	bccip (ENSSDUG00000017827)	dhx32a (ENSSDUG00000017808)	ADAM12 (ENSSDUG00000017759)	INSYN2A (ENSSDUG00000017746)	dock1 (ENSSDUG00000017551)	foxi1 (ENSSDUG00000017531)	CLRN3 (ENSSDUG00000017521)	PTPRE (ENSSDUG00000017325)	entpd1 (ENSSDUG00000017232)	ENSSDUG00000017222 ##8	ENSSDUG00000016942 ##12	psme4b (ENSSDUG00000016370) ##20	chac2 (ENSSDUG00000016307)	ENSSDUG00000016261 ##22	fshr (ENSSDUG00000016150)	ENSSDUG00000016093 #28	msh2 (ENSSDUG00000015407)	gch2 (ENSSDUG00000015312)	cript (ENSSDUG00000015283)	pigf (ENSSDUG00000015260)	cox7a2l (ENSSDUG00000015249)	KCNG3 (ENSSDUG00000015243)	mta3 (ENSSDUG00000015164)	ppm1bb (ENSSDUG00000015117)	ENSSDUG00000015108	PRKCE (ENSSDUG00000015074)	ENSSDUG00000015060	glud1b (ENSSDUG00000015018)	ENSSDUG00000015002
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	979																ENSLCAG00010013300 ##22	fshr (ENSLCAG00010013289)	ENSLCAG00010013281 #28
Barramundi perch	MODERN SPECIES	135	uros (ENSLCAG00010021365)	bccip (ENSLCAG00010021371)	dhx32a (ENSLCAG00010021376)	ADAM12 (ENSLCAG00010021398)	ENSLCAG00010021479	dock1 (ENSLCAG00010021628)	INSYN2A (ENSLCAG00010022536)	foxi1 (ENSLCAG00010022539)	CLRN3 (ENSLCAG00010022540)	PTPRE (ENSLCAG00010022601)	entpd1 (ENSLCAG00010022732)	ENSLCAG00010022737 ##8	ENSLCAG00010022780 ##12	psme4b (ENSLCAG00010023020) ##20	chac2 (ENSLCAG00010023097)	ENSLCAG00010023192 ##22	ENSLCAG00010023419
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Tetraodontidae	ANCESTRAL SPECIES	23																ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000177943	ENSGT00390000000854.c.a	ENSGT00940000154877.C.q	ENSGT01100000263502.B.a.a.d.b.c.b
Tetraodon	MODERN SPECIES	13																ENSTNIG00000001543 ##22	fshr (ENSTNIG00000003601)	ENSTNIG00000003602 #28	msh2 (ENSTNIG00000003603)	gch2 (ENSTNIG00000003604)	cript (ENSTNIG00000003605)	pigf (ENSTNIG00000003606)	cox7a2l (ENSTNIG00000003607)	ppm1bb (ENSTNIG00000005327)	ENSTNIG00000005328	PRKCE (ENSTNIG00000005329)	ENSTNIG00000005330	glud1b (ENSTNIG00000005331)	ENSTNIG00000006395	myoz1b (ENSTNIG00000006394)	SYNPO2L (ENSTNIG00000006393)
Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00730000113876	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Perciformes	ANCESTRAL SPECIES	9	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00730000113876	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00530000063787.B.d.a	ENSGT00940000154974	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
Channel bull blenny	MODERN SPECIES	10	uros (ENSCGOG00000018598)	bccip (ENSCGOG00000018594)	dhx32a (ENSCGOG00000018590)	ADAM12 (ENSCGOG00000018303)	ENSCGOG00000018297	INSYN2A (ENSCGOG00000018294)	dock1 (ENSCGOG00000017804)	foxi1 (ENSCGOG00000017776)	CLRN3 (ENSCGOG00000017772)	PTPRE (ENSCGOG00000014662)	entpd1 (ENSCGOG00000014582)	ENSCGOG00000014575 ##8	ENSCGOG00000013977 ##12	psme4b (ENSCGOG00000013783) ##20	chac2 (ENSCGOG00000013748)	ENSCGOG00000009816 ##22	fshr (ENSCGOG00000009213)	ENSCGOG00000008547 #28	msh2 (ENSCGOG00000008128)	gch2 (ENSCGOG00000008088)	cript (ENSCGOG00000008097)	pigf (ENSCGOG00000008083)	cox7a2l (ENSCGOG00000008081)	KCNG3 (ENSCGOG00000008079)	mta3 (ENSCGOG00000004483)	ppm1bb (ENSCGOG00000004256)	ENSCGOG00000004252	PRKCE (ENSCGOG00000003836)	ENSCGOG00000003830	ENSCGOG00000003827	glud1b (ENSCGOG00000003826)
Pike perch	MODERN SPECIES	3	uros (ENSSLUG00000024636)	bccip (ENSSLUG00000024625)	dhx32a (ENSSLUG00000024622)	ADAM12 (ENSSLUG00000024431)	INSYN2A (ENSSLUG00000024407)	ENSSLUG00000024404	dock1 (ENSSLUG00000019444)	foxi1 (ENSSLUG00000019047)	CLRN3 (ENSSLUG00000019042)	PTPRE (ENSSLUG00000017791)	entpd1 (ENSSLUG00000017726)	ENSSLUG00000017718 ##8	ENSSLUG00000016833 ##12	psme4b (ENSSLUG00000015657) ##20	chac2 (ENSSLUG00000015483)	ENSSLUG00000012999 ##22	fshr (ENSSLUG00000012231)	ENSSLUG00000011642 #28	msh2 (ENSSLUG00000011314)	gch2 (ENSSLUG00000011284)	cript (ENSSLUG00000011270)	pigf (ENSSLUG00000011265)	cox7a2l (ENSSLUG00000011262)	KCNG3 (ENSSLUG00000011256)	mta3 (ENSSLUG00000008595)	ppm1bb (ENSSLUG00000008395)	ENSSLUG00000008391	PRKCE (ENSSLUG00000007591)	ENSSLUG00000007542	glud1b (ENSSLUG00000007491)	sncgb (ENSSLUG00000007474)
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00730000113876	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Lumpfish	MODERN SPECIES	10	mmp21 (ENSCLMG00005006992)	uros (ENSCLMG00005006994)	bccip (ENSCLMG00005007003)	dhx32a (ENSCLMG00005007005)	ADAM12 (ENSCLMG00005007034)	dock1 (ENSCLMG00005007103)	INSYN2A (ENSCLMG00005010998)	foxi1 (ENSCLMG00005010999)	ENSCLMG00005011000	PTPRE (ENSCLMG00005011030)	entpd1 (ENSCLMG00005017239)	ENSCLMG00005017241 ##8	ENSCLMG00005017243 ##12	psme4b (ENSCLMG00005017256) ##20	chac2 (ENSCLMG00005017453)	ENSCLMG00005017454 ##22	fshr (ENSCLMG00005017510)	ENSCLMG00005017517 #28	msh2 (ENSCLMG00005018336)	gch2 (ENSCLMG00005018375)	cript (ENSCLMG00005018377)	pigf (ENSCLMG00005018378)	cox7a2l (ENSCLMG00005018379)	KCNG3 (ENSCLMG00005018381)	mta3 (ENSCLMG00005018412)	ppm1bb (ENSCLMG00005019534)	ENSCLMG00005019535	PRKCE (ENSCLMG00005019536)	ENSCLMG00005019700	glud1b (ENSCLMG00005019715)	sncgb (ENSCLMG00005019719)
Stickleback	MODERN SPECIES	5	uros (ENSGACG00000002608)	bccip (ENSGACG00000002614)	dhx32a (ENSGACG00000002621)	ADAM12 (ENSGACG00000002628)	ENSGACG00000002637	dock1 (ENSGACG00000002640)	INSYN2A (ENSGACG00000002652)	foxi1 (ENSGACG00000002658)	CLRN3 (ENSGACG00000002659)	PTPRE (ENSGACG00000002663)	entpd1 (ENSGACG00000002668)	ENSGACG00000002681 ##8	ENSGACG00000002687 ##12	psme4b (ENSGACG00000002691) ##20	chac2 (ENSGACG00000002711)	ENSGACG00000002720 ##22	fshr (ENSGACG00000002728)	ENSGACG00000002737 #28	msh2 (ENSGACG00000002745)	gch2 (ENSGACG00000002770)	cript (ENSGACG00000002772)	pigf (ENSGACG00000002773)	cox7a2l (ENSGACG00000002776)	KCNG3 (ENSGACG00000002778)	mta3 (ENSGACG00000002782)	ppm1bb (ENSGACG00000002795)	ENSGACG00000002799	PRKCE (ENSGACG00000002801)	ENSGACG00000002809	glud1b (ENSGACG00000002813)	sncgb (ENSGACG00000002849)
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00730000113876	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00940000155930	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	33	ENSGT00390000009853	ENSGT00390000000696	ENSGT00940000157227.g	ENSGT00940000155495.C.a.a	ENSGT00940000153123.C.b	ENSGT00940000154974	ENSGT00530000063787.B.d.a	ENSGT00940000164576.a	ENSGT00850000132319.b	ENSGT00940000156570.a	ENSGT01100000263542.C	ENSGT00940000155293.a.b ##8	ENSGT00940000157846.d ##12	ENSGT00390000011433.s.b ##20	ENSGT00390000003855.a	ENSGT00940000154292.a.a ##22	ENSGT00940000158952	ENSGT00550000074867	ENSGT00390000013481.c.b.a	ENSGT00950000183100.C	ENSGT00390000016617	ENSGT00940000154815.b.a	ENSGT00940000159658.a.b	ENSGT01030000234573.B.c.b.a	ENSGT00940000156070.a.b	ENSGT00940000160346.A	ENSGT00940000154711.a.b	ENSGT00390000000854.c.a	ENSGT00950000183175.A.d.b	ENSGT00940000154877.C	ENSGT01100000263502.B.a.a.d.b.c.b
European seabass	MODERN SPECIES	11	ENSDLAG00005006098	MMP21 (ENSDLAG00005027490)	bccip (ENSDLAG00005031346)	dhx32a (ENSDLAG00005006732)	ADAM12 (ENSDLAG00005006783)	dock1 (ENSDLAG00005007276)	FAM196A (ENSDLAG00005015347)	foxi1 (ENSDLAG00005015365)	CLRN3 (ENSDLAG00005015367)	PTPRE (ENSDLAG00005015431)	KCNK1 (ENSDLAG00005026639) ##8	ENTPD1 (ENSDLAG00005018439)	ENSDLAG00005018505 ##12	psme4b (ENSDLAG00005020027) ##20	CHAC2 (ENSDLAG00005031751)	ENSDLAG00005021386 ##22	fshr (ENSDLAG00005022892)	ENSDLAG00005023202 #28	msh2 (ENSDLAG00005023296)	GCH1 (ENSDLAG00005023327)	cript (ENSDLAG00005023335)	PIGF (ENSDLAG00005034160)	cox7a2l (ENSDLAG00005023340)	KCNG3 (ENSDLAG00005027353)	MTA3 (ENSDLAG00005023378)	ppm1bb (ENSDLAG00005023714)	ENSDLAG00005023722	ENSDLAG00005023734	glud1b (ENSDLAG00005023810)	sncgb (ENSDLAG00005030375)	ldb3b (ENSDLAG00005023928)
Large yellow croaker	MODERN SPECIES	488	bccip (ENSLCRG00005022527)	dhx32a (ENSLCRG00005022524)	ADAM12 (ENSLCRG00005022455)	ENSLCRG00005022452	INSYN2A (ENSLCRG00005022449)	dock1 (ENSLCRG00005022368)	foxi1 (ENSLCRG00005022350)	CLRN3 (ENSLCRG00005022349)	PTPRE (ENSLCRG00005021557)	entpd1 (ENSLCRG00005021522)	ENSLCRG00005021519 ##8	ENSLCRG00005021277 ##12	psme4b (ENSLCRG00005020760) ##20	chac2 (ENSLCRG00005020746)	ENSLCRG00005020745	ENSLCRG00005019738 ##22	fshr (ENSLCRG00005018929)	ENSLCRG00005018832 #28	msh2 (ENSLCRG00005018779)	gch2 (ENSLCRG00005018775)	cript (ENSLCRG00005018772)	pigf (ENSLCRG00005018771)	cox7a2l (ENSLCRG00005018769)	KCNG3 (ENSLCRG00005018767)	mta3 (ENSLCRG00005016037)	ppm1bb (ENSLCRG00005015987)	PRKCE (ENSLCRG00005015959)	glud1b (ENSLCRG00005015783)	sncgb (ENSLCRG00005015776)	ldb3b (ENSLCRG00005015765)	OPN4 (ENSLCRG00005015761)
Gilthead seabream	MODERN SPECIES	12	mmp21 (ENSSAUG00010023865)	uros (ENSSAUG00010023867)	bccip (ENSSAUG00010023874)	dhx32a (ENSSAUG00010023877)	ADAM12 (ENSSAUG00010023879)	ENSSAUG00010024056	dock1 (ENSSAUG00010024133)	INSYN2A (ENSSAUG00010026170)	foxi1 (ENSSAUG00010026174)	ENSSAUG00010026175 ##8	PTPRE (ENSSAUG00010026191)	entpd1 (ENSSAUG00010026489)	ENSSAUG00010026490 ##12	psme4b (ENSSAUG00010026507) ##20	chac2 (ENSSAUG00010026524)	ENSSAUG00010026529 ##22	fshr (ENSSAUG00010026589)	ENSSAUG00010026760 #28	msh2 (ENSSAUG00010026791)	gch2 (ENSSAUG00010026795)	cript (ENSSAUG00010026796)	pigf (ENSSAUG00010026798)	cox7a2l (ENSSAUG00010026799)	KCNG3 (ENSSAUG00010026800)	mta3 (ENSSAUG00010026806)	ppm1bb (ENSSAUG00010026834)	ENSSAUG00010026835	PRKCE (ENSSAUG00010026849)	ENSSAUG00010026862	glud1b (ENSSAUG00010026864)	sncgb (ENSSAUG00010026866)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	253															ENSLBEG00000027126 ##22	ENSLBEG00000027093 ##22	fshr (ENSLBEG00000027081)	ENSLBEG00000027020 #28	msh2 (ENSLBEG00000026966)	gch2 (ENSLBEG00000026947)	cript (ENSLBEG00000026934)	pigf (ENSLBEG00000026923)	cox7a2l (ENSLBEG00000026915)	KCNG3 (ENSLBEG00000026911)	mta3 (ENSLBEG00000026886)	ppm1bb (ENSLBEG00000026864)	ENSLBEG00000026849	PRKCE (ENSLBEG00000026816)	ENSLBEG00000026753	glud1b (ENSLBEG00000026707)	sncgb (ENSLBEG00000026656)
Ballan wrasse	MODERN SPECIES	253																ENSLBEG00000027126 ##22	ENSLBEG00000027093 ##22	fshr (ENSLBEG00000027081)	ENSLBEG00000027020 #28	msh2 (ENSLBEG00000026966)	gch2 (ENSLBEG00000026947)	cript (ENSLBEG00000026934)	pigf (ENSLBEG00000026923)	cox7a2l (ENSLBEG00000026915)	KCNG3 (ENSLBEG00000026911)	mta3 (ENSLBEG00000026886)	ppm1bb (ENSLBEG00000026864)	ENSLBEG00000026849	PRKCE (ENSLBEG00000026816)	ENSLBEG00000026753	glud1b (ENSLBEG00000026707)
Ballan wrasse	MODERN SPECIES	223	uros (ENSLBEG00000025336)	bccip (ENSLBEG00000025284)	dhx32a (ENSLBEG00000025242)	ADAM12 (ENSLBEG00000025211)	ENSLBEG00000025189	INSYN2A (ENSLBEG00000025181)	dock1 (ENSLBEG00000024909)	foxi1 (ENSLBEG00000024810)	CLRN3 (ENSLBEG00000024794)	PTPRE (ENSLBEG00000024717)	entpd1 (ENSLBEG00000024667)	ENSLBEG00000024654 ##8	ENSLBEG00000024586 ##12	psme4b (ENSLBEG00000024492) ##20	chac2 (ENSLBEG00000024455)	ENSLBEG00000024443 ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Euteleostomi	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000154292.b ##22
Tetraodon	MODERN SPECIES	26	ENSTNIG00000001993	ENSTNIG00000000910	zgc:113232 (ENSTNIG00000001992)	ENSTNIG00000001990	ENSTNIG00000001988	NOX5 (ENSTNIG00000001987)	ENSTNIG00000001986	asb4 (ENSTNIG00000001985)	sgf29 (ENSTNIG00000006496)	ENSTNIG00000001983	ENSTNIG00000000870	ENSTNIG00000001980	GALNT12 (ENSTNIG00000001978)	car15 (ENSTNIG00000009091)	ENSTNIG00000001977	ENSTNIG00000001976 ##22	ENSTNIG00000001975	MAP2K1 (ENSTNIG00000001974)	ENSTNIG00000001973	ENSTNIG00000001972	ENSTNIG00000001971	PAQR6 (ENSTNIG00000001968)	ENSTNIG00000001967	ENSTNIG00000001964	ENSTNIG00000001963	ENSTNIG00000001962	atp6v1f (ENSTNIG00000000053)	rgma (ENSTNIG00000001957)	RRM2 (ENSTNIG00000001955)	ENSTNIG00000001507	ENSTNIG00000001951